Citrus Sinensis ID: 017143

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370------
Protein Sequence
MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAEDDRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAIEEVMEELNCIASA
Secondary Structure (PSIPRED)
ccccccEEEEEEcccHHHHHHHHHHHHcccccEEEEEEEcccHHHHHHHHHHHccccccccccccHHHHHccccccEEEEcccccccHHHHHHHHHccccccEEEcccccccHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHccccccEEEEEEEEEcccccccccccccccccccccccccHHHHHHHHHHHccccccEEEEEEEccccccccccccccccEEEEEEEEEEEccccEEEEEEccccccccccEEEEEEcccEEEEEEccccEEEEEEcccccccEEEcccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccEEEccccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEEEccHHHHHHHHHHHHcccccEEEEEEEcccHHHHHHHHHHHccccccccEEccHHHHHccccccEEEEEcccccHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHcccccEEEEEEEEEcccccccccccHHHHHcccccHHHHHHHHHHHHHHHHHccccEEEEEEEEEccccHHHHcccccccEEcEEEEEEEEccccEEEEEEcEEEccccccEEEEEEEccEEEEEcccccEEEEEcccccEEEEEEEEccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccEEHHHHHHHHHcHccc
Coil and Loop (DISEMBL)
MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAnafdwplkvfpghqelldsglcdvvvvstpnmtHYQILMDIinhpkphhvlvekplcttvADCKKVVDAARKRPDILVQVGleyrymppvAKLIQIVKSGSIGQVKMVAIREHRfpflvkvndwnrfnentggtlvekcchffdlmrlfvgsnpmrvmasgavdvnhkdemyngkvpdiidNAYVIVEFengsrgmldlcmfaegskneQEIVVVGntgkgeafvpESIVRFATreagredvqtlkaeddrieyeglhhgssyLEHLNFLSAIRAkgakvpavdlqdgLISVAIGVAAQLSIEKGRFIAIEEVMEELNCIASA
Flexible Loop (DISEMBL)
maandtvkYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVvdaarkrpdILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENGSRGMLDLCMFAEGSKNEQEIVVVGntgkgeafvPESIVrfatreagredvqtlkaeddRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAIEEVMEELNCIASA
Low Complexity Region (SEG)
MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAEDDRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAIEEVMEELNCIASA
Disordered region (IsUnstruct)
*****TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREA****VQTLKAEDDRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAIEEVMEELNCI***
Disordered Region (DISOPRED)
**ANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAEDDRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAIEEVME*L******
Disordered Region (DISEMBL)
MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAEDDRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAIEEVMEELNCIASA
Disordered Region (DISPRO)
***NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAEDDRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAIEEVMEELNCIA**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAEDDRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAIEEVMEELNCIASA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	376	2.2.26 [Sep-21-2011]
P49307	317	Rhizopine catabolism prot	no	no	0.577	0.684	0.258	2e-16
Q8ZK57	336	Inositol 2-dehydrogenase	yes	no	0.412	0.461	0.335	2e-15
A9N564	336	Inositol 2-dehydrogenase	yes	no	0.412	0.461	0.335	2e-15
B5F3F4	336	Inositol 2-dehydrogenase	yes	no	0.412	0.461	0.335	2e-15
O05389	341	Uncharacterized oxidoredu	yes	no	0.851	0.938	0.273	2e-14
P40332	342	Uncharacterized oxidoredu	no	no	0.851	0.935	0.230	1e-13
O34371	428	Putative oxidoreductase Y	no	no	0.414	0.364	0.304	1e-13
A7ZAH5	344	Inositol 2-dehydrogenase/	yes	no	0.845	0.924	0.247	2e-13
Q54728	367	Uncharacterized oxidoredu	yes	no	0.595	0.610	0.258	3e-13
A4FK61	338	Inositol 2-dehydrogenase	yes	no	0.569	0.633	0.276	4e-13

>sp|P49307|MOCA_RHIML Rhizopine catabolism protein MocA OS=Rhizobium meliloti GN=mocA PE=3 SV=1

 Score = 87.4 bits (215), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 109/251 (43%), Gaps = 34/251 (13%)

Query: 8   KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQ 67
           + G++G G MG+ H        S  V +  +ADP   SR   L LA      +K +    
Sbjct: 5   RLGLVGAGRMGQVHV--RAAAESSLVEIAAVADPIAASR---LNLAGN---GIKTYETAG 56

Query: 68  ELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRP 127
           +++++G  D V+++TP+ TH   + DI     P  +L EKP   T  + +K  D A +R 
Sbjct: 57  DMIEAGEVDGVLIATPSNTHVDTVADIAARGLP--ILCEKPCGVTAEEARKAADVA-ERY 113

Query: 128 DILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDW------NRFN 181
            + +Q+G   R++P + +L   +++G +G +           +LV    W      N F 
Sbjct: 114 KVHLQIGYWRRFVPELKQLRDDIRAGLLGNL-----------YLVSCFQWDEAPPANSFR 162

Query: 182 ENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVE 241
              GG  ++   H FD MR   G  P          V      + G V    D   ++ +
Sbjct: 163 ATGGGAFIDMGVHEFDQMRWLTGQEPTNFR------VATSKTTFAGAVKGDPDAVQLLCD 216

Query: 242 FENGSRGMLDL 252
             +GS G++ L
Sbjct: 217 LSDGSSGLVSL 227

Could catalyze the NADH-dependent dehydrogenase reaction involved in rhizopine (L-3-O-methyl-scyllo-inosamine) catabolism.
Rhizobium meliloti (taxid: 382)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -

>sp|Q8ZK57|IOLG_SALTY Inositol 2-dehydrogenase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=iolG PE=1 SV=1

 Score = 84.3 bits (207), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 86/161 (53%), Gaps = 6/161 (3%)

Query: 6   TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPG 65
           T+K GI+G+GM+G +H   L +  S GV VV + D      Q AL   + +    K +  
Sbjct: 2   TLKAGIVGIGMIGSDHLRRLANTVS-GVEVVAVCDIVAGRAQAAL---DKYAIEAKDYND 57

Query: 66  HQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARK 125
           + +L++    +VV+++  N  H  + +  +N  K  +V  EKPL  T ADC++V++A +K
Sbjct: 58  YHDLINDKDVEVVIITASNEAHADVAVAALNANK--YVFCEKPLAVTAADCQRVIEAEQK 115

Query: 126 RPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREH 166
               +VQ+G   RY     +L  I+ SG IGQ  MV  R +
Sbjct: 116 NGKRMVQIGFMRRYDKGYVQLKNIIDSGEIGQPLMVHGRHY 156

Involved in the oxidation of myo-inositol (MI) to 2-keto-myo-inositol (2KMI or 2-inosose).

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|A9N564|IOLG_SALPB Inositol 2-dehydrogenase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=iolG PE=3 SV=1

 Score = 84.3 bits (207), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 86/161 (53%), Gaps = 6/161 (3%)

Query: 6   TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPG 65
           T+K GI+G+GM+G +H   L +  S GV VV + D      Q AL   + +    K +  
Sbjct: 2   TLKAGIVGIGMIGSDHLRRLANTVS-GVEVVAVCDIVAGRAQAAL---DKYAIEAKDYND 57

Query: 66  HQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARK 125
           + +L++    +VV+++  N  H  + +  +N  K  +V  EKPL  T ADC++V++A +K
Sbjct: 58  YHDLINDKDVEVVIITASNEAHADVAVAALNANK--YVFCEKPLAVTAADCQRVIEAEQK 115

Query: 126 RPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREH 166
               +VQ+G   RY     +L  I+ SG IGQ  MV  R +
Sbjct: 116 NGKRMVQIGFMRRYDKGYVQLKNIIDSGEIGQPLMVHGRHY 156

Involved in the oxidation of myo-inositol (MI) to 2-keto-myo-inositol (2KMI or 2-inosose).

Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) (taxid: 1016998)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|B5F3F4|IOLG_SALA4 Inositol 2-dehydrogenase OS=Salmonella agona (strain SL483) GN=iolG PE=3 SV=1

 Score = 84.3 bits (207), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 86/161 (53%), Gaps = 6/161 (3%)

Query: 6   TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPG 65
           T+K GI+G+GM+G +H   L +  S GV VV + D      Q AL   + +    K +  
Sbjct: 2   TLKAGIVGIGMIGSDHLRRLANTVS-GVEVVAVCDIVAGRAQAAL---DKYAIEAKDYND 57

Query: 66  HQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARK 125
           + +L++    +VV+++  N  H  + +  +N  K  +V  EKPL  T ADC++V++A +K
Sbjct: 58  YHDLINDKDVEVVIITASNEAHADVAVAALNANK--YVFCEKPLAVTAADCQRVIEAEQK 115

Query: 126 RPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREH 166
               +VQ+G   RY     +L  I+ SG IGQ  MV  R +
Sbjct: 116 NGKRMVQIGFMRRYDKGYVQLKNIIDSGEIGQPLMVHGRHY 156

Involved in the oxidation of myo-inositol (MI) to 2-keto-myo-inositol (2KMI or 2-inosose).

Salmonella agona (strain SL483) (taxid: 454166)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|O05389|YRBE_BACSU Uncharacterized oxidoreductase YrbE OS=Bacillus subtilis (strain 168) GN=yrbE PE=3 SV=2

 Score = 80.5 bits (197), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 164/362 (45%), Gaps = 42/362 (11%)

Query: 10  GIIGMGMMGREHFINLH---HLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGH 66
           GIIG G +G+ H  N+    H++ + +S +        SR ++   ++  ++   +   +
Sbjct: 8   GIIGAGRIGKLHVQNISRIPHMKIKAISDI------QASRIKSWADSHQIEY---ITSDY 58

Query: 67  QELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKR 126
           ++LL     D + + +P   H Q++ +     K  H+  EKP+  ++ +  + + A RK 
Sbjct: 59  RDLLHDPDIDAIFICSPTAVHAQMIKEAAEAKK--HIFCEKPVSFSLDETSEALAAVRKH 116

Query: 127 PDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAI--REHRFPFLVKVNDWNRFNENT 184
             + +QVG   R+ P   K+  IV++G IG   ++ I  R+   P +    D+ R    +
Sbjct: 117 -GVTLQVGFNRRFDPHFKKIKTIVENGEIGTPHLLKITSRDPEPPNI----DYVR---TS 168

Query: 185 GGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFEN 244
           GG  ++   H FD+ R  +GS    V A GA  VN        ++ D ID A + + FEN
Sbjct: 169 GGLFMDMSIHDFDMARYIMGSEVTEVYAKGAALVNPS----FAELGD-IDTAVITLTFEN 223

Query: 245 GSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAEDDR 304
           G+  ++D    A    + Q + V G   KG A    S  R  T E    D   +K   D+
Sbjct: 224 GAMAVIDNSRQAVYGYD-QRVEVFGT--KGSAAADNS--RPTTVEVSTADF-VMK---DK 274

Query: 305 IEYEGL-HHGSSYLEH-LNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIA 362
             +  L  +  SY E  L F  AI     + P     DGL +  I  AAQ S+  G  ++
Sbjct: 275 PHFFFLERYKDSYEEEILRFAEAI-GTNQETPCTG-NDGLQAGRIARAAQQSLAFGMPVS 332

Query: 363 IE 364
           IE
Sbjct: 333 IE 334

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|P40332|YISS_BACSU Uncharacterized oxidoreductase YisS OS=Bacillus subtilis (strain 168) GN=yisS PE=3 SV=2

 Score = 78.2 bits (191), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 145/356 (40%), Gaps = 36/356 (10%)

Query: 7   VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGH 66
           V+  ++G+G +G  H  NL      G  +VC+ DP     +Q  +      W    +   
Sbjct: 5   VRCAVLGLGRLGYYHAKNLV-TSVPGAKLVCVGDPLKGRAEQVARELGIEKWSEDPY--- 60

Query: 67  QELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKR 126
            E+L+    D V++ TP  TH  +++    + K   + VEKPL  ++ + K   +   K 
Sbjct: 61  -EVLEDPGIDAVIIVTPTSTHGDMIIKAAENGK--QIFVEKPLTLSLEESKAASEKV-KE 116

Query: 127 PDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVA--IREHRFPFLVKVNDWNRFNENT 184
             ++ QVG   R+ P  A   + + +G IG+        R+   P          F +++
Sbjct: 117 TGVICQVGFMRRFDPAYADAKRRIDAGEIGKPIYYKGFTRDQGAP-------PAEFIKHS 169

Query: 185 GGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFEN 244
           GG  ++   H +D+ R  +G+    V   G +  N   E Y       +D A   +EF++
Sbjct: 170 GGIFIDCSIHDYDIARYLLGAEITSVSGHGRILNNPFMEQYGD-----VDQALTYIEFDS 224

Query: 245 GSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAEDDR 304
           G+ G +      E S+        G+  + E    E  +   T       + + K     
Sbjct: 225 GAAGDV------EASRTSP----YGHDIRAEVIGTEGSIFIGTLRHQHVTILSAKGSSFD 274

Query: 305 I--EYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKG 358
           I  +++   H +  LE  +F   +R    K P V   D  I++ +G+AA  S   G
Sbjct: 275 IIPDFQTRFHEAYCLELQHFAECVR--NGKTPIVTDIDATINLEVGIAATNSFRNG 328

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|O34371|YTET_BACSU Putative oxidoreductase YteT OS=Bacillus subtilis (strain 168) GN=yteT PE=2 SV=1

 Score = 77.8 bits (190), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 80/161 (49%), Gaps = 5/161 (3%)

Query: 68  ELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRP 127
           E++     D+V+V+  + TH   ++  +       V+ EKP+ TTV D  +V++A  K  
Sbjct: 65  EMMRVSKPDIVIVAGRDDTHVAYIVKSLQWNT--DVITEKPMVTTVQDANRVLEAEAKS- 121

Query: 128 DILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREH--RFPFLVKVNDWNRFNENTG 185
           +  V V   YRY P   K+ +++  G IG+V  V +  +   +        WNR  + +G
Sbjct: 122 EGKVTVAFNYRYSPFHRKIKEMILDGKIGRVTSVDLNWYIDTYHGASYFKRWNRSRQFSG 181

Query: 186 GTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYN 226
           G  V K  H FDL+  ++G NP  V A GA++    D  +N
Sbjct: 182 GLSVHKSTHHFDLVNWWLGQNPEEVFAYGALNYYGPDSEWN 222

May play a role in the degradation of type I rhamnogalacturonan derived from plant cell walls.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|A7ZAH5|IOLG_BACA2 Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase OS=Bacillus amyloliquefaciens (strain FZB42) GN=iolG PE=3 SV=1

 Score = 77.4 bits (189), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 88/356 (24%), Positives = 155/356 (43%), Gaps = 38/356 (10%)

Query: 7   VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGH 66
           ++ G+IG G +G+EH IN    +  G  +  + D + ++ QQ ++    F+    V+P  
Sbjct: 3   LRIGVIGTGAIGKEH-INRITNKLSGAEITAVTDVNQEAAQQTVQ---DFNLNASVYPDD 58

Query: 67  QELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKR 126
             LL +   D V+V++    H   ++  I H K  HV  EKPL TT   C ++V+   K 
Sbjct: 59  DSLLAAENVDAVLVTSWGPAHESSVLKAIQHGK--HVFCEKPLATTAEGCMRIVEEEMKT 116

Query: 127 PDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENTGG 186
              LVQVG   RY     +L + + +  +G+  M+    HR P +         N +T  
Sbjct: 117 GKRLVQVGFMRRYDSGYVQLKEAIDNRVVGEPLMIHC-AHRNPTVAS-------NYSTEM 168

Query: 187 TLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENG- 245
            +V+   H  D++   V  +        +V V +  +  N  +P + D   VI+E + G 
Sbjct: 169 AVVDTLVHEIDVLHWLVNDD------YESVQVIYPKKSKNA-LPHLKDPQMVIIETKGGI 221

Query: 246 --SRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAEDD 303
             +  +   C +    + E    +VG  G  +   P SI   + R+ G+     L     
Sbjct: 222 VINAEIYVNCKYGYDIQCE----IVGEDGIIKLPEPSSI---SLRKEGKFSTDIL----- 269

Query: 304 RIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGR 359
            ++++     +  +E  +F+ +IR KG +V      DG I+     A   + E G+
Sbjct: 270 -MDWQRRFVAAYDVEIQDFIDSIRNKG-EVSGPTAWDGYIAAVTTDACVKAQESGQ 323

Involved in the oxidation of myo-inositol (MI) and D-chiro-inositol (DCI) to 2-keto-myo-inositol (2KMI or 2-inosose) and 1-keto-D-chiro-inositol (1KDCI), respectively.

Bacillus amyloliquefaciens (strain FZB42) (taxid: 326423)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 6

>sp|Q54728|Y1686_STRPN Uncharacterized oxidoreductase SP_1686 OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=SP_1686 PE=3 SV=2

 Score = 76.6 bits (187), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 111/248 (44%), Gaps = 24/248 (9%)

Query: 7   VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADP---HLQSRQQALKLANAFDWPLKVF 63
           VKYG++G G  G E  +  +  ++ G  +  + DP      + +   K+A++ D      
Sbjct: 2   VKYGVVGTGYFGAE--LARYMQKNDGAEITLLYDPDNAEAIAEELGAKVASSLD------ 53

Query: 64  PGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAA 123
               EL+ S   D V+V+TPN  H + ++    H K  +V  EKP+  +  DC+++VDA 
Sbjct: 54  ----ELVSSDEVDCVIVATPNNLHKEPVIKAAQHGK--NVFCEKPIALSYQDCREMVDAC 107

Query: 124 RKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNEN 183
            K  ++    G    +   V    +++  G IG V       + +        W +  E 
Sbjct: 108 -KENNVTFMAGHIMNFFNGVHHAKELINQGVIGDVLYCHTARNGWEEQQPSVSWKKIREK 166

Query: 184 TGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFE 243
           +GG L     H  D ++  +G  P  V  +G  +V H+ E + G   D+I   +V +EF 
Sbjct: 167 SGGHLYHH-IHELDCVQFLMGGMPETVTMTGG-NVAHEGEHF-GDEDDMI---FVNMEFS 220

Query: 244 NGSRGMLD 251
           N    +L+
Sbjct: 221 NKRFALLE 228

Streptococcus pneumoniae (taxid: 1313)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|A4FK61|IOLG4_SACEN Inositol 2-dehydrogenase 4 OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=iolG4 PE=3 SV=1

 Score = 76.3 bits (186), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 109/250 (43%), Gaps = 36/250 (14%)

Query: 3   ANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQA---LKLANAFDWP 59
           +N  ++ G++G G+MG +H   +H  R  G S+V + DP L+  ++A   ++       P
Sbjct: 2   SNRELRVGLVGAGLMGSDHATRIHR-RISGASLVAVGDPDLERAERAAAGIEGCQVETDP 60

Query: 60  LKVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKV 119
           LKV       +++   D VV++TP  TH  +L+  I    P  VL EKPL        +V
Sbjct: 61  LKV-------IEASDVDAVVLATPGRTHEPLLLAAIERGIP--VLCEKPLTPDSKSSLRV 111

Query: 120 VDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNR 179
           V+A       LVQVG   R+ P  A+L + + +G++G+           P L+     N 
Sbjct: 112 VEAEVAAGRRLVQVGFMRRFDPEYAELKRTLHAGALGR-----------PLLMHCAHRN- 159

Query: 180 FNENTGGT----LVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDN 235
            +   G T    + +   H FD  R  +G          AV V H     N     + D 
Sbjct: 160 ASAPPGFTSQMMIFDSVVHEFDTTRWLLGEEIT------AVSVRHPRSTANAP-SGMTDP 212

Query: 236 AYVIVEFENG 245
             V +E  +G
Sbjct: 213 QLVTIETASG 222

Involved in the oxidation of myo-inositol (MI) to 2-keto-myo-inositol (2KMI or 2-inosose).

Saccharopolyspora erythraea (strain NRRL 23338) (taxid: 405948)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	376
255579635	374	oxidoreductase, putative [Ricinus commun	0.973	0.978	0.849	0.0
356514368	371	PREDICTED: uncharacterized oxidoreductas	0.976	0.989	0.833	0.0
224071114	376	predicted protein [Populus trichocarpa]	0.965	0.965	0.826	0.0
357476817	373	Inositol 2-dehydrogenase [Medicago trunc	0.981	0.989	0.818	1e-180
449469377	372	PREDICTED: inositol 2-dehydrogenase 2-li	0.976	0.986	0.795	1e-176
449488660	372	PREDICTED: inositol 2-dehydrogenase 2-li	0.976	0.986	0.795	1e-176
42566900	368	Oxidoreductase family protein [Arabidops	0.954	0.975	0.756	1e-163
297804448	368	oxidoreductase family protein [Arabidops	0.954	0.975	0.750	1e-162
89257649	397	oxidoreductase family protein [Brassica	0.968	0.916	0.741	1e-162
242080541	376	hypothetical protein SORBIDRAFT_07g00322	0.960	0.960	0.734	1e-160

>gi|255579635|ref|XP_002530658.1| oxidoreductase, putative [Ricinus communis] gi|223529791|gb|EEF31727.1| oxidoreductase, putative [Ricinus communis]

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/366 (84%), Positives = 337/366 (92%)

Query: 4   NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF 63
           +DTVKYGIIG GMMGREH INLHHLR Q V+VVCIADPH+ S+Q A++ A +FDWPLKVF
Sbjct: 2   SDTVKYGIIGTGMMGREHLINLHHLRHQNVAVVCIADPHVPSQQLAIEFAQSFDWPLKVF 61

Query: 64  PGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAA 123
            GHQELLDSGLCD VVVS+PNMTHYQILMDIINHPKPHHVLVEKPLCTTVADC KVVDAA
Sbjct: 62  SGHQELLDSGLCDAVVVSSPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCMKVVDAA 121

Query: 124 RKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNEN 183
           RKR D+LVQVGLEYRYMPPVAKLI+IVK GS+GQVKMVAIREHRFPFLVKVNDWNRFN N
Sbjct: 122 RKRSDMLVQVGLEYRYMPPVAKLIEIVKGGSLGQVKMVAIREHRFPFLVKVNDWNRFNAN 181

Query: 184 TGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFE 243
           TGGTLVEKCCHFFDLMRLF G+NP+RVMASGA+DVNHKDE+Y+GKVPDIIDNAYV++EF+
Sbjct: 182 TGGTLVEKCCHFFDLMRLFAGANPVRVMASGAIDVNHKDEVYDGKVPDIIDNAYVVIEFD 241

Query: 244 NGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAEDD 303
           N SRGMLDLCMFAEGSKNEQEI VVG+ GKGEAFVPE+IVR  TR AGR+ VQT KAED 
Sbjct: 242 NSSRGMLDLCMFAEGSKNEQEISVVGDIGKGEAFVPENIVRLGTRVAGRDGVQTFKAEDG 301

Query: 304 RIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAI 363
           RI+Y+GLHHGSSYLEHLNFL AIRAKG K PAVDLQDGLISVAIGVAAQLSIEKGRF+ I
Sbjct: 302 RIKYDGLHHGSSYLEHLNFLYAIRAKGEKAPAVDLQDGLISVAIGVAAQLSIEKGRFVMI 361

Query: 364 EEVMEE 369
            EVM+E
Sbjct: 362 SEVMDE 367

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514368|ref|XP_003525878.1| PREDICTED: uncharacterized oxidoreductase yrbE-like [Glycine max]

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 306/367 (83%), Positives = 343/367 (93%)

Query: 3   ANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKV 62
           A   VKYGIIG+GMMGREH +NL+HLR+QGV+VV IADPHL S+Q AL LA++F WPLKV
Sbjct: 2   AGAIVKYGIIGVGMMGREHLVNLYHLRTQGVAVVAIADPHLPSQQLALDLAHSFTWPLKV 61

Query: 63  FPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDA 122
           F GHQELLDSGLCDV+VVSTPNMTH++ILMDIINH KPHHVLVEKPLCTT++ CK+VV+A
Sbjct: 62  FSGHQELLDSGLCDVLVVSTPNMTHHRILMDIINHSKPHHVLVEKPLCTTISHCKEVVNA 121

Query: 123 ARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNE 182
           ARKRPDILVQVGLEYRYMPPVAKLI+IVK G++G VKMVAIREHRFPFLVKVN+WNRFN 
Sbjct: 122 ARKRPDILVQVGLEYRYMPPVAKLIEIVKGGNLGHVKMVAIREHRFPFLVKVNNWNRFNI 181

Query: 183 NTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEF 242
           N+GGTLVEKCCHFFDLMRLFVG+NP+RVMASGA+DVNHKDE+Y+GKVPDIIDNAYVIVEF
Sbjct: 182 NSGGTLVEKCCHFFDLMRLFVGANPVRVMASGAIDVNHKDEVYDGKVPDIIDNAYVIVEF 241

Query: 243 ENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAED 302
           +NGSRGMLDLCMFAEGSKNEQEI VVG+ GKGEAFVPES+V+F TREAGR+ VQTLKAED
Sbjct: 242 DNGSRGMLDLCMFAEGSKNEQEISVVGDIGKGEAFVPESVVQFGTREAGRDGVQTLKAED 301

Query: 303 DRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIA 362
            RI+Y+GLHHGSSYLEHLNFLSAIRAKG K P+VDLQDGLISVA+GVAAQLSIE GRF++
Sbjct: 302 HRIKYDGLHHGSSYLEHLNFLSAIRAKGEKAPSVDLQDGLISVAMGVAAQLSIEYGRFVS 361

Query: 363 IEEVMEE 369
           I+EVM E
Sbjct: 362 IQEVMNE 368

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071114|ref|XP_002303360.1| predicted protein [Populus trichocarpa] gi|222840792|gb|EEE78339.1| predicted protein [Populus trichocarpa]

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 300/363 (82%), Positives = 339/363 (93%)

Query: 7   VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGH 66
           VKYGI+G+GMMGREH INL+HLRSQ V VV IADPH+ S+Q A++LA +F W L+VF GH
Sbjct: 11  VKYGIVGVGMMGREHLINLYHLRSQNVGVVAIADPHVPSQQLAVELAQSFGWHLEVFSGH 70

Query: 67  QELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKR 126
           +ELLDSGLCDVVVVS+PNMTHY+ILMDII+HPKPHHVLVEKPLCTTVADCKKVVDAAR+R
Sbjct: 71  RELLDSGLCDVVVVSSPNMTHYRILMDIISHPKPHHVLVEKPLCTTVADCKKVVDAARRR 130

Query: 127 PDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENTGG 186
            D+LVQVGLEYRYMPPVAKLI++V+ G++GQVKMVAIREHRFPFLVKV++WNRFN NTGG
Sbjct: 131 TDMLVQVGLEYRYMPPVAKLIEVVRGGAVGQVKMVAIREHRFPFLVKVDNWNRFNANTGG 190

Query: 187 TLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENGS 246
           TLVEKCCHFFDLM+LF G+NP+RVMASGA+DVNHKDE+Y+GKVPDIIDNAYVIVEF+NGS
Sbjct: 191 TLVEKCCHFFDLMKLFAGANPVRVMASGAIDVNHKDEVYDGKVPDIIDNAYVIVEFDNGS 250

Query: 247 RGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAEDDRIE 306
           RGMLDLCMFAEGSKNEQEI VVG+ GKGEAFVPES+VRF TR AGR+ VQTLKAED RI+
Sbjct: 251 RGMLDLCMFAEGSKNEQEISVVGDIGKGEAFVPESLVRFGTRVAGRDGVQTLKAEDRRIK 310

Query: 307 YEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAIEEV 366
           Y+GLHHGSSYLEHL FLSA+RAKG K PAVDLQDGLISVAIGVAAQLSIEKG+F+ I+EV
Sbjct: 311 YDGLHHGSSYLEHLTFLSAVRAKGEKAPAVDLQDGLISVAIGVAAQLSIEKGQFVTIQEV 370

Query: 367 MEE 369
           M+E
Sbjct: 371 MDE 373

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476817|ref|XP_003608694.1| Inositol 2-dehydrogenase [Medicago truncatula] gi|355509749|gb|AES90891.1| Inositol 2-dehydrogenase [Medicago truncatula]

 Score =  638 bits (1646), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 302/369 (81%), Positives = 336/369 (91%)

Query: 2   AANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLK 61
            A   VKYGIIG+GMMGREH INLHHL ++ V+VV IADPHL S+Q A+ LA++F WPLK
Sbjct: 3   TATVVVKYGIIGVGMMGREHLINLHHLCNENVAVVAIADPHLPSQQLAINLAHSFSWPLK 62

Query: 62  VFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVD 121
           VF GH+ELLDSGLCDV+VVSTPNMTHY ILMDIINH KPHHVLVEKPLCTTV+ CK+VV 
Sbjct: 63  VFSGHKELLDSGLCDVLVVSTPNMTHYSILMDIINHSKPHHVLVEKPLCTTVSHCKEVVR 122

Query: 122 AARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFN 181
           AARKRPDILVQVGLEYRYMPPVAKLI+IV  GS+G V+MV+IREHRFPFLVKVN+WNRFN
Sbjct: 123 AARKRPDILVQVGLEYRYMPPVAKLIEIVNGGSLGHVRMVSIREHRFPFLVKVNNWNRFN 182

Query: 182 ENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVE 241
            N+GGTLVEKCCHFFDLMRLFVG+NP+RVMASGA+DVNHKDE+Y+GKVPDIIDNAYVIVE
Sbjct: 183 VNSGGTLVEKCCHFFDLMRLFVGANPVRVMASGAIDVNHKDEIYDGKVPDIIDNAYVIVE 242

Query: 242 FENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAE 301
           F+NGSRGMLDLCMFAEGSKNEQEI VVG+ GKGEAFVPES+VR  TREAGR+ VQ++KAE
Sbjct: 243 FDNGSRGMLDLCMFAEGSKNEQEISVVGDIGKGEAFVPESVVRLGTREAGRDGVQSVKAE 302

Query: 302 DDRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFI 361
           D RI+Y+GLHHGSSYLEHLNFL AIR KG KVPAVDLQDGLISVAIGVAAQLSIE GRF+
Sbjct: 303 DPRIKYDGLHHGSSYLEHLNFLGAIRGKGEKVPAVDLQDGLISVAIGVAAQLSIENGRFV 362

Query: 362 AIEEVMEEL 370
            I+EVM+ L
Sbjct: 363 TIQEVMDGL 371

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469377|ref|XP_004152397.1| PREDICTED: inositol 2-dehydrogenase 2-like [Cucumis sativus]

 Score =  624 bits (1608), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 292/367 (79%), Positives = 331/367 (90%)

Query: 2   AANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLK 61
           + + T+KYGIIG+GMMGREH +NL HL+ +GV+VV IADPH  S++QAL LA +F W ++
Sbjct: 6   STHSTIKYGIIGVGMMGREHLLNLFHLQDKGVAVVAIADPHASSQRQALDLAQSFGWKME 65

Query: 62  VFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVD 121
           VF GHQELLDSGLCDV+VVSTPNMTHYQILMDIINHP+PHHVLVEKPLCTTVA CK+VV 
Sbjct: 66  VFSGHQELLDSGLCDVLVVSTPNMTHYQILMDIINHPRPHHVLVEKPLCTTVAHCKEVVM 125

Query: 122 AARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFN 181
           AA+KR DILVQVGLEYRYMPPVAKLI IVK GS+GQVKMVAIREHRFPFLVKVN+WNRFN
Sbjct: 126 AAKKREDILVQVGLEYRYMPPVAKLIDIVKGGSLGQVKMVAIREHRFPFLVKVNNWNRFN 185

Query: 182 ENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVE 241
            NTGGTLVEKCCHFFDLMRL  G+NP+R+MASGA+DVNHKDEMY+GKVPDI+DNAYVIVE
Sbjct: 186 TNTGGTLVEKCCHFFDLMRLIAGANPIRLMASGAIDVNHKDEMYDGKVPDILDNAYVIVE 245

Query: 242 FENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAE 301
           F+NGSRG+LDLCMFAEGSKNEQEI VVG+ GKGEAFVPE+IVRF TR +GR  V+TLKAE
Sbjct: 246 FDNGSRGILDLCMFAEGSKNEQEISVVGDIGKGEAFVPENIVRFGTRVSGRNGVETLKAE 305

Query: 302 DDRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFI 361
           D RI+YEGLHHGSSYLEHLNFL A+R+K  +VP VDL+DGLISVA+GVAAQLSIE  RF+
Sbjct: 306 DHRIKYEGLHHGSSYLEHLNFLCAMRSKEREVPVVDLEDGLISVAMGVAAQLSIETSRFV 365

Query: 362 AIEEVME 368
            I EVM+
Sbjct: 366 TITEVMD 372

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449488660|ref|XP_004158134.1| PREDICTED: inositol 2-dehydrogenase 2-like [Cucumis sativus]

 Score =  622 bits (1605), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 292/367 (79%), Positives = 330/367 (89%)

Query: 2   AANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLK 61
           + + T+KYGIIG+GMMGREH +NL HL+ +GV+VV IADPH  S++QAL LA +F W ++
Sbjct: 6   STHSTIKYGIIGVGMMGREHLLNLFHLQDKGVAVVAIADPHASSQRQALDLAQSFGWKME 65

Query: 62  VFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVD 121
           VF GHQELLDSGLCDV+VVSTPNMTHYQILMDIINHP+PHHVLVEKPLCTTVA CK+VV 
Sbjct: 66  VFSGHQELLDSGLCDVLVVSTPNMTHYQILMDIINHPRPHHVLVEKPLCTTVAHCKEVVM 125

Query: 122 AARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFN 181
           AA+KR DILVQVGLEYRYMPPVAKLI IVK GS+GQVKMVAIREHRFPFLVKVN+WNRFN
Sbjct: 126 AAKKREDILVQVGLEYRYMPPVAKLIDIVKGGSLGQVKMVAIREHRFPFLVKVNNWNRFN 185

Query: 182 ENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVE 241
            NTGGTLVEKCCHFFDLMRL  G+NP+R+MASGA+DVNHKDEMY+GKVPDI+DNAYVIVE
Sbjct: 186 TNTGGTLVEKCCHFFDLMRLIAGANPIRLMASGAIDVNHKDEMYDGKVPDILDNAYVIVE 245

Query: 242 FENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAE 301
           F+NGSRGMLDLCMFAEGSKNEQEI VVG+ GKGEAFVPE+IVRF TR +GR  V+TLKAE
Sbjct: 246 FDNGSRGMLDLCMFAEGSKNEQEISVVGDIGKGEAFVPENIVRFGTRVSGRNGVETLKAE 305

Query: 302 DDRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFI 361
           D RI+YEGLHHGSSYLEHLNFL A+R +  +VP VDL+DGLISVA+GVAAQLSIE  RF+
Sbjct: 306 DHRIKYEGLHHGSSYLEHLNFLCAMRDREREVPVVDLEDGLISVAMGVAAQLSIETSRFV 365

Query: 362 AIEEVME 368
            I EVM+
Sbjct: 366 TITEVMD 372

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42566900|ref|NP_193468.2| Oxidoreductase family protein [Arabidopsis thaliana] gi|51536450|gb|AAU05463.1| At4g17370 [Arabidopsis thaliana] gi|53828611|gb|AAU94415.1| At4g17370 [Arabidopsis thaliana] gi|332658481|gb|AEE83881.1| Oxidoreductase family protein [Arabidopsis thaliana]

 Score =  580 bits (1494), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 273/361 (75%), Positives = 317/361 (87%), Gaps = 2/361 (0%)

Query: 7   VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGH 66
            KYGI+G+GMMGREH INLHHLR QG++VVCIADPH  S+  A++LA +F W LKVF GH
Sbjct: 10  TKYGIVGIGMMGREHLINLHHLRDQGLAVVCIADPHPPSQLLAIELAQSFGWELKVFSGH 69

Query: 67  QELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKR 126
           +ELL S LCDV+VVS+PNMTH+QILMDIIN+ KPHHVLVEKPLCTTVADCK+V++AA+KR
Sbjct: 70  EELLKSELCDVIVVSSPNMTHHQILMDIINYSKPHHVLVEKPLCTTVADCKQVLEAAKKR 129

Query: 127 PDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENTGG 186
            D++VQVGLEYRYMPPVAKLI+ VK    G VKMVAIREHRFPFLVKVN+WNRFN NTGG
Sbjct: 130 SDMVVQVGLEYRYMPPVAKLIEQVKGRDFGNVKMVAIREHRFPFLVKVNNWNRFNVNTGG 189

Query: 187 TLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENGS 246
           TLVEKCCHFFDLMRLF G+NP+ VMASG +DVNHKDE+Y GKVPDIIDNAYVI+EF+NG 
Sbjct: 190 TLVEKCCHFFDLMRLFAGANPVCVMASGGMDVNHKDEVYGGKVPDIIDNAYVIIEFDNGC 249

Query: 247 RGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAEDDRIE 306
           RGMLDLCMFAEGSKNEQEI V G+ GKGEA VPE IVR  +R  GRE VQT+KAED+RI+
Sbjct: 250 RGMLDLCMFAEGSKNEQEISVTGDIGKGEALVPEGIVRSGSRIGGREHVQTIKAEDERIK 309

Query: 307 YEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAIEEV 366
           YEGLHHGSSYLEHL FLSAIR +G  + AVDL+DGL++VA+GVAAQLSI++ R++ I+EV
Sbjct: 310 YEGLHHGSSYLEHLTFLSAIRGEG--IAAVDLEDGLMAVAMGVAAQLSIQERRYVTIDEV 367

Query: 367 M 367
           +
Sbjct: 368 L 368

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804448|ref|XP_002870108.1| oxidoreductase family protein [Arabidopsis lyrata subsp. lyrata] gi|297315944|gb|EFH46367.1| oxidoreductase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 271/361 (75%), Positives = 318/361 (88%), Gaps = 2/361 (0%)

Query: 7   VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGH 66
            KYGI+G+GMMGREH INLHHLR QG++VVCIADPH  S+  A++LA +F W LKVF GH
Sbjct: 10  TKYGIVGIGMMGREHLINLHHLRDQGLAVVCIADPHPPSQLLAIELARSFGWELKVFSGH 69

Query: 67  QELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKR 126
           +ELL S LCDV+VVS+PNMTH+QILMDII++PKPHHVLVEKPLCTTVADCK+V++AA+KR
Sbjct: 70  EELLKSELCDVIVVSSPNMTHHQILMDIISYPKPHHVLVEKPLCTTVADCKQVLEAAKKR 129

Query: 127 PDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENTGG 186
            D++VQVGLEYRYMPPVAKLI+ VK    G VKMVAIREHRFPFLVKVN+WNRFN NTGG
Sbjct: 130 SDMVVQVGLEYRYMPPVAKLIEKVKGRDFGNVKMVAIREHRFPFLVKVNNWNRFNVNTGG 189

Query: 187 TLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENGS 246
           TLVEKCCHFFDLMRLF G+NP+ VMASG +DVNHKDE+Y+GKVPDIIDNAYVI+EF+NG 
Sbjct: 190 TLVEKCCHFFDLMRLFAGANPVCVMASGGMDVNHKDEIYDGKVPDIIDNAYVIIEFDNGC 249

Query: 247 RGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAEDDRIE 306
           RGMLDLCMFAEGSKNEQEI V G+ GKGEA VPE IVR  +R  GR+ VQT+KAED+RI+
Sbjct: 250 RGMLDLCMFAEGSKNEQEISVTGDIGKGEALVPEGIVRSGSRVGGRKHVQTIKAEDERIK 309

Query: 307 YEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAIEEV 366
           YEGLHHGSSYLEHL FLSAIR +G    A+DL+DGL++VA+GVAAQLSI++ R++ I+EV
Sbjct: 310 YEGLHHGSSYLEHLTFLSAIRGEGR--AAIDLEDGLMAVAMGVAAQLSIQERRYVTIDEV 367

Query: 367 M 367
           +
Sbjct: 368 L 368

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|89257649|gb|ABD65136.1| oxidoreductase family protein [Brassica oleracea]

 Score =  576 bits (1484), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 272/367 (74%), Positives = 322/367 (87%), Gaps = 3/367 (0%)

Query: 1   MAANDTV-KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP 59
           MAAN  + KYGI+G+GMMGREH INLHHLR Q ++VV IADPH  S+  A++LA + +W 
Sbjct: 1   MAANSAITKYGIVGIGMMGREHLINLHHLRHQNLAVVSIADPHPPSQLLAIELARSLNWD 60

Query: 60  LKVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKV 119
           LKVF GH+ELL+S  CDV+VVS+PNMTH++ILMDII +PKPHH+LVEKPLCTTVADCK+V
Sbjct: 61  LKVFSGHEELLESETCDVIVVSSPNMTHHRILMDIIAYPKPHHILVEKPLCTTVADCKEV 120

Query: 120 VDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNR 179
           ++AA+KR D++VQVGLEYRYMPPVAKLI+ VK G  G VKMVAIREHRFPFLVKVN+WNR
Sbjct: 121 LEAAKKRSDMVVQVGLEYRYMPPVAKLIEKVKGGEFGDVKMVAIREHRFPFLVKVNNWNR 180

Query: 180 FNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVI 239
           FN NTGGTLVEKCCHFFDLMRLF  +NP+ VMASG +DVNHKDE+Y+GKVPDIIDNAYVI
Sbjct: 181 FNMNTGGTLVEKCCHFFDLMRLFASANPVCVMASGGMDVNHKDEVYDGKVPDIIDNAYVI 240

Query: 240 VEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLK 299
           +EF+NG RGMLDLCMFAEGSKNEQEI V G+ GKGEA VPE IVRF TRE GRE VQT+K
Sbjct: 241 IEFDNGCRGMLDLCMFAEGSKNEQEISVTGDIGKGEALVPEGIVRFGTREGGREHVQTIK 300

Query: 300 AEDDRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGR 359
           AED+RI+YEGLHHGSSYLEHL FLSAIR +G    AVDL+DGL++VA+GVAAQLSI++ R
Sbjct: 301 AEDERIKYEGLHHGSSYLEHLIFLSAIRGEGR--AAVDLEDGLMAVAMGVAAQLSIQERR 358

Query: 360 FIAIEEV 366
           +++++E+
Sbjct: 359 YVSMDEL 365

Source: Brassica oleracea

Species: Brassica oleracea

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242080541|ref|XP_002445039.1| hypothetical protein SORBIDRAFT_07g003220 [Sorghum bicolor] gi|241941389|gb|EES14534.1| hypothetical protein SORBIDRAFT_07g003220 [Sorghum bicolor]

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 271/369 (73%), Positives = 318/369 (86%), Gaps = 8/369 (2%)

Query: 7   VKYGIIGMGMMGREHFINLHHL-----RSQGVSV--VCIADPHLQSRQQALKLANAFDWP 59
           V+YGI+G+GMMGREH  NL HL     R Q V V    +ADPH +S +  L+LA     P
Sbjct: 6   VRYGIVGVGMMGREHLHNLAHLAAEVEREQAVRVRVTGLADPHQESLRLGLQLAAELGLP 65

Query: 60  L-KVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKK 118
             + F GH+ELLDSGLCD ++VS+PNMTHY+ILMDII H +PHH+LVEKPLCTTV DCKK
Sbjct: 66  APQTFSGHRELLDSGLCDAIIVSSPNMTHYEILMDIIRHREPHHILVEKPLCTTVQDCKK 125

Query: 119 VVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWN 178
           V++AA++RP+ILVQVGLEYRYMPPVAKLI IVKSG++GQV+MVAIREHRFPFLVKVN+WN
Sbjct: 126 VIEAAKQRPEILVQVGLEYRYMPPVAKLIDIVKSGTLGQVRMVAIREHRFPFLVKVNNWN 185

Query: 179 RFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYV 238
           RFN N+GGTLVEKCCHFFDLMRLF  +NP+RVMASGA+DVNHK+E+Y+GKVPDIIDNAYV
Sbjct: 186 RFNCNSGGTLVEKCCHFFDLMRLFAAANPVRVMASGAIDVNHKNEVYDGKVPDIIDNAYV 245

Query: 239 IVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTL 298
           IVEF+NGSRGMLDLCMFAEGS+NEQEI VVG+ GKGE FVPESIVRF  R  GR+ V T+
Sbjct: 246 IVEFDNGSRGMLDLCMFAEGSRNEQEISVVGDIGKGETFVPESIVRFGKRTEGRDGVVTI 305

Query: 299 KAEDDRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKG 358
            AED+RI+Y+GLHHGSSYLEHLNFLSAIRA+GA  P+V+L DGL+SVAIGVA QLSIE+G
Sbjct: 306 MAEDERIKYQGLHHGSSYLEHLNFLSAIRAQGASGPSVNLSDGLLSVAIGVAGQLSIEQG 365

Query: 359 RFIAIEEVM 367
           RF+ +EEV+
Sbjct: 366 RFVTMEEVL 374

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	376
TAIR|locus:2130903	368	AT4G17370 [Arabidopsis thalian	0.952	0.972	0.758	6.9e-150
ASPGD|ASPL0000026474	350	AN5425 [Emericella nidulans (t	0.901	0.968	0.267	2.6e-18
ASPGD|ASPL0000007703	355	AN5984 [Emericella nidulans (t	0.909	0.963	0.260	1.5e-16
DICTYBASE|DDB_G0274185	430	DDB_G0274185 "putative oxidore	0.558	0.488	0.279	6.9e-16
DICTYBASE|DDB_G0287323	430	DDB_G0287323 "putative oxidore	0.531	0.465	0.287	6.2e-15
ASPGD|ASPL0000044430	355	AN2378 [Emericella nidulans (t	0.659	0.698	0.269	1.8e-14
TIGR_CMR|BA_2511	341	BA_2511 "oxidoreductase, NAD-b	0.651	0.718	0.258	2.6e-14
UNIPROTKB|G4NFW1	437	MGG_08695 "NAD-binding Rossman	0.534	0.459	0.259	2e-13
ASPGD|ASPL0000068914	427	AN7156 [Emericella nidulans (t	0.521	0.459	0.286	9.6e-13
UNIPROTKB|P39353	372	yjhC [Escherichia coli K-12 (t	0.890	0.900	0.244	1.1e-11

TAIR|locus:2130903 AT4G17370 [Arabidopsis thaliana (taxid:3702)]

 Score = 1463 (520.1 bits), Expect = 6.9e-150, P = 6.9e-150
 Identities = 273/360 (75%), Positives = 317/360 (88%)

Query:     8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQ 67
             KYGI+G+GMMGREH INLHHLR QG++VVCIADPH  S+  A++LA +F W LKVF GH+
Sbjct:    11 KYGIVGIGMMGREHLINLHHLRDQGLAVVCIADPHPPSQLLAIELAQSFGWELKVFSGHE 70

Query:    68 ELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRP 127
             ELL S LCDV+VVS+PNMTH+QILMDIIN+ KPHHVLVEKPLCTTVADCK+V++AA+KR 
Sbjct:    71 ELLKSELCDVIVVSSPNMTHHQILMDIINYSKPHHVLVEKPLCTTVADCKQVLEAAKKRS 130

Query:   128 DILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENTGGT 187
             D++VQVGLEYRYMPPVAKLI+ VK    G VKMVAIREHRFPFLVKVN+WNRFN NTGGT
Sbjct:   131 DMVVQVGLEYRYMPPVAKLIEQVKGRDFGNVKMVAIREHRFPFLVKVNNWNRFNVNTGGT 190

Query:   188 LVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENGSR 247
             LVEKCCHFFDLMRLF G+NP+ VMASG +DVNHKDE+Y GKVPDIIDNAYVI+EF+NG R
Sbjct:   191 LVEKCCHFFDLMRLFAGANPVCVMASGGMDVNHKDEVYGGKVPDIIDNAYVIIEFDNGCR 250

Query:   248 GMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAEDDRIEY 307
             GMLDLCMFAEGSKNEQEI V G+ GKGEA VPE IVR  +R  GRE VQT+KAED+RI+Y
Sbjct:   251 GMLDLCMFAEGSKNEQEISVTGDIGKGEALVPEGIVRSGSRIGGREHVQTIKAEDERIKY 310

Query:   308 EGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAIEEVM 367
             EGLHHGSSYLEHL FLSAIR +G  + AVDL+DGL++VA+GVAAQLSI++ R++ I+EV+
Sbjct:   311 EGLHHGSSYLEHLTFLSAIRGEG--IAAVDLEDGLMAVAMGVAAQLSIQERRYVTIDEVL 368

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

ASPGD|ASPL0000026474 AN5425 [Emericella nidulans (taxid:162425)]

 Score = 237 (88.5 bits), Expect = 2.6e-18, P = 2.6e-18
 Identities = 98/366 (26%), Positives = 157/366 (42%)

Query:    11 IIGMGMMGREH-FINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQEL 69
             ++G+G MG+ H +  L+ +    V  VC  +PH    + A   A   ++ + V+  + ++
Sbjct:     7 VVGLGRMGKRHVYTLLYRVPRARVVAVCTTEPH--EIEWAKSNAEYTEFGIAVYDDYDDM 64

Query:    70 LDSGL-CDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPD 128
             L S        VST    H    +  I   K  HVL EKP+ T +A  + VVDAA+  P 
Sbjct:    65 LASQADLHAAWVSTSTDVHAVQSLKAIE--KGLHVLCEKPISTDLAKAQSVVDAAKANPQ 122

Query:   129 ILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENTGGTL 188
             + V  G   R+        Q +++G+IG   +V  R +      +   + R+    GG  
Sbjct:   123 LKVMAGFSRRFDASYRDAAQKIQNGTIGSPFLV--RSNTCDLKDETGFFVRYAARNGGIF 180

Query:   189 VEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENGSRG 248
             V+   H  DL  L+   NP+   A  A  + H  E+      D+ DNA  IVEF  G   
Sbjct:   181 VDCAIHDIDLT-LWYMDNPVPKAAWAAGTLQHHPELAENN--DV-DNAVGIVEFWGGKIA 236

Query:   249 MLDLCMFAEGSKNEQEIVVVGNTGKGEA-FVPESI-VRFATREAGREDVQTLKAEDDRIE 306
                 C   +   ++    + G  GK     +P +  V  A +   R +VQ         E
Sbjct:   237 YF-YCSRTQAHGHDVLTEITGTDGKIMVNVIPRANNVVVADKGGMRHEVQP--------E 287

Query:   307 Y-EGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAIEE 365
             Y +   H  + LE   F+ A+  +   VP V+L+ G+  + IG A Q ++  G  +   +
Sbjct:   288 YWQRFEHAFA-LEANEFVDAV-LQDKPVP-VNLETGMTVMKIGQALQHALLSGEVVKFNK 344

Query:   366 VMEELN 371
               E LN
Sbjct:   345 NGERLN 350

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

ASPGD|ASPL0000007703 AN5984 [Emericella nidulans (taxid:162425)]

 Score = 224 (83.9 bits), Expect = 1.5e-16, P = 1.5e-16
 Identities = 96/368 (26%), Positives = 155/368 (42%)

Query:     1 MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL 60
             MAA   +K G  G+G MG+ H +N    R+    +V  + P     + A K+ +   + +
Sbjct:     1 MAAK-RLKIGCAGLGRMGKRHALNFLE-RTPRAELVAASTPDDTEIEWA-KV-HLEPYGV 56

Query:    61 KVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVV 120
             K++  + ++L     + V+V++    H +  +  I   K  HVL EKPL T+V   + V+
Sbjct:    57 KLYKNYDDMLKHEGLEAVIVASATAVHAEQAIKAIEAEK--HVLCEKPLSTSVEISQSVL 114

Query:   121 DAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRF 180
             DAA  +P + V  G   R+          + SG++G   +  IR      L     +  +
Sbjct:   115 DAANAKPHLKVMCGFSRRFDASYRDAYNKMSSGALGTPSV--IRSQTCDKLDPTGFFVAY 172

Query:   181 NENTGGTLVEKCCHFFDLMRLFVG--SNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYV 238
              E +GG  V+   H  DL   F G  S    V A G   V      +N +     DNA  
Sbjct:   173 AEFSGGIFVDCSIHDIDLTLWFFGQDSKVRSVSAVGITAVEPDLRKHNDR-----DNAVG 227

Query:   239 IVEFENGSRGMLDLC-MFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQT 297
             +VEF +G         M A G ++  E +  G  GK        +    T +AG    + 
Sbjct:   228 LVEFYDGKMAYFYASRMMAAGQEDTSEFI--GTKGKVTVNAQPQLNLVQTFDAGGVKKEI 285

Query:   298 LKAEDDRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEK 357
              +   DR EY       +++   N  +A   +   VP + L+  + +V IG A Q S+  
Sbjct:   286 PQHYYDRFEY-------AFVTEANEFTAAVLENKPVP-LKLEGAVQAVRIGAALQESLIT 337

Query:   358 GRFIAIEE 365
             G  I  +E
Sbjct:   338 GEKIFFDE 345

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0274185 DDB_G0274185 "putative oxidoreductase, Gfo/Idh/MocA family" [Dictyostelium discoideum (taxid:44689)]

 Score = 204 (76.9 bits), Expect = 6.9e-16, Sum P(2) = 6.9e-16
 Identities = 64/229 (27%), Positives = 113/229 (49%)

Query:     4 NDTVKYGIIGMGMMGREHFINLHHL-RSQGVSVVCIADPHLQSRQQALKLANAFDWPLK- 61
             N  VK  IIG G  G  +  + + + R   + +V + DP ++ R+  L   N F      
Sbjct:    15 NKIVKLIIIGCGQRG--YVYSRYSIERPNRLKIVAVCDP-IKFRRDTL--GNEFGLSSDM 69

Query:    62 VFPGHQELLDSG-LCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVV 120
             +F   ++++      D V+++TP+  H +  +   N  K +H+LVEKPL  T  DC+++ 
Sbjct:    70 IFENWKDIISMDKFADAVLIATPDQLHCEPAIAFAN--KKYHLLVEKPLAITEKDCERIT 127

Query:   121 DAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIRE-----HRFPFLVKVN 175
              A  K  ++++ V    RY P   K+ Q++ SG IG+V  +   E     H     V+ N
Sbjct:   128 SAC-KANNVMLSVCHVLRYSPVNIKIKQLIDSGLIGEVLNIQHLEPVGYYHHAHSYVRGN 186

Query:   176 DWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMAS-GAVDVNHKDE 223
              W + + +T   L+ K CH  DL+  F+G    + ++S G++    K++
Sbjct:   187 -WRKLSTSTF-MLLAKSCHDLDLIHYFMGGKKCKKVSSFGSLTYFKKEK 233

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0287323 DDB_G0287323 "putative oxidoreductase, Gfo/Idh/MocA family" [Dictyostelium discoideum (taxid:44689)]

 Score = 197 (74.4 bits), Expect = 6.2e-15, Sum P(2) = 6.2e-15
 Identities = 63/219 (28%), Positives = 107/219 (48%)

Query:     4 NDT-VKYGIIGMGMMGREHFINLHHL--RSQGVSVVCIADPHLQSRQQALKLANAFDWPL 60
             ND  VK  IIG G  G   F+   +   R   + +V + DP ++ R+    L    +  +
Sbjct:    14 NDKIVKLIIIGCGQRG---FVYSRYAIERPNRLKIVAVCDP-IKFRRDKFGLEFGLNSNM 69

Query:    61 KVFPGHQELLD-SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKV 119
              +F    E++      D V+++TP+  H +  +   +  K +H+LVEKPL  T+ DC+K+
Sbjct:    70 -IFENWNEIISIDKFADAVLIATPDQLHCEPAIAFAS--KKYHLLVEKPLAITLEDCEKI 126

Query:   120 VDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIRE-----HRFPFLVKV 174
               AA K  ++++ V    RY P   K+  ++ SG IG+V  +   E     H+    V+ 
Sbjct:   127 T-AACKANNVMLSVCHVLRYAPVNIKIKHLIDSGLIGEVLNIQHLEPVGYYHQAHSYVRG 185

Query:   175 NDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMAS 213
             N W   + +T   L+ K CH  DL+  F+G    + ++S
Sbjct:   186 N-WRNLSGSTF-MLLSKSCHDLDLIHYFMGGRKCKKVSS 222

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

ASPGD|ASPL0000044430 AN2378 [Emericella nidulans (taxid:162425)]

 Score = 207 (77.9 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 74/275 (26%), Positives = 120/275 (43%)

Query:     7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGH 66
             ++ G  G+G MG+ H +N  + R+    +V    P  +  Q A +    +   + ++  +
Sbjct:     6 LQVGAAGLGRMGKRHALNFLN-RAPRAELVAAFSPDPEEVQWAKQHLEPYG--VTLYTNY 62

Query:    67 QELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKR 126
             ++++       VV+ T    H +  +  +   +  HVL EKPL   V  C +VV AA+KR
Sbjct:    63 EDMISHPGLQAVVIGTATSVHAEEAIKAME--RDLHVLCEKPLSINVDICNEVVAAAKKR 120

Query:   127 PDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIR--EHRFP--FLVKVNDWNRFNE 182
             P + V  G   R+        + V++G IG+  ++  +  +   P  F V+   W+    
Sbjct:   121 PHLKVMCGFSRRFDESYRAAYRKVENGLIGRPSILRSQTCDKHDPSGFYVEYASWS---- 176

Query:   183 NTGGTLVEKCCHFFDLMRLFVGSN--PMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIV 240
               GG  V+   H  DL   F GS+  P  + A G   V    + YN       DNA  +V
Sbjct:   177 --GGVFVDMAVHDIDLTLWFFGSDIIPKSISAYGITAVTPDLKKYND-----FDNAVGVV 229

Query:   241 EFENGSRGMLDLC--MFAEGSKNEQEIVVVGNTGK 273
             EF  G       C  M A G ++  EI+  G  GK
Sbjct:   230 EFYGGKIAYF-YCSRMMAHGQEDVTEII--GTEGK 261

GO:0005575 "cellular_component" evidence=ND

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

TIGR_CMR|BA_2511 BA_2511 "oxidoreductase, NAD-binding" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 205 (77.2 bits), Expect = 2.6e-14, P = 2.6e-14
 Identities = 70/271 (25%), Positives = 127/271 (46%)

Query:     5 DTVKYGIIGMGMMGREHFINLH---HLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLK 61
             + +K GIIG G +G+ H  NL     ++ + VS V I   HL+   Q   ++        
Sbjct:     2 NVLKIGIIGAGRIGKLHVDNLQLMPQVKIKAVSDVVIG--HLEKWAQDKGIST------- 52

Query:    62 VFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVD 121
             +   +Q+LL     D V + +P  TH QI+ +     K  H+  EKP+  +V +  + ++
Sbjct:    53 LTTNYQDLLADPEIDAVFICSPTNTHAQIIKEAALAKK--HIFCEKPVSFSVEETLEALE 110

Query:   122 AARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFN 181
               +++  + +QVG   R+ P   K+   ++ G +GQ  ++ I   R P    +     + 
Sbjct:   111 VVKEQ-GVSLQVGFNRRFDPNFRKVYDFIQQGEVGQPHILKITS-RDPQPPSIE----YV 164

Query:   182 ENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVE 241
              ++GG  ++   H FD+ R  + S  + V A G   ++   +    +V D+ D A V ++
Sbjct:   165 RSSGGLFMDMMIHDFDMARYVMNSEVVEVFAYGTTLIDPSIQ----EVHDV-DTAIVTLK 219

Query:   242 FENGSRGMLDLCMFAEGSKNEQEIVVVGNTG 272
             F NG+ G++D    A     +Q + V G  G
Sbjct:   220 FANGALGVIDNSRQAVYGY-DQRVEVFGEKG 249

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

UNIPROTKB|G4NFW1 MGG_08695 "NAD-binding Rossmann fold oxidoreductase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 177 (67.4 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
 Identities = 57/220 (25%), Positives = 99/220 (45%)

Query:     8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQA-LKLANAFDWPLKVF--P 64
             +Y ++G G     ++  +    S    VV   D +      A  +LA     P+  +  P
Sbjct:     9 RYALVGTGGRAGFYYTAIAKTYSSTSEVVAFCDTNQTRMDYANAQLAQLGHGPVPTYKAP 68

Query:    65 GHQ-ELLDSGLC----DVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKV 119
             G      D+ +     D ++V+T + TH+  ++  +      +V+ EKP+      C+++
Sbjct:    69 GDGGSAFDTMVAETKPDEIIVTTIDRTHHTYIVRALE--LGCNVVTEKPMTIDGPRCREI 126

Query:   120 VDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIR-----EHRFPFLVKV 174
              DA  +R    V+V   YRY P   K+ ++++SG+IG V  V         H   +  + 
Sbjct:   127 FDAV-ERTGNRVRVTFNYRYAPHNTKVAELIRSGAIGTVTSVHFEWMLNTSHGADYFRR- 184

Query:   175 NDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASG 214
               W+R   N+GG LV K  H FDL+  ++ + P  V A G
Sbjct:   185 --WHRDRRNSGGLLVHKSTHHFDLVNFWLRTRPATVYAQG 222

GO:0005575 "cellular_component" evidence=ND

ASPGD|ASPL0000068914 AN7156 [Emericella nidulans (taxid:162425)]

 Score = 183 (69.5 bits), Expect = 9.6e-13, Sum P(2) = 9.6e-13
 Identities = 63/220 (28%), Positives = 100/220 (45%)

Query:     8 KYGIIGMGMMGREHFINLHHLR--SQGVSVVCIADP------HLQSRQQALKLANAFDWP 59
             KY ++G G  GR  F     ++  SQ   +V   D       +  SR +AL  A     P
Sbjct:     4 KYALVGTG--GRAIFFYTAIVKDFSQTAQLVAFCDTNQTRLDYANSRLEALGHARI---P 58

Query:    60 LKVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKV 119
               +      ++     D V+V+T + TH   ++  +      +V+ EKP+      C+++
Sbjct:    59 TFLASDFDRMIAETQPDEVIVTTIDRTHNIYIVRALE--LGCNVITEKPMTIDAPRCRQI 116

Query:   120 VDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIR-----EHRFPFLVKV 174
              DA  +R    V+V   YRY P   K+ +++ SG IGQV  V        +H   +  + 
Sbjct:   117 FDAV-ERTGNRVRVTFNYRYAPHNTKIYELLSSGVIGQVNSVHFEWLLNTQHGADYYRR- 174

Query:   175 NDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASG 214
               W+R   N+GG LV K  H FDL+  ++ S P  V+A G
Sbjct:   175 --WHRDKRNSGGLLVHKSTHHFDLVNFWLQSRPETVVAMG 212

GO:0005575 "cellular_component" evidence=ND

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|P39353 yjhC [Escherichia coli K-12 (taxid:83333)]

 Score = 184 (69.8 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 96/393 (24%), Positives = 163/393 (41%)

Query:     7 VKYGIIGMGMMGRE--HFINLHHLRSQGVSVVCIADPHL-QSRQQALKLANAFDWPLKVF 63
             + YG++G+G  G E   F+N+H        + C+ DP   ++  + L+  N         
Sbjct:     2 INYGVVGVGYFGAELARFMNMH----DNAKITCVYDPENGENIARELQCIN--------M 49

Query:    64 PGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAA 123
                  L+ S L D V+V+TPN  H + ++    + K  HV  EKP+  +  DC  +V A 
Sbjct:    50 SSLDALVSSKLVDCVIVATPNYLHKEPVIKAAKNKK--HVFCEKPIALSYEDCVDMVKAC 107

Query:   124 RKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNEN 183
              K   +    G    +   V    +++K G IG++     + + +    +   W +  E 
Sbjct:   108 -KEAGVTFMAGHIMNFFNGVQYARKLIKEGVIGEILSCHTKRNGWENKQERLSWKKMKEQ 166

Query:   184 TGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFE 243
             +GG L     H  D ++  +G  P  V   G  ++ H    + G   D++   ++ +EF 
Sbjct:   167 SGGHLYHHI-HELDCVQHLLGEIPETVTMIGG-NLAHSGPGF-GNEDDML---FMTLEFP 220

Query:   244 NGSRGMLDLCMFAEGSK-NEQEIVVVGNTGKGEAFVPESIVRFATREAGREDV----QTL 298
             +G    L+      GS  N  E  V+ N  KG   +       + R  G+       +T 
Sbjct:   221 SGKLATLEW-----GSAFNWPEHYVIINGTKGSIKIDMQETAGSLRIGGQTKHFLVHETQ 275

Query:   299 KAEDDR------IEYEGL----HHGSS---YLEHLN-----FLSAIRAKGAKVPA--VDL 338
             + +DDR       E +G     H G     +L  L      FL  I   GAK     +DL
Sbjct:   276 EEDDDRRKGNMTSEMDGAIAYGHPGKKTPLWLASLIRKETLFLHNILC-GAKPEEDYIDL 334

Query:   339 QDG---LISVAIGVAAQLSIEKGRFIAIEEVME 368
              +G   + ++A   AA LS  + R + I E+++
Sbjct:   335 LNGEAAMSAIATADAATLSRSQDRKVKISEIIK 367

GO:0006974 "response to DNA damage stimulus" evidence=IEP

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	LOW CONFIDENCE prediction!
4th Layer	1.1.1.18	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	376
COG0673	342	COG0673, MviM, Predicted dehydrogenases and relate	1e-51
pfam01408	120	pfam01408, GFO_IDH_MocA, Oxidoreductase family, NA	1e-28
pfam02894	111	pfam02894, GFO_IDH_MocA_C, Oxidoreductase family,	2e-12
PRK11579	346	PRK11579, PRK11579, putative oxidoreductase; Provi	7e-05

>gnl|CDD|223745 COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]

 Score =  175 bits (444), Expect = 1e-51
 Identities = 92/361 (25%), Positives = 150/361 (41%), Gaps = 22/361 (6%)

Query: 6   TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPG 65
            ++ GIIG G +  +  +        G+ +V + D      ++A   A  F    K +  
Sbjct: 3   MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDR---DPERAEAFAEEFGIA-KAYTD 58

Query: 66  HQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARK 125
            +ELL     D V ++TPN  H ++ +  +   K  HVL EKPL  T+ + +++V+ ARK
Sbjct: 59  LEELLADPDIDAVYIATPNALHAELALAALEAGK--HVLCEKPLALTLEEAEELVELARK 116

Query: 126 RPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENT- 184
              + + VG   R+ P V  L +++ SG++G+V  V     R         W RF+    
Sbjct: 117 A-GVKLMVGFNRRFDPAVQALKELIDSGALGEVVSVQASFSRDRPNPPPPPWWRFDRADG 175

Query: 185 GGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFEN 244
           GG L++   H  DL+R  +GS          V V+ K          + D+A  I+ FEN
Sbjct: 176 GGALLDLGIHDLDLLRFLLGSPEP-------VSVSAKARNSPPGEAGVDDSASAILRFEN 228

Query: 245 GSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAEDDR 304
           G   +      A G  + + + V G   KG   V +                 ++  D  
Sbjct: 229 GVLAVSWASRTAAGGYDVR-LEVYG--TKGSLEVDD--GNPTGELLDGRIGLDVRGGDGE 283

Query: 305 IEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAIE 364
           +            E   F  AIR  G   P V  +D L ++ +  AA  S ++GR + + 
Sbjct: 284 LLLVPRRGNPYEGELEAFADAIR--GGGEPLVSGEDALKALRLAEAAYESAKEGRTVKLA 341

Query: 365 E 365
           E
Sbjct: 342 E 342

Length = 342

>gnl|CDD|201778 pfam01408, GFO_IDH_MocA, Oxidoreductase family, NAD-binding Rossmann fold

 Score =  107 bits (270), Expect = 1e-28
 Identities = 43/128 (33%), Positives = 67/128 (52%), Gaps = 9/128 (7%)

Query: 7   VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGH 66
           ++ GI+G G +GR H   L+  +  G  +V I DP      +A  +A +F  P   +   
Sbjct: 1   LRVGIVGAGKIGRRHLRALNESQD-GAELVGILDPDPA---RAEAVAESFGVP--AYSDL 54

Query: 67  QELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKR 126
           +ELL     D V V+TP   H+++ +  +   K  HVL EKPL TTV + K++V+ A K 
Sbjct: 55  EELLADPDIDAVSVATPPGLHFELALAALEAGK--HVLCEKPLATTVEEAKELVELAEKA 112

Query: 127 PDILVQVG 134
             + + VG
Sbjct: 113 -GVRLSVG 119

This family of enzymes utilise NADP or NAD. This family is called the GFO/IDH/MOCA family in swiss-prot. Length = 120

>gnl|CDD|217272 pfam02894, GFO_IDH_MocA_C, Oxidoreductase family, C-terminal alpha/beta domain

 Score = 62.9 bits (153), Expect = 2e-12
 Identities = 23/113 (20%), Positives = 44/113 (38%), Gaps = 4/113 (3%)

Query: 147 IQIVKSGSIGQVKMV--AIREHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVG 204
            +++++G +G+V+ V    R  R     +        +  GG L +   H  DL+R   G
Sbjct: 1   KELIENGVLGEVRSVSVDFRFDRAQRPSRWRWRRD--KKGGGALGDLGIHDLDLLRWLFG 58

Query: 205 SNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENGSRGMLDLCMFAE 257
             P  V A+G   +    E  +    ++   +  +   E+     LD+    E
Sbjct: 59  EPPSVVAAAGGRQLAPAGEYEDAAFANLEFGSGKVATLESSFSHSLDIRYVIE 111

This family of enzymes utilise NADP or NAD. This family is called the GFO/IDH/MOCA family in swiss-prot. Length = 111

>gnl|CDD|183212 PRK11579, PRK11579, putative oxidoreductase; Provisional

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 4/113 (3%)

Query: 57  DWP-LKVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVAD 115
           DWP + V    Q L +    D++V+ TPN TH+ +    +   K  HV+V+KP   T++ 
Sbjct: 46  DWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLAKAALEAGK--HVVVDKPFTVTLSQ 103

Query: 116 CKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRF 168
            ++ +DA  K    ++ V    R+      L  ++  G +G+V        RF
Sbjct: 104 ARE-LDALAKSAGRVLSVFHNRRWDSDFLTLKALLAEGVLGEVAYFESHFDRF 155

Length = 346

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	376
PRK11579	346	putative oxidoreductase; Provisional	100.0
COG0673	342	MviM Predicted dehydrogenases and related proteins	100.0
PRK10206	344	putative oxidoreductase; Provisional	100.0
KOG2741	351	consensus Dimeric dihydrodiol dehydrogenase [Carbo	100.0
KOG2742	367	consensus Predicted oxidoreductase [General functi	100.0
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	99.97
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	99.96
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	99.91
PRK08300	302	acetaldehyde dehydrogenase; Validated	99.84
PRK13303	265	L-aspartate dehydrogenase; Provisional	99.84
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	99.83
TIGR03855	229	NAD_NadX aspartate dehydrogenase. Members of this	99.82
PRK13304	265	L-aspartate dehydrogenase; Reviewed	99.82
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	99.79
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	99.77
PRK06270	341	homoserine dehydrogenase; Provisional	99.77
PRK06349	426	homoserine dehydrogenase; Provisional	99.76
PRK00048	257	dihydrodipicolinate reductase; Provisional	99.74
PRK05447	385	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	99.67
TIGR00036	266	dapB dihydrodipicolinate reductase.	99.65
PF08635	142	ox_reductase_C: Putative oxidoreductase C terminal	99.36
PF02894	115	GFO_IDH_MocA_C: Oxidoreductase family, C-terminal	99.3
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	99.24
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	99.14
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	99.09
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	99.04
PRK08618	325	ornithine cyclodeaminase; Validated	99.04
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	98.96
PRK08374	336	homoserine dehydrogenase; Provisional	98.92
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	98.9
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	98.87
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.8
COG4693	361	PchG Oxidoreductase (NAD-binding), involved in sid	98.78
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	98.68
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	98.68
COG4091	438	Predicted homoserine dehydrogenase [Amino acid tra	98.63
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	98.63
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	98.62
PRK06046	326	alanine dehydrogenase; Validated	98.62
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	98.61
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	98.55
COG0460	333	ThrA Homoserine dehydrogenase [Amino acid transpor	98.52
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	98.51
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	98.47
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	98.47
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	98.45
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	98.41
PRK06392	326	homoserine dehydrogenase; Provisional	98.38
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	98.36
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	98.35
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	98.35
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	98.33
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	98.33
PRK08291	330	ectoine utilization protein EutC; Validated	98.32
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	98.32
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	98.31
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	98.31
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	98.31
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	98.29
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.29
PLN02696	454	1-deoxy-D-xylulose-5-phosphate reductoisomerase	98.28
PRK07340	304	ornithine cyclodeaminase; Validated	98.24
PRK07680	273	late competence protein ComER; Validated	98.21
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	98.19
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	98.19
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	98.19
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	98.18
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	98.16
KOG0409	327	consensus Predicted dehydrogenase [General functio	98.15
COG3804	350	Uncharacterized conserved protein related to dihyd	98.15
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	98.14
PRK06813	346	homoserine dehydrogenase; Validated	98.13
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	98.11
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	98.1
PRK06141	314	ornithine cyclodeaminase; Validated	98.09
PLN02700	377	homoserine dehydrogenase family protein	98.09
KOG0455	364	consensus Homoserine dehydrogenase [Amino acid tra	98.06
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.05
COG4569	310	MhpF Acetaldehyde dehydrogenase (acetylating) [Sec	98.04
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	97.99
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	97.97
PLN02775	286	Probable dihydrodipicolinate reductase	97.96
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	97.96
PLN02256	304	arogenate dehydrogenase	97.95
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	97.95
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.94
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.94
COG2344	211	AT-rich DNA-binding protein [General function pred	97.93
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	97.93
COG0743	385	Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras	97.92
PLN02688	266	pyrroline-5-carboxylate reductase	97.9
PRK06823	315	ornithine cyclodeaminase; Validated	97.9
PRK15059	292	tartronate semialdehyde reductase; Provisional	97.9
TIGR00243	389	Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras	97.85
PRK07589	346	ornithine cyclodeaminase; Validated	97.84
PRK06407	301	ornithine cyclodeaminase; Provisional	97.83
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.83
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	97.82
PLN02358	338	glyceraldehyde-3-phosphate dehydrogenase	97.8
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	97.8
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	97.76
PRK05479	330	ketol-acid reductoisomerase; Provisional	97.73
PLN02858	1378	fructose-bisphosphate aldolase	97.72
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	97.71
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	97.71
TIGR01019	286	sucCoAalpha succinyl-CoA synthetase, alpha subunit	97.7
TIGR00871	482	zwf glucose-6-phosphate 1-dehydrogenase. This is a	97.69
PRK06199	379	ornithine cyclodeaminase; Validated	97.68
PRK08507	275	prephenate dehydrogenase; Validated	97.68
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	97.66
PTZ00187	317	succinyl-CoA synthetase alpha subunit; Provisional	97.66
PRK08655	437	prephenate dehydrogenase; Provisional	97.66
PRK07417	279	arogenate dehydrogenase; Reviewed	97.63
PRK05678	291	succinyl-CoA synthetase subunit alpha; Validated	97.63
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	97.62
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	97.62
PLN02712	667	arogenate dehydrogenase	97.61
PLN02712	667	arogenate dehydrogenase	97.61
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	97.61
PRK05722	495	glucose-6-phosphate 1-dehydrogenase; Validated	97.61
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.55
PLN00125	300	Succinyl-CoA ligase [GDP-forming] subunit alpha	97.54
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.54
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	97.53
PRK13403	335	ketol-acid reductoisomerase; Provisional	97.52
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	97.51
PRK12464	383	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	97.5
TIGR02130	275	dapB_plant dihydrodipicolinate reductase. This nar	97.5
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	97.49
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	97.48
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	97.47
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	97.46
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	97.46
PF02670	129	DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re	97.45
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	97.44
PLN02858	1378	fructose-bisphosphate aldolase	97.44
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	97.43
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	97.43
COG0057	335	GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt	97.4
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.38
PRK06545	359	prephenate dehydrogenase; Validated	97.38
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	97.37
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	97.36
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	97.35
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	97.34
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.32
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	97.3
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.28
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	97.27
PLN02353	473	probable UDP-glucose 6-dehydrogenase	97.26
PF00044	151	Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,	97.25
PLN03139	386	formate dehydrogenase; Provisional	97.25
COG0074	293	SucD Succinyl-CoA synthetase, alpha subunit [Energ	97.22
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	97.21
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	97.2
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	97.17
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	97.16
PTZ00431	260	pyrroline carboxylate reductase; Provisional	97.16
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	97.13
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	97.13
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	97.1
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.09
PRK07574	385	formate dehydrogenase; Provisional	97.08
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	97.07
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.06
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	97.04
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.04
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.0
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.0
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	96.98
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	96.96
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.95
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.95
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.94
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	96.93
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	96.92
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.91
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	96.85
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	96.83
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.82
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.82
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	96.81
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.81
PRK08818	370	prephenate dehydrogenase; Provisional	96.8
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	96.75
PLN02383	344	aspartate semialdehyde dehydrogenase	96.72
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	96.72
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	96.72
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	96.71
PRK13243	333	glyoxylate reductase; Reviewed	96.69
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	96.68
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	96.68
PRK04148	134	hypothetical protein; Provisional	96.66
PLN00203	519	glutamyl-tRNA reductase	96.65
PRK08605	332	D-lactate dehydrogenase; Validated	96.64
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	96.6
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	96.6
PRK12480	330	D-lactate dehydrogenase; Provisional	96.6
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	96.6
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	96.59
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.58
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.55
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.54
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	96.53
TIGR03025	445	EPS_sugtrans exopolysaccharide biosynthesis polypr	96.51
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	96.49
PRK08955	334	glyceraldehyde-3-phosphate dehydrogenase; Validate	96.46
PRK06436	303	glycerate dehydrogenase; Provisional	96.44
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	96.44
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	96.43
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	96.43
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	96.42
PTZ00082	321	L-lactate dehydrogenase; Provisional	96.4
KOG0172	445	consensus Lysine-ketoglutarate reductase/saccharop	96.39
PRK05225	487	ketol-acid reductoisomerase; Validated	96.38
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	96.35
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.35
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	96.35
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	96.33
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	96.33
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	96.27
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	96.24
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	96.2
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	96.2
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.19
PTZ00023	337	glyceraldehyde-3-phosphate dehydrogenase; Provisio	96.19
PLN02928	347	oxidoreductase family protein	96.18
PRK13397	250	3-deoxy-7-phosphoheptulonate synthase; Provisional	96.16
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	96.15
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	96.14
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.12
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	96.12
PRK07729	343	glyceraldehyde-3-phosphate dehydrogenase; Validate	96.11
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	96.11
PLN02306	386	hydroxypyruvate reductase	96.09
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.06
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	96.04
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	96.02
TIGR03023	451	WcaJ_sugtrans Undecaprenyl-phosphate glucose phosp	96.02
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	96.01
TIGR01361	260	DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate	95.98
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	95.98
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	95.97
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	95.92
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.92
PRK06988	312	putative formyltransferase; Provisional	95.92
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	95.9
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	95.89
TIGR03450	351	mycothiol_INO1 inositol 1-phosphate synthase, Acti	95.87
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	95.87
PLN03096	395	glyceraldehyde-3-phosphate dehydrogenase A; Provis	95.87
PRK06932	314	glycerate dehydrogenase; Provisional	95.86
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	95.86
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	95.8
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	95.79
PRK07403	337	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	95.79
PRK10124	463	putative UDP-glucose lipid carrier transferase; Pr	95.77
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	95.75
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	95.72
PRK15425	331	gapA glyceraldehyde-3-phosphate dehydrogenase A; P	95.7
PRK15076	431	alpha-galactosidase; Provisional	95.69
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	95.66
PRK13535	336	erythrose 4-phosphate dehydrogenase; Provisional	95.64
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	95.64
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	95.64
), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF02844">PF02844	100	GARS_N: Phosphoribosylglycinamide synthetase, N do	95.63
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	95.48
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	95.48
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	95.47
PRK12595	360	bifunctional 3-deoxy-7-phosphoheptulonate synthase	95.46
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	95.46
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	95.46
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.45
PTZ00075	476	Adenosylhomocysteinase; Provisional	95.44
PRK08223	287	hypothetical protein; Validated	95.43
TIGR03022	456	WbaP_sugtrans Undecaprenyl-phosphate galactose pho	95.41
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	95.41
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	95.4
PLN02602	350	lactate dehydrogenase	95.4
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	95.4
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	95.39
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	95.37
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	95.36
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	95.36
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.33
PRK13398	266	3-deoxy-7-phosphoheptulonate synthase; Provisional	95.32
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	95.32
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.31
PLN02586	360	probable cinnamyl alcohol dehydrogenase	95.29
TIGR01362	258	KDO8P_synth 3-deoxy-8-phosphooctulonate synthase.	95.28
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	95.28
PRK06487	317	glycerate dehydrogenase; Provisional	95.25
PRK12853	482	glucose-6-phosphate 1-dehydrogenase; Provisional	95.24
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	95.22
PRK00005	309	fmt methionyl-tRNA formyltransferase; Reviewed	95.16
PRK05198	264	2-dehydro-3-deoxyphosphooctonate aldolase; Provisi	95.14
COG0364	483	Zwf Glucose-6-phosphate 1-dehydrogenase [Carbohydr	95.14
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.13
PRK12548	289	shikimate 5-dehydrogenase; Provisional	95.11
PRK13396	352	3-deoxy-7-phosphoheptulonate synthase; Provisional	95.1
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	95.06
COG1832	140	Predicted CoA-binding protein [General function pr	95.06
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.01
PRK08328	231	hypothetical protein; Provisional	95.0
PTZ00117	319	malate dehydrogenase; Provisional	94.99
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	94.96
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.94
PLN02285	334	methionyl-tRNA formyltransferase	94.93
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	94.93
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	94.92
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	94.91
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	94.87
PTZ00434	361	cytosolic glyceraldehyde 3-phosphate dehydrogenase	94.86
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	94.86
PLN02237	442	glyceraldehyde-3-phosphate dehydrogenase B	94.85
PLN02539	491	glucose-6-phosphate 1-dehydrogenase	94.83
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	94.83
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	94.82
PRK09414	445	glutamate dehydrogenase; Provisional	94.81
COG0223	307	Fmt Methionyl-tRNA formyltransferase [Translation,	94.81
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	94.78
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	94.78
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	94.78
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	94.78
PLN02494	477	adenosylhomocysteinase	94.77
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	94.76
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	94.75
PRK06223	307	malate dehydrogenase; Reviewed	94.75
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	94.67
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	94.65
PLN02827	378	Alcohol dehydrogenase-like	94.65
PRK14982	340	acyl-ACP reductase; Provisional	94.63
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	94.61
PRK03659	601	glutathione-regulated potassium-efflux system prot	94.58
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	94.56
PRK12457	281	2-dehydro-3-deoxyphosphooctonate aldolase; Provisi	94.55
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	94.53
PRK08673	335	3-deoxy-7-phosphoheptulonate synthase; Reviewed	94.52
COG1810	224	Uncharacterized protein conserved in archaea [Func	94.51
PLN03033	290	2-dehydro-3-deoxyphosphooctonate aldolase; Provisi	94.5
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	94.5
PRK05562	223	precorrin-2 dehydrogenase; Provisional	94.48
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	94.45
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	94.43
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	94.41
PRK09496	453	trkA potassium transporter peripheral membrane com	94.41
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.39
PF13727	175	CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.	94.38
PLN02178	375	cinnamyl-alcohol dehydrogenase	94.35
TIGR00460	313	fmt methionyl-tRNA formyltransferase. The top-scor	94.24
TIGR00112	245	proC pyrroline-5-carboxylate reductase. This enzym	94.24
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	94.23
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	94.21
PRK10669	558	putative cation:proton antiport protein; Provision	94.21
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	94.19
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	94.18
PRK03562	621	glutathione-regulated potassium-efflux system prot	94.16
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	94.12
COG2910	211	Putative NADH-flavin reductase [General function p	94.04
PLN02514	357	cinnamyl-alcohol dehydrogenase	94.03
PRK15116	268	sulfur acceptor protein CsdL; Provisional	94.01
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	93.96
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	93.89
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	93.88
PTZ00353	342	glycosomal glyceraldehyde-3-phosphate dehydrogenas	93.87
PRK06719	157	precorrin-2 dehydrogenase; Validated	93.84
PRK09496	453	trkA potassium transporter peripheral membrane com	93.82
TIGR03013	442	EpsB_2 sugar transferase, PEP-CTERM system associa	93.82
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	93.79
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	93.71
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.7
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	93.65
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	93.61
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.57
COG3268	382	Uncharacterized conserved protein [Function unknow	93.55
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	93.55
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	93.52
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.44
PRK14852	989	hypothetical protein; Provisional	93.37
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	93.35
PRK12854	484	glucose-6-phosphate 1-dehydrogenase; Provisional	93.26
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	93.26
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.19
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.19
PRK06395	435	phosphoribosylamine--glycine ligase; Provisional	93.18
TIGR03569	329	NeuB_NnaB N-acetylneuraminate synthase. This famil	93.05
KOG1255	329	consensus Succinyl-CoA synthetase, alpha subunit [	93.01
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.0
PRK14851	679	hypothetical protein; Provisional	93.0
COG4566	202	TtrR Response regulator [Signal transduction mecha	92.98
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	92.97
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	92.95
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	92.94
TIGR03586	327	PseI pseudaminic acid synthase.	92.91
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.81
PRK06153	393	hypothetical protein; Provisional	92.81
COG0151	428	PurD Phosphoribosylamine-glycine ligase [Nucleotid	92.81
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.73
PTZ00309	542	glucose-6-phosphate 1-dehydrogenase; Provisional	92.65
PRK06091	555	membrane protein FdrA; Validated	92.62
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	92.59
KOG2666	481	consensus UDP-glucose/GDP-mannose dehydrogenase [C	92.55
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	92.55
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	92.52
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	92.49
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	92.47
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	92.42
PLN02740	381	Alcohol dehydrogenase-like	92.4
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	92.4
PRK14031	444	glutamate dehydrogenase; Provisional	92.3
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	92.22
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	92.13
TIGR03693	637	ocin_ThiF_like putative thiazole-containing bacter	92.12
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	92.12
PRK14967	223	putative methyltransferase; Provisional	92.09
PRK05086	312	malate dehydrogenase; Provisional	92.06
PLN02477	410	glutamate dehydrogenase	92.02
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	92.01
PRK15204	476	undecaprenyl-phosphate galactose phosphotransferas	91.97
PRK05442	326	malate dehydrogenase; Provisional	91.95
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	91.94
PLN02333	604	glucose-6-phosphate 1-dehydrogenase	91.87
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	91.86
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	91.84
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	91.81
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	91.73
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	91.69
PRK06444	197	prephenate dehydrogenase; Provisional	91.66
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	91.63
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	91.58
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	91.54
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	91.51
PRK07411	390	hypothetical protein; Validated	91.48
PTZ00325	321	malate dehydrogenase; Provisional	91.41
PRK00885	420	phosphoribosylamine--glycine ligase; Provisional	91.37
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	91.35
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.35
PLN02640	573	glucose-6-phosphate 1-dehydrogenase	91.34
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	91.31
PF10100	429	DUF2338: Uncharacterized protein conserved in bact	91.25
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	91.2
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	91.16
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	91.05
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	91.03
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	90.98
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	90.9
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	90.88
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	90.87
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	90.87
TIGR01534	327	GAPDH-I glyceraldehyde-3-phosphate dehydrogenase,	90.82
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	90.72
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	90.7
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	90.69
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	90.69
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	90.54
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	90.47
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	90.47
COG0773	459	MurC UDP-N-acetylmuramate-alanine ligase [Cell env	90.4
PRK13789	426	phosphoribosylamine--glycine ligase; Provisional	90.38
PRK07877	722	hypothetical protein; Provisional	90.24
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.11
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	90.02
TIGR00877	423	purD phosphoribosylamine--glycine ligase. This enz	90.02
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	89.95
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	89.95
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	89.92
PRK04284	332	ornithine carbamoyltransferase; Provisional	89.92
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	89.81
PLN02522	608	ATP citrate (pro-S)-lyase	89.79
TIGR00639	190	PurN phosphoribosylglycinamide formyltransferase,	89.7
PRK05647	200	purN phosphoribosylglycinamide formyltransferase;	89.67
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	89.63
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	89.62
KOG4354	340	consensus N-acetyl-gamma-glutamyl-phosphate reduct	89.5
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	89.49
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	89.48
PLN00106	323	malate dehydrogenase	89.43
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	89.43
TIGR01142	380	purT phosphoribosylglycinamide formyltransferase 2	89.31
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	89.23
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	89.18
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	89.12
PRK00994	277	F420-dependent methylenetetrahydromethanopterin de	89.07
TIGR01081	448	mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl	89.02
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	88.93
PRK10637	457	cysG siroheme synthase; Provisional	88.87
COG5495	289	Uncharacterized conserved protein [Function unknow	88.85
PRK11730	715	fadB multifunctional fatty acid oxidation complex	88.83
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	88.78
TIGR00658	304	orni_carb_tr ornithine carbamoyltransferase. Most	88.76
PF00479	183	G6PD_N: Glucose-6-phosphate dehydrogenase, NAD bin	88.67
PRK07236	386	hypothetical protein; Provisional	88.53
PRK09288	395	purT phosphoribosylglycinamide formyltransferase 2	88.52
PLN02427	386	UDP-apiose/xylose synthase	88.48
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	88.48
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	88.29
PRK12815	1068	carB carbamoyl phosphate synthase large subunit; R	88.28
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	88.25
PRK02102	331	ornithine carbamoyltransferase; Validated	88.03
PLN02948	577	phosphoribosylaminoimidazole carboxylase	88.02

>PRK11579 putative oxidoreductase; Provisional

Probab=100.00  E-value=5.3e-56  Score=414.62  Aligned_cols=331  Identities=18%  Similarity=0.232  Sum_probs=256.5

Q ss_pred             CceeEEEEeCChhhH-HHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143            5 DTVKYGIIGMGMMGR-EHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~-~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      +++||||||+|.+|+ .|++.+...  +++++++|||+++++   +.   ++++. ++.|+|+++||+++++|+|+||||
T Consensus         3 ~~irvgiiG~G~i~~~~~~~~~~~~--~~~~l~av~d~~~~~---~~---~~~~~-~~~~~~~~ell~~~~vD~V~I~tp   73 (346)
T PRK11579          3 DKIRVGLIGYGYASKTFHAPLIAGT--PGLELAAVSSSDATK---VK---ADWPT-VTVVSEPQHLFNDPNIDLIVIPTP   73 (346)
T ss_pred             CcceEEEECCCHHHHHHHHHHHhhC--CCCEEEEEECCCHHH---HH---hhCCC-CceeCCHHHHhcCCCCCEEEEcCC
Confidence            369999999999998 588988887  899999999998763   32   34543 268999999999999999999999


Q ss_pred             CCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEEEE
Q 017143           84 NMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAI  163 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~~~  163 (376)
                      +..|++++++||+  +|||||||||++.|.+|+++|.++| +++|+.+++++++||+|.++++|++|++|.||+|+.++.
T Consensus        74 ~~~H~~~~~~al~--aGkhVl~EKPla~t~~ea~~l~~~a-~~~g~~l~v~~~~R~~p~~~~~k~~i~~g~iG~i~~~~~  150 (346)
T PRK11579         74 NDTHFPLAKAALE--AGKHVVVDKPFTVTLSQARELDALA-KSAGRVLSVFHNRRWDSDFLTLKALLAEGVLGEVAYFES  150 (346)
T ss_pred             cHHHHHHHHHHHH--CCCeEEEeCCCCCCHHHHHHHHHHH-HHhCCEEEEEeeccCCHHHHHHHHHHhcCCCCCeEEEEE
Confidence            9999999999999  9999999999999999999999999 556999999999999999999999999999999999988


Q ss_pred             eeccCCcccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCccccCCCCCcccccEEEEEEec
Q 017143          164 REHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFE  243 (376)
Q Consensus       164 ~~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~  243 (376)
                      ++.++.. ..+..|+.+...+||+++|+|+|.+|+++||+| .|.+|++.......         ..+++|.+.++++|+
T Consensus       151 ~~~~~~~-~~~~~w~~~~~~ggG~l~d~g~H~id~~~~l~G-~~~~v~a~~~~~~~---------~~~~~D~~~~~l~f~  219 (346)
T PRK11579        151 HFDRFRP-QVRQRWREQGGPGSGIWYDLAPHLLDQAIQLFG-LPVSITVDLAQLRP---------GAQSTDYFHAILSYP  219 (346)
T ss_pred             EecccCC-CCccccccCCCCCCcchhhhhhhHHHHHHHHhC-CCeEEEEEeeeecC---------CCCCCceEEEEEEEC
Confidence            6543321 123468766678899999999999999999999 58999987654211         125789999999999


Q ss_pred             CCcEEEEEEEEeecCCCCceEEEEEecCCeeeeecccce-eee--ecc-------cCCccceEEeeccCc-cccccCCCC
Q 017143          244 NGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESI-VRF--ATR-------EAGREDVQTLKAEDD-RIEYEGLHH  312 (376)
Q Consensus       244 ~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~~-~~~--~~~-------~~~~~~~~~~~~~~~-~~~~~~~~~  312 (376)
                      ||.. ++..++.....  ..+++|+|++|++.+...... ..+  ...       .....+......... .........
T Consensus       220 ~g~~-~~~~s~~~~~~--~~~~~i~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (346)
T PRK11579        220 QRRV-VLHGTMLAAAE--SARYIVHGSRGSYVKYGLDPQEERLKNGERLPQEDWGYDMRDGVLTLVEGEERVEETLLTLP  296 (346)
T ss_pred             CeEE-EEEEEeeecCC--CCEEEEEecCceEEEcCCCccHHHHhCCCCCCCCCCCCCCccCeEEEecCCccceeeecCCC
Confidence            9855 77777765432  348999999999875321111 000  000       000001111100000 000011112


Q ss_pred             CCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCEEEe
Q 017143          313 GSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAI  363 (376)
Q Consensus       313 ~~~~~~l~~f~~~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~g~~v~~  363 (376)
                      +.+..++++|+++|+  ++.+++++.+++++++++++|+++|+++|++|.|
T Consensus       297 ~~~~~~~~~f~~~i~--~~~~~~~~~e~a~~~l~i~~a~~~Sa~~g~~v~l  345 (346)
T PRK11579        297 GNYPAYYAAIRDALN--GDGENPVPASQAIQVMELIELGIESAKHRATLCL  345 (346)
T ss_pred             CCHHHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHHHHHHhcCCEEec
Confidence            445577899999998  7788899999999999999999999999999986

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=100.00  E-value=8.6e-55  Score=407.55  Aligned_cols=337  Identities=27%  Similarity=0.370  Sum_probs=270.5

Q ss_pred             CCceeEEEEeCChhh-HHHHHHhhhhcCCC-cEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEe
Q 017143            4 NDTVKYGIIGMGMMG-REHFINLHHLRSQG-VSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g-~~~~~~~~~~~~~~-~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~   81 (376)
                      |+++||||||+|.++ +.|++.+.+.  ++ ++++++||++++   ++++++++|+++ ..|+|+++||+++++|+|+|+
T Consensus         1 ~~~irvgiiG~G~~~~~~~~~~~~~~--~~~~~~vav~d~~~~---~a~~~a~~~~~~-~~~~~~~~ll~~~~iD~V~Ia   74 (342)
T COG0673           1 MKMIRVGIIGAGGIAGKAHLPALAAL--GGGLELVAVVDRDPE---RAEAFAEEFGIA-KAYTDLEELLADPDIDAVYIA   74 (342)
T ss_pred             CCeeEEEEEcccHHHHHHhHHHHHhC--CCceEEEEEecCCHH---HHHHHHHHcCCC-cccCCHHHHhcCCCCCEEEEc
Confidence            458999999999766 4699999998  56 799999999998   788999999987 899999999999999999999


Q ss_pred             CCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEE
Q 017143           82 TPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMV  161 (376)
Q Consensus        82 t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~  161 (376)
                      ||+..|++++++||+  +|||||||||++.|++|+++|+++|++ +|++++|++++||.|.++++|++|++|.||+|..+
T Consensus        75 tp~~~H~e~~~~AL~--aGkhVl~EKPla~t~~ea~~l~~~a~~-~~~~l~v~~~~Rf~p~~~~~k~li~~g~lG~v~~~  151 (342)
T COG0673          75 TPNALHAELALAALE--AGKHVLCEKPLALTLEEAEELVELARK-AGVKLMVGFNRRFDPAVQALKELIDSGALGEVVSV  151 (342)
T ss_pred             CCChhhHHHHHHHHh--cCCEEEEcCCCCCCHHHHHHHHHHHHH-cCCceeeehhhhcCHHHHHHHHHHhcCCcCceEEE
Confidence            999999999999999  999999999999999999999999954 59999999999999999999999999999999999


Q ss_pred             EEeeccCCcc-cccCccccccccCCcccccccccHHHHHHHHhCC-CCeEEEEecccccccCccccCCCCCcccccEEEE
Q 017143          162 AIREHRFPFL-VKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGS-NPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVI  239 (376)
Q Consensus       162 ~~~~~~~~~~-~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~-~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~  239 (376)
                      +..+...... ..+..|+.....+||+++|+|+|.+|+++||+|. ++.+|++......        ....+.+|.+.++
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~gG~l~d~giH~lD~~~~l~G~~~~~~v~a~~~~~~--------~~~~~~~d~~~~~  223 (342)
T COG0673         152 QASFSRDRPNPPPPPWWRFDRADGGGALLDLGIHDLDLLRFLLGSPEPVSVSAKARNSP--------PGEAGVDDSASAI  223 (342)
T ss_pred             EEEeeccccccCCccceecccccCCCchhhhHHHHHHHHHHHcCCcchhheeeecccCC--------CCcccccceEEEE
Confidence            9865544332 3345665566678899999999999999999997 6888888766532        1123688999999


Q ss_pred             EEecCCcEEEEEEEEeecCCCCceEEEEEecCCeeeeecccceeeeecccCCccceEEeeccCccccccCCCCCCCHHHH
Q 017143          240 VEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAEDDRIEYEGLHHGSSYLEH  319 (376)
Q Consensus       240 l~~~~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  319 (376)
                      ++|+||.......++........ .++|+|++|++.++..........   . ......................+..++
T Consensus       224 l~~~~g~~~~~~~~~~~~~~~~~-~~~i~G~~G~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (342)
T COG0673         224 LRFENGVLAVSWASRTAAGGYDV-RLEVYGTKGSLEVDDGNPTGELLD---G-RIGLDVRGGDGELLLVPRRGNPYEGEL  298 (342)
T ss_pred             EEecCCceEEEEEEeeccCCcCc-eEEEEeccceEEecccccccccee---e-eccccccCCCccccCCCcccchhHHHH
Confidence            99999888887766554444433 389999999999875443322110   0 000000000000000011111567899


Q ss_pred             HHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCEEEeh
Q 017143          320 LNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAIE  364 (376)
Q Consensus       320 ~~f~~~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~g~~v~~~  364 (376)
                      ++|+++++  +..++..+.++++.++++++++++|..++++|.++
T Consensus       299 ~~f~~~i~--~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~v~~~  341 (342)
T COG0673         299 EAFADAIR--GGGEPLVSGEDALKALRLAEAAYESAKEGRTVKLA  341 (342)
T ss_pred             HHHHHHHh--cCCCCCCCHHHHHHHHHHHHHHHHhhccCceeeCC
Confidence            99999998  66666899999999999999999999999999875

>PRK10206 putative oxidoreductase; Provisional

Probab=100.00  E-value=3.1e-51  Score=380.60  Aligned_cols=329  Identities=15%  Similarity=0.136  Sum_probs=248.4

Q ss_pred             ceeEEEEeCChhhH-HHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIGMGMMGR-EHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG~G~~g~-~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      ++||||||+|.++. .|++.+.... ++++|++|||++++   ++ +++++|+.. +.|+|+++||+++++|+|+|+||+
T Consensus         1 ~irvgiiG~G~~~~~~h~~~~~~~~-~~~~l~av~d~~~~---~~-~~~~~~~~~-~~~~~~~ell~~~~iD~V~I~tp~   74 (344)
T PRK10206          1 VINCAFIGFGKSTTRYHLPYVLNRK-DSWHVAHIFRRHAK---PE-EQAPIYSHI-HFTSDLDEVLNDPDVKLVVVCTHA   74 (344)
T ss_pred             CeEEEEECCCHHHhheehhhHhcCC-CCEEEEEEEcCChh---HH-HHHHhcCCC-cccCCHHHHhcCCCCCEEEEeCCc
Confidence            48999999999774 6888775431 68999999999875   23 566778743 689999999999999999999999


Q ss_pred             CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEEEEe
Q 017143           85 MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIR  164 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~~~~  164 (376)
                      ..|++++++||+  +|||||||||++.+.+|+++|++++ +++|+.+++++++||+|.++++|++|++|.||+|+.++.+
T Consensus        75 ~~H~~~~~~al~--aGkhVl~EKPla~~~~ea~~l~~~a-~~~~~~l~v~~~~R~~p~~~~~k~li~~g~iG~i~~i~~~  151 (344)
T PRK10206         75 DSHFEYAKRALE--AGKNVLVEKPFTPTLAEAKELFALA-KSKGLTVTPYQNRRFDSCFLTAKKAIESGKLGEIVEVESH  151 (344)
T ss_pred             hHHHHHHHHHHH--cCCcEEEecCCcCCHHHHHHHHHHH-HHhCCEEEEEEeeeECHHHHHHHHHHHcCCCCCeEEEEEE
Confidence            999999999999  9999999999999999999999999 5569999999999999999999999999999999999886


Q ss_pred             eccCCcccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCccccCCCCCcccccEEEEEEecC
Q 017143          165 EHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFEN  244 (376)
Q Consensus       165 ~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~  244 (376)
                      +..+.    +..+......+||+++|+|+|.+|+++||+| +|.+|++.......         ..+++|++.++++| +
T Consensus       152 ~~~~~----~~~~~~~~~~~gG~l~d~g~H~ld~~~~l~G-~~~~v~a~~~~~~~---------~~~~~d~~~~~l~f-~  216 (344)
T PRK10206        152 FDYYR----PVAETKPGLPQDGAFYGLGVHTMDQIISLFG-RPDHVAYDIRSLRN---------KANPDDTFEAQLFY-G  216 (344)
T ss_pred             ecccC----CccccccCCCCCceeechhHHHHHHHHHHcC-CCeEEEEEeecccC---------CCCCCceEEEEEEe-C
Confidence            43321    1111122235789999999999999999999 68899887543211         11578999999999 5


Q ss_pred             CcEEEEEEEEeecCCCCceEEEEEecCCeeeeecccce-eeeec--ccC-------CccceEEeeccCcc-c-cccCCCC
Q 017143          245 GSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESI-VRFAT--REA-------GREDVQTLKAEDDR-I-EYEGLHH  312 (376)
Q Consensus       245 G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~~-~~~~~--~~~-------~~~~~~~~~~~~~~-~-~~~~~~~  312 (376)
                      |.++++..++.....  ..+++|+|++|++..+..+.. +.+..  ...       ...+......+... . .......
T Consensus       217 ~~~~~i~~s~~~~~~--~~~~~i~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (344)
T PRK10206        217 DLKAIVKTSHLVKID--YPKFIVHGKKGSFIKYGIDQQETSLKANIMPGEPGFAADDSVGVLEYVNDEGVTVREEMKPEM  294 (344)
T ss_pred             CEEEEEEEeeeecCC--CCeEEEEeccceEEEecCCccHHHHhCCCCCCCCCCCcCCCCceEEEeccCCcceeeeeCCCC
Confidence            688999988865432  347999999999976422111 11000  000       00111111111110 0 0011123


Q ss_pred             CCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCEEEe
Q 017143          313 GSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAI  363 (376)
Q Consensus       313 ~~~~~~l~~f~~~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~g~~v~~  363 (376)
                      +.+..++++|+++|+  ++.+|..+.++++++++|++|+++|+ +-.+|++
T Consensus       295 ~~~~~~~~~f~~ai~--~g~~p~v~~e~al~~l~iiea~~~sa-~~~~~~~  342 (344)
T PRK10206        295 GDYGRVYDALYQTLT--HGAPNYVKESEVLTNLEILERGFEQA-SPATVTL  342 (344)
T ss_pred             CCHHHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHHHhcC-Cccceec
Confidence            467788999999998  78888899999999999999999973 3445544

>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=3.1e-47  Score=335.25  Aligned_cols=340  Identities=26%  Similarity=0.373  Sum_probs=270.8

Q ss_pred             CCCCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-CCccCCHHHHhhCCCCCEEE
Q 017143            1 MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LKVFPGHQELLDSGLCDVVV   79 (376)
Q Consensus         1 m~~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~   79 (376)
                      |+..+.+|+||+|+|.++..++.++...+..+.+|+||+|++.+   +|+++|+++++| ++.|.+||+|++++++|+|+
T Consensus         1 ~~~s~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~---~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVy   77 (351)
T KOG2741|consen    1 VSDSATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLE---RAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVY   77 (351)
T ss_pred             CCCCceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHH---HHHHHHHhcCCCCCccccCHHHHhcCCCcCEEE
Confidence            66778899999999999999999999984459999999999776   899999999994 59999999999999999999


Q ss_pred             EeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceE
Q 017143           80 VSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVK  159 (376)
Q Consensus        80 i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~  159 (376)
                      |++|+..|++.++.+|.  +|||||||||+|.|++|+++|+++|++ .|+.+|.|...||.|.+.++|+++.+|.+|+|.
T Consensus        78 i~~~~~qH~evv~l~l~--~~K~VL~EKPla~n~~e~~~iveaA~~-rgv~~meg~~~R~~P~~~~lke~l~~~~~Gdvk  154 (351)
T KOG2741|consen   78 ISTPNPQHYEVVMLALN--KGKHVLCEKPLAMNVAEAEEIVEAAEA-RGVFFMEGLWWRFFPRYAKLKELLSSGVLGDVK  154 (351)
T ss_pred             eCCCCccHHHHHHHHHH--cCCcEEecccccCCHHHHHHHHHHHHH-cCcEEEeeeeeecCcHHHHHHHHHhccccccce
Confidence            99999999999999999  999999999999999999999999954 589999999999999999999999999999999


Q ss_pred             EEEEeeccCCcccc--cCccc-cccccCCcccccccccHHHHHHHH--hCCCCeEEEEecccccccCccccCCCCCcccc
Q 017143          160 MVAIREHRFPFLVK--VNDWN-RFNENTGGTLVEKCCHFFDLMRLF--VGSNPMRVMASGAVDVNHKDEMYNGKVPDIID  234 (376)
Q Consensus       160 ~~~~~~~~~~~~~~--~~~w~-~~~~~~gG~l~d~g~H~ld~~~~l--~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d  234 (376)
                      .+.+. ++++...+  ++.-+ +....++|+++|+|+|.+.+.+|.  |+ .+.++.+...+..+         ..+++|
T Consensus       155 ~v~~~-~~f~~~~~~l~~~~r~~~~~~g~G~l~D~g~Y~i~~~~~~~~f~-~~p~~~~~~g~v~n---------~~~v~~  223 (351)
T KOG2741|consen  155 SVEVE-FGFPFPEDELPHKSRLRTGLLGGGALGDLGIYPIQAALWVNNFQ-EPPEVIAVDGRVLN---------SEGVDD  223 (351)
T ss_pred             EEEEe-cCCCcchhhcccccchheecccCceehhhHHHHHHHHHHHHHhc-CCcceeecCccccc---------CCCccc
Confidence            99994 44443311  11111 223467899999999999999999  77 45555555433211         237899


Q ss_pred             cEEEEEEecCCcEEEEEEEEeecCCCCceEEEEEecCCeeeeeccc-ceeeeecccCCccceEEeeccCccccccCCCCC
Q 017143          235 NAYVIVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPE-SIVRFATREAGREDVQTLKAEDDRIEYEGLHHG  313 (376)
Q Consensus       235 ~~~~~l~~~~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (376)
                      ++.++|.|.+|+.+.+.+|+..   .......|.||+|.+++.+-. +...+.....+..+...+ ..++..+..-.+..
T Consensus       224 s~~~~l~f~~~~~~~~~cSf~~---~l~n~~~i~GtkG~~~l~d~~~p~~~~~~~~~~~~~~~~~-~p~~~~~~~~~n~~  299 (351)
T KOG2741|consen  224 SVGAILDFTGGRTALILCSFLE---KLTNEAVITGTKGSLKLLDYWIPTKETLSRFGGREKEFPL-LPGEDVDTHYDNEA  299 (351)
T ss_pred             ccceEEEeCCCceEEEEEehhh---hCCCceEEEecccceeeeeccccceeeeeeecCCCccccC-CCCCCcccccccch
Confidence            9999999999999999877632   233468889999999986211 111111222222222221 22333333334667


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCEE
Q 017143          314 SSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFI  361 (376)
Q Consensus       314 ~~~~~l~~f~~~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~g~~v  361 (376)
                      ++..|.+.+..+|+.++.+.+..+..+.+.++.+.++++++...+-++
T Consensus       300 ~m~~E~~~v~~~I~~~~~ea~~~~~~~S~~~~~i~D~i~~qi~v~~~~  347 (351)
T KOG2741|consen  300 GMVYEAERVRECIKKGGKEADDIPHAESLKLMLIVDAIRRQIGVVYKA  347 (351)
T ss_pred             hhHHHHHHHHHHHHhcCcCCCCCCchHHHHHHHHHHHHHHHhccccch
Confidence            888899999999998777778889999999999999999998765443

>KOG2742 consensus Predicted oxidoreductase [General function prediction only]

Probab=100.00  E-value=3.3e-35  Score=256.59  Aligned_cols=346  Identities=21%  Similarity=0.222  Sum_probs=258.5

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      +. |||+|+|..++-.+|.++..   .|++.|++.|...   .+++.++.-+++ ..|+.+++.|.++++|.|.|..||.
T Consensus         3 Pg-v~v~GTg~~arv~iP~l~e~---~f~v~A~w~Rt~~---ea~a~aa~~~v~-~~t~~~deiLl~~~vdlv~i~lpp~   74 (367)
T KOG2742|consen    3 PG-VGVFGTGIFARVLIPLLKEE---GFEVKAIWGRTKT---EAKAKAAEMNVR-KYTSRLDEILLDQDVDLVCISLPPP   74 (367)
T ss_pred             Cc-eeEeccChhHhhhhhhhhhc---cchHhhhhchhhh---HHHHhhhccchh-hccccchhhhccCCcceeEeccCCc
Confidence            45 99999999999889998887   4999999999443   455566666665 6677999999999999999999999


Q ss_pred             ccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEEEEee
Q 017143           86 THYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIRE  165 (376)
Q Consensus        86 ~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~~~~~  165 (376)
                      .|++++.+|+.  .||||.||||. .++.+++++.+++ +...+...++++.||.|.+..+|+.|+.+.+|++..+..+.
T Consensus        75 ~~~eI~~kal~--~Gk~Vvcek~a-~~~d~~k~~~~~~-~s~~L~~lv~~~lrflp~f~~~k~~ie~i~~g~vv~~~~~v  150 (367)
T KOG2742|consen   75 LHAEIVVKALG--IGKHVVCEKPA-TNLDAAKMVVALA-YSPKLMSLVGHVLRFLPAFVTAKELIEEIYVGEVVRCDVRV  150 (367)
T ss_pred             cceeeeecccc--CCceEEeccCC-cchhhhhhHHHHh-hchhHHHHhhhhhhhhHHHHHHHHHHHhccCCCeeeeeeee
Confidence            99999999999  99999999999 8999999999999 77899999999999999999999999999999999999988


Q ss_pred             ccCCcccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEE-ecccccccCccccCCCCCcccccEEEEEEecC
Q 017143          166 HRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMA-SGAVDVNHKDEMYNGKVPDIIDNAYVIVEFEN  244 (376)
Q Consensus       166 ~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a-~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~  244 (376)
                      .++..+....+|..+...+||.++|+|+|.+|++..||| .|.++.+ .-........+.-+-.....+|.+..+....+
T Consensus       151 ~~~~l~~k~~~W~~~p~~ggG~l~d~Gsh~Idl~~~L~G-~~~~~~~gl~~~~~~~~~ei~g~~~I~~~~~~~~~~l~~~  229 (367)
T KOG2742|consen  151 DRGRLFRKSYNWKCDPLMGGGFLYDMGSHLIDLLTSLLG-TPASVVHGLLSQRTRQPLEIEGIRRITLHDFCLFQMLPIG  229 (367)
T ss_pred             ecceecccCCccccccccCCceeecchHHHHHHHHHHhC-CchhhhhhhhhhhccCchhhcccceeeecchhhhceeecc
Confidence            888777777899998889999999999999999999999 4555433 32222222222222334567788888888889


Q ss_pred             CcEEEEEEEEeecCCCCceEEEEEecCCeeeeecccce--eeeecccCCccceEEeeccCccccccCCCCCCCHHHHHHH
Q 017143          245 GSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESI--VRFATREAGREDVQTLKAEDDRIEYEGLHHGSSYLEHLNF  322 (376)
Q Consensus       245 G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f  322 (376)
                      |.+++...+.. ++  . .++.|+|++|++..+..++.  .......+...   .... +....+....-.+.-.+.+.|
T Consensus       230 ~i~~t~~l~~~-~~--~-~~~~I~Gs~Gt~~~~g~DpqE~~l~~~m~~~~~---~~g~-d~~~~Y~~g~~~~V~a~~~~f  301 (367)
T KOG2742|consen  230 GILSTVALSCG-PG--F-MEVRIVGSKGTLVVRGGDPQEEQLHGDMLPVSE---GGGT-DRPILYLKGTLWMVPAERDAF  301 (367)
T ss_pred             ceEEeeecccC-Cc--c-eEEEEEecCceEEEecCCcchhhhhccccccCC---CCCc-cceeEeecCccccccHHHHhh
Confidence            88888665433 33  3 58999999999987654421  11100000000   0000 000111011111222455666


Q ss_pred             HHHHHhcC----CCCCCCCHHHHHHHHHHHHHHHHHHHcCCEEEehhhhhhhcc
Q 017143          323 LSAIRAKG----AKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAIEEVMEELNC  372 (376)
Q Consensus       323 ~~~i~~~~----~~~~~~~~~d~~~~~~ii~a~~~S~~~g~~v~~~~~~~~~~~  372 (376)
                      ....-...    ...+..+++|++...-+.+++..|+++|+++.+..+++.-++
T Consensus       302 ~~~~s~ks~~~tp~~~~~~F~d~l~~a~V~~aie~s~k~gq~~~Vek~~e~~~~  355 (367)
T KOG2742|consen  302 HNPESTKSWVQTPVSMYATFEDGLYVACVVAAIESSAKNGQVVAVEKITEAPYK  355 (367)
T ss_pred             cCCCCccccccccccchhhhhhhhHHHHHHHHHhcccCCCceEEeeeccccccc
Confidence            66543100    112347899999999999999999999999999888876554

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=99.97  E-value=8e-29  Score=226.90  Aligned_cols=223  Identities=15%  Similarity=0.136  Sum_probs=169.8

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCC-CcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEe--
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQ-GVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVS--   81 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~-~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~--   81 (376)
                      +++||||||+ .+|+.|++++.+.  + +++|+||||++++   ++++++++||++  .|+|+++|+++.++|+|+|+  
T Consensus         2 ~~~rVgViG~-~~G~~h~~al~~~--~~~~eLvaV~d~~~e---rA~~~A~~~gi~--~y~~~eell~d~Di~~V~ipt~   73 (343)
T TIGR01761         2 DVQSVVVCGT-RFGQFYLAAFAAA--PERFELAGILAQGSE---RSRALAHRLGVP--LYCEVEELPDDIDIACVVVRSA   73 (343)
T ss_pred             CCcEEEEEeH-HHHHHHHHHHHhC--CCCcEEEEEEcCCHH---HHHHHHHHhCCC--ccCCHHHHhcCCCEEEEEeCCC
Confidence            4799999999 5799999999987  6 8999999999998   788999999987  89999999988777777773  


Q ss_pred             CCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcC----CCCc
Q 017143           82 TPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSG----SIGQ  157 (376)
Q Consensus        82 t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g----~iG~  157 (376)
                      +|+..|++++++||+  +|||||||||++  .+|+++|+++|+ ++|+.+++   .||.|.+..+|++|++|    .+|+
T Consensus        74 ~P~~~H~e~a~~aL~--aGkHVL~EKPla--~~Ea~el~~~A~-~~g~~l~v---~~f~p~~~~vr~~i~~~~~i~~~~~  145 (343)
T TIGR01761        74 IVGGQGSALARALLA--RGIHVLQEHPLH--PRDIQDLLRLAE-RQGRRYLV---NTFYPHLPAVRRFIEYARQLHHRRG  145 (343)
T ss_pred             CCCccHHHHHHHHHh--CCCeEEEcCCCC--HHHHHHHHHHHH-HcCCEEEE---EecCHHHHHHHHHHHcchhHhhcCC
Confidence            478899999999999  999999999998  799999999995 55999998   46999999999999998    6777


Q ss_pred             eEEEEEeeccCCcccccCccccccccCCcccccccccHHHHHHHHhC-CCCeEEEEecccccccCccccCCCCCcccccE
Q 017143          158 VKMVAIREHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVG-SNPMRVMASGAVDVNHKDEMYNGKVPDIIDNA  236 (376)
Q Consensus       158 i~~~~~~~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G-~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~  236 (376)
                      +.++...+.                  -++++++    +|++.+++| ..+.++.+.+...   .          ...+-
T Consensus       146 ~~~i~~~~~------------------~~v~~dl----ldil~~~lgg~~~~~i~~~~~~~---~----------~~~f~  190 (343)
T TIGR01761       146 PRFVEATCG------------------VQVLYST----LDILARALGGVGPWSLESPGGDL---S----------PFPMR  190 (343)
T ss_pred             CCcceeecC------------------Cccccch----HHHHHHHhCCCCceEEEeecccc---C----------CCCce
Confidence            766665321                  1234554    889999998 6777887765210   0          01234


Q ss_pred             EEEEEecCCcEEEEEEEEeecCCCC------ceEEEEEecCCeeeeecc
Q 017143          237 YVIVEFENGSRGMLDLCMFAEGSKN------EQEIVVVGNTGKGEAFVP  279 (376)
Q Consensus       237 ~~~l~~~~G~~~~l~~~~~~~~~~~------~~~~~i~Gt~G~i~~~~~  279 (376)
                      .+.+...+ ...+|..-........      -.++.+..+.|++.+...
T Consensus       191 ~~~~~i~~-~p~~l~~~n~l~~~dpD~~~~~~hri~~g~~~G~L~L~~~  238 (343)
T TIGR01761       191 GLQGVIAG-VPLSLNLQNYLDPADPDGHSLIMHRLSLGTPEGHLSLVSS  238 (343)
T ss_pred             EEEEEECC-ceEEEEEecccCCCCCcchhhhheeEEEeccCcEEEEecC
Confidence            44555533 4445544222211111      227888888888887543

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=99.96  E-value=8.9e-29  Score=195.78  Aligned_cols=120  Identities=34%  Similarity=0.590  Sum_probs=111.0

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      +||||||+|.+|+.|++.+.... +++++++++|++++   ++++++++++++  .|+|+++|++++++|+|+|+||+..
T Consensus         1 i~v~iiG~G~~g~~~~~~~~~~~-~~~~v~~v~d~~~~---~~~~~~~~~~~~--~~~~~~~ll~~~~~D~V~I~tp~~~   74 (120)
T PF01408_consen    1 IRVGIIGAGSIGRRHLRALLRSS-PDFEVVAVCDPDPE---RAEAFAEKYGIP--VYTDLEELLADEDVDAVIIATPPSS   74 (120)
T ss_dssp             EEEEEESTSHHHHHHHHHHHHTT-TTEEEEEEECSSHH---HHHHHHHHTTSE--EESSHHHHHHHTTESEEEEESSGGG
T ss_pred             CEEEEECCcHHHHHHHHHHHhcC-CCcEEEEEEeCCHH---HHHHHHHHhccc--chhHHHHHHHhhcCCEEEEecCCcc
Confidence            69999999999999998887763 79999999999998   677788899987  9999999999888999999999999


Q ss_pred             cHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEee
Q 017143           87 HYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGL  135 (376)
Q Consensus        87 h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~  135 (376)
                      |.+++++|++  +|+||+||||++.+.+++++|.++++ ++|+.++|||
T Consensus        75 h~~~~~~~l~--~g~~v~~EKP~~~~~~~~~~l~~~a~-~~~~~~~Vg~  120 (120)
T PF01408_consen   75 HAEIAKKALE--AGKHVLVEKPLALTLEEAEELVEAAK-EKGVKVMVGY  120 (120)
T ss_dssp             HHHHHHHHHH--TTSEEEEESSSSSSHHHHHHHHHHHH-HHTSCEEEE-
T ss_pred             hHHHHHHHHH--cCCEEEEEcCCcCCHHHHHHHHHHHH-HhCCEEEEeC
Confidence            9999999999  99999999999999999999999995 4599999986

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=99.91  E-value=2.3e-23  Score=186.60  Aligned_cols=168  Identities=17%  Similarity=0.249  Sum_probs=138.8

Q ss_pred             CCCCCceeEEEEeCChhhHHHHHHhhh-hcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEE
Q 017143            1 MAANDTVKYGIIGMGMMGREHFINLHH-LRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVV   79 (376)
Q Consensus         1 m~~~~~~~v~iiG~G~~g~~~~~~~~~-~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~   79 (376)
                      |++|+++||||||+|.+|+.|+..+.. .  +++++++|+|++++   ++++++++++.. ..|+++++++.+  +|+|+
T Consensus         1 ~~~m~~irIGIIG~G~IG~~~a~~L~~~~--~~~el~aV~dr~~~---~a~~~a~~~g~~-~~~~~~eell~~--~D~Vv   72 (271)
T PRK13302          1 MSSRPELRVAIAGLGAIGKAIAQALDRGL--PGLTLSAVAVRDPQ---RHADFIWGLRRP-PPVVPLDQLATH--ADIVV   72 (271)
T ss_pred             CCCCCeeEEEEECccHHHHHHHHHHHhcC--CCeEEEEEECCCHH---HHHHHHHhcCCC-cccCCHHHHhcC--CCEEE
Confidence            888889999999999999999999876 4  78999999999987   677888888864 688999999865  89999


Q ss_pred             EeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEE--eeccccCHHHHHHHHHHHcCCCCc
Q 017143           80 VSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQV--GLEYRYMPPVAKLIQIVKSGSIGQ  157 (376)
Q Consensus        80 i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v--~~~~r~~p~~~~~k~~i~~g~iG~  157 (376)
                      +|+|++.|.+++.++|+  +||||+|++..  .+.++++|.+++ +++|+++++  |+..+|        +.+++|.+|+
T Consensus        73 i~tp~~~h~e~~~~aL~--aGk~Vi~~s~g--al~~~~~L~~~A-~~~g~~l~v~sGa~~g~--------d~l~~g~iG~  139 (271)
T PRK13302         73 EAAPASVLRAIVEPVLA--AGKKAIVLSVG--ALLRNEDLIDLA-RQNGGQIIVPTGALLGL--------DAVTAAAEGT  139 (271)
T ss_pred             ECCCcHHHHHHHHHHHH--cCCcEEEecch--hHHhHHHHHHHH-HHcCCEEEEcchHHHhH--------HHHHHHHcCC
Confidence            99999999999999999  99999999755  446889999999 556999999  555555        5789999999


Q ss_pred             eEEEEEeeccCCcccccCccccccccCCcccccccccHHHHHH
Q 017143          158 VKMVAIREHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMR  200 (376)
Q Consensus       158 i~~~~~~~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~  200 (376)
                      +..+.+.....+     ..|.      |++.++...|++|.++
T Consensus       140 ~~~v~~~trkpp-----~~~~------g~~~~~~~~~dld~~~  171 (271)
T PRK13302        140 IHSVKMITRKPP-----DGLK------GAPFLVTNNIDIDGLT  171 (271)
T ss_pred             ceEEEEEEecCc-----hHhc------cChhhhhcCCCccccc
Confidence            999988533322     4453      5566677788888543

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=99.84  E-value=2.1e-20  Score=166.77  Aligned_cols=142  Identities=16%  Similarity=0.175  Sum_probs=125.8

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhC---CCCCEEEE
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDS---GLCDVVVV   80 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~D~V~i   80 (376)
                      |+++||||||+|.+|..|+..+.+.  +++++++++|+++++  ...+.++++|++ ..|+++++|+++   +++|+|++
T Consensus         2 m~klrVAIIGtG~IGt~hm~~l~~~--~~velvAVvdid~es--~gla~A~~~Gi~-~~~~~ie~LL~~~~~~dIDiVf~   76 (302)
T PRK08300          2 MSKLKVAIIGSGNIGTDLMIKILRS--EHLEPGAMVGIDPES--DGLARARRLGVA-TSAEGIDGLLAMPEFDDIDIVFD   76 (302)
T ss_pred             CCCCeEEEEcCcHHHHHHHHHHhcC--CCcEEEEEEeCChhh--HHHHHHHHcCCC-cccCCHHHHHhCcCCCCCCEEEE
Confidence            4689999999999999999998886  899999999999874  344668889987 567999999998   78999999


Q ss_pred             eCCCCccHHHHHHHHcCCCCCeEEEecCCC--------CCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHc
Q 017143           81 STPNMTHYQILMDIINHPKPHHVLVEKPLC--------TTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKS  152 (376)
Q Consensus        81 ~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a--------~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~  152 (376)
                      +||+..|.+++.++++  +|+||++|||.+        .|.++.      . +..++.+..+.+.++.|.+..+++ +.+
T Consensus        77 AT~a~~H~e~a~~a~e--aGk~VID~sPA~~~PlvVP~VN~~~~------~-~~~~~~iia~p~~ati~~v~Al~~-v~~  146 (302)
T PRK08300         77 ATSAGAHVRHAAKLRE--AGIRAIDLTPAAIGPYCVPAVNLDEH------L-DAPNVNMVTCGGQATIPIVAAVSR-VAP  146 (302)
T ss_pred             CCCHHHHHHHHHHHHH--cCCeEEECCccccCCcccCcCCHHHH------h-cccCCCEEECccHHHHHHHHHhcc-cCc
Confidence            9999999999999999  999999999999        888865      3 334678999999999999999999 888


Q ss_pred             CCCCceEE
Q 017143          153 GSIGQVKM  160 (376)
Q Consensus       153 g~iG~i~~  160 (376)
                      +.+|+|..
T Consensus       147 ~~~~eIva  154 (302)
T PRK08300        147 VHYAEIVA  154 (302)
T ss_pred             Cceeeeee
Confidence            89999983

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=99.84  E-value=2.1e-20  Score=167.26  Aligned_cols=227  Identities=17%  Similarity=0.169  Sum_probs=156.9

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      |+||||||+|.+|+.|+..+.+.  ++++++++++++... ++   ..+.++..+..|+|++++  .+++|+|++|||+.
T Consensus         1 m~rVgIiG~G~iG~~~~~~l~~~--~~~~l~~v~~~~~~~-~~---~~~~~~~~~~~~~d~~~l--~~~~DvVve~t~~~   72 (265)
T PRK13303          1 MMKVAMIGFGAIGAAVLELLEHD--PDLRVDWVIVPEHSI-DA---VRRALGEAVRVVSSVDAL--PQRPDLVVECAGHA   72 (265)
T ss_pred             CcEEEEECCCHHHHHHHHHHhhC--CCceEEEEEEcCCCH-HH---HhhhhccCCeeeCCHHHh--ccCCCEEEECCCHH
Confidence            47999999999999999999887  899999999765431 11   222221113588999998  46799999999999


Q ss_pred             ccHHHHHHHHcCCCCCeEEEecCCCCC-HHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEEEEe
Q 017143           86 THYQILMDIINHPKPHHVLVEKPLCTT-VADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIR  164 (376)
Q Consensus        86 ~h~~~~~~al~~~~g~~Vl~EKP~a~~-~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~~~~  164 (376)
                      .|.+++.++|+  +||||+||||.+.+ .+...+|.++| +++|+.+++      .+.+...+.+++.+.+|.+..+.++
T Consensus        73 ~~~e~~~~aL~--aGk~Vvi~s~~Al~d~~~~~~L~~~A-~~~g~~l~v------~sga~gg~d~l~~~~~g~~~~v~~~  143 (265)
T PRK13303         73 ALKEHVVPILK--AGIDCAVISVGALADEALRERLEQAA-EAGGARLHL------LSGAIGGIDALAAAKEGGLDEVTYT  143 (265)
T ss_pred             HHHHHHHHHHH--cCCCEEEeChHHhcCHHHHHHHHHHH-HHCCCEEEE------eChHhhCHHHHHHHHhCCceEEEEE
Confidence            99999999999  99999999999876 55578899999 556888777      5566677899999999999999885


Q ss_pred             eccCCcccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCccccCCCCCcccccEEEEEEecC
Q 017143          165 EHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFEN  244 (376)
Q Consensus       165 ~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~  244 (376)
                      ....+     ..|+....          ...+| +.++.| +..-..+........    |     ...+++.+.+.+.+
T Consensus       144 ~~k~p-----~~~~~~~~----------~~~~d-l~~~~~-~~~~f~G~a~ea~~~----~-----p~n~nvaaa~~la~  197 (265)
T PRK13303        144 GRKPP-----KSWRGTPA----------EQLCD-LDALTE-PTVIFEGSAREAARL----F-----PKNANVAATVALAG  197 (265)
T ss_pred             EecCh-----hHhCcChh----------Hhccc-cccccc-CeEEEEeCHHHHHHH----C-----CchhhHHHHHHHhc
Confidence            43322     35543221          12567 667777 455555554432211    1     12234444444432


Q ss_pred             -C---cEEEEEEEEeecC-CCCceEEEEEecCCeeeeec
Q 017143          245 -G---SRGMLDLCMFAEG-SKNEQEIVVVGNTGKGEAFV  278 (376)
Q Consensus       245 -G---~~~~l~~~~~~~~-~~~~~~~~i~Gt~G~i~~~~  278 (376)
                       |   ..+.+..+   |+ ..+..++++.|+-|.+++..
T Consensus       198 ~g~d~~~v~~~ad---p~~~~n~h~i~~~g~~g~~~~~~  233 (265)
T PRK13303        198 LGLDRTRVELIAD---PAVTRNVHEIEARGAFGEFEFEM  233 (265)
T ss_pred             cCccceEEEEEEC---CCCCCceEEEEEEeccEEEEEEE
Confidence             2   34444322   22 23445999999999987653

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=99.83  E-value=4.1e-20  Score=164.68  Aligned_cols=140  Identities=18%  Similarity=0.197  Sum_probs=119.3

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ++||||||+|.+|..|+..+.+.  +++++++++|+++++.  ..++++++|++ ..|++++++++++++|+|+++||+.
T Consensus         1 klrVAIIG~G~IG~~h~~~ll~~--~~~elvaV~d~d~es~--~la~A~~~Gi~-~~~~~~e~ll~~~dIDaV~iaTp~~   75 (285)
T TIGR03215         1 KVKVAIIGSGNIGTDLMYKLLRS--EHLEMVAMVGIDPESD--GLARARELGVK-TSAEGVDGLLANPDIDIVFDATSAK   75 (285)
T ss_pred             CcEEEEEeCcHHHHHHHHHHHhC--CCcEEEEEEeCCcccH--HHHHHHHCCCC-EEECCHHHHhcCCCCCEEEECCCcH
Confidence            48999999999999998888876  8999999999998742  33567889987 6678999999998999999999999


Q ss_pred             ccHHHHHHHHcCCCCCeEEEecCCC--------CCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCc
Q 017143           86 THYQILMDIINHPKPHHVLVEKPLC--------TTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQ  157 (376)
Q Consensus        86 ~h~~~~~~al~~~~g~~Vl~EKP~a--------~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~  157 (376)
                      .|.+++.++++  +||||+||||++        .+.+++.       +..++.+..+.+.++.|.+..++++.+.+ .++
T Consensus        76 ~H~e~a~~al~--aGk~VIdekPa~~~plvvp~VN~~~~~-------~~~~~~iv~c~~~atip~~~al~r~~d~~-~~~  145 (285)
T TIGR03215        76 AHARHARLLAE--LGKIVIDLTPAAIGPYVVPAVNLDEHL-------DAPNVNMVTCGGQATIPIVAAISRVAPVH-YAE  145 (285)
T ss_pred             HHHHHHHHHHH--cCCEEEECCccccCCccCCCcCHHHHh-------cCcCCCEEEcCcHHHHHHHHHHHHhhccc-cEE
Confidence            99999999999  999999999999        5655433       33366788889999999999999998876 556


Q ss_pred             eEE
Q 017143          158 VKM  160 (376)
Q Consensus       158 i~~  160 (376)
                      +..
T Consensus       146 iv~  148 (285)
T TIGR03215       146 IVA  148 (285)
T ss_pred             EEE
Confidence            554

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>TIGR03855 NAD_NadX aspartate dehydrogenase

Probab=99.82  E-value=1.9e-19  Score=156.00  Aligned_cols=122  Identities=14%  Similarity=0.175  Sum_probs=110.5

Q ss_pred             CcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCC
Q 017143           32 GVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCT  111 (376)
Q Consensus        32 ~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~  111 (376)
                      ++++++|||++++   +++++++++|++  .|+++++|++ +++|+|++|||+..|.+++.++|+  +||||+||||.++
T Consensus         1 ~~eLvaV~D~~~e---~a~~~a~~~g~~--~~~d~~eLl~-~~vDaVviatp~~~H~e~a~~aL~--aGkhVl~~s~gAl   72 (229)
T TIGR03855         1 NFEIAAVYDRNPK---DAKELAERCGAK--IVSDFDEFLP-EDVDIVVEAASQEAVKEYAEKILK--NGKDLLIMSVGAL   72 (229)
T ss_pred             CeEEEEEECCCHH---HHHHHHHHhCCc--eECCHHHHhc-CCCCEEEECCChHHHHHHHHHHHH--CCCCEEEECCccc
Confidence            4789999999988   788889999965  8999999998 469999999999999999999999  9999999999998


Q ss_pred             -CHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEEEEeeccC
Q 017143          112 -TVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRF  168 (376)
Q Consensus       112 -~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~~~~~~~~  168 (376)
                       +.+++++|.+++ +++|++++++      +.+...++.|++|.+|.+..+.++....
T Consensus        73 ad~e~~~~l~~aA-~~~g~~l~i~------sGai~g~d~l~a~~ig~~~~V~i~~~k~  123 (229)
T TIGR03855        73 ADRELRERLREVA-RSSGRKVYIP------SGAIGGLDALKAASLGRIERVVLTTTKP  123 (229)
T ss_pred             CCHHHHHHHHHHH-HhcCCEEEEC------hHHHHHHHHHHhcccCCceEEEEEEecC
Confidence             789999999999 5569999999      5889999999999999999999864443

Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=99.82  E-value=2.4e-19  Score=160.53  Aligned_cols=146  Identities=17%  Similarity=0.170  Sum_probs=124.3

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      |+||||||+|.+|+.|+..+.+.. .++++++++|++++   ++++++++++.+  .|+++++++.  ++|+|++|+|+.
T Consensus         1 mmrIgIIG~G~iG~~ia~~l~~~~-~~~elv~v~d~~~~---~a~~~a~~~~~~--~~~~~~ell~--~~DvVvi~a~~~   72 (265)
T PRK13304          1 MLKIGIVGCGAIASLITKAILSGR-INAELYAFYDRNLE---KAENLASKTGAK--ACLSIDELVE--DVDLVVECASVN   72 (265)
T ss_pred             CCEEEEECccHHHHHHHHHHHcCC-CCeEEEEEECCCHH---HHHHHHHhcCCe--eECCHHHHhc--CCCEEEEcCChH
Confidence            369999999999999999887751 27999999999987   567777788854  8999999993  599999999999


Q ss_pred             ccHHHHHHHHcCCCCCeEEEecCCCC-CHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEEEEe
Q 017143           86 THYQILMDIINHPKPHHVLVEKPLCT-TVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIR  164 (376)
Q Consensus        86 ~h~~~~~~al~~~~g~~Vl~EKP~a~-~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~~~~  164 (376)
                      .|.+++.++++  +|+||+|++|.++ +.+.+++|.++| +++|+.+++      .+.....++.|+++.+|++..+.+.
T Consensus        73 ~~~~~~~~al~--~Gk~Vvv~s~gAl~d~~~~~~L~~aA-~~~g~~l~v------~sga~~g~d~i~a~~~G~i~~V~~~  143 (265)
T PRK13304         73 AVEEVVPKSLE--NGKDVIIMSVGALADKELFLKLYKLA-KENNCKIYL------PSGAIVGLDGIKAASLGEIKSVTLT  143 (265)
T ss_pred             HHHHHHHHHHH--cCCCEEEEchHHhcCHHHHHHHHHHH-HHcCCEEEE------eCchHHhHHHHHHHhcCCccEEEEE
Confidence            99999999999  8999999999876 788899999999 556888877      2345666899999999999999886


Q ss_pred             eccC
Q 017143          165 EHRF  168 (376)
Q Consensus       165 ~~~~  168 (376)
                      ....
T Consensus       144 ~~k~  147 (265)
T PRK13304        144 TRKP  147 (265)
T ss_pred             EecC
Confidence            4443

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=99.79  E-value=6.4e-18  Score=152.34  Aligned_cols=189  Identities=10%  Similarity=0.033  Sum_probs=132.5

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      +++||+|||+|.+|+.|++.+.+.  ++++|++|+|+++..  +.   .+..++  ..+.+.++++  +++|+|++|||+
T Consensus         2 ~kIRVgIVG~GnIGr~~a~al~~~--pd~ELVgV~dr~~~~--~~---~~~~~v--~~~~d~~e~l--~~iDVViIctPs   70 (324)
T TIGR01921         2 SKIRAAIVGYGNLGRSVEKAIQQQ--PDMELVGVFSRRGAE--TL---DTETPV--YAVADDEKHL--DDVDVLILCMGS   70 (324)
T ss_pred             CCcEEEEEeecHHHHHHHHHHHhC--CCcEEEEEEcCCcHH--HH---hhcCCc--cccCCHHHhc--cCCCEEEEcCCC
Confidence            479999999999999999999887  899999999998631  22   222332  2445666666  459999999999


Q ss_pred             CccHHHHHHHHcCCCCCeEEEecCCCCCH-HHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEEEE
Q 017143           85 MTHYQILMDIINHPKPHHVLVEKPLCTTV-ADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAI  163 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~~Vl~EKP~a~~~-~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~~~  163 (376)
                      ..|.+.+.++|+  +|+||.++||...+. +..++|-++| ++++....++  ..|+|.+..+++++.+..+-+=....+
T Consensus        71 ~th~~~~~~~L~--aG~NVV~s~~~h~~~p~~~~~ld~AA-k~~g~vsvi~--~GwDPG~~si~r~~~ea~lp~g~~yt~  145 (324)
T TIGR01921        71 ATDIPEQAPYFA--QFANTVDSFDNHRDIPRHRQVMDAAA-KAAGNVSVIS--TGWDPGMFSINRVYGEAVLPKGQTYTF  145 (324)
T ss_pred             ccCHHHHHHHHH--cCCCEEECCCcccCCHHHHHHHHHHH-HHcCCEEEEE--CCCCcChHHHHHHHHhccCCCCcceec
Confidence            999999999999  999999999987765 4555566666 5433333333  799999999999998777654433332


Q ss_pred             eeccCCcccccCccccccccCC--cccccccccHHHHHHHHh-CCCCeEEEEecc
Q 017143          164 REHRFPFLVKVNDWNRFNENTG--GTLVEKCCHFFDLMRLFV-GSNPMRVMASGA  215 (376)
Q Consensus       164 ~~~~~~~~~~~~~w~~~~~~~g--G~l~d~g~H~ld~~~~l~-G~~~~~V~a~~~  215 (376)
                         +++...+..++--+...|.  +..+.  +..+|.+.+++ | ++.++.+...
T Consensus       146 ---wG~g~s~ghs~a~~~~~Gv~~a~~~t--ip~~dal~~v~~G-e~~~l~~~~~  194 (324)
T TIGR01921       146 ---WGPGLSQGHSDAVRRIDGVKKAVQYT--LPSEDALEKARRG-EAPELTGKQT  194 (324)
T ss_pred             ---cCCCcCchhhhhhcccCCcccceEEE--EehHHHHHHHHcC-Cccccccccc
Confidence               2233333333322222221  13444  55999999999 7 6667766643

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=99.77  E-value=1.1e-17  Score=171.37  Aligned_cols=153  Identities=18%  Similarity=0.230  Sum_probs=132.3

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcE------------EEEEeCCChhhHHHHHHHHHhc-CCC-CCc-cCCHHHH
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVS------------VVCIADPHLQSRQQALKLANAF-DWP-LKV-FPGHQEL   69 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~------------~~~v~d~~~~~~~~~~~~~~~~-~~~-~~~-~~~~~~~   69 (376)
                      ++.||+|||+|.+|+.|+..|.+.  ++++            +++|+|++.+   .++++++++ ++. +.. +.|.+++
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~--~~~~~~~~~~~~~~~~lV~VaD~~~~---~a~~la~~~~~~~~v~lDv~D~e~L  642 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASV--KTISYYGDDSEEPTDVHVIVASLYLK---DAKETVEGIENAEAVQLDVSDSESL  642 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhC--cCccccccccccccccEEEEECCCHH---HHHHHHHhcCCCceEEeecCCHHHH
Confidence            356999999999999999999887  6655            7899999987   677777776 543 233 7888888


Q ss_pred             hhC-CCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHH--H
Q 017143           70 LDS-GLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAK--L  146 (376)
Q Consensus        70 l~~-~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~--~  146 (376)
                      ++. ..+|+|++|+|+..|.++++.|++  +|+||++||   .+.+++++|.++| +++|+.+++++.  |+|.+..  +
T Consensus       643 ~~~v~~~DaVIsalP~~~H~~VAkaAie--aGkHvv~ek---y~~~e~~~L~e~A-k~AGV~~m~e~G--lDPGid~~lA  714 (1042)
T PLN02819        643 LKYVSQVDVVISLLPASCHAVVAKACIE--LKKHLVTAS---YVSEEMSALDSKA-KEAGITILCEMG--LDPGIDHMMA  714 (1042)
T ss_pred             HHhhcCCCEEEECCCchhhHHHHHHHHH--cCCCEEECc---CCHHHHHHHHHHH-HHcCCEEEECCc--cCHHHHHHHH
Confidence            872 349999999999999999999999  999999999   7899999999999 556999999999  9999999  9


Q ss_pred             HHHHHcC--CCCceEEEEEeeccCCc
Q 017143          147 IQIVKSG--SIGQVKMVAIREHRFPF  170 (376)
Q Consensus       147 k~~i~~g--~iG~i~~~~~~~~~~~~  170 (376)
                      +++|+++  ++|+|..+..++...|.
T Consensus       715 ~~~Id~~~~~~GkI~s~~s~~GGLP~  740 (1042)
T PLN02819        715 MKMIDDAHERGGKVKSFTSYCGGLPS  740 (1042)
T ss_pred             HHHHHhhcccCCcEEEEEEEEcCccC
Confidence            9999988  89999999997766663

>PRK06270 homoserine dehydrogenase; Provisional

Probab=99.77  E-value=6.4e-18  Score=156.66  Aligned_cols=150  Identities=22%  Similarity=0.226  Sum_probs=120.8

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhc-------CCCcEEEEEeCCChh-------hHHHHHHHHHhcCCCCCc------cCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLR-------SQGVSVVCIADPHLQ-------SRQQALKLANAFDWPLKV------FPG   65 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~-------~~~~~~~~v~d~~~~-------~~~~~~~~~~~~~~~~~~------~~~   65 (376)
                      ++||+|+|+|.+|+.++..+.+.+       +.+++|++|+|++..       ..+++.+++++++.. ..      +.+
T Consensus         2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~-~~~~~~~~~~d   80 (341)
T PRK06270          2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKL-ADYPEGGGEIS   80 (341)
T ss_pred             eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCc-ccCccccccCC
Confidence            599999999999999998886652       237999999996421       223556666666532 23      348


Q ss_pred             HHHHhhCCCCCEEEEeCCCCcc-----HHHHHHHHcCCCCCeEEEe--cCCCCCHHHHHHHHHHHHhCCCeEEE-Eeecc
Q 017143           66 HQELLDSGLCDVVVVSTPNMTH-----YQILMDIINHPKPHHVLVE--KPLCTTVADCKKVVDAARKRPDILVQ-VGLEY  137 (376)
Q Consensus        66 ~~~~l~~~~~D~V~i~t~~~~h-----~~~~~~al~~~~g~~Vl~E--KP~a~~~~e~~~l~~~a~~~~~~~~~-v~~~~  137 (376)
                      +++++.++++|+|+++||+..|     .+++++||+  +|+||+|+  ||++.+.   .+|.++|+ ++|+.++ .+...
T Consensus        81 ~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~--~GkhVVtaNK~pla~~~---~eL~~~A~-~~g~~~~~ea~v~  154 (341)
T PRK06270         81 GLEVIRSVDADVVVEATPTNIETGEPALSHCRKALE--RGKHVVTSNKGPLALAY---KELKELAK-KNGVRFRYEATVG  154 (341)
T ss_pred             HHHHhhccCCCEEEECCcCcccccchHHHHHHHHHH--CCCEEEcCCcHHHHhhH---HHHHHHHH-HcCCEEEEeeeee
Confidence            9999998889999999999887     789999999  99999996  8998865   46888884 4577665 58899


Q ss_pred             ccCHHHHHHHHHHHcCCCCceEEEE
Q 017143          138 RYMPPVAKLIQIVKSGSIGQVKMVA  162 (376)
Q Consensus       138 r~~p~~~~~k~~i~~g~iG~i~~~~  162 (376)
                      ++.|.++.+|+++..+.||+|..+-
T Consensus       155 ~glPii~~l~~~l~g~~I~~I~GIl  179 (341)
T PRK06270        155 GAMPIINLAKETLAGNDIKSIKGIL  179 (341)
T ss_pred             echhHHHHHHhhcccCceEEEEEEE
Confidence            9999999999999999999987764

>PRK06349 homoserine dehydrogenase; Provisional

Probab=99.76  E-value=6.6e-18  Score=161.07  Aligned_cols=148  Identities=14%  Similarity=0.185  Sum_probs=122.1

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhc-------CCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCE
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLR-------SQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDV   77 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~-------~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~   77 (376)
                      +++||||||+|.+|+.++..+.+..       +.++++++|++++.++   ...+ ...+  ...++|+++++.++++|+
T Consensus         2 ~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~---~~~~-~~~~--~~~~~d~~~ll~d~~iDv   75 (426)
T PRK06349          2 KPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEK---DRGV-DLPG--ILLTTDPEELVNDPDIDI   75 (426)
T ss_pred             CeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhh---ccCC-CCcc--cceeCCHHHHhhCCCCCE
Confidence            4799999999999998887775541       2379999999998763   2211 1112  357899999999999999


Q ss_pred             EEEeCCC-CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEE-EEeeccccCHHHHHHHHHHHcCCC
Q 017143           78 VVVSTPN-MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILV-QVGLEYRYMPPVAKLIQIVKSGSI  155 (376)
Q Consensus        78 V~i~t~~-~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~-~v~~~~r~~p~~~~~k~~i~~g~i  155 (376)
                      |+++|++ ..|++++++||+  +||||+||+| +....++++|.++|+ ++|+.+ +.+...++.|.++.+++.+.++.|
T Consensus        76 Vve~tg~~~~~~~~~~~aL~--~GkhVVtaNK-~~~a~~~~eL~~lA~-~~gv~l~fEasV~ggiPii~~l~~~l~~~~I  151 (426)
T PRK06349         76 VVELMGGIEPARELILKALE--AGKHVVTANK-ALLAVHGAELFAAAE-EKGVDLYFEAAVAGGIPIIKALREGLAANRI  151 (426)
T ss_pred             EEECCCCchHHHHHHHHHHH--CCCeEEEcCH-HHHHHHHHHHHHHHH-HcCCcEEEEEEeeccCchHHHHHhhcccCCe
Confidence            9999876 688999999999  9999999988 678899999999995 457754 567888999999999999999999


Q ss_pred             CceEEEE
Q 017143          156 GQVKMVA  162 (376)
Q Consensus       156 G~i~~~~  162 (376)
                      |+|..+-
T Consensus       152 ~~I~GIl  158 (426)
T PRK06349        152 TRVMGIV  158 (426)
T ss_pred             eEEEEEE
Confidence            9998763

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=99.74  E-value=2.6e-17  Score=146.78  Aligned_cols=141  Identities=15%  Similarity=0.153  Sum_probs=121.1

Q ss_pred             ceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      ++||+|||+ |.||+.++..+...  ++++|++++|+++++.   ... .+++++  .|++++++++  ++|+|+.+|||
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~--~~~elvav~d~~~~~~---~~~-~~~~i~--~~~dl~~ll~--~~DvVid~t~p   70 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAA--EDLELVAAVDRPGSPL---VGQ-GALGVA--ITDDLEAVLA--DADVLIDFTTP   70 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEecCCccc---ccc-CCCCcc--ccCCHHHhcc--CCCEEEECCCH
Confidence            479999998 99999999888877  8899999999988742   222 456654  8899999997  49999999999


Q ss_pred             CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEEEE
Q 017143           85 MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAI  163 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~~~  163 (376)
                      +.|.+++..|++  +|+||+|+ |.+.+.+++++|.+++ ++.++.+..++..++....+.++++.  +.+|. +.+++
T Consensus        71 ~~~~~~~~~al~--~G~~vvig-ttG~s~~~~~~l~~aa-~~~~v~~s~n~s~g~~~~~~l~~~aa--~~l~~-~d~ei  142 (257)
T PRK00048         71 EATLENLEFALE--HGKPLVIG-TTGFTEEQLAELEEAA-KKIPVVIAPNFSIGVNLLMKLAEKAA--KYLGD-YDIEI  142 (257)
T ss_pred             HHHHHHHHHHHH--cCCCEEEE-CCCCCHHHHHHHHHHh-cCCCEEEECcchHHHHHHHHHHHHHH--HhcCC-CCEEE
Confidence            999999999999  99999999 8899999999999977 66788889999999999999999988  47884 44444

>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=99.67  E-value=6.8e-15  Score=135.11  Aligned_cols=208  Identities=17%  Similarity=0.171  Sum_probs=156.0

Q ss_pred             eeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEe-CCChhhHHHHHHHHHhcCCC-C-----------------------
Q 017143            7 VKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIA-DPHLQSRQQALKLANAFDWP-L-----------------------   60 (376)
Q Consensus         7 ~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~-d~~~~~~~~~~~~~~~~~~~-~-----------------------   60 (376)
                      .||+|+| +|.+|..|+..+.+++ ..++|++++ +.+.+   ++.+++++|+-. +                       
T Consensus         2 k~VaILGsTGSIG~~tL~vi~~~p-~~f~VvaLaa~~n~~---~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~   77 (385)
T PRK05447          2 KRITILGSTGSIGTQTLDVIRRNP-DRFRVVALSAGKNVE---LLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVL   77 (385)
T ss_pred             ceEEEEcCChHHHHHHHHHHHhCc-cccEEEEEEcCCCHH---HHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEE
Confidence            5899999 8999999999998873 489999999 66665   555566655432 0                       


Q ss_pred             CccCCHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEE-ecCCCCCHHHHHHHHHHHHhCCCeEEEEeecccc
Q 017143           61 KVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLV-EKPLCTTVADCKKVVDAARKRPDILVQVGLEYRY  139 (376)
Q Consensus        61 ~~~~~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~-EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~  139 (376)
                      ..-+.+.++++.+++|+|+++.+-..|...+++|++  +||+|.+ +|+.-.  .....+.+++++. |+.+..-     
T Consensus        78 ~G~~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~--aGK~VaLANKEslV--~aG~~i~~~a~~~-g~~i~PV-----  147 (385)
T PRK05447         78 AGEEGLCELAALPEADVVVAAIVGAAGLLPTLAAIR--AGKRIALANKESLV--CAGELVMDAAKKS-GAQILPV-----  147 (385)
T ss_pred             EChhHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHH--CCCcEEEeCHHHHH--hhHHHHHHHHHHc-CCeEEEE-----
Confidence            012346677777889999999999999999999999  9999999 999754  7777888888544 5444333     


Q ss_pred             CHHHHHHHHHHHcC---CCCceEEEEEeeccCCccc---------------ccCccccccccC--CcccccccccHHHHH
Q 017143          140 MPPVAKLIQIVKSG---SIGQVKMVAIREHRFPFLV---------------KVNDWNRFNENT--GGTLVEKCCHFFDLM  199 (376)
Q Consensus       140 ~p~~~~~k~~i~~g---~iG~i~~~~~~~~~~~~~~---------------~~~~w~~~~~~~--gG~l~d~g~H~ld~~  199 (376)
                      ++....+++.+++|   .++++....   ..+++..               .-++|..-++..  .-.|++-|.|.++ +
T Consensus       148 DSEh~ai~q~l~~~~~~~i~~iilTA---SGGpFr~~~~~~l~~vt~~~al~HPnW~MG~kitiDSAtm~NKgle~IE-A  223 (385)
T PRK05447        148 DSEHSAIFQCLPGEKQEGVEKIILTA---SGGPFRDWPLEELANVTPEQALKHPNWSMGRKITIDSATMMNKGLEVIE-A  223 (385)
T ss_pred             CHHHHHHHHHhcCCCccccceEEEec---CCCcccCCCHHHHhcCCHHHHhcCCCCCCCCceeecHHHHhcchHHHHh-H
Confidence            99999999999988   466665432   3444332               125677654432  3368999999999 9


Q ss_pred             HHHhCCCCeEEEEecccccccCccccCCCCCcccccEEEEEEecCCcEE
Q 017143          200 RLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENGSRG  248 (376)
Q Consensus       200 ~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~G~~~  248 (376)
                      .||||-++.+|.+..+.                ....+.+++|.||.+.
T Consensus       224 ~~Lf~~~~~~I~vvIHp----------------qSivHsmVef~DGsv~  256 (385)
T PRK05447        224 HWLFGLPYEQIEVVIHP----------------QSIIHSMVEYVDGSVL  256 (385)
T ss_pred             HHHcCCChhhEEEEECC----------------cCceeEEEEEeCCcEE
Confidence            99999878888877543                2458899999998664

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=99.65  E-value=1e-15  Score=137.04  Aligned_cols=132  Identities=18%  Similarity=0.215  Sum_probs=102.7

Q ss_pred             eeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCC-hhhH-HHHHHHHH--hcCCCCCccCCHHHHhhCCCCCEEEEe
Q 017143            7 VKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPH-LQSR-QQALKLAN--AFDWPLKVFPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         7 ~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~-~~~~-~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~D~V~i~   81 (376)
                      +||+|+| +|.||+.++..+.+.  ++++|++++|+. +... ..+.++..  .+++  ..|+|++++ . .++|+|+++
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~--~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv--~~~~d~~~l-~-~~~DvVIdf   75 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAA--EGLQLVAAFERHGSSLQGTDAGELAGIGKVGV--PVTDDLEAV-E-TDPDVLIDF   75 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEecCCccccCCCHHHhcCcCcCCc--eeeCCHHHh-c-CCCCEEEEC
Confidence            7999999 699999999999887  899999999953 3211 01112211  1344  478999999 3 359999999


Q ss_pred             CCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHH
Q 017143           82 TPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIV  150 (376)
Q Consensus        82 t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i  150 (376)
                      |||..|.+++..|++  +|+||+|+|| +.+.+++++|.++| +++|+++++++|+-.  .+..+.+++
T Consensus        76 T~p~~~~~~~~~al~--~g~~vVigtt-g~~~e~~~~l~~aA-~~~g~~v~~a~NfSl--Gv~ll~~~~  138 (266)
T TIGR00036        76 TTPEGVLNHLKFALE--HGVRLVVGTT-GFSEEDKQELADLA-EKAGIAAVIAPNFSI--GVNLMFKLL  138 (266)
T ss_pred             CChHHHHHHHHHHHH--CCCCEEEECC-CCCHHHHHHHHHHH-hcCCccEEEECcccH--HHHHHHHHH
Confidence            999999999999999  9999999999 78999999999999 666888888766544  343333333

>PF08635 ox_reductase_C: Putative oxidoreductase C terminal; InterPro: IPR013944 This is the C terminus of putative oxidoreductases

Probab=99.36  E-value=6.8e-12  Score=94.87  Aligned_cols=130  Identities=24%  Similarity=0.373  Sum_probs=93.2

Q ss_pred             ccCHHHHHHHHHHHcCCCCceEEEEEeecc-CCcccccCccccccccCCcccccccccHHHHHHHHhCC-CCeEEEEecc
Q 017143          138 RYMPPVAKLIQIVKSGSIGQVKMVAIREHR-FPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGS-NPMRVMASGA  215 (376)
Q Consensus       138 r~~p~~~~~k~~i~~g~iG~i~~~~~~~~~-~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~-~~~~V~a~~~  215 (376)
                      ||.+.++++|++|++..+ ++..+..++.. +..... ..| +++..+||++.++++|..|+++||.|+ +..+|.+.+.
T Consensus         1 RYl~~vq~~K~ii~en~l-~vm~~~aRY~~ay~~~~K-~~W-W~ks~sgGpiVEQaTHfcDL~RYfgGeVdldtV~a~sv   77 (142)
T PF08635_consen    1 RYLKAVQKMKQIIKENNL-PVMATNARYNCAYEHIAK-PFW-WNKSKSGGPIVEQATHFCDLSRYFGGEVDLDTVQAHSV   77 (142)
T ss_pred             CchHHHHHHHHHHHhcCC-ceEEEEeeeeeehhccCC-chh-hhhcccCCCeeeehhhHHHHHHHhcCceeeeeEEEEec
Confidence            899999999999987654 44545554322 222222 333 466889999999999999999999996 5677887765


Q ss_pred             cccccCccc----cC----CCCCcccccEEEEEEecCCcEEEEEEEEeecCCCCceEEEEEec
Q 017143          216 VDVNHKDEM----YN----GKVPDIIDNAYVIVEFENGSRGMLDLCMFAEGSKNEQEIVVVGN  270 (376)
Q Consensus       216 ~~~~~~~~~----~~----~~~~~~~d~~~~~l~~~~G~~~~l~~~~~~~~~~~~~~~~i~Gt  270 (376)
                      ......+..    ++    +....++....++.+|++|++++++......|..+.-+++|+++
T Consensus        78 e~~e~~g~LskipvdEs~Ip~e~RiPR~T~A~Wky~sGAVGsl~H~~~LqG~~y~telev~aD  140 (142)
T PF08635_consen   78 EWDEPPGKLSKIPVDESKIPPENRIPRATSATWKYKSGAVGSLTHALALQGTNYSTELEVYAD  140 (142)
T ss_pred             cccCCCCcCCCCCcCcccCChhhcCcceeeeEEEeccCceehhhhhhhccccccceEEEEecc
Confidence            533322211    11    12234667899999999999999998887788888878888874

>PF02894 GFO_IDH_MocA_C: Oxidoreductase family, C-terminal alpha/beta domain; InterPro: IPR004104 Enzymes containing this domain utilise NADP or NAD, and are known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=99.30  E-value=1.3e-11  Score=96.15  Aligned_cols=101  Identities=27%  Similarity=0.378  Sum_probs=70.9

Q ss_pred             HHHHHcCCCCceEEEEEeeccCCc-ccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCcccc
Q 017143          147 IQIVKSGSIGQVKMVAIREHRFPF-LVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMY  225 (376)
Q Consensus       147 k~~i~~g~iG~i~~~~~~~~~~~~-~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~  225 (376)
                      |++|++|.||+|+.+++.+..... ......|+.....+||.++|+|+|.+|+++||+|.++..+.+.......      
T Consensus         1 KelI~~g~iG~v~~v~~~~~~~~~~~~~~~~~~~~~~~~gG~l~d~g~H~id~~~~l~G~~~~~~~~~~~~~~~------   74 (115)
T PF02894_consen    1 KELIEEGEIGKVRSVQGEFRFYRAPRPPRWRWRRDPEAGGGALLDLGIHQIDLVRWLFGSPPTVVAAAGGQRQL------   74 (115)
T ss_dssp             HHHHHTTTTSSEEEEEEEEEEEEBHTHHHHSGGGSHHTTTSHHHHTHHHHHHHHHHHHTSEEEEEEEEEESESS------
T ss_pred             ChhhcCCCCCCEEEEEEeeecccccCCccccccccccCCceEEEeehhHHHHHHHHHhCCCcEEEEEEEecccc------
Confidence            789999999999999863322211 1112233333357899999999999999999999777777766432111      


Q ss_pred             CCCCCcccccE--EEEEEecCCcEEEEEEEE
Q 017143          226 NGKVPDIIDNA--YVIVEFENGSRGMLDLCM  254 (376)
Q Consensus       226 ~~~~~~~~d~~--~~~l~~~~G~~~~l~~~~  254 (376)
                       ....+.+|..  .+.+++.+|..+++.+++
T Consensus        75 -~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  104 (115)
T PF02894_consen   75 -PEAQEDEDAADRFANFEFGSGAVATLTASF  104 (115)
T ss_dssp             -TTTTSSESEEEEEEEEEETTEEEEEEEEES
T ss_pred             -CCCCCccccceEEEEEEeCCEEEEEEEEcc
Confidence             1122566777  899999999999887654

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, C-terminal domain is almost always associated with the oxidoreductase, N-terminal domain (see IPR000683 from INTERPRO).; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 3IP3_E 3DTY_B 3Q2I_A 2P2S_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A 3NT2_A 3NT4_A ....

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=99.24  E-value=8.2e-12  Score=108.41  Aligned_cols=103  Identities=14%  Similarity=0.199  Sum_probs=81.5

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      .+.+|+|||+|.+|..++..+.. ...++++++++|.++++   .....  .++++..++++++++.+.++|.|+||+|+
T Consensus        83 ~~~rV~IIGaG~iG~~l~~~~~~-~~~g~~ivgv~D~d~~~---~~~~i--~g~~v~~~~~l~~li~~~~iD~ViIa~P~  156 (213)
T PRK05472         83 RTWNVALVGAGNLGRALLNYNGF-EKRGFKIVAAFDVDPEK---IGTKI--GGIPVYHIDELEEVVKENDIEIGILTVPA  156 (213)
T ss_pred             CCcEEEEECCCHHHHHHHHhhhc-ccCCcEEEEEEECChhh---cCCEe--CCeEEcCHHHHHHHHHHCCCCEEEEeCCc
Confidence            46899999999999987765332 23689999999998763   22111  13333355788999988889999999999


Q ss_pred             CccHHHHHHHHcCCCC-CeEEEecCCCCCHHH
Q 017143           85 MTHYQILMDIINHPKP-HHVLVEKPLCTTVAD  115 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g-~~Vl~EKP~a~~~~e  115 (376)
                      ..|.+++..+++  +| ++|+|+||++.++.+
T Consensus       157 ~~~~~i~~~l~~--~Gi~~il~~~p~~~~v~~  186 (213)
T PRK05472        157 EAAQEVADRLVE--AGIKGILNFAPVRLSVPE  186 (213)
T ss_pred             hhHHHHHHHHHH--cCCCEEeecCceeecCCC
Confidence            999999999999  77 799999999998763

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=99.14  E-value=8.1e-10  Score=92.58  Aligned_cols=142  Identities=16%  Similarity=0.190  Sum_probs=108.0

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      ++|+|||||.||+..+..+...+ .+++++++||++.+   +++++.+.++..  ..+++++++++  +|+|+=|..+..
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~-~~~e~v~v~D~~~e---k~~~~~~~~~~~--~~s~ide~~~~--~DlvVEaAS~~A   72 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGR-VDFELVAVYDRDEE---KAKELEASVGRR--CVSDIDELIAE--VDLVVEAASPEA   72 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCC-cceeEEEEecCCHH---HHHHHHhhcCCC--ccccHHHHhhc--cceeeeeCCHHH
Confidence            58999999999999888777654 68999999999998   788888777754  45999999954  999999999999


Q ss_pred             cHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEEEEe
Q 017143           87 HYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIR  164 (376)
Q Consensus        87 h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~~~~  164 (376)
                      -.+++.++|+  +|++|++=-=.|+.-++..+......+.++..+++-.      ...=.-..+.+-..|.|..+...
T Consensus        73 v~e~~~~~L~--~g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pS------GAiGGlD~l~aar~g~i~~V~lt  142 (255)
T COG1712          73 VREYVPKILK--AGIDVIVMSVGALADEGLRERLRELAKCGGARVYLPS------GAIGGLDALAAARVGGIEEVVLT  142 (255)
T ss_pred             HHHHhHHHHh--cCCCEEEEechhccChHHHHHHHHHHhcCCcEEEecC------ccchhHHHHHHhhcCCeeEEEEE
Confidence            9999999999  9999999888888766666655444366666655432      22222334444456777777663

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=99.09  E-value=7.3e-10  Score=102.76  Aligned_cols=95  Identities=18%  Similarity=0.215  Sum_probs=78.3

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC----------------CCccCCHHHH
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP----------------LKVFPGHQEL   69 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~   69 (376)
                      |+||||+|+|.||+.++..+...  ++++|++++|++++   ....+++++|++                +.++++++++
T Consensus         1 ~ikVaI~G~GrIGr~va~al~~~--~d~eLvav~d~~~~---~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el   75 (341)
T PRK04207          1 MIKVGVNGYGTIGKRVADAVAAQ--PDMELVGVAKTKPD---YEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDL   75 (341)
T ss_pred             CeEEEEECCCHHHHHHHHHHhcC--CCcEEEEEECCChH---HHHHHHHhcCCCccccCccccccccCCceEEcCChhHh
Confidence            58999999999999999998887  89999999998765   445555544432                1245678888


Q ss_pred             hhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCC
Q 017143           70 LDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPL  109 (376)
Q Consensus        70 l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~  109 (376)
                      +..  +|+|+.|||+..|.+.+..+++  +|+.|+.--|.
T Consensus        76 ~~~--vDVVIdaT~~~~~~e~a~~~~~--aGk~VI~~~~~  111 (341)
T PRK04207         76 LEK--ADIVVDATPGGVGAKNKELYEK--AGVKAIFQGGE  111 (341)
T ss_pred             hcc--CCEEEECCCchhhHHHHHHHHH--CCCEEEEcCCC
Confidence            854  9999999999999999999999  88999997774

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=99.04  E-value=3.8e-09  Score=92.44  Aligned_cols=142  Identities=13%  Similarity=0.065  Sum_probs=108.0

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ++||||||+|.+|+.....+.....+++++++|++++++   ++++++.+  .  ..++|+++|+.. ++|+|+=|..+.
T Consensus         2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~---~~~~~~~~--~--~~~~~l~~ll~~-~~DlVVE~A~~~   73 (267)
T PRK13301          2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAAD---LPPALAGR--V--ALLDGLPGLLAW-RPDLVVEAAGQQ   73 (267)
T ss_pred             ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHH---HHHHhhcc--C--cccCCHHHHhhc-CCCEEEECCCHH
Confidence            489999999999998888776643357999999999886   56666654  3  488999999765 499999999999


Q ss_pred             ccHHHHHHHHcCCCCCeEEEecCCCC-CHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEEEEe
Q 017143           86 THYQILMDIINHPKPHHVLVEKPLCT-TVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIR  164 (376)
Q Consensus        86 ~h~~~~~~al~~~~g~~Vl~EKP~a~-~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~~~~  164 (376)
                      .=.+++.++|+  +|+++++=-+.|+ +.+-.++|.++| ++++..+++-.---.      --..|+....|.+..+.++
T Consensus        74 av~e~~~~iL~--~g~dlvv~SvGALaD~~~~~~l~~~A-~~~g~~i~ipSGAig------GlD~l~aa~~~~~~~v~~~  144 (267)
T PRK13301         74 AIAEHAEGCLT--AGLDMIICSAGALADDALRARLIAAA-EAGGARIRVPAGAIA------GLDYLQAVAGRDDAEVVYE  144 (267)
T ss_pred             HHHHHHHHHHh--cCCCEEEEChhHhcCHHHHHHHHHHH-HhCCCEEEEeChHHH------hHHHHHHhhccCceEEEEE
Confidence            99999999999  9999999999887 566667788888 556777777543322      2233433345666665553

>PRK08618 ornithine cyclodeaminase; Validated

Probab=99.04  E-value=5.3e-10  Score=103.40  Aligned_cols=124  Identities=19%  Similarity=0.226  Sum_probs=92.1

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH----hcCCCCCccCCHHHHhhCCCCCEEEEe
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN----AFDWPLKVFPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~D~V~i~   81 (376)
                      .-+++|||+|.+|+.|+..+...  .+++.+.|+++++++   ++++++    ++++++..++++++++.+  .|+|+.|
T Consensus       127 ~~~v~iiGaG~~a~~~~~al~~~--~~~~~v~v~~r~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~~~~--aDiVi~a  199 (325)
T PRK08618        127 AKTLCLIGTGGQAKGQLEAVLAV--RDIERVRVYSRTFEK---AYAFAQEIQSKFNTEIYVVNSADEAIEE--ADIIVTV  199 (325)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhc--CCccEEEEECCCHHH---HHHHHHHHHHhcCCcEEEeCCHHHHHhc--CCEEEEc
Confidence            46899999999999999888776  688999999999984   444444    456654568999999965  8999999


Q ss_pred             CCCCccHHHHHHHHcCCCCCeE---------EEecCCCCCHHHHHHHH-----HHHHhCCCeEEEEeeccccCHH
Q 017143           82 TPNMTHYQILMDIINHPKPHHV---------LVEKPLCTTVADCKKVV-----DAARKRPDILVQVGLEYRYMPP  142 (376)
Q Consensus        82 t~~~~h~~~~~~al~~~~g~~V---------l~EKP~a~~~~e~~~l~-----~~a~~~~~~~~~v~~~~r~~p~  142 (376)
                      ||.. |..+. .+++  .|+||         ..|+|. .....++.++     +.+ ++.|.........++.+.
T Consensus       200 T~s~-~p~i~-~~l~--~G~hV~~iGs~~p~~~E~~~-~~~~~a~~vvvD~~~~~~-~e~G~~~~~~~~~~~~~~  268 (325)
T PRK08618        200 TNAK-TPVFS-EKLK--KGVHINAVGSFMPDMQELPS-EAIARANKVVVESKEAAL-EETGDLIVPLKEGLISKD  268 (325)
T ss_pred             cCCC-CcchH-HhcC--CCcEEEecCCCCcccccCCH-HHHhhCCEEEECCHHHHH-HhcCCcccHHHcCCCChh
Confidence            9866 88777 9999  99999         689997 3444554433     444 334555555555666554

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.96  E-value=2.8e-08  Score=88.49  Aligned_cols=148  Identities=14%  Similarity=0.192  Sum_probs=95.6

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCC-ChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeC
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADP-HLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t   82 (376)
                      |+++||+|||+|.+|..++..+.+.....++.+.++++ +++   +++++++++++.  .++++++++++  .|+|++++
T Consensus         2 m~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~--~DiViiav   74 (245)
T PRK07634          2 LKKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVE---KLDQLQARYNVS--TTTDWKQHVTS--VDTIVLAM   74 (245)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHH---HHHHHHHHcCcE--EeCChHHHHhc--CCEEEEec
Confidence            44689999999999999988887652124553334555 455   567777778864  77899999875  89999999


Q ss_pred             CCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHH------------HHhCCCeEEEEeeccccCH-HHHHHHHH
Q 017143           83 PNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDA------------ARKRPDILVQVGLEYRYMP-PVAKLIQI  149 (376)
Q Consensus        83 ~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~------------a~~~~~~~~~v~~~~r~~p-~~~~~k~~  149 (376)
                      |++.|.+++.+....-.++ +++--..+.+.+..++....            +.-..+....+ +....++ ....++++
T Consensus        75 p~~~~~~v~~~l~~~~~~~-~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~~~-~~~~~~~~~~~~v~~l  152 (245)
T PRK07634         75 PPSAHEELLAELSPLLSNQ-LVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSISLYT-MGQSVNETHKETLQLI  152 (245)
T ss_pred             CHHHHHHHHHHHHhhccCC-EEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCeEEe-eCCCCCHHHHHHHHHH
Confidence            9999999887653211233 55555666777776665421            00111333332 2223333 34667777


Q ss_pred             HHcCCCCceEEEE
Q 017143          150 VKSGSIGQVKMVA  162 (376)
Q Consensus       150 i~~g~iG~i~~~~  162 (376)
                      ++  .+|.+..+.
T Consensus       153 f~--~~G~~~~~~  163 (245)
T PRK07634        153 LK--GIGTSQLCT  163 (245)
T ss_pred             HH--hCCCEEEEC
Confidence            76  488887653

>PRK08374 homoserine dehydrogenase; Provisional

Probab=98.92  E-value=1.3e-08  Score=94.24  Aligned_cols=148  Identities=19%  Similarity=0.215  Sum_probs=103.4

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhc-------CCCcEEEEEeCCChhh-------HHHHHHHHHhcCCCCCcc--------
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLR-------SQGVSVVCIADPHLQS-------RQQALKLANAFDWPLKVF--------   63 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~-------~~~~~~~~v~d~~~~~-------~~~~~~~~~~~~~~~~~~--------   63 (376)
                      +++|+|+|+|.+|...+..+.+..       +-+++|++|+|++...       .+++.+..++.+.. ..|        
T Consensus         2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~-~~~~~~~~~~~   80 (336)
T PRK08374          2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKL-SNWGNDYEVYN   80 (336)
T ss_pred             eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCch-hhccccccccC
Confidence            599999999999997666655421       1358999999865221       12334444444321 112        


Q ss_pred             CCHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEE-Eec-CCCCCHHHHHHHHHHHHhCCCeEEEEee-ccccC
Q 017143           64 PGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVL-VEK-PLCTTVADCKKVVDAARKRPDILVQVGL-EYRYM  140 (376)
Q Consensus        64 ~~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl-~EK-P~a~~~~e~~~l~~~a~~~~~~~~~v~~-~~r~~  140 (376)
                      -++++++.+.++|+|+-+|++..+.++..++++  +|+||. ..| |++...+   +|.+++++ +++.+.... ..---
T Consensus        81 ~~~~ell~~~~~DVvVd~t~~~~a~~~~~~al~--~G~~VVtanK~~la~~~~---el~~la~~-~~~~~~~ea~v~~Gi  154 (336)
T PRK08374         81 FSPEEIVEEIDADIVVDVTNDKNAHEWHLEALK--EGKSVVTSNKPPIAFHYD---ELLDLANE-RNLPYLFEATVMAGT  154 (336)
T ss_pred             CCHHHHHhcCCCCEEEECCCcHHHHHHHHHHHh--hCCcEEECCHHHHHhCHH---HHHHHHHH-cCCeEEEeccccccC
Confidence            178899987779999999999999999999999  999998 788 8885555   56677744 466665444 33357


Q ss_pred             HHHHHHHHHHHcCCCCceEEEEE
Q 017143          141 PPVAKLIQIVKSGSIGQVKMVAI  163 (376)
Q Consensus       141 p~~~~~k~~i~~g~iG~i~~~~~  163 (376)
                      |.+..+++.+...   +|..++.
T Consensus       155 Pii~~l~~~l~g~---~i~~i~G  174 (336)
T PRK08374        155 PIIGLLRENLLGD---TVKRIEA  174 (336)
T ss_pred             CchHHHHhhcccc---ceEEEEE
Confidence            8999999988543   4555544

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=98.90  E-value=4.2e-09  Score=98.02  Aligned_cols=91  Identities=19%  Similarity=0.237  Sum_probs=69.8

Q ss_pred             ceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcC-CC---CCccCCHHHHhhCCCCCEEEE
Q 017143            6 TVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFD-WP---LKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         6 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      |+||+|||+ |.+|+.|+..+.++  +++++++++++...    .+.+++.++ +.   ...|++++++. ..++|+|++
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~--p~~elv~v~~~~~~----g~~l~~~~~~~~~~~~~~~~~~~~~~-~~~vD~Vf~   74 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNH--PEVEIVAVTSRSSA----GKPLSDVHPHLRGLVDLVLEPLDPEI-LAGADVVFL   74 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcC--CCceEEEEECcccc----CcchHHhCcccccccCceeecCCHHH-hcCCCEEEE
Confidence            489999996 99999999999988  89999999985432    223333322 11   12466666653 345999999


Q ss_pred             eCCCCccHHHHHHHHcCCCCCeEEE
Q 017143           81 STPNMTHYQILMDIINHPKPHHVLV  105 (376)
Q Consensus        81 ~t~~~~h~~~~~~al~~~~g~~Vl~  105 (376)
                      |+|+..|.+++.++++  +|+||+-
T Consensus        75 alP~~~~~~~v~~a~~--aG~~VID   97 (343)
T PRK00436         75 ALPHGVSMDLAPQLLE--AGVKVID   97 (343)
T ss_pred             CCCcHHHHHHHHHHHh--CCCEEEE
Confidence            9999999999999999  8898875

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=98.87  E-value=7.4e-09  Score=81.72  Aligned_cols=120  Identities=22%  Similarity=0.238  Sum_probs=86.6

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHH--HHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQ--QALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      |||+|+|+ |.||+..+..+.+.  ++++|++++++.++...  ...++.......+..+++++++++.  +|+|+-+|.
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~--~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~--~DVvIDfT~   76 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILES--PGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEE--ADVVIDFTN   76 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHS--TTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH---SEEEEES-
T ss_pred             CEEEEECCCCHHHHHHHHHHHhc--CCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhccc--CCEEEEcCC
Confidence            79999999 99999999999887  89999999999872110  0112221111224588999999998  999999998


Q ss_pred             CCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeec
Q 017143           84 NMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLE  136 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~  136 (376)
                      +..-.+.+..|++  +|+++.+=--. .+.++.++|.+++ ++  +++....|
T Consensus        77 p~~~~~~~~~~~~--~g~~~ViGTTG-~~~~~~~~l~~~a-~~--~~vl~a~N  123 (124)
T PF01113_consen   77 PDAVYDNLEYALK--HGVPLVIGTTG-FSDEQIDELEELA-KK--IPVLIAPN  123 (124)
T ss_dssp             HHHHHHHHHHHHH--HT-EEEEE-SS-SHHHHHHHHHHHT-TT--SEEEE-SS
T ss_pred             hHHhHHHHHHHHh--CCCCEEEECCC-CCHHHHHHHHHHh-cc--CCEEEeCC
Confidence            8888899999999  88999885553 4778888888888 44  55655544

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.80  E-value=3.6e-08  Score=74.15  Aligned_cols=88  Identities=24%  Similarity=0.315  Sum_probs=68.3

Q ss_pred             eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC-CHHHHhhCCCCCEEEEeCCCCc
Q 017143            8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP-GHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      ||||||+|.+|...+..+.+..-...++..+++++++   +++++++++++.  .+. +.+++++.  .|+|++|+||+.
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~---~~~~~~~~~~~~--~~~~~~~~~~~~--advvilav~p~~   73 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPE---KAAELAKEYGVQ--ATADDNEEAAQE--ADVVILAVKPQQ   73 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHH---HHHHHHHHCTTE--EESEEHHHHHHH--TSEEEE-S-GGG
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHH---HHHHHHHhhccc--cccCChHHhhcc--CCEEEEEECHHH
Confidence            7999999999999999887761123787777799998   677888888854  555 89999986  899999999999


Q ss_pred             cHHHHHHH--HcCCCCCeEE
Q 017143           87 HYQILMDI--INHPKPHHVL  104 (376)
Q Consensus        87 h~~~~~~a--l~~~~g~~Vl  104 (376)
                      ..+++.+.  +.  .++.|+
T Consensus        74 ~~~v~~~i~~~~--~~~~vi   91 (96)
T PF03807_consen   74 LPEVLSEIPHLL--KGKLVI   91 (96)
T ss_dssp             HHHHHHHHHHHH--TTSEEE
T ss_pred             HHHHHHHHhhcc--CCCEEE
Confidence            98888775  55  555554

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.78  E-value=8.3e-08  Score=82.86  Aligned_cols=163  Identities=18%  Similarity=0.220  Sum_probs=118.3

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC--
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN--   84 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~--   84 (376)
                      -+|.|.|+- +|..++.+++.- .++++++++.....+   +..+++.+||+|  .|.+.|++-.+  +|+..|....  
T Consensus         5 ksVvV~Gtr-FGq~Ylaaf~~~-~~~~eLaGiLaqGSe---RSRaLAh~~GVp--ly~~~eelpd~--idiACVvVrsai   75 (361)
T COG4693           5 KSVVVCGTR-FGQFYLAAFAAA-PPRFELAGILAQGSE---RSRALAHRLGVP--LYCEVEELPDD--IDIACVVVRSAI   75 (361)
T ss_pred             ceEEEecch-HHHHHHHHhccC-CCCceeehhhhcccH---HHHHHHHHhCCc--cccCHhhCCCC--CCeEEEEEeeee
Confidence            388888875 678888887665 389999999988777   678899999998  99999999887  6654444332  


Q ss_pred             --CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcC-CCCceEEE
Q 017143           85 --MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSG-SIGQVKMV  161 (376)
Q Consensus        85 --~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g-~iG~i~~~  161 (376)
                        ..=.++++..|+  +|+||+.|-|+  -++|..+|.++|+ +.|....||-.+-.-|+.++..+..+.- .--++..+
T Consensus        76 ~Gg~Gs~larall~--RGi~VlqEHPl--~p~di~~l~rlA~-rqG~~y~vNTfYPhlpA~rrfi~~~rql~~~~~p~~v  150 (361)
T COG4693          76 VGGQGSALARALLA--RGIHVLQEHPL--HPRDIQDLLRLAE-RQGRRYLVNTFYPHLPAVRRFIEYARQLHRRRGPRFV  150 (361)
T ss_pred             ecCCcHHHHHHHHH--cccHHHHhCCC--CHHHHHHHHHHHH-HhCcEEEEeccCCCcHHHHHHHHHHHHHHHhcCCCeE
Confidence              355788888899  99999999997  5789999999995 4599999987666666665544433210 11234444


Q ss_pred             EEeeccCCcccccCccccccccCCcccccccccHHHHHHHHhCC
Q 017143          162 AIREHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGS  205 (376)
Q Consensus       162 ~~~~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~  205 (376)
                      +..+.                      ..+++-.+|++..++|.
T Consensus       151 eat~g----------------------vQvlystLDil~~aLgg  172 (361)
T COG4693         151 EATCG----------------------VQVLYSTLDILARALGG  172 (361)
T ss_pred             Eeecc----------------------hhhhHHHHHHHHHHhcC
Confidence            44321                      12245568988888885

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=98.68  E-value=1.5e-07  Score=85.97  Aligned_cols=93  Identities=16%  Similarity=0.169  Sum_probs=73.7

Q ss_pred             EEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC----------------CccCCHHHHhhC
Q 017143            9 YGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL----------------KVFPGHQELLDS   72 (376)
Q Consensus         9 v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~l~~   72 (376)
                      |||+|+|.||+.|++++...  ++++|++|+|.+++   .+..++.+++++.                ..+.++++++..
T Consensus         1 VaInG~GrIGr~varav~~~--~d~elVaVnD~~~~---~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~   75 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQ--DDMKLVGVTKTSPD---FEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEK   75 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhC--CCcEEEEEecCChH---HHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhc
Confidence            69999999999999998876  89999999998887   4555555555431                125579999954


Q ss_pred             CCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCC
Q 017143           73 GLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPL  109 (376)
Q Consensus        73 ~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~  109 (376)
                        +|+|+.|||...|..-+...++.| -|.|++=-|.
T Consensus        76 --vDiVve~Tp~~~~~~na~~~~~~G-akaVl~~~p~  109 (333)
T TIGR01546        76 --VDIVVDATPGGIGAKNKPLYEKAG-VKAIFQGGEK  109 (333)
T ss_pred             --CCEEEECCCCCCChhhHHHHHhCC-cCEEEECCCC
Confidence              999999999999998888888854 3678886664

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=98.68  E-value=3e-08  Score=77.60  Aligned_cols=113  Identities=22%  Similarity=0.245  Sum_probs=82.4

Q ss_pred             eCChhhHHHHHHhhhhcCC-CcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCccHHHH
Q 017143           13 GMGMMGREHFINLHHLRSQ-GVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMTHYQIL   91 (376)
Q Consensus        13 G~G~~g~~~~~~~~~~~~~-~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~h~~~~   91 (376)
                      |+|.+|+..+..+...+.. ++++++|++++ ...... ......+.  ..+++++++++..++|+|+=||++..-.++.
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~dvvVE~t~~~~~~~~~   76 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKD-WAASFPDE--AFTTDLEELIDDPDIDVVVECTSSEAVAEYY   76 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETT-HHHHHTHS--CEESSHHHHHTHTT-SEEEE-SSCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhh-hhhhcccc--cccCCHHHHhcCcCCCEEEECCCchHHHHHH
Confidence            8999999999988877322 89999999998 110001 11111122  4789999999977799999999999889999


Q ss_pred             HHHHcCCCCCeEEEe--cCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 017143           92 MDIINHPKPHHVLVE--KPLCTTVADCKKVVDAARKRPDILVQV  133 (376)
Q Consensus        92 ~~al~~~~g~~Vl~E--KP~a~~~~e~~~l~~~a~~~~~~~~~v  133 (376)
                      .++|+  +|+||..-  +|++ +....++|.++| +++|+.++.
T Consensus        77 ~~~L~--~G~~VVt~nk~ala-~~~~~~~L~~~A-~~~g~~~~~  116 (117)
T PF03447_consen   77 EKALE--RGKHVVTANKGALA-DEALYEELREAA-RKNGVRIYY  116 (117)
T ss_dssp             HHHHH--TTCEEEES-HHHHH-SHHHHHHHHHHH-HHHT-EEEE
T ss_pred             HHHHH--CCCeEEEECHHHhh-hHHHHHHHHHHH-HHcCCEEEe
Confidence            99999  99999884  4666 889999999999 455777653

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=98.63  E-value=2.4e-07  Score=82.74  Aligned_cols=145  Identities=19%  Similarity=0.303  Sum_probs=100.5

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHH-------------------HhcCCCCCccC
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLA-------------------NAFDWPLKVFP   64 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~-------------------~~~~~~~~~~~   64 (376)
                      .+++|||+||+|.+|...+.....+  ++++++++.|++.....++-..+                   -+-|- +.+++
T Consensus        15 G~PiRVGlIGAG~mG~~ivtQi~~m--~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGK-i~vT~   91 (438)
T COG4091          15 GKPIRVGLIGAGEMGTGIVTQIASM--PGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGK-IAVTD   91 (438)
T ss_pred             CCceEEEEecccccchHHHHHHhhc--CCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCc-EEEec
Confidence            4689999999999999999999998  99999999999887433322211                   01111 23567


Q ss_pred             CHHHHhhCCCCCEEEEeCCC-CccHHHHHHHHcCCCCCeEEE---ecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccC
Q 017143           65 GHQELLDSGLCDVVVVSTPN-MTHYQILMDIINHPKPHHVLV---EKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYM  140 (376)
Q Consensus        65 ~~~~~l~~~~~D~V~i~t~~-~~h~~~~~~al~~~~g~~Vl~---EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~  140 (376)
                      |.+.++..+.+|+|+-+|-. ..-.++++.|+.  +|||+.+   |--++.-    --|.+.+ ++.|+....+.---- 
T Consensus        92 D~~~i~~~~~IdvIIdATG~p~vGA~~~l~Ai~--h~KHlVMmNVEaDvtIG----p~Lk~~A-d~~GviyS~~~GDeP-  163 (438)
T COG4091          92 DAELIIANDLIDVIIDATGVPEVGAKIALEAIL--HGKHLVMMNVEADVTIG----PILKQQA-DAAGVIYSGGAGDEP-  163 (438)
T ss_pred             chhhhhcCCcceEEEEcCCCcchhhHhHHHHHh--cCCeEEEEEeeeceeec----HHHHHHH-hhcCeEEeccCCCCc-
Confidence            89999999999999998874 577899999999  9999876   4333322    2366777 555877665543222 


Q ss_pred             HHHHHHHHHHHcCCCC-ceEEE
Q 017143          141 PPVAKLIQIVKSGSIG-QVKMV  161 (376)
Q Consensus       141 p~~~~~k~~i~~g~iG-~i~~~  161 (376)
                      .....|-++.++  +| +|+++
T Consensus       164 ~~~mEL~efa~a--~G~evv~a  183 (438)
T COG4091         164 SSCMELYEFASA--LGFEVVSA  183 (438)
T ss_pred             HHHHHHHHHHHh--cCCeEEec
Confidence            234455555553  66 45444

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=98.63  E-value=5.1e-07  Score=83.96  Aligned_cols=150  Identities=17%  Similarity=0.187  Sum_probs=101.2

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH----hcCCCCCccCCHHHHhhCCCCCEEEEe
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN----AFDWPLKVFPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~D~V~i~   81 (376)
                      |++|.|||+|.+|+..+..|++.  .+.+|+ +.||+.++..++.+...    -.-+++.-.+.+.++|++  .|+|+.+
T Consensus         1 m~~ilviGaG~Vg~~va~~la~~--~d~~V~-iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~--~d~VIn~   75 (389)
T COG1748           1 MMKILVIGAGGVGSVVAHKLAQN--GDGEVT-IADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKD--FDLVINA   75 (389)
T ss_pred             CCcEEEECCchhHHHHHHHHHhC--CCceEE-EEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhc--CCEEEEe
Confidence            47899999999999988888887  457766 78999884443333210    011122234567788887  5999999


Q ss_pred             CCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCC-ceEE
Q 017143           82 TPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIG-QVKM  160 (376)
Q Consensus        82 t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG-~i~~  160 (376)
                      .|+..+..++..|++  .|+|++---   ...+...++.+.| +++|+..+.+  .=|+|.+..+--.-....+. +|.+
T Consensus        76 ~p~~~~~~i~ka~i~--~gv~yvDts---~~~~~~~~~~~~a-~~Agit~v~~--~G~dPGi~nv~a~~a~~~~~~~i~s  147 (389)
T COG1748          76 APPFVDLTILKACIK--TGVDYVDTS---YYEEPPWKLDEEA-KKAGITAVLG--CGFDPGITNVLAAYAAKELFDEIES  147 (389)
T ss_pred             CCchhhHHHHHHHHH--hCCCEEEcc---cCCchhhhhhHHH-HHcCeEEEcc--cCcCcchHHHHHHHHHHHhhccccE
Confidence            999999999999999  899987511   1111137788888 5558665554  55788665544333333456 8888


Q ss_pred             EEEeeccC
Q 017143          161 VAIREHRF  168 (376)
Q Consensus       161 ~~~~~~~~  168 (376)
                      +.+.....
T Consensus       148 i~iy~g~~  155 (389)
T COG1748         148 IDIYVGGL  155 (389)
T ss_pred             EEEEEecC
Confidence            87765443

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.62  E-value=8.1e-07  Score=79.68  Aligned_cols=134  Identities=19%  Similarity=0.271  Sum_probs=92.4

Q ss_pred             eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc-CCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF-DWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      ||+|||+|.+|...+..+.+.. .....+.+++++++   +++++++++ ++  ..+++.++++.+  .|+|++|+|++.
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g-~~~~~i~v~~r~~~---~~~~l~~~~~~~--~~~~~~~~~~~~--aDvVilav~p~~   73 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSP-ADVSEIIVSPRNAQ---IAARLAERFPKV--RIAKDNQAVVDR--SDVVFLAVRPQI   73 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCC-CChheEEEECCCHH---HHHHHHHHcCCc--eEeCCHHHHHHh--CCEEEEEeCHHH
Confidence            7999999999999998887651 23444678999887   566777776 34  477899999876  899999999754


Q ss_pred             cHHHHHHH-HcCCCCCeEEEecCCCCCHHHHHHHHHHH------------HhCCCeEEEEeeccccCHHHHHHHHHHHcC
Q 017143           87 HYQILMDI-INHPKPHHVLVEKPLCTTVADCKKVVDAA------------RKRPDILVQVGLEYRYMPPVAKLIQIVKSG  153 (376)
Q Consensus        87 h~~~~~~a-l~~~~g~~Vl~EKP~a~~~~e~~~l~~~a------------~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g  153 (376)
                      -.+++.+. ++  .|++|+... .+.+.++.+++....            ....++..       +.+....++++++  
T Consensus        74 ~~~vl~~l~~~--~~~~vis~~-ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~-------~~~~~~~~~~l~~--  141 (258)
T PRK06476         74 AEEVLRALRFR--PGQTVISVI-AATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTA-------IYPPDPFVAALFD--  141 (258)
T ss_pred             HHHHHHHhccC--CCCEEEEEC-CCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeE-------ecCCHHHHHHHHH--
Confidence            44444332 34  678888876 567888887776431            01223222       2344567888887  


Q ss_pred             CCCceEEE
Q 017143          154 SIGQVKMV  161 (376)
Q Consensus       154 ~iG~i~~~  161 (376)
                      .+|....+
T Consensus       142 ~lG~~~~~  149 (258)
T PRK06476        142 ALGTAVEC  149 (258)
T ss_pred             hcCCcEEE
Confidence            58887664

>PRK06046 alanine dehydrogenase; Validated

Probab=98.62  E-value=1.4e-07  Score=87.24  Aligned_cols=92  Identities=23%  Similarity=0.408  Sum_probs=70.3

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHH-HHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQAL-KLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      ...+++|||+|.+|+.|+..+...  ++++.+.|+|+++++.++.. ++.+.+++++..+++++++++   .|+|++|||
T Consensus       128 ~~~~vgiiG~G~qa~~h~~al~~~--~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~---aDiVv~aTp  202 (326)
T PRK06046        128 DSKVVGIIGAGNQARTQLLALSEV--FDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD---CDILVTTTP  202 (326)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhh--CCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh---CCEEEEecC
Confidence            457999999999999999999887  78999999999998543322 222334554456899999984   899999999


Q ss_pred             CCccHHHH-HHHHcCCCCCeEEE
Q 017143           84 NMTHYQIL-MDIINHPKPHHVLV  105 (376)
Q Consensus        84 ~~~h~~~~-~~al~~~~g~~Vl~  105 (376)
                      +..  +++ .+.++  .|.||.+
T Consensus       203 s~~--P~~~~~~l~--~g~hV~~  221 (326)
T PRK06046        203 SRK--PVVKAEWIK--EGTHINA  221 (326)
T ss_pred             CCC--cEecHHHcC--CCCEEEe
Confidence            753  333 34578  8999985

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=98.61  E-value=5.9e-07  Score=74.62  Aligned_cols=118  Identities=19%  Similarity=0.282  Sum_probs=82.8

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      |.||||||+|.+|......|.+.   +++|. ++|++++   +++++.++ |.  ...+|.+++.+.  .|+|+++.|+.
T Consensus         1 m~~Ig~IGlG~mG~~~a~~L~~~---g~~v~-~~d~~~~---~~~~~~~~-g~--~~~~s~~e~~~~--~dvvi~~v~~~   68 (163)
T PF03446_consen    1 MMKIGFIGLGNMGSAMARNLAKA---GYEVT-VYDRSPE---KAEALAEA-GA--EVADSPAEAAEQ--ADVVILCVPDD   68 (163)
T ss_dssp             -BEEEEE--SHHHHHHHHHHHHT---TTEEE-EEESSHH---HHHHHHHT-TE--EEESSHHHHHHH--BSEEEE-SSSH
T ss_pred             CCEEEEEchHHHHHHHHHHHHhc---CCeEE-eeccchh---hhhhhHHh-hh--hhhhhhhhHhhc--ccceEeecccc
Confidence            47999999999999999998774   88876 6899988   56666655 53  588999999998  79999999997


Q ss_pred             ccHHHHHHH---HcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeecc
Q 017143           86 THYQILMDI---INHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEY  137 (376)
Q Consensus        86 ~h~~~~~~a---l~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~  137 (376)
                      ...+-+...   +..-..-.++++-- +.++++.+++.+.+.++ |+.+.-+...
T Consensus        69 ~~v~~v~~~~~i~~~l~~g~iiid~s-T~~p~~~~~~~~~~~~~-g~~~vdapV~  121 (163)
T PF03446_consen   69 DAVEAVLFGENILAGLRPGKIIIDMS-TISPETSRELAERLAAK-GVRYVDAPVS  121 (163)
T ss_dssp             HHHHHHHHCTTHGGGS-TTEEEEE-S-S--HHHHHHHHHHHHHT-TEEEEEEEEE
T ss_pred             hhhhhhhhhhHHhhccccceEEEecC-Ccchhhhhhhhhhhhhc-cceeeeeeee
Confidence            765554442   22111235777655 57999999999999554 7666665544

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=98.55  E-value=2e-07  Score=73.44  Aligned_cols=90  Identities=20%  Similarity=0.217  Sum_probs=60.2

Q ss_pred             eEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcC-CCCCccCCHH-HHhhCCCCCEEEEeCCC
Q 017143            8 KYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFD-WPLKVFPGHQ-ELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         8 ~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~l~~~~~D~V~i~t~~   84 (376)
                      |++|||+ |.+|..+++.+...  ++++++++++++.+   +.+.+...++ +.-..+++++ +.++..+.|+|++|+|+
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~--~~~~l~av~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~   75 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEH--PDFEVVALAASARS---AGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPH   75 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcC--CCceEEEEEechhh---cCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCc
Confidence            6899995 88899999999988  89999999886543   2333333332 2101122332 33333468999999999


Q ss_pred             CccHHHHH---HHHcCCCCCeEE
Q 017143           85 MTHYQILM---DIINHPKPHHVL  104 (376)
Q Consensus        85 ~~h~~~~~---~al~~~~g~~Vl  104 (376)
                      ..|.+.+.   .+++  .|+.|+
T Consensus        76 ~~~~~~~~~~~~~~~--~g~~vi   96 (122)
T smart00859       76 GVSKEIAPLLPKAAE--AGVKVI   96 (122)
T ss_pred             HHHHHHHHHHHhhhc--CCCEEE
Confidence            99999644   4456  676554

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=98.52  E-value=1.4e-06  Score=78.95  Aligned_cols=147  Identities=19%  Similarity=0.190  Sum_probs=101.9

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhhcC-------CCcEEEEEeCCChhhHHHHHHHHHhcCCC--CCccCCH-----HHH
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHLRS-------QGVSVVCIADPHLQSRQQALKLANAFDWP--LKVFPGH-----QEL   69 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~-------~~~~~~~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~   69 (376)
                      |+++||+|+|+|.+|...+..+++..+       -.+++++|.+++.....       .+..+  ....++.     .++
T Consensus         1 ~~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~   73 (333)
T COG0460           1 MKTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVR-------DLDLLNAEVWTTDGALSLGDEV   73 (333)
T ss_pred             CceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcc-------cccccchhhheecccccccHhh
Confidence            468999999999999988877766521       48999999999876321       11111  1233445     677


Q ss_pred             hhCCCCCEEEEeCCC-----CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHH
Q 017143           70 LDSGLCDVVVVSTPN-----MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVA  144 (376)
Q Consensus        70 l~~~~~D~V~i~t~~-----~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~  144 (376)
                      +.+.++|+|+=+++.     .. .++.++||+  +||||..---.. -.....+|.++|++.+....+-+-..=--|.+.
T Consensus        74 ~~~~~~dvvve~~~~d~~~~~~-~~~~~~al~--~GkhVVTaNK~~-lA~~~~el~~~A~~~g~~l~yEAtV~gGiPiI~  149 (333)
T COG0460          74 LLDEDIDVVVELVGGDVEPAEP-ADLYLKALE--NGKHVVTANKAL-LALHYHELREAAEKNGVKLLYEATVGGGIPIIK  149 (333)
T ss_pred             hccccCCEEEecCcccCCchhh-HHHHHHHHH--cCCeEECCCchH-hHhhHHHHHHHHHHhCCeEEEEeeeccCcchHH
Confidence            777889988866654     33 689999999  999998753221 233488899999554334455555666689999


Q ss_pred             HHHHHHHcCCCCceEEE
Q 017143          145 KLIQIVKSGSIGQVKMV  161 (376)
Q Consensus       145 ~~k~~i~~g~iG~i~~~  161 (376)
                      .+|+.+...+|-+|..|
T Consensus       150 ~lr~~l~g~~I~~i~GI  166 (333)
T COG0460         150 LLRELLAGDEILSIRGI  166 (333)
T ss_pred             HHHhhcccCceEEEEEE
Confidence            99999985555555544

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=98.51  E-value=3.3e-07  Score=85.47  Aligned_cols=90  Identities=16%  Similarity=0.226  Sum_probs=67.6

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcC-CC---CCccC--CHHHHhhCCCCCEEE
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFD-WP---LKVFP--GHQELLDSGLCDVVV   79 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~-~~---~~~~~--~~~~~l~~~~~D~V~   79 (376)
                      +||+|||+ |.+|..+++.|.++  |.++++++++.+..   ..+.+...++ +.   ...++  +.++++.  ++|+|+
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~h--P~~el~~l~~s~~s---agk~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~DvVf   73 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNH--PEVEITYLVSSRES---AGKPVSEVHPHLRGLVDLNLEPIDEEEIAE--DADVVF   73 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcC--CCceEEEEeccchh---cCCChHHhCccccccCCceeecCCHHHhhc--CCCEEE
Confidence            58999997 99999999999988  99999988765542   2223333332 11   01233  5566664  499999


Q ss_pred             EeCCCCccHHHHHHHHcCCCCCeEEE
Q 017143           80 VSTPNMTHYQILMDIINHPKPHHVLV  105 (376)
Q Consensus        80 i~t~~~~h~~~~~~al~~~~g~~Vl~  105 (376)
                      +|+|+..|.+++.++++  +|++|+-
T Consensus        74 ~alP~~~s~~~~~~~~~--~G~~VID   97 (346)
T TIGR01850        74 LALPHGVSAELAPELLA--AGVKVID   97 (346)
T ss_pred             ECCCchHHHHHHHHHHh--CCCEEEe
Confidence            99999999999999999  8888874

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.47  E-value=6.1e-06  Score=74.87  Aligned_cols=146  Identities=10%  Similarity=0.157  Sum_probs=90.3

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhc-CCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLR-SQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~-~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      .+||+|||+|.||...+..+.+.. -+..+ +.++++++++  ++++++.++|+.  .+++..++++.  .|+|++++|+
T Consensus         3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~-v~v~~r~~~~--~~~~l~~~~g~~--~~~~~~e~~~~--aDvVilav~p   75 (279)
T PRK07679          3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQ-ITVSNRSNET--RLQELHQKYGVK--GTHNKKELLTD--ANILFLAMKP   75 (279)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCcce-EEEECCCCHH--HHHHHHHhcCce--EeCCHHHHHhc--CCEEEEEeCH
Confidence            469999999999999888887651 01134 4568887642  456777777854  67888888765  7999999999


Q ss_pred             CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHH------------HHhCCCeEEEEeecccc-CHHHHHHHHHHH
Q 017143           85 MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDA------------ARKRPDILVQVGLEYRY-MPPVAKLIQIVK  151 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~------------a~~~~~~~~~v~~~~r~-~p~~~~~k~~i~  151 (376)
                      +.-.+.+......-...++++.==-+.+.+..+++...            +....++.++++ .... ......++++++
T Consensus        76 ~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~~-~~~~~~~~~~~v~~l~~  154 (279)
T PRK07679         76 KDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAISP-SKHATAEHIQTAKALFE  154 (279)
T ss_pred             HHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEee-CCCCCHHHHHHHHHHHH
Confidence            88777665543210123566664345577777665421            102223333332 1222 224566777777


Q ss_pred             cCCCCceEEE
Q 017143          152 SGSIGQVKMV  161 (376)
Q Consensus       152 ~g~iG~i~~~  161 (376)
                      .  +|++..+
T Consensus       155 ~--~G~~~~v  162 (279)
T PRK07679        155 T--IGLVSVV  162 (279)
T ss_pred             h--CCcEEEe
Confidence            4  7876544

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=98.47  E-value=4.5e-07  Score=71.21  Aligned_cols=100  Identities=19%  Similarity=0.215  Sum_probs=60.4

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      .++||+|||+|..|......|.+.   +..|++|++++.+   .+++.++..+-  ..+.++++++.+  .|+++|++|+
T Consensus         9 ~~l~I~iIGaGrVG~~La~aL~~a---g~~v~~v~srs~~---sa~~a~~~~~~--~~~~~~~~~~~~--aDlv~iavpD   78 (127)
T PF10727_consen    9 ARLKIGIIGAGRVGTALARALARA---GHEVVGVYSRSPA---SAERAAAFIGA--GAILDLEEILRD--ADLVFIAVPD   78 (127)
T ss_dssp             ---EEEEECTSCCCCHHHHHHHHT---TSEEEEESSCHH----HHHHHHC--TT-------TTGGGCC---SEEEE-S-C
T ss_pred             CccEEEEECCCHHHHHHHHHHHHC---CCeEEEEEeCCcc---ccccccccccc--cccccccccccc--CCEEEEEech
Confidence            479999999999999988888875   8999999999887   44455555442  355677788876  8999999999


Q ss_pred             CccHHHHHHHHcCC---CCCeEEEecCCCCCHHH
Q 017143           85 MTHYQILMDIINHP---KPHHVLVEKPLCTTVAD  115 (376)
Q Consensus        85 ~~h~~~~~~al~~~---~g~~Vl~EKP~a~~~~e  115 (376)
                      +.=.+++.+....+   .| .+++=--.+.+.+-
T Consensus        79 daI~~va~~La~~~~~~~g-~iVvHtSGa~~~~v  111 (127)
T PF10727_consen   79 DAIAEVAEQLAQYGAWRPG-QIVVHTSGALGSDV  111 (127)
T ss_dssp             CHHHHHHHHHHCC--S-TT--EEEES-SS--GGG
T ss_pred             HHHHHHHHHHHHhccCCCC-cEEEECCCCChHHh
Confidence            97666666655410   23 35555455554443

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=98.45  E-value=8.9e-07  Score=81.87  Aligned_cols=94  Identities=20%  Similarity=0.375  Sum_probs=71.7

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      ...++||||+|.+|+.|+.++...  ..++-+.|+|+++++.+...+..+++++++..+++.++++++  .|+|+.|||.
T Consensus       127 ~~~~lgiiG~G~qA~~~l~al~~~--~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~--aDiVitaT~s  202 (325)
T TIGR02371       127 DSSVLGIIGAGRQAWTQLEALSRV--FDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEG--CDILVTTTPS  202 (325)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhc--CCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhcc--CCEEEEecCC
Confidence            457899999999999999999887  578889999999995443333223567554568999999975  8999999986


Q ss_pred             CccHHHH-HHHHcCCCCCeEEEe
Q 017143           85 MTHYQIL-MDIINHPKPHHVLVE  106 (376)
Q Consensus        85 ~~h~~~~-~~al~~~~g~~Vl~E  106 (376)
                      ..  +++ .+.++  .|.||.+=
T Consensus       203 ~~--P~~~~~~l~--~g~~v~~v  221 (325)
T TIGR02371       203 RK--PVVKADWVS--EGTHINAI  221 (325)
T ss_pred             CC--cEecHHHcC--CCCEEEec
Confidence            43  333 34578  89998763

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=98.41  E-value=2.8e-07  Score=72.44  Aligned_cols=87  Identities=22%  Similarity=0.346  Sum_probs=64.2

Q ss_pred             eEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcC----CC-CCccC-CHHHHhhCCCCCEEEE
Q 017143            8 KYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFD----WP-LKVFP-GHQELLDSGLCDVVVV   80 (376)
Q Consensus         8 ~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~----~~-~~~~~-~~~~~l~~~~~D~V~i   80 (376)
                      ||+||| +|.+|...+..|.++  |.++++.+++++.+   ..+.+...++    +. ...-+ +.+++   .++|+|+.
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~h--p~~e~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~Dvvf~   72 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEH--PDFELVALVSSSRS---AGKPLSEVFPHPKGFEDLSVEDADPEEL---SDVDVVFL   72 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT--STEEEEEEEESTTT---TTSBHHHTTGGGTTTEEEBEEETSGHHH---TTESEEEE
T ss_pred             CEEEECCCCHHHHHHHHHHhcC--CCccEEEeeeeccc---cCCeeehhccccccccceeEeecchhHh---hcCCEEEe
Confidence            799999 899999999999998  99999999998873   2333443332    11 11112 23333   34999999


Q ss_pred             eCCCCccHHHHHHHHcCCCCCeEE
Q 017143           81 STPNMTHYQILMDIINHPKPHHVL  104 (376)
Q Consensus        81 ~t~~~~h~~~~~~al~~~~g~~Vl  104 (376)
                      |+|+..+.+++.++++  +|..|+
T Consensus        73 a~~~~~~~~~~~~~~~--~g~~Vi   94 (121)
T PF01118_consen   73 ALPHGASKELAPKLLK--AGIKVI   94 (121)
T ss_dssp             -SCHHHHHHHHHHHHH--TTSEEE
T ss_pred             cCchhHHHHHHHHHhh--CCcEEE
Confidence            9999999999999999  887554

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK06392 homoserine dehydrogenase; Provisional

Probab=98.38  E-value=1e-05  Score=74.36  Aligned_cols=147  Identities=16%  Similarity=0.209  Sum_probs=94.6

Q ss_pred             eeEEEEeCChhhHHHHHHhhhh-----cCCCcEEEEEeCCChhh-------HHHHHHHHHhcCCCCCccC--CHHHHhhC
Q 017143            7 VKYGIIGMGMMGREHFINLHHL-----RSQGVSVVCIADPHLQS-------RQQALKLANAFDWPLKVFP--GHQELLDS   72 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~-----~~~~~~~~~v~d~~~~~-------~~~~~~~~~~~~~~~~~~~--~~~~~l~~   72 (376)
                      +||+|||+|.+|+..+..+.+.     ...+++|++|+|++...       .+...+..++-.+....++  ++++++. 
T Consensus         1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~-   79 (326)
T PRK06392          1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFE-   79 (326)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhc-
Confidence            4899999999999887776553     12579999999976421       1122222222011101123  6788876 


Q ss_pred             CCCCEEEEeCCCCc----cHHHHHHHHcCCCCCeEEEe--cCCCCCHHHHHHHHHHHHhCCCeEEEE-eeccccCHHHHH
Q 017143           73 GLCDVVVVSTPNMT----HYQILMDIINHPKPHHVLVE--KPLCTTVADCKKVVDAARKRPDILVQV-GLEYRYMPPVAK  145 (376)
Q Consensus        73 ~~~D~V~i~t~~~~----h~~~~~~al~~~~g~~Vl~E--KP~a~~~~e~~~l~~~a~~~~~~~~~v-~~~~r~~p~~~~  145 (376)
                      .++|+|+=|||...    ...+..+||+  +|+||..-  .|++   ....+|.++|++ +++.+.. +-..---|....
T Consensus        80 ~~~DVvVE~t~~~~~g~~~~~~~~~aL~--~G~hVVTaNKgalA---~~~~eL~~lA~~-~g~~~~~eatV~~g~Pii~~  153 (326)
T PRK06392         80 IKPDVIVDVTPASKDGIREKNLYINAFE--HGIDVVTANKSGLA---NHWHDIMDSASK-NRRIIRYEATVAGGVPLFSL  153 (326)
T ss_pred             CCCCEEEECCCCCCcCchHHHHHHHHHH--CCCEEEcCCHHHHH---hhHHHHHHHHHH-cCCeEEEeeeeeeccchhhh
Confidence            47999999998532    4677799999  99999875  3444   556888889954 4655553 334445788887


Q ss_pred             HHHHHHcCCCCceEEEEE
Q 017143          146 LIQIVKSGSIGQVKMVAI  163 (376)
Q Consensus       146 ~k~~i~~g~iG~i~~~~~  163 (376)
                      ++..+...   +|..++.
T Consensus       154 ~~~~~~g~---~i~~i~G  168 (326)
T PRK06392        154 RDYSTLPS---RIKNFRG  168 (326)
T ss_pred             hhhhcccC---CEEEEEE
Confidence            75544433   5666655

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=98.36  E-value=7.8e-06  Score=74.94  Aligned_cols=111  Identities=17%  Similarity=0.137  Sum_probs=78.6

Q ss_pred             eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCC-CCCEEEEeCCCCc
Q 017143            8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSG-LCDVVVVSTPNMT   86 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~D~V~i~t~~~~   86 (376)
                      ||||||+|.||..+...+.+.   +++|+ ++|++++   +++++. +.|.  ..+++.+++++.. ..|+|++++|+..
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~---g~~v~-v~dr~~~---~~~~~~-~~g~--~~~~s~~~~~~~~~~advVi~~vp~~~   71 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLRED---GHEVV-GYDVNQE---AVDVAG-KLGI--TARHSLEELVSKLEAPRTIWVMVPAGE   71 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhC---CCEEE-EEECCHH---HHHHHH-HCCC--eecCCHHHHHHhCCCCCEEEEEecCch
Confidence            799999999999998888774   77877 7999987   444443 4564  4788999998753 3799999999997


Q ss_pred             cHHHHHHHHcC-C-CCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEE
Q 017143           87 HYQILMDIINH-P-KPHHVLVEKPLCTTVADCKKVVDAARKRPDILV  131 (376)
Q Consensus        87 h~~~~~~al~~-~-~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~  131 (376)
                      +.+-+..-+.. - .| .++++-- +.++.+.+++.+.+.+ .++.+
T Consensus        72 ~~~~v~~~i~~~l~~g-~ivid~s-t~~~~~~~~~~~~~~~-~g~~~  115 (299)
T PRK12490         72 VTESVIKDLYPLLSPG-DIVVDGG-NSRYKDDLRRAEELAE-RGIHY  115 (299)
T ss_pred             HHHHHHHHHhccCCCC-CEEEECC-CCCchhHHHHHHHHHH-cCCeE
Confidence            76554433221 0 33 5777653 4567788888888744 36544

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=98.35  E-value=2e-06  Score=78.94  Aligned_cols=101  Identities=21%  Similarity=0.224  Sum_probs=72.7

Q ss_pred             eEEEEeCChhhHHHHHHhhhhc-CCCcEEEEEeCCChhhHHHHHHHHHhcCCC---------------------CCcc--
Q 017143            8 KYGIIGMGMMGREHFINLHHLR-SQGVSVVCIADPHLQSRQQALKLANAFDWP---------------------LKVF--   63 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~-~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~---------------------~~~~--   63 (376)
                      ||||+|+|.+|+.+++.+.... .+++++++|.|....   +.....-+|+..                     ++++  
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~~~---~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~   77 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELADQ---ASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHS   77 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCCCH---HHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEc
Confidence            6999999999999999987652 257999999997654   222233333310                     1111  


Q ss_pred             CCHHHHhh-CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCC
Q 017143           64 PGHQELLD-SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTT  112 (376)
Q Consensus        64 ~~~~~~l~-~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~  112 (376)
                      .+.+++-. +.++|+|+.||+...+.+.+.+++++| .+.|++.+|+..+
T Consensus        78 ~~p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aG-a~~V~~SaP~~~d  126 (325)
T TIGR01532        78 PTPEALPWRALGVDLVLDCTGVYGNREQGERHIRAG-AKRVLFSHPGASD  126 (325)
T ss_pred             CChhhccccccCCCEEEEccchhccHHHHHHHHHcC-CeEEEecCCCcCC
Confidence            24444433 247999999999999999999999943 3999999997643

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=98.35  E-value=9.7e-06  Score=72.52  Aligned_cols=119  Identities=17%  Similarity=0.184  Sum_probs=90.7

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      .|||+||+|.||......|.+.   ++++. ++|++++   ++.++....|..  .+.+..++.+.  .|+|+.+.|+..
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~a---G~~v~-v~~r~~~---ka~~~~~~~Ga~--~a~s~~eaa~~--aDvVitmv~~~~   69 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKA---GHEVT-VYNRTPE---KAAELLAAAGAT--VAASPAEAAAE--ADVVITMLPDDA   69 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHC---CCEEE-EEeCChh---hhhHHHHHcCCc--ccCCHHHHHHh--CCEEEEecCCHH
Confidence            4899999999999998888884   78865 8999998   556677777854  88899899887  899999999999


Q ss_pred             cHHHHHHH----HcC-CCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeecccc
Q 017143           87 HYQILMDI----INH-PKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRY  139 (376)
Q Consensus        87 h~~~~~~a----l~~-~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~  139 (376)
                      |...+...    ++. +.| -++++-- +.+++.++++.+.++ ..|+.+.-+....-
T Consensus        70 ~V~~V~~g~~g~~~~~~~G-~i~IDmS-Tisp~~a~~~a~~~~-~~G~~~lDAPVsGg  124 (286)
T COG2084          70 AVRAVLFGENGLLEGLKPG-AIVIDMS-TISPETARELAAALA-AKGLEFLDAPVSGG  124 (286)
T ss_pred             HHHHHHhCccchhhcCCCC-CEEEECC-CCCHHHHHHHHHHHH-hcCCcEEecCccCC
Confidence            98877742    210 023 4666654 679999999999994 44766665554443

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=98.33  E-value=1.1e-05  Score=74.02  Aligned_cols=110  Identities=21%  Similarity=0.347  Sum_probs=78.0

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      +||+|||+|.+|..+...+.+.   +.+|+ ++|+++++   .+++. +.+.  ..++++++++++  .|+|++++|+..
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~---g~~v~-~~d~~~~~---~~~~~-~~g~--~~~~~~~e~~~~--~d~vi~~vp~~~   70 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKA---GYSLV-VYDRNPEA---VAEVI-AAGA--ETASTAKAVAEQ--CDVIITMLPNSP   70 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHC---CCeEE-EEcCCHHH---HHHHH-HCCC--eecCCHHHHHhc--CCEEEEeCCCHH
Confidence            5899999999999988888774   77876 68998874   33433 3454  367889999876  899999999988


Q ss_pred             cHHHHH-------HHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 017143           87 HYQILM-------DIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQV  133 (376)
Q Consensus        87 h~~~~~-------~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v  133 (376)
                      |...+.       ..++  .|+ ++++-- +.++..+++|.+.+.+ .++.+.-
T Consensus        71 ~~~~v~~~~~~~~~~~~--~g~-iiid~s-t~~~~~~~~l~~~~~~-~g~~~~d  119 (296)
T PRK11559         71 HVKEVALGENGIIEGAK--PGT-VVIDMS-SIAPLASREIAAALKA-KGIEMLD  119 (296)
T ss_pred             HHHHHHcCcchHhhcCC--CCc-EEEECC-CCCHHHHHHHHHHHHH-cCCcEEE
Confidence            766553       2334  443 455543 4567888888888844 3554433

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.33  E-value=5.2e-06  Score=74.90  Aligned_cols=100  Identities=21%  Similarity=0.225  Sum_probs=70.2

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ++||+|||+|.+|..++..+.+.. .....+.+++++++   .++++..++|+.  .+++.++++.+  .|+|++|+|+.
T Consensus         2 mm~I~iIG~G~mG~~la~~l~~~g-~~~~~v~v~~r~~~---~~~~~~~~~g~~--~~~~~~~~~~~--advVil~v~~~   73 (267)
T PRK11880          2 MKKIGFIGGGNMASAIIGGLLASG-VPAKDIIVSDPSPE---KRAALAEEYGVR--AATDNQEAAQE--ADVVVLAVKPQ   73 (267)
T ss_pred             CCEEEEEechHHHHHHHHHHHhCC-CCcceEEEEcCCHH---HHHHHHHhcCCe--ecCChHHHHhc--CCEEEEEcCHH
Confidence            468999999999999988887651 12234568899887   456666667764  67888888765  89999999999


Q ss_pred             ccHHHHHHHHcCCCCCeEEEecCCCCCHHH
Q 017143           86 THYQILMDIINHPKPHHVLVEKPLCTTVAD  115 (376)
Q Consensus        86 ~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e  115 (376)
                      .+.+++.++... .++.|+.--. +.+.++
T Consensus        74 ~~~~v~~~l~~~-~~~~vvs~~~-gi~~~~  101 (267)
T PRK11880         74 VMEEVLSELKGQ-LDKLVVSIAA-GVTLAR  101 (267)
T ss_pred             HHHHHHHHHHhh-cCCEEEEecC-CCCHHH
Confidence            888887776552 1344444333 334443

>PRK08291 ectoine utilization protein EutC; Validated

Probab=98.32  E-value=1.7e-06  Score=80.33  Aligned_cols=104  Identities=19%  Similarity=0.270  Sum_probs=77.6

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH----hcCCCCCccCCHHHHhhCCCCCEEEEe
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN----AFDWPLKVFPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~D~V~i~   81 (376)
                      ..+++|||+|.+|+.|+.++...  .+++-+.|++|+++   +++++++    ++++++..++++++++.+  .|+|+.+
T Consensus       132 ~~~v~IiGaG~~a~~~~~al~~~--~~~~~V~v~~R~~~---~a~~l~~~~~~~~g~~v~~~~d~~~al~~--aDiVi~a  204 (330)
T PRK08291        132 ASRAAVIGAGEQARLQLEALTLV--RPIREVRVWARDAA---KAEAYAADLRAELGIPVTVARDVHEAVAG--ADIIVTT  204 (330)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhc--CCCCEEEEEcCCHH---HHHHHHHHHhhccCceEEEeCCHHHHHcc--CCEEEEe
Confidence            36899999999999999998875  46888889999998   4555554    346654568999999976  7999999


Q ss_pred             CCCCccHHHHHH-HHcCCCCCeEEEecCCCCCHHHHHHHHHHH
Q 017143           82 TPNMTHYQILMD-IINHPKPHHVLVEKPLCTTVADCKKVVDAA  123 (376)
Q Consensus        82 t~~~~h~~~~~~-al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a  123 (376)
                      ||...  +++.. .++  .|.||.+   +..+....+++-...
T Consensus       205 T~s~~--p~i~~~~l~--~g~~v~~---vg~d~~~~rEld~~~  240 (330)
T PRK08291        205 TPSEE--PILKAEWLH--PGLHVTA---MGSDAEHKNEIAPAV  240 (330)
T ss_pred             eCCCC--cEecHHHcC--CCceEEe---eCCCCCCcccCCHHH
Confidence            98653  44433 478  8899987   656665556554444

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=98.32  E-value=5.8e-07  Score=67.45  Aligned_cols=90  Identities=17%  Similarity=0.270  Sum_probs=69.4

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      ++.+++|+|+|..|+..+....+.  .++.+++++|.++++..  +   .-.|+|  +|++.+++.+..++|+.+|++|.
T Consensus         2 k~~~v~ivGag~~G~a~~~~~~~~--~g~~i~~~~dv~~~~~G--~---~i~gip--V~~~~~~l~~~~~i~iaii~VP~   72 (96)
T PF02629_consen    2 KKTNVIIVGAGNLGRALLYNGFSM--RGFGIVAVFDVDPEKIG--K---EIGGIP--VYGSMDELEEFIEIDIAIITVPA   72 (96)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHH--HCECEEEEEEECTTTTT--S---EETTEE--EESSHHHHHHHCTTSEEEEES-H
T ss_pred             CCCeEEEECCCCcHHHHHHhHHHH--cCCCCEEEEEcCCCccC--c---EECCEE--eeccHHHhhhhhCCCEEEEEcCH
Confidence            578999999999998766555555  69999999999998421  1   123665  89999999887569999999999


Q ss_pred             CccHHHHHHHHcCCCCC-eEEE
Q 017143           85 MTHYQILMDIINHPKPH-HVLV  105 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~-~Vl~  105 (376)
                      ..-.+.+.++++  +|. .|++
T Consensus        73 ~~a~~~~~~~~~--~gIk~i~n   92 (96)
T PF02629_consen   73 EAAQEVADELVE--AGIKGIVN   92 (96)
T ss_dssp             HHHHHHHHHHHH--TT-SEEEE
T ss_pred             HHHHHHHHHHHH--cCCCEEEE
Confidence            999999999999  554 3443

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=98.31  E-value=1.2e-05  Score=74.13  Aligned_cols=122  Identities=15%  Similarity=0.186  Sum_probs=77.5

Q ss_pred             CCCCCceeEEEEeCChhhHHHHHHhhhhcCCC-cEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEE
Q 017143            1 MAANDTVKYGIIGMGMMGREHFINLHHLRSQG-VSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVV   79 (376)
Q Consensus         1 m~~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~-~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~   79 (376)
                      |+.+...+|+|||+|.+|......+...  .. .+ +.++|+++++.+.+    .+.|+....+.+.+++++.  .|+|+
T Consensus         1 ~~~~~~~~I~IIG~G~mG~sla~~l~~~--g~~~~-V~~~dr~~~~~~~a----~~~g~~~~~~~~~~~~~~~--aDvVi   71 (307)
T PRK07502          1 MSAPLFDRVALIGIGLIGSSLARAIRRL--GLAGE-IVGADRSAETRARA----RELGLGDRVTTSAAEAVKG--ADLVI   71 (307)
T ss_pred             CCccCCcEEEEEeeCHHHHHHHHHHHhc--CCCcE-EEEEECCHHHHHHH----HhCCCCceecCCHHHHhcC--CCEEE
Confidence            7777667999999999999988888765  22 24 45789988743332    3455432345678887765  89999


Q ss_pred             EeCCCCccHHHHHHH---HcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeecc
Q 017143           80 VSTPNMTHYQILMDI---INHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEY  137 (376)
Q Consensus        80 i~t~~~~h~~~~~~a---l~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~  137 (376)
                      +|+|+..+.+++.+.   ++  .|. +++.- .+.+..-.+++.+.. .. ++.++.++..
T Consensus        72 iavp~~~~~~v~~~l~~~l~--~~~-iv~dv-gs~k~~~~~~~~~~~-~~-~~~~v~~hPm  126 (307)
T PRK07502         72 LCVPVGASGAVAAEIAPHLK--PGA-IVTDV-GSVKASVIAAMAPHL-PE-GVHFIPGHPL  126 (307)
T ss_pred             ECCCHHHHHHHHHHHHhhCC--CCC-EEEeC-ccchHHHHHHHHHhC-CC-CCeEEeCCCC
Confidence            999998776665544   34  444 44442 233444444444443 22 5556655443

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=98.31  E-value=4.8e-06  Score=79.32  Aligned_cols=146  Identities=16%  Similarity=0.115  Sum_probs=98.0

Q ss_pred             EEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc---CCC-----CCccCCHHHHhhCCCCCEEEE
Q 017143            9 YGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF---DWP-----LKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         9 v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      |.|+|+|.+|+..+..|.+.  ..+.-+.|+|++.+   ++++++++.   .+.     +.-.++++++++.  .|+|+.
T Consensus         1 IlvlG~G~vG~~~~~~L~~~--~~~~~v~va~r~~~---~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~--~dvVin   73 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARR--GPFEEVTVADRNPE---KAERLAEKLLGDRVEAVQVDVNDPESLAELLRG--CDVVIN   73 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCT--TCE-EEEEEESSHH---HHHHHHT--TTTTEEEEE--TTTHHHHHHHHTT--SSEEEE
T ss_pred             CEEEcCcHHHHHHHHHHhcC--CCCCcEEEEECCHH---HHHHHHhhccccceeEEEEecCCHHHHHHHHhc--CCEEEE
Confidence            78999999999999988887  66634558999998   566666531   111     1112235667766  799999


Q ss_pred             eCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHc--CCCCce
Q 017143           81 STPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKS--GSIGQV  158 (376)
Q Consensus        81 ~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~--g~iG~i  158 (376)
                      |.|+..+..++..|++  +|.|.+-   .+.-.++..++-+.++ ++|+.+..+.-.---.....++.+++.  +.++++
T Consensus        74 ~~gp~~~~~v~~~~i~--~g~~yvD---~~~~~~~~~~l~~~a~-~~g~~~l~~~G~~PGl~~~~a~~~~~~~~~~~~~v  147 (386)
T PF03435_consen   74 CAGPFFGEPVARACIE--AGVHYVD---TSYVTEEMLALDEEAK-EAGVTALPGCGFDPGLSNLLARYAADELDAEGDEV  147 (386)
T ss_dssp             -SSGGGHHHHHHHHHH--HT-EEEE---SS-HHHHHHHCHHHHH-HTTSEEE-S-BTTTBHHHHHHHHHHHHHHHTTHEE
T ss_pred             CCccchhHHHHHHHHH--hCCCeec---cchhHHHHHHHHHHHH-hhCCEEEeCcccccchHHHHHHHHHHHhhhhcccc
Confidence            9999999999999999  8899666   2223677888888884 458888888776666655556666542  245588


Q ss_pred             EEEEEeecc
Q 017143          159 KMVAIREHR  167 (376)
Q Consensus       159 ~~~~~~~~~  167 (376)
                      ..+.++...
T Consensus       148 ~~~~~~~g~  156 (386)
T PF03435_consen  148 ESVDIYVGG  156 (386)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEEEcc
Confidence            888865443

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=98.31  E-value=1.4e-05  Score=77.43  Aligned_cols=119  Identities=12%  Similarity=0.191  Sum_probs=87.9

Q ss_pred             CCCCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh---cCCC-CCccCCHHHHhhC-CCC
Q 017143            1 MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA---FDWP-LKVFPGHQELLDS-GLC   75 (376)
Q Consensus         1 m~~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~l~~-~~~   75 (376)
                      |.+..+.+||+||+|.||......|.+.   +++|+ |+||+++   +++++.+.   .|.. +..+++.+++.+. ..+
T Consensus         1 ~~~~~~~~IG~IGLG~MG~~mA~nL~~~---G~~V~-V~NRt~~---k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~   73 (493)
T PLN02350          1 MASAALSRIGLAGLAVMGQNLALNIAEK---GFPIS-VYNRTTS---KVDETVERAKKEGNLPLYGFKDPEDFVLSIQKP   73 (493)
T ss_pred             CCCCCCCCEEEEeeHHHHHHHHHHHHhC---CCeEE-EECCCHH---HHHHHHHhhhhcCCcccccCCCHHHHHhcCCCC
Confidence            6666778999999999999999998875   88866 8999998   45555442   2421 2367899999975 358


Q ss_pred             CEEEEeCCCCccHHHHH----HHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEE
Q 017143           76 DVVVVSTPNMTHYQILM----DIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILV  131 (376)
Q Consensus        76 D~V~i~t~~~~h~~~~~----~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~  131 (376)
                      |+|+++.|+....+-+.    ..++  .| .|+++-- +.+..+.+++.+.++++ |+.+
T Consensus        74 dvIi~~v~~~~aV~~Vi~gl~~~l~--~G-~iiID~s-T~~~~~t~~~~~~l~~~-Gi~f  128 (493)
T PLN02350         74 RSVIILVKAGAPVDQTIKALSEYME--PG-DCIIDGG-NEWYENTERRIKEAAEK-GLLY  128 (493)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhhcC--CC-CEEEECC-CCCHHHHHHHHHHHHHc-CCeE
Confidence            99999999998876664    3445  44 5788763 55789999998888444 5543

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=98.29  E-value=1.9e-05  Score=68.78  Aligned_cols=144  Identities=17%  Similarity=0.198  Sum_probs=100.1

Q ss_pred             ceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH--HHHHHHH--HhcCCCCCccCCHHHHhhCCCCCEEEE
Q 017143            6 TVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSR--QQALKLA--NAFDWPLKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         6 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      +|||+|+|+ |.||+..++.+.+.  ++++|++.+++.+...  ..+.+++  ...+++  ++++.....  .++|+++-
T Consensus         2 ~iki~V~Ga~GRMG~~ii~~v~~~--~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~--v~~~~~~~~--~~~DV~ID   75 (266)
T COG0289           2 MIKVAVAGASGRMGRTLIRAVLEA--PDLELVAAFDRPGSLSLGSDAGELAGLGLLGVP--VTDDLLLVK--ADADVLID   75 (266)
T ss_pred             CceEEEEcCCChHHHHHHHHHhcC--CCceEEEEEecCCccccccchhhhccccccCce--eecchhhcc--cCCCEEEE
Confidence            699999997 99999999999888  8999999999987532  1122222  234554  667743333  45999999


Q ss_pred             eCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHH--cCCCC--
Q 017143           81 STPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVK--SGSIG--  156 (376)
Q Consensus        81 ~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~--~g~iG--  156 (376)
                      .|.|..-.+++..|++  +|+++.+=-- ..+.++.++|.+++ ++  +.+..+.|  |+=.+..+.++++  +..++  
T Consensus        76 FT~P~~~~~~l~~~~~--~~~~lVIGTT-Gf~~e~~~~l~~~a-~~--v~vv~a~N--fSiGvnll~~l~~~aak~l~~~  147 (266)
T COG0289          76 FTTPEATLENLEFALE--HGKPLVIGTT-GFTEEQLEKLREAA-EK--VPVVIAPN--FSLGVNLLFKLAEQAAKVLDDY  147 (266)
T ss_pred             CCCchhhHHHHHHHHH--cCCCeEEECC-CCCHHHHHHHHHHH-hh--CCEEEecc--chHHHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999  7776655443 45889999999999 54  44444433  4444444444442  33567  


Q ss_pred             ceEEEEE
Q 017143          157 QVKMVAI  163 (376)
Q Consensus       157 ~i~~~~~  163 (376)
                      +|--++.
T Consensus       148 DiEIiE~  154 (266)
T COG0289         148 DIEIIEA  154 (266)
T ss_pred             CEEehhh
Confidence            5555555

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.29  E-value=4.4e-06  Score=68.68  Aligned_cols=121  Identities=21%  Similarity=0.241  Sum_probs=78.6

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC--CCccCCHHHHhhCCCCCEEEEeCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP--LKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      ..+++|||+|.+|..++..+.+.   +...+.+++++++   ++++++++++..  ...+.+.++++++  +|+|++++|
T Consensus        19 ~~~i~iiG~G~~g~~~a~~l~~~---g~~~v~v~~r~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~Dvvi~~~~   90 (155)
T cd01065          19 GKKVLILGAGGAARAVAYALAEL---GAAKIVIVNRTLE---KAKALAERFGELGIAIAYLDLEELLAE--ADLIINTTP   90 (155)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC---CCCEEEEEcCCHH---HHHHHHHHHhhcccceeecchhhcccc--CCEEEeCcC
Confidence            57899999999999999998775   3555668899887   455555555531  0245677777654  899999999


Q ss_pred             CCcc----HHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCH
Q 017143           84 NMTH----YQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMP  141 (376)
Q Consensus        84 ~~~h----~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p  141 (376)
                      +..|    .......++  .|+ ++++=-  ...... ++.+.+++. |..+..|+..--..
T Consensus        91 ~~~~~~~~~~~~~~~~~--~~~-~v~D~~--~~~~~~-~l~~~~~~~-g~~~v~g~~~~~~q  145 (155)
T cd01065          91 VGMKPGDELPLPPSLLK--PGG-VVYDVV--YNPLET-PLLKEARAL-GAKTIDGLEMLVYQ  145 (155)
T ss_pred             CCCCCCCCCCCCHHHcC--CCC-EEEEcC--cCCCCC-HHHHHHHHC-CCceeCCHHHHHHH
Confidence            9987    223334566  554 444331  111212 777888444 77777665544333

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase

Probab=98.28  E-value=8.7e-05  Score=70.12  Aligned_cols=214  Identities=14%  Similarity=0.105  Sum_probs=137.1

Q ss_pred             ceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-----------------------CC
Q 017143            6 TVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-----------------------LK   61 (376)
Q Consensus         6 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-----------------------~~   61 (376)
                      +.||+|+|+ |.+|..-+.-+++++ ..|+++++...+.-  +.+.+.+++|.-.                       +.
T Consensus        57 ~KkI~ILGSTGSIGtqtLdVI~~~p-d~f~vvaLaag~Ni--~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~~~~~~  133 (454)
T PLN02696         57 PKPISLLGSTGSIGTQTLDIVAENP-DKFKVVALAAGSNV--TLLADQVRKFKPKLVAVRNESLVDELKEALADLDDKPE  133 (454)
T ss_pred             ccEEEEecCCcHhhHHHHHHHHhCc-cccEEEEEECCCCH--HHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCCCCCcE
Confidence            479999997 999999888888763 56999999876543  2344433333211                       11


Q ss_pred             cc---CCHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccc
Q 017143           62 VF---PGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYR  138 (376)
Q Consensus        62 ~~---~~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r  138 (376)
                      ++   +++.++++.+++|.|+.+..-..=......||+  +||+|.+.--= .=+.....|.+++ +++++.+..-    
T Consensus       134 vl~G~egl~~la~~~evDiVV~AIvG~aGL~pTl~AIk--aGK~VALANKE-SLV~aG~lI~~~a-k~~~~~IlPV----  205 (454)
T PLN02696        134 IIPGEEGIVEVARHPEAVTVVTGIVGCAGLKPTVAAIE--AGKDIALANKE-TLIAGGPFVLPLA-KKHGVKILPA----  205 (454)
T ss_pred             EEECHHHHHHHHcCCCCCEEEEeCccccchHHHHHHHH--CCCcEEEecHH-HHHhhHHHHHHHH-HHcCCeEeec----
Confidence            22   356677778889999998887666777799999  89998774331 1233344566777 4446554433    


Q ss_pred             cCHHHHHHHHHHHcCCCCceEEEEEeeccCCccc---------------ccCccccccccC--CcccccccccHHHHHHH
Q 017143          139 YMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLV---------------KVNDWNRFNENT--GGTLVEKCCHFFDLMRL  201 (376)
Q Consensus       139 ~~p~~~~~k~~i~~g~iG~i~~~~~~~~~~~~~~---------------~~~~w~~~~~~~--gG~l~d~g~H~ld~~~~  201 (376)
                       +.....+-|.++...-++|..+...-..+++..               .-++|..-++-+  .-.|++-|.-.+ =+.|
T Consensus       206 -DSEHsAIfQ~L~g~~~~~v~kiiLTASGGpFr~~~~e~l~~vT~~~ALkHP~W~MG~KITIDSATmmNKglEvI-EA~~  283 (454)
T PLN02696        206 -DSEHSAIFQCIQGLPEGGLRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLMNKGLEVI-EAHY  283 (454)
T ss_pred             -chhhHHHHHHccCCCccCccEEEEECCchhccCCCHHHHhCCCHHHHhhCCCCcCCCeeeeehHhhhhhhHHHH-HHHH
Confidence             444556667776544455777777655665543               135776554422  334555544333 3578


Q ss_pred             HhCCCCeEEEEecccccccCccccCCCCCcccccEEEEEEecCCcEE
Q 017143          202 FVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENGSRG  248 (376)
Q Consensus       202 l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~G~~~  248 (376)
                      |||-++.++.+..+.                ....+.+++|.||.+.
T Consensus       284 LF~~~~d~I~vvIHP----------------qSiIHsmVef~DGS~~  314 (454)
T PLN02696        284 LFGADYDDIDIVIHP----------------QSIIHSMVETQDSSVL  314 (454)
T ss_pred             HcCCCHHHeEEEECc----------------CCeeeEEEEEcCCcEE
Confidence            999777777776443                2458899999998664

>PRK07340 ornithine cyclodeaminase; Validated

Probab=98.24  E-value=3.6e-06  Score=77.07  Aligned_cols=90  Identities=16%  Similarity=0.126  Sum_probs=69.1

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc---CCCCCccCCHHHHhhCCCCCEEEEe
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF---DWPLKVFPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~D~V~i~   81 (376)
                      ...+++|||+|.+|+.|+.++...  .+++-+.|++++++   +++++++++   ++++. +++.++++.+  .|+|+.|
T Consensus       124 ~~~~v~IiGaG~qa~~~~~al~~~--~~~~~v~v~~r~~~---~a~~~a~~~~~~~~~~~-~~~~~~av~~--aDiVita  195 (304)
T PRK07340        124 PPGDLLLIGTGVQARAHLEAFAAG--LPVRRVWVRGRTAA---SAAAFCAHARALGPTAE-PLDGEAIPEA--VDLVVTA  195 (304)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHh--CCCCEEEEEcCCHH---HHHHHHHHHHhcCCeeE-ECCHHHHhhc--CCEEEEc
Confidence            346899999999999999999876  45677889999998   555666554   44422 6889999875  8999999


Q ss_pred             CCCCccHHHHHHHHcCCCCCeEEEe
Q 017143           82 TPNMTHYQILMDIINHPKPHHVLVE  106 (376)
Q Consensus        82 t~~~~h~~~~~~al~~~~g~~Vl~E  106 (376)
                      ||...  .++...++  .|.||.+=
T Consensus       196 T~s~~--Pl~~~~~~--~g~hi~~i  216 (304)
T PRK07340        196 TTSRT--PVYPEAAR--AGRLVVAV  216 (304)
T ss_pred             cCCCC--ceeCccCC--CCCEEEec
Confidence            99654  33444578  88999883

>PRK07680 late competence protein ComER; Validated

Probab=98.21  E-value=6.2e-05  Score=68.09  Aligned_cols=103  Identities=17%  Similarity=0.291  Sum_probs=69.5

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc-CCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF-DWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ++|+|||+|.+|...+..+.+...-...-+.+++++++   +++++++++ ++.  .+.+.++++..  .|+|++++|+.
T Consensus         1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~---~~~~~~~~~~g~~--~~~~~~~~~~~--aDiVilav~p~   73 (273)
T PRK07680          1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPA---KAYHIKERYPGIH--VAKTIEEVISQ--SDLIFICVKPL   73 (273)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHH---HHHHHHHHcCCeE--EECCHHHHHHh--CCEEEEecCHH
Confidence            37999999999999988887651001234668999887   455666665 553  67788888865  89999999988


Q ss_pred             ccHHHHHHH---HcCCCCCeEEEecCCCCCHHHHHHH
Q 017143           86 THYQILMDI---INHPKPHHVLVEKPLCTTVADCKKV  119 (376)
Q Consensus        86 ~h~~~~~~a---l~~~~g~~Vl~EKP~a~~~~e~~~l  119 (376)
                      ...+++.+.   ++  .++ +++-=.-+.+.++..++
T Consensus        74 ~~~~vl~~l~~~l~--~~~-~iis~~ag~~~~~L~~~  107 (273)
T PRK07680         74 DIYPLLQKLAPHLT--DEH-CLVSITSPISVEQLETL  107 (273)
T ss_pred             HHHHHHHHHHhhcC--CCC-EEEEECCCCCHHHHHHH
Confidence            776666553   33  343 44433334466655544

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.19  E-value=1.5e-05  Score=71.86  Aligned_cols=106  Identities=13%  Similarity=0.205  Sum_probs=74.8

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcC-CCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRS-QGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~-~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      +||+|||+|.||...+..+.+..- +..+ +.+++++++   +++++.+++|+.  .+++.++++.+  .|+|++|++|+
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~-I~v~~r~~~---~~~~l~~~~g~~--~~~~~~e~~~~--aDiIiLavkP~   74 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQ-IICSDLNVS---NLKNASDKYGIT--ITTNNNEVANS--ADILILSIKPD   74 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCce-EEEECCCHH---HHHHHHHhcCcE--EeCCcHHHHhh--CCEEEEEeChH
Confidence            589999999999998888876410 1224 457899887   566666667854  67788888875  79999999986


Q ss_pred             ccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHH
Q 017143           86 THYQILMDIINHPKPHHVLVEKPLCTTVADCKKVV  120 (376)
Q Consensus        86 ~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~  120 (376)
                      .-.+++......-.+.++++.==...+.++.+++.
T Consensus        75 ~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l  109 (272)
T PRK12491         75 LYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEF  109 (272)
T ss_pred             HHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhc
Confidence            55555544321002346777777788888877765

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=98.19  E-value=3.6e-05  Score=70.47  Aligned_cols=116  Identities=14%  Similarity=0.137  Sum_probs=82.1

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      .||+|||+|.||......+.+.   +.+| .++|++++   +.+++.+. |.  ....+..+++++  .|+|++|+|+..
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~---G~~V-~v~d~~~~---~~~~~~~~-g~--~~~~s~~~~~~~--aDvVi~~vp~~~   69 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQ---GHQL-QVFDVNPQ---AVDALVDK-GA--TPAASPAQAAAG--AEFVITMLPNGD   69 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHC---CCeE-EEEcCCHH---HHHHHHHc-CC--cccCCHHHHHhc--CCEEEEecCCHH
Confidence            3899999999999988888775   6676 47899988   44455443 54  367888888876  799999999987


Q ss_pred             cHHHHHH-------HHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeecccc
Q 017143           87 HYQILMD-------IINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRY  139 (376)
Q Consensus        87 h~~~~~~-------al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~  139 (376)
                      +.+.+..       .++  .| .++++.- +.++...+++.+...++ |+.+.-+.....
T Consensus        70 ~~~~vl~~~~~i~~~l~--~g-~lvid~s-T~~p~~~~~l~~~l~~~-g~~~ldapV~g~  124 (296)
T PRK15461         70 LVRSVLFGENGVCEGLS--RD-ALVIDMS-TIHPLQTDKLIADMQAK-GFSMMDVPVGRT  124 (296)
T ss_pred             HHHHHHcCcccHhhcCC--CC-CEEEECC-CCCHHHHHHHHHHHHHc-CCcEEEccCCCC
Confidence            6555532       123  33 4666664 56888999998888444 666554444443

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=98.19  E-value=2.8e-05  Score=71.23  Aligned_cols=110  Identities=18%  Similarity=0.215  Sum_probs=74.6

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhC-CCCCEEEEeCCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDS-GLCDVVVVSTPNM   85 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~D~V~i~t~~~   85 (376)
                      +||+|||+|.||..+...+.+.   +.+|+ ++|++++   +++++.+ .+..  .+.+.+++.+. ..+|+|++++|+.
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~~---g~~V~-~~dr~~~---~~~~l~~-~g~~--~~~s~~~~~~~~~~~dvIi~~vp~~   70 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAKR---GHDCV-GYDHDQD---AVKAMKE-DRTT--GVANLRELSQRLSAPRVVWVMVPHG   70 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHHC---CCEEE-EEECCHH---HHHHHHH-cCCc--ccCCHHHHHhhcCCCCEEEEEcCch
Confidence            3799999999999988888774   78876 5899988   4555554 3543  55778887653 3589999999998


Q ss_pred             ccHHHHHHH---HcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEE
Q 017143           86 THYQILMDI---INHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILV  131 (376)
Q Consensus        86 ~h~~~~~~a---l~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~  131 (376)
                      ...+++.+.   ++  .| .++++-. .....+..++.+.+++ .|+.+
T Consensus        71 ~~~~v~~~l~~~l~--~g-~ivid~s-t~~~~~t~~~~~~~~~-~g~~~  114 (298)
T TIGR00872        71 IVDAVLEELAPTLE--KG-DIVIDGG-NSYYKDSLRRYKLLKE-KGIHL  114 (298)
T ss_pred             HHHHHHHHHHhhCC--CC-CEEEECC-CCCcccHHHHHHHHHh-cCCeE
Confidence            545554433   34  44 5667622 2344667777777734 36543

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=98.18  E-value=3.7e-05  Score=70.54  Aligned_cols=113  Identities=18%  Similarity=0.146  Sum_probs=79.9

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCC-CCCEEEEeCCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSG-LCDVVVVSTPNM   85 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~D~V~i~t~~~   85 (376)
                      +||||||+|.||......|.+.   +.+|+ ++|++++   +++++. +.|.  ..+++.+++.+.. ++|+|+++.|+.
T Consensus         1 m~Ig~IGlG~MG~~mA~~L~~~---g~~v~-v~dr~~~---~~~~~~-~~g~--~~~~~~~e~~~~~~~~dvvi~~v~~~   70 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRLLRG---GHEVV-GYDRNPE---AVEALA-EEGA--TGADSLEELVAKLPAPRVVWLMVPAG   70 (301)
T ss_pred             CEEEEEcccHHHHHHHHHHHHC---CCeEE-EEECCHH---HHHHHH-HCCC--eecCCHHHHHhhcCCCCEEEEEecCC
Confidence            3899999999999998888774   77765 6899987   444543 3565  4788999998752 479999999998


Q ss_pred             ccHHHHH-H---HHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 017143           86 THYQILM-D---IINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVG  134 (376)
Q Consensus        86 ~h~~~~~-~---al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~  134 (376)
                      .+..-+. .   .++  .| +++++-- +.+....+++.+.++++ |+.+.-+
T Consensus        71 ~~~~~v~~~l~~~l~--~g-~ivid~s-t~~~~~~~~~~~~~~~~-g~~~~da  118 (301)
T PRK09599         71 EITDATIDELAPLLS--PG-DIVIDGG-NSYYKDDIRRAELLAEK-GIHFVDV  118 (301)
T ss_pred             cHHHHHHHHHHhhCC--CC-CEEEeCC-CCChhHHHHHHHHHHHc-CCEEEeC
Confidence            5544333 2   234  34 5666653 45777888888888444 7665543

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=98.16  E-value=0.00016  Score=64.09  Aligned_cols=146  Identities=16%  Similarity=0.204  Sum_probs=97.3

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ++||+|||+|.||...+..+.+...-..+-+.|++++++   +.+.++.+||+.  .+++.+++...  .|+|+++..|+
T Consensus         1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e---~~~~l~~~~g~~--~~~~~~~~~~~--advv~LavKPq   73 (266)
T COG0345           1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEE---KRAALAAEYGVV--TTTDNQEAVEE--ADVVFLAVKPQ   73 (266)
T ss_pred             CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHH---HHHHHHHHcCCc--ccCcHHHHHhh--CCEEEEEeChH
Confidence            468999999999999999888862112345668999998   555788899976  47888888876  79999999998


Q ss_pred             ccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHH-----------HHHhCCCeEEEEeeccccCHHH-HHHHHHHHcC
Q 017143           86 THYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVD-----------AARKRPDILVQVGLEYRYMPPV-AKLIQIVKSG  153 (376)
Q Consensus        86 ~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~-----------~a~~~~~~~~~v~~~~r~~p~~-~~~k~~i~~g  153 (376)
                      ...+++.+.-....++.|+. --...+.+..+++..           .+.-..|+. .+..+...++.. ..+.++++  
T Consensus        74 ~~~~vl~~l~~~~~~~lvIS-iaAGv~~~~l~~~l~~~~vvR~MPNt~a~vg~g~t-~i~~~~~~~~~~~~~v~~l~~--  149 (266)
T COG0345          74 DLEEVLSKLKPLTKDKLVIS-IAAGVSIETLERLLGGLRVVRVMPNTPALVGAGVT-AISANANVSEEDKAFVEALLS--  149 (266)
T ss_pred             hHHHHHHHhhcccCCCEEEE-EeCCCCHHHHHHHcCCCceEEeCCChHHHHcCcce-eeecCccCCHHHHHHHHHHHH--
Confidence            77777666531114555544 334578888877774           110111222 222233334433 36777777  


Q ss_pred             CCCceEEEE
Q 017143          154 SIGQVKMVA  162 (376)
Q Consensus       154 ~iG~i~~~~  162 (376)
                      .+|+++.+.
T Consensus       150 ~~G~v~~v~  158 (266)
T COG0345         150 AVGKVVEVE  158 (266)
T ss_pred             hcCCeEEec
Confidence            489998876

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=98.15  E-value=2.5e-05  Score=68.96  Aligned_cols=114  Identities=19%  Similarity=0.233  Sum_probs=86.2

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      +-+||+||+|.||...+..|.+.   +++|+ |+|++.+   +++.|.+. |.  ++.++..|+.++  .|.|+.+.|+.
T Consensus        35 ~~~iGFIGLG~MG~~M~~nLik~---G~kVt-V~dr~~~---k~~~f~~~-Ga--~v~~sPaeVae~--sDvvitmv~~~  102 (327)
T KOG0409|consen   35 KTRIGFIGLGNMGSAMVSNLIKA---GYKVT-VYDRTKD---KCKEFQEA-GA--RVANSPAEVAED--SDVVITMVPNP  102 (327)
T ss_pred             cceeeEEeeccchHHHHHHHHHc---CCEEE-EEeCcHH---HHHHHHHh-ch--hhhCCHHHHHhh--cCEEEEEcCCh
Confidence            57999999999999999888885   89977 8999888   78887754 53  589999999988  89999999999


Q ss_pred             ccHHHHHH-------HHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEee
Q 017143           86 THYQILMD-------IINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGL  135 (376)
Q Consensus        86 ~h~~~~~~-------al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~  135 (376)
                      .|..-+..       .++  .|+...++-. +.++.-.++|.+++..+ +..+.-+.
T Consensus       103 ~~v~~v~~g~~Gvl~g~~--~g~~~~vDmS-Tidp~~s~ei~~~i~~~-~~~~vDAP  155 (327)
T KOG0409|consen  103 KDVKDVLLGKSGVLSGIR--PGKKATVDMS-TIDPDTSLEIAKAISNK-GGRFVDAP  155 (327)
T ss_pred             HhhHHHhcCCCcceeecc--CCCceEEecc-ccCHHHHHHHHHHHHhC-CCeEEecc
Confidence            98776553       333  3344434433 45788889999888433 54544443

>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]

Probab=98.15  E-value=6.2e-05  Score=65.60  Aligned_cols=147  Identities=13%  Similarity=0.106  Sum_probs=107.9

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC---CCccCCHHHHhhCCCCCEEEEeC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP---LKVFPGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~D~V~i~t   82 (376)
                      .+++.+.|+|.+|...++.+.+.  ++++||++++++.++  +.+++++--|.+   +...++++..++...-++++...
T Consensus         2 ~~~vvqyGtG~vGv~air~l~ak--pe~elvgawv~s~ak--~Gkdlgelagl~dlgV~a~~~~~avlAtl~~~~~y~~~   77 (350)
T COG3804           2 SLRVVQYGTGSVGVAAIRGLLAK--PELELVGAWVHSAAK--SGKDLGELAGLPDLGVIATNSIDAVLATLADAVIYAPL   77 (350)
T ss_pred             CceeEEeccchHHHHHHHHHHcC--CCCceEEEEecCccc--ccccHHHhcCCCCceeEeecccccceeccccceeeecc
Confidence            38999999999999999998887  899999999999985  334444433333   34567788777764334455444


Q ss_pred             CCCccHHHHHHHHcCCCCCeEEEe-----cCCCCCHHHHHHHHHHHHhCCCe-EEEEeeccccCH-HHHHHHHHHHcCCC
Q 017143           83 PNMTHYQILMDIINHPKPHHVLVE-----KPLCTTVADCKKVVDAARKRPDI-LVQVGLEYRYMP-PVAKLIQIVKSGSI  155 (376)
Q Consensus        83 ~~~~h~~~~~~al~~~~g~~Vl~E-----KP~a~~~~e~~~l~~~a~~~~~~-~~~v~~~~r~~p-~~~~~k~~i~~g~i  155 (376)
                      -+ . ++-..++|+  +|++|.|-     -|-...++.+.+..+.|.+. |. .+...   --+| ....+--++-+|-.
T Consensus        78 ~~-~-~~~y~rlL~--aGiNVv~~g~~l~yPw~~~PelaeKpl~lAara-Gn~Tl~gt---GI~pGF~~dllpmlLsgpc  149 (350)
T COG3804          78 LP-S-VDEYARLLR--AGINVVTPGPVLQYPWFYPPELAEKPLELAARA-GNATLHGT---GIGPGFVTDLLPMLLSGPC  149 (350)
T ss_pred             cc-h-HHHHHHHHH--cCCceeccCccccCCCcCChHHhhchHHHHHhc-CCceEEec---ccCccHHHHHHHHHHcccc
Confidence            44 3 788889999  89999998     67777899999999999554 54 33322   2234 46666677788888


Q ss_pred             CceEEEEEe
Q 017143          156 GQVKMVAIR  164 (376)
Q Consensus       156 G~i~~~~~~  164 (376)
                      -+|.+++..
T Consensus       150 teve~ir~~  158 (350)
T COG3804         150 TEVEFIRSE  158 (350)
T ss_pred             cceEEEeee
Confidence            888888875

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.14  E-value=2.3e-05  Score=71.00  Aligned_cols=105  Identities=16%  Similarity=0.278  Sum_probs=70.5

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhc-CCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLR-SQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~-~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      .||+|||+|.+|...+..+.+.. -+..+++. ++++++.  +.+.+..+++. ...+.+.++++..  .|+|++|+|++
T Consensus         2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~-~~r~~~~--~~~~l~~~~~~-~~~~~~~~e~~~~--aDvVilavpp~   75 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLLETEVATPEEIIL-YSSSKNE--HFNQLYDKYPT-VELADNEAEIFTK--CDHSFICVPPL   75 (277)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcccEEE-EeCCcHH--HHHHHHHHcCC-eEEeCCHHHHHhh--CCEEEEecCHH
Confidence            57999999999999888887651 01246664 4554321  34455555532 2356788888765  89999999998


Q ss_pred             ccHHHHHHH---HcCCCCCeEEEecCCCCCHHHHHHHH
Q 017143           86 THYQILMDI---INHPKPHHVLVEKPLCTTVADCKKVV  120 (376)
Q Consensus        86 ~h~~~~~~a---l~~~~g~~Vl~EKP~a~~~~e~~~l~  120 (376)
                      .+.+++.+.   ++  .+++|+ -.....+.++.+++.
T Consensus        76 ~~~~vl~~l~~~l~--~~~~iv-S~~aGi~~~~l~~~~  110 (277)
T PRK06928         76 AVLPLLKDCAPVLT--PDRHVV-SIAAGVSLDDLLEIT  110 (277)
T ss_pred             HHHHHHHHHHhhcC--CCCEEE-EECCCCCHHHHHHHc
Confidence            888877655   44  455544 466677888766644

>PRK06813 homoserine dehydrogenase; Validated

Probab=98.13  E-value=5.8e-05  Score=69.89  Aligned_cols=149  Identities=15%  Similarity=0.149  Sum_probs=91.3

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhc-------CCCcEEEEEeCCChhhHHH----HHHHHH-h---cCCCCCccCCHHHHh
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLR-------SQGVSVVCIADPHLQSRQQ----ALKLAN-A---FDWPLKVFPGHQELL   70 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~-------~~~~~~~~v~d~~~~~~~~----~~~~~~-~---~~~~~~~~~~~~~~l   70 (376)
                      +++|+|+|+|.+|+..+..+.+..       +-+++|++|++++......    ..++.+ .   ..+......+.++++
T Consensus         2 ~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~~~   81 (346)
T PRK06813          2 KIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEERA   81 (346)
T ss_pred             eeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHHHh
Confidence            599999999999997777764432       2478999999875542110    001110 0   011000112344445


Q ss_pred             hCC-CCCEEEEeCCCC-----ccHHHHHHHHcCCCCCeEEEe--cCCCCCHHHHHHHHHHHHhCCCeEEE-EeeccccCH
Q 017143           71 DSG-LCDVVVVSTPNM-----THYQILMDIINHPKPHHVLVE--KPLCTTVADCKKVVDAARKRPDILVQ-VGLEYRYMP  141 (376)
Q Consensus        71 ~~~-~~D~V~i~t~~~-----~h~~~~~~al~~~~g~~Vl~E--KP~a~~~~e~~~l~~~a~~~~~~~~~-v~~~~r~~p  141 (376)
                      .++ ++|+|+=+||+.     .-.+++.+||+  +|+||..-  +|++..   ..+|.++|++. |+.+. .+...---|
T Consensus        82 ~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~--~G~hVVTANK~~la~~---~~eL~~lA~~~-g~~~~yEasVggGiP  155 (346)
T PRK06813         82 TDNISGTVLVESTVTNLKDGNPGKQYIKQAIE--KKMDIVAISKGALVTN---WREINEAAKIA-NVRIRYSGATAAALP  155 (346)
T ss_pred             cCCCCCCEEEECCCCccCCchHHHHHHHHHHH--CCCeEEcCCcHHHhcc---HHHHHHHHHHc-CCeEEEeeeeeeccc
Confidence            444 689999999875     34677899999  99999774  355544   47788888544 55544 343445678


Q ss_pred             HHHHHHHHHHcCCCCceEEEEE
Q 017143          142 PVAKLIQIVKSGSIGQVKMVAI  163 (376)
Q Consensus       142 ~~~~~k~~i~~g~iG~i~~~~~  163 (376)
                      .+..++..+...   +|..++.
T Consensus       156 iI~~l~~~~~g~---~I~~i~G  174 (346)
T PRK06813        156 TLDIGQFSLAGC---HIEKIEG  174 (346)
T ss_pred             hHHHHhhhcccC---cEEEEEE
Confidence            888885544433   5555554

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=98.11  E-value=1.2e-05  Score=74.55  Aligned_cols=89  Identities=21%  Similarity=0.290  Sum_probs=69.0

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh----cCCCCCccCCHHHHhhCCCCCEEEEe
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA----FDWPLKVFPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~D~V~i~   81 (376)
                      .-+++|||+|..|+.|+.++...  .+++-+.|++|+++   ++++++++    +++++..++++++.+.+  .|+|+.|
T Consensus       129 ~~~v~iiGaG~qA~~~~~al~~~--~~i~~v~V~~R~~~---~a~~~a~~~~~~~g~~v~~~~~~~~av~~--aDiVvta  201 (326)
T TIGR02992       129 SSVVAIFGAGMQARLQLEALTLV--RDIRSARIWARDSA---KAEALALQLSSLLGIDVTAATDPRAAMSG--ADIIVTT  201 (326)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHh--CCccEEEEECCCHH---HHHHHHHHHHhhcCceEEEeCCHHHHhcc--CCEEEEe
Confidence            46899999999999999999876  57888889999998   45555543    46654457899999875  8999999


Q ss_pred             CCCCccHHHH-HHHHcCCCCCeEEE
Q 017143           82 TPNMTHYQIL-MDIINHPKPHHVLV  105 (376)
Q Consensus        82 t~~~~h~~~~-~~al~~~~g~~Vl~  105 (376)
                      ||...  +++ .+.++  .|.||..
T Consensus       202 T~s~~--p~i~~~~l~--~g~~i~~  222 (326)
T TIGR02992       202 TPSET--PILHAEWLE--PGQHVTA  222 (326)
T ss_pred             cCCCC--cEecHHHcC--CCcEEEe
Confidence            98743  333 35688  8899884

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=98.10  E-value=6.6e-05  Score=68.67  Aligned_cols=143  Identities=15%  Similarity=0.105  Sum_probs=97.8

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      -+|+|+|+|..|...++-.+.+   +.++++ +|+++++++.++++.+.+.+..+ -.+.-+.+.. .+|+++.+.+ ..
T Consensus       168 ~~V~I~G~GGlGh~avQ~Aka~---ga~Via-~~~~~~K~e~a~~lGAd~~i~~~-~~~~~~~~~~-~~d~ii~tv~-~~  240 (339)
T COG1064         168 KWVAVVGAGGLGHMAVQYAKAM---GAEVIA-ITRSEEKLELAKKLGADHVINSS-DSDALEAVKE-IADAIIDTVG-PA  240 (339)
T ss_pred             CEEEEECCcHHHHHHHHHHHHc---CCeEEE-EeCChHHHHHHHHhCCcEEEEcC-CchhhHHhHh-hCcEEEECCC-hh
Confidence            5899999998777666665655   699886 57888866655655443333211 1222233332 2999999999 87


Q ss_pred             cHHHHHHHHcCCCCCeEEEecCC----C-------------------CCHHHHHHHHHHHHhCCCeEEEEeeccccCHHH
Q 017143           87 HYQILMDIINHPKPHHVLVEKPL----C-------------------TTVADCKKVVDAARKRPDILVQVGLEYRYMPPV  143 (376)
Q Consensus        87 h~~~~~~al~~~~g~~Vl~EKP~----a-------------------~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~  143 (376)
                      -.+..+++|+.+ |..|++=-|.    .                   -+..|.+++++.+ .++++.-.+......+...
T Consensus       241 ~~~~~l~~l~~~-G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS~~g~~~d~~e~l~f~-~~g~Ikp~i~e~~~l~~in  318 (339)
T COG1064         241 TLEPSLKALRRG-GTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGTRADLEEALDFA-AEGKIKPEILETIPLDEIN  318 (339)
T ss_pred             hHHHHHHHHhcC-CEEEEECCCCCcccCCCCHHHhhhcCeEEEEEecCCHHHHHHHHHHH-HhCCceeeEEeeECHHHHH
Confidence            888999999864 8888874442    1                   1458999999999 6678888887667777766


Q ss_pred             HHHHHHHHcCCCCce
Q 017143          144 AKLIQIVKSGSIGQV  158 (376)
Q Consensus       144 ~~~k~~i~~g~iG~i  158 (376)
                      ....++.+....|++
T Consensus       319 ~A~~~m~~g~v~gR~  333 (339)
T COG1064         319 EAYERMEKGKVRGRA  333 (339)
T ss_pred             HHHHHHHcCCeeeEE
Confidence            666666554445555

>PRK06141 ornithine cyclodeaminase; Validated

Probab=98.09  E-value=1.4e-05  Score=73.65  Aligned_cols=109  Identities=14%  Similarity=0.178  Sum_probs=74.0

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc---CCCCCccCCHHHHhhCCCCCEEEEe
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF---DWPLKVFPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~D~V~i~   81 (376)
                      ...+|+|||+|.+|+.|+..+...  .+++-+.|++|+++   +++++++++   ++++..+++.++++.+  .|+|+.+
T Consensus       124 ~~~~v~iiG~G~~a~~~~~al~~~--~~~~~V~V~~Rs~~---~a~~~a~~~~~~g~~~~~~~~~~~av~~--aDIVi~a  196 (314)
T PRK06141        124 DASRLLVVGTGRLASLLALAHASV--RPIKQVRVWGRDPA---KAEALAAELRAQGFDAEVVTDLEAAVRQ--ADIISCA  196 (314)
T ss_pred             CCceEEEECCcHHHHHHHHHHHhc--CCCCEEEEEcCCHH---HHHHHHHHHHhcCCceEEeCCHHHHHhc--CCEEEEe
Confidence            346899999999999999887775  34565668999988   555666553   4334467899988876  8999888


Q ss_pred             CCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhC
Q 017143           82 TPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKR  126 (376)
Q Consensus        82 t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~  126 (376)
                      |+.. +.-+-.+.++  .|.||.+=-   .+....+|+-....++
T Consensus       197 T~s~-~pvl~~~~l~--~g~~i~~ig---~~~~~~~El~~~~~~~  235 (314)
T PRK06141        197 TLST-EPLVRGEWLK--PGTHLDLVG---NFTPDMRECDDEAIRR  235 (314)
T ss_pred             eCCC-CCEecHHHcC--CCCEEEeeC---CCCcccccCCHHHHhc
Confidence            8765 3222335678  788887632   3333444444444233

>PLN02700 homoserine dehydrogenase family protein

Probab=98.09  E-value=0.0002  Score=66.77  Aligned_cols=149  Identities=19%  Similarity=0.214  Sum_probs=94.2

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhhc------CCCcEEEEEeCCChhhH-----------HHHHH-H---HHhcCCCCCc
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHLR------SQGVSVVCIADPHLQSR-----------QQALK-L---ANAFDWPLKV   62 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~~------~~~~~~~~v~d~~~~~~-----------~~~~~-~---~~~~~~~~~~   62 (376)
                      |++++|+|||+|.+|+..+..+.+.+      +-+++|++|++....-.           +...+ +   .+...+.  .
T Consensus         1 m~~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s~~~l~~~~~~~~Gldl~~~~~~~~~~~~~~~~~--~   78 (377)
T PLN02700          1 MKKIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDSKSLVLAEDVLNEELDDALLSEVCLAKSKGSPLS--A   78 (377)
T ss_pred             CcEEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECCCceEECCccccCCCCHHHHHHHHHhhccccchh--h
Confidence            45799999999999987777654432      23578899987532111           01111 1   1111111  1


Q ss_pred             c-------------------CCHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEe--cCCCCCHHHHHHHHH
Q 017143           63 F-------------------PGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVE--KPLCTTVADCKKVVD  121 (376)
Q Consensus        63 ~-------------------~~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~E--KP~a~~~~e~~~l~~  121 (376)
                      +                   .+..+.+.+...++++-||+...-.++..++|+  +|+||..-  +|++.+.++..+|. 
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ViVD~T~s~~~~~~y~~aL~--~G~hVVTaNK~~~a~~~~~~~~la-  155 (377)
T PLN02700         79 LGALAGGCQVFNNSELSRKVIDIATLLGKSTGLVVVDCSASMETIGALNEAVD--LGCCIVLANKKPLTSTLEDYDKLA-  155 (377)
T ss_pred             hhhccccccccccccccchhhhHHHHhhccCCCEEEECCCChHHHHHHHHHHH--CCCeEEcCCchHhccCHHHHHHHH-
Confidence            1                   223344433346899999998776889999999  99999874  57777777766655 


Q ss_pred             HHHhCCCeEE-EEeeccccCHHHHHHHHHHHcCCCCceEEEEE
Q 017143          122 AARKRPDILV-QVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAI  163 (376)
Q Consensus       122 ~a~~~~~~~~-~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~~~  163 (376)
                         ++ ++.+ +-+-..---|.+..+++++.+|.  +|..++.
T Consensus       156 ---~~-~~~~~yEatVgaGlPiI~tl~~ll~sGd--~I~~I~G  192 (377)
T PLN02700        156 ---AH-PRRIRHESTVGAGLPVIASLNRILSSGD--PVHRIVG  192 (377)
T ss_pred             ---Hc-CCeEEEEeeeeeccchHHHHHHHhhccC--CEEEEEE
Confidence               33 4443 33444446799999999997643  5666655

>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=98.06  E-value=0.00021  Score=61.27  Aligned_cols=151  Identities=18%  Similarity=0.253  Sum_probs=105.3

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhhc------CCCcEEEEEeCCCh---------hhH--HHHHHHHHhcCCCCCccCCH
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHLR------SQGVSVVCIADPHL---------QSR--QQALKLANAFDWPLKVFPGH   66 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~~------~~~~~~~~v~d~~~---------~~~--~~~~~~~~~~~~~~~~~~~~   66 (376)
                      |+++.|+++|||.+|+..+..+...+      .-.+.++++||...         ..+  +...++..+-+-   .+ ++
T Consensus         1 ~k~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~~~~skD~~p~nl~sewk~~L~~st~~---al-sL   76 (364)
T KOG0455|consen    1 MKKVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSESLVASKDVLPENLNSEWKSELIKSTGS---AL-SL   76 (364)
T ss_pred             CccccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecccccccccccChhhhchHHHHHHHHhcCC---cc-cH
Confidence            45799999999999986655544332      23689999997522         111  112223333231   22 25


Q ss_pred             HHHhh----CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEE--ecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccC
Q 017143           67 QELLD----SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLV--EKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYM  140 (376)
Q Consensus        67 ~~~l~----~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~--EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~  140 (376)
                      +++++    .+.+=+++-+|....-.++-.++++  .|+.+..  -||++.+.+..+.|.... +.++.....+-.----
T Consensus        77 daLia~L~~sp~p~ilVDntaS~~ia~~y~Kfv~--~gi~IatpNKKafss~l~~y~~l~~~~-~s~~fi~HEatVGAGL  153 (364)
T KOG0455|consen   77 DALIAKLLGSPTPLILVDNTASMEIAEIYMKFVD--LGICIATPNKKAFSSTLEHYDKLALHS-KSPRFIRHEATVGAGL  153 (364)
T ss_pred             HHHHHHHcCCCCceEEEecccHHHHHHHHHHHHh--cCceEecCCcccccccHHHHHHHHhcC-CCCceEEeeccccCCc
Confidence            65554    4777888888888888899999999  7777765  699999999999999888 5555555555555668


Q ss_pred             HHHHHHHHHHHcCCCCceEEEEE
Q 017143          141 PPVAKLIQIVKSGSIGQVKMVAI  163 (376)
Q Consensus       141 p~~~~~k~~i~~g~iG~i~~~~~  163 (376)
                      |....++++|..|.  +|..+..
T Consensus       154 PiIs~L~eiI~tGD--ev~kIeG  174 (364)
T KOG0455|consen  154 PIISSLNEIISTGD--EVHKIEG  174 (364)
T ss_pred             hhHHHHHHHHhcCC--ceeEEEE
Confidence            99999999999865  5555554

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.05  E-value=3.8e-05  Score=63.32  Aligned_cols=89  Identities=18%  Similarity=0.282  Sum_probs=60.4

Q ss_pred             eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcC-------C----CCCccCCHHHHhhCCCCC
Q 017143            8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFD-------W----PLKVFPGHQELLDSGLCD   76 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~-------~----~~~~~~~~~~~l~~~~~D   76 (376)
                      ||+|||+|.+|......+...   +.+ |-++.++++.   .+.+.+...       +    .+..++|+++++++  .|
T Consensus         1 KI~ViGaG~~G~AlA~~la~~---g~~-V~l~~~~~~~---~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~--ad   71 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADN---GHE-VTLWGRDEEQ---IEEINETRQNPKYLPGIKLPENIKATTDLEEALED--AD   71 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHC---TEE-EEEETSCHHH---HHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT---S
T ss_pred             CEEEECcCHHHHHHHHHHHHc---CCE-EEEEeccHHH---HHHHHHhCCCCCCCCCcccCcccccccCHHHHhCc--cc
Confidence            799999999999877777765   566 4489999874   444433211       1    13467899999986  79


Q ss_pred             EEEEeCCCCccHHHHHHHHcCC-CCCeEEE
Q 017143           77 VVVVSTPNMTHYQILMDIINHP-KPHHVLV  105 (376)
Q Consensus        77 ~V~i~t~~~~h~~~~~~al~~~-~g~~Vl~  105 (376)
                      +|++++|...|.+++.+....- .+..+++
T Consensus        72 ~IiiavPs~~~~~~~~~l~~~l~~~~~ii~  101 (157)
T PF01210_consen   72 IIIIAVPSQAHREVLEQLAPYLKKGQIIIS  101 (157)
T ss_dssp             EEEE-S-GGGHHHHHHHHTTTSHTT-EEEE
T ss_pred             EEEecccHHHHHHHHHHHhhccCCCCEEEE
Confidence            9999999999998888764311 4444443

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.04  E-value=2.6e-05  Score=64.56  Aligned_cols=101  Identities=20%  Similarity=0.201  Sum_probs=77.2

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCC---CCCEEEEe
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSG---LCDVVVVS   81 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~D~V~i~   81 (376)
                      +|.||+|||.|++|...+..+.++. ..++.-+.+..|+.+..  ..-+.++|++ ......+-+|..|   ++|+|+-+
T Consensus         3 sk~kvaiigsgni~tdlm~k~lr~g-~~le~~~mvgidp~sdg--laraarlgv~-tt~egv~~ll~~p~~~di~lvfda   78 (310)
T COG4569           3 SKRKVAIIGSGNIGTDLMIKILRHG-QHLEMAVMVGIDPQSDG--LARAARLGVA-TTHEGVIGLLNMPEFADIDLVFDA   78 (310)
T ss_pred             CcceEEEEccCcccHHHHHHHHhcC-CcccceeEEccCCCccH--HHHHHhcCCc-chhhHHHHHHhCCCCCCcceEEec
Confidence            4899999999999987555444431 67777777878777533  3335678987 6667788888864   67899999


Q ss_pred             CCCCccHHHHHHHHcCCCCCeEEEecCCCC
Q 017143           82 TPNMTHYQILMDIINHPKPHHVLVEKPLCT  111 (376)
Q Consensus        82 t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~  111 (376)
                      |....|...+-+..+  .|...+-=.|.+.
T Consensus        79 tsa~~h~~~a~~~ae--~gi~~idltpaai  106 (310)
T COG4569          79 TSAGAHVKNAAALAE--AGIRLIDLTPAAI  106 (310)
T ss_pred             cccchhhcchHhHHh--cCCceeecchhcc
Confidence            999999999999999  8888776666554

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=97.99  E-value=9.9e-05  Score=67.44  Aligned_cols=109  Identities=20%  Similarity=0.270  Sum_probs=76.1

Q ss_pred             eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCcc
Q 017143            8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMTH   87 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~h   87 (376)
                      ||+|||+|.+|......+.+.   +++|+ ++|+++++   ++++. +.|.  ..+++.++++++  .|+|++|.|+..+
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~---G~~V~-~~dr~~~~---~~~~~-~~g~--~~~~~~~~~~~~--aDivi~~vp~~~~   68 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKA---GYQLH-VTTIGPEV---ADELL-AAGA--VTAETARQVTEQ--ADVIFTMVPDSPQ   68 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHC---CCeEE-EEcCCHHH---HHHHH-HCCC--cccCCHHHHHhc--CCEEEEecCCHHH
Confidence            699999999999988888775   67876 68999874   44443 3354  356788888876  8999999998766


Q ss_pred             HHHHH-------HHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 017143           88 YQILM-------DIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQV  133 (376)
Q Consensus        88 ~~~~~-------~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v  133 (376)
                      ...+.       ..++  .| .+++.-- +.++...+++.+.++++ ++.+..
T Consensus        69 ~~~v~~~~~~~~~~~~--~g-~iivd~s-t~~~~~~~~l~~~l~~~-g~~~~~  116 (291)
T TIGR01505        69 VEEVAFGENGIIEGAK--PG-KTLVDMS-SISPIESKRFAKAVKEK-GIDYLD  116 (291)
T ss_pred             HHHHHcCcchHhhcCC--CC-CEEEECC-CCCHHHHHHHHHHHHHc-CCCEEe
Confidence            55443       1223  33 3555533 55678888888888443 555444

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=97.97  E-value=0.00038  Score=71.79  Aligned_cols=153  Identities=14%  Similarity=0.025  Sum_probs=98.0

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhhc-------CCCcEEEEEeCCChhh-------HHHHH-HHHHhcCCCCCccCCHHH
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHLR-------SQGVSVVCIADPHLQS-------RQQAL-KLANAFDWPLKVFPGHQE   68 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~~-------~~~~~~~~v~d~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~   68 (376)
                      +++++|+|+|+|.+|+..+..+.+.+       +-+++|++|++++...       .+... .+..... + .-.+.+-+
T Consensus       456 ~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~~-~-~~~~~~~e  533 (810)
T PRK09466        456 EKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFDDEAV-E-WDEESLFL  533 (810)
T ss_pred             CceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHHhhcC-C-ccHHHHHH
Confidence            46799999999999987777664432       2478899999875431       11111 1111111 1 11122334


Q ss_pred             HhhC--CCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEe-c-CCCCCHHHHHHHHHHHHhCCCeEEE-EeeccccCHHH
Q 017143           69 LLDS--GLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVE-K-PLCTTVADCKKVVDAARKRPDILVQ-VGLEYRYMPPV  143 (376)
Q Consensus        69 ~l~~--~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~E-K-P~a~~~~e~~~l~~~a~~~~~~~~~-v~~~~r~~p~~  143 (376)
                      ++..  .+.++|+=||+...-..+..+||+  +|+||..- | +++.......+|.++++++ |+.+. -+-..---|..
T Consensus       534 ~i~~~~~~~~vvVd~t~~~~~~~~~~~aL~--~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~-~~~~~yEasV~~giPii  610 (810)
T PRK09466        534 WLRAHPYDELVVLDVTASEQLALQYPDFAS--HGFHVISANKLAGSSPSNFYRQIKDAFAKT-GRHWLYNATVGAGLPIN  610 (810)
T ss_pred             HHhhcCCCCcEEEECCCChHHHHHHHHHHH--cCCEEEcCCcccccccHHHHHHHHHHHHHc-CCeEEEeceeeeccChH
Confidence            4442  234588889987766667779999  99999875 3 3445678999999999554 65544 33334456888


Q ss_pred             HHHHHHHHcCCCCceEEEEE
Q 017143          144 AKLIQIVKSGSIGQVKMVAI  163 (376)
Q Consensus       144 ~~~k~~i~~g~iG~i~~~~~  163 (376)
                      ..++.++++|.  +|..++.
T Consensus       611 ~~l~~l~~~gd--~i~~i~G  628 (810)
T PRK09466        611 HTVRDLRNSGD--SILAISG  628 (810)
T ss_pred             HHHHHHHhccC--cEEEEEE
Confidence            88888887632  7777776

>PLN02775 Probable dihydrodipicolinate reductase

Probab=97.96  E-value=0.00014  Score=64.87  Aligned_cols=131  Identities=9%  Similarity=0.042  Sum_probs=93.0

Q ss_pred             CceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc--CCHHHHhhCC---CCC-E
Q 017143            5 DTVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF--PGHQELLDSG---LCD-V   77 (376)
Q Consensus         5 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~---~~D-~   77 (376)
                      +.+||.|.|+ |.||+..+.++.+   ++++|++..|+.+...+..-++.   |.++..+  +|++++|...   .+| +
T Consensus        10 ~~i~V~V~Ga~G~MG~~~~~av~~---~~~~Lv~~~~~~~~~~~~~~~~~---g~~v~~~~~~dl~~~l~~~~~~~~~~V   83 (286)
T PLN02775         10 SAIPIMVNGCTGKMGHAVAEAAVS---AGLQLVPVSFTGPAGVGVTVEVC---GVEVRLVGPSEREAVLSSVKAEYPNLI   83 (286)
T ss_pred             CCCeEEEECCCChHHHHHHHHHhc---CCCEEEEEeccccccccccceec---cceeeeecCccHHHHHHHhhccCCCEE
Confidence            4699999996 8899998888777   58999999997664211110222   2223477  9999999653   689 7


Q ss_pred             EEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHH
Q 017143           78 VVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIV  150 (376)
Q Consensus        78 V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i  150 (376)
                      +|-.|.|..-.+.+..|++  +|+++.+=-.. .+.++.   .+.+ +++++.+.+..|  |+-.+..+.+++
T Consensus        84 vIDFT~P~a~~~~~~~~~~--~g~~~VvGTTG-~~~e~l---~~~~-~~~~i~vv~apN--fSiGv~ll~~l~  147 (286)
T PLN02775         84 VVDYTLPDAVNDNAELYCK--NGLPFVMGTTG-GDRDRL---LKDV-EESGVYAVIAPQ--MGKQVVAFQAAM  147 (286)
T ss_pred             EEECCChHHHHHHHHHHHH--CCCCEEEECCC-CCHHHH---HHHH-hcCCccEEEECc--ccHHHHHHHHHH
Confidence            8889999999999999999  89999987775 455654   4445 334666555544  555565555655

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=97.96  E-value=5.2e-05  Score=64.14  Aligned_cols=124  Identities=18%  Similarity=0.229  Sum_probs=66.4

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHH------------HHHh-c-CCCCCccCCHHHHhhC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALK------------LANA-F-DWPLKVFPGHQELLDS   72 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~------------~~~~-~-~~~~~~~~~~~~~l~~   72 (376)
                      |||+|||+|.+|.-..-.+++.   ++++++ +|.++++.+...+            +-++ . .-..+.++++++.+.+
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~---G~~V~g-~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~   76 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEK---GHQVIG-VDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKD   76 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHT---TSEEEE-E-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH
T ss_pred             CEEEEECCCcchHHHHHHHHhC---CCEEEE-EeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhc
Confidence            6999999999999988888885   899886 6999985433321            1111 0 0112355677777766


Q ss_pred             CCCCEEEEeCCCCcc---------H----HHHHHHHcCCCCCeEEEec--CCCCCHHHHHHHHHHHHhCCCeEEEEeecc
Q 017143           73 GLCDVVVVSTPNMTH---------Y----QILMDIINHPKPHHVLVEK--PLCTTVADCKKVVDAARKRPDILVQVGLEY  137 (376)
Q Consensus        73 ~~~D~V~i~t~~~~h---------~----~~~~~al~~~~g~~Vl~EK--P~a~~~~e~~~l~~~a~~~~~~~~~v~~~~  137 (376)
                        .|+++||.|+...         .    +.+.+.++  .++-|.+|-  |..++.+-.+.+.+.. ...+..+.++|+.
T Consensus        77 --adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~--~~~lvV~~STvppGtt~~~~~~ile~~-~~~~~~f~la~~P  151 (185)
T PF03721_consen   77 --ADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLR--PGDLVVIESTVPPGTTEELLKPILEKR-SGKKEDFHLAYSP  151 (185)
T ss_dssp             ---SEEEE----EBETTTSBETHHHHHHHHHHHHHHC--SCEEEEESSSSSTTHHHHHHHHHHHHH-CCTTTCEEEEE--
T ss_pred             --cceEEEecCCCccccCCccHHHHHHHHHHHHHHHh--hcceEEEccEEEEeeehHhhhhhhhhh-cccccCCeEEECC
Confidence              7999999986432         1    12333456  566666665  4444555566676666 3223455555554


Q ss_pred             cc
Q 017143          138 RY  139 (376)
Q Consensus       138 r~  139 (376)
                      -|
T Consensus       152 Er  153 (185)
T PF03721_consen  152 ER  153 (185)
T ss_dssp             --
T ss_pred             Cc
Confidence            44

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PLN02256 arogenate dehydrogenase

Probab=97.95  E-value=5.7e-05  Score=69.11  Aligned_cols=79  Identities=19%  Similarity=0.305  Sum_probs=59.1

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      +++++|+|||+|.+|..++..+.+.   +.++++ +++++.     .+.+.++|+.  .+++.++++.. ++|+|++|+|
T Consensus        34 ~~~~kI~IIG~G~mG~slA~~L~~~---G~~V~~-~d~~~~-----~~~a~~~gv~--~~~~~~e~~~~-~aDvVilavp  101 (304)
T PLN02256         34 SRKLKIGIVGFGNFGQFLAKTFVKQ---GHTVLA-TSRSDY-----SDIAAELGVS--FFRDPDDFCEE-HPDVVLLCTS  101 (304)
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhC---CCEEEE-EECccH-----HHHHHHcCCe--eeCCHHHHhhC-CCCEEEEecC
Confidence            3568999999999999998888764   578774 566642     2345567764  67889888753 4899999999


Q ss_pred             CCccHHHHHHH
Q 017143           84 NMTHYQILMDI   94 (376)
Q Consensus        84 ~~~h~~~~~~a   94 (376)
                      +....+++.+.
T Consensus       102 ~~~~~~vl~~l  112 (304)
T PLN02256        102 ILSTEAVLRSL  112 (304)
T ss_pred             HHHHHHHHHhh
Confidence            98776666554

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=97.95  E-value=0.0003  Score=72.96  Aligned_cols=154  Identities=16%  Similarity=0.123  Sum_probs=98.5

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhc------CCCcEEEEEeCCChhhHH----HHHHHHHhcC--CCCCccCCHHHHhhC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLR------SQGVSVVCIADPHLQSRQ----QALKLANAFD--WPLKVFPGHQELLDS   72 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~------~~~~~~~~v~d~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~l~~   72 (376)
                      ++++|+|+|+|.+|...+..+.+.+      +-+++|++|++++.....    ....+.....  ......+.+-+++..
T Consensus       464 ~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  543 (819)
T PRK09436        464 QVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREELAEAGEPFDLDRLIRLVKE  543 (819)
T ss_pred             ccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHHHhhccCCCCHHHHHHHHhh
Confidence            5799999999999998777765432      237889999976433110    0011111100  000011223344443


Q ss_pred             C--CCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEe--cCCCCCHHHHHHHHHHHHhCCCeEEE-EeeccccCHHHHHHH
Q 017143           73 G--LCDVVVVSTPNMTHYQILMDIINHPKPHHVLVE--KPLCTTVADCKKVVDAARKRPDILVQ-VGLEYRYMPPVAKLI  147 (376)
Q Consensus        73 ~--~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~E--KP~a~~~~e~~~l~~~a~~~~~~~~~-v~~~~r~~p~~~~~k  147 (376)
                      .  ..|+|+=||+...-.....+||+  +|+||..-  +|++.+.....+|.++|+++ ++.+. .+-..---|....++
T Consensus       544 ~~~~~~vvvd~t~~~~~~~~~~~al~--~g~~VVtaNK~~~a~~~~~~~el~~~a~~~-~~~~~yeatV~~giPii~~l~  620 (819)
T PRK09436        544 YHLLNPVIVDCTSSQAVADQYADFLA--AGFHVVTPNKKANTSSYAYYHQLREAARKS-RRKFLYETNVGAGLPVIETLQ  620 (819)
T ss_pred             cCCCCCEEEECCCChHHHHHHHHHHH--cCCEEEcCCchhccCCHHHHHHHHHHHHHc-CCeEEEeeeeccccchHHHHH
Confidence            2  35899999997655666789999  99999874  46676778999999999554 65554 333444579999999


Q ss_pred             HHHHcCCCCceEEEEE
Q 017143          148 QIVKSGSIGQVKMVAI  163 (376)
Q Consensus       148 ~~i~~g~iG~i~~~~~  163 (376)
                      ++++.|.  +|..++.
T Consensus       621 ~~~~~g~--~i~~i~G  634 (819)
T PRK09436        621 NLLNAGD--ELLKFEG  634 (819)
T ss_pred             HHHhccC--cEEEEEE
Confidence            9986543  4555554

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.94  E-value=4.5e-05  Score=70.28  Aligned_cols=97  Identities=24%  Similarity=0.267  Sum_probs=67.7

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      ...+|+|||+|.+|..++..+...   +...+.+++++++   ++.++++++|..+..++++.+.+..  .|+|+.+|+.
T Consensus       177 ~~~~V~ViGaG~iG~~~a~~L~~~---g~~~V~v~~r~~~---ra~~la~~~g~~~~~~~~~~~~l~~--aDvVi~at~~  248 (311)
T cd05213         177 KGKKVLVIGAGEMGELAAKHLAAK---GVAEITIANRTYE---RAEELAKELGGNAVPLDELLELLNE--ADVVISATGA  248 (311)
T ss_pred             cCCEEEEECcHHHHHHHHHHHHHc---CCCEEEEEeCCHH---HHHHHHHHcCCeEEeHHHHHHHHhc--CCEEEECCCC
Confidence            357999999999999988888764   5555678899887   6778888887542223455666654  8999999998


Q ss_pred             CccHHHHHHHHcCCC-CCeEEEecCC
Q 017143           85 MTHYQILMDIINHPK-PHHVLVEKPL  109 (376)
Q Consensus        85 ~~h~~~~~~al~~~~-g~~Vl~EKP~  109 (376)
                      .........+++... +..++++=.+
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~viDlav  274 (311)
T cd05213         249 PHYAKIVERAMKKRSGKPRLIVDLAV  274 (311)
T ss_pred             CchHHHHHHHHhhCCCCCeEEEEeCC
Confidence            776555555554111 3456766544

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.94  E-value=9e-05  Score=68.96  Aligned_cols=109  Identities=15%  Similarity=0.150  Sum_probs=68.5

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH--hc--CCC----CCccCCHHHHhhCCCCCE
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN--AF--DWP----LKVFPGHQELLDSGLCDV   77 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~--~~--~~~----~~~~~~~~~~l~~~~~D~   77 (376)
                      ++||+|||+|.||......|.+.   +.+|+ +++++++..+...+...  .+  |..    +..+++.++.++.  .|+
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~---G~~V~-~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~--aD~   77 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASK---GVPVR-LWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAG--ADF   77 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHC---CCeEE-EEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcC--CCE
Confidence            46999999999999988888774   67755 78998874333322110  00  211    1245688887765  899


Q ss_pred             EEEeCCCCccHHHHHHHHcCCCCCe-EEEecCCCCCHHHHHHHHHHH
Q 017143           78 VVVSTPNMTHYQILMDIINHPKPHH-VLVEKPLCTTVADCKKVVDAA  123 (376)
Q Consensus        78 V~i~t~~~~h~~~~~~al~~~~g~~-Vl~EKP~a~~~~e~~~l~~~a  123 (376)
                      |++++|+....+ +.+.++  .+.. |.+-|.+.......+++.+..
T Consensus        78 Vi~~v~~~~~~~-v~~~l~--~~~~vi~~~~Gi~~~~~~~~~l~~~l  121 (328)
T PRK14618         78 AVVAVPSKALRE-TLAGLP--RALGYVSCAKGLAPDGGRLSELARVL  121 (328)
T ss_pred             EEEECchHHHHH-HHHhcC--cCCEEEEEeeccccCCCccchHHHHH
Confidence            999999986533 445565  4443 557777654322244444444

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=97.93  E-value=1.6e-05  Score=65.14  Aligned_cols=102  Identities=17%  Similarity=0.276  Sum_probs=72.0

Q ss_pred             CCceeEEEEeCChhhHHHHH-HhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeC
Q 017143            4 NDTVKYGIIGMGMMGREHFI-NLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~-~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t   82 (376)
                      .++.++.|||+|.+|+..+. .+...  .++++++++|.+++...  .+.   -++++..-++++..++..++|++++|+
T Consensus        82 ~~~tnviiVG~GnlG~All~Y~f~~~--~~~~iv~~FDv~~~~VG--~~~---~~v~V~~~d~le~~v~~~dv~iaiLtV  154 (211)
T COG2344          82 DKTTNVIIVGVGNLGRALLNYNFSKK--NGMKIVAAFDVDPDKVG--TKI---GDVPVYDLDDLEKFVKKNDVEIAILTV  154 (211)
T ss_pred             CcceeEEEEccChHHHHHhcCcchhh--cCceEEEEecCCHHHhC--ccc---CCeeeechHHHHHHHHhcCccEEEEEc
Confidence            45789999999999985332 22323  69999999999998321  221   246555567899999988899999999


Q ss_pred             CCCccHHHHHHHHcCCCCCeEEEecCCCCCH
Q 017143           83 PNMTHYQILMDIINHPKPHHVLVEKPLCTTV  113 (376)
Q Consensus        83 ~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~  113 (376)
                      |...-.+.+...+++| -|.||-=-|+-+..
T Consensus       155 Pa~~AQ~vad~Lv~aG-VkGIlNFtPv~l~~  184 (211)
T COG2344         155 PAEHAQEVADRLVKAG-VKGILNFTPVRLQV  184 (211)
T ss_pred             cHHHHHHHHHHHHHcC-CceEEeccceEecC
Confidence            9666566666677854 45566666655433

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=97.93  E-value=0.0002  Score=69.36  Aligned_cols=109  Identities=13%  Similarity=0.247  Sum_probs=74.7

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh---cCCCCCccCCHHHHhhC-CCCCEEEEeC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA---FDWPLKVFPGHQELLDS-GLCDVVVVST   82 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~-~~~D~V~i~t   82 (376)
                      .+|||||+|.||......|.+.   +++|+ ++|+++++   ++++.+.   .|..+..+++++++++. .++|+|+++.
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~---G~~V~-v~dr~~~~---~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v   74 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASR---GFKIS-VYNRTYEK---TEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLI   74 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHC---CCeEE-EEeCCHHH---HHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEe
Confidence            4799999999999999988875   77755 79999984   4444332   24323468899999975 3589999998


Q ss_pred             CCCccHHHHHH----HHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhC
Q 017143           83 PNMTHYQILMD----IINHPKPHHVLVEKPLCTTVADCKKVVDAARKR  126 (376)
Q Consensus        83 ~~~~h~~~~~~----al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~  126 (376)
                      |+....+-+++    .|+  .| .++++-- ..+..+..++.+.+.++
T Consensus        75 ~~~~~v~~vi~~l~~~L~--~g-~iIID~g-n~~~~dt~~r~~~l~~~  118 (470)
T PTZ00142         75 KAGEAVDETIDNLLPLLE--KG-DIIIDGG-NEWYLNTERRIKRCEEK  118 (470)
T ss_pred             CChHHHHHHHHHHHhhCC--CC-CEEEECC-CCCHHHHHHHHHHHHHc
Confidence            87655444433    234  34 5666653 33567777777777444

>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]

Probab=97.92  E-value=0.00095  Score=60.81  Aligned_cols=215  Identities=17%  Similarity=0.139  Sum_probs=141.3

Q ss_pred             ceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC-------------------C---c
Q 017143            6 TVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL-------------------K---V   62 (376)
Q Consensus         6 ~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~-------------------~---~   62 (376)
                      +.|+.|+| +|.||..-+.-+++++ ..|+|+++.....  .+...+.+++|+-..                   .   .
T Consensus         1 ~k~i~iLGSTGSIG~qtLdVi~~~p-~~f~vval~ag~n--~~~l~~q~~~f~P~~v~~~d~~~~~~l~~~~~~~~v~~G   77 (385)
T COG0743           1 MKKLTILGSTGSIGTQTLDVIRRNP-DKFEVVALAAGKN--VELLAEQIREFKPKYVVIADESAAKELEDLLPGTEVLVG   77 (385)
T ss_pred             CceEEEEecCCchhHHHHHHHHhCC-CcEEEEEEecCCc--HHHHHHHHHHhCCceEEecChHHHHHHHhhccCceEEec
Confidence            36899999 6999999999888884 5689999986642  334555555554220                   1   1


Q ss_pred             cCCHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHH
Q 017143           63 FPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPP  142 (376)
Q Consensus        63 ~~~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~  142 (376)
                      .+.+.++.+..+.|.|+.+.--..=....++|++  +||.|.+.--=++ +.-..-+.+++ +++|..+..-     +..
T Consensus        78 ~~~l~e~a~~~~~d~Vm~AivG~aGL~pTlaAi~--aGK~iaLANKEsL-V~aG~l~~~~~-k~~g~~llPV-----DSE  148 (385)
T COG0743          78 EEGLCELAAEDDADVVMNAIVGAAGLLPTLAAIK--AGKTIALANKESL-VTAGELVMDAA-KESGAQLLPV-----DSE  148 (385)
T ss_pred             HHHHHHHHhcCCCCEEeehhhhhcccHHHHHHHH--cCCceeecchhhh-hcccHHHHHHH-HHcCCEEecc-----Cch
Confidence            2335666677789999988887777788999999  8999987543221 22233455666 4446555443     445


Q ss_pred             HHHHHHHHHcCCCCceEEEEEeeccCCcccc---------------cCccccccccC--CcccccccccHHHHHHHHhCC
Q 017143          143 VAKLIQIVKSGSIGQVKMVAIREHRFPFLVK---------------VNDWNRFNENT--GGTLVEKCCHFFDLMRLFVGS  205 (376)
Q Consensus       143 ~~~~k~~i~~g~iG~i~~~~~~~~~~~~~~~---------------~~~w~~~~~~~--gG~l~d~g~H~ld~~~~l~G~  205 (376)
                      ...+-|.++...-+.|..+-..-..+++...               -++|..-.+.+  +-.|++-|--.+. +.||||-
T Consensus       149 H~AifQ~L~~~~~~~v~~iiLTASGGpFR~~~~~~L~~VT~eqAl~HPnWsMG~KITvDSATmmNKGLEvIE-A~~LF~~  227 (385)
T COG0743         149 HNAIFQCLQGETQKGVKKIILTASGGPFRDKSLEELANVTPEQALKHPNWSMGRKITVDSATMMNKGLEVIE-AHWLFGL  227 (385)
T ss_pred             hHHHHHHcCccccCcceEEEEecCCCCcCCCCHHHHccCCHHHHhcCCCCCCCCcccccHHHHhhhhHHHHH-HHHHhCC
Confidence            6677778877777778777666555554431               36787655532  3456666554443 5799997


Q ss_pred             CCeEEEEecccccccCccccCCCCCcccccEEEEEEecCCcEEE
Q 017143          206 NPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENGSRGM  249 (376)
Q Consensus       206 ~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~G~~~~  249 (376)
                      +..++....+.                ....+.+++|.||.+..
T Consensus       228 ~~~~IeVvIHP----------------QSiIHsmV~~~DGSviA  255 (385)
T COG0743         228 PYEQIEVVIHP----------------QSIIHSMVEYVDGSVIA  255 (385)
T ss_pred             CHHHeeEEEcc----------------cchheeeEEeccCCEEE
Confidence            77777765443                13577899999986643

>PLN02688 pyrroline-5-carboxylate reductase

Probab=97.90  E-value=0.00014  Score=65.45  Aligned_cols=78  Identities=15%  Similarity=0.192  Sum_probs=54.3

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcC-CCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRS-QGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~-~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      +||+|||+|.||...+..|.+... +..+++...++++++   ++.+. ++|+.  ..++.++++++  .|+|++|+++.
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~---~~~~~-~~g~~--~~~~~~e~~~~--aDvVil~v~~~   72 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPAR---RDVFQ-SLGVK--TAASNTEVVKS--SDVIILAVKPQ   72 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHH---HHHHH-HcCCE--EeCChHHHHhc--CCEEEEEECcH
Confidence            579999999999998888876510 112666433988873   44443 46754  67888888865  79999999865


Q ss_pred             ccHHHHH
Q 017143           86 THYQILM   92 (376)
Q Consensus        86 ~h~~~~~   92 (376)
                      .-.++..
T Consensus        73 ~~~~vl~   79 (266)
T PLN02688         73 VVKDVLT   79 (266)
T ss_pred             HHHHHHH
Confidence            5444443

>PRK06823 ornithine cyclodeaminase; Validated

Probab=97.90  E-value=6.9e-05  Score=68.84  Aligned_cols=94  Identities=16%  Similarity=0.302  Sum_probs=72.3

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      +.-+++|||+|..++.|+.++...  ..++-+-|+++++++.++..+..++.++++...++.++++..  .|+|+-+|+.
T Consensus       127 d~~~l~iiG~G~qA~~~~~a~~~v--~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~--ADIV~taT~s  202 (315)
T PRK06823        127 HVSAIGIVGTGIQARMQLMYLKNV--TDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHA--ANLIVTTTPS  202 (315)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhc--CCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcC--CCEEEEecCC
Confidence            457899999999999999999888  567888899999996554444444446665557899999976  8999999875


Q ss_pred             CccHHHH-HHHHcCCCCCeEEEe
Q 017143           85 MTHYQIL-MDIINHPKPHHVLVE  106 (376)
Q Consensus        85 ~~h~~~~-~~al~~~~g~~Vl~E  106 (376)
                      ..  +++ .+-++  .|.||..=
T Consensus       203 ~~--P~~~~~~l~--~G~hi~~i  221 (315)
T PRK06823        203 RE--PLLQAEDIQ--PGTHITAV  221 (315)
T ss_pred             CC--ceeCHHHcC--CCcEEEec
Confidence            43  333 35688  89999863

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=97.90  E-value=0.00019  Score=65.44  Aligned_cols=109  Identities=17%  Similarity=0.233  Sum_probs=77.6

Q ss_pred             eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCcc
Q 017143            8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMTH   87 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~h   87 (376)
                      ||+|||+|.||......|.+.   +++++ ++++++.    ++++. +.|..  .+.+..++.+.  .|+|++|.|+..+
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~---G~~v~-v~~~~~~----~~~~~-~~g~~--~~~s~~~~~~~--advVi~~v~~~~~   68 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARA---GHQLH-VTTIGPV----ADELL-SLGAV--SVETARQVTEA--SDIIFIMVPDTPQ   68 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHC---CCeEE-EEeCCHh----HHHHH-HcCCe--ecCCHHHHHhc--CCEEEEeCCChHH
Confidence            799999999999988888774   67766 7888763    23333 45653  67888888865  8999999999865


Q ss_pred             HHHHH-------HHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 017143           88 YQILM-------DIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVG  134 (376)
Q Consensus        88 ~~~~~-------~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~  134 (376)
                      ..-+.       ..+.  .| .++++- -+.++...+++.+.+.++ |+.+..+
T Consensus        69 v~~v~~~~~g~~~~~~--~g-~ivvd~-sT~~p~~~~~~~~~~~~~-G~~~vda  117 (292)
T PRK15059         69 VEEVLFGENGCTKASL--KG-KTIVDM-SSISPIETKRFARQVNEL-GGDYLDA  117 (292)
T ss_pred             HHHHHcCCcchhccCC--CC-CEEEEC-CCCCHHHHHHHHHHHHHc-CCCEEEe
Confidence            44432       1123  34 466665 367899999999998554 6665554

>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase

Probab=97.85  E-value=0.0025  Score=59.19  Aligned_cols=212  Identities=16%  Similarity=0.157  Sum_probs=133.0

Q ss_pred             eeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-----------------------CCc
Q 017143            7 VKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-----------------------LKV   62 (376)
Q Consensus         7 ~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-----------------------~~~   62 (376)
                      .||+|+| +|.+|..-+.-+++++ ..|+|++++..+.-  +.+.+.+++|+-.                       +++
T Consensus         2 k~i~IlGsTGSIG~qtL~Vi~~~~-~~f~v~~Laa~~n~--~~L~~q~~~f~p~~v~i~d~~~~~~l~~~l~~~~~~~~v   78 (389)
T TIGR00243         2 KQIVILGSTGSIGKSTLDVVRHNP-DHFQVVALSAGKNV--ALMVEQILEFRPKFVAIDDEASLKDLKTMLQQQGSRTEV   78 (389)
T ss_pred             ceEEEEecChHHHHHHHHHHHhCc-cccEEEEEEcCCCH--HHHHHHHHHcCCCEEEEcCHHHHHHHHHHhhcCCCCcEE
Confidence            4899999 5999999888887763 46999999876543  2445555554322                       111


Q ss_pred             c---CCHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHH-HHHHHhCCCeEEEEeeccc
Q 017143           63 F---PGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKV-VDAARKRPDILVQVGLEYR  138 (376)
Q Consensus        63 ~---~~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l-~~~a~~~~~~~~~v~~~~r  138 (376)
                      +   +.+.++.+.+++|.|+.+..-..=......|++  +||.|.+.--  .++--+-.+ .+.++++ +..+..-    
T Consensus        79 ~~G~~~l~~l~~~~~~D~vv~AivG~aGL~pt~~Ai~--~gk~iaLANK--EsLV~aG~li~~~a~~~-~~~I~PV----  149 (389)
T TIGR00243        79 LVGEEGICEMAALEDVDQVMNAIVGAAGLLPTLAAIR--AGKTIALANK--ESLVTAGHLFLDAVKKY-GVQLLPV----  149 (389)
T ss_pred             EECHHHHHHHHcCCCCCEEEEhhhcHhhHHHHHHHHH--CCCcEEEech--hHHHhhHHHHHHHHHHc-CCeEEee----
Confidence            1   134455555679999999998888899999999  8888877433  233333334 4566343 5343332    


Q ss_pred             cCHHHHHHHHHHHcC-CCCceEEEEEeeccCCccc---------------ccCccccccccC--CcccccccccHHHHHH
Q 017143          139 YMPPVAKLIQIVKSG-SIGQVKMVAIREHRFPFLV---------------KVNDWNRFNENT--GGTLVEKCCHFFDLMR  200 (376)
Q Consensus       139 ~~p~~~~~k~~i~~g-~iG~i~~~~~~~~~~~~~~---------------~~~~w~~~~~~~--gG~l~d~g~H~ld~~~  200 (376)
                       +.....+-|.+++| ...+|..+..+-..+++..               .-+.|..-++-+  .-.|++-|.-.+ =+.
T Consensus       150 -DSEHsAIfQ~L~~g~~~~~v~kiiLTASGGpFr~~~~e~l~~vt~~~AL~HP~W~MG~KITIDSATmmNKglEvI-EA~  227 (389)
T TIGR00243       150 -DSEHNAIFQSLQHGLEELGVVSIILTASGGAFRDTPLEDLPTVTPQQALKHPNWSMGRKITIDSATMMNKGLEYI-EAR  227 (389)
T ss_pred             -cchHhHHHHHcccCCCcccccEEEEECCCcccCCCCHHHHhCCCHHHHhcCCCCcCCCeeeeehHhhhhhhHHHH-HHH
Confidence             33445556666633 2345777766655666543               135776554422  334555544333 357


Q ss_pred             HHhCCCCeEEEEecccccccCccccCCCCCcccccEEEEEEecCCcEE
Q 017143          201 LFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENGSRG  248 (376)
Q Consensus       201 ~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~G~~~  248 (376)
                      ||||-++.++.+..+.                ....+.+++|.||.+.
T Consensus       228 ~LF~~~~d~I~vvIHp----------------qSiIHsmVef~DGSv~  259 (389)
T TIGR00243       228 WLFGASAEQIDVLIHP----------------QSIIHSMVEFQDGSVI  259 (389)
T ss_pred             HHcCCCHHHeEEEECC----------------CCceeEEEEEcCccEE
Confidence            8999777777776443                2468899999998664

1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.

>PRK07589 ornithine cyclodeaminase; Validated

Probab=97.84  E-value=9.5e-05  Score=68.61  Aligned_cols=95  Identities=19%  Similarity=0.255  Sum_probs=71.2

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh---cCCCCCccCCHHHHhhCCCCCEEEEe
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA---FDWPLKVFPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~D~V~i~   81 (376)
                      ..-+++|||+|..+..|+.++...  -.++=+-|+++++++   +++++++   .++++...++.++++.+  .|+|+-+
T Consensus       128 da~~l~iiGaG~QA~~~l~a~~~v--r~i~~V~v~~r~~~~---a~~~~~~~~~~~~~v~~~~~~~~av~~--ADIIvta  200 (346)
T PRK07589        128 DSRTMALIGNGAQSEFQALAFKAL--LGIEEIRLYDIDPAA---TAKLARNLAGPGLRIVACRSVAEAVEG--ADIITTV  200 (346)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHh--CCceEEEEEeCCHHH---HHHHHHHHHhcCCcEEEeCCHHHHHhc--CCEEEEe
Confidence            346899999999999999999888  467778899999985   4444433   35555567999999987  8999999


Q ss_pred             CCCCccHHHH-HHHHcCCCCCeEEEecC
Q 017143           82 TPNMTHYQIL-MDIINHPKPHHVLVEKP  108 (376)
Q Consensus        82 t~~~~h~~~~-~~al~~~~g~~Vl~EKP  108 (376)
                      |+.....+++ .+.++  .|.||.+=-.
T Consensus       201 T~S~~~~Pvl~~~~lk--pG~hV~aIGs  226 (346)
T PRK07589        201 TADKTNATILTDDMVE--PGMHINAVGG  226 (346)
T ss_pred             cCCCCCCceecHHHcC--CCcEEEecCC
Confidence            9754322333 34678  8999987433

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=97.83  E-value=7.1e-05  Score=68.41  Aligned_cols=95  Identities=12%  Similarity=0.185  Sum_probs=71.8

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHH-HHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQA-LKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      +.-+++|||+|..|..|+.++...  ..++=+-|+++++++.+.. +++.+++++++...++.++++.+  .|+|+-+|+
T Consensus       116 da~~l~iiGaG~QA~~~~~a~~~v--~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~--aDIV~taT~  191 (301)
T PRK06407        116 NVENFTIIGSGFQAETQLEGMASV--YNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRD--ADTITSITN  191 (301)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhc--CCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhc--CCEEEEecC
Confidence            347899999999999999999988  5788888999999854332 23333457665667999999977  899999988


Q ss_pred             CCccHHHHHHHHcCCCCCeEEEe
Q 017143           84 NMTHYQILMDIINHPKPHHVLVE  106 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~E  106 (376)
                      ... .-+-.+-|+  .|.||..=
T Consensus       192 s~~-P~~~~~~l~--pg~hV~ai  211 (301)
T PRK06407        192 SDT-PIFNRKYLG--DEYHVNLA  211 (301)
T ss_pred             CCC-cEecHHHcC--CCceEEec
Confidence            543 222234578  88999873

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.83  E-value=3.6e-05  Score=61.71  Aligned_cols=92  Identities=22%  Similarity=0.304  Sum_probs=66.7

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcC---CCCCccCCHHHHhhCCCCCEEEEe
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFD---WPLKVFPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~D~V~i~   81 (376)
                      +.-|+.|||+|.+|+..+..+...   +++-+.|++|+.+   ++++++++++   +.+..++++.+.+..  .|+|+.+
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~---g~~~i~i~nRt~~---ra~~l~~~~~~~~~~~~~~~~~~~~~~~--~DivI~a   82 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAAL---GAKEITIVNRTPE---RAEALAEEFGGVNIEAIPLEDLEEALQE--ADIVINA   82 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHT---TSSEEEEEESSHH---HHHHHHHHHTGCSEEEEEGGGHCHHHHT--ESEEEE-
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHc---CCCEEEEEECCHH---HHHHHHHHcCccccceeeHHHHHHHHhh--CCeEEEe
Confidence            357999999999999999988886   6776668999988   6778887772   222346667777776  8999999


Q ss_pred             CCCCccHHHHHHHHcCCCCC---eEEEec
Q 017143           82 TPNMTHYQILMDIINHPKPH---HVLVEK  107 (376)
Q Consensus        82 t~~~~h~~~~~~al~~~~g~---~Vl~EK  107 (376)
                      ||...+ .+-...++  ...   .++++=
T Consensus        83 T~~~~~-~i~~~~~~--~~~~~~~~v~Dl  108 (135)
T PF01488_consen   83 TPSGMP-IITEEMLK--KASKKLRLVIDL  108 (135)
T ss_dssp             SSTTST-SSTHHHHT--TTCHHCSEEEES
T ss_pred             cCCCCc-ccCHHHHH--HHHhhhhceecc
Confidence            997665 44445566  443   477775

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=97.82  E-value=3.9e-05  Score=70.61  Aligned_cols=98  Identities=18%  Similarity=0.287  Sum_probs=62.9

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      ..-+++|||+|..|..|+..+....  .++-+-|++|++++.++..+..+++++++...+|.++++.+  .|+|+-|||.
T Consensus       127 ~~~~l~viGaG~QA~~~~~a~~~~~--~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~--aDii~taT~s  202 (313)
T PF02423_consen  127 DARTLGVIGAGVQARWHLRALAAVR--PIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRG--ADIIVTATPS  202 (313)
T ss_dssp             T--EEEEE--SHHHHHHHHHHHHHS----SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTT--SSEEEE----
T ss_pred             CCceEEEECCCHHHHHHHHHHHHhC--CceEEEEEccChhHHHHHHHhhccccccceeccchhhhccc--CCEEEEccCC
Confidence            3468999999999999999998884  48888999999986554433333467776678999999987  8999999987


Q ss_pred             CccHHHHH-HHHcCCCCCeEEEecC
Q 017143           85 MTHYQILM-DIINHPKPHHVLVEKP  108 (376)
Q Consensus        85 ~~h~~~~~-~al~~~~g~~Vl~EKP  108 (376)
                      ....+++. .-|+  .|.||..=-.
T Consensus       203 ~~~~P~~~~~~l~--~g~hi~~iGs  225 (313)
T PF02423_consen  203 TTPAPVFDAEWLK--PGTHINAIGS  225 (313)
T ss_dssp             SSEEESB-GGGS---TT-EEEE-S-
T ss_pred             CCCCccccHHHcC--CCcEEEEecC
Confidence            66423222 4578  8899987433

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PLN02358 glyceraldehyde-3-phosphate dehydrogenase

Probab=97.80  E-value=0.0001  Score=67.91  Aligned_cols=101  Identities=21%  Similarity=0.281  Sum_probs=67.7

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH------hcCC-CCC---------------c
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN------AFDW-PLK---------------V   62 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~------~~~~-~~~---------------~   62 (376)
                      +++||||+|+|.||+.|++.+.+.  +++++++|+|++.+.. ...-+-+      +|.- ++.               +
T Consensus         4 ~~lrVaI~G~GrIGr~~~r~~~~~--~~velvaI~D~~~~~~-~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v   80 (338)
T PLN02358          4 KKIRIGINGFGRIGRLVARVVLQR--DDVELVAVNDPFITTE-YMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV   80 (338)
T ss_pred             CceEEEEEeecHHHHHHHHHHhhC--CCcEEEEEeCCCCCHH-HHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEE
Confidence            369999999999999999998876  8999999999765432 2222211      1110 100               0


Q ss_pred             --cCCHHHHhh-CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCC
Q 017143           63 --FPGHQELLD-SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPL  109 (376)
Q Consensus        63 --~~~~~~~l~-~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~  109 (376)
                        .++.+++-. +..+|+|+-||......+.+..++++|+ |-|++--|.
T Consensus        81 ~~~~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGa-k~ViiSap~  129 (338)
T PLN02358         81 FGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGA-KKVVISAPS  129 (338)
T ss_pred             EEcCCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCC-EEEEeCCCC
Confidence              011222211 2469999999999999999999999542 556666553

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=97.80  E-value=0.00031  Score=64.03  Aligned_cols=108  Identities=19%  Similarity=0.220  Sum_probs=76.9

Q ss_pred             EEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCccHHH
Q 017143           11 IIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMTHYQI   90 (376)
Q Consensus        11 iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~h~~~   90 (376)
                      |||+|.||......+.+.   +.+|+ ++|+++++   .+.+. +.|.  ...++.++++++  .|+|++|.|+..+.+.
T Consensus         1 ~IGlG~mG~~mA~~L~~~---G~~V~-v~dr~~~~---~~~l~-~~g~--~~~~s~~~~~~~--advVil~vp~~~~~~~   68 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKA---GHPVR-VFDLFPDA---VEEAV-AAGA--QAAASPAEAAEG--ADRVITMLPAGQHVIS   68 (288)
T ss_pred             CCcccHhHHHHHHHHHhC---CCeEE-EEeCCHHH---HHHHH-HcCC--eecCCHHHHHhc--CCEEEEeCCChHHHHH
Confidence            689999999888888774   67755 78999874   44443 3464  367889999887  7999999999777555


Q ss_pred             HH----HHHcCC-CCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 017143           91 LM----DIINHP-KPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQV  133 (376)
Q Consensus        91 ~~----~al~~~-~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v  133 (376)
                      +.    ..+... .| .++++-. +.+++..+++.+.+.++ |+.+.-
T Consensus        69 v~~g~~~l~~~~~~g-~~vid~s-t~~p~~~~~~~~~~~~~-g~~~vd  113 (288)
T TIGR01692        69 VYSGDEGILPKVAKG-SLLIDCS-TIDPDSARKLAELAAAH-GAVFMD  113 (288)
T ss_pred             HHcCcchHhhcCCCC-CEEEECC-CCCHHHHHHHHHHHHHc-CCcEEE
Confidence            44    222210 33 4666666 88999999999998554 655433

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=97.76  E-value=4.6e-05  Score=71.09  Aligned_cols=146  Identities=12%  Similarity=0.161  Sum_probs=85.8

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcC------CCC----CccCCHH-HHhhCCC
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFD------WPL----KVFPGHQ-ELLDSGL   74 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~------~~~----~~~~~~~-~~l~~~~   74 (376)
                      +||+|+|+ |.+|...+..+..+  +.++|+++++.+..   ..+.+...+.      .+.    ..+.+++ +.+  .+
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~--~~~~l~~v~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~   73 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKH--PYFELAKVVASPRS---AGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVAS--KD   73 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC--CCceEEEEEEChhh---cCCcchhhccccccCCCccccceeEEEeCCHHHh--cc
Confidence            58999995 88899888888777  78999999875543   2222222221      110    0111222 222  35


Q ss_pred             CCEEEEeCCCCccHHHHHHHHcCCCCCeEEE-------e--cCCCC-CH-HHHHHHHHHHHhC-CCeEEEEeeccccCHH
Q 017143           75 CDVVVVSTPNMTHYQILMDIINHPKPHHVLV-------E--KPLCT-TV-ADCKKVVDAARKR-PDILVQVGLEYRYMPP  142 (376)
Q Consensus        75 ~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~-------E--KP~a~-~~-~e~~~l~~~a~~~-~~~~~~v~~~~r~~p~  142 (376)
                      +|+|+.++|+..|.+++.++++  +|++|+.       +  .|... .+ .++..+.+.-+++ .+-.+.-+-.+.-...
T Consensus        74 ~DvVf~a~p~~~s~~~~~~~~~--~G~~VIDlsg~fR~~~~~~~~~p~vn~~~~~~~e~~~~~~~~~~iVanPgC~~t~~  151 (341)
T TIGR00978        74 VDIVFSALPSEVAEEVEPKLAE--AGKPVFSNASNHRMDPDVPLIIPEVNSDHLELLKVQKERGWKGFIVTNPNCTTAGL  151 (341)
T ss_pred             CCEEEEeCCHHHHHHHHHHHHH--CCCEEEECChhhccCCCCceeccccCHHHHhhHHhhhhhccCccEEeCCCcHHHHH
Confidence            9999999999999999999999  8899987       2  22211 11 1222332222111 0112333434444555


Q ss_pred             HHHHHHHHHcCCCCceEEE
Q 017143          143 VAKLIQIVKSGSIGQVKMV  161 (376)
Q Consensus       143 ~~~~k~~i~~g~iG~i~~~  161 (376)
                      ...++-+.+.+.|-++...
T Consensus       152 ~lal~pL~~~~~i~~v~v~  170 (341)
T TIGR00978       152 TLALKPLIDAFGIKKVHVT  170 (341)
T ss_pred             HHHHHHHHHhCCCcEEEEE
Confidence            6667777787777654433

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=97.73  E-value=0.00018  Score=65.96  Aligned_cols=74  Identities=28%  Similarity=0.341  Sum_probs=56.0

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ..+|+|||+|.+|..++..|+..   +++++.. ++...   +..+.+++.|+.  .. +.+++++.  .|+|++++|+.
T Consensus        17 gktIgIIG~GsmG~AlA~~L~~s---G~~Vvv~-~r~~~---~s~~~A~~~G~~--~~-s~~eaa~~--ADVVvLaVPd~   84 (330)
T PRK05479         17 GKKVAIIGYGSQGHAHALNLRDS---GVDVVVG-LREGS---KSWKKAEADGFE--VL-TVAEAAKW--ADVIMILLPDE   84 (330)
T ss_pred             CCEEEEEeeHHHHHHHHHHHHHC---CCEEEEE-ECCch---hhHHHHHHCCCe--eC-CHHHHHhc--CCEEEEcCCHH
Confidence            46899999999999999998775   7787754 44333   233445566764  43 78999887  79999999999


Q ss_pred             ccHHHH
Q 017143           86 THYQIL   91 (376)
Q Consensus        86 ~h~~~~   91 (376)
                      .+..+.
T Consensus        85 ~~~~V~   90 (330)
T PRK05479         85 VQAEVY   90 (330)
T ss_pred             HHHHHH
Confidence            887776

>PLN02858 fructose-bisphosphate aldolase

Probab=97.72  E-value=0.00043  Score=75.43  Aligned_cols=136  Identities=15%  Similarity=0.134  Sum_probs=93.3

Q ss_pred             CCCCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEE
Q 017143            1 MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         1 m~~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      |.+++..+||+||+|.||......|...   +++++ ++|++++   +++++... |.  ...++.+++.+.  .|+|++
T Consensus       319 ~~~~~~~~IGfIGlG~MG~~mA~~L~~~---G~~V~-v~dr~~~---~~~~l~~~-Ga--~~~~s~~e~~~~--aDvVi~  386 (1378)
T PLN02858        319 MQAKPVKRIGFIGLGAMGFGMASHLLKS---NFSVC-GYDVYKP---TLVRFENA-GG--LAGNSPAEVAKD--VDVLVI  386 (1378)
T ss_pred             ccccCCCeEEEECchHHHHHHHHHHHHC---CCEEE-EEeCCHH---HHHHHHHc-CC--eecCCHHHHHhc--CCEEEE
Confidence            5454558999999999999998888774   78865 7899987   44555443 43  256889999887  899999


Q ss_pred             eCCCCccHHHHH-------HHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHh--------------------CCCeEEEE
Q 017143           81 STPNMTHYQILM-------DIINHPKPHHVLVEKPLCTTVADCKKVVDAARK--------------------RPDILVQV  133 (376)
Q Consensus        81 ~t~~~~h~~~~~-------~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~--------------------~~~~~~~v  133 (376)
                      |.|+.....-+.       ..++  .| .++++-. +.++...+++.+.+.+                    .+.+.+|+
T Consensus       387 ~V~~~~~v~~Vl~g~~g~~~~l~--~g-~ivVd~S-TvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imv  462 (1378)
T PLN02858        387 MVANEVQAENVLFGDLGAVSALP--AG-ASIVLSS-TVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMA  462 (1378)
T ss_pred             ecCChHHHHHHHhchhhHHhcCC--CC-CEEEECC-CCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEE
Confidence            999876654443       2334  44 4566653 5688888888887744                    22345555


Q ss_pred             eeccccCHHHHHHHHHHHcCCCCc
Q 017143          134 GLEYRYMPPVAKLIQIVKSGSIGQ  157 (376)
Q Consensus       134 ~~~~r~~p~~~~~k~~i~~g~iG~  157 (376)
                      |-.   ...+.+++.+++.  +|+
T Consensus       463 gG~---~~~~~~~~plL~~--lg~  481 (1378)
T PLN02858        463 SGT---DEALKSAGSVLSA--LSE  481 (1378)
T ss_pred             ECC---HHHHHHHHHHHHH--HhC
Confidence            532   2457777777763  554

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=97.71  E-value=0.00032  Score=67.39  Aligned_cols=71  Identities=23%  Similarity=0.327  Sum_probs=51.7

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh------------------cCCCCCccCCHHH
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA------------------FDWPLKVFPGHQE   68 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~   68 (376)
                      +||+|||+|.+|......+++.   +.+|+ ++|+++++.   +++.+.                  .|- +...+++++
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~---G~~V~-~~d~~~~~v---~~l~~g~~~~~e~~l~~~~~~~~~~g~-l~~~~~~~~   72 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADL---GHEVT-GVDIDQEKV---DKLNKGKSPIYEPGLDELLAKALAAGR-LRATTDYED   72 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhc---CCeEE-EEECCHHHH---HHhhcCCCCCCCCCHHHHHHHhhhcCC-eEEECCHHH
Confidence            3799999999999988888774   77866 579988844   333321                  121 235567888


Q ss_pred             HhhCCCCCEEEEeCCCCcc
Q 017143           69 LLDSGLCDVVVVSTPNMTH   87 (376)
Q Consensus        69 ~l~~~~~D~V~i~t~~~~h   87 (376)
                      ++++  .|+|+||+|+..+
T Consensus        73 ~~~~--advvii~vpt~~~   89 (411)
T TIGR03026        73 AIRD--ADVIIICVPTPLK   89 (411)
T ss_pred             HHhh--CCEEEEEeCCCCC
Confidence            8765  8999999998765

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=97.71  E-value=0.00063  Score=65.96  Aligned_cols=111  Identities=13%  Similarity=0.231  Sum_probs=75.6

Q ss_pred             eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc--CCCCCccCCHHHHhhC-CCCCEEEEeCCC
Q 017143            8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF--DWPLKVFPGHQELLDS-GLCDVVVVSTPN   84 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~-~~~D~V~i~t~~   84 (376)
                      .|||||+|.||...+..+.+.   +++|+ ++|++++   +++++.+++  |-.+..+++.+++.+. ..+|+|+++.|+
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~---G~~V~-v~drt~~---~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~   73 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADH---GFTVS-VYNRTPE---KTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKA   73 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhc---CCeEE-EEeCCHH---HHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCC
Confidence            489999999999999988875   77755 7899988   555665542  2012367888888864 358999999999


Q ss_pred             CccHHHHHHH----HcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeE
Q 017143           85 MTHYQILMDI----INHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDIL  130 (376)
Q Consensus        85 ~~h~~~~~~a----l~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~  130 (376)
                      ....+.++..    |+  .| +++++-- .....+..++.+.+.++ |+.
T Consensus        74 ~~~v~~Vi~~l~~~L~--~g-~iIID~g-ns~~~~t~~~~~~l~~~-gi~  118 (467)
T TIGR00873        74 GAPVDAVINQLLPLLE--KG-DIIIDGG-NSHYPDTERRYKELKAK-GIL  118 (467)
T ss_pred             cHHHHHHHHHHHhhCC--CC-CEEEECC-CcCHHHHHHHHHHHHhc-CCE
Confidence            7665555443    34  34 5777743 23556666666666343 544

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit

Probab=97.70  E-value=0.0004  Score=62.62  Aligned_cols=121  Identities=17%  Similarity=0.158  Sum_probs=83.0

Q ss_pred             CceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143            5 DTVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         5 ~~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      ++-||.|.| +|..|..|.+.+...   ++++++-+.+..-    .   .+-+|++  .|.+++|+-+..++|+++|++|
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~~~~~~---g~~~v~~V~p~~~----~---~~v~G~~--~y~sv~dlp~~~~~Dlavi~vp   72 (286)
T TIGR01019         5 KDTKVIVQGITGSQGSFHTEQMLAY---GTNIVGGVTPGKG----G---TTVLGLP--VFDSVKEAVEETGANASVIFVP   72 (286)
T ss_pred             CCCcEEEecCCcHHHHHHHHHHHhC---CCCEEEEECCCCC----c---ceecCee--ccCCHHHHhhccCCCEEEEecC
Confidence            467999999 599999999998776   5556665555511    1   1135766  9999999987645899999999


Q ss_pred             CCccHHHHHHHHcCCCCC-eEEEecCCCCCHHHHHHHHHHHHhCCCeEEE-EeeccccCH
Q 017143           84 NMTHYQILMDIINHPKPH-HVLVEKPLCTTVADCKKVVDAARKRPDILVQ-VGLEYRYMP  141 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~-~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~-v~~~~r~~p  141 (376)
                      ...=.+.+.+|.+  +|. .+.+--.. ....+.++|.+.|++ +|+.+. .|+.--++|
T Consensus        73 a~~v~~~l~e~~~--~Gvk~avIis~G-f~e~~~~~l~~~a~~-~girilGPNc~Giin~  128 (286)
T TIGR01019        73 APFAADAIFEAID--AGIELIVCITEG-IPVHDMLKVKRYMEE-SGTRLIGPNCPGIITP  128 (286)
T ss_pred             HHHHHHHHHHHHH--CCCCEEEEECCC-CCHHHHHHHHHHHHH-cCCEEECCCCceEEcc
Confidence            9999999999999  554 44342221 223355889999955 465543 333333444

ATP citrate lyases appear to form an outgroup.

>TIGR00871 zwf glucose-6-phosphate 1-dehydrogenase

Probab=97.69  E-value=0.0003  Score=67.87  Aligned_cols=119  Identities=22%  Similarity=0.288  Sum_probs=77.0

Q ss_pred             ceeEEEEeC-ChhhH-HHHHHhhhhc-----CCCcEEEEEeCCChhhH---HH----------------HHHHHHhc---
Q 017143            6 TVKYGIIGM-GMMGR-EHFINLHHLR-----SQGVSVVCIADPHLQSR---QQ----------------ALKLANAF---   56 (376)
Q Consensus         6 ~~~v~iiG~-G~~g~-~~~~~~~~~~-----~~~~~~~~v~d~~~~~~---~~----------------~~~~~~~~---   56 (376)
                      +..+.|+|+ |-.++ ..+|+|.++.     ++++.|+|+.-.+-+..   +.                .++|.+..   
T Consensus         2 ~~~~vifGatGDLa~rkL~PaL~~L~~~~~lp~~~~Iig~aR~~~s~e~f~~~v~~~l~~~~~~~~~~~~~~F~~~~~Y~   81 (482)
T TIGR00871         2 PCILVIFGASGDLARKKLFPALYRLFRNGLLPPDFRIVGVARRDLSVEDFRKQVREAIIKFETEEIDEQLDDFAQRLSYV   81 (482)
T ss_pred             CeEEEEECCccHHHHhhHHHHHHHHHHcCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHhcCEEE
Confidence            356888885 66665 5777776652     25899998763322211   00                12222211   


Q ss_pred             --CCC-CCccCCHHHHhhCC-------CCCEEEEeCCCCccHHHHHHHHcCC---CC-CeEEEecCCCCCHHHHHHHHHH
Q 017143           57 --DWP-LKVFPGHQELLDSG-------LCDVVVVSTPNMTHYQILMDIINHP---KP-HHVLVEKPLCTTVADCKKVVDA  122 (376)
Q Consensus        57 --~~~-~~~~~~~~~~l~~~-------~~D~V~i~t~~~~h~~~~~~al~~~---~g-~~Vl~EKP~a~~~~e~~~l~~~  122 (376)
                        ++. ...|..+.+++.+.       .-+++++++||..|..++..+.++|   .| ++|+||||++.+++.|++|.+.
T Consensus        82 ~~d~~~~~~y~~L~~~l~~~e~~~~~~~n~lfYLA~PP~~f~~i~~~L~~~gl~~~g~~RIVvEKPFG~DL~SA~~Ln~~  161 (482)
T TIGR00871        82 SGDYDDDESYDSLNEHLEQLDKTRGTEGNRLFYLATPPSVFGTIIKQLKKHGLNEQGWSRVVVEKPFGHDLASAQELNKQ  161 (482)
T ss_pred             ecCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEECChHHHHHHHHHHHHhCCCcCCCeEEEEECCCCCCHHHHHHHHHH
Confidence              111 12233444445431       2369999999999999999888833   12 7999999999999999999998


Q ss_pred             HH
Q 017143          123 AR  124 (376)
Q Consensus       123 a~  124 (376)
                      ..
T Consensus       162 l~  163 (482)
T TIGR00871       162 LR  163 (482)
T ss_pred             HH
Confidence            84

This is a well-studied enzyme family, with sequences available from well over 50 species. The trusted cutoff is set above the score for the Drosophila melanogaster CG7140 gene product, a homolog of unknown function. G6PD homologs from the bacteria Aquifex aeolicus and Helicobacter pylori lack several motifs well conserved most other members, were omitted from the seed alignment, and score well below the trusted cutoff.

>PRK06199 ornithine cyclodeaminase; Validated

Probab=97.68  E-value=0.00018  Score=67.87  Aligned_cols=96  Identities=18%  Similarity=0.326  Sum_probs=69.1

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHH-HHHHHhc-CC-CCCccCCHHHHhhCCCCCEEEEe
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQA-LKLANAF-DW-PLKVFPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~~~-~~-~~~~~~~~~~~l~~~~~D~V~i~   81 (376)
                      ..-+++|||+|..+..|+..+...+ +.++-+-|+++++++.++. +++.+++ ++ ++...+|.++++.+  .|+|+-|
T Consensus       154 da~~l~iiG~G~QA~~~l~a~~~v~-~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~--ADIVvta  230 (379)
T PRK06199        154 DSKVVGLLGPGVMGKTILAAFMAVC-PGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRG--SDIVTYC  230 (379)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhc-CCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcC--CCEEEEc
Confidence            3468999999999999999998864 5588889999999854332 2233333 33 34567999999987  8999999


Q ss_pred             CCCCc----cHHHH-HHHHcCCCCCeEEE
Q 017143           82 TPNMT----HYQIL-MDIINHPKPHHVLV  105 (376)
Q Consensus        82 t~~~~----h~~~~-~~al~~~~g~~Vl~  105 (376)
                      |+...    -.+++ .+-|+  .|.||.+
T Consensus       231 T~s~~~~~s~~Pv~~~~~lk--pG~hv~~  257 (379)
T PRK06199        231 NSGETGDPSTYPYVKREWVK--PGAFLLM  257 (379)
T ss_pred             cCCCCCCCCcCcEecHHHcC--CCcEEec
Confidence            97422    11222 34678  8899986

>PRK08507 prephenate dehydrogenase; Validated

Probab=97.68  E-value=0.00065  Score=61.53  Aligned_cols=99  Identities=23%  Similarity=0.301  Sum_probs=64.3

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      +||+|||+|.||......+.+.. ...+|+ ++|+++++.+   .+ .+.|+. ..+.+.+++. +  .|+|++|+|+..
T Consensus         1 m~I~iIG~G~mG~sla~~l~~~g-~~~~v~-~~d~~~~~~~---~~-~~~g~~-~~~~~~~~~~-~--aD~Vilavp~~~   70 (275)
T PRK08507          1 MKIGIIGLGLMGGSLGLALKEKG-LISKVY-GYDHNELHLK---KA-LELGLV-DEIVSFEELK-K--CDVIFLAIPVDA   70 (275)
T ss_pred             CEEEEEccCHHHHHHHHHHHhcC-CCCEEE-EEcCCHHHHH---HH-HHCCCC-cccCCHHHHh-c--CCEEEEeCcHHH
Confidence            37999999999999888887651 123544 5799887433   32 345652 3455777754 3  899999999998


Q ss_pred             cHHHHHHHHcCCCCCeEEEecCCCCCHHHHHH
Q 017143           87 HYQILMDIINHPKPHHVLVEKPLCTTVADCKK  118 (376)
Q Consensus        87 h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~  118 (376)
                      ..+.+.+......+. ++++  ++.+.....+
T Consensus        71 ~~~~~~~l~~l~~~~-iv~d--~gs~k~~i~~   99 (275)
T PRK08507         71 IIEILPKLLDIKENT-TIID--LGSTKAKIIE   99 (275)
T ss_pred             HHHHHHHHhccCCCC-EEEE--CccchHHHHH
Confidence            877776654211343 6665  4544444333

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=97.66  E-value=0.00026  Score=64.89  Aligned_cols=111  Identities=15%  Similarity=0.244  Sum_probs=80.1

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHH-HHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQAL-KLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      -.++|||+|..+..|+.++...  -+++=+-|++++++..++.. .+.++++.++...+|.+++++.  .|+|+-+||..
T Consensus       131 ~~laiIGaG~qA~~ql~a~~~v--~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~--aDiIvt~T~s~  206 (330)
T COG2423         131 STLAIIGAGAQARTQLEALKAV--RDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEG--ADIVVTATPST  206 (330)
T ss_pred             cEEEEECCcHHHHHHHHHHHhh--CCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhc--CCEEEEecCCC
Confidence            5799999999999999999999  56888889999999655443 4445666545678999999987  89999999987


Q ss_pred             ccHHHHHH-HHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCC
Q 017143           86 THYQILMD-IINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPD  128 (376)
Q Consensus        86 ~h~~~~~~-al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~  128 (376)
                      .  +++.. =|+  .|-||-.   +..+..+..||-.....+.+
T Consensus       207 ~--Pil~~~~l~--~G~hI~a---iGad~p~k~Eld~e~l~ra~  243 (330)
T COG2423         207 E--PVLKAEWLK--PGTHINA---IGADAPGKRELDPEVLARAD  243 (330)
T ss_pred             C--CeecHhhcC--CCcEEEe---cCCCCcccccCCHHHHHhcC
Confidence            6  44433 477  7888875   33334444444444434433

>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional

Probab=97.66  E-value=0.00068  Score=61.66  Aligned_cols=126  Identities=18%  Similarity=0.128  Sum_probs=86.1

Q ss_pred             CceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143            5 DTVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         5 ~~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      +.-||.+-| +|..|..|.+.+...   +-++||-+.+..-    .+++. .+|+|  +|++++|+.+..++|+++|++|
T Consensus        28 ~~t~v~vqGitg~~g~~h~~~~~~y---gt~iv~GV~Pgkg----g~~v~-~~Gvp--vy~sv~ea~~~~~~D~avI~VP   97 (317)
T PTZ00187         28 KNTKVICQGITGKQGTFHTEQAIEY---GTKMVGGVNPKKA----GTTHL-KHGLP--VFATVKEAKKATGADASVIYVP   97 (317)
T ss_pred             CCCeEEEecCCChHHHHHHHHHHHh---CCcEEEEECCCCC----CceEe-cCCcc--ccCCHHHHhcccCCCEEEEecC
Confidence            346999999 599999999999887   7788988887651    01110 23776  9999999999877999999999


Q ss_pred             CCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCe-EEEEeeccccCHH
Q 017143           84 NMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDI-LVQVGLEYRYMPP  142 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~-~~~v~~~~r~~p~  142 (376)
                      +..-.+.+++|++  +|....+==.-.....+..++.+.+++++++ .+-.|+.--++|.
T Consensus        98 a~~v~dai~Ea~~--aGI~~~ViiteGfpe~d~~~l~~~~~~~~g~rliGPNc~Gii~p~  155 (317)
T PTZ00187         98 PPHAASAIIEAIE--AEIPLVVCITEGIPQHDMVKVKHALLSQNKTRLIGPNCPGIIKPG  155 (317)
T ss_pred             HHHHHHHHHHHHH--cCCCEEEEECCCCchhhHHHHHHHHhhcCCCEEECCCCceEEcch
Confidence            9999999999999  6655433211122233455566665333353 3333333444554

>PRK08655 prephenate dehydrogenase; Provisional

Probab=97.66  E-value=0.00074  Score=65.16  Aligned_cols=114  Identities=16%  Similarity=0.247  Sum_probs=73.5

Q ss_pred             eeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            7 VKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         7 ~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      +||+||| +|.+|......+.+.   +.+++ +++++++   .+.+++.++|+.  ..++.++++.+  .|+|++|+|+.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~---G~~V~-v~~r~~~---~~~~~a~~~gv~--~~~~~~e~~~~--aDvVIlavp~~   69 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEK---GFEVI-VTGRDPK---KGKEVAKELGVE--YANDNIDAAKD--ADIVIISVPIN   69 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHC---CCEEE-EEECChH---HHHHHHHHcCCe--eccCHHHHhcc--CCEEEEecCHH
Confidence            4899998 899999988888774   56765 5788876   455667777864  66788888876  89999999987


Q ss_pred             ccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 017143           86 THYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVG  134 (376)
Q Consensus        86 ~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~  134 (376)
                      .-.+++.+....-....++++-- +....-...|.+.. .. ++.+.-+
T Consensus        70 ~~~~vl~~l~~~l~~~~iViDvs-SvK~~~~~~l~~~~-~~-~~~~V~~  115 (437)
T PRK08655         70 VTEDVIKEVAPHVKEGSLLMDVT-SVKERPVEAMEEYA-PE-GVEILPT  115 (437)
T ss_pred             HHHHHHHHHHhhCCCCCEEEEcc-cccHHHHHHHHHhc-CC-CCEEEEc
Confidence            65555555432101224666532 12244445555554 32 4444333

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=97.63  E-value=0.00028  Score=63.99  Aligned_cols=79  Identities=23%  Similarity=0.332  Sum_probs=53.4

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      +||+|||+|.||......+.+.   +.+|+ ++|++++..+.+   .+ .|.-....++. +.+.+  .|+|++|+|+..
T Consensus         1 m~I~IIG~G~mG~sla~~L~~~---g~~V~-~~d~~~~~~~~a---~~-~g~~~~~~~~~-~~~~~--aDlVilavp~~~   69 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRSL---GHTVY-GVSRRESTCERA---IE-RGLVDEASTDL-SLLKD--CDLVILALPIGL   69 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHHC---CCEEE-EEECCHHHHHHH---HH-CCCcccccCCH-hHhcC--CCEEEEcCCHHH
Confidence            3799999999999988888774   66755 678888743333   22 24311233444 44544  899999999887


Q ss_pred             cHHHHHHHHc
Q 017143           87 HYQILMDIIN   96 (376)
Q Consensus        87 h~~~~~~al~   96 (376)
                      -.+.+.+...
T Consensus        70 ~~~~~~~l~~   79 (279)
T PRK07417         70 LLPPSEQLIP   79 (279)
T ss_pred             HHHHHHHHHH
Confidence            7666655443

>PRK05678 succinyl-CoA synthetase subunit alpha; Validated

Probab=97.63  E-value=0.00057  Score=61.81  Aligned_cols=120  Identities=17%  Similarity=0.177  Sum_probs=82.4

Q ss_pred             CCceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCC--hhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEE
Q 017143            4 NDTVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPH--LQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         4 ~~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      .++-||.|.|. |.+|...+..+.+.   +++.+.-+.+.  .+         +-+|++  .|.+++++-+..++|+++|
T Consensus         6 ~~~~~~~v~~~~~~~g~~~l~~l~~~---g~~~v~pVnp~~~~~---------~v~G~~--~y~sv~dlp~~~~~DlAvi   71 (291)
T PRK05678          6 NKDTKVIVQGITGKQGTFHTEQMLAY---GTNIVGGVTPGKGGT---------TVLGLP--VFNTVAEAVEATGANASVI   71 (291)
T ss_pred             cCCCeEEEeCCCchHHHHHHHHHHHC---CCCEEEEECCCCCCC---------eEeCee--ccCCHHHHhhccCCCEEEE
Confidence            35789999995 77999999888876   34455455554  22         124766  9999999987435899999


Q ss_pred             eCCCCccHHHHHHHHcCCCCCe-EEEecCCCCCHHHHHHHHHHHHhCCCeEEE-EeeccccCH
Q 017143           81 STPNMTHYQILMDIINHPKPHH-VLVEKPLCTTVADCKKVVDAARKRPDILVQ-VGLEYRYMP  141 (376)
Q Consensus        81 ~t~~~~h~~~~~~al~~~~g~~-Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~-v~~~~r~~p  141 (376)
                      ++|...=.+.+.+|.+  +|.. +.+--- ....++.++|.+.|++ +|+.+. .|+.--++|
T Consensus        72 ~vp~~~v~~~l~e~~~--~gvk~avI~s~-Gf~~~~~~~l~~~a~~-~girvlGPNc~Gi~~~  130 (291)
T PRK05678         72 YVPPPFAADAILEAID--AGIDLIVCITE-GIPVLDMLEVKAYLER-KKTRLIGPNCPGIITP  130 (291)
T ss_pred             EcCHHHHHHHHHHHHH--CCCCEEEEECC-CCCHHHHHHHHHHHHH-cCCEEECCCCCccccc
Confidence            9999999999999999  5543 333221 1235666799999954 475553 333333444

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=97.62  E-value=0.001  Score=63.86  Aligned_cols=71  Identities=14%  Similarity=0.176  Sum_probs=49.2

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhh-------------C
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLD-------------S   72 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------------~   72 (376)
                      ++||+|||+|.+|......|++.   +++++ ++|+++++   .+.+. +-.++ ..-.++++++.             .
T Consensus         3 ~~kI~VIGlG~~G~~~A~~La~~---G~~V~-~~D~~~~~---v~~l~-~g~~~-~~e~~l~~~l~~~~~~g~l~~~~~~   73 (415)
T PRK11064          3 FETISVIGLGYIGLPTAAAFASR---QKQVI-GVDINQHA---VDTIN-RGEIH-IVEPDLDMVVKTAVEGGYLRATTTP   73 (415)
T ss_pred             ccEEEEECcchhhHHHHHHHHhC---CCEEE-EEeCCHHH---HHHHH-CCCCC-cCCCCHHHHHHHHhhcCceeeeccc
Confidence            57899999999999998888875   78876 57999884   33332 22232 22235555543             1


Q ss_pred             CCCCEEEEeCCCC
Q 017143           73 GLCDVVVVSTPNM   85 (376)
Q Consensus        73 ~~~D~V~i~t~~~   85 (376)
                      .+.|+|+||.|+.
T Consensus        74 ~~aDvvii~vptp   86 (415)
T PRK11064         74 EPADAFLIAVPTP   86 (415)
T ss_pred             ccCCEEEEEcCCC
Confidence            2589999999985

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=97.62  E-value=0.00066  Score=62.56  Aligned_cols=106  Identities=21%  Similarity=0.340  Sum_probs=73.3

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHH----------------HHHHhcCCCCCccCCHHHH
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQAL----------------KLANAFDWPLKVFPGHQEL   69 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~   69 (376)
                      ..+|||||+|.+|......++..   +++++| +|.++.+.++..                +..+.-.  .+.+++.+++
T Consensus         9 ~~~I~ViGLGYVGLPlA~~fA~~---G~~ViG-~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~--lraTtd~~~l   82 (436)
T COG0677           9 SATIGVIGLGYVGLPLAAAFASA---GFKVIG-VDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGK--LRATTDPEEL   82 (436)
T ss_pred             ceEEEEEccccccHHHHHHHHHc---CCceEe-EeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCC--ceEecChhhc
Confidence            48999999999999887777774   999998 589887543322                1111112  2466777666


Q ss_pred             hhCCCCCEEEEeCCCCcc-------------HHHHHHHHcCCCCCeEEEec--CCCCCHHHHHHHHHH
Q 017143           70 LDSGLCDVVVVSTPNMTH-------------YQILMDIINHPKPHHVLVEK--PLCTTVADCKKVVDA  122 (376)
Q Consensus        70 l~~~~~D~V~i~t~~~~h-------------~~~~~~al~~~~g~~Vl~EK--P~a~~~~e~~~l~~~  122 (376)
                      -   ..|+.+||.|+..-             .+.+...|+  .|--|.+|-  |..+|-+-++-|.+.
T Consensus        83 ~---~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~--kG~LVIlEST~~PGTTe~v~~plle~  145 (436)
T COG0677          83 K---ECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLK--KGDLVILESTTPPGTTEEVVKPLLEE  145 (436)
T ss_pred             c---cCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcC--CCCEEEEecCCCCCcHHHHHHHHHhh
Confidence            4   37999999886432             223344588  899999996  666677777777665

>PLN02712 arogenate dehydrogenase

Probab=97.61  E-value=0.00024  Score=71.94  Aligned_cols=77  Identities=17%  Similarity=0.261  Sum_probs=57.4

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      +++||||||+|.||..++..+.+.   +.+|+ ++|++..    . +.+.++|+.  .+++.++++.. ..|+|++|+|+
T Consensus       368 ~~~kIgIIGlG~mG~slA~~L~~~---G~~V~-~~dr~~~----~-~~a~~~Gv~--~~~~~~el~~~-~aDvVILavP~  435 (667)
T PLN02712        368 SKLKIAIVGFGNFGQFLAKTMVKQ---GHTVL-AYSRSDY----S-DEAQKLGVS--YFSDADDLCEE-HPEVILLCTSI  435 (667)
T ss_pred             CCCEEEEEecCHHHHHHHHHHHHC---cCEEE-EEECChH----H-HHHHHcCCe--EeCCHHHHHhc-CCCEEEECCCh
Confidence            568999999999999999988774   67877 5677643    1 224456754  67899998864 37999999998


Q ss_pred             CccHHHHHH
Q 017143           85 MTHYQILMD   93 (376)
Q Consensus        85 ~~h~~~~~~   93 (376)
                      ..-.+++.+
T Consensus       436 ~~~~~vi~~  444 (667)
T PLN02712        436 LSTEKVLKS  444 (667)
T ss_pred             HHHHHHHHH
Confidence            655555544

>PLN02712 arogenate dehydrogenase

Probab=97.61  E-value=0.00071  Score=68.53  Aligned_cols=77  Identities=22%  Similarity=0.280  Sum_probs=57.4

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      ++++|+|||+|.||..++..+.+.   +.+|++ +|++...     +.+.++|+.  .+++.++++.. +.|+|++|+|+
T Consensus        51 ~~~kIgIIG~G~mG~slA~~L~~~---G~~V~~-~dr~~~~-----~~A~~~Gv~--~~~d~~e~~~~-~aDvViLavP~  118 (667)
T PLN02712         51 TQLKIAIIGFGNYGQFLAKTLISQ---GHTVLA-HSRSDHS-----LAARSLGVS--FFLDPHDLCER-HPDVILLCTSI  118 (667)
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHC---CCEEEE-EeCCHHH-----HHHHHcCCE--EeCCHHHHhhc-CCCEEEEcCCH
Confidence            468999999999999999988875   678765 6666431     235567864  68889987754 38999999998


Q ss_pred             CccHHHHHH
Q 017143           85 MTHYQILMD   93 (376)
Q Consensus        85 ~~h~~~~~~   93 (376)
                      ..-.+++.+
T Consensus       119 ~~~~~vl~~  127 (667)
T PLN02712        119 ISTENVLKS  127 (667)
T ss_pred             HHHHHHHHh
Confidence            755555444

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=97.61  E-value=0.00032  Score=64.40  Aligned_cols=76  Identities=20%  Similarity=0.215  Sum_probs=54.3

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ..+|+|||+|.+|..++..+...   +++++...+++.++   .+++. ++|+.  .. +.++++++  .|+|++++|++
T Consensus         3 ~kkIgiIG~G~mG~AiA~~L~~s---G~~Viv~~~~~~~~---~~~a~-~~Gv~--~~-s~~ea~~~--ADiVvLaVpp~   70 (314)
T TIGR00465         3 GKTVAIIGYGSQGHAQALNLRDS---GLNVIVGLRKGGAS---WKKAT-EDGFK--VG-TVEEAIPQ--ADLIMNLLPDE   70 (314)
T ss_pred             cCEEEEEeEcHHHHHHHHHHHHC---CCeEEEEECcChhh---HHHHH-HCCCE--EC-CHHHHHhc--CCEEEEeCCcH
Confidence            35799999999999999998875   67766555554442   22322 55764  43 57788766  89999999998


Q ss_pred             ccHHHHHH
Q 017143           86 THYQILMD   93 (376)
Q Consensus        86 ~h~~~~~~   93 (376)
                      .+...+.+
T Consensus        71 ~~~~~v~~   78 (314)
T TIGR00465        71 VQHEVYEA   78 (314)
T ss_pred             hHHHHHHH
Confidence            66665554

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK05722 glucose-6-phosphate 1-dehydrogenase; Validated

Probab=97.61  E-value=0.00064  Score=65.91  Aligned_cols=122  Identities=18%  Similarity=0.268  Sum_probs=79.3

Q ss_pred             CCCceeEEEEeC-ChhhH-HHHHHhhhhc-----CCCcEEEEEeCCChhhH---HHH-----------------HHHHHh
Q 017143            3 ANDTVKYGIIGM-GMMGR-EHFINLHHLR-----SQGVSVVCIADPHLQSR---QQA-----------------LKLANA   55 (376)
Q Consensus         3 ~~~~~~v~iiG~-G~~g~-~~~~~~~~~~-----~~~~~~~~v~d~~~~~~---~~~-----------------~~~~~~   55 (376)
                      .+.+..+.|+|+ |-.++ ..+|+|.++.     ++++.|+|+.-.+-+..   +..                 .+|.+.
T Consensus         6 ~~~~~~~vifGatGDLa~rkL~PaL~~L~~~~~lp~~~~IiG~aR~~~~~e~~r~~v~~~l~~~~~~~~~~~~~~~F~~~   85 (495)
T PRK05722          6 TAEPCDLVIFGATGDLARRKLLPALYNLYKAGLLPEDFRIIGVARRDWSDEDFREVVREALKEFARTPFDEEVWERFLSR   85 (495)
T ss_pred             CCCCeEEEEeCCchHHhHhhHHHHHHHHHHcCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHhccCccCHHHHHHHHhh
Confidence            345688999995 66665 5778876662     25899999874432211   111                 112221


Q ss_pred             c-----CCC-CCccCCHHHHhhC-------CCCCEEEEeCCCCccHHHHHHHHcCCC-----CCeEEEecCCCCCHHHHH
Q 017143           56 F-----DWP-LKVFPGHQELLDS-------GLCDVVVVSTPNMTHYQILMDIINHPK-----PHHVLVEKPLCTTVADCK  117 (376)
Q Consensus        56 ~-----~~~-~~~~~~~~~~l~~-------~~~D~V~i~t~~~~h~~~~~~al~~~~-----g~~Vl~EKP~a~~~~e~~  117 (376)
                      .     ++. ...|..+.+.+.+       +.-.++++++||..+..++...-++|.     ...|.+|||++.+++.|+
T Consensus        86 ~~Y~~~d~~~~e~y~~L~~~L~~~e~~~~~~~nrlFYLAvPPs~F~~I~~~L~~~gl~~~~g~~RIVIEKPFG~DL~SA~  165 (495)
T PRK05722         86 LYYVSGDVTDPESYERLKELLEELDEERGTGGNRVFYLATPPSLFGTICENLAAAGLNEGGGWRRVVIEKPFGHDLASAR  165 (495)
T ss_pred             CEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCCceEEEEECCHHHHHHHHHHHHHhCCCcCCCCcEEEEECCCCCCHHHHH
Confidence            1     011 1223344455543       234689999999999999988777331     279999999999999999


Q ss_pred             HHHHHHH
Q 017143          118 KVVDAAR  124 (376)
Q Consensus       118 ~l~~~a~  124 (376)
                      +|-+...
T Consensus       166 ~Ln~~l~  172 (495)
T PRK05722        166 ELNDQVG  172 (495)
T ss_pred             HHHHHHH
Confidence            9998884

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.55  E-value=0.0011  Score=60.32  Aligned_cols=104  Identities=12%  Similarity=0.178  Sum_probs=64.2

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH--------hcCCC-----------CCccCCH
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN--------AFDWP-----------LKVFPGH   66 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~--------~~~~~-----------~~~~~~~   66 (376)
                      ..||+|||+|.+|......++..   +.+|+ ++|++++..+++.+..+        ...+.           +...+|+
T Consensus         3 ~~kIaViGaG~mG~~iA~~la~~---G~~V~-l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~   78 (287)
T PRK08293          3 IKNVTVAGAGVLGSQIAFQTAFH---GFDVT-IYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDL   78 (287)
T ss_pred             ccEEEEECCCHHHHHHHHHHHhc---CCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCH
Confidence            35899999999999888777664   66754 78999886655543211        11110           2356788


Q ss_pred             HHHhhCCCCCEEEEeCCCCc--cHHHHHHHHcCCCCCeEEEecCCCCCHHH
Q 017143           67 QELLDSGLCDVVVVSTPNMT--HYQILMDIINHPKPHHVLVEKPLCTTVAD  115 (376)
Q Consensus        67 ~~~l~~~~~D~V~i~t~~~~--h~~~~~~al~~~~g~~Vl~EKP~a~~~~e  115 (376)
                      ++++++  .|+|+.|.|...  ..++..+..+......+++--.-+..+.+
T Consensus        79 ~~a~~~--aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~  127 (287)
T PRK08293         79 AEAVKD--ADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQ  127 (287)
T ss_pred             HHHhcC--CCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHH
Confidence            888866  899999999773  33433333221112345555444445544

>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha

Probab=97.54  E-value=0.00097  Score=60.43  Aligned_cols=84  Identities=15%  Similarity=0.163  Sum_probs=68.4

Q ss_pred             CceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143            5 DTVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         5 ~~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      +.-||.|.| +|..|..|.+.+...   +-++++-+.+...    ..+   -+|++  +|.+++|+.+.+++|+++|++|
T Consensus        11 ~~~~v~~~gi~~~~~~~~~~~~~~y---gt~~~~gV~p~~~----~~~---i~G~~--~y~sv~dlp~~~~~DlAvI~vP   78 (300)
T PLN00125         11 KNTRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKG----GTE---HLGLP--VFNTVAEAKAETKANASVIYVP   78 (300)
T ss_pred             CCCeEEEecCCCHHHHHHHHHHHHh---CCcEEEEECCCCC----Cce---EcCee--ccCCHHHHhhccCCCEEEEecC
Confidence            357999999 699999999999888   7778887777631    001   24776  9999999997656899999999


Q ss_pred             CCccHHHHHHHHcCCCCCe
Q 017143           84 NMTHYQILMDIINHPKPHH  102 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~  102 (376)
                      ...=.+.+.+|++  +|.+
T Consensus        79 a~~v~~al~e~~~--~Gvk   95 (300)
T PLN00125         79 PPFAAAAILEAME--AELD   95 (300)
T ss_pred             HHHHHHHHHHHHH--cCCC
Confidence            9999999999999  6665

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.54  E-value=0.0012  Score=61.05  Aligned_cols=104  Identities=16%  Similarity=0.252  Sum_probs=64.3

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHH-HHhcCC------------CCCccCCHHHHhhC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKL-ANAFDW------------PLKVFPGHQELLDS   72 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~-~~~~~~------------~~~~~~~~~~~l~~   72 (376)
                      ..||+|||+|.+|......+...   +.+|+ ++|++++..+++.+. ....+.            .+...+++++++++
T Consensus         4 ~~~I~vIGaG~mG~~iA~~l~~~---g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   79 (311)
T PRK06130          4 IQNLAIIGAGTMGSGIAALFARK---GLQVV-LIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSG   79 (311)
T ss_pred             ccEEEEECCCHHHHHHHHHHHhC---CCeEE-EEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhcc
Confidence            35799999999999988888764   67766 578988866554431 111121            01345678887765


Q ss_pred             CCCCEEEEeCCCCcc--HHHHHHHHcCCCCCeEEEecCCCCCHHH
Q 017143           73 GLCDVVVVSTPNMTH--YQILMDIINHPKPHHVLVEKPLCTTVAD  115 (376)
Q Consensus        73 ~~~D~V~i~t~~~~h--~~~~~~al~~~~g~~Vl~EKP~a~~~~e  115 (376)
                        .|+|++|+|+..+  ..+..+.-....+..+++--..+.+..+
T Consensus        80 --aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~  122 (311)
T PRK06130         80 --ADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITA  122 (311)
T ss_pred             --CCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHH
Confidence              8999999999864  2333222110023446655555555443

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=97.53  E-value=0.00031  Score=56.90  Aligned_cols=133  Identities=18%  Similarity=0.211  Sum_probs=76.8

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      .-+|+|||.|..|+.|..+|+..   +++|+ |..+...   +..+.+++-|+.  + .+++|+.+.  .|+|++.+|+.
T Consensus         4 ~k~IAViGyGsQG~a~AlNLrDS---G~~V~-Vglr~~s---~s~~~A~~~Gf~--v-~~~~eAv~~--aDvV~~L~PD~   71 (165)
T PF07991_consen    4 GKTIAVIGYGSQGHAHALNLRDS---GVNVI-VGLREGS---ASWEKAKADGFE--V-MSVAEAVKK--ADVVMLLLPDE   71 (165)
T ss_dssp             TSEEEEES-SHHHHHHHHHHHHC---C-EEE-EEE-TTC---HHHHHHHHTT-E--C-CEHHHHHHC---SEEEE-S-HH
T ss_pred             CCEEEEECCChHHHHHHHHHHhC---CCCEE-EEecCCC---cCHHHHHHCCCe--e-ccHHHHHhh--CCEEEEeCChH
Confidence            35899999999999999888875   88877 4444443   233445566875  4 468889887  89999999999


Q ss_pred             ccHHHH----HHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEE
Q 017143           86 THYQIL----MDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMV  161 (376)
Q Consensus        86 ~h~~~~----~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~  161 (376)
                      .|.++-    ...|+  .|+.+..--.+...    -.+++-   ..++.+.+-...--.+.+   |+...+|. |-+-.+
T Consensus        72 ~q~~vy~~~I~p~l~--~G~~L~fahGfni~----~~~i~p---p~~vdV~mvAPKgpG~~v---R~~y~~G~-Gvp~l~  138 (165)
T PF07991_consen   72 VQPEVYEEEIAPNLK--PGATLVFAHGFNIH----YGLIKP---PKDVDVIMVAPKGPGHLV---RREYVEGR-GVPALI  138 (165)
T ss_dssp             HHHHHHHHHHHHHS---TT-EEEESSSHHHH----CTTS------TTSEEEEEEESSSCHHH---HHHHHCCT-S--EEE
T ss_pred             HHHHHHHHHHHhhCC--CCCEEEeCCcchhh----cCcccC---CCCCeEEEEecCCCChHH---HHHHHcCC-CceEEE
Confidence            997775    34578  67666655444321    112222   235555555555444444   45555555 666666


Q ss_pred             EE
Q 017143          162 AI  163 (376)
Q Consensus       162 ~~  163 (376)
                      .+
T Consensus       139 AV  140 (165)
T PF07991_consen  139 AV  140 (165)
T ss_dssp             EE
T ss_pred             EE
Confidence            55

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=97.52  E-value=0.0006  Score=61.90  Aligned_cols=73  Identities=23%  Similarity=0.305  Sum_probs=54.5

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      --+|||||+|.+|+.++..++..   +++|++ +++...    ..+.+...|+.  . .+++++++.  .|+|++++|..
T Consensus        16 gKtVGIIG~GsIG~amA~nL~d~---G~~ViV-~~r~~~----s~~~A~~~G~~--v-~sl~Eaak~--ADVV~llLPd~   82 (335)
T PRK13403         16 GKTVAVIGYGSQGHAQAQNLRDS---GVEVVV-GVRPGK----SFEVAKADGFE--V-MSVSEAVRT--AQVVQMLLPDE   82 (335)
T ss_pred             cCEEEEEeEcHHHHHHHHHHHHC---cCEEEE-EECcch----hhHHHHHcCCE--E-CCHHHHHhc--CCEEEEeCCCh
Confidence            36899999999999999998875   899875 444322    33344555754  3 389999988  79999999987


Q ss_pred             ccHHHH
Q 017143           86 THYQIL   91 (376)
Q Consensus        86 ~h~~~~   91 (376)
                      .+..+.
T Consensus        83 ~t~~V~   88 (335)
T PRK13403         83 QQAHVY   88 (335)
T ss_pred             HHHHHH
Confidence            665554

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=97.51  E-value=0.00056  Score=63.50  Aligned_cols=71  Identities=21%  Similarity=0.306  Sum_probs=50.8

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc-------C--C--CCCccCCHHHHhhCCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF-------D--W--PLKVFPGHQELLDSGLC   75 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~-------~--~--~~~~~~~~~~~l~~~~~   75 (376)
                      +||+|||+|.+|......+.+.   +.++ .+++++++.   .+++.++.       +  .  .+...++.++.++.  .
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~---g~~V-~~~~r~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~   72 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARN---GHDV-TLWARDPEQ---AAEINADRENPRYLPGIKLPDNLRATTDLAEALAD--A   72 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC---CCEE-EEEECCHHH---HHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhC--C
Confidence            5899999999999988888774   6775 578998874   44444321       0  0  12345678877765  8


Q ss_pred             CEEEEeCCCCc
Q 017143           76 DVVVVSTPNMT   86 (376)
Q Consensus        76 D~V~i~t~~~~   86 (376)
                      |+|++|+|+..
T Consensus        73 D~vi~~v~~~~   83 (325)
T PRK00094         73 DLILVAVPSQA   83 (325)
T ss_pred             CEEEEeCCHHH
Confidence            99999999853

>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=97.50  E-value=0.0098  Score=55.27  Aligned_cols=208  Identities=14%  Similarity=0.092  Sum_probs=130.3

Q ss_pred             EEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC---------------------CCcc---CC
Q 017143           11 IIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP---------------------LKVF---PG   65 (376)
Q Consensus        11 iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~---------------------~~~~---~~   65 (376)
                      |+| +|.+|+.-+.-+++++ ..|+|++++..+.-  +.+.+.+++|.-.                     ++++   +.
T Consensus         1 ILGsTGSIG~qtLdVi~~~~-d~f~v~~Laa~~n~--~~L~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~~~   77 (383)
T PRK12464          1 ILGSTGSIGTSALDVVSAHP-EHFKVVGLTANYNI--ELLEQQIKRFQPRIVSVADKELADTLRTRLSANTSKITYGTDG   77 (383)
T ss_pred             CCccccHHHHHHHHHHHhCc-cccEEEEEECCCCH--HHHHHHHHHhCCCEEEEcCHHHHHHHHHhccCCCcEEEECHHH
Confidence            467 5999999888887763 57999999875543  2455555554322                     0111   13


Q ss_pred             HHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHH-HHHHHHHHhCCCeEEEEeeccccCHHHH
Q 017143           66 HQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADC-KKVVDAARKRPDILVQVGLEYRYMPPVA  144 (376)
Q Consensus        66 ~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~-~~l~~~a~~~~~~~~~v~~~~r~~p~~~  144 (376)
                      +.++.+.+++|.|+.+..-..=......|++  +||.|.+.--=  ++--+ .-+.+.++++ +..+..-     +....
T Consensus        78 l~~l~~~~~~D~vv~AivG~aGL~pt~~Ai~--~gk~iaLANKE--SLV~aG~li~~~~~~~-~~~iiPV-----DSEHs  147 (383)
T PRK12464         78 LIAVATHPGSDLVLSSVVGAAGLLPTIEALK--AKKDIALANKE--TLVAAGHIVTDLAKQN-GCRLIPV-----DSEHS  147 (383)
T ss_pred             HHHHHcCCCCCEEEEhhhcHhhHHHHHHHHH--CCCcEEEechh--hHhhhHHHHHHHHHHc-CCeEEee-----chhHH
Confidence            4556666779999999998888899999999  88888774331  22223 3344566444 5443332     34455


Q ss_pred             HHHHHHHcCCCCceEEEEEeeccCCcccc---------------cCccccccccC--CcccccccccHHHHHHHHhCCCC
Q 017143          145 KLIQIVKSGSIGQVKMVAIREHRFPFLVK---------------VNDWNRFNENT--GGTLVEKCCHFFDLMRLFVGSNP  207 (376)
Q Consensus       145 ~~k~~i~~g~iG~i~~~~~~~~~~~~~~~---------------~~~w~~~~~~~--gG~l~d~g~H~ld~~~~l~G~~~  207 (376)
                      .+-|.++.+...+|..+..+-..+++...               -++|..-++-+  .-.|++-|--.+ =+.||||-++
T Consensus       148 AIfQ~L~~~~~~~v~kiiLTASGGpFr~~~~e~l~~vT~~~AL~HP~W~MG~KITIDSATmmNKglEvI-EA~~LF~i~~  226 (383)
T PRK12464        148 AIFQCLNGENNKEIDKLIVTASGGAFRDKTREEMATLTAKDALKHPNWLMGAKLTIDSATLMNKGFEVI-EAHWLFDIPY  226 (383)
T ss_pred             HHHHHccCCCcccccEEEEECCCcccCCCCHHHHhCCCHHHHhcCCCCcCCCeeeeehHhhhhhhHHHH-HHHHHcCCCH
Confidence            56666665444557777776666665431               35776554422  334555543333 3578999777


Q ss_pred             eEEEEecccccccCccccCCCCCcccccEEEEEEecCCcEE
Q 017143          208 MRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENGSRG  248 (376)
Q Consensus       208 ~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~G~~~  248 (376)
                      .++....+.                ....+.+++|.||.+.
T Consensus       227 d~I~vvIHP----------------qSiVHsmVef~DGSv~  251 (383)
T PRK12464        227 EKIDVLIHK----------------ESIIHSLVEFIDGSVL  251 (383)
T ss_pred             HHeEEEECC----------------CCceeEEEEEcCccEE
Confidence            777776443                2458899999999664

>TIGR02130 dapB_plant dihydrodipicolinate reductase

Probab=97.50  E-value=0.0028  Score=56.43  Aligned_cols=130  Identities=9%  Similarity=0.049  Sum_probs=88.1

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEE-eCCChhhHHHHHHHHHhcCCCC----CccCCHHHHhhCCCCC-EEE
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCI-ADPHLQSRQQALKLANAFDWPL----KVFPGHQELLDSGLCD-VVV   79 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v-~d~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~D-~V~   79 (376)
                      +||.|.|+ |.||+..+.++.+   ++++|++. +|+..... ...++... ++++    ..+++++++++. .+| +++
T Consensus         1 ~~V~V~Ga~GkMG~~v~~av~~---~~~~Lv~~~~~~~~~~~-~~~~~~g~-~v~v~~~~~~~~~l~~~~~~-~~d~VvI   74 (275)
T TIGR02130         1 IQIMVNGCPGKMGKAVAEAADA---AGLEIVPTSFGGEEEAE-NEAEVAGK-EILLHGPSEREARIGEVFAK-YPELICI   74 (275)
T ss_pred             CeEEEeCCCChHHHHHHHHHhc---CCCEEEeeEcccccccc-chhhhccc-ceeeeccccccccHHHHHhh-cCCEEEE
Confidence            58999996 8999998888665   59999998 77543211 12223221 4441    228999999965 388 889


Q ss_pred             EeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHH
Q 017143           80 VSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVK  151 (376)
Q Consensus        80 i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~  151 (376)
                      -.|.|+.-.+.+..|++  +|+++.+=-.. .+.++.++|.++    .++.+.+..|  |+-.+..+.++++
T Consensus        75 DFT~P~~~~~n~~~~~~--~gv~~ViGTTG-~~~~~~~~l~~~----~~i~~l~apN--fSiGv~ll~~~~~  137 (275)
T TIGR02130        75 DYTHPSAVNDNAAFYGK--HGIPFVMGTTG-GDREALAKLVAD----AKHPAVIAPN--MAKQIVAFLAAIE  137 (275)
T ss_pred             ECCChHHHHHHHHHHHH--CCCCEEEcCCC-CCHHHHHHHHHh----cCCCEEEECc--ccHHHHHHHHHHH
Confidence            99999999999999999  88998875553 566676666433    2455554444  4445555555553

This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=97.49  E-value=0.00038  Score=63.52  Aligned_cols=126  Identities=16%  Similarity=0.115  Sum_probs=81.2

Q ss_pred             CceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143            5 DTVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         5 ~~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      +|+|||||| +|..|...++.|..+  |.++++++......              .  . .+.++.++  ++|+|+.|+|
T Consensus         1 ~~~~VaIvGAtGy~G~eLlrlL~~h--p~~~l~~~~s~~~~--------------~--~-~~~~~~~~--~~DvvFlalp   59 (313)
T PRK11863          1 MKPKVFIDGEAGTTGLQIRERLAGR--SDIELLSIPEAKRK--------------D--A-AARRELLN--AADVAILCLP   59 (313)
T ss_pred             CCcEEEEECCCCHHHHHHHHHHhcC--CCeEEEEEecCCCC--------------c--c-cCchhhhc--CCCEEEECCC
Confidence            369999999 588999999999999  89999999754322              1  1 22334444  3899999999


Q ss_pred             CCccHHHHHHHHcCCCCCeEEE---------ecCCCCCHHHHH-HHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcC
Q 017143           84 NMTHYQILMDIINHPKPHHVLV---------EKPLCTTVADCK-KVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSG  153 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~---------EKP~a~~~~e~~-~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g  153 (376)
                      +....+++.++.+  +|+.|+=         +-|...  .|.. +-.+.. +..+  +..+..+.-......++-+++.|
T Consensus        60 ~~~s~~~~~~~~~--~g~~VIDlSadfRl~~~~~ygl--PEvn~~~~~~i-~~~~--~IanPgC~~Ta~~laL~PL~~~~  132 (313)
T PRK11863         60 DDAAREAVALIDN--PATRVIDASTAHRTAPGWVYGF--PELAPGQRERI-AAAK--RVANPGCYPTGAIALLRPLVDAG  132 (313)
T ss_pred             HHHHHHHHHHHHh--CCCEEEECChhhhcCCCCeEEc--CccCHHHHHHh-hcCC--eEEcCCcHHHHHHHHHHHHHHcC
Confidence            9999999999988  7765542         222222  1110 011122 1223  33333333345666788888888


Q ss_pred             CCCce
Q 017143          154 SIGQV  158 (376)
Q Consensus       154 ~iG~i  158 (376)
                      .+-++
T Consensus       133 li~~~  137 (313)
T PRK11863        133 LLPAD  137 (313)
T ss_pred             CcccC
Confidence            77553

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=97.48  E-value=0.0032  Score=58.30  Aligned_cols=110  Identities=23%  Similarity=0.250  Sum_probs=70.6

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHH------------HHHHhcCCC--CCccCCHHHHhhC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQAL------------KLANAFDWP--LKVFPGHQELLDS   72 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~------------~~~~~~~~~--~~~~~~~~~~l~~   72 (376)
                      |||.|||+|..|......++++   +-+|++ +|.++++.+...            ++.++..-.  .+.++|+++.+++
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~---GHeVv~-vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~   76 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAEL---GHEVVC-VDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKD   76 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHc---CCeEEE-EeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhc
Confidence            6899999999999888888887   778886 699998654332            222221111  3456788888877


Q ss_pred             CCCCEEEEeCCCCcc------HHH----HHHHHcCCCCCeEEEec---CCCCCHHHHHHHHHHH
Q 017143           73 GLCDVVVVSTPNMTH------YQI----LMDIINHPKPHHVLVEK---PLCTTVADCKKVVDAA  123 (376)
Q Consensus        73 ~~~D~V~i~t~~~~h------~~~----~~~al~~~~g~~Vl~EK---P~a~~~~e~~~l~~~a  123 (376)
                        .|+++||+|+...      ..+    +....+.-.+.||++-|   |+. +.++.++.+...
T Consensus        77 --adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvG-t~~~v~~~i~~~  137 (414)
T COG1004          77 --ADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVG-TTEEVRAKIREE  137 (414)
T ss_pred             --CCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCC-chHHHHHHHHhh
Confidence              6888888775432      222    22222222456999999   444 555555555555

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=97.47  E-value=0.00077  Score=58.81  Aligned_cols=96  Identities=20%  Similarity=0.257  Sum_probs=60.9

Q ss_pred             eeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh-------cCCCCCc-cCCHHHHhhCCCCCE
Q 017143            7 VKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA-------FDWPLKV-FPGHQELLDSGLCDV   77 (376)
Q Consensus         7 ~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~l~~~~~D~   77 (376)
                      |||+||| +|.+|......+.+.   +.+|+ ++++++++.   ++++++       .++.... ..+..+.+++  .|+
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~---G~~V~-v~~r~~~~~---~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~--aDv   71 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKA---GNKII-IGSRDLEKA---EEAAAKALEELGHGGSDIKVTGADNAEAAKR--ADV   71 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhC---CCEEE-EEEcCHHHH---HHHHHHHHhhccccCCCceEEEeChHHHHhc--CCE
Confidence            4799997 899999988888774   56765 568888743   333332       1322111 2355667765  799


Q ss_pred             EEEeCCCCccHHHHHHHHcCCCCC-eEEEecCCCC
Q 017143           78 VVVSTPNMTHYQILMDIINHPKPH-HVLVEKPLCT  111 (376)
Q Consensus        78 V~i~t~~~~h~~~~~~al~~~~g~-~Vl~EKP~a~  111 (376)
                      |++++|++...+.+.+......++ -|-|-+|+..
T Consensus        72 Vilavp~~~~~~~l~~l~~~l~~~vvI~~~ngi~~  106 (219)
T TIGR01915        72 VILAVPWDHVLKTLESLRDELSGKLVISPVVPLAS  106 (219)
T ss_pred             EEEECCHHHHHHHHHHHHHhccCCEEEEeccCcee
Confidence            999999998877765542211233 2335567653

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=97.46  E-value=0.00049  Score=62.56  Aligned_cols=91  Identities=19%  Similarity=0.336  Sum_probs=62.5

Q ss_pred             CceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcC-CC--C-CccC--CHHHHhhCCCCCE
Q 017143            5 DTVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFD-WP--L-KVFP--GHQELLDSGLCDV   77 (376)
Q Consensus         5 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~-~~--~-~~~~--~~~~~l~~~~~D~   77 (376)
                      +|+||+|||. |..|...++.|..+  |++++..+..+..    +-+.+.+.+. ..  . ..+.  +.+++ ...++|+
T Consensus         1 ~~~kV~IvGasGYtG~EL~rlL~~H--p~ve~~~~ss~~~----~g~~~~~~~p~l~g~~~l~~~~~~~~~~-~~~~~Dv   73 (349)
T COG0002           1 MMIKVGIVGASGYTGLELLRLLAGH--PDVELILISSRER----AGKPVSDVHPNLRGLVDLPFQTIDPEKI-ELDECDV   73 (349)
T ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC--CCeEEEEeechhh----cCCchHHhCcccccccccccccCChhhh-hcccCCE
Confidence            3699999995 88899999999999  9999666554431    2233333321 11  0 1111  33444 4445899


Q ss_pred             EEEeCCCCccHHHHHHHHcCCCCCeEE
Q 017143           78 VVVSTPNMTHYQILMDIINHPKPHHVL  104 (376)
Q Consensus        78 V~i~t~~~~h~~~~~~al~~~~g~~Vl  104 (376)
                      |++|+|+..-.+++.+.++  .|..|+
T Consensus        74 vFlalPhg~s~~~v~~l~~--~g~~VI   98 (349)
T COG0002          74 VFLALPHGVSAELVPELLE--AGCKVI   98 (349)
T ss_pred             EEEecCchhHHHHHHHHHh--CCCeEE
Confidence            9999999999999999998  777643

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=97.46  E-value=0.0014  Score=62.95  Aligned_cols=103  Identities=23%  Similarity=0.387  Sum_probs=62.2

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC---------------CCccCCHHH
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP---------------LKVFPGHQE   68 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~   68 (376)
                      -+++||+|||+|.+|..+...+++    +++|++ +|+++++   .+++.+  |..               ....++.+ 
T Consensus         4 ~~~mkI~vIGlGyvGlpmA~~la~----~~~V~g-~D~~~~~---ve~l~~--G~~~~~e~~~~~l~~~g~l~~t~~~~-   72 (425)
T PRK15182          4 IDEVKIAIIGLGYVGLPLAVEFGK----SRQVVG-FDVNKKR---ILELKN--GVDVNLETTEEELREARYLKFTSEIE-   72 (425)
T ss_pred             CCCCeEEEECcCcchHHHHHHHhc----CCEEEE-EeCCHHH---HHHHHC--cCCCCCCCCHHHHHhhCCeeEEeCHH-
Confidence            346899999999999988777554    478764 8999984   444441  111               12233443 


Q ss_pred             HhhCCCCCEEEEeCCCCccH------HHHH-------HHHcCCCCCeEEEecCC--CCCHHHHHHHHH
Q 017143           69 LLDSGLCDVVVVSTPNMTHY------QILM-------DIINHPKPHHVLVEKPL--CTTVADCKKVVD  121 (376)
Q Consensus        69 ~l~~~~~D~V~i~t~~~~h~------~~~~-------~al~~~~g~~Vl~EKP~--a~~~~e~~~l~~  121 (376)
                      .+++  .|+++||.|+..+.      +.+.       +.++  .|.-|+.+.-+  .++.+-++.+.+
T Consensus        73 ~~~~--advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~--~g~lVI~~STv~pgtt~~~~~~~l~  136 (425)
T PRK15182         73 KIKE--CNFYIITVPTPINTYKQPDLTPLIKASETVGTVLN--RGDIVVYESTVYPGCTEEECVPILA  136 (425)
T ss_pred             HHcC--CCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcC--CCCEEEEecCCCCcchHHHHHHHHH
Confidence            4544  89999999987432      3333       2345  56666666533  333333444444

>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []

Probab=97.45  E-value=0.0013  Score=51.55  Aligned_cols=92  Identities=17%  Similarity=0.273  Sum_probs=64.9

Q ss_pred             EEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-----------------------CCccC
Q 017143            9 YGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-----------------------LKVFP   64 (376)
Q Consensus         9 v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-----------------------~~~~~   64 (376)
                      |+|+| +|.+|+.-+.-+++++ +.|+|+++...+.-  ++..+.+++|+.+                       ++++.
T Consensus         1 i~ILGsTGSIG~qtLdVi~~~~-d~f~v~~Lsa~~n~--~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~   77 (129)
T PF02670_consen    1 IAILGSTGSIGTQTLDVIRKHP-DKFEVVALSAGSNI--EKLAEQAREFKPKYVVIADEEAYEELKKALPSKGPGIEVLS   77 (129)
T ss_dssp             EEEESTTSHHHHHHHHHHHHCT-TTEEEEEEEESSTH--HHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEE
T ss_pred             CEEEcCCcHHHHHHHHHHHhCC-CceEEEEEEcCCCH--HHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhhcCCCCEEEe
Confidence            68999 5999999999888883 58999999875432  2444444444322                       12222


Q ss_pred             ---CHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEE
Q 017143           65 ---GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLV  105 (376)
Q Consensus        65 ---~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~  105 (376)
                         .+.++.+.+++|.|+.+..-..=......|++  +||.|.+
T Consensus        78 G~~~l~~~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~--~gk~iaL  119 (129)
T PF02670_consen   78 GPEGLEELAEEPEVDIVVNAIVGFAGLKPTLAAIK--AGKDIAL  119 (129)
T ss_dssp             SHHHHHHHHTHTT-SEEEE--SSGGGHHHHHHHHH--TTSEEEE
T ss_pred             ChHHHHHHhcCCCCCEEEEeCcccchHHHHHHHHH--CCCeEEE
Confidence               24466666789999999999999999999999  8998875

In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=97.44  E-value=0.0016  Score=59.94  Aligned_cols=111  Identities=23%  Similarity=0.305  Sum_probs=68.2

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHH--------HHHhcCCC-----------CCccCCHH
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALK--------LANAFDWP-----------LKVFPGHQ   67 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--------~~~~~~~~-----------~~~~~~~~   67 (376)
                      .+|+|||+|.||......+++.   +.+|+ ++|++++..+.+.+        +. +.|.-           +....+++
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~---G~~V~-v~d~~~~~~~~~~~~~~~~l~~l~-~~g~~~~~~~~~~~~~i~~~~~~~   77 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARA---GHEVR-LWDADPAAAAAAPAYIAGRLEDLA-AFDLLDGEAPDAVLARIRVTDSLA   77 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHC---CCeeE-EEeCCHHHHHHHHHHHHHHHHHHH-HcCCCchhhHHHHhcCeEEECcHH
Confidence            4899999999999888888775   67766 68999875544332        11 12310           13567888


Q ss_pred             HHhhCCCCCEEEEeCCCCccHHH-HHHHHc-CCCCCeEEEecCCCCCHHHHHHHHHHHHhCCC
Q 017143           68 ELLDSGLCDVVVVSTPNMTHYQI-LMDIIN-HPKPHHVLVEKPLCTTVADCKKVVDAARKRPD  128 (376)
Q Consensus        68 ~~l~~~~~D~V~i~t~~~~h~~~-~~~al~-~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~  128 (376)
                      +++++  .|+|+.++|....... +...++ ...+..+++   .+++.....++.+.+ ...+
T Consensus        78 ~a~~~--ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~---ssts~~~~~~la~~~-~~~~  134 (308)
T PRK06129         78 DAVAD--ADYVQESAPENLELKRALFAELDALAPPHAILA---SSTSALLASAFTEHL-AGRE  134 (308)
T ss_pred             HhhCC--CCEEEECCcCCHHHHHHHHHHHHHhCCCcceEE---EeCCCCCHHHHHHhc-CCcc
Confidence            88876  8999999998743222 222222 112333332   334444566677777 4444

>PLN02858 fructose-bisphosphate aldolase

Probab=97.44  E-value=0.0023  Score=69.94  Aligned_cols=107  Identities=13%  Similarity=0.082  Sum_probs=80.2

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      --|||+||+|.||......|.+.   +++|. +||++++   +++++++. |.  ..+++..++.+.  .|+|++|.|+.
T Consensus         4 ~~~IGfIGLG~MG~~mA~~L~~~---G~~v~-v~dr~~~---~~~~l~~~-Ga--~~~~s~~e~a~~--advVi~~l~~~   71 (1378)
T PLN02858          4 AGVVGFVGLDSLSFELASSLLRS---GFKVQ-AFEISTP---LMEKFCEL-GG--HRCDSPAEAAKD--AAALVVVLSHP   71 (1378)
T ss_pred             CCeEEEEchhHHHHHHHHHHHHC---CCeEE-EEcCCHH---HHHHHHHc-CC--eecCCHHHHHhc--CCEEEEEcCCh
Confidence            35799999999999998888774   78875 7999988   56666543 54  477899999987  89999999998


Q ss_pred             ccHHHHH----HHHcCC-CCCeEEEecCCCCCHHHHHHHHHHHHhC
Q 017143           86 THYQILM----DIINHP-KPHHVLVEKPLCTTVADCKKVVDAARKR  126 (376)
Q Consensus        86 ~h~~~~~----~al~~~-~g~~Vl~EKP~a~~~~e~~~l~~~a~~~  126 (376)
                      .+.+-+.    .++... .| .++++-- +.+++..+++.+.+.++
T Consensus        72 ~~v~~V~~g~~g~~~~l~~g-~iivd~S-Ti~p~~~~~la~~l~~~  115 (1378)
T PLN02858         72 DQVDDVFFGDEGAAKGLQKG-AVILIRS-TILPLQLQKLEKKLTER  115 (1378)
T ss_pred             HHHHHHHhchhhHHhcCCCc-CEEEECC-CCCHHHHHHHHHHHHhc
Confidence            8766554    122210 34 5777764 67888999998887444

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=97.43  E-value=0.0012  Score=55.84  Aligned_cols=81  Identities=20%  Similarity=0.210  Sum_probs=60.1

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      |++++|+|+|.+|......+...   +.+++....+.++   +.+..++..+..+. -.+.+++.+.  .|+|+++.|..
T Consensus         1 m~~~~i~GtGniG~alA~~~a~a---g~eV~igs~r~~~---~~~a~a~~l~~~i~-~~~~~dA~~~--aDVVvLAVP~~   71 (211)
T COG2085           1 MMIIAIIGTGNIGSALALRLAKA---GHEVIIGSSRGPK---ALAAAAAALGPLIT-GGSNEDAAAL--ADVVVLAVPFE   71 (211)
T ss_pred             CcEEEEeccChHHHHHHHHHHhC---CCeEEEecCCChh---HHHHHHHhhccccc-cCChHHHHhc--CCEEEEeccHH
Confidence            47899999999999999888885   7888866566665   33444555554322 2456777776  79999999988


Q ss_pred             ccHHHHHHHH
Q 017143           86 THYQILMDII   95 (376)
Q Consensus        86 ~h~~~~~~al   95 (376)
                      .+...+.+.-
T Consensus        72 a~~~v~~~l~   81 (211)
T COG2085          72 AIPDVLAELR   81 (211)
T ss_pred             HHHhHHHHHH
Confidence            8888777665

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=97.43  E-value=0.0017  Score=52.77  Aligned_cols=36  Identities=33%  Similarity=0.474  Sum_probs=31.4

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCC-Chh
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADP-HLQ   44 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~-~~~   44 (376)
                      +||||+|+|.||+.++..+...  ++++++++.|+ +++
T Consensus         1 ikv~I~G~GriGr~v~~~~~~~--~~~~lvai~d~~~~~   37 (149)
T smart00846        1 IKVGINGFGRIGRLVLRALLER--PDIEVVAINDLTDPE   37 (149)
T ss_pred             CEEEEECcCHHHHHHHHHHHhC--CCCEEEEeecCCCHH
Confidence            5899999999999999988876  89999999995 443

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.40  E-value=0.00094  Score=60.31  Aligned_cols=102  Identities=23%  Similarity=0.222  Sum_probs=72.6

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCC-CcEEEEEeC-CChhhHHHHHHHHHhcC-C----------------CCCccCCH
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQ-GVSVVCIAD-PHLQSRQQALKLANAFD-W----------------PLKVFPGH   66 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~-~~~~~~v~d-~~~~~~~~~~~~~~~~~-~----------------~~~~~~~~   66 (376)
                      ++||||-|.|.||+..++++...  + +++++||-| .+++......+.-.-+| +                .++++.+.
T Consensus         1 ~ikV~INGfGrIGR~v~ra~~~~--~~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I~v~~~~   78 (335)
T COG0057           1 MIKVAINGFGRIGRLVARAALER--DGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGIKVLAER   78 (335)
T ss_pred             CcEEEEecCcHHHHHHHHHHHhC--CCCeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccccCCeEEECCceEEEEecC
Confidence            48999999999999999998887  6 799999999 66663322222111011 0                01234444


Q ss_pred             H-HHhhC--CCCCEEEEeCCCCccHHHHHHHHcCCCC--CeEEEecCCCC
Q 017143           67 Q-ELLDS--GLCDVVVVSTPNMTHYQILMDIINHPKP--HHVLVEKPLCT  111 (376)
Q Consensus        67 ~-~~l~~--~~~D~V~i~t~~~~h~~~~~~al~~~~g--~~Vl~EKP~a~  111 (376)
                      + +.|..  ..+|+|+=|||-....+-+.+-++  +|  |-|++--|...
T Consensus        79 ~p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~--agGaKkV~isap~~~  126 (335)
T COG0057          79 DPANLPWADLGVDIVVECTGKFTGREKAEKHLK--AGGAKKVLISAPGKD  126 (335)
T ss_pred             ChHHCCccccCccEEEECCCCccchhhHHHHHH--hcCCCEEEEcCCCCC
Confidence            4 55654  347899999999998888888888  54  89999888765

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.38  E-value=0.0048  Score=56.27  Aligned_cols=76  Identities=18%  Similarity=0.225  Sum_probs=53.2

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHH----H---hcC-CC----------CCccCCHHH
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLA----N---AFD-WP----------LKVFPGHQE   68 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~----~---~~~-~~----------~~~~~~~~~   68 (376)
                      -||+|||+|.||......+...   +.+|+ ++|++++..+++.+..    .   +.+ +.          +...+++++
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~---G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   77 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVS---GFQTT-LVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKA   77 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhC---CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHH
Confidence            3799999999999987777764   67766 6899998665543211    0   001 10          124678888


Q ss_pred             HhhCCCCCEEEEeCCCCccH
Q 017143           69 LLDSGLCDVVVVSTPNMTHY   88 (376)
Q Consensus        69 ~l~~~~~D~V~i~t~~~~h~   88 (376)
                      .+++  .|+|+.|.|.....
T Consensus        78 ~~~~--aD~Vi~avpe~~~~   95 (288)
T PRK09260         78 AVAD--ADLVIEAVPEKLEL   95 (288)
T ss_pred             hhcC--CCEEEEeccCCHHH
Confidence            8876  89999999998653

>PRK06545 prephenate dehydrogenase; Validated

Probab=97.38  E-value=0.0023  Score=60.31  Aligned_cols=117  Identities=18%  Similarity=0.162  Sum_probs=66.7

Q ss_pred             eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCcc
Q 017143            8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMTH   87 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~h   87 (376)
                      +|+|||+|.||......+.+.   +.++. +++++++......  +...++.....+++++++++  .|+|++|+|+..-
T Consensus         2 ~I~iIG~GliG~siA~~L~~~---G~~v~-i~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~--aDlVilavP~~~~   73 (359)
T PRK06545          2 TVLIVGLGLIGGSLALAIKAA---GPDVF-IIGYDPSAAQLAR--ALGFGVIDELAADLQRAAAE--ADLIVLAVPVDAT   73 (359)
T ss_pred             eEEEEEeCHHHHHHHHHHHhc---CCCeE-EEEeCCCHHHHHH--HhcCCCCcccccCHHHHhcC--CCEEEEeCCHHHH
Confidence            699999999999999888775   44443 4566655322221  23344432334677887765  8999999999765


Q ss_pred             HHHHHHHHcC-CCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEee
Q 017143           88 YQILMDIINH-PKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGL  135 (376)
Q Consensus        88 ~~~~~~al~~-~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~  135 (376)
                      .+++.+.... -....|++. =.+....-.+.+.+.. .. +..+.-++
T Consensus        74 ~~vl~~l~~~~l~~~~ivtD-v~SvK~~i~~~~~~~~-~~-~~~~ig~H  119 (359)
T PRK06545         74 AALLAELADLELKPGVIVTD-VGSVKGAILAEAEALL-GD-LIRFVGGH  119 (359)
T ss_pred             HHHHHHHhhcCCCCCcEEEe-CccccHHHHHHHHHhc-CC-CCeEEeeC
Confidence            5555444320 011234444 2233444444454442 22 34444444

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=97.37  E-value=0.0037  Score=61.51  Aligned_cols=74  Identities=22%  Similarity=0.284  Sum_probs=53.7

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHH----Hh-----------cCCCCCccCCHHHHhh
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLA----NA-----------FDWPLKVFPGHQELLD   71 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~----~~-----------~~~~~~~~~~~~~~l~   71 (376)
                      .||||||+|.||...+..+...   +++|+ ++|++++..+...+..    +.           .+ .+...++++++++
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~---G~~V~-v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g-~i~~~~~~~ea~~   79 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLA---GIDVA-VFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEG-RLTFCASLAEAVA   79 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhC---CCeEE-EEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhh-ceEeeCCHHHHhc
Confidence            4899999999999988888774   78865 7899988654332210    00           11 0235678888887


Q ss_pred             CCCCCEEEEeCCCCcc
Q 017143           72 SGLCDVVVVSTPNMTH   87 (376)
Q Consensus        72 ~~~~D~V~i~t~~~~h   87 (376)
                      +  .|+|+.+.|+...
T Consensus        80 ~--aD~Vieavpe~~~   93 (495)
T PRK07531         80 G--ADWIQESVPERLD   93 (495)
T ss_pred             C--CCEEEEcCcCCHH
Confidence            6  8999999999864

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=97.36  E-value=0.00048  Score=53.48  Aligned_cols=101  Identities=22%  Similarity=0.306  Sum_probs=64.6

Q ss_pred             eEEEEeC----ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143            8 KYGIIGM----GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         8 ~v~iiG~----G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      +|+|||+    +.+|...+..+.+.   +++++.|--...+          -.|+  +.|.+++| . -..+|+++|++|
T Consensus         2 siAVvGaS~~~~~~g~~v~~~l~~~---G~~v~~Vnp~~~~----------i~G~--~~y~sl~e-~-p~~iDlavv~~~   64 (116)
T PF13380_consen    2 SIAVVGASDNPGKFGYRVLRNLKAA---GYEVYPVNPKGGE----------ILGI--KCYPSLAE-I-PEPIDLAVVCVP   64 (116)
T ss_dssp             EEEEET--SSTTSHHHHHHHHHHHT---T-EEEEESTTCSE----------ETTE--E-BSSGGG-C-SST-SEEEE-S-
T ss_pred             EEEEEcccCCCCChHHHHHHHHHhC---CCEEEEECCCceE----------ECcE--EeeccccC-C-CCCCCEEEEEcC
Confidence            6999995    56788888888774   7898887433222          2365  49999998 3 235999999999


Q ss_pred             CCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEE
Q 017143           84 NMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQ  132 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~  132 (376)
                      +..-.+++.+|.+.| -+.|++---     .+-.++.+.+++ .|+.+.
T Consensus        65 ~~~~~~~v~~~~~~g-~~~v~~~~g-----~~~~~~~~~a~~-~gi~vi  106 (116)
T PF13380_consen   65 PDKVPEIVDEAAALG-VKAVWLQPG-----AESEELIEAARE-AGIRVI  106 (116)
T ss_dssp             HHHHHHHHHHHHHHT--SEEEE-TT-----S--HHHHHHHHH-TT-EEE
T ss_pred             HHHHHHHHHHHHHcC-CCEEEEEcc-----hHHHHHHHHHHH-cCCEEE
Confidence            999999999998843 244555433     556678888844 477654

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.35  E-value=0.00043  Score=64.11  Aligned_cols=88  Identities=7%  Similarity=0.030  Sum_probs=59.7

Q ss_pred             CceeEEEEeC-ChhhHHHHHHhh--hhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHH-HhhCCCCCEEEE
Q 017143            5 DTVKYGIIGM-GMMGREHFINLH--HLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQE-LLDSGLCDVVVV   80 (376)
Q Consensus         5 ~~~~v~iiG~-G~~g~~~~~~~~--~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~D~V~i   80 (376)
                      +|+||+|+|+ |..|...+..|.  .+  |.++++.+.+.+..    .+.+. ..+.+ ..+.+.++ -++  ++|+|+.
T Consensus         3 ~~~~IaIvGATG~vG~eLlrlL~~~~h--P~~~l~~v~s~~~a----G~~l~-~~~~~-l~~~~~~~~~~~--~vD~vFl   72 (336)
T PRK05671          3 QPLDIAVVGATGTVGEALVQILEERDF--PVGTLHLLASSESA----GHSVP-FAGKN-LRVREVDSFDFS--QVQLAFF   72 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhhCCC--CceEEEEEECcccC----CCeec-cCCcc-eEEeeCChHHhc--CCCEEEE
Confidence            4589999995 999999999998  45  89999998876432    11111 11111 12222221 133  4999999


Q ss_pred             eCCCCccHHHHHHHHcCCCCCeEE
Q 017143           81 STPNMTHYQILMDIINHPKPHHVL  104 (376)
Q Consensus        81 ~t~~~~h~~~~~~al~~~~g~~Vl  104 (376)
                      ++|+....+++.++++  +|+-|+
T Consensus        73 a~p~~~s~~~v~~~~~--~G~~VI   94 (336)
T PRK05671         73 AAGAAVSRSFAEKARA--AGCSVI   94 (336)
T ss_pred             cCCHHHHHHHHHHHHH--CCCeEE
Confidence            9999888899999999  776443

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=97.34  E-value=0.00036  Score=64.51  Aligned_cols=140  Identities=9%  Similarity=0.060  Sum_probs=87.2

Q ss_pred             CCceeEEEEeC-ChhhHHHHHHhhh--hcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEE
Q 017143            4 NDTVKYGIIGM-GMMGREHFINLHH--LRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         4 ~~~~~v~iiG~-G~~g~~~~~~~~~--~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      ++++||||||+ |..|...++.|.+  +  |.++|+.+.+.+..    .+.+. -.+.+ ..+++.++..- .++|+|+.
T Consensus         2 ~~~~~vaIvGATG~vG~ellrlL~~~~h--P~~~l~~laS~~sa----G~~~~-~~~~~-~~v~~~~~~~~-~~~Dvvf~   72 (336)
T PRK08040          2 SEGWNIALLGATGAVGEALLELLAERQF--PVGELYALASEESA----GETLR-FGGKS-VTVQDAAEFDW-SQAQLAFF   72 (336)
T ss_pred             CCCCEEEEEccCCHHHHHHHHHHhcCCC--CceEEEEEEccCcC----CceEE-ECCcc-eEEEeCchhhc-cCCCEEEE
Confidence            35799999995 9999999999988  6  89999998765332    11111 00212 23335555421 24899999


Q ss_pred             eCCCCccHHHHHHHHcCCCCCeEEE---------ecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHH
Q 017143           81 STPNMTHYQILMDIINHPKPHHVLV---------EKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVK  151 (376)
Q Consensus        81 ~t~~~~h~~~~~~al~~~~g~~Vl~---------EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~  151 (376)
                      |+|+....+++.++++  +|..|+=         +.|+....--. +.++.. ++.+  +.-+.++.-......++-+++
T Consensus        73 a~p~~~s~~~~~~~~~--~g~~VIDlS~~fRl~~~vP~~lPEvn~-~~l~~i-~~~~--iIAnPgC~~t~~~laL~PL~~  146 (336)
T PRK08040         73 VAGREASAAYAEEATN--AGCLVIDSSGLFALEPDVPLVVPEVNP-FVLADY-RNRN--IIAVADSLTSQLLTAIKPLID  146 (336)
T ss_pred             CCCHHHHHHHHHHHHH--CCCEEEECChHhcCCCCCceEccccCH-HHHhhh-ccCC--EEECCCHHHHHHHHHHHHHHH
Confidence            9999999999999999  7765432         12332211111 111222 1223  445555555667777888888


Q ss_pred             cCCCCce
Q 017143          152 SGSIGQV  158 (376)
Q Consensus       152 ~g~iG~i  158 (376)
                      .+.|-+|
T Consensus       147 ~~~i~~v  153 (336)
T PRK08040        147 QAGLSRL  153 (336)
T ss_pred             hCCCeEE
Confidence            8777653

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.32  E-value=0.0015  Score=61.56  Aligned_cols=91  Identities=25%  Similarity=0.311  Sum_probs=70.0

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC-
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN-   84 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~-   84 (376)
                      .-++.|||+|-||..-+..|...   ++.-+.|+.|+.+   ++++++.++|..+..++++.+.|.+  .|+|+.+|.. 
T Consensus       178 ~~~vlvIGAGem~~lva~~L~~~---g~~~i~IaNRT~e---rA~~La~~~~~~~~~l~el~~~l~~--~DvVissTsa~  249 (414)
T COG0373         178 DKKVLVIGAGEMGELVAKHLAEK---GVKKITIANRTLE---RAEELAKKLGAEAVALEELLEALAE--ADVVISSTSAP  249 (414)
T ss_pred             cCeEEEEcccHHHHHHHHHHHhC---CCCEEEEEcCCHH---HHHHHHHHhCCeeecHHHHHHhhhh--CCEEEEecCCC
Confidence            46799999999999888778775   7777889999888   8999999999554455666666665  8999999763 


Q ss_pred             --CccHHHHHHHHcCCCCCe-EEEe
Q 017143           85 --MTHYQILMDIINHPKPHH-VLVE  106 (376)
Q Consensus        85 --~~h~~~~~~al~~~~g~~-Vl~E  106 (376)
                        -.....+..+++  ..++ ++++
T Consensus       250 ~~ii~~~~ve~a~~--~r~~~livD  272 (414)
T COG0373         250 HPIITREMVERALK--IRKRLLIVD  272 (414)
T ss_pred             ccccCHHHHHHHHh--cccCeEEEE
Confidence              255677778877  5566 5553

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.30  E-value=0.00087  Score=62.81  Aligned_cols=91  Identities=21%  Similarity=0.298  Sum_probs=60.7

Q ss_pred             CceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCC------C----CCcc--CCHHHHhh
Q 017143            5 DTVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDW------P----LKVF--PGHQELLD   71 (376)
Q Consensus         5 ~~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~------~----~~~~--~~~~~~l~   71 (376)
                      +++||+|+| +|.+|...+..+..+  +.++|+++. .+++..  .+.+..-+++      +    ...+  .+.+++ .
T Consensus         2 ~~~~V~I~GatG~iG~~l~~~L~~~--p~~el~~~~-~s~~~~--G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~   75 (349)
T PRK08664          2 MKLKVGILGATGMVGQRFVQLLANH--PWFEVTALA-ASERSA--GKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAV-D   75 (349)
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHcC--CCceEEEEE-cChhhc--CCcccccccccccccccccccceEEEeCCHHHh-c
Confidence            369999998 799999999999888  899999982 222211  1111111111      0    0011  133333 3


Q ss_pred             CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEE
Q 017143           72 SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLV  105 (376)
Q Consensus        72 ~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~  105 (376)
                        ++|+|+.++|+..+.+++.++.+  +|+.|+.
T Consensus        76 --~~DvVf~a~p~~~s~~~~~~~~~--~G~~vID  105 (349)
T PRK08664         76 --DVDIVFSALPSDVAGEVEEEFAK--AGKPVFS  105 (349)
T ss_pred             --CCCEEEEeCChhHHHHHHHHHHH--CCCEEEE
Confidence              48999999999999999988888  7777654

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.28  E-value=0.0058  Score=55.54  Aligned_cols=81  Identities=21%  Similarity=0.268  Sum_probs=53.3

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHH--------HHHHhcCCC----------CCccCCHH
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQAL--------KLANAFDWP----------LKVFPGHQ   67 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~--------~~~~~~~~~----------~~~~~~~~   67 (376)
                      ..||+|||+|.+|......++..   +.+|+ ++|++++..+++.        ++.++..+.          +...++++
T Consensus         3 ~~kI~VIG~G~mG~~ia~~la~~---g~~V~-~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~   78 (282)
T PRK05808          3 IQKIGVIGAGTMGNGIAQVCAVA---GYDVV-MVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD   78 (282)
T ss_pred             ccEEEEEccCHHHHHHHHHHHHC---CCceE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH
Confidence            35899999999999888888765   67766 5799988664332        222221111          12456776


Q ss_pred             HHhhCCCCCEEEEeCCCCcc--HHHHHH
Q 017143           68 ELLDSGLCDVVVVSTPNMTH--YQILMD   93 (376)
Q Consensus        68 ~~l~~~~~D~V~i~t~~~~h--~~~~~~   93 (376)
                      + +++  .|+|++|.|++..  .++..+
T Consensus        79 ~-~~~--aDlVi~av~e~~~~k~~~~~~  103 (282)
T PRK05808         79 D-LKD--ADLVIEAATENMDLKKKIFAQ  103 (282)
T ss_pred             H-hcc--CCeeeecccccHHHHHHHHHH
Confidence            5 444  8999999998655  344444

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=97.27  E-value=0.0032  Score=59.76  Aligned_cols=72  Identities=18%  Similarity=0.164  Sum_probs=46.1

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHH------------HHHhcCCCCCccCCHHHHhhCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALK------------LANAFDWPLKVFPGHQELLDSGL   74 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~   74 (376)
                      |||+|||+|.+|......++ .   +.+|+ ++|+++++.+...+            +..+.+.......+..++..+  
T Consensus         1 mkI~VIGlGyvGl~~A~~lA-~---G~~Vi-gvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~--   73 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLIA-Q---NHEVV-ALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRD--   73 (388)
T ss_pred             CEEEEECCCHHHHHHHHHHH-h---CCcEE-EEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcC--
Confidence            37999999999998775544 3   57766 68999986544432            000112111222345566654  


Q ss_pred             CCEEEEeCCCC
Q 017143           75 CDVVVVSTPNM   85 (376)
Q Consensus        75 ~D~V~i~t~~~   85 (376)
                      .|+|++|+|+.
T Consensus        74 ad~vii~Vpt~   84 (388)
T PRK15057         74 ADYVIIATPTD   84 (388)
T ss_pred             CCEEEEeCCCC
Confidence            89999999976

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=97.26  E-value=0.0074  Score=58.66  Aligned_cols=75  Identities=19%  Similarity=0.178  Sum_probs=48.0

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHH------------HHHHh-cCCCCCccCCHHHHhhC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQAL------------KLANA-FDWPLKVFPGHQELLDS   72 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~------------~~~~~-~~~~~~~~~~~~~~l~~   72 (376)
                      ++||+|||+|.+|....-.|+... .+++++++ |.++++.+...            ++..+ .+-.....+++++.+.+
T Consensus         1 ~m~I~ViG~GyvGl~~A~~lA~~g-~g~~V~gv-D~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~   78 (473)
T PLN02353          1 MVKICCIGAGYVGGPTMAVIALKC-PDIEVVVV-DISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAE   78 (473)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcC-CCCeEEEE-ECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhc
Confidence            368999999999998888787751 36888864 89888544321            11111 01011244566666655


Q ss_pred             CCCCEEEEeCCC
Q 017143           73 GLCDVVVVSTPN   84 (376)
Q Consensus        73 ~~~D~V~i~t~~   84 (376)
                        .|+++||.|+
T Consensus        79 --advi~I~V~T   88 (473)
T PLN02353         79 --ADIVFVSVNT   88 (473)
T ss_pred             --CCEEEEEeCC
Confidence              7988888764

>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=97.25  E-value=0.0011  Score=53.90  Aligned_cols=100  Identities=21%  Similarity=0.217  Sum_probs=67.4

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-------CC--------------c--c
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-------LK--------------V--F   63 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-------~~--------------~--~   63 (376)
                      +||||-|.|+||+..++++...  ++++|++|.|+.++.. ...- .-+|...       +.              +  .
T Consensus         1 ikVgINGfGRIGR~v~r~~~~~--~~~evvaInd~~~~~~-~~a~-LlkyDs~~G~~~~~v~~~~~~l~v~G~~I~~~~~   76 (151)
T PF00044_consen    1 IKVGINGFGRIGRLVLRAALDQ--PDIEVVAINDPAPDPE-YLAY-LLKYDSVHGRFPGDVEVDDDGLIVNGKKIKVTEE   76 (151)
T ss_dssp             EEEEEESTSHHHHHHHHHHHTS--TTEEEEEEEESSSSHH-HHHH-HHHEETTTESGSSHEEEETTEEEETTEEEEEEHT
T ss_pred             CEEEEECCCcccHHHHHhhccc--ceEEEEEEecccccch-hhhh-hhhccccccceecccccccceeEeecccccchhh
Confidence            6999999999999999998876  8999999999984421 1222 2223210       00              0  0


Q ss_pred             CCHHHHhh-CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCC
Q 017143           64 PGHQELLD-SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCT  111 (376)
Q Consensus        64 ~~~~~~l~-~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~  111 (376)
                      .+.+++-. ...+|+|+=||+.....+-+..-+++| -|-|++--|...
T Consensus        77 ~dp~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~G-akkViisap~~~  124 (151)
T PF00044_consen   77 RDPEEIPWGELGVDIVVECTGKFRTRENAEAHLDAG-AKKVIISAPSKD  124 (151)
T ss_dssp             SSGGGSTHHHHTESEEEETSSSTHSHHHHTHHHHTT-ESEEEESSS-SS
T ss_pred             hhhcccccccccccEEEeccccceeccccccccccc-ccceeecccccc
Confidence            11111111 124899999999999888888888865 477998888754

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....

>PLN03139 formate dehydrogenase; Provisional

Probab=97.25  E-value=0.0011  Score=62.35  Aligned_cols=70  Identities=23%  Similarity=0.340  Sum_probs=52.7

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      -.+|||||+|.||+..+..++..   +.+|.+ +|++..+.    +...+.|+.  .++++++++.+  .|+|++++|..
T Consensus       199 gktVGIVG~G~IG~~vA~~L~af---G~~V~~-~d~~~~~~----~~~~~~g~~--~~~~l~ell~~--sDvV~l~lPlt  266 (386)
T PLN03139        199 GKTVGTVGAGRIGRLLLQRLKPF---NCNLLY-HDRLKMDP----ELEKETGAK--FEEDLDAMLPK--CDVVVINTPLT  266 (386)
T ss_pred             CCEEEEEeecHHHHHHHHHHHHC---CCEEEE-ECCCCcch----hhHhhcCce--ecCCHHHHHhh--CCEEEEeCCCC
Confidence            35899999999999999888876   888764 78875321    222345643  56799999977  89999999965


Q ss_pred             cc
Q 017143           86 TH   87 (376)
Q Consensus        86 ~h   87 (376)
                      ..
T Consensus       267 ~~  268 (386)
T PLN03139        267 EK  268 (386)
T ss_pred             HH
Confidence            43

>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]

Probab=97.22  E-value=0.0018  Score=56.89  Aligned_cols=117  Identities=18%  Similarity=0.193  Sum_probs=89.6

Q ss_pred             CceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143            5 DTVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         5 ~~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      +.-|+.+-| +|..|..|...+...   +.++++-+.+..-    .+.   -.++|  +|++.+|+++....|+.+|..|
T Consensus         7 k~tkvivqGitg~~gtfh~~~~l~y---Gt~~V~GvtPgkg----G~~---~~g~P--Vf~tV~EA~~~~~a~~svI~Vp   74 (293)
T COG0074           7 KDTKVIVQGITGKQGTFHTEQMLAY---GTKIVGGVTPGKG----GQT---ILGLP--VFNTVEEAVKETGANASVIFVP   74 (293)
T ss_pred             CCCeEEEeccccccchHHHHHHHHh---CCceeecccCCCC----ceE---EcCcc--HHHHHHHHHHhhCCCEEEEecC
Confidence            457899999 588999999988887   7778877766543    121   23666  9999999999988999999999


Q ss_pred             CCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeecc
Q 017143           84 NMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEY  137 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~  137 (376)
                      +..-.+.+++|++  +|...++==-=...+.|..++.+.++++ + ..++|.++
T Consensus        75 ~~~aadai~EAid--a~i~liv~ITEgIP~~D~~~~~~~a~~~-g-~~iiGPnc  124 (293)
T COG0074          75 PPFAADAILEAID--AGIKLVVIITEGIPVLDMLELKRYAREK-G-TRLIGPNC  124 (293)
T ss_pred             cHHHHHHHHHHHh--CCCcEEEEEeCCCCHHHHHHHHHHHHhc-C-CEEECCCC
Confidence            9999999999999  6555443333356788999999999666 5 44455443

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=97.21  E-value=0.0017  Score=58.93  Aligned_cols=125  Identities=14%  Similarity=0.076  Sum_probs=80.7

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      .||+|+|. |..|...++.|..+  |+++++.+.+...              +.  . .+.++++++  +|+|+.|+|+.
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~H--P~~el~~l~s~~~--------------~~--~-~~~~~~~~~--~D~vFlalp~~   60 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGR--DDIELLSIAPDRR--------------KD--A-AERAKLLNA--ADVAILCLPDD   60 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCC--CCeEEEEEecccc--------------cC--c-CCHhHhhcC--CCEEEECCCHH
Confidence            58999995 88999999999999  9999999986532              11  1 134566654  99999999999


Q ss_pred             ccHHHHHHHHcCCCCCeEEE---------ecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCC
Q 017143           86 THYQILMDIINHPKPHHVLV---------EKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIG  156 (376)
Q Consensus        86 ~h~~~~~~al~~~~g~~Vl~---------EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG  156 (376)
                      ...+++.++.+  +|+.|+=         +-|.....--.. -.+.. +..+  +..+..+.-......++-+++.|.+-
T Consensus        61 ~s~~~~~~~~~--~g~~VIDlSadfRl~~~~~yglPEln~~-~~~~i-~~a~--lIAnPgC~aTa~~LaL~PL~~~~li~  134 (310)
T TIGR01851        61 AAREAVSLVDN--PNTCIIDASTAYRTADDWAYGFPELAPG-QREKI-RNSK--RIANPGCYPTGFIALMRPLVEAGILP  134 (310)
T ss_pred             HHHHHHHHHHh--CCCEEEECChHHhCCCCCeEEccccCHH-HHHhh-ccCC--EEECCCCHHHHHHHHHHHHHHcCCcc
Confidence            99999998888  7765542         122222111001 11111 1122  33333333345666788888888876


Q ss_pred             ce
Q 017143          157 QV  158 (376)
Q Consensus       157 ~i  158 (376)
                      ++
T Consensus       135 ~~  136 (310)
T TIGR01851       135 AD  136 (310)
T ss_pred             cc
Confidence            54

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.20  E-value=0.0072  Score=55.04  Aligned_cols=108  Identities=19%  Similarity=0.241  Sum_probs=75.2

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh-----c--CCC----CCccCCHHHHhhCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA-----F--DWP----LKVFPGHQELLDSGL   74 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~-----~--~~~----~~~~~~~~~~l~~~~   74 (376)
                      ++||+|||.|.||......+.++   +.+ |-+|.++++-   ..++-..     |  |+.    +..++|+++++++  
T Consensus         1 ~~kI~ViGaGswGTALA~~la~n---g~~-V~lw~r~~~~---~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~--   71 (329)
T COG0240           1 MMKIAVIGAGSWGTALAKVLARN---GHE-VRLWGRDEEI---VAEINETRENPKYLPGILLPPNLKATTDLAEALDG--   71 (329)
T ss_pred             CceEEEEcCChHHHHHHHHHHhc---CCe-eEEEecCHHH---HHHHHhcCcCccccCCccCCcccccccCHHHHHhc--
Confidence            46899999999999888878775   444 5588998884   3344332     1  222    3568899999987  


Q ss_pred             CCEEEEeCCCCccHHHHHHH---HcCCCCCeEEEecCCCCC-HHHHHHHHHHH
Q 017143           75 CDVVVVSTPNMTHYQILMDI---INHPKPHHVLVEKPLCTT-VADCKKVVDAA  123 (376)
Q Consensus        75 ~D~V~i~t~~~~h~~~~~~a---l~~~~g~~Vl~EKP~a~~-~~e~~~l~~~a  123 (376)
                      .|+|++++|.+...+.+.+.   ++. .-+-|.|-|=+..+ ..-..++++..
T Consensus        72 ad~iv~avPs~~~r~v~~~l~~~l~~-~~~iv~~sKGie~~t~~l~seii~e~  123 (329)
T COG0240          72 ADIIVIAVPSQALREVLRQLKPLLLK-DAIIVSATKGLEPETGRLLSEIIEEE  123 (329)
T ss_pred             CCEEEEECChHHHHHHHHHHhhhccC-CCeEEEEeccccCCCcchHHHHHHHH
Confidence            89999999999998888874   332 34568888877653 33333344333

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=97.17  E-value=0.0011  Score=55.90  Aligned_cols=67  Identities=28%  Similarity=0.414  Sum_probs=48.8

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      -.+|||||+|.+|+..+..++..   +.+|++ +|++.....    .....++   .+.+++++++.  .|+|+++.|-.
T Consensus        36 g~tvgIiG~G~IG~~vA~~l~~f---G~~V~~-~d~~~~~~~----~~~~~~~---~~~~l~ell~~--aDiv~~~~plt  102 (178)
T PF02826_consen   36 GKTVGIIGYGRIGRAVARRLKAF---GMRVIG-YDRSPKPEE----GADEFGV---EYVSLDELLAQ--ADIVSLHLPLT  102 (178)
T ss_dssp             TSEEEEESTSHHHHHHHHHHHHT---T-EEEE-EESSCHHHH----HHHHTTE---EESSHHHHHHH---SEEEE-SSSS
T ss_pred             CCEEEEEEEcCCcCeEeeeeecC---CceeEE-ecccCChhh----hcccccc---eeeehhhhcch--hhhhhhhhccc
Confidence            46899999999999999888887   888775 677776321    1223343   46799999998  89999999943

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.16  E-value=0.0057  Score=52.44  Aligned_cols=108  Identities=15%  Similarity=0.186  Sum_probs=69.6

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ..+|+|+|+|.+|......|.+.   +.+|+ ++|++++   +.+++.+.++..  ..+ .++++.. ++|+++-|+...
T Consensus        28 gk~v~I~G~G~vG~~~A~~L~~~---G~~Vv-v~D~~~~---~~~~~~~~~g~~--~v~-~~~l~~~-~~Dv~vp~A~~~   96 (200)
T cd01075          28 GKTVAVQGLGKVGYKLAEHLLEE---GAKLI-VADINEE---AVARAAELFGAT--VVA-PEEIYSV-DADVFAPCALGG   96 (200)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC---CCEEE-EEcCCHH---HHHHHHHHcCCE--EEc-chhhccc-cCCEEEeccccc
Confidence            46899999999999888888775   78988 8899887   455666666643  333 3666664 599998666543


Q ss_pred             -ccHHHHHHHHcCCCCCeEEEecCCCCCH-HHHHHHHHHHHhCCCeEEEE
Q 017143           86 -THYQILMDIINHPKPHHVLVEKPLCTTV-ADCKKVVDAARKRPDILVQV  133 (376)
Q Consensus        86 -~h~~~~~~al~~~~g~~Vl~EKP~a~~~-~e~~~l~~~a~~~~~~~~~v  133 (376)
                       .+.+.+ +.|+    ..+++|+--.... .++.++++   ++ |+.+..
T Consensus        97 ~I~~~~~-~~l~----~~~v~~~AN~~~~~~~~~~~L~---~~-Gi~~~P  137 (200)
T cd01075          97 VINDDTI-PQLK----AKAIAGAANNQLADPRHGQMLH---ER-GILYAP  137 (200)
T ss_pred             ccCHHHH-HHcC----CCEEEECCcCccCCHhHHHHHH---HC-CCEEeC
Confidence             333333 4444    3478887544333 45544443   33 555543

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=97.16  E-value=0.0015  Score=58.52  Aligned_cols=98  Identities=14%  Similarity=0.271  Sum_probs=60.0

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcC-CCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRS-QGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~-~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      .+||+|||+|.||...+..+.+... ..-+++ ++++++++          .++  ....+.++++.+  .|+|++|+|+
T Consensus         3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~-~~~~~~~~----------~~~--~~~~~~~~~~~~--~D~Vilavkp   67 (260)
T PTZ00431          3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIY-YHTPSKKN----------TPF--VYLQSNEELAKT--CDIIVLAVKP   67 (260)
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCCCcceEE-EECCChhc----------CCe--EEeCChHHHHHh--CCEEEEEeCH
Confidence            4689999999999998888876510 112344 56776542          122  245677777765  7999999998


Q ss_pred             CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHH
Q 017143           85 MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKV  119 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l  119 (376)
                      +.-.+++.+....-.++.|++--. ..+.+..+++
T Consensus        68 ~~~~~vl~~i~~~l~~~~iIS~~a-Gi~~~~l~~~  101 (260)
T PTZ00431         68 DLAGKVLLEIKPYLGSKLLISICG-GLNLKTLEEM  101 (260)
T ss_pred             HHHHHHHHHHHhhccCCEEEEEeC-CccHHHHHHH
Confidence            876666655432101244444333 3345555544

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=97.13  E-value=0.0017  Score=58.40  Aligned_cols=67  Identities=24%  Similarity=0.255  Sum_probs=53.7

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      .+++|||||.|.+|+.....+-..   +..|. +|||++-     ...+++||..  .|+.+.++.++. +|.|+.||.
T Consensus        51 ~tl~IaIIGfGnmGqflAetli~a---Gh~li-~hsRsdy-----ssaa~~yg~~--~ft~lhdlcerh-pDvvLlcts  117 (480)
T KOG2380|consen   51 ATLVIAIIGFGNMGQFLAETLIDA---GHGLI-CHSRSDY-----SSAAEKYGSA--KFTLLHDLCERH-PDVVLLCTS  117 (480)
T ss_pred             cceEEEEEecCcHHHHHHHHHHhc---CceeE-ecCcchh-----HHHHHHhccc--ccccHHHHHhcC-CCEEEEEeh
Confidence            368999999999999988877775   77766 5787652     3456688864  899999988875 999999986

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.13  E-value=0.0091  Score=51.34  Aligned_cols=110  Identities=20%  Similarity=0.196  Sum_probs=73.6

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhC-CCCCEEEEeCCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDS-GLCDVVVVSTPNM   85 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~D~V~i~t~~~   85 (376)
                      ++|++||+|.||...+..+.+.   +.++|+ +|++++..+   ++ ..++.  ...+|++++++. +.|.+|.+-.|  
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~---ghdvV~-yD~n~~av~---~~-~~~ga--~~a~sl~el~~~L~~pr~vWlMvP--   68 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDG---GHDVVG-YDVNQTAVE---EL-KDEGA--TGAASLDELVAKLSAPRIVWLMVP--   68 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhC---CCeEEE-EcCCHHHHH---HH-HhcCC--ccccCHHHHHHhcCCCcEEEEEcc--
Confidence            5799999999999999888885   889885 899997433   32 24453  467888888876 33455555554  


Q ss_pred             ccHHHHHHHHcCCCCCeEEEecCCC-CCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcC
Q 017143           86 THYQILMDIINHPKPHHVLVEKPLC-TTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSG  153 (376)
Q Consensus        86 ~h~~~~~~al~~~~g~~Vl~EKP~a-~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g  153 (376)
                                             .+ .+-+-.++|.... +. |=.+.-|=|..|....++.+++-+.|
T Consensus        69 -----------------------ag~it~~vi~~la~~L-~~-GDivIDGGNS~y~Ds~rr~~~l~~kg  112 (300)
T COG1023          69 -----------------------AGDITDAVIDDLAPLL-SA-GDIVIDGGNSNYKDSLRRAKLLAEKG  112 (300)
T ss_pred             -----------------------CCCchHHHHHHHHhhc-CC-CCEEEECCccchHHHHHHHHHHHhcC
Confidence                                   44 3334444454444 44 44566666777777777777776653

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=97.10  E-value=0.0047  Score=59.84  Aligned_cols=109  Identities=17%  Similarity=0.245  Sum_probs=75.3

Q ss_pred             CceeEEEEeC----ChhhHHHHHHhhhhcCCCc--EEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEE
Q 017143            5 DTVKYGIIGM----GMMGREHFINLHHLRSQGV--SVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVV   78 (376)
Q Consensus         5 ~~~~v~iiG~----G~~g~~~~~~~~~~~~~~~--~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V   78 (376)
                      .+-+|+|||+    |.+|...+..+.+.   ++  +|+.| .+...         +-.|++  +|.+++++-+.  +|++
T Consensus         6 ~p~siavvGaS~~~~~~g~~~~~~l~~~---gf~g~v~~V-np~~~---------~i~G~~--~~~sl~~lp~~--~Dla   68 (447)
T TIGR02717         6 NPKSVAVIGASRDPGKVGYAIMKNLIEG---GYKGKIYPV-NPKAG---------EILGVK--AYPSVLEIPDP--VDLA   68 (447)
T ss_pred             CCCEEEEEccCCCCCchHHHHHHHHHhC---CCCCcEEEE-CCCCC---------ccCCcc--ccCCHHHCCCC--CCEE
Confidence            4678999998    66888888888875   44  55543 44322         134765  99999998543  8999


Q ss_pred             EEeCCCCccHHHHHHHHcCCCCCeEEE-ecCCCC----CHHHHHHHHHHHHhCCCeEEE
Q 017143           79 VVSTPNMTHYQILMDIINHPKPHHVLV-EKPLCT----TVADCKKVVDAARKRPDILVQ  132 (376)
Q Consensus        79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~-EKP~a~----~~~e~~~l~~~a~~~~~~~~~  132 (376)
                      +|++|+..-.+.+.+|.+.| -+.+++ -.-++.    ..+.-++|.+.++ ++|+.+.
T Consensus        69 vi~vp~~~~~~~l~e~~~~g-v~~~vi~s~gf~e~g~~g~~~~~~l~~~a~-~~girvl  125 (447)
T TIGR02717        69 VIVVPAKYVPQVVEECGEKG-VKGAVVITAGFKEVGEEGAELEQELVEIAR-KYGMRLL  125 (447)
T ss_pred             EEecCHHHHHHHHHHHHhcC-CCEEEEECCCccccCcchHHHHHHHHHHHH-HcCCEEE
Confidence            99999999999999999943 234544 111211    2333478999995 4576643

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.09  E-value=0.0046  Score=56.53  Aligned_cols=75  Identities=20%  Similarity=0.265  Sum_probs=50.9

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHH-HHh------cC-CC----------CCccCCHH
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKL-ANA------FD-WP----------LKVFPGHQ   67 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~-~~~------~~-~~----------~~~~~~~~   67 (376)
                      ..||+|||+|.||......+...   +.+|+ ++|++++.++++.+. .+.      .| ++          +...++++
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~~---G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   79 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCALA---GYDVL-LNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE   79 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC---CCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH
Confidence            46899999999999888777764   77866 789998866543221 111      12 11          13456775


Q ss_pred             HHhhCCCCCEEEEeCCCCcc
Q 017143           68 ELLDSGLCDVVVVSTPNMTH   87 (376)
Q Consensus        68 ~~l~~~~~D~V~i~t~~~~h   87 (376)
                      + ++  +.|+|+.|+|...+
T Consensus        80 ~-~~--~aD~Vieavpe~~~   96 (292)
T PRK07530         80 D-LA--DCDLVIEAATEDET   96 (292)
T ss_pred             H-hc--CCCEEEEcCcCCHH
Confidence            4 44  48999999998755

>PRK07574 formate dehydrogenase; Provisional

Probab=97.08  E-value=0.0021  Score=60.57  Aligned_cols=69  Identities=22%  Similarity=0.390  Sum_probs=52.6

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      .+|||||+|.||+..+..++..   +.+|. ++|+...+    .+..+++++  ..+.+++++++.  .|+|++++|...
T Consensus       193 ktVGIvG~G~IG~~vA~~l~~f---G~~V~-~~dr~~~~----~~~~~~~g~--~~~~~l~ell~~--aDvV~l~lPlt~  260 (385)
T PRK07574        193 MTVGIVGAGRIGLAVLRRLKPF---DVKLH-YTDRHRLP----EEVEQELGL--TYHVSFDSLVSV--CDVVTIHCPLHP  260 (385)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC---CCEEE-EECCCCCc----hhhHhhcCc--eecCCHHHHhhc--CCEEEEcCCCCH
Confidence            5899999999999988888776   88877 46876532    122334454  357899999987  899999999765


Q ss_pred             c
Q 017143           87 H   87 (376)
Q Consensus        87 h   87 (376)
                      +
T Consensus       261 ~  261 (385)
T PRK07574        261 E  261 (385)
T ss_pred             H
Confidence            4

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=97.07  E-value=0.0067  Score=55.41  Aligned_cols=74  Identities=22%  Similarity=0.312  Sum_probs=49.6

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh----------cCC-C----------CCccCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA----------FDW-P----------LKVFPG   65 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~----------~~~-~----------~~~~~~   65 (376)
                      -||+|||+|.||......++..   +.+|+ ++|++++.++++.+..++          .+. .          +...++
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~---G~~V~-l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~   79 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFART---GYDVT-IVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTS   79 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhc---CCeEE-EEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCC
Confidence            5799999999999988777764   67755 689999876544331111          011 0          123345


Q ss_pred             HHHHhhCCCCCEEEEeCCCCcc
Q 017143           66 HQELLDSGLCDVVVVSTPNMTH   87 (376)
Q Consensus        66 ~~~~l~~~~~D~V~i~t~~~~h   87 (376)
                      + +.+++  .|+|+.+.|++..
T Consensus        80 ~-~~~~~--aDlVieav~e~~~   98 (291)
T PRK06035         80 Y-ESLSD--ADFIVEAVPEKLD   98 (291)
T ss_pred             H-HHhCC--CCEEEEcCcCcHH
Confidence            5 44544  8999999999863

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.06  E-value=0.0017  Score=58.96  Aligned_cols=123  Identities=20%  Similarity=0.180  Sum_probs=74.6

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCC--C---CCccCCHHHHhhCCCCCEEEEe
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDW--P---LKVFPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~l~~~~~D~V~i~   81 (376)
                      -++.|||+|..|+..+..+...   ++.-+.|++|+.+   ++++++++++-  +   +..++++.+.+.+  .|+|+.+
T Consensus       128 k~vlIlGaGGaaraia~aL~~~---G~~~I~I~nR~~~---ka~~la~~l~~~~~~~~~~~~~~~~~~~~~--aDiVIna  199 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTL---GVERLTIFDVDPA---RAAALADELNARFPAARATAGSDLAAALAA--ADGLVHA  199 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHc---CCCEEEEECCCHH---HHHHHHHHHHhhCCCeEEEeccchHhhhCC--CCEEEEC
Confidence            4899999999999998888876   5654678999987   56666655421  1   1223444455544  8999999


Q ss_pred             CCCCccH----HHHHHHHcCCCCCeEEEe---cCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHH
Q 017143           82 TPNMTHY----QILMDIINHPKPHHVLVE---KPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLI  147 (376)
Q Consensus        82 t~~~~h~----~~~~~al~~~~g~~Vl~E---KP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k  147 (376)
                      ||-..+.    .+-...++  .+. +.++   +|.-      -.+.+.|+++ |..+.-|............+
T Consensus       200 Tp~Gm~~~~~~~~~~~~l~--~~~-~v~DivY~P~~------T~ll~~A~~~-G~~~~~G~~ML~~Qa~~~f~  262 (284)
T PRK12549        200 TPTGMAKHPGLPLPAELLR--PGL-WVADIVYFPLE------TELLRAARAL-GCRTLDGGGMAVFQAVDAFE  262 (284)
T ss_pred             CcCCCCCCCCCCCCHHHcC--CCc-EEEEeeeCCCC------CHHHHHHHHC-CCeEecCHHHHHHHHHHHHH
Confidence            9965432    12223344  333 2222   3432      1366666444 77777776655544444433

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=97.04  E-value=0.0084  Score=56.26  Aligned_cols=139  Identities=16%  Similarity=0.114  Sum_probs=84.2

Q ss_pred             eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC----C-HHHHhhC---CCCCEEE
Q 017143            8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP----G-HQELLDS---GLCDVVV   79 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~l~~---~~~D~V~   79 (376)
                      +++|+|+|.+|...+..++..   +...+.+.|+++++++.++++   .+.+ ....    + .+.+++.   ..+|+|+
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~---Ga~~Viv~d~~~~Rl~~A~~~---~g~~-~~~~~~~~~~~~~~~~~t~g~g~D~vi  243 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLL---GASVVIVVDRSPERLELAKEA---GGAD-VVVNPSEDDAGAEILELTGGRGADVVI  243 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHc---CCceEEEeCCCHHHHHHHHHh---CCCe-EeecCccccHHHHHHHHhCCCCCCEEE
Confidence            799999999999876665555   555555679999876655542   3332 1111    1 2222232   2589999


Q ss_pred             EeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCce
Q 017143           80 VSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQV  158 (376)
Q Consensus        80 i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i  158 (376)
                      -|+........++++++.+ |.-+++=-+.....  ...+.... .+ ++.+.-++.......+..+.+++.+|++---
T Consensus       244 e~~G~~~~~~~ai~~~r~g-G~v~~vGv~~~~~~--~~~~~~~~-~k-el~l~gs~~~~~~~~~~~~~~ll~~g~i~~~  317 (350)
T COG1063         244 EAVGSPPALDQALEALRPG-GTVVVVGVYGGEDI--PLPAGLVV-SK-ELTLRGSLRPSGREDFERALDLLASGKIDPE  317 (350)
T ss_pred             ECCCCHHHHHHHHHHhcCC-CEEEEEeccCCccC--ccCHHHHH-hc-ccEEEeccCCCCcccHHHHHHHHHcCCCChh
Confidence            9999766677888888843 55555543332211  12233334 33 4455554333334578889999999886533

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.04  E-value=0.0017  Score=62.02  Aligned_cols=72  Identities=19%  Similarity=0.349  Sum_probs=55.7

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcC-CCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFD-WPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      ..|+.|||+|.+|+..+..+...   ++.-+.|+.|+.+   ++++++++++ ..+..|+++.+++.+  .|+|+.||+.
T Consensus       181 ~kkvlviGaG~~a~~va~~L~~~---g~~~I~V~nRt~~---ra~~La~~~~~~~~~~~~~l~~~l~~--aDiVI~aT~a  252 (414)
T PRK13940        181 SKNVLIIGAGQTGELLFRHVTAL---APKQIMLANRTIE---KAQKITSAFRNASAHYLSELPQLIKK--ADIIIAAVNV  252 (414)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHc---CCCEEEEECCCHH---HHHHHHHHhcCCeEecHHHHHHHhcc--CCEEEECcCC
Confidence            46899999999999988888775   6656678999887   7888988886 332345666666765  8999999975


Q ss_pred             C
Q 017143           85 M   85 (376)
Q Consensus        85 ~   85 (376)
                      .
T Consensus       253 ~  253 (414)
T PRK13940        253 L  253 (414)
T ss_pred             C
Confidence            3

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.00  E-value=0.0048  Score=56.82  Aligned_cols=78  Identities=17%  Similarity=0.246  Sum_probs=54.9

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHH-------HhcCCC-------CCccCCHHHHhhC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLA-------NAFDWP-------LKVFPGHQELLDS   72 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~-------~~~~~~-------~~~~~~~~~~l~~   72 (376)
                      -||||||+|.||......++..   +++|+ ++|++++..+.+.+..       .+.+..       +...+++++++++
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~a---G~~V~-l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~   83 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAH---GLDVV-AWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVAD   83 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhC---CCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcC
Confidence            5799999999999988877764   89977 7899987654432210       111110       2456788888876


Q ss_pred             CCCCEEEEeCCCCccHHH
Q 017143           73 GLCDVVVVSTPNMTHYQI   90 (376)
Q Consensus        73 ~~~D~V~i~t~~~~h~~~   90 (376)
                        .|+|+-+.|.......
T Consensus        84 --aDlViEavpE~l~vK~   99 (321)
T PRK07066         84 --ADFIQESAPEREALKL   99 (321)
T ss_pred             --CCEEEECCcCCHHHHH
Confidence              8999999998765433

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.00  E-value=0.0019  Score=58.56  Aligned_cols=127  Identities=17%  Similarity=0.153  Sum_probs=77.0

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC--CCccCCHHHHhhCCCCCEEEEeCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP--LKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      .-++.|+|+|.+|+..+..+...   ++.-+.|++|+.+   ++++++++++..  +....+..+.+.  +.|+|+-+||
T Consensus       123 ~k~vlVlGaGg~a~ai~~aL~~~---g~~~V~v~~R~~~---~a~~l~~~~~~~~~~~~~~~~~~~~~--~~DivInaTp  194 (278)
T PRK00258        123 GKRILILGAGGAARAVILPLLDL---GVAEITIVNRTVE---RAEELAKLFGALGKAELDLELQEELA--DFDLIINATS  194 (278)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHc---CCCEEEEEeCCHH---HHHHHHHHhhhccceeecccchhccc--cCCEEEECCc
Confidence            35899999999999999998875   5444668899987   566666655411  011012234443  4899999999


Q ss_pred             CCccH-----HHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHH
Q 017143           84 NMTHY-----QILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLI  147 (376)
Q Consensus        84 ~~~h~-----~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k  147 (376)
                      -..+.     ++....+.  .+ .++++-  .-++.+ -.|.+.|+++ |+.+.-|............+
T Consensus       195 ~g~~~~~~~~~~~~~~l~--~~-~~v~Di--vY~P~~-T~ll~~A~~~-G~~~~~G~~Ml~~Qa~~~f~  256 (278)
T PRK00258        195 AGMSGELPLPPLPLSLLR--PG-TIVYDM--IYGPLP-TPFLAWAKAQ-GARTIDGLGMLVHQAAEAFE  256 (278)
T ss_pred             CCCCCCCCCCCCCHHHcC--CC-CEEEEe--ecCCCC-CHHHHHHHHC-cCeecCCHHHHHHHHHHHHH
Confidence            87763     23345566  43 333332  112222 2466777444 88888777666544444443

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=96.98  E-value=0.0036  Score=55.70  Aligned_cols=76  Identities=24%  Similarity=0.284  Sum_probs=56.0

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      -+|+|||+|.-|+.|..+|+..   +++|+.-.-....    ..+.|.+-|+.  + -+++|+...  .|+|++.+|+..
T Consensus        19 K~iaIIGYGsQG~ahalNLRDS---GlnViiGlr~g~~----s~~kA~~dGf~--V-~~v~ea~k~--ADvim~L~PDe~   86 (338)
T COG0059          19 KKVAIIGYGSQGHAQALNLRDS---GLNVIIGLRKGSS----SWKKAKEDGFK--V-YTVEEAAKR--ADVVMILLPDEQ   86 (338)
T ss_pred             CeEEEEecChHHHHHHhhhhhc---CCcEEEEecCCch----hHHHHHhcCCE--e-ecHHHHhhc--CCEEEEeCchhh
Confidence            5899999999999998777664   7776543333222    23445566765  5 458899987  899999999999


Q ss_pred             cHHHHHHH
Q 017143           87 HYQILMDI   94 (376)
Q Consensus        87 h~~~~~~a   94 (376)
                      |.++-...
T Consensus        87 q~~vy~~~   94 (338)
T COG0059          87 QKEVYEKE   94 (338)
T ss_pred             HHHHHHHH
Confidence            98887743

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=96.96  E-value=0.0084  Score=54.64  Aligned_cols=149  Identities=11%  Similarity=0.137  Sum_probs=97.4

Q ss_pred             ceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh-cCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143            6 TVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA-FDWPLKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         6 ~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      ++||||+| +|..|+.++..|.+. ...++.+.++.....-=.+..++..+ +.    .-++..++..-.++|+|+-|.+
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~-~f~~~~~~~~AS~rSaG~~~~~f~~~~~~----v~~~~~~~~~~~~~Divf~~ag   75 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEER-HFPFEELVLLASARSAGKKYIEFGGKSIG----VPEDAADEFVFSDVDIVFFAAG   75 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhc-CCCcceEEEEecccccCCccccccCcccc----CccccccccccccCCEEEEeCc
Confidence            47999999 598999999888873 27777555554332200011222211 12    2233333444457999999999


Q ss_pred             CCccHHHHHHHHcCCCCCeEEE---------ecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCC
Q 017143           84 NMTHYQILMDIINHPKPHHVLV---------EKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGS  154 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~---------EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~  154 (376)
                      .+.-.+++.++.+  +|.-|+-         +-|+-...--...|.+.- ++ | .+..+-|+.-...+..++-+.+...
T Consensus        76 ~~~s~~~~p~~~~--~G~~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~-~r-g-~IianpNCst~~l~~aL~PL~~~~~  150 (334)
T COG0136          76 GSVSKEVEPKAAE--AGCVVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQ-KR-G-FIIANPNCSTIQLVLALKPLHDAFG  150 (334)
T ss_pred             hHHHHHHHHHHHH--cCCEEEeCCcccccCCCCCEecCCcCHHHHHhhh-hC-C-CEEECCChHHHHHHHHHHHHHhhcC
Confidence            9888999999999  8876665         335433222222366666 44 5 7888999999999999999998666


Q ss_pred             CCceEEEEEe
Q 017143          155 IGQVKMVAIR  164 (376)
Q Consensus       155 iG~i~~~~~~  164 (376)
                      |-+|...+.+
T Consensus       151 i~~v~VsTyQ  160 (334)
T COG0136         151 IKRVVVSTYQ  160 (334)
T ss_pred             ceEEEEEEee
Confidence            6666655554

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.95  E-value=0.004  Score=56.58  Aligned_cols=116  Identities=18%  Similarity=0.231  Sum_probs=75.5

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      -+++|||+|.+|+..+..++..   +.+++ ++++++++.+   .. .+.+.....++++++++.+  .|+|+.++|...
T Consensus       152 k~v~IiG~G~iG~avA~~L~~~---G~~V~-v~~R~~~~~~---~~-~~~g~~~~~~~~l~~~l~~--aDiVint~P~~i  221 (287)
T TIGR02853       152 SNVMVLGFGRTGMTIARTFSAL---GARVF-VGARSSADLA---RI-TEMGLIPFPLNKLEEKVAE--IDIVINTIPALV  221 (287)
T ss_pred             CEEEEEcChHHHHHHHHHHHHC---CCEEE-EEeCCHHHHH---HH-HHCCCeeecHHHHHHHhcc--CCEEEECCChHH
Confidence            5899999999999988888876   56755 7888876432   22 2345432234567777765  899999998653


Q ss_pred             cHHHHHHHHcCCCCCeEEEe---cCCCCCHHHHHHHHHHHHhCCCeEEE--EeeccccCHHH
Q 017143           87 HYQILMDIINHPKPHHVLVE---KPLCTTVADCKKVVDAARKRPDILVQ--VGLEYRYMPPV  143 (376)
Q Consensus        87 h~~~~~~al~~~~g~~Vl~E---KP~a~~~~e~~~l~~~a~~~~~~~~~--v~~~~r~~p~~  143 (376)
                      --.-..+.++  .+ .++++   +|..++.       +.|++ .|+...  .|....+.|..
T Consensus       222 i~~~~l~~~k--~~-aliIDlas~Pg~tdf-------~~Ak~-~G~~a~~~~glPg~~ap~t  272 (287)
T TIGR02853       222 LTADVLSKLP--KH-AVIIDLASKPGGTDF-------EYAKK-RGIKALLAPGLPGIVAPKT  272 (287)
T ss_pred             hCHHHHhcCC--CC-eEEEEeCcCCCCCCH-------HHHHH-CCCEEEEeCCCCcccCchh
Confidence            2222344455  43 45553   6766654       34533 366655  67788888843

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.95  E-value=0.0041  Score=56.79  Aligned_cols=115  Identities=16%  Similarity=0.215  Sum_probs=74.2

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      .-|++|||+|.+|+..+..++.+   +.+++ ++++++++.    +.++.+|.....++++.+.+..  .|+|+.++|+.
T Consensus       152 g~kvlViG~G~iG~~~a~~L~~~---Ga~V~-v~~r~~~~~----~~~~~~G~~~~~~~~l~~~l~~--aDiVI~t~p~~  221 (296)
T PRK08306        152 GSNVLVLGFGRTGMTLARTLKAL---GANVT-VGARKSAHL----ARITEMGLSPFHLSELAEEVGK--IDIIFNTIPAL  221 (296)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC---CCEEE-EEECCHHHH----HHHHHcCCeeecHHHHHHHhCC--CCEEEECCChh
Confidence            46999999999999988888876   66655 678887632    2344566542234566677765  89999999865


Q ss_pred             ccHHHHHHHHcCCCCCeEEEe---cCCCCCHHHHHHHHHHHHhCCCeEEE--EeeccccCH
Q 017143           86 THYQILMDIINHPKPHHVLVE---KPLCTTVADCKKVVDAARKRPDILVQ--VGLEYRYMP  141 (376)
Q Consensus        86 ~h~~~~~~al~~~~g~~Vl~E---KP~a~~~~e~~~l~~~a~~~~~~~~~--v~~~~r~~p  141 (376)
                      .-.+-..+.++  .| .++++   .|..++.       +.+ ++.|+...  .+...++.|
T Consensus       222 ~i~~~~l~~~~--~g-~vIIDla~~pggtd~-------~~a-~~~Gv~~~~~~~lpg~vap  271 (296)
T PRK08306        222 VLTKEVLSKMP--PE-ALIIDLASKPGGTDF-------EYA-EKRGIKALLAPGLPGKVAP  271 (296)
T ss_pred             hhhHHHHHcCC--CC-cEEEEEccCCCCcCe-------eeh-hhCCeEEEEECCCCccCCH
Confidence            33333334455  43 45554   3433332       355 44577776  777778866

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.94  E-value=0.0056  Score=55.68  Aligned_cols=79  Identities=13%  Similarity=0.159  Sum_probs=54.8

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHH--------HHHhcCCC----------CCccCCHHH
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALK--------LANAFDWP----------LKVFPGHQE   68 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--------~~~~~~~~----------~~~~~~~~~   68 (376)
                      -||||||+|.||......++..   +++|+ ++|++++.++++.+        +.++..+.          +...+++++
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~---G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~   81 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARA---GVDVL-VFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD   81 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhC---CCEEE-EEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH
Confidence            4899999999999988777764   88866 78999987655322        22222211          125677744


Q ss_pred             HhhCCCCCEEEEeCCCCccHHHHH
Q 017143           69 LLDSGLCDVVVVSTPNMTHYQILM   92 (376)
Q Consensus        69 ~l~~~~~D~V~i~t~~~~h~~~~~   92 (376)
                       +++  .|+|+-|.|.+.......
T Consensus        82 -~~~--~d~ViEav~E~~~~K~~l  102 (286)
T PRK07819         82 -FAD--RQLVIEAVVEDEAVKTEI  102 (286)
T ss_pred             -hCC--CCEEEEecccCHHHHHHH
Confidence             544  899999999987755544

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=96.93  E-value=0.002  Score=62.00  Aligned_cols=82  Identities=26%  Similarity=0.267  Sum_probs=58.0

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ..+|+|||+|.+|...+..+...   ++.-+.+++++++   ++.++++++|..+..+++..+.+..  .|+|+.||+..
T Consensus       182 ~~~vlViGaG~iG~~~a~~L~~~---G~~~V~v~~r~~~---ra~~la~~~g~~~~~~~~~~~~l~~--aDvVI~aT~s~  253 (423)
T PRK00045        182 GKKVLVIGAGEMGELVAKHLAEK---GVRKITVANRTLE---RAEELAEEFGGEAIPLDELPEALAE--ADIVISSTGAP  253 (423)
T ss_pred             CCEEEEECchHHHHHHHHHHHHC---CCCeEEEEeCCHH---HHHHHHHHcCCcEeeHHHHHHHhcc--CCEEEECCCCC
Confidence            46899999999999988888764   6655668899887   6677888877432223455556654  89999999854


Q ss_pred             c---cHHHHHHHH
Q 017143           86 T---HYQILMDII   95 (376)
Q Consensus        86 ~---h~~~~~~al   95 (376)
                      .   ..+.+..++
T Consensus       254 ~~~i~~~~l~~~~  266 (423)
T PRK00045        254 HPIIGKGMVERAL  266 (423)
T ss_pred             CcEEcHHHHHHHH
Confidence            3   344555554

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.92  E-value=0.0083  Score=52.05  Aligned_cols=111  Identities=14%  Similarity=0.147  Sum_probs=71.6

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh----------hhHHHHHHHHHhcCCCCCcc-----CCHHHH
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL----------QSRQQALKLANAFDWPLKVF-----PGHQEL   69 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~----------~~~~~~~~~~~~~~~~~~~~-----~~~~~~   69 (376)
                      +..||+|.|+|.+|...+..|.+.   +..+++|+|.+.          +.   .+...+..++.  .|     .+-+++
T Consensus        22 ~g~~vaIqGfGnVG~~~a~~L~~~---G~~vV~vsD~~g~i~~~Gld~~~l---~~~~~~~~~~~--~~~~~~~~~~~~l   93 (217)
T cd05211          22 EGLTVAVQGLGNVGWGLAKKLAEE---GGKVLAVSDPDGYIYDPGITTEEL---INYAVALGGSA--RVKVQDYFPGEAI   93 (217)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc---CCEEEEEEcCCCcEECCCCCHHHH---HHHHHhhCCcc--ccCcccccCcccc
Confidence            468999999999999888888775   899999999987          53   22222233332  22     233566


Q ss_pred             hhCCCCCEEEEeCCCC-ccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 017143           70 LDSGLCDVVVVSTPNM-THYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQV  133 (376)
Q Consensus        70 l~~~~~D~V~i~t~~~-~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v  133 (376)
                      +.. ++|+++-|++.. .+.+.+.+ ++    ..+++|+-=.....++.++++   ++ |+.+..
T Consensus        94 ~~~-~~DVlipaA~~~~i~~~~a~~-l~----a~~V~e~AN~p~t~~a~~~L~---~~-Gi~v~P  148 (217)
T cd05211          94 LGL-DVDIFAPCALGNVIDLENAKK-LK----AKVVAEGANNPTTDEALRILH---ER-GIVVAP  148 (217)
T ss_pred             eec-cccEEeeccccCccChhhHhh-cC----ccEEEeCCCCCCCHHHHHHHH---HC-CcEEEC
Confidence            665 699999999865 44333332 33    458888754443446666653   33 655443

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.91  E-value=0.0061  Score=56.95  Aligned_cols=101  Identities=21%  Similarity=0.184  Sum_probs=64.2

Q ss_pred             CCC-CCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh------c--CC--C--CCccCCHH
Q 017143            1 MAA-NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA------F--DW--P--LKVFPGHQ   67 (376)
Q Consensus         1 m~~-~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~------~--~~--~--~~~~~~~~   67 (376)
                      |++ ..++||+|||+|.||......+.+.   + .++ ++.++++.   .+++.+.      +  ++  +  +...++.+
T Consensus         1 ~~~~~~~mkI~IiGaGa~G~alA~~La~~---g-~v~-l~~~~~~~---~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~   72 (341)
T PRK12439          1 MAAAKREPKVVVLGGGSWGTTVASICARR---G-PTL-QWVRSAET---ADDINDNHRNSRYLGNDVVLSDTLRATTDFA   72 (341)
T ss_pred             CccccCCCeEEEECCCHHHHHHHHHHHHC---C-CEE-EEeCCHHH---HHHHHhcCCCcccCCCCcccCCCeEEECCHH
Confidence            533 4568999999999999888877775   3 333 45577763   3333321      1  11  1  13456777


Q ss_pred             HHhhCCCCCEEEEeCCCCccHHHHHHHHcCC-CCC-eEEEecCCCC
Q 017143           68 ELLDSGLCDVVVVSTPNMTHYQILMDIINHP-KPH-HVLVEKPLCT  111 (376)
Q Consensus        68 ~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~-~g~-~Vl~EKP~a~  111 (376)
                      +.+++  .|+|++++|+....+.+.+....- ... -|.+-|-+..
T Consensus        73 ~a~~~--aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~  116 (341)
T PRK12439         73 EAANC--ADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQ  116 (341)
T ss_pred             HHHhc--CCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence            77765  899999999887777666543210 232 3567886653

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=96.85  E-value=0.0026  Score=60.08  Aligned_cols=139  Identities=15%  Similarity=0.153  Sum_probs=81.0

Q ss_pred             CceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc----CCCCCccCCHHHH-hhCCCCCEE
Q 017143            5 DTVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF----DWPLKVFPGHQEL-LDSGLCDVV   78 (376)
Q Consensus         5 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-l~~~~~D~V   78 (376)
                      +++||+|||+ |..|...++.|..+  |.++|+.+......    .+.+...+    +.+...+.+++.. ++  ++|+|
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~h--P~~el~~l~s~~sa----G~~i~~~~~~l~~~~~~~~~~~~~~~~~--~~DvV  108 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANH--PDFEITVMTADRKA----GQSFGSVFPHLITQDLPNLVAVKDADFS--DVDAV  108 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhC--CCCeEEEEEChhhc----CCCchhhCccccCccccceecCCHHHhc--CCCEE
Confidence            4679999995 89999999999988  99999998764221    22222111    1111123333332 33  49999


Q ss_pred             EEeCCCCccHHHHHHHHcCCCCCeEEEec-----------------CCCC---C---HHHHHHHHHHHHhCCCeEEEEee
Q 017143           79 VVSTPNMTHYQILMDIINHPKPHHVLVEK-----------------PLCT---T---VADCKKVVDAARKRPDILVQVGL  135 (376)
Q Consensus        79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~EK-----------------P~a~---~---~~e~~~l~~~a~~~~~~~~~v~~  135 (376)
                      +.++|+....+++.+ ++  +|+.|+-=.                 |...   +   ....-|+.+.-.+  +..+..+.
T Consensus       109 f~Alp~~~s~~i~~~-~~--~g~~VIDlSs~fRl~~~~~y~~~y~~p~~~pe~~~~~~yglpE~~r~~i~--~~~iIAnP  183 (381)
T PLN02968        109 FCCLPHGTTQEIIKA-LP--KDLKIVDLSADFRLRDIAEYEEWYGHPHRAPELQKEAVYGLTELQREEIK--SARLVANP  183 (381)
T ss_pred             EEcCCHHHHHHHHHH-Hh--CCCEEEEcCchhccCCcccchhccCCCCCCcccchhhhcccchhCHHHhc--CCCEEECC
Confidence            999999888888877 47  666544311                 1110   0   0111112111101  22344554


Q ss_pred             ccccCHHHHHHHHHHHcCCCC
Q 017143          136 EYRYMPPVAKLIQIVKSGSIG  156 (376)
Q Consensus       136 ~~r~~p~~~~~k~~i~~g~iG  156 (376)
                      ++--......++-+++.+.|.
T Consensus       184 gC~~t~~~laL~PL~~~~~i~  204 (381)
T PLN02968        184 GCYPTGIQLPLVPLVKAGLIE  204 (381)
T ss_pred             CCHHHHHHHHHHHHHHcCCCC
Confidence            444466777788888988884

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=96.83  E-value=0.014  Score=53.38  Aligned_cols=74  Identities=18%  Similarity=0.267  Sum_probs=49.8

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHH--------HHHh-----------cCCCCCccCCHH
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALK--------LANA-----------FDWPLKVFPGHQ   67 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--------~~~~-----------~~~~~~~~~~~~   67 (376)
                      .||+|||+|.||...+..+...   +.+|+ ++|++++..+++++        +.++           ++. ....++++
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~---G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~   79 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAA---GMDVW-LLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGR-IRCTTNLE   79 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhc---CCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhc-eEeeCCHH
Confidence            4799999999999988888775   67765 68999886554322        2211           111 12334554


Q ss_pred             HHhhCCCCCEEEEeCCCCccH
Q 017143           68 ELLDSGLCDVVVVSTPNMTHY   88 (376)
Q Consensus        68 ~~l~~~~~D~V~i~t~~~~h~   88 (376)
                       .+++  .|+|+.|.|...+.
T Consensus        80 -~~~~--aD~Vieav~e~~~~   97 (295)
T PLN02545         80 -ELRD--ADFIIEAIVESEDL   97 (295)
T ss_pred             -HhCC--CCEEEEcCccCHHH
Confidence             4554  89999999966553

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.82  E-value=0.0051  Score=57.18  Aligned_cols=80  Identities=19%  Similarity=0.306  Sum_probs=55.0

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh-----c--CC--C--CCccCCHHHHhhCCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA-----F--DW--P--LKVFPGHQELLDSGLC   75 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~-----~--~~--~--~~~~~~~~~~l~~~~~   75 (376)
                      |||+|||+|.+|......|.+.   +.+|. +++++++.   .+.+.+.     +  +.  +  ++.+.+.++.+.. +.
T Consensus         1 MkI~IiGaGa~G~ala~~L~~~---g~~V~-l~~r~~~~---~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~   72 (326)
T PRK14620          1 MKISILGAGSFGTAIAIALSSK---KISVN-LWGRNHTT---FESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSD-NA   72 (326)
T ss_pred             CEEEEECcCHHHHHHHHHHHHC---CCeEE-EEecCHHH---HHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhC-CC
Confidence            3799999999999888877764   66765 88888764   3333321     1  11  1  2345677777643 38


Q ss_pred             CEEEEeCCCCccHHHHHHH
Q 017143           76 DVVVVSTPNMTHYQILMDI   94 (376)
Q Consensus        76 D~V~i~t~~~~h~~~~~~a   94 (376)
                      |+|+|++|+....+.+.+.
T Consensus        73 Dliiiavks~~~~~~l~~l   91 (326)
T PRK14620         73 TCIILAVPTQQLRTICQQL   91 (326)
T ss_pred             CEEEEEeCHHHHHHHHHHH
Confidence            9999999988776666554

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.82  E-value=0.0054  Score=56.52  Aligned_cols=63  Identities=16%  Similarity=0.094  Sum_probs=48.8

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ++||+|||+|.+|......+...   +.+|. ++++++.                   .+.++++++  .|+|++++|..
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~---G~~V~-~~~r~~~-------------------~~~~~~~~~--advvi~~vp~~   58 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASAN---GHRVR-VWSRRSG-------------------LSLAAVLAD--ADVIVSAVSMK   58 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHC---CCEEE-EEeCCCC-------------------CCHHHHHhc--CCEEEEECChH
Confidence            47899999999999988888775   67765 7887642                   356677765  89999999997


Q ss_pred             ccHHHHHH
Q 017143           86 THYQILMD   93 (376)
Q Consensus        86 ~h~~~~~~   93 (376)
                      .+.+++..
T Consensus        59 ~~~~v~~~   66 (308)
T PRK14619         59 GVRPVAEQ   66 (308)
T ss_pred             HHHHHHHH
Confidence            66665544

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=96.81  E-value=0.007  Score=55.53  Aligned_cols=77  Identities=21%  Similarity=0.216  Sum_probs=49.6

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC---------CccCCHHHHhhCCCCCE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL---------KVFPGHQELLDSGLCDV   77 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~~~D~   77 (376)
                      +||+|||+|.+|......|.+.   +.+|+ +++++++.   .+.+.+. |+.+         ...++.+++   .++|+
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~---g~~V~-~~~r~~~~---~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~---~~~d~   69 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQA---GHDVT-LVARRGAH---LDALNEN-GLRLEDGEITVPVLAADDPAEL---GPQDL   69 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC---CCeEE-EEECChHH---HHHHHHc-CCcccCCceeecccCCCChhHc---CCCCE
Confidence            4799999999999888877764   56765 55676653   3333322 3311         234455554   34899


Q ss_pred             EEEeCCCCccHHHHHHH
Q 017143           78 VVVSTPNMTHYQILMDI   94 (376)
Q Consensus        78 V~i~t~~~~h~~~~~~a   94 (376)
                      |++++++....+.+...
T Consensus        70 vila~k~~~~~~~~~~l   86 (304)
T PRK06522         70 VILAVKAYQLPAALPSL   86 (304)
T ss_pred             EEEecccccHHHHHHHH
Confidence            99999987665544433

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.81  E-value=0.003  Score=60.70  Aligned_cols=83  Identities=25%  Similarity=0.245  Sum_probs=57.9

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      .-+++|||+|.+|...+..+...   ++.-+.+++++.+   ++.+++++++.....+++..+++..  .|+|+.||+..
T Consensus       180 ~~~VlViGaG~iG~~~a~~L~~~---G~~~V~v~~rs~~---ra~~la~~~g~~~i~~~~l~~~l~~--aDvVi~aT~s~  251 (417)
T TIGR01035       180 GKKALLIGAGEMGELVAKHLLRK---GVGKILIANRTYE---RAEDLAKELGGEAVKFEDLEEYLAE--ADIVISSTGAP  251 (417)
T ss_pred             CCEEEEECChHHHHHHHHHHHHC---CCCEEEEEeCCHH---HHHHHHHHcCCeEeeHHHHHHHHhh--CCEEEECCCCC
Confidence            36899999999999988888775   5444557899887   5667777776431223556666654  89999999755


Q ss_pred             cc---HHHHHHHHc
Q 017143           86 TH---YQILMDIIN   96 (376)
Q Consensus        86 ~h---~~~~~~al~   96 (376)
                      .+   .+.+..++.
T Consensus       252 ~~ii~~e~l~~~~~  265 (417)
T TIGR01035       252 HPIVSKEDVERALR  265 (417)
T ss_pred             CceEcHHHHHHHHh
Confidence            43   344555544

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK08818 prephenate dehydrogenase; Provisional

Probab=96.80  E-value=0.0043  Score=58.15  Aligned_cols=68  Identities=24%  Similarity=0.267  Sum_probs=53.2

Q ss_pred             ceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      +.+|+|||+ |.||......+++.  .+.+|++ +|++.                 ....+.++++.+  .|+|++|+|.
T Consensus         4 ~~~I~IIGl~GliGgslA~alk~~--~~~~V~g-~D~~d-----------------~~~~~~~~~v~~--aDlVilavPv   61 (370)
T PRK08818          4 QPVVGIVGSAGAYGRWLARFLRTR--MQLEVIG-HDPAD-----------------PGSLDPATLLQR--ADVLIFSAPI   61 (370)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhc--CCCEEEE-EcCCc-----------------cccCCHHHHhcC--CCEEEEeCCH
Confidence            689999999 99999999999875  4778775 67632                 133567777765  8999999998


Q ss_pred             CccHHHHHHHH
Q 017143           85 MTHYQILMDII   95 (376)
Q Consensus        85 ~~h~~~~~~al   95 (376)
                      ..-.+++.+..
T Consensus        62 ~~~~~~l~~l~   72 (370)
T PRK08818         62 RHTAALIEEYV   72 (370)
T ss_pred             HHHHHHHHHHh
Confidence            87777776654

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.75  E-value=0.024  Score=51.11  Aligned_cols=146  Identities=21%  Similarity=0.218  Sum_probs=90.1

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHH---hh----CCCCCEEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQEL---LD----SGLCDVVV   79 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~----~~~~D~V~   79 (376)
                      -|+.|+|+|.+|...+...+.+   +..-+.+.|.++.+++.|+++..+.-.+.....+.+++   ++    ...+|.++
T Consensus       171 s~vLV~GAGPIGl~t~l~Aka~---GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~  247 (354)
T KOG0024|consen  171 SKVLVLGAGPIGLLTGLVAKAM---GASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTF  247 (354)
T ss_pred             CeEEEECCcHHHHHHHHHHHHc---CCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEE
Confidence            5899999999998877777777   44445578999987766655433211111122233332   22    24499999


Q ss_pred             EeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCH-HHHHHHHHHHcCCCCce
Q 017143           80 VSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMP-PVAKLIQIVKSGSIGQV  158 (376)
Q Consensus        80 i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p-~~~~~k~~i~~g~iG~i  158 (376)
                      -||--+.-.+.++.|++.+ |.-|+..-  .....+.. +.+.+ -+ .+. +.| .+||.. .+..+-+++.+|++--=
T Consensus       248 dCsG~~~~~~aai~a~r~g-Gt~vlvg~--g~~~~~fp-i~~v~-~k-E~~-~~g-~fry~~~~y~~ai~li~sGki~~k  319 (354)
T KOG0024|consen  248 DCSGAEVTIRAAIKATRSG-GTVVLVGM--GAEEIQFP-IIDVA-LK-EVD-LRG-SFRYCNGDYPTAIELVSSGKIDVK  319 (354)
T ss_pred             EccCchHHHHHHHHHhccC-CEEEEecc--CCCccccC-hhhhh-hh-eee-eee-eeeeccccHHHHHHHHHcCCcCch
Confidence            9999998899999999964 66555541  11111221 23333 22 222 233 567766 88999999999887533


Q ss_pred             EEEEE
Q 017143          159 KMVAI  163 (376)
Q Consensus       159 ~~~~~  163 (376)
                      -.++.
T Consensus       320 ~lIT~  324 (354)
T KOG0024|consen  320 PLITH  324 (354)
T ss_pred             hheec
Confidence            33433

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=96.72  E-value=0.003  Score=58.81  Aligned_cols=140  Identities=11%  Similarity=0.084  Sum_probs=84.9

Q ss_pred             CceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHH-HHhhCCCCCEEEEeC
Q 017143            5 DTVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQ-ELLDSGLCDVVVVST   82 (376)
Q Consensus         5 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~D~V~i~t   82 (376)
                      +++||+|||+ |..|...++.|....-|.+++..+.+.....    +.+.. .+.+ ..+.+.+ +.+.  ++|+|+.|+
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaG----k~~~~-~~~~-~~v~~~~~~~~~--~~D~vf~a~   77 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAG----KKVTF-EGRD-YTVEELTEDSFD--GVDIALFSA   77 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCC----Ceeee-cCce-eEEEeCCHHHHc--CCCEEEECC
Confidence            5799999995 8889999988887211889998887653321    11111 1222 2233332 3343  499999999


Q ss_pred             CCCccHHHHHHHHcCCCCCeEEE---------ecCCCC---CHHHHHHHHHHHHh-CCCeEEEEeeccccCHHHHHHHHH
Q 017143           83 PNMTHYQILMDIINHPKPHHVLV---------EKPLCT---TVADCKKVVDAARK-RPDILVQVGLEYRYMPPVAKLIQI  149 (376)
Q Consensus        83 ~~~~h~~~~~~al~~~~g~~Vl~---------EKP~a~---~~~e~~~l~~~a~~-~~~~~~~v~~~~r~~p~~~~~k~~  149 (376)
                      |+....+++.++.+  +|+-|+=         ..|...   +.++   |.. ++. +.+..+..+.++.-......++-+
T Consensus        78 p~~~s~~~~~~~~~--~g~~VIDlS~~fR~~~~~p~~vPEvn~~~---i~~-~~~~~~~~~iIanPgC~~t~~~laL~PL  151 (344)
T PLN02383         78 GGSISKKFGPIAVD--KGAVVVDNSSAFRMEEGVPLVIPEVNPEA---MKH-IKLGKGKGALIANPNCSTIICLMAVTPL  151 (344)
T ss_pred             CcHHHHHHHHHHHh--CCCEEEECCchhhcCCCCceECCCcCHHH---HHh-hhhcccCCcEEECCCcHHHHHHHHHHHH
Confidence            99999999999989  7765542         112221   2232   222 311 111235556565556677788888


Q ss_pred             HHcCCCCce
Q 017143          150 VKSGSIGQV  158 (376)
Q Consensus       150 i~~g~iG~i  158 (376)
                      .+.+.|-+|
T Consensus       152 ~~~~~i~~v  160 (344)
T PLN02383        152 HRHAKVKRM  160 (344)
T ss_pred             HHcCCeeEE
Confidence            887777443

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=96.72  E-value=0.0046  Score=57.03  Aligned_cols=111  Identities=21%  Similarity=0.270  Sum_probs=70.3

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      .++||||+|.+|+.....++..   +++|.+ +|+...+   .  .+...+.  ...++++++|++  .|+|++.+|-..
T Consensus       143 kTvGIiG~G~IG~~va~~l~af---gm~v~~-~d~~~~~---~--~~~~~~~--~~~~~Ld~lL~~--sDiv~lh~PlT~  209 (324)
T COG0111         143 KTVGIIGLGRIGRAVAKRLKAF---GMKVIG-YDPYSPR---E--RAGVDGV--VGVDSLDELLAE--ADILTLHLPLTP  209 (324)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC---CCeEEE-ECCCCch---h--hhccccc--eecccHHHHHhh--CCEEEEcCCCCc
Confidence            5899999999999988888887   999885 7873331   1  1111222  356889999998  799999999532


Q ss_pred             cHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCC
Q 017143           87 HYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIG  156 (376)
Q Consensus        87 h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG  156 (376)
                      -            -+|+       .+.++.    +.. +. |. +++|..+=--=....|.+.+++|+|.
T Consensus       210 e------------T~g~-------i~~~~~----a~M-K~-ga-ilIN~aRG~vVde~aL~~AL~~G~i~  253 (324)
T COG0111         210 E------------TRGL-------INAEEL----AKM-KP-GA-ILINAARGGVVDEDALLAALDSGKIA  253 (324)
T ss_pred             c------------hhcc-------cCHHHH----hhC-CC-Ce-EEEECCCcceecHHHHHHHHHcCCcc
Confidence            1            0111       122222    222 22 43 66665555544567777888875543

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=96.72  E-value=0.044  Score=51.22  Aligned_cols=134  Identities=15%  Similarity=0.182  Sum_probs=80.3

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc----CCHHHHhhC-CCCCEEEEe
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF----PGHQELLDS-GLCDVVVVS   81 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~-~~~D~V~i~   81 (376)
                      -+|.|+|+|.+|...+..++..   +.+.+.++++++++++    +++++|.. .++    .+++++... ..+|+|+-+
T Consensus       171 ~~VlV~G~G~vG~~aiqlak~~---G~~~Vi~~~~~~~~~~----~a~~lGa~-~vi~~~~~~~~~~~~~~g~~D~vid~  242 (343)
T PRK09880        171 KRVFVSGVGPIGCLIVAAVKTL---GAAEIVCADVSPRSLS----LAREMGAD-KLVNPQNDDLDHYKAEKGYFDVSFEV  242 (343)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc---CCcEEEEEeCCHHHHH----HHHHcCCc-EEecCCcccHHHHhccCCCCCEEEEC
Confidence            3789999999999877665554   6654445677777443    44556654 222    235555443 238999999


Q ss_pred             CCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCC
Q 017143           82 TPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIG  156 (376)
Q Consensus        82 t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG  156 (376)
                      +....-.+.+.++++.+ |+-|++--+....  +. .+.... .+ ++.+.-.+  .+...+..+.+++++|.|-
T Consensus       243 ~G~~~~~~~~~~~l~~~-G~iv~~G~~~~~~--~~-~~~~~~-~k-~~~i~g~~--~~~~~~~~~~~l~~~g~i~  309 (343)
T PRK09880        243 SGHPSSINTCLEVTRAK-GVMVQVGMGGAPP--EF-PMMTLI-VK-EISLKGSF--RFTEEFNTAVSWLANGVIN  309 (343)
T ss_pred             CCCHHHHHHHHHHhhcC-CEEEEEccCCCCC--cc-CHHHHH-hC-CcEEEEEe--eccccHHHHHHHHHcCCCC
Confidence            98766677788888853 6666664322111  11 122333 22 33333222  3445678888899888764

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=96.71  E-value=0.023  Score=59.03  Aligned_cols=106  Identities=17%  Similarity=0.187  Sum_probs=63.9

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCC-CcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQ-GVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~-~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      .||+|||+|.+|...+..+...  . ..+ +.++|+++++.+.    +.++|+.....+++++++++  .|+|++|+|++
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~--G~~~~-V~~~d~~~~~~~~----a~~~g~~~~~~~~~~~~~~~--aDvVilavp~~   74 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRER--GLARE-VVAVDRRAKSLEL----AVSLGVIDRGEEDLAEAVSG--ADVIVLAVPVL   74 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhc--CCCCE-EEEEECChhHHHH----HHHCCCCCcccCCHHHHhcC--CCEEEECCCHH
Confidence            6899999999999988888775  2 235 4467998874332    33456421245678888865  89999999987


Q ss_pred             ccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHH
Q 017143           86 THYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDA  122 (376)
Q Consensus        86 ~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~  122 (376)
                      .-.+++.+..+.-....|++.-- +....-.+.+.+.
T Consensus        75 ~~~~vl~~l~~~~~~~~ii~d~~-svk~~~~~~l~~~  110 (735)
T PRK14806         75 AMEKVLADLKPLLSEHAIVTDVG-STKGNVVDAARAV  110 (735)
T ss_pred             HHHHHHHHHHHhcCCCcEEEEcC-CCchHHHHHHHHh
Confidence            43333333222101234666543 3333333444444

>PRK13243 glyoxylate reductase; Reviewed

Probab=96.69  E-value=0.0057  Score=56.87  Aligned_cols=67  Identities=19%  Similarity=0.303  Sum_probs=50.9

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      -.+|||||+|.+|+.....+...   +.+|. ++|+++..   .  ....++.   .+.++++++++  .|+|++++|..
T Consensus       150 gktvgIiG~G~IG~~vA~~l~~~---G~~V~-~~d~~~~~---~--~~~~~~~---~~~~l~ell~~--aDiV~l~lP~t  215 (333)
T PRK13243        150 GKTIGIIGFGRIGQAVARRAKGF---GMRIL-YYSRTRKP---E--AEKELGA---EYRPLEELLRE--SDFVSLHVPLT  215 (333)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHC---CCEEE-EECCCCCh---h--hHHHcCC---EecCHHHHHhh--CCEEEEeCCCC
Confidence            36999999999999988888776   77876 57887652   1  1234454   35689999987  79999999965


Q ss_pred             c
Q 017143           86 T   86 (376)
Q Consensus        86 ~   86 (376)
                      .
T Consensus       216 ~  216 (333)
T PRK13243        216 K  216 (333)
T ss_pred             h
Confidence            4

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.68  E-value=0.0035  Score=58.09  Aligned_cols=140  Identities=11%  Similarity=0.170  Sum_probs=84.8

Q ss_pred             CCCCCceeEEEEeC-ChhhHHHHHHhhhhcCCCcE---EEEEeCCChhhHHHHHHHHHhcCCCCCccC--CHHHHhhCCC
Q 017143            1 MAANDTVKYGIIGM-GMMGREHFINLHHLRSQGVS---VVCIADPHLQSRQQALKLANAFDWPLKVFP--GHQELLDSGL   74 (376)
Q Consensus         1 m~~~~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~---~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~   74 (376)
                      |+. +.+||||||+ |..|...+..|..+  ++++   |..+.+....-  +.-.+.   +.+ ..+.  +.+++ .  +
T Consensus         1 ~~~-~~~~VaIvGATG~vG~ell~lL~~h--~~f~v~~l~~~aS~~saG--k~~~~~---~~~-l~v~~~~~~~~-~--~   68 (347)
T PRK06728          1 MSE-KGYHVAVVGATGAVGQKIIELLEKE--TKFNIAEVTLLSSKRSAG--KTVQFK---GRE-IIIQEAKINSF-E--G   68 (347)
T ss_pred             CCC-CCCEEEEEeCCCHHHHHHHHHHHHC--CCCCcccEEEEECcccCC--CCeeeC---Ccc-eEEEeCCHHHh-c--C
Confidence            544 3589999995 88999999999877  7888   66665542210  111111   111 1222  33333 3  4


Q ss_pred             CCEEEEeCCCCccHHHHHHHHcCCCCCeEEE-------ec--CCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHH
Q 017143           75 CDVVVVSTPNMTHYQILMDIINHPKPHHVLV-------EK--PLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAK  145 (376)
Q Consensus        75 ~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~-------EK--P~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~  145 (376)
                      +|+|+.++|+....+++.++.+  +|..|+=       |.  |+....--...|.+    ..+  +..+.++--......
T Consensus        69 ~Divf~a~~~~~s~~~~~~~~~--~G~~VID~Ss~fR~~~~vplvvPEvN~e~i~~----~~~--iIanPnC~tt~~~la  140 (347)
T PRK06728         69 VDIAFFSAGGEVSRQFVNQAVS--SGAIVIDNTSEYRMAHDVPLVVPEVNAHTLKE----HKG--IIAVPNCSALQMVTA  140 (347)
T ss_pred             CCEEEECCChHHHHHHHHHHHH--CCCEEEECchhhcCCCCCCeEeCCcCHHHHhc----cCC--EEECCCCHHHHHHHH
Confidence            9999999999999999999999  7765542       21  22221111112221    124  455555555667778


Q ss_pred             HHHHHHcCCCCceEE
Q 017143          146 LIQIVKSGSIGQVKM  160 (376)
Q Consensus       146 ~k~~i~~g~iG~i~~  160 (376)
                      ++-+.+.+.|-+|..
T Consensus       141 L~PL~~~~~i~~v~V  155 (347)
T PRK06728        141 LQPIRKVFGLERIIV  155 (347)
T ss_pred             HHHHHHcCCccEEEE
Confidence            888888877755433

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=96.68  E-value=0.011  Score=55.09  Aligned_cols=99  Identities=16%  Similarity=0.149  Sum_probs=61.0

Q ss_pred             eEEEEeCChhhHHHHHHhhhhc--CC---CcEEEEEeCCChh--hHHHHHHHHHh-----c--CC--C--CCccCCHHHH
Q 017143            8 KYGIIGMGMMGREHFINLHHLR--SQ---GVSVVCIADPHLQ--SRQQALKLANA-----F--DW--P--LKVFPGHQEL   69 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~--~~---~~~~~~v~d~~~~--~~~~~~~~~~~-----~--~~--~--~~~~~~~~~~   69 (376)
                      ||+|||+|.||......+....  .+   +.+|. +|.+++.  ..+..+.+.+.     |  ++  |  ++.++|++++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~-lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ea   79 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVR-MWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA   79 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEE-EEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHH
Confidence            6899999999998777776541  00   14533 5666320  00123333221     1  32  2  2356889999


Q ss_pred             hhCCCCCEEEEeCCCCccHHHHHHH---HcCCCCC-eEEEecCCCC
Q 017143           70 LDSGLCDVVVVSTPNMTHYQILMDI---INHPKPH-HVLVEKPLCT  111 (376)
Q Consensus        70 l~~~~~D~V~i~t~~~~h~~~~~~a---l~~~~g~-~Vl~EKP~a~  111 (376)
                      +++  .|+|++++|++.+.+++.+.   ++  .++ -|.|-|=+..
T Consensus        80 l~~--ADiIIlAVPs~~i~~vl~~l~~~l~--~~~~iVs~tKGie~  121 (342)
T TIGR03376        80 AKG--ADILVFVIPHQFLEGICKQLKGHVK--PNARAISCIKGLEV  121 (342)
T ss_pred             Hhc--CCEEEEECChHHHHHHHHHHHhhcC--CCCEEEEEeCCccc
Confidence            976  79999999999998887764   44  343 3555665543

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK04148 hypothetical protein; Provisional

Probab=96.66  E-value=0.013  Score=46.34  Aligned_cols=94  Identities=19%  Similarity=0.176  Sum_probs=63.2

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC---CCccCCHHHHhhCCCCCEEEEeC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP---LKVFPGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~D~V~i~t   82 (376)
                      ..|+..||+| .|......|.+.   +.+|++ .|.++...+.+++    .++.   ...|+.--++.+.  .|+|+-.-
T Consensus        17 ~~kileIG~G-fG~~vA~~L~~~---G~~Via-IDi~~~aV~~a~~----~~~~~v~dDlf~p~~~~y~~--a~liysir   85 (134)
T PRK04148         17 NKKIVELGIG-FYFKVAKKLKES---GFDVIV-IDINEKAVEKAKK----LGLNAFVDDLFNPNLEIYKN--AKLIYSIR   85 (134)
T ss_pred             CCEEEEEEec-CCHHHHHHHHHC---CCEEEE-EECCHHHHHHHHH----hCCeEEECcCCCCCHHHHhc--CCEEEEeC
Confidence            4789999999 777777777764   889887 5999985444433    3433   1445545566665  89999888


Q ss_pred             CCC-ccHHHHHHHHcCCCCCeEEEecCCCCCH
Q 017143           83 PNM-THYQILMDIINHPKPHHVLVEKPLCTTV  113 (376)
Q Consensus        83 ~~~-~h~~~~~~al~~~~g~~Vl~EKP~a~~~  113 (376)
                      ||. .|..++.-|-+  -|-. ++=||++-+.
T Consensus        86 pp~el~~~~~~la~~--~~~~-~~i~~l~~e~  114 (134)
T PRK04148         86 PPRDLQPFILELAKK--INVP-LIIKPLSGEE  114 (134)
T ss_pred             CCHHHHHHHHHHHHH--cCCC-EEEEcCCCCC
Confidence            874 66666666666  4444 4457776543

>PLN00203 glutamyl-tRNA reductase

Probab=96.65  E-value=0.0044  Score=60.81  Aligned_cols=82  Identities=18%  Similarity=0.220  Sum_probs=57.5

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcC-CC--CCccCCHHHHhhCCCCCEEEEeC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFD-WP--LKVFPGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~l~~~~~D~V~i~t   82 (376)
                      ..+|+|||+|.+|..++..+...   +++-+.|++++.+   ++++++++++ ..  ...+++..+.+..  .|+|+.||
T Consensus       266 ~kkVlVIGAG~mG~~~a~~L~~~---G~~~V~V~nRs~e---ra~~La~~~~g~~i~~~~~~dl~~al~~--aDVVIsAT  337 (519)
T PLN00203        266 SARVLVIGAGKMGKLLVKHLVSK---GCTKMVVVNRSEE---RVAALREEFPDVEIIYKPLDEMLACAAE--ADVVFTST  337 (519)
T ss_pred             CCEEEEEeCHHHHHHHHHHHHhC---CCCeEEEEeCCHH---HHHHHHHHhCCCceEeecHhhHHHHHhc--CCEEEEcc
Confidence            57899999999999998888765   5654667899887   6777877763 22  1234566666655  89999998


Q ss_pred             CC---CccHHHHHHHH
Q 017143           83 PN---MTHYQILMDII   95 (376)
Q Consensus        83 ~~---~~h~~~~~~al   95 (376)
                      +.   -...+.+..+.
T Consensus       338 ~s~~pvI~~e~l~~~~  353 (519)
T PLN00203        338 SSETPLFLKEHVEALP  353 (519)
T ss_pred             CCCCCeeCHHHHHHhh
Confidence            63   23455555554

>PRK08605 D-lactate dehydrogenase; Validated

Probab=96.64  E-value=0.011  Score=55.05  Aligned_cols=69  Identities=23%  Similarity=0.284  Sum_probs=49.3

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      -.+|||||+|.||+.....+++.  -+.+|.+ +|++....  .   . . .+  ...+++++++++  .|+|++++|..
T Consensus       146 g~~VgIIG~G~IG~~vA~~L~~~--~g~~V~~-~d~~~~~~--~---~-~-~~--~~~~~l~ell~~--aDvIvl~lP~t  211 (332)
T PRK08605        146 DLKVAVIGTGRIGLAVAKIFAKG--YGSDVVA-YDPFPNAK--A---A-T-YV--DYKDTIEEAVEG--ADIVTLHMPAT  211 (332)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhc--CCCEEEE-ECCCccHh--H---H-h-hc--cccCCHHHHHHh--CCEEEEeCCCC
Confidence            36899999999999888887432  3778764 78776421  1   1 1 22  245689999987  89999999976


Q ss_pred             ccH
Q 017143           86 THY   88 (376)
Q Consensus        86 ~h~   88 (376)
                      ...
T Consensus       212 ~~t  214 (332)
T PRK08605        212 KYN  214 (332)
T ss_pred             cch
Confidence            543

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=96.60  E-value=0.011  Score=54.38  Aligned_cols=77  Identities=18%  Similarity=0.191  Sum_probs=49.7

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-----------CCccCCHHHHhhCCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-----------LKVFPGHQELLDSGLC   75 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~   75 (376)
                      +||+|||+|.+|......|.+.   +.+|+ ++++ +++   .+++.+ .|+.           ....++.+++..  ++
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~---g~~V~-~~~r-~~~---~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~   69 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEA---GRDVT-FLVR-PKR---AKALRE-RGLVIRSDHGDAVVPGPVITDPEELTG--PF   69 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHC---CCceE-EEec-HHH---HHHHHh-CCeEEEeCCCeEEecceeecCHHHccC--CC
Confidence            4899999999999888888774   56655 4556 543   333332 2321           112445555543  48


Q ss_pred             CEEEEeCCCCccHHHHHHH
Q 017143           76 DVVVVSTPNMTHYQILMDI   94 (376)
Q Consensus        76 D~V~i~t~~~~h~~~~~~a   94 (376)
                      |+|++|++...+.+.+.+.
T Consensus        70 d~vilavk~~~~~~~~~~l   88 (305)
T PRK12921         70 DLVILAVKAYQLDAAIPDL   88 (305)
T ss_pred             CEEEEEecccCHHHHHHHH
Confidence            9999999988776655444

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=96.60  E-value=0.038  Score=49.84  Aligned_cols=125  Identities=21%  Similarity=0.239  Sum_probs=69.2

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCH-HHHhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGH-QELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~D~V~i~t~~   84 (376)
                      +.+|+|+|+|.||......++..   +..+ .|++++...  ...+.+.++|+.-....+. .+.+.  +.|+|++++|-
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~---g~~v-~i~g~d~~~--~~~~~a~~lgv~d~~~~~~~~~~~~--~aD~VivavPi   74 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEA---GLVV-RIIGRDRSA--ATLKAALELGVIDELTVAGLAEAAA--EADLVIVAVPI   74 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHc---CCeE-EEEeecCcH--HHHHHHhhcCcccccccchhhhhcc--cCCEEEEeccH
Confidence            58999999999999999888875   5543 244444432  1222334456531111222 33333  47999999998


Q ss_pred             CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHH
Q 017143           85 MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPP  142 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~  142 (376)
                      ..-.+++.+.... -.+..++==-.+....-...+.+.. .. ++ -+++-..-|.|.
T Consensus        75 ~~~~~~l~~l~~~-l~~g~iv~Dv~S~K~~v~~a~~~~~-~~-~~-~~vg~HPM~G~~  128 (279)
T COG0287          75 EATEEVLKELAPH-LKKGAIVTDVGSVKSSVVEAMEKYL-PG-DV-RFVGGHPMFGPE  128 (279)
T ss_pred             HHHHHHHHHhccc-CCCCCEEEecccccHHHHHHHHHhc-cC-CC-eeEecCCCCCCc
Confidence            7766666654421 1222333233333444444444444 22 33 556666666665

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=96.60  E-value=0.0094  Score=55.31  Aligned_cols=65  Identities=17%  Similarity=0.255  Sum_probs=49.2

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      .+|||||+|.+|+.....+...   +.+|++ +|+++..   ...     ..  ....+++++++.  .|+|++++|...
T Consensus       147 ~~VgIIG~G~IG~~vA~~L~~~---G~~V~~-~d~~~~~---~~~-----~~--~~~~~l~ell~~--aDiVil~lP~t~  210 (330)
T PRK12480        147 MTVAIIGTGRIGAATAKIYAGF---GATITA-YDAYPNK---DLD-----FL--TYKDSVKEAIKD--ADIISLHVPANK  210 (330)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC---CCEEEE-EeCChhH---hhh-----hh--hccCCHHHHHhc--CCEEEEeCCCcH
Confidence            5899999999999988888765   788774 6887652   111     11  244689999987  899999999775


Q ss_pred             c
Q 017143           87 H   87 (376)
Q Consensus        87 h   87 (376)
                      +
T Consensus       211 ~  211 (330)
T PRK12480        211 E  211 (330)
T ss_pred             H
Confidence            3

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.60  E-value=0.024  Score=51.09  Aligned_cols=134  Identities=17%  Similarity=0.225  Sum_probs=80.5

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC--CCccCCHH---HHhhCCCCCEEEEe
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP--LKVFPGHQ---ELLDSGLCDVVVVS   81 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~l~~~~~D~V~i~   81 (376)
                      .+++|+|+|..|...++-.+++   +.++++|...+..+    ++..+.+|-+  +..+.+-+   ++...  .|.++.+
T Consensus       183 ~~vgI~GlGGLGh~aVq~AKAM---G~rV~vis~~~~kk----eea~~~LGAd~fv~~~~d~d~~~~~~~~--~dg~~~~  253 (360)
T KOG0023|consen  183 KWVGIVGLGGLGHMAVQYAKAM---GMRVTVISTSSKKK----EEAIKSLGADVFVDSTEDPDIMKAIMKT--TDGGIDT  253 (360)
T ss_pred             cEEEEecCcccchHHHHHHHHh---CcEEEEEeCCchhH----HHHHHhcCcceeEEecCCHHHHHHHHHh--hcCccee
Confidence            6899999999888777766777   89999765443332    2333344544  11232332   22222  5665555


Q ss_pred             CC--CCccHHHHHHHHcCCCCCeEEE---ecCCCC------------------CHHHHHHHHHHHHhCCCeEEEEeeccc
Q 017143           82 TP--NMTHYQILMDIINHPKPHHVLV---EKPLCT------------------TVADCKKVVDAARKRPDILVQVGLEYR  138 (376)
Q Consensus        82 t~--~~~h~~~~~~al~~~~g~~Vl~---EKP~a~------------------~~~e~~~l~~~a~~~~~~~~~v~~~~r  138 (376)
                      ++  ..--.+.+...++. +|+-|++   |+|+-.                  +..|.+|+++.+ .++++...+-...-
T Consensus       254 v~~~a~~~~~~~~~~lk~-~Gt~V~vg~p~~~~~~~~~~lil~~~~I~GS~vG~~ket~E~Ldf~-a~~~ik~~IE~v~~  331 (360)
T KOG0023|consen  254 VSNLAEHALEPLLGLLKV-NGTLVLVGLPEKPLKLDTFPLILGRKSIKGSIVGSRKETQEALDFV-ARGLIKSPIELVKL  331 (360)
T ss_pred             eeeccccchHHHHHHhhc-CCEEEEEeCcCCcccccchhhhcccEEEEeeccccHHHHHHHHHHH-HcCCCcCceEEEeh
Confidence            55  33346677778876 5888887   555443                  458999999999 55576655443221


Q ss_pred             cCHHHHHHHHHHHcC
Q 017143          139 YMPPVAKLIQIVKSG  153 (376)
Q Consensus       139 ~~p~~~~~k~~i~~g  153 (376)
                       + .+..+-+.+++|
T Consensus       332 -~-~v~~a~erm~kg  344 (360)
T KOG0023|consen  332 -S-EVNEAYERMEKG  344 (360)
T ss_pred             -h-HHHHHHHHHHhc
Confidence             1 244455555543

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=96.59  E-value=0.011  Score=55.81  Aligned_cols=100  Identities=19%  Similarity=0.236  Sum_probs=65.6

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH---hcC-CC--CC---------------cc-
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN---AFD-WP--LK---------------VF-   63 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~---~~~-~~--~~---------------~~-   63 (376)
                      |+||||.|.|+||+..++.+...  .++++++|-|+..+.. ...-+-+   -+| ++  +.               ++ 
T Consensus        85 ~~kvgInGFGRIGR~v~R~~~~~--~~i~vvaINdp~~~~~-~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~  161 (421)
T PLN02272         85 KTKIGINGFGRIGRLVLRIATSR--DDIEVVAVNDPFIDAK-YMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTS  161 (421)
T ss_pred             ceEEEEECcCHHHHHHHHHHhhc--CCcEEEEecCCCCCHH-HHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEe
Confidence            47999999999999888776543  6899999998643321 2222211   111 11  11               11 


Q ss_pred             -CCHHHHhhC-CCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCC
Q 017143           64 -PGHQELLDS-GLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPL  109 (376)
Q Consensus        64 -~~~~~~l~~-~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~  109 (376)
                       .+.+++-.. .++|+|+-||......+.+..++++|+ |-|++..|.
T Consensus       162 ~~dp~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGA-kkVVIdap~  208 (421)
T PLN02272        162 KRDPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGA-KKVVISAPS  208 (421)
T ss_pred             cCCcccCcccccCCCEEEEcCchhccHHHHHHHhhCCC-CEEEECCCC
Confidence             123333221 269999999999999999999999542 679999883

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.58  E-value=0.017  Score=48.40  Aligned_cols=33  Identities=30%  Similarity=0.420  Sum_probs=27.5

Q ss_pred             eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh
Q 017143            8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL   43 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~   43 (376)
                      ||+|||+|.+|...+..+...   ++.-+.++|.|.
T Consensus         1 ~VlViG~GglGs~ia~~La~~---Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARS---GVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHc---CCCeEEEEeCCE
Confidence            689999999999998888875   666566888876

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.55  E-value=0.013  Score=53.08  Aligned_cols=134  Identities=15%  Similarity=0.135  Sum_probs=74.7

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC--CCccCCHHHHhhC-CCCCEEEEeC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP--LKVFPGHQELLDS-GLCDVVVVST   82 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~-~~~D~V~i~t   82 (376)
                      ..++.|||+|..|+..+..+...   +++-+.|++|+.+   ++++++++++..  +..+...+++... .+.|+||-||
T Consensus       125 ~k~vlvlGaGGaarai~~aL~~~---G~~~i~I~nRt~~---ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaT  198 (282)
T TIGR01809       125 GFRGLVIGAGGTSRAAVYALASL---GVTDITVINRNPD---KLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTV  198 (282)
T ss_pred             CceEEEEcCcHHHHHHHHHHHHc---CCCeEEEEeCCHH---HHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECC
Confidence            35899999999999988888876   6666678899987   677777765421  1122322332111 3489999999


Q ss_pred             CCCccHHHHH-H-H----H-cCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHH
Q 017143           83 PNMTHYQILM-D-I----I-NHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQI  149 (376)
Q Consensus        83 ~~~~h~~~~~-~-a----l-~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~  149 (376)
                      |-....+... . .    + ..-....++.+  +.-++.+ -.|.+.|++ .|..+.-|.......+....+-+
T Consensus       199 p~g~~~~~~~l~~~~~~~~~~~~~~~~~v~D--~vY~P~~-T~ll~~A~~-~G~~~~~Gl~MLv~Qa~~~f~lw  268 (282)
T TIGR01809       199 PADVPADYVDLFATVPFLLLKRKSSEGIFLD--AAYDPWP-TPLVAIVSA-AGWRVISGLQMLLHQGFAQFEQW  268 (282)
T ss_pred             CCCCCCCHHHhhhhhhhhccccCCCCcEEEE--EeeCCCC-CHHHHHHHH-CCCEEECcHHHHHHHHHHHHHHH
Confidence            9654322111 0 0    0 00001223322  1111222 235566634 36777777666665555544443

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.54  E-value=0.0082  Score=50.56  Aligned_cols=101  Identities=18%  Similarity=0.257  Sum_probs=56.4

Q ss_pred             eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh--------cCCC----------CCccCCHHHH
Q 017143            8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA--------FDWP----------LKVFPGHQEL   69 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~--------~~~~----------~~~~~~~~~~   69 (376)
                      ||+|||+|.+|......++..   +++|+ ++|++++.++++.+..++        ..+.          +...+|++++
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~---G~~V~-l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~   76 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARA---GYEVT-LYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEA   76 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHT---TSEEE-EE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGG
T ss_pred             CEEEEcCCHHHHHHHHHHHhC---CCcEE-EEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHH
Confidence            699999999999887777775   88866 789999876554332221        1110          2356777777


Q ss_pred             hhCCCCCEEEEeCCCCccHHHHH-HHHc-CCCCCeEEEecCCCCCHHH
Q 017143           70 LDSGLCDVVVVSTPNMTHYQILM-DIIN-HPKPHHVLVEKPLCTTVAD  115 (376)
Q Consensus        70 l~~~~~D~V~i~t~~~~h~~~~~-~al~-~~~g~~Vl~EKP~a~~~~e  115 (376)
                      . +  .|+|+=+.|......... +-|+ .....-|++----+.++.+
T Consensus        77 ~-~--adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~  121 (180)
T PF02737_consen   77 V-D--ADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISE  121 (180)
T ss_dssp             C-T--ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHH
T ss_pred             h-h--hheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHH
Confidence            6 3  788888888765533322 2222 1112335554444555554

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=96.53  E-value=0.012  Score=49.32  Aligned_cols=76  Identities=18%  Similarity=0.116  Sum_probs=49.5

Q ss_pred             eEEEEeCChhh--HHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH----hcCCC--CCccCCHHHHhhCCCCCEEE
Q 017143            8 KYGIIGMGMMG--REHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN----AFDWP--LKVFPGHQELLDSGLCDVVV   79 (376)
Q Consensus         8 ~v~iiG~G~~g--~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~l~~~~~D~V~   79 (376)
                      ||+|||.|+.-  ......+.....-...-+.++|+|+++++...++++    +.+.+  +..++|.+++|+.  .|.|+
T Consensus         1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~g--ADfVi   78 (183)
T PF02056_consen    1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEG--ADFVI   78 (183)
T ss_dssp             EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTT--ESEEE
T ss_pred             CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCC--CCEEE
Confidence            79999999853  333333433322233346689999999876655554    55666  3568999999986  89999


Q ss_pred             EeCCCC
Q 017143           80 VSTPNM   85 (376)
Q Consensus        80 i~t~~~   85 (376)
                      ......
T Consensus        79 ~~irvG   84 (183)
T PF02056_consen   79 NQIRVG   84 (183)
T ss_dssp             E---TT
T ss_pred             EEeeec
Confidence            988765

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

Probab=96.51  E-value=0.015  Score=56.60  Aligned_cols=90  Identities=21%  Similarity=0.243  Sum_probs=62.1

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCC---HHHHhhCCCCCEEEEeC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPG---HQELLDSGLCDVVVVST   82 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~D~V~i~t   82 (376)
                      .-|+.|||.|..|...+..+.+....+++++|++|.++..   .   ..-.|+|  ++.+   +.+++.+.++|-|+|+.
T Consensus       125 ~~rvLIvGag~~a~~l~~~L~~~~~~g~~vvG~idd~~~~---~---~~i~g~p--Vlg~~~~l~~~i~~~~id~ViIa~  196 (445)
T TIGR03025       125 LRRVLIVGTGEAARELAAALSRNPDLGYRVVGFVDDRPSD---R---VEVAGLP--VLGKLDDLVELVRAHRVDEVIIAL  196 (445)
T ss_pred             CCcEEEEECCHHHHHHHHHHhhCccCCeEEEEEEeCCccc---c---cccCCCc--ccCCHHHHHHHHHhCCCCEEEEec
Confidence            4689999999999988888877644689999999876542   1   1224665  5544   55666677899999998


Q ss_pred             CCCccH---HHHHHHHcCCCCCeEEE
Q 017143           83 PNMTHY---QILMDIINHPKPHHVLV  105 (376)
Q Consensus        83 ~~~~h~---~~~~~al~~~~g~~Vl~  105 (376)
                      |...+.   +++..|-+  .|..|.+
T Consensus       197 p~~~~~~~~~ll~~~~~--~gv~V~~  220 (445)
T TIGR03025       197 PLSEEARILELLLQLRD--LGVDVRL  220 (445)
T ss_pred             CcccHHHHHHHHHHHHh--cCCEEEE
Confidence            876543   33444545  5565554

Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.49  E-value=0.0063  Score=56.64  Aligned_cols=137  Identities=10%  Similarity=0.081  Sum_probs=79.6

Q ss_pred             ceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHH-HHhhCCCCCEEEEeCC
Q 017143            6 TVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQ-ELLDSGLCDVVVVSTP   83 (376)
Q Consensus         6 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~D~V~i~t~   83 (376)
                      ++||+|||+ |..|...++.|.+..-|.++++++......    .+.+. -.+.. ..+.+.+ ..+.  ++|+|+.|+|
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~----g~~l~-~~g~~-i~v~d~~~~~~~--~vDvVf~A~g   72 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSA----GKELS-FKGKE-LKVEDLTTFDFS--GVDIALFSAG   72 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccC----CCeee-eCCce-eEEeeCCHHHHc--CCCEEEECCC
Confidence            369999995 889999998888721278899998754322    11111 01222 2223332 2233  5999999999


Q ss_pred             CCccHHHHHHHHcCCCCCeEEEecCCCCCHH----------HHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcC
Q 017143           84 NMTHYQILMDIINHPKPHHVLVEKPLCTTVA----------DCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSG  153 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~----------e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g  153 (376)
                      +....+++.++++  +|. +.++-..+.-.+          --..+.. + .+.+  +..+.++.-......++-+.+.+
T Consensus        73 ~g~s~~~~~~~~~--~G~-~VIDlS~~~R~~~~~p~~lpevn~~~i~~-~-~~~~--iVanp~C~~t~~~l~l~pL~~~~  145 (334)
T PRK14874         73 GSVSKKYAPKAAA--AGA-VVIDNSSAFRMDPDVPLVVPEVNPEALAE-H-RKKG--IIANPNCSTIQMVVALKPLHDAA  145 (334)
T ss_pred             hHHHHHHHHHHHh--CCC-EEEECCchhhcCCCCCeEcCCcCHHHHhh-h-hcCC--eEECccHHHHHHHHHHHHHHHhc
Confidence            9999999999999  777 555332221111          1112222 2 1113  33444444455666677777766


Q ss_pred             CCCc
Q 017143          154 SIGQ  157 (376)
Q Consensus       154 ~iG~  157 (376)
                      .|-+
T Consensus       146 ~i~~  149 (334)
T PRK14874        146 GIKR  149 (334)
T ss_pred             CceE
Confidence            6644

>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=96.46  E-value=0.018  Score=53.18  Aligned_cols=98  Identities=23%  Similarity=0.308  Sum_probs=66.4

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH---hcCC---C--------------CCcc--
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN---AFDW---P--------------LKVF--   63 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~---~~~~---~--------------~~~~--   63 (376)
                      ++||||.|+|.||+..++.+...  ++++++++.|+..+.. ...-+-+   -||-   +              ++++  
T Consensus         2 ~ikigInG~GRiGr~v~r~~~~~--~~~~ivaind~~~~~~-~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~   78 (334)
T PRK08955          2 TIKVGINGFGRIGRLALRAAWDW--PELEFVQINDPAGDAA-TLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQN   78 (334)
T ss_pred             CeEEEEECcCHHHHHHHHHHHhC--CCcEEEEecCCCCCHH-HHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEec
Confidence            48999999999999888887765  7899999998543211 2222211   1110   0              1111  


Q ss_pred             CCHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecC
Q 017143           64 PGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKP  108 (376)
Q Consensus        64 ~~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP  108 (376)
                      .+.+++-.. ++|+|+-||......+.+..++++| -|-|.+--|
T Consensus        79 ~~~~~~~w~-gvDiVle~tG~~~s~~~a~~hl~aG-ak~V~iSap  121 (334)
T PRK08955         79 KAIADTDWS-GCDVVIEASGVMKTKALLQAYLDQG-VKRVVVTAP  121 (334)
T ss_pred             CChhhCCcc-CCCEEEEccchhhcHHHHHHHHHCC-CEEEEECCC
Confidence            244444443 6999999999999999999999954 256766666

>PRK06436 glycerate dehydrogenase; Provisional

Probab=96.44  E-value=0.0094  Score=54.53  Aligned_cols=64  Identities=17%  Similarity=0.349  Sum_probs=48.2

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      -.+|||||+|.||+.....++..   +.++++ +|++...          .+.. ..+.++++++++  .|+|+++.|..
T Consensus       122 gktvgIiG~G~IG~~vA~~l~af---G~~V~~-~~r~~~~----------~~~~-~~~~~l~ell~~--aDiv~~~lp~t  184 (303)
T PRK06436        122 NKSLGILGYGGIGRRVALLAKAF---GMNIYA-YTRSYVN----------DGIS-SIYMEPEDIMKK--SDFVLISLPLT  184 (303)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHC---CCEEEE-ECCCCcc----------cCcc-cccCCHHHHHhh--CCEEEECCCCC
Confidence            46899999999999888776665   888774 6776431          1332 236789999987  89999999965


Q ss_pred             c
Q 017143           86 T   86 (376)
Q Consensus        86 ~   86 (376)
                      .
T Consensus       185 ~  185 (303)
T PRK06436        185 D  185 (303)
T ss_pred             c
Confidence            3

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=96.44  E-value=0.01  Score=55.87  Aligned_cols=62  Identities=27%  Similarity=0.436  Sum_probs=47.2

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      -.+|||||+|.+|+.....+...   +.++.+ ||+...   . .      +.. ..+.++++++++  .|+|++++|-
T Consensus       116 gktvGIIG~G~IG~~vA~~l~a~---G~~V~~-~dp~~~---~-~------~~~-~~~~~L~ell~~--sDiI~lh~PL  177 (378)
T PRK15438        116 DRTVGIVGVGNVGRRLQARLEAL---GIKTLL-CDPPRA---D-R------GDE-GDFRSLDELVQE--ADILTFHTPL  177 (378)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHC---CCEEEE-ECCccc---c-c------ccc-cccCCHHHHHhh--CCEEEEeCCC
Confidence            46899999999999988888876   899875 676432   0 0      111 246789999987  7999999993

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=96.43  E-value=0.07  Score=52.62  Aligned_cols=140  Identities=16%  Similarity=0.213  Sum_probs=82.2

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHH--------HHHhcCC-C----------CCccCCH
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALK--------LANAFDW-P----------LKVFPGH   66 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--------~~~~~~~-~----------~~~~~~~   66 (376)
                      .-||||||+|.||......++..   +++|+ ++|++++.++++.+        +.+ .|. .          +...+++
T Consensus         7 i~~V~VIGaG~MG~gIA~~la~a---G~~V~-l~D~~~e~l~~~~~~i~~~l~~~~~-~G~~~~~~~~~~~~~i~~~~~~   81 (507)
T PRK08268          7 IATVAVIGAGAMGAGIAQVAAQA---GHTVL-LYDARAGAAAAARDGIAARLAKLVE-KGKLTAEQADAALARLRPVEAL   81 (507)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC---CCeEE-EEeCCHHHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHhCeEEeCCH
Confidence            35799999999999988877764   88876 79999997655421        121 121 0          2355777


Q ss_pred             HHHhhCCCCCEEEEeCCCCccHHHHHH-HHcC-CCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeec--------
Q 017143           67 QELLDSGLCDVVVVSTPNMTHYQILMD-IINH-PKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLE--------  136 (376)
Q Consensus        67 ~~~l~~~~~D~V~i~t~~~~h~~~~~~-al~~-~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~--------  136 (376)
                      +++ .  +.|+|+-+.|.........- .++. .....|+.----+.++.   +|...+ .+.+..+-+.|-        
T Consensus        82 ~~~-~--~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~---~la~~~-~~p~r~~G~hff~Pa~v~~L  154 (507)
T PRK08268         82 ADL-A--DCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT---AIAAAL-KHPERVAGLHFFNPVPLMKL  154 (507)
T ss_pred             HHh-C--CCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---HHHhhc-CCcccEEEEeecCCcccCee
Confidence            663 4  48999999999877655431 1220 02334554333455665   455555 332321111111        


Q ss_pred             -------cccCHHHHHHHHHHHcCCCCceE
Q 017143          137 -------YRYMPPVAKLIQIVKSGSIGQVK  159 (376)
Q Consensus       137 -------~r~~p~~~~~k~~i~~g~iG~i~  159 (376)
                             .--...+.+++.+++  .+|+.-
T Consensus       155 vEvv~g~~Ts~~~~~~~~~l~~--~lgk~p  182 (507)
T PRK08268        155 VEVVSGLATDPAVADALYALAR--AWGKTP  182 (507)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHH--HcCCce
Confidence                   112346677777776  477554

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=96.43  E-value=0.014  Score=52.43  Aligned_cols=119  Identities=19%  Similarity=0.196  Sum_probs=75.2

Q ss_pred             eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCcc
Q 017143            8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMTH   87 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~h   87 (376)
                      ++.|+|+|..++..+.++...   ++.-+.|++|+++   ++++++++++++  . .  ++ +.....|+||-|||-..+
T Consensus       124 ~vlilGaGGaarAi~~aL~~~---g~~~i~i~nR~~~---~a~~la~~~~~~--~-~--~~-~~~~~~dlvINaTp~Gm~  191 (272)
T PRK12550        124 VVALRGSGGMAKAVAAALRDA---GFTDGTIVARNEK---TGKALAELYGYE--W-R--PD-LGGIEADILVNVTPIGMA  191 (272)
T ss_pred             eEEEECCcHHHHHHHHHHHHC---CCCEEEEEeCCHH---HHHHHHHHhCCc--c-h--hh-cccccCCEEEECCccccC
Confidence            899999999999988888876   6655668999987   677888776543  1 1  12 222348999999996654


Q ss_pred             H-------HHHHHHHcCCCCCeEEEe---cCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHH
Q 017143           88 Y-------QILMDIINHPKPHHVLVE---KPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQ  148 (376)
Q Consensus        88 ~-------~~~~~al~~~~g~~Vl~E---KP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~  148 (376)
                      .       .+-...+.  .+ .+.++   +|.-      -.|.+.|+++ |..+.-|............+-
T Consensus       192 ~~~~~~~~pi~~~~l~--~~-~~v~D~vY~P~~------T~ll~~A~~~-G~~~i~Gl~MLi~Qa~~~f~l  252 (272)
T PRK12550        192 GGPEADKLAFPEAEID--AA-SVVFDVVALPAE------TPLIRYARAR-GKTVITGAEVIALQAVEQFVL  252 (272)
T ss_pred             CCCccccCCCCHHHcC--CC-CEEEEeecCCcc------CHHHHHHHHC-cCeEeCCHHHHHHHHHHHHHH
Confidence            2       12223344  33 33333   3431      2366666444 778777776665554444443

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=96.42  E-value=0.034  Score=53.54  Aligned_cols=83  Identities=19%  Similarity=0.208  Sum_probs=55.0

Q ss_pred             eeEEEEeCChhhHH--HHHHhhhh-cCCCcEEEEEeCCChhhHHHHHHHHH----hcCCC--CCccCCHHHHhhCCCCCE
Q 017143            7 VKYGIIGMGMMGRE--HFINLHHL-RSQGVSVVCIADPHLQSRQQALKLAN----AFDWP--LKVFPGHQELLDSGLCDV   77 (376)
Q Consensus         7 ~~v~iiG~G~~g~~--~~~~~~~~-~~~~~~~~~v~d~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~l~~~~~D~   77 (376)
                      +||+|||+|.+|..  ++..+... .-.+.+|+ ++|+++++++......+    ..+.+  +..++|+++.+++  .|+
T Consensus         1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~-L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~--AD~   77 (423)
T cd05297           1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIA-LMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDG--ADF   77 (423)
T ss_pred             CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEE-EECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcC--CCE
Confidence            58999999998874  33234321 11455654 78999987655443332    23332  3457888999986  899


Q ss_pred             EEEeCCCCccHHHHH
Q 017143           78 VVVSTPNMTHYQILM   92 (376)
Q Consensus        78 V~i~t~~~~h~~~~~   92 (376)
                      |+++.+...+.....
T Consensus        78 Vi~ai~~~~~~~~~~   92 (423)
T cd05297          78 VINTIQVGGHEYTET   92 (423)
T ss_pred             EEEeeEecCccchhh
Confidence            999999876655554

linked to 3D####ucture

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=96.40  E-value=0.013  Score=54.10  Aligned_cols=76  Identities=18%  Similarity=0.098  Sum_probs=49.3

Q ss_pred             CCCCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHH--H---HhcCCC--CCccCCHHHHhhCC
Q 017143            1 MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKL--A---NAFDWP--LKVFPGHQELLDSG   73 (376)
Q Consensus         1 m~~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~--~---~~~~~~--~~~~~~~~~~l~~~   73 (376)
                      |++-++.||+|||+|.+|......++..  .-.+ +.++|++++.. +++.+  .   ..++..  +..++|+++ +++ 
T Consensus         1 ~~~~~~~KI~IIGaG~vG~~ia~~la~~--gl~~-i~LvDi~~~~~-~~~~ld~~~~~~~~~~~~~I~~~~d~~~-l~~-   74 (321)
T PTZ00082          1 MTMIKRRKISLIGSGNIGGVMAYLIVLK--NLGD-VVLFDIVKNIP-QGKALDISHSNVIAGSNSKVIGTNNYED-IAG-   74 (321)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHhC--CCCe-EEEEeCCCchh-hHHHHHHHhhhhccCCCeEEEECCCHHH-hCC-
Confidence            7777788999999999998766655553  2246 77899998743 22222  1   112322  344578864 444 


Q ss_pred             CCCEEEEeCC
Q 017143           74 LCDVVVVSTP   83 (376)
Q Consensus        74 ~~D~V~i~t~   83 (376)
                       .|+|+++..
T Consensus        75 -aDiVI~tag   83 (321)
T PTZ00082         75 -SDVVIVTAG   83 (321)
T ss_pred             -CCEEEECCC
Confidence             899999763

>KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism]

Probab=96.39  E-value=0.023  Score=52.42  Aligned_cols=152  Identities=14%  Similarity=0.082  Sum_probs=104.0

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC---CccCCHHHHhhC-CCCCEEEEe
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL---KVFPGHQELLDS-GLCDVVVVS   81 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~-~~~D~V~i~   81 (376)
                      +-+|.++|.|++.+..+.-+.+.  .+++|+.. ++...   .+++++...++..   .+.+.-..|... ...|+|+--
T Consensus         2 ~~~vlllgsg~v~~p~~d~ls~~--~dv~vtva-~~~~~---~~~~~~~~~~~~av~ldv~~~~~~L~~~v~~~D~viSL   75 (445)
T KOG0172|consen    2 KKGVLLLGSGFVSRPVADFLSRK--KDVNVTVA-SRTLK---DAEALVKGINIKAVSLDVADEELALRKEVKPLDLVISL   75 (445)
T ss_pred             CcceEEecCccccchHHHHHhhc--CCceEEEe-hhhHH---HHHHHhcCCCccceEEEccchHHHHHhhhcccceeeee
Confidence            46899999999999888878777  88998854 44443   6888888766551   222221122221 238999999


Q ss_pred             CCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHH----HcCCCCc
Q 017143           82 TPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIV----KSGSIGQ  157 (376)
Q Consensus        82 t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i----~~g~iG~  157 (376)
                      +|...|.-+++.|+.  ..+|+---   +-.-.|.++|-+.+ ...|..++- ..- +.|....+-++=    ....+|+
T Consensus        76 lP~t~h~lVaK~~i~--~~~~~vts---Syv~pe~~~L~~~~-v~AG~ti~~-e~g-ldpGidhm~a~~ti~~vh~hgg~  147 (445)
T KOG0172|consen   76 LPYTFHPLVAKGCII--TKEDSVTS---SYVDPELEELEKAA-VPAGSTIMN-EIG-LDPGIDHMPAMKTIDLVHEHGGK  147 (445)
T ss_pred             ccchhhHHHHHHHHH--hhcccccc---cccCHHHHhhhhhc-cCCCceEec-ccc-cCcchhhhhhhccchHHHhhcce
Confidence            999999999999999  77776432   22446788888888 666866554 333 888877765432    1235789


Q ss_pred             eEEEEEeeccCCcc
Q 017143          158 VKMVAIREHRFPFL  171 (376)
Q Consensus       158 i~~~~~~~~~~~~~  171 (376)
                      +.++..++.+.+.+
T Consensus       148 i~sf~sycGglpap  161 (445)
T KOG0172|consen  148 IKSFKSYCGGLPAP  161 (445)
T ss_pred             eeehhhhcCCccCh
Confidence            98888766655543

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=96.38  E-value=0.008  Score=57.02  Aligned_cols=75  Identities=23%  Similarity=0.336  Sum_probs=51.6

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEe-----CCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEE
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIA-----DPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~-----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      ..+|+|||+|.+|+.|...++.   .+++++.-.     |.+...    .+.+.+-|++  + .++++++..  .|+|++
T Consensus        36 gKtIaIIGyGSqG~AqAlNLrd---SGvnVvvglr~~~id~~~~s----~~kA~~dGF~--v-~~~~Ea~~~--ADvVvi  103 (487)
T PRK05225         36 GKKIVIVGCGAQGLNQGLNMRD---SGLDISYALRKEAIAEKRAS----WRKATENGFK--V-GTYEELIPQ--ADLVIN  103 (487)
T ss_pred             CCEEEEEccCHHHHHHhCCCcc---ccceeEEeccccccccccch----HHHHHhcCCc--c-CCHHHHHHh--CCEEEE
Confidence            4689999999999987766555   488877222     222222    2223334765  3 679999877  899999


Q ss_pred             eCCCCccHHHHH
Q 017143           81 STPNMTHYQILM   92 (376)
Q Consensus        81 ~t~~~~h~~~~~   92 (376)
                      .+|...|..+-.
T Consensus       104 LlPDt~q~~v~~  115 (487)
T PRK05225        104 LTPDKQHSDVVR  115 (487)
T ss_pred             cCChHHHHHHHH
Confidence            999987766543

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=96.35  E-value=0.011  Score=54.57  Aligned_cols=66  Identities=24%  Similarity=0.400  Sum_probs=48.7

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      -.++||||+|.||+...+.++..   +.+|. .+++.+.+  ..   .++.+.   .|-++++++++  .|+|++.+|-.
T Consensus       146 gktvGIiG~GrIG~avA~r~~~F---gm~v~-y~~~~~~~--~~---~~~~~~---~y~~l~ell~~--sDii~l~~Plt  211 (324)
T COG1052         146 GKTLGIIGLGRIGQAVARRLKGF---GMKVL-YYDRSPNP--EA---EKELGA---RYVDLDELLAE--SDIISLHCPLT  211 (324)
T ss_pred             CCEEEEECCCHHHHHHHHHHhcC---CCEEE-EECCCCCh--HH---HhhcCc---eeccHHHHHHh--CCEEEEeCCCC
Confidence            36899999999999988888754   88876 47887641  11   223333   34449999998  79999999954

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.35  E-value=0.029  Score=54.57  Aligned_cols=92  Identities=22%  Similarity=0.203  Sum_probs=60.7

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh-hhHHH-HHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL-QSRQQ-ALKLANAFDWPLKVFPGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t   82 (376)
                      +..++.|+|.|.+|......|++.   +.+|+ ++|++. +..+. .+++ .+.|+.+...+..++.+.  ++|+|++++
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~---G~~V~-~~d~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~--~~d~vv~~~   76 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKL---GAKVI-LTDEKEEDQLKEALEEL-GELGIELVLGEYPEEFLE--GVDLVVVSP   76 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC---CCEEE-EEeCCchHHHHHHHHHH-HhcCCEEEeCCcchhHhh--cCCEEEECC
Confidence            457899999999999877778775   78876 567664 22211 1222 344654111122334443  389999998


Q ss_pred             CCCccHHHHHHHHcCCCCCeEEE
Q 017143           83 PNMTHYQILMDIINHPKPHHVLV  105 (376)
Q Consensus        83 ~~~~h~~~~~~al~~~~g~~Vl~  105 (376)
                      ......+.+.+|.+  .|++|+-
T Consensus        77 g~~~~~~~~~~a~~--~~i~~~~   97 (450)
T PRK14106         77 GVPLDSPPVVQAHK--KGIEVIG   97 (450)
T ss_pred             CCCCCCHHHHHHHH--CCCcEEe
Confidence            87666778888888  8888875

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.35  E-value=0.034  Score=52.03  Aligned_cols=139  Identities=12%  Similarity=0.104  Sum_probs=84.9

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhcCCCcE---EEEEeCCChhhHHHHHHHHHhc-CCCCCccC--CHHHHhhCCCCCEEE
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLRSQGVS---VVCIADPHLQSRQQALKLANAF-DWPLKVFP--GHQELLDSGLCDVVV   79 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~---~~~v~d~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~l~~~~~D~V~   79 (376)
                      ++|||||+ |..|...+..+.++  +++.   ++.+.+...     .++. ..+ |.....++  +.++ +.  ++|+|+
T Consensus         2 ~~VAIVGATG~vG~ell~llL~~--~~f~~~~l~~~ss~~s-----g~~~-~~f~g~~~~v~~~~~~~~-~~--~~Divf   70 (369)
T PRK06598          2 KKVGFVGWRGMVGSVLMQRMVEE--NDFDLIEPVFFSTSQA-----GGAA-PSFGGKEGTLQDAFDIDA-LK--KLDIII   70 (369)
T ss_pred             eEEEEEeCCCHHHHHHHHHHHhC--CCCCcCcEEEecchhh-----CCcc-cccCCCcceEEecCChhH-hc--CCCEEE
Confidence            79999995 88999998866666  6777   776443211     1121 111 11112333  2233 33  499999


Q ss_pred             EeCCCCccHHHHHHHHcCCCCCe-EEEec----------CCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHH
Q 017143           80 VSTPNMTHYQILMDIINHPKPHH-VLVEK----------PLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQ  148 (376)
Q Consensus        80 i~t~~~~h~~~~~~al~~~~g~~-Vl~EK----------P~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~  148 (376)
                      .|+|+....+++.++.+  +|.. +.++-          |+....--...|.. . .+.|..+..+.++.-......++-
T Consensus        71 ~a~~~~~s~~~~~~~~~--aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~-~-~~~g~~iIanPnC~tt~~~laL~P  146 (369)
T PRK06598         71 TCQGGDYTNEVYPKLRA--AGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDD-A-LANGVKTFVGGNCTVSLMLMALGG  146 (369)
T ss_pred             ECCCHHHHHHHHHHHHh--CCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHh-h-hhcCCCEEEcCChHHHHHHHHHHH
Confidence            99999999999999999  7763 55543          33332222223433 2 223644555767766777788888


Q ss_pred             HHHcCCCCceEE
Q 017143          149 IVKSGSIGQVKM  160 (376)
Q Consensus       149 ~i~~g~iG~i~~  160 (376)
                      +.+.+.|-+|..
T Consensus       147 L~~~~~i~~viV  158 (369)
T PRK06598        147 LFKNDLVEWVSV  158 (369)
T ss_pred             HHhcCCceEEEE
Confidence            888766655433

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=96.33  E-value=0.07  Score=49.48  Aligned_cols=109  Identities=11%  Similarity=0.170  Sum_probs=66.5

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcC-C-CCCccCCHHHHhhC-CCCCEEEEe
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFD-W-PLKVFPGHQELLDS-GLCDVVVVS   81 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~l~~-~~~D~V~i~   81 (376)
                      ++.-||+||++-||+..+.++...   ++. |+|+.|+.+   +..++.++.+ - .+.-+.|++|+.+. ..|.-|++.
T Consensus         2 ~~~~iGviGLaVMG~NLaLNi~~~---G~~-VavyNRt~~---ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lM   74 (473)
T COG0362           2 MKADIGVIGLAVMGSNLALNIADH---GYT-VAVYNRTTE---KTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLM   74 (473)
T ss_pred             CccceeeEehhhhhHHHHHHHHhc---Cce-EEEEeCCHH---HHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEE
Confidence            357899999999999998888775   888 558999998   5666665543 1 13456678888764 234444433


Q ss_pred             CCC----CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHH
Q 017143           82 TPN----MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAA  123 (376)
Q Consensus        82 t~~----~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a  123 (376)
                      .-.    +.-.+..+..|+  .| .|+++--=+.-.+-.++..++.
T Consensus        75 VkAG~~VD~~I~~L~p~Le--~g-DIiIDGGNs~y~DT~RR~~eL~  117 (473)
T COG0362          75 VKAGTPVDAVIEQLLPLLE--KG-DIIIDGGNSHYKDTIRRNKELS  117 (473)
T ss_pred             EecCCcHHHHHHHHHhhcC--CC-CEEEeCCCcCCchHHHHHHHHH
Confidence            221    333333344455  33 5666655554445555555555

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=96.33  E-value=0.038  Score=49.85  Aligned_cols=124  Identities=19%  Similarity=0.170  Sum_probs=77.2

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCC--CCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDW--PLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      -++.|+|+|.+|+..+..+...   +.+++ +++++++   ++++++++++-  .... .++++... .+.|+|+.+||.
T Consensus       118 k~vliiGaGg~g~aia~~L~~~---g~~v~-v~~R~~~---~~~~la~~~~~~~~~~~-~~~~~~~~-~~~DivInatp~  188 (270)
T TIGR00507       118 QRVLIIGAGGAARAVALPLLKA---DCNVI-IANRTVS---KAEELAERFQRYGEIQA-FSMDELPL-HRVDLIINATSA  188 (270)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHC---CCEEE-EEeCCHH---HHHHHHHHHhhcCceEE-echhhhcc-cCccEEEECCCC
Confidence            4799999999999998888875   56654 7889887   45555554321  0112 23444322 358999999997


Q ss_pred             CccHH-----HHHHHHcCCCCCeEEEe---cCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHH
Q 017143           85 MTHYQ-----ILMDIINHPKPHHVLVE---KPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQI  149 (376)
Q Consensus        85 ~~h~~-----~~~~al~~~~g~~Vl~E---KP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~  149 (376)
                      ..+..     +....++  .++ ++++   +|..+      .|.+.|++ .|..+.-|............+-+
T Consensus       189 gm~~~~~~~~~~~~~l~--~~~-~v~D~~y~p~~T------~ll~~A~~-~G~~~vdG~~Ml~~Qa~~~f~~w  251 (270)
T TIGR00507       189 GMSGNIDEPPVPAEKLK--EGM-VVYDMVYNPGET------PFLAEAKS-LGTKTIDGLGMLVAQAALAFELW  251 (270)
T ss_pred             CCCCCCCCCCCCHHHcC--CCC-EEEEeccCCCCC------HHHHHHHH-CCCeeeCCHHHHHHHHHHHHHHH
Confidence            65432     2244566  544 4454   34322      48888845 48888888776665555544433

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=96.27  E-value=0.1  Score=51.40  Aligned_cols=102  Identities=14%  Similarity=0.135  Sum_probs=64.7

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHH--------HHHhcCCC----------CCccCCHHH
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALK--------LANAFDWP----------LKVFPGHQE   68 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--------~~~~~~~~----------~~~~~~~~~   68 (376)
                      .||+|||+|.||......++..   +++|+ ++|++++.++++.+        +.++..+.          +...+++++
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~a---G~~V~-l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~   81 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASA---GHQVL-LYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA   81 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhC---CCeEE-EEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH
Confidence            5799999999999988887764   88876 78999987654421        12211110          235677866


Q ss_pred             HhhCCCCCEEEEeCCCCccHHHHHH-HHc-CCCCCeEEEecCCCCCHHH
Q 017143           69 LLDSGLCDVVVVSTPNMTHYQILMD-IIN-HPKPHHVLVEKPLCTTVAD  115 (376)
Q Consensus        69 ~l~~~~~D~V~i~t~~~~h~~~~~~-al~-~~~g~~Vl~EKP~a~~~~e  115 (376)
                      + .  +.|+|+-+.|.........- -|+ ...+..|++----+.++.+
T Consensus        82 l-~--~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~  127 (503)
T TIGR02279        82 L-A--DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITA  127 (503)
T ss_pred             h-C--CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHH
Confidence            4 4  48999999998766444321 121 1134456655555666654

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=96.24  E-value=0.016  Score=54.83  Aligned_cols=80  Identities=19%  Similarity=0.129  Sum_probs=56.7

Q ss_pred             CCceeEEEEeCChhhH--HHHHHhhhhcC-CCcEEEEEeCCChhhHH----HHHHHHHhcCCC--CCccCCHHHHhhCCC
Q 017143            4 NDTVKYGIIGMGMMGR--EHFINLHHLRS-QGVSVVCIADPHLQSRQ----QALKLANAFDWP--LKVFPGHQELLDSGL   74 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~--~~~~~~~~~~~-~~~~~~~v~d~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~l~~~~   74 (376)
                      |+++||+|||.|+...  ...-.+.+.+. +..+ ++++|.++++.+    .++.+.++.|.+  +..++|.+++|+.  
T Consensus         1 m~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~e-l~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~g--   77 (442)
T COG1486           1 MKKFKIVIIGGGSTYTPKLLLGDLARTEELPVRE-LALYDIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREALEG--   77 (442)
T ss_pred             CCcceEEEECCCccccHHHHHHHHhcCccCCcce-EEEEeCCHHHHHHHHHHHHHHHHhhCCCeEEEEecCHHHHhcC--
Confidence            3579999999998653  22223333311 3445 568999999886    556667777877  4668899999987  


Q ss_pred             CCEEEEeCCCCc
Q 017143           75 CDVVVVSTPNMT   86 (376)
Q Consensus        75 ~D~V~i~t~~~~   86 (376)
                      .|.|+.+-....
T Consensus        78 AdfVi~~~rvG~   89 (442)
T COG1486          78 ADFVITQIRVGG   89 (442)
T ss_pred             CCEEEEEEeeCC
Confidence            899998877643

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.20  E-value=0.02  Score=53.67  Aligned_cols=104  Identities=13%  Similarity=0.160  Sum_probs=63.9

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCC----CcEEEEEeCCChh--hHHHHHHHHHh-----c--C--CC--CCccCCHH
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQ----GVSVVCIADPHLQ--SRQQALKLANA-----F--D--WP--LKVFPGHQ   67 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~----~~~~~~v~d~~~~--~~~~~~~~~~~-----~--~--~~--~~~~~~~~   67 (376)
                      +++||+|||+|.||......+......    +-+ |-+|.++++  ....++.+.+.     |  |  +|  +...+|++
T Consensus        10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~-V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~   88 (365)
T PTZ00345         10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNE-VRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLK   88 (365)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCe-EEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHH
Confidence            468999999999999887777765100    123 446666663  11123333321     1  2  22  23467888


Q ss_pred             HHhhCCCCCEEEEeCCCCccHHHHHHHHc--CC-CCC-eEEEecCCCC
Q 017143           68 ELLDSGLCDVVVVSTPNMTHYQILMDIIN--HP-KPH-HVLVEKPLCT  111 (376)
Q Consensus        68 ~~l~~~~~D~V~i~t~~~~h~~~~~~al~--~~-~g~-~Vl~EKP~a~  111 (376)
                      +++++  .|+|++++|++...+++.+.-.  .- .+. -|.|-|=+..
T Consensus        89 eav~~--aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~  134 (365)
T PTZ00345         89 EAVED--ADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIV  134 (365)
T ss_pred             HHHhc--CCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCccc
Confidence            88876  7999999999988777766432  10 232 3556776653

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=96.20  E-value=0.012  Score=54.20  Aligned_cols=63  Identities=24%  Similarity=0.394  Sum_probs=47.7

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      -.++||||+|.+|+..++.++..   +.+|.+ +|+....        ...++   .+.+++++|+.  .|+|++++|-.
T Consensus       145 gktvGIiG~G~IG~~vA~~~~~f---gm~V~~-~d~~~~~--------~~~~~---~~~~l~ell~~--sDvv~lh~Plt  207 (311)
T PRK08410        145 GKKWGIIGLGTIGKRVAKIAQAF---GAKVVY-YSTSGKN--------KNEEY---ERVSLEELLKT--SDIISIHAPLN  207 (311)
T ss_pred             CCEEEEECCCHHHHHHHHHHhhc---CCEEEE-ECCCccc--------cccCc---eeecHHHHhhc--CCEEEEeCCCC
Confidence            46899999999999988888776   888775 6775321        01132   35689999988  79999999943

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.19  E-value=0.023  Score=49.64  Aligned_cols=93  Identities=23%  Similarity=0.233  Sum_probs=60.0

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHH-HHHhcCCC-CCccCCHHHHhhC---CCCCEEEEe
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALK-LANAFDWP-LKVFPGHQELLDS---GLCDVVVVS   81 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~l~~---~~~D~V~i~   81 (376)
                      +++.|||+|.+|...++.|...   +-+++. .|.+++   ++++ .+.+++.. +....+-.+.|++   .+.|+|+++
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~---g~~Vv~-Id~d~~---~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~   73 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEE---GHNVVL-IDRDEE---RVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAA   73 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhC---CCceEE-EEcCHH---HHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEe
Confidence            5899999999999999888885   777774 578887   4444 33344433 1223344555554   468999999


Q ss_pred             CCCCccHH-HHHHHHcCCCCCeEEEec
Q 017143           82 TPNMTHYQ-ILMDIINHPKPHHVLVEK  107 (376)
Q Consensus        82 t~~~~h~~-~~~~al~~~~g~~Vl~EK  107 (376)
                      |.++.--. ++..|++. .|.+-.+-|
T Consensus        74 t~~d~~N~i~~~la~~~-~gv~~viar   99 (225)
T COG0569          74 TGNDEVNSVLALLALKE-FGVPRVIAR   99 (225)
T ss_pred             eCCCHHHHHHHHHHHHh-cCCCcEEEE
Confidence            99865444 44445553 244544444

>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=96.19  E-value=0.024  Score=52.29  Aligned_cols=100  Identities=25%  Similarity=0.268  Sum_probs=65.2

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH---hcC-C--C--------------CCcc--C
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN---AFD-W--P--------------LKVF--P   64 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~---~~~-~--~--------------~~~~--~   64 (376)
                      +||||-|.|+||+..++.+...  +++++++|-|+..+. +...-+-+   -+| +  +              ++++  .
T Consensus         3 ~ki~INGfGRIGr~v~r~~~~~--~~~~vvaiNd~~~~~-~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~~   79 (337)
T PTZ00023          3 VKLGINGFGRIGRLVFRAALER--EDVEVVAINDPFMTL-DYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVHVFFEK   79 (337)
T ss_pred             eEEEEECcChHHHHHHHHHHhc--CCeEEEEecCCCCCh-HHhhhhheeecCCCCCCCcEEecCCEEEECCeEEEEEeCC
Confidence            8999999999999988886654  789999998843221 12222211   011 0  0              1111  2


Q ss_pred             CHHHHhh-CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCC
Q 017143           65 GHQELLD-SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLC  110 (376)
Q Consensus        65 ~~~~~l~-~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a  110 (376)
                      +.+++-. +.++|+|+-||......+.+..++++|+ +-|.+--|+.
T Consensus        80 dp~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGa-k~V~iSap~~  125 (337)
T PTZ00023         80 DPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGA-KKVIMSAPPK  125 (337)
T ss_pred             ChhhCCccccCCCEEEEecchhcCHHHHHHHhhCCC-EEEEeCCCCC
Confidence            3444433 2469999999999999999999999553 5566655643

>PLN02928 oxidoreductase family protein

Probab=96.18  E-value=0.014  Score=54.61  Aligned_cols=72  Identities=19%  Similarity=0.168  Sum_probs=48.3

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHH------HhcCCCCCccCCHHHHhhCCCCCEEEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLA------NAFDWPLKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      .++||||+|.||+..+..++..   +.+|++ +|++..+. ....+.      ..+......+.++++++.+  .|+|++
T Consensus       160 ktvGIiG~G~IG~~vA~~l~af---G~~V~~-~dr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~--aDiVvl  232 (347)
T PLN02928        160 KTVFILGYGAIGIELAKRLRPF---GVKLLA-TRRSWTSE-PEDGLLIPNGDVDDLVDEKGGHEDIYEFAGE--ADIVVL  232 (347)
T ss_pred             CEEEEECCCHHHHHHHHHHhhC---CCEEEE-ECCCCChh-hhhhhccccccccccccccCcccCHHHHHhh--CCEEEE
Confidence            5899999999999988888776   788875 68764311 111000      0110000135789999988  799999


Q ss_pred             eCCCC
Q 017143           81 STPNM   85 (376)
Q Consensus        81 ~t~~~   85 (376)
                      ++|-.
T Consensus       233 ~lPlt  237 (347)
T PLN02928        233 CCTLT  237 (347)
T ss_pred             CCCCC
Confidence            99954

>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=96.16  E-value=0.067  Score=47.09  Aligned_cols=88  Identities=15%  Similarity=0.218  Sum_probs=67.9

Q ss_pred             hhHHHHHHHHHhcCCCC--CccC--CHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHH
Q 017143           44 QSRQQALKLANAFDWPL--KVFP--GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKV  119 (376)
Q Consensus        44 ~~~~~~~~~~~~~~~~~--~~~~--~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l  119 (376)
                      +-+...++.++++|+++  ..++  +.+.+.+  .+|++-|++.+-.+.+++.++-+  .||+|++-|+...+++|....
T Consensus        66 ~gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e--~vdilqIgs~~~~n~~LL~~va~--tgkPVilk~G~~~t~~e~~~A  141 (250)
T PRK13397         66 QGIRYLHEVCQEFGLLSVSEIMSERQLEEAYD--YLDVIQVGARNMQNFEFLKTLSH--IDKPILFKRGLMATIEEYLGA  141 (250)
T ss_pred             HHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHh--cCCEEEECcccccCHHHHHHHHc--cCCeEEEeCCCCCCHHHHHHH
Confidence            34466778888999982  3332  4445544  39999999999999999999999  899999999988999999999


Q ss_pred             HHHHHhCCCeEEEEee
Q 017143          120 VDAARKRPDILVQVGL  135 (376)
Q Consensus       120 ~~~a~~~~~~~~~v~~  135 (376)
                      ++...+.++-.+.+.+
T Consensus       142 ~e~i~~~Gn~~i~L~e  157 (250)
T PRK13397        142 LSYLQDTGKSNIILCE  157 (250)
T ss_pred             HHHHHHcCCCeEEEEc
Confidence            9988655443344443

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=96.15  E-value=0.045  Score=53.52  Aligned_cols=119  Identities=15%  Similarity=0.129  Sum_probs=73.0

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ..+++|+|+|.+|+.....+...   +.+++ +++++.+   ++++++++++..  . -+++++-.-.+.|+|+.|||..
T Consensus       332 ~k~vlIiGaGgiG~aia~~L~~~---G~~V~-i~~R~~~---~~~~la~~~~~~--~-~~~~~~~~l~~~DiVInatP~g  401 (477)
T PRK09310        332 NQHVAIVGAGGAAKAIATTLARA---GAELL-IFNRTKA---HAEALASRCQGK--A-FPLESLPELHRIDIIINCLPPS  401 (477)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHC---CCEEE-EEeCCHH---HHHHHHHHhccc--e-echhHhcccCCCCEEEEcCCCC
Confidence            35899999999999888888775   56765 6788876   566666665532  2 2233332224589999999988


Q ss_pred             ccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHH
Q 017143           86 THYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKL  146 (376)
Q Consensus        86 ~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~  146 (376)
                      ...+   ..+.     +++++=  ..++.+.. +.+.|++ .|..+.-|.......+..+.
T Consensus       402 ~~~~---~~l~-----~~v~D~--~Y~P~~T~-ll~~A~~-~G~~~~~G~~Ml~~Qa~~~f  450 (477)
T PRK09310        402 VTIP---KAFP-----PCVVDI--NTLPKHSP-YTQYARS-QGSSIIYGYEMFAEQALLQF  450 (477)
T ss_pred             Ccch---hHHh-----hhEEec--cCCCCCCH-HHHHHHH-CcCEEECcHHHHHHHHHHHH
Confidence            7532   2222     144441  11222222 6677744 48888777666554444444

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=96.14  E-value=0.018  Score=53.20  Aligned_cols=66  Identities=20%  Similarity=0.335  Sum_probs=48.1

Q ss_pred             ceeEEEEeCChhhHHHHHHhh-hhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLH-HLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~-~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      -.++||||+|.||+...+.++ ..   +.+|+ ++|+....     +....+++   .+.+++++|+.  .|+|++++|-
T Consensus       145 gktvGIiG~G~IG~~va~~l~~~f---gm~V~-~~~~~~~~-----~~~~~~~~---~~~~l~ell~~--sDvv~lh~pl  210 (323)
T PRK15409        145 HKTLGIVGMGRIGMALAQRAHFGF---NMPIL-YNARRHHK-----EAEERFNA---RYCDLDTLLQE--SDFVCIILPL  210 (323)
T ss_pred             CCEEEEEcccHHHHHHHHHHHhcC---CCEEE-EECCCCch-----hhHHhcCc---EecCHHHHHHh--CCEEEEeCCC
Confidence            368999999999998887776 55   77877 46765421     11223453   35699999987  8999999994


Q ss_pred             C
Q 017143           85 M   85 (376)
Q Consensus        85 ~   85 (376)
                      .
T Consensus       211 t  211 (323)
T PRK15409        211 T  211 (323)
T ss_pred             C
Confidence            3

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.12  E-value=0.042  Score=47.18  Aligned_cols=36  Identities=28%  Similarity=0.328  Sum_probs=29.2

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL   43 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~   43 (376)
                      +.-||.|||+|.+|...+..|...   ++.-+.++|.|.
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~---Gv~~i~lvD~d~   55 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGA---GVGTIVIVDDDH   55 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHc---CCCeEEEecCCE
Confidence            357899999999999999888886   665556788874

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=96.12  E-value=0.12  Score=47.43  Aligned_cols=125  Identities=14%  Similarity=0.201  Sum_probs=74.8

Q ss_pred             eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCcc
Q 017143            8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMTH   87 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~h   87 (376)
                      ++.|+|+|.+|...+..++..   +.+.+.+++.++++++.+.    .+.    .++.-++  ....+|+|+-++....-
T Consensus       147 ~vlV~G~G~vG~~a~q~ak~~---G~~~v~~~~~~~~rl~~a~----~~~----~i~~~~~--~~~g~Dvvid~~G~~~~  213 (308)
T TIGR01202       147 PDLIVGHGTLGRLLARLTKAA---GGSPPAVWETNPRRRDGAT----GYE----VLDPEKD--PRRDYRAIYDASGDPSL  213 (308)
T ss_pred             cEEEECCCHHHHHHHHHHHHc---CCceEEEeCCCHHHHHhhh----hcc----ccChhhc--cCCCCCEEEECCCCHHH
Confidence            689999999999877655554   7777777788777543332    222    2221111  22358999999997766


Q ss_pred             HHHHHHHHcCCCCCeEEEe---cCCCCCHHHHHHHHHHHHhCCCeEEEEeecccc-CHHHHHHHHHHHcCCCC
Q 017143           88 YQILMDIINHPKPHHVLVE---KPLCTTVADCKKVVDAARKRPDILVQVGLEYRY-MPPVAKLIQIVKSGSIG  156 (376)
Q Consensus        88 ~~~~~~al~~~~g~~Vl~E---KP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~-~p~~~~~k~~i~~g~iG  156 (376)
                      .+.+.++++. .|+-|++=   .|...+.      .... .+ ++.+.-..  .+ ...+..+.+++++|.+-
T Consensus       214 ~~~~~~~l~~-~G~iv~~G~~~~~~~~~~------~~~~-~~-~~~i~~~~--~~~~~~~~~~~~l~~~g~i~  275 (308)
T TIGR01202       214 IDTLVRRLAK-GGEIVLAGFYTEPVNFDF------VPAF-MK-EARLRIAA--EWQPGDLHAVRELIESGALS  275 (308)
T ss_pred             HHHHHHhhhc-CcEEEEEeecCCCccccc------chhh-hc-ceEEEEec--ccchhHHHHHHHHHHcCCCC
Confidence            6778888875 37766653   2322221      1222 22 33333222  22 23577888999988774

>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=96.11  E-value=0.037  Score=51.14  Aligned_cols=98  Identities=17%  Similarity=0.235  Sum_probs=64.9

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH---hcC-C--C--------------CCcc--
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN---AFD-W--P--------------LKVF--   63 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~---~~~-~--~--------------~~~~--   63 (376)
                      ++||||-|.|+||+..++++...  +++++++|-|....  +...-+-+   -+| +  +              ++++  
T Consensus         2 ~~ki~INGfGRIGR~~~r~~~~~--~~~~vvaINd~~~~--~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~I~v~~~   77 (343)
T PRK07729          2 KTKVAINGFGRIGRMVFRKAIKE--SAFEIVAINASYPS--ETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKKIRLLNN   77 (343)
T ss_pred             ceEEEEECcChHHHHHHHHHhhc--CCcEEEEecCCCCH--HHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEc
Confidence            38999999999999988886654  78999999886432  22222222   111 0  0              1111  


Q ss_pred             CCHHHHhh-CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecC
Q 017143           64 PGHQELLD-SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKP  108 (376)
Q Consensus        64 ~~~~~~l~-~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP  108 (376)
                      .+.+++-. +.++|+|+-||....+.+.+..++++|+ +-|.+--|
T Consensus        78 ~dp~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGa-k~V~iSap  122 (343)
T PRK07729         78 RDPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGA-KKVILTAP  122 (343)
T ss_pred             CChhhCcccccCCCEEEEccchhhhHhHHHHHHHcCC-eEEEeCCC
Confidence            23444433 2369999999999999999999999542 55555544

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=96.11  E-value=0.018  Score=54.33  Aligned_cols=62  Identities=32%  Similarity=0.550  Sum_probs=47.2

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      -.+|||||+|.+|+.....+...   ++++. ++|+....   .     . +.  ..+.++++++++  .|+|++++|-
T Consensus       116 gktvGIIG~G~IG~~va~~l~a~---G~~V~-~~Dp~~~~---~-----~-~~--~~~~~l~ell~~--aDiV~lh~Pl  177 (381)
T PRK00257        116 ERTYGVVGAGHVGGRLVRVLRGL---GWKVL-VCDPPRQE---A-----E-GD--GDFVSLERILEE--CDVISLHTPL  177 (381)
T ss_pred             cCEEEEECCCHHHHHHHHHHHHC---CCEEE-EECCcccc---c-----c-cC--ccccCHHHHHhh--CCEEEEeCcC
Confidence            36899999999999988888876   88977 46764321   1     1 11  246789999987  8999999995

>PLN02306 hydroxypyruvate reductase

Probab=96.09  E-value=0.022  Score=53.95  Aligned_cols=71  Identities=18%  Similarity=0.239  Sum_probs=47.6

Q ss_pred             ceeEEEEeCChhhHHHHHHhh-hhcCCCcEEEEEeCCChhhHHHHHHHHHhcCC----------CCCccCCHHHHhhCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLH-HLRSQGVSVVCIADPHLQSRQQALKLANAFDW----------PLKVFPGHQELLDSGL   74 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~-~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~~~   74 (376)
                      -.+|||||+|.+|+..++.+. ..   +.+|.+ +|+....  ....+...++.          ....+.+++++|+.  
T Consensus       165 gktvGIiG~G~IG~~vA~~l~~~f---Gm~V~~-~d~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~--  236 (386)
T PLN02306        165 GQTVGVIGAGRIGSAYARMMVEGF---KMNLIY-YDLYQST--RLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE--  236 (386)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcC---CCEEEE-ECCCCch--hhhhhhhhhcccccccccccccccccCCHHHHHhh--
Confidence            368999999999999887764 54   788774 6876532  11111112221          01124689999988  


Q ss_pred             CCEEEEeCCC
Q 017143           75 CDVVVVSTPN   84 (376)
Q Consensus        75 ~D~V~i~t~~   84 (376)
                      .|+|++++|-
T Consensus       237 sDiV~lh~Pl  246 (386)
T PLN02306        237 ADVISLHPVL  246 (386)
T ss_pred             CCEEEEeCCC
Confidence            7999999984

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.06  E-value=0.034  Score=51.76  Aligned_cols=35  Identities=26%  Similarity=0.369  Sum_probs=29.6

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL   43 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~   43 (376)
                      .-+|.|||+|..|...+..|...   ++.-+.++|+|.
T Consensus        24 ~~~VlIiG~GglGs~va~~La~a---Gvg~i~lvD~D~   58 (338)
T PRK12475         24 EKHVLIVGAGALGAANAEALVRA---GIGKLTIADRDY   58 (338)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHc---CCCEEEEEcCCc
Confidence            46899999999999998888886   776677889875

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=96.04  E-value=0.079  Score=46.36  Aligned_cols=115  Identities=22%  Similarity=0.311  Sum_probs=69.2

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCC----------ChhhHHHHHHHHHhcCCCCCcc-----CCHHH
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADP----------HLQSRQQALKLANAFDWPLKVF-----PGHQE   68 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~----------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~   68 (376)
                      .+.+||+|.|+|.+|+..+..|.+.   +.+|++|+|.          |.+   ...+..++.|- +..|     -+.++
T Consensus        29 l~~~~v~I~G~G~VG~~~a~~L~~~---g~~vv~v~D~~g~~~~~~Gld~~---~l~~~~~~~g~-l~~~~~~~~~~~~~  101 (227)
T cd01076          29 LAGARVAIQGFGNVGSHAARFLHEA---GAKVVAVSDSDGTIYNPDGLDVP---ALLAYKKEHGS-VLGFPGAERITNEE  101 (227)
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEECCCCeEECCCCCCHH---HHHHHHHhcCC-cccCCCceecCCcc
Confidence            3568999999999999988888774   8999999998          655   44444444431 1122     13455


Q ss_pred             HhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 017143           69 LLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVG  134 (376)
Q Consensus        69 ~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~  134 (376)
                      ++.. ++|+++=|++...=-.-....++    ..+++|--=.....++.++++   ++ |+.+...
T Consensus       102 i~~~-~~Dvlip~a~~~~i~~~~~~~l~----a~~I~egAN~~~t~~a~~~L~---~r-Gi~~~PD  158 (227)
T cd01076         102 LLEL-DCDILIPAALENQITADNADRIK----AKIIVEAANGPTTPEADEILH---ER-GVLVVPD  158 (227)
T ss_pred             ceee-cccEEEecCccCccCHHHHhhce----eeEEEeCCCCCCCHHHHHHHH---HC-CCEEECh
Confidence            6665 58999988876533333333444    247777522111144444432   33 6665443

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=96.02  E-value=0.035  Score=51.89  Aligned_cols=76  Identities=17%  Similarity=0.134  Sum_probs=47.6

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC---------------CccCCHHHHh
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL---------------KVFPGHQELL   70 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~l   70 (376)
                      ++||+|||+|.+|......+...   +.+|+. +++++.    .+.+. +.|+.+               ...++. +.+
T Consensus         2 ~mkI~IiG~G~mG~~~A~~L~~~---G~~V~~-~~r~~~----~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~   71 (341)
T PRK08229          2 MARICVLGAGSIGCYLGGRLAAA---GADVTL-IGRARI----GDELR-AHGLTLTDYRGRDVRVPPSAIAFSTDP-AAL   71 (341)
T ss_pred             CceEEEECCCHHHHHHHHHHHhc---CCcEEE-EecHHH----HHHHH-hcCceeecCCCcceecccceeEeccCh-hhc
Confidence            36899999999999888888775   667664 566542    22222 223221               122344 333


Q ss_pred             hCCCCCEEEEeCCCCccHHHHHH
Q 017143           71 DSGLCDVVVVSTPNMTHYQILMD   93 (376)
Q Consensus        71 ~~~~~D~V~i~t~~~~h~~~~~~   93 (376)
                      .  +.|+|++++++....+.+..
T Consensus        72 ~--~~D~vil~vk~~~~~~~~~~   92 (341)
T PRK08229         72 A--TADLVLVTVKSAATADAAAA   92 (341)
T ss_pred             c--CCCEEEEEecCcchHHHHHH
Confidence            3  48999999998766555443

>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase

Probab=96.02  E-value=0.025  Score=55.04  Aligned_cols=90  Identities=22%  Similarity=0.242  Sum_probs=61.0

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC---CHHHHhhCCCCCEEEEeC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP---GHQELLDSGLCDVVVVST   82 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~D~V~i~t   82 (376)
                      .-|+.|||+|..|...+..+.+....++++++++|.++.+   ...   ..|++  ++.   ++.+++++.++|.|+|+.
T Consensus       128 ~~rvLIiGag~~~~~l~~~L~~~~~~g~~vvG~idd~~~~---~~~---~~gvp--Vlg~~~dl~~~i~~~~vd~ViIA~  199 (451)
T TIGR03023       128 LRRVLIVGAGELGRRLAERLARNPELGYRVVGFFDDRPDA---RTG---VRGVP--VLGKLDDLEELIREGEVDEVYIAL  199 (451)
T ss_pred             CCcEEEEeCCHHHHHHHHHHHhCccCCcEEEEEEeCCCcc---ccc---cCCCC--ccCCHHHHHHHHHhcCCCEEEEee
Confidence            4689999999999988888877644579999999876652   111   14665  444   455667777899999999


Q ss_pred             CCCccH---HHHHHHHcCCCCCeEEE
Q 017143           83 PNMTHY---QILMDIINHPKPHHVLV  105 (376)
Q Consensus        83 ~~~~h~---~~~~~al~~~~g~~Vl~  105 (376)
                      |...+.   +++..|-+  .|..|.+
T Consensus       200 p~~~~~~~~~ll~~~~~--~gv~V~v  223 (451)
T TIGR03023       200 PLAAEDRILELLDALED--LTVDVRL  223 (451)
T ss_pred             CcccHHHHHHHHHHHHh--cCCEEEE
Confidence            875542   22333444  4555544

Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=96.01  E-value=0.045  Score=52.31  Aligned_cols=65  Identities=25%  Similarity=0.264  Sum_probs=47.6

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      -+++|+|+|.+|+..+..++.+   +.+| .++|+++.+   +.+ +...|+.  + .+++++++.  .|+|+.+|.+
T Consensus       213 k~VlViG~G~IG~~vA~~lr~~---Ga~V-iV~d~dp~r---a~~-A~~~G~~--v-~~l~eal~~--aDVVI~aTG~  277 (425)
T PRK05476        213 KVVVVAGYGDVGKGCAQRLRGL---GARV-IVTEVDPIC---ALQ-AAMDGFR--V-MTMEEAAEL--GDIFVTATGN  277 (425)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC---CCEE-EEEcCCchh---hHH-HHhcCCE--e-cCHHHHHhC--CCEEEECCCC
Confidence            5899999999999988888876   6775 478998874   322 2334654  3 367888864  8999988864

>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=95.98  E-value=0.092  Score=46.94  Aligned_cols=88  Identities=13%  Similarity=0.193  Sum_probs=68.2

Q ss_pred             hhhHHHHHHHHHhcCCCC--CccC--CHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHH
Q 017143           43 LQSRQQALKLANAFDWPL--KVFP--GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKK  118 (376)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~--~~~~--~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~  118 (376)
                      .+.+...++.++++|+++  ..++  +.+.+. +. +|++-|++..-.+.+++.++.+  .||+|++.++++.+++|...
T Consensus        75 ~~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~-~~-~d~lkI~s~~~~n~~LL~~~a~--~gkPVilk~G~~~t~~e~~~  150 (260)
T TIGR01361        75 EEGLKLLRRAADEHGLPVVTEVMDPRDVEIVA-EY-ADILQIGARNMQNFELLKEVGK--QGKPVLLKRGMGNTIEEWLY  150 (260)
T ss_pred             HHHHHHHHHHHHHhCCCEEEeeCChhhHHHHH-hh-CCEEEECcccccCHHHHHHHhc--CCCcEEEeCCCCCCHHHHHH
Confidence            344556778889999981  3333  444444 44 8999999999999999999999  89999999999999999999


Q ss_pred             HHHHHHhCCCeEEEEe
Q 017143          119 VVDAARKRPDILVQVG  134 (376)
Q Consensus       119 l~~~a~~~~~~~~~v~  134 (376)
                      .++..++.++-.+.+.
T Consensus       151 Ave~i~~~Gn~~i~l~  166 (260)
T TIGR01361       151 AAEYILSSGNGNVILC  166 (260)
T ss_pred             HHHHHHHcCCCcEEEE
Confidence            9999965544344443

The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=95.98  E-value=0.018  Score=55.05  Aligned_cols=64  Identities=25%  Similarity=0.312  Sum_probs=47.9

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      -.++||||+|.+|+..+..+...   +.++++ +|+.+..        ...++  ....+++++++.  .|+|++++|-.
T Consensus       151 gktvGIiG~G~IG~~vA~~~~~f---Gm~V~~-~d~~~~~--------~~~~~--~~~~~l~ell~~--sDiVslh~Plt  214 (409)
T PRK11790        151 GKTLGIVGYGHIGTQLSVLAESL---GMRVYF-YDIEDKL--------PLGNA--RQVGSLEELLAQ--SDVVSLHVPET  214 (409)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC---CCEEEE-ECCCccc--------ccCCc--eecCCHHHHHhh--CCEEEEcCCCC
Confidence            35899999999999988888876   889875 6765321        01122  245689999988  79999999953

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=95.97  E-value=0.066  Score=46.09  Aligned_cols=129  Identities=14%  Similarity=0.139  Sum_probs=79.2

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC--CccCCHHHHhhCCCCCEEEEeCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL--KVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      -||.|||.|.+|..-+..|...   +..++ |++++..  +..++++++.++..  +.|.  .+.+.  +.|+|+++|.+
T Consensus        10 k~vlVvGgG~va~rk~~~Ll~~---ga~Vt-Vvsp~~~--~~l~~l~~~~~i~~~~~~~~--~~dl~--~~~lVi~at~d   79 (205)
T TIGR01470        10 RAVLVVGGGDVALRKARLLLKA---GAQLR-VIAEELE--SELTLLAEQGGITWLARCFD--ADILE--GAFLVIAATDD   79 (205)
T ss_pred             CeEEEECcCHHHHHHHHHHHHC---CCEEE-EEcCCCC--HHHHHHHHcCCEEEEeCCCC--HHHhC--CcEEEEECCCC
Confidence            5899999999998888888775   67766 5566544  24556666555431  2333  23344  48999999998


Q ss_pred             C-ccHHHHHHHHcCCCCCeEEE-ecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHc
Q 017143           85 M-THYQILMDIINHPKPHHVLV-EKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKS  152 (376)
Q Consensus        85 ~-~h~~~~~~al~~~~g~~Vl~-EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~  152 (376)
                      . ....+...|-+  +|+.|-+ ..|--     +.=..-+.-+++++.+.+.-+-.---..+.+|+.|++
T Consensus        80 ~~ln~~i~~~a~~--~~ilvn~~d~~e~-----~~f~~pa~~~~g~l~iaisT~G~sP~la~~lr~~ie~  142 (205)
T TIGR01470        80 EELNRRVAHAARA--RGVPVNVVDDPEL-----CSFIFPSIVDRSPVVVAISSGGAAPVLARLLRERIET  142 (205)
T ss_pred             HHHHHHHHHHHHH--cCCEEEECCCccc-----CeEEEeeEEEcCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            6 77777777877  7777742 23321     1111111224556666666554444455666666653

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=95.92  E-value=0.027  Score=51.61  Aligned_cols=69  Identities=26%  Similarity=0.373  Sum_probs=50.1

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      --+|+|+|+|.||+..+..|...   + ..+..+.|.+.+-    +.+.+++-   -+-|+++++..  .|+|+|++|-.
T Consensus       162 gK~vgilG~G~IG~~ia~rL~~F---g-~~i~y~~r~~~~~----~~~~~~~~---~~~d~~~~~~~--sD~ivv~~pLt  228 (336)
T KOG0069|consen  162 GKTVGILGLGRIGKAIAKRLKPF---G-CVILYHSRTQLPP----EEAYEYYA---EFVDIEELLAN--SDVIVVNCPLT  228 (336)
T ss_pred             CCEEEEecCcHHHHHHHHhhhhc---c-ceeeeecccCCch----hhHHHhcc---cccCHHHHHhh--CCEEEEecCCC
Confidence            35899999999999998888776   4 5555677766532    22333332   26789999988  79999999965


Q ss_pred             cc
Q 017143           86 TH   87 (376)
Q Consensus        86 ~h   87 (376)
                      .+
T Consensus       229 ~~  230 (336)
T KOG0069|consen  229 KE  230 (336)
T ss_pred             HH
Confidence            43

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.92  E-value=0.047  Score=53.74  Aligned_cols=89  Identities=12%  Similarity=0.079  Sum_probs=58.4

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      -||.|+|+|..|...+..+...   +.++++ +|..+..   .+. .++.|+.+....+..+.+.+  +|+|+++..-..
T Consensus        13 ~~v~V~G~G~sG~aa~~~L~~~---G~~v~~-~D~~~~~---~~~-l~~~g~~~~~~~~~~~~l~~--~D~VV~SpGi~~   82 (488)
T PRK03369         13 APVLVAGAGVTGRAVLAALTRF---GARPTV-CDDDPDA---LRP-HAERGVATVSTSDAVQQIAD--YALVVTSPGFRP   82 (488)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHC---CCEEEE-EcCCHHH---HHH-HHhCCCEEEcCcchHhHhhc--CCEEEECCCCCC
Confidence            4899999999999888766654   788775 8876553   223 34467641111223344544  797777665554


Q ss_pred             cHHHHHHHHcCCCCCeEEEec
Q 017143           87 HYQILMDIINHPKPHHVLVEK  107 (376)
Q Consensus        87 h~~~~~~al~~~~g~~Vl~EK  107 (376)
                      ..+.+.+|.+  +|++|+-|-
T Consensus        83 ~~p~~~~a~~--~gi~v~~~i  101 (488)
T PRK03369         83 TAPVLAAAAA--AGVPIWGDV  101 (488)
T ss_pred             CCHHHHHHHH--CCCcEeeHH
Confidence            5577888888  889998653

>PRK06988 putative formyltransferase; Provisional

Probab=95.92  E-value=0.028  Score=51.71  Aligned_cols=76  Identities=11%  Similarity=0.050  Sum_probs=52.7

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH-----HHHHHHHHhcCCCCCccCC-----HHHHhhCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSR-----QQALKLANAFDWPLKVFPG-----HQELLDSGLC   75 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~-----~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~   75 (376)
                      |+||+++|.+.+|...+..|.+.   ++++++|+...+.+.     ...+++|+++|+|+....+     ..+.+....+
T Consensus         2 ~mkIvf~Gs~~~a~~~L~~L~~~---~~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~gip~~~~~~~~~~~~~~~l~~~~~   78 (312)
T PRK06988          2 KPRAVVFAYHNVGVRCLQVLLAR---GVDVALVVTHEDNPTENIWFGSVAAVAAEHGIPVITPADPNDPELRAAVAAAAP   78 (312)
T ss_pred             CcEEEEEeCcHHHHHHHHHHHhC---CCCEEEEEcCCCCCccCcCCCHHHHHHHHcCCcEEccccCCCHHHHHHHHhcCC
Confidence            37999999999998888888764   688888886532211     2467889999998221122     3345666679


Q ss_pred             CEEEEeCCC
Q 017143           76 DVVVVSTPN   84 (376)
Q Consensus        76 D~V~i~t~~   84 (376)
                      |+++++.-.
T Consensus        79 Dliv~~~~~   87 (312)
T PRK06988         79 DFIFSFYYR   87 (312)
T ss_pred             CEEEEehhc
Confidence            988877643

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=95.90  E-value=0.038  Score=50.86  Aligned_cols=73  Identities=16%  Similarity=0.215  Sum_probs=46.6

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH-HHHHHHHHh---cCCC-CCccCCHHHHhhCCCCCEEEE
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSR-QQALKLANA---FDWP-LKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~~---~~~~-~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      ..||+|||+|.+|...+..+...  +-..-+.++|++++.. ..+.++..-   ++.. +..+++|++ +++  .|+|+|
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~--~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~--adivvi   77 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAK--GLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TAN--SKVVIV   77 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhc--CCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCC--CCEEEE
Confidence            57999999999999877777665  4444455889877633 223333221   1111 233478887 454  899999


Q ss_pred             eCC
Q 017143           81 STP   83 (376)
Q Consensus        81 ~t~   83 (376)
                      +.-
T Consensus        78 taG   80 (312)
T cd05293          78 TAG   80 (312)
T ss_pred             CCC
Confidence            554

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=95.89  E-value=0.031  Score=50.61  Aligned_cols=122  Identities=20%  Similarity=0.205  Sum_probs=71.0

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc----CCC-CCccC--CHHHHhhCCCCCEEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF----DWP-LKVFP--GHQELLDSGLCDVVV   79 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~----~~~-~~~~~--~~~~~l~~~~~D~V~   79 (376)
                      -++.|+|+|..|+..+.++...   ++.-+.|++|+.+   +++++++++    +.. +...+  ++++.+.  ..|+|+
T Consensus       128 k~vlilGaGGaarAi~~aL~~~---g~~~i~i~nR~~~---ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~--~~divI  199 (283)
T PRK14027        128 DSVVQVGAGGVGNAVAYALVTH---GVQKLQVADLDTS---RAQALADVINNAVGREAVVGVDARGIEDVIA--AADGVV  199 (283)
T ss_pred             CeEEEECCcHHHHHHHHHHHHC---CCCEEEEEcCCHH---HHHHHHHHHhhccCcceEEecCHhHHHHHHh--hcCEEE
Confidence            4799999999999988888876   6666778999987   566666554    211 01111  2233444  389999


Q ss_pred             EeCCCCccHH----HHHHHHcCCCCCeEEEe---cCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHH
Q 017143           80 VSTPNMTHYQ----ILMDIINHPKPHHVLVE---KPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKL  146 (376)
Q Consensus        80 i~t~~~~h~~----~~~~al~~~~g~~Vl~E---KP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~  146 (376)
                      -+||-..+..    +-...+.  .+ +++++   +|.-      -.+.+.|++. |..+.-|............
T Consensus       200 NaTp~Gm~~~~~~~~~~~~l~--~~-~~v~D~vY~P~~------T~ll~~A~~~-G~~~~~Gl~MLv~Qa~~~f  263 (283)
T PRK14027        200 NATPMGMPAHPGTAFDVSCLT--KD-HWVGDVVYMPIE------TELLKAARAL-GCETLDGTRMAIHQAVDAF  263 (283)
T ss_pred             EcCCCCCCCCCCCCCCHHHcC--CC-cEEEEcccCCCC------CHHHHHHHHC-CCEEEccHHHHHHHHHHHH
Confidence            9999655421    1122334  22 33333   3321      1355556343 6666666655554444433

>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type

Probab=95.87  E-value=0.1  Score=47.62  Aligned_cols=144  Identities=13%  Similarity=0.096  Sum_probs=84.7

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhc--------------------CCCcEEEEEeCCChhhHH--HHHHHHHhcCCCCC---
Q 017143            7 VKYGIIGMGMMGREHFINLHHLR--------------------SQGVSVVCIADPHLQSRQ--QALKLANAFDWPLK---   61 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~--------------------~~~~~~~~v~d~~~~~~~--~~~~~~~~~~~~~~---   61 (376)
                      +||||+|.|+-+...+..+.-.+                    ..++++|+-+|.|..+..  ..+++-++-+...+   
T Consensus         1 irvai~GvGncaSslvqGieyyk~~~~~~~~~Glm~~~~g~y~~~DIe~vaafDVd~~KVGkdlseai~~~pN~t~~~~~   80 (351)
T TIGR03450         1 VRVAIVGVGNCASSLVQGVEYYYNADPTSTVPGLMHVQFGPYHVGDVEFVAAFDVDAKKVGFDLSDAIFASENNTIKIAD   80 (351)
T ss_pred             CeEEEEeccHHHHHHHHHHHHHHhCCCccCcCCccccccCCcCccceEEEEEEeccccccCccHHHHHhcCCCCceeeec
Confidence            69999999998775555432111                    137999999999988652  22222222221100   


Q ss_pred             ------------ccC------------------CHHHHhhCCCCCEEEEeCCCCcc---HHHHHHHHcCCCCCeEEEecC
Q 017143           62 ------------VFP------------------GHQELLDSGLCDVVVVSTPNMTH---YQILMDIINHPKPHHVLVEKP  108 (376)
Q Consensus        62 ------------~~~------------------~~~~~l~~~~~D~V~i~t~~~~h---~~~~~~al~~~~g~~Vl~EKP  108 (376)
                                  +.+                  |.-+.|.+..+|+++...|....   .-+|..||+  +|.+-.-=-|
T Consensus        81 vp~~~v~V~~G~~lDg~~~~~~~~~~~~~~~~~dv~~~lk~~~~dVlvnylPvGs~~A~~~YA~AAl~--aG~afVN~~P  158 (351)
T TIGR03450        81 VPPTGVTVQRGPTLDGLGKYYRDTIEESDAEPVDVVQALKDAKVDVLVSYLPVGSEEADKFYAQCAID--AGVAFVNALP  158 (351)
T ss_pred             cCCCCCEEeecccccchhhHhhccccccccCHHHHHHHHHhcCCCEEEECCccchHHHHHHHHHHHHH--cCCceEeccC
Confidence                        111                  34455777789999998887533   345778899  7777777777


Q ss_pred             CCCCHHHHHHHHHHHHhCCCeEEEEeeccc----cCHHHHHHHHHHHcCCCC
Q 017143          109 LCTTVADCKKVVDAARKRPDILVQVGLEYR----YMPPVAKLIQIVKSGSIG  156 (376)
Q Consensus       109 ~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r----~~p~~~~~k~~i~~g~iG  156 (376)
                      ....  ...++.+.+++ .|+++ +|--..    -....+.+-+++.+-.+.
T Consensus       159 ~~ia--~~p~~a~~f~e-~glPi-~GDD~Ksq~GaTi~h~vLa~lf~~Rgl~  206 (351)
T TIGR03450       159 VFIA--SDPEWAKKFTD-AGVPI-VGDDIKSQVGATITHRVLAKLFEDRGVR  206 (351)
T ss_pred             cccc--CCHHHHHHHHH-CCCCE-ecccccccCCCchHHHHHHHHHHHcCCc
Confidence            4222  33457777744 47764 444433    233445556666544443

This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=95.87  E-value=0.06  Score=46.60  Aligned_cols=36  Identities=28%  Similarity=0.417  Sum_probs=29.4

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL   43 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~   43 (376)
                      +..+|+|||+|.+|...+..|...   ++.-+.++|.|.
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~---Gvg~i~lvD~D~   62 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARS---GVGNLKLVDFDV   62 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHc---CCCeEEEEeCCE
Confidence            357999999999999999988876   666566888873

>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=95.87  E-value=0.04  Score=51.82  Aligned_cols=101  Identities=24%  Similarity=0.215  Sum_probs=67.7

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHH---HHHHhcC------------------CCCCcc-
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQAL---KLANAFD------------------WPLKVF-   63 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~---~~~~~~~------------------~~~~~~-   63 (376)
                      ++||||+|.|.+|+..++.+.....+.++|++|-|....  +...   ++...+|                  -+++++ 
T Consensus        60 ~~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd~~~~--~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~v~~  137 (395)
T PLN03096         60 KIKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDTGGV--KQASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIKVVS  137 (395)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcCCCCH--HHHHHHHhhcccCCCcCCcEEEecCCEEEECCEEEEEEE
Confidence            489999999999999998877543368999999886542  1221   2222111                  001112 


Q ss_pred             -CCHHHHhh-CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCC
Q 017143           64 -PGHQELLD-SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPL  109 (376)
Q Consensus        64 -~~~~~~l~-~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~  109 (376)
                       .+.+++-. +.++|+|+-||......+.+...+++| -|-|++--|.
T Consensus       138 ~~dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aG-AkkV~iSap~  184 (395)
T PLN03096        138 DRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAG-AKKVLITAPG  184 (395)
T ss_pred             cCCcccccccccCCCEEEECcchhhhHHHHHHHHHCC-CEEEEeCCCC
Confidence             12444333 246999999999999999999999965 3677777663

>PRK06932 glycerate dehydrogenase; Provisional

Probab=95.86  E-value=0.025  Score=52.09  Aligned_cols=62  Identities=23%  Similarity=0.340  Sum_probs=46.6

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      -.++||||+|.+|+.....++..   +.+|++ +++...     .    ...   ..+.+++++|+.  .|+|++++|-.
T Consensus       147 gktvgIiG~G~IG~~va~~l~~f---g~~V~~-~~~~~~-----~----~~~---~~~~~l~ell~~--sDiv~l~~Plt  208 (314)
T PRK06932        147 GSTLGVFGKGCLGTEVGRLAQAL---GMKVLY-AEHKGA-----S----VCR---EGYTPFEEVLKQ--ADIVTLHCPLT  208 (314)
T ss_pred             CCEEEEECCCHHHHHHHHHHhcC---CCEEEE-ECCCcc-----c----ccc---cccCCHHHHHHh--CCEEEEcCCCC
Confidence            36999999999999988888776   888876 465422     0    111   136789999988  89999999943

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=95.86  E-value=0.02  Score=52.61  Aligned_cols=67  Identities=19%  Similarity=0.287  Sum_probs=49.2

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-CCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      -.+|||||+|.||+.....+...   ++++.+ +|++....   .      ++. ...+.++++++.+  .|+|+++.|.
T Consensus       136 g~tvgIvG~G~IG~~vA~~l~af---G~~V~~-~~~~~~~~---~------~~~~~~~~~~l~e~l~~--aDvvv~~lPl  200 (312)
T PRK15469        136 DFTIGILGAGVLGSKVAQSLQTW---GFPLRC-WSRSRKSW---P------GVQSFAGREELSAFLSQ--TRVLINLLPN  200 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC---CCEEEE-EeCCCCCC---C------CceeecccccHHHHHhc--CCEEEECCCC
Confidence            36899999999999988888876   888875 67755421   1      111 1134689999987  8999999996


Q ss_pred             Ccc
Q 017143           85 MTH   87 (376)
Q Consensus        85 ~~h   87 (376)
                      ...
T Consensus       201 t~~  203 (312)
T PRK15469        201 TPE  203 (312)
T ss_pred             CHH
Confidence            543

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=95.80  E-value=0.029  Score=55.59  Aligned_cols=66  Identities=26%  Similarity=0.441  Sum_probs=49.5

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      .+|||||+|.+|+.....++..   +.++++ +|+.... +.    +.++++.  ..+++++++++  .|+|++++|..
T Consensus       139 ktvgIiG~G~IG~~vA~~l~~f---G~~V~~-~d~~~~~-~~----~~~~g~~--~~~~l~ell~~--aDvV~l~lPlt  204 (525)
T TIGR01327       139 KTLGVIGLGRIGSIVAKRAKAF---GMKVLA-YDPYISP-ER----AEQLGVE--LVDDLDELLAR--ADFITVHTPLT  204 (525)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC---CCEEEE-ECCCCCh-hH----HHhcCCE--EcCCHHHHHhh--CCEEEEccCCC
Confidence            5899999999999988888776   788775 6775321 11    2345643  45789999987  89999999954

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=95.79  E-value=0.06  Score=51.32  Aligned_cols=77  Identities=17%  Similarity=0.178  Sum_probs=53.1

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      -+|+|+|+|.+|...+..++..   +.+++ ++|+++.+++    .+.++|+.  .. +.++++..  .|+|+.+|.+..
T Consensus       203 ktVvViG~G~IG~~va~~ak~~---Ga~Vi-V~d~d~~R~~----~A~~~G~~--~~-~~~e~v~~--aDVVI~atG~~~  269 (413)
T cd00401         203 KVAVVAGYGDVGKGCAQSLRGQ---GARVI-VTEVDPICAL----QAAMEGYE--VM-TMEEAVKE--GDIFVTTTGNKD  269 (413)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC---CCEEE-EEECChhhHH----HHHhcCCE--Ec-cHHHHHcC--CCEEEECCCCHH
Confidence            4899999999999988887775   67755 5899887433    34456754  22 45677754  899999887543


Q ss_pred             cHHHH-HHHHc
Q 017143           87 HYQIL-MDIIN   96 (376)
Q Consensus        87 h~~~~-~~al~   96 (376)
                      =.... ..+++
T Consensus       270 ~i~~~~l~~mk  280 (413)
T cd00401         270 IITGEHFEQMK  280 (413)
T ss_pred             HHHHHHHhcCC
Confidence            23333 55566

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=95.79  E-value=0.056  Score=49.85  Aligned_cols=100  Identities=18%  Similarity=0.187  Sum_probs=64.3

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH---hcC---CC--------------CCccC-
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN---AFD---WP--------------LKVFP-   64 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~---~~~---~~--------------~~~~~-   64 (376)
                      |+||||-|.|+||+..++.+....++++++++|-|....  +...-+-+   -+|   -+              ++++. 
T Consensus         1 ~~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~~~~--~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~I~v~~~   78 (337)
T PRK07403          1 MIRVAINGFGRIGRNFLRCWLGRENSQLELVAINDTSDP--RTNAHLLKYDSMLGKLNADISADENSITVNGKTIKCVSD   78 (337)
T ss_pred             CeEEEEEccChHHHHHHHHHHhccCCCeEEEEecCCCCH--HHHHHHHhhccCCCCCCCcEEEcCCEEEECCEEEEEEEc
Confidence            579999999999999888765532258999999886422  22222221   111   00              11111 


Q ss_pred             -CHHHHhh-CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecC
Q 017143           65 -GHQELLD-SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKP  108 (376)
Q Consensus        65 -~~~~~l~-~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP  108 (376)
                       +.+++-. +.++|+|+-||......+.+..++++|+ |-|++--|
T Consensus        79 ~dp~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGa-k~V~iSap  123 (337)
T PRK07403         79 RNPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGA-KKVLITAP  123 (337)
T ss_pred             CCcccCChhhcCCCEEEeccchhhhHHHHHHHhhCCc-EEEEeCCC
Confidence             1222222 1269999999999999999999999552 56666656

>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional

Probab=95.77  E-value=0.1  Score=50.90  Aligned_cols=88  Identities=11%  Similarity=0.022  Sum_probs=59.7

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCH---HHHhhCCCCCEEEEeC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGH---QELLDSGLCDVVVVST   82 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~D~V~i~t   82 (376)
                      .-|+.|||+|..|......+.+.+..+++++|++|.++.         .  +.++.++.+.   .+++++.++|-|+|+.
T Consensus       143 ~rrVLIvGaG~~g~~l~~~L~~~~~~g~~vVGfiDdd~~---------~--g~~VpvlG~~~dL~~~v~~~~IdeViIAi  211 (463)
T PRK10124        143 KRMVAVAGDLPAGQMLLESFRNEPWLGFEVVGVYHDPKP---------G--GVSNDWAGNLQQLVEDAKAGKIHNVYIAM  211 (463)
T ss_pred             CCcEEEEECCHHHHHHHHHHhcCccCCeEEEEEEeCCcc---------c--cCCCCcCCCHHHHHHHHHhCCCCEEEEeC
Confidence            357999999999998888887764458999999986542         0  2222245554   4556667899999999


Q ss_pred             CCCccHH---HHHHHHcCCCCCeEEEe
Q 017143           83 PNMTHYQ---ILMDIINHPKPHHVLVE  106 (376)
Q Consensus        83 ~~~~h~~---~~~~al~~~~g~~Vl~E  106 (376)
                      |...+.+   ++..|-+  .|.+|.+=
T Consensus       212 p~~~~~~l~ell~~~~~--~~v~V~iv  236 (463)
T PRK10124        212 SMCDGARVKKLVRQLAD--TTCSVLLI  236 (463)
T ss_pred             CCcchHHHHHHHHHHHH--cCCeEEEe
Confidence            8765432   3334555  56666543

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=95.75  E-value=0.084  Score=46.20  Aligned_cols=115  Identities=17%  Similarity=0.136  Sum_probs=68.7

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcE--EEEEeCCC----hhhH----HHHHHHHHhcCCCCCccCCHHHHhhCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVS--VVCIADPH----LQSR----QQALKLANAFDWPLKVFPGHQELLDSGLC   75 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~--~~~v~d~~----~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   75 (376)
                      ..|+.|+|+|..|...+..+...   ++.  -+.++|++    .++.    +..++++++++.. ....++.+.+..  +
T Consensus        25 ~~rvlvlGAGgAg~aiA~~L~~~---G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~-~~~~~l~~~l~~--~   98 (226)
T cd05311          25 EVKIVINGAGAAGIAIARLLLAA---GAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPE-KTGGTLKEALKG--A   98 (226)
T ss_pred             CCEEEEECchHHHHHHHHHHHHc---CcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccC-cccCCHHHHHhc--C
Confidence            46999999999999888777665   665  66789998    4432    1235566665422 121367677765  8


Q ss_pred             CEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeE-EEEe
Q 017143           76 DVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDIL-VQVG  134 (376)
Q Consensus        76 D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~-~~v~  134 (376)
                      |+|+-+||....-+...+.+.  . .++++  |+. ++.+ ..+.+.+++. |.. +..|
T Consensus        99 dvlIgaT~~G~~~~~~l~~m~--~-~~ivf--~ls-nP~~-e~~~~~A~~~-ga~i~a~G  150 (226)
T cd05311          99 DVFIGVSRPGVVKKEMIKKMA--K-DPIVF--ALA-NPVP-EIWPEEAKEA-GADIVATG  150 (226)
T ss_pred             CEEEeCCCCCCCCHHHHHhhC--C-CCEEE--EeC-CCCC-cCCHHHHHHc-CCcEEEeC
Confidence            999999986554444455554  2 23333  333 2211 2255555343 663 5555

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=95.72  E-value=0.028  Score=55.71  Aligned_cols=66  Identities=27%  Similarity=0.470  Sum_probs=49.0

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      -.+|||||+|.+|+.....++..   +.++++ +|+.... +.    +..+++.  .. ++++++++  .|+|++++|..
T Consensus       140 gktvgIiG~G~IG~~vA~~l~~f---G~~V~~-~d~~~~~-~~----~~~~g~~--~~-~l~ell~~--aDiV~l~lP~t  205 (526)
T PRK13581        140 GKTLGIIGLGRIGSEVAKRAKAF---GMKVIA-YDPYISP-ER----AAQLGVE--LV-SLDELLAR--ADFITLHTPLT  205 (526)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC---CCEEEE-ECCCCCh-hH----HHhcCCE--EE-cHHHHHhh--CCEEEEccCCC
Confidence            35899999999999988888776   788774 6775431 11    2344653  33 89999987  79999999964

>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=95.70  E-value=0.094  Score=48.33  Aligned_cols=100  Identities=21%  Similarity=0.208  Sum_probs=66.5

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH---hcC-C--C--------------CCcc--
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN---AFD-W--P--------------LKVF--   63 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~---~~~-~--~--------------~~~~--   63 (376)
                      ++||||-|.|+||+..++.+...  +++++++|-|....  +...-+-+   -+| +  +              +.++  
T Consensus         2 ~~~i~inGfGRIGr~~~r~~~~~--~~~~vvaiNd~~~~--~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~v~~~   77 (331)
T PRK15425          2 TIKVGINGFGRIGRIVFRAAQKR--SDIEIVAINDLLDA--DYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAE   77 (331)
T ss_pred             ceEEEEEeeChHHHHHHHHHHHC--CCCEEEEEecCCCH--HHHHHHHccccCCCCcCCcEEecCCEEEECCeEEEEEEc
Confidence            38999999999999988886654  78999999886432  22222221   011 0  0              1111  


Q ss_pred             CCHHHHhh-CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCC
Q 017143           64 PGHQELLD-SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLC  110 (376)
Q Consensus        64 ~~~~~~l~-~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a  110 (376)
                      .+.+++-. +.++|+|+-||......+.+.+++++| -|-|.+--|+.
T Consensus        78 ~dp~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aG-ak~V~iSap~~  124 (331)
T PRK15425         78 RDPANLKWDEVGVDVVAEATGLFLTDETARKHITAG-AKKVVMTGPSK  124 (331)
T ss_pred             CChhhCcccccCCCEEEEecchhhcHHHHHHHHHCC-CEEEEeCCCCC
Confidence            13444332 236999999999999999999999955 36677776643

>PRK15076 alpha-galactosidase; Provisional

Probab=95.69  E-value=0.027  Score=54.19  Aligned_cols=115  Identities=10%  Similarity=0.027  Sum_probs=67.3

Q ss_pred             eeEEEEeCChhhH--HHHHHhhhhcC-CCcEEEEEeCCChhhHHHHHHHHH----hcCCC--CCccCCHHHHhhCCCCCE
Q 017143            7 VKYGIIGMGMMGR--EHFINLHHLRS-QGVSVVCIADPHLQSRQQALKLAN----AFDWP--LKVFPGHQELLDSGLCDV   77 (376)
Q Consensus         7 ~~v~iiG~G~~g~--~~~~~~~~~~~-~~~~~~~v~d~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~l~~~~~D~   77 (376)
                      +||+|||+|.+|.  .++..+..... ++.+| .++|+++++++.+.++.+    ..+.+  +..++|..+.+++  .|+
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~ev-vLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~d--ADf   78 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEI-ALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQG--ADY   78 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEE-EEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCC--CCE
Confidence            6999999999874  34445542211 34464 489999987765544433    33432  4557788888876  899


Q ss_pred             EEEeCCCC-ccHH--HH-HHHHcCCCCCeE-EEec--C-----CCCCHHHHHHHHHHHHhC
Q 017143           78 VVVSTPNM-THYQ--IL-MDIINHPKPHHV-LVEK--P-----LCTTVADCKKVVDAARKR  126 (376)
Q Consensus        78 V~i~t~~~-~h~~--~~-~~al~~~~g~~V-l~EK--P-----~a~~~~e~~~l~~~a~~~  126 (376)
                      |+++.... .+..  .= .=.++  .|..- ..|-  |     .-.|....+++.+..++.
T Consensus        79 Vv~ti~vg~~~~~~~~De~Iplk--~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~  137 (431)
T PRK15076         79 VINAIQVGGYEPCTVTDFEIPKK--YGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEV  137 (431)
T ss_pred             EeEeeeeCCcchhhhhhhhhHHH--cCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHH
Confidence            99988875 3322  11 12466  55330 0132  1     233566666666666443

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=95.66  E-value=0.16  Score=46.44  Aligned_cols=115  Identities=12%  Similarity=0.197  Sum_probs=67.9

Q ss_pred             CCCCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhC-CCCCEEE
Q 017143            1 MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDS-GLCDVVV   79 (376)
Q Consensus         1 m~~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~D~V~   79 (376)
                      |+...+..||+||++-||+..+-++..   .+|.|. ++.|...+.+...+-. ..|.++-...|+++|... ..|..|+
T Consensus         1 m~q~~~~digLiGLaVMGqnLiLN~~d---~Gf~v~-~yNRT~skvD~flane-ak~~~i~ga~S~ed~v~klk~PR~ii   75 (487)
T KOG2653|consen    1 MSQTPKADIGLIGLAVMGQNLILNIAD---KGFTVC-AYNRTTSKVDEFLANE-AKGTKIIGAYSLEDFVSKLKKPRVII   75 (487)
T ss_pred             CCCccccchhhhhHhhhhhhhhhcccc---cCceEE-EeccchHhHHHHHHHh-hcCCcccCCCCHHHHHHhcCCCcEEE
Confidence            666567899999999999998766666   489866 5788777443222111 125544456789999875 3477776


Q ss_pred             EeCCCCccHHHHHHH----HcCCCCCeEEEecCCCCCHHHHHHHHHHH
Q 017143           80 VSTPNMTHYQILMDI----INHPKPHHVLVEKPLCTTVADCKKVVDAA  123 (376)
Q Consensus        80 i~t~~~~h~~~~~~a----l~~~~g~~Vl~EKP~a~~~~e~~~l~~~a  123 (376)
                      +..-...-.+..++.    |+  .| .|+++--=..-...-++-.+++
T Consensus        76 llvkAG~pVD~~I~~L~p~Le--kg-DiIIDGGNs~y~dT~RR~~el~  120 (487)
T KOG2653|consen   76 LLVKAGAPVDQFIEELVPYLE--KG-DIIIDGGNSEYQDTERRCRELA  120 (487)
T ss_pred             EEeeCCCcHHHHHHHHHhhcC--CC-CEEEeCCcccCcchHHHHHHHH
Confidence            655443333333332    33  22 4555444444444444444444

>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional

Probab=95.64  E-value=0.083  Score=48.88  Aligned_cols=104  Identities=20%  Similarity=0.157  Sum_probs=68.5

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhc-CCCcEEEEEeCCChhh-HHHHHHHHHhcC-----------------CCCCcc--C
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLR-SQGVSVVCIADPHLQS-RQQALKLANAFD-----------------WPLKVF--P   64 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~-~~~~~~~~v~d~~~~~-~~~~~~~~~~~~-----------------~~~~~~--~   64 (376)
                      ++||||+|.|.+|+..++.+.... ++++++++|-|..... ..-..+....+|                 -++.++  .
T Consensus         1 ~~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~   80 (336)
T PRK13535          1 TIRVAINGFGRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDDAIRLLHER   80 (336)
T ss_pred             CeEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcC
Confidence            479999999999999988876531 2689999998765321 111111112111                 001122  2


Q ss_pred             CHHHHhh-CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCC
Q 017143           65 GHQELLD-SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLC  110 (376)
Q Consensus        65 ~~~~~l~-~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a  110 (376)
                      +.+++-. +.++|+|+-||......+.+..++++| -|-|.+--|..
T Consensus        81 ~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aG-Ak~V~iSap~~  126 (336)
T PRK13535         81 DIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAG-AKKVLFSHPGS  126 (336)
T ss_pred             CcccCcccccCCCEEEEccchhhhHHHHHHHHHcC-CEEEEecCCcc
Confidence            4444433 246999999999999999999999954 26788887764

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=95.64  E-value=0.047  Score=46.85  Aligned_cols=130  Identities=16%  Similarity=0.146  Sum_probs=71.8

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHH-HHhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQ-ELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~D~V~i~t~~   84 (376)
                      .-+|.|||.|.+|..-+..|...   +.+++ |++++...  ...+++.+..+. ..-..++ +.+.  +.|+|+.+|.+
T Consensus        10 ~k~vLVIGgG~va~~ka~~Ll~~---ga~V~-VIs~~~~~--~l~~l~~~~~i~-~~~~~~~~~~l~--~adlViaaT~d   80 (202)
T PRK06718         10 NKRVVIVGGGKVAGRRAITLLKY---GAHIV-VISPELTE--NLVKLVEEGKIR-WKQKEFEPSDIV--DAFLVIAATND   80 (202)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC---CCeEE-EEcCCCCH--HHHHHHhCCCEE-EEecCCChhhcC--CceEEEEcCCC
Confidence            46999999999998888777775   56766 44554431  344555443332 1111222 2233  48999999988


Q ss_pred             Cc-cHHHHHHHHcCCCCCeEEE-ecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHc
Q 017143           85 MT-HYQILMDIINHPKPHHVLV-EKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKS  152 (376)
Q Consensus        85 ~~-h~~~~~~al~~~~g~~Vl~-EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~  152 (376)
                      .. ...+...| +  +++.|-+ ..|     +.+.=..-+.-+++++.+.+.-+..---..+.+|+.|++
T Consensus        81 ~elN~~i~~~a-~--~~~lvn~~d~~-----~~~~f~~Pa~~~~g~l~iaIsT~G~sP~la~~lr~~ie~  142 (202)
T PRK06718         81 PRVNEQVKEDL-P--ENALFNVITDA-----ESGNVVFPSALHRGKLTISVSTDGASPKLAKKIRDELEA  142 (202)
T ss_pred             HHHHHHHHHHH-H--hCCcEEECCCC-----ccCeEEEeeEEEcCCeEEEEECCCCChHHHHHHHHHHHH
Confidence            64 44444445 6  5555544 222     222222222224556666666554433345566666653

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=95.64  E-value=0.096  Score=49.60  Aligned_cols=104  Identities=20%  Similarity=0.232  Sum_probs=65.0

Q ss_pred             ceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      ..+|+||| +|.||......+...   +.+|+ ++|+++.                   ++.++++.+  .|+|++|+|.
T Consensus        98 ~~~I~IiGG~GlmG~slA~~l~~~---G~~V~-~~d~~~~-------------------~~~~~~~~~--aDlVilavP~  152 (374)
T PRK11199         98 LRPVVIVGGKGQLGRLFAKMLTLS---GYQVR-ILEQDDW-------------------DRAEDILAD--AGMVIVSVPI  152 (374)
T ss_pred             cceEEEEcCCChhhHHHHHHHHHC---CCeEE-EeCCCcc-------------------hhHHHHHhc--CCEEEEeCcH
Confidence            47899999 999999999888875   66755 5676421                   235566655  8999999999


Q ss_pred             CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCH
Q 017143           85 MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMP  141 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p  141 (376)
                      ..-.+++.+.... ..-.|+++- .+....-..++.+.. .  + . ++|...-+.|
T Consensus       153 ~~~~~~~~~l~~l-~~~~iv~Dv-~SvK~~~~~~~~~~~-~--~-~-fvg~HPm~G~  202 (374)
T PRK11199        153 HLTEEVIARLPPL-PEDCILVDL-TSVKNAPLQAMLAAH-S--G-P-VLGLHPMFGP  202 (374)
T ss_pred             HHHHHHHHHHhCC-CCCcEEEEC-CCccHHHHHHHHHhC-C--C-C-EEeeCCCCCC
Confidence            8766666554331 112455554 333334445554433 1  2 2 5655555555

>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6

Probab=95.63  E-value=0.0069  Score=45.16  Aligned_cols=90  Identities=21%  Similarity=0.182  Sum_probs=49.2

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      |||.|||.|  |+.|.-+++-.+.+.++-+.++--++-    ...++..+.++..-++.+.++..+..+|+|+|..-..+
T Consensus         1 MkVLviGsG--gREHAia~~l~~s~~v~~v~~aPGN~G----~~~~~~~~~~~~~d~~~l~~~a~~~~idlvvvGPE~pL   74 (100)
T PF02844_consen    1 MKVLVIGSG--GREHAIAWKLSQSPSVEEVYVAPGNPG----TAELGKNVPIDITDPEELADFAKENKIDLVVVGPEAPL   74 (100)
T ss_dssp             EEEEEEESS--HHHHHHHHHHTTCTTEEEEEEEE--TT----GGGTSEEE-S-TT-HHHHHHHHHHTTESEEEESSHHHH
T ss_pred             CEEEEECCC--HHHHHHHHHHhcCCCCCEEEEeCCCHH----HHhhceecCCCCCCHHHHHHHHHHcCCCEEEECChHHH
Confidence            799999999  566666554433367766666544443    22222222222122333444444567999999876555


Q ss_pred             cHHHHHHHHcCCCCCeEE
Q 017143           87 HYQILMDIINHPKPHHVL  104 (376)
Q Consensus        87 h~~~~~~al~~~~g~~Vl  104 (376)
                      -.=++-..-+  +|..||
T Consensus        75 ~~Gl~D~l~~--~gi~vf   90 (100)
T PF02844_consen   75 VAGLADALRA--AGIPVF   90 (100)
T ss_dssp             HTTHHHHHHH--TT-CEE
T ss_pred             HHHHHHHHHH--CCCcEE
Confidence            5555555556  677665

3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=95.48  E-value=0.029  Score=45.21  Aligned_cols=74  Identities=24%  Similarity=0.380  Sum_probs=45.2

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHH-HHHHHH---HhcCCCCCccCCHHHHhhCCCCCEEEEe
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQ-QALKLA---NAFDWPLKVFPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~l~~~~~D~V~i~   81 (376)
                      +||+|||+ |.+|...+..+...  +-..-+.++|+++++.+ .+.++.   ...+.+.....+..+.+++  .|+|+++
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~--~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~--aDivvit   76 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQ--GLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKD--ADIVVIT   76 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHT--TTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTT--ESEEEET
T ss_pred             CEEEEECCCChHHHHHHHHHHhC--CCCCceEEeccCcccceeeehhhhhhhhhccccccccccccccccc--ccEEEEe
Confidence            59999999 99999888777776  44443668999976331 222222   1122222223333444444  7999998


Q ss_pred             CCC
Q 017143           82 TPN   84 (376)
Q Consensus        82 t~~   84 (376)
                      ...
T Consensus        77 ag~   79 (141)
T PF00056_consen   77 AGV   79 (141)
T ss_dssp             TST
T ss_pred             ccc
Confidence            753

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=95.48  E-value=0.044  Score=50.55  Aligned_cols=79  Identities=22%  Similarity=0.278  Sum_probs=48.4

Q ss_pred             CCCCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH-HHHHHHHHh--cCCCCCc-cCCHHHHhhCCCCC
Q 017143            1 MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSR-QQALKLANA--FDWPLKV-FPGHQELLDSGLCD   76 (376)
Q Consensus         1 m~~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~~--~~~~~~~-~~~~~~~l~~~~~D   76 (376)
                      |..+...||+|||+|.+|...+..+...  +-+.-+.++|++++.+ ..+.++..-  +...+.. .+++++ +++  .|
T Consensus         1 ~~~~~~~ki~iiGaG~vG~~~a~~l~~~--~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~-~~~--ad   75 (315)
T PRK00066          1 MMKKQHNKVVLVGDGAVGSSYAYALVNQ--GIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSD-CKD--AD   75 (315)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHhc--CCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHH-hCC--CC
Confidence            4344568999999999999877777765  4554466889987743 122222211  1011112 356766 454  89


Q ss_pred             EEEEeCCC
Q 017143           77 VVVVSTPN   84 (376)
Q Consensus        77 ~V~i~t~~   84 (376)
                      +|+|+.-.
T Consensus        76 ivIitag~   83 (315)
T PRK00066         76 LVVITAGA   83 (315)
T ss_pred             EEEEecCC
Confidence            99997653

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=95.47  E-value=0.087  Score=45.36  Aligned_cols=131  Identities=12%  Similarity=0.019  Sum_probs=80.9

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc-CCHHHHhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF-PGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      .-+|.|||.|..|..-++.+.+.   +..++.++.....   ..+.+.++.++.  .. +.++.-.. .++++|+++|++
T Consensus        12 ~k~VlvvGgG~va~rKa~~ll~~---ga~v~Vvs~~~~~---el~~~~~~~~i~--~~~~~~~~~~~-~~~~lviaAt~d   82 (210)
T COG1648          12 GKKVLVVGGGSVALRKARLLLKA---GADVTVVSPEFEP---ELKALIEEGKIK--WIEREFDAEDL-DDAFLVIAATDD   82 (210)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhc---CCEEEEEcCCccH---HHHHHHHhcCcc--hhhcccChhhh-cCceEEEEeCCC
Confidence            46899999999999888888775   8888866655523   567777776654  22 23322222 238999999998


Q ss_pred             C-ccHHHHHHHHcCCCCCeEEE-ecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHc
Q 017143           85 M-THYQILMDIINHPKPHHVLV-EKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKS  152 (376)
Q Consensus        85 ~-~h~~~~~~al~~~~g~~Vl~-EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~  152 (376)
                      . .-..++..|-+  +++.|-+ ++|--.+     =+.-+.-+++.+.+.+.-...---..+.+|+.|++
T Consensus        83 ~~ln~~i~~~a~~--~~i~vNv~D~p~~~~-----f~~Pa~~~r~~l~iaIsT~G~sP~la~~ir~~Ie~  145 (210)
T COG1648          83 EELNERIAKAARE--RRILVNVVDDPELCD-----FIFPAIVDRGPLQIAISTGGKSPVLARLLREKIEA  145 (210)
T ss_pred             HHHHHHHHHHHHH--hCCceeccCCcccCc-----eecceeeccCCeEEEEECCCCChHHHHHHHHHHHH
Confidence            4 66667777777  6776654 5554322     22333325555554444333333355666776653

>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed

Probab=95.46  E-value=0.15  Score=47.88  Aligned_cols=81  Identities=12%  Similarity=0.205  Sum_probs=64.0

Q ss_pred             hhHHHHHHHHHhcCCCC--CccC--CHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHH
Q 017143           44 QSRQQALKLANAFDWPL--KVFP--GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKV  119 (376)
Q Consensus        44 ~~~~~~~~~~~~~~~~~--~~~~--~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l  119 (376)
                      +.....++.++++|+++  ..++  +.+. +.+. +|++-|++..-.+.+++.++-+  .||+|++.++++.+++|...-
T Consensus       169 e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~-l~~~-vd~lkI~s~~~~n~~LL~~~a~--~gkPVilk~G~~~t~~e~~~A  244 (360)
T PRK12595        169 EGLKILKQVADEYGLAVISEIVNPADVEV-ALDY-VDVIQIGARNMQNFELLKAAGR--VNKPVLLKRGLSATIEEFIYA  244 (360)
T ss_pred             HHHHHHHHHHHHcCCCEEEeeCCHHHHHH-HHHh-CCeEEECcccccCHHHHHHHHc--cCCcEEEeCCCCCCHHHHHHH
Confidence            33456677888999982  3333  3444 4444 9999999999999999999999  899999999999999999988


Q ss_pred             HHHHHhCCC
Q 017143          120 VDAARKRPD  128 (376)
Q Consensus       120 ~~~a~~~~~  128 (376)
                      ++...+.++
T Consensus       245 ve~i~~~Gn  253 (360)
T PRK12595        245 AEYIMSQGN  253 (360)
T ss_pred             HHHHHHCCC
Confidence            888855433

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=95.46  E-value=0.022  Score=53.07  Aligned_cols=136  Identities=13%  Similarity=0.100  Sum_probs=79.0

Q ss_pred             eEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHH-HHhhCCCCCEEEEeCCCC
Q 017143            8 KYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQ-ELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         8 ~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~D~V~i~t~~~   85 (376)
                      ||+||| +|..|...++.|.+..-|.++++.++.....    .+.+. ..+.+ ..+.+.+ +.+.  ++|+|+.|+|+.
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~----g~~~~-~~~~~-~~~~~~~~~~~~--~~D~v~~a~g~~   72 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSA----GRKVT-FKGKE-LEVNEAKIESFE--GIDIALFSAGGS   72 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccC----CCeee-eCCee-EEEEeCChHHhc--CCCEEEECCCHH
Confidence            689999 5999999999887721178888776544221    12221 11222 2233222 2333  499999999999


Q ss_pred             ccHHHHHHHHcCCCCCeEEEecCCCCC--------HHH--HHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCC
Q 017143           86 THYQILMDIINHPKPHHVLVEKPLCTT--------VAD--CKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSI  155 (376)
Q Consensus        86 ~h~~~~~~al~~~~g~~Vl~EKP~a~~--------~~e--~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~i  155 (376)
                      ...+++.++++  +|.. .++-+.+.-        +.|  -..|.+ + ...+  +..+-++.-......++-+.+.+.|
T Consensus        73 ~s~~~a~~~~~--~G~~-VID~ss~~R~~~~~p~~vpevN~~~i~~-~-~~~~--iianp~C~~t~~~l~l~pL~~~~~i  145 (339)
T TIGR01296        73 VSKEFAPKAAK--CGAI-VIDNTSAFRMDPDVPLVVPEVNLEDLKE-F-NTKG--IIANPNCSTIQMVVVLKPLHDEAKI  145 (339)
T ss_pred             HHHHHHHHHHH--CCCE-EEECCHHHhCCCCCCEEeCCcCHHHHhh-C-ccCC--EEECCCcHHHHHHHHHHHHHHhcCc
Confidence            99999999999  7774 443332111        111  112222 2 1123  4444444446666777788777776


Q ss_pred             Cce
Q 017143          156 GQV  158 (376)
Q Consensus       156 G~i  158 (376)
                      -++
T Consensus       146 ~~i  148 (339)
T TIGR01296       146 KRV  148 (339)
T ss_pred             cEE
Confidence            444

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=95.46  E-value=0.061  Score=49.50  Aligned_cols=74  Identities=22%  Similarity=0.256  Sum_probs=46.4

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHH-HHHHHHHhc--CCCC-CccCCHHHHhhCCCCCEEEEeC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQ-QALKLANAF--DWPL-KVFPGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~~~~--~~~~-~~~~~~~~~l~~~~~D~V~i~t   82 (376)
                      +||+|||+|.+|...+..+...  .-..-+.++|+++++.+ .+..+....  .-+. ...+++++ +.+  .|+|+|+.
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~--g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~-l~~--aDiViita   75 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLR--GLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYAD-CKG--ADVVVITA   75 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc--CCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHH-hCC--CCEEEEcc
Confidence            4899999999999877777765  33455668999887432 222332111  0011 12356655 444  89999998


Q ss_pred             CCC
Q 017143           83 PNM   85 (376)
Q Consensus        83 ~~~   85 (376)
                      +..
T Consensus        76 ~~~   78 (308)
T cd05292          76 GAN   78 (308)
T ss_pred             CCC
Confidence            853

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.45  E-value=0.082  Score=50.95  Aligned_cols=87  Identities=20%  Similarity=0.222  Sum_probs=56.1

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      .-+|.|||+|.+|...+..+++.   +.+++ ++|+++........+...      ...+.+.++.  +.|+|+.+.+..
T Consensus         3 ~~~i~iiGlG~~G~slA~~l~~~---G~~V~-g~D~~~~~~~~~~~~~~~------~~~~~~~~~~--~~dlvV~s~gi~   70 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFLAQK---GVYVI-GVDKSLEALQSCPYIHER------YLENAEEFPE--QVDLVVRSPGIK   70 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHHHHC---CCEEE-EEeCCccccchhHHHhhh------hcCCcHHHhc--CCCEEEECCCCC
Confidence            45899999999999877777664   66755 578766532211111111      1122333333  379888888777


Q ss_pred             ccHHHHHHHHcCCCCCeEEEe
Q 017143           86 THYQILMDIINHPKPHHVLVE  106 (376)
Q Consensus        86 ~h~~~~~~al~~~~g~~Vl~E  106 (376)
                      ...+.+.+|++  +|.+|..+
T Consensus        71 ~~~~~l~~A~~--~g~~vv~~   89 (418)
T PRK00683         71 KEHPWVQAAIA--SHIPVVTD   89 (418)
T ss_pred             CCcHHHHHHHH--CCCcEEEH
Confidence            77889999999  88775544

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=95.44  E-value=0.083  Score=50.95  Aligned_cols=65  Identities=20%  Similarity=0.302  Sum_probs=47.1

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      --+++|||+|.+|+..+..++..   +.+|+ ++++++.+   +.+ +...|+.   +.+++++++.  .|+|++++.
T Consensus       254 GKtVgVIG~G~IGr~vA~rL~a~---Ga~Vi-V~e~dp~~---a~~-A~~~G~~---~~~leell~~--ADIVI~atG  318 (476)
T PTZ00075        254 GKTVVVCGYGDVGKGCAQALRGF---GARVV-VTEIDPIC---ALQ-AAMEGYQ---VVTLEDVVET--ADIFVTATG  318 (476)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC---CCEEE-EEeCCchh---HHH-HHhcCce---eccHHHHHhc--CCEEEECCC
Confidence            35899999999999988888775   77754 68888763   212 2224643   3468899876  899999864

>PRK08223 hypothetical protein; Validated

Probab=95.43  E-value=0.15  Score=46.02  Aligned_cols=37  Identities=30%  Similarity=0.501  Sum_probs=30.5

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChh
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQ   44 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~   44 (376)
                      +.-||.|||+|..|...+..|+..   ++.-+.++|.|.=
T Consensus        26 ~~s~VlIvG~GGLGs~va~~LA~a---GVG~i~lvD~D~V   62 (287)
T PRK08223         26 RNSRVAIAGLGGVGGIHLLTLARL---GIGKFTIADFDVF   62 (287)
T ss_pred             hcCCEEEECCCHHHHHHHHHHHHh---CCCeEEEEeCCCc
Confidence            356999999999999999998886   6766778887653

>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP

Probab=95.41  E-value=0.067  Score=52.19  Aligned_cols=91  Identities=16%  Similarity=0.171  Sum_probs=59.6

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc--CCHHHHhhCCCCCEEEEeCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF--PGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~D~V~i~t~   83 (376)
                      +-|+.|||+|..|...+..+.+.+..+++++|++|.++...  ...   -.|+|  ++  +++.+.+.+.++|.|+|+.|
T Consensus       125 ~rrvlIiGag~~~~~l~~~l~~~~~~g~~vvGfidd~~~~~--~~~---i~g~p--Vlg~~~l~~~i~~~~id~ViIAip  197 (456)
T TIGR03022       125 GRPAVIIGAGQNAAILYRALQSNPQLGLRPLAVVDTDPAAS--GRL---LTGLP--VVGADDALRLYARTRYAYVIVAMP  197 (456)
T ss_pred             CceEEEEeCCHHHHHHHHHHhhCccCCcEEEEEEeCCcccc--ccc---cCCCc--ccChhHHHHHHHhCCCCEEEEecC
Confidence            35799999999999888888765445799999998765421  111   13555  33  45556666677999999998


Q ss_pred             CCcc---HHHHHHHHcCCCCC-eEEE
Q 017143           84 NMTH---YQILMDIINHPKPH-HVLV  105 (376)
Q Consensus        84 ~~~h---~~~~~~al~~~~g~-~Vl~  105 (376)
                      ....   .+++.++-+  .|. +|.+
T Consensus       198 ~~~~~~~~~ll~~l~~--~~v~~V~~  221 (456)
T TIGR03022       198 GTQAEDMARLVRKLGA--LHFRNVLI  221 (456)
T ss_pred             CccHHHHHHHHHHHHh--CCCeEEEE
Confidence            5433   333444544  455 5444

This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=95.41  E-value=0.048  Score=49.55  Aligned_cols=78  Identities=10%  Similarity=0.006  Sum_probs=50.7

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC--C-CccCCHHHH--hh--CCCCCEEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP--L-KVFPGHQEL--LD--SGLCDVVV   79 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~--l~--~~~~D~V~   79 (376)
                      -++.|+|+|..++..+..+...   ++.-+.|++|+++..+++++++++++..  . ..+.++++.  +.  ..+.|+|+
T Consensus       125 k~vlvlGaGGaarAi~~~l~~~---g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDivI  201 (288)
T PRK12749        125 KTMVLLGAGGASTAIGAQGAIE---GLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILT  201 (288)
T ss_pred             CEEEEECCcHHHHHHHHHHHHC---CCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEEE
Confidence            4799999999988766666664   6666778999865445778887765321  0 112333221  11  12489999


Q ss_pred             EeCCCCcc
Q 017143           80 VSTPNMTH   87 (376)
Q Consensus        80 i~t~~~~h   87 (376)
                      .+||...+
T Consensus       202 NaTp~Gm~  209 (288)
T PRK12749        202 NGTKVGMK  209 (288)
T ss_pred             ECCCCCCC
Confidence            99997654

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=95.40  E-value=0.3  Score=45.63  Aligned_cols=136  Identities=15%  Similarity=0.130  Sum_probs=77.9

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC----CHHH---HhhCCCCC-EE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP----GHQE---LLDSGLCD-VV   78 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---~l~~~~~D-~V   78 (376)
                      -+|.|.|+|.+|...+...+..   +.+.+.++++++++++    +++++|.. .+++    +.++   +.....+| +|
T Consensus       162 ~~vlV~G~g~vG~~~~~~a~~~---G~~~v~~~~~~~~~~~----~~~~~Ga~-~~i~~~~~~~~~~~~~~~~~~~d~~v  233 (347)
T PRK10309        162 KNVIIIGAGTIGLLAIQCAVAL---GAKSVTAIDINSEKLA----LAKSLGAM-QTFNSREMSAPQIQSVLRELRFDQLI  233 (347)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc---CCCeEEEECCCHHHHH----HHHHcCCc-eEecCcccCHHHHHHHhcCCCCCeEE
Confidence            4789999999998877666554   7775556677776443    33455643 2221    2233   23333578 77


Q ss_pred             EEeCCCCccHHHHHHHHcCCCCCeEEEecCC---CCCHHHHHHHHHHHHhCCCeEEEEeecc---cc-CHHHHHHHHHHH
Q 017143           79 VVSTPNMTHYQILMDIINHPKPHHVLVEKPL---CTTVADCKKVVDAARKRPDILVQVGLEY---RY-MPPVAKLIQIVK  151 (376)
Q Consensus        79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~---a~~~~e~~~l~~~a~~~~~~~~~v~~~~---r~-~p~~~~~k~~i~  151 (376)
                      +-|+....+...+.++++.+ |+-|++--+.   ..+...   +.... .+ ++.+.-.+..   .+ ...+..+.++++
T Consensus       234 ~d~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~---~~~~~-~~-~~~i~g~~~~~~~~~~~~~~~~~~~~~~  307 (347)
T PRK10309        234 LETAGVPQTVELAIEIAGPR-AQLALVGTLHHDLHLTSAT---FGKIL-RK-ELTVIGSWMNYSSPWPGQEWETASRLLT  307 (347)
T ss_pred             EECCCCHHHHHHHHHHhhcC-CEEEEEccCCCCcccChhh---hhHHh-hc-CcEEEEEeccccCCcchhHHHHHHHHHH
Confidence            77888777888889999853 6666664332   222212   22233 22 3333221111   11 145677888888


Q ss_pred             cCCCC
Q 017143          152 SGSIG  156 (376)
Q Consensus       152 ~g~iG  156 (376)
                      +|.+.
T Consensus       308 ~g~i~  312 (347)
T PRK10309        308 ERKLS  312 (347)
T ss_pred             cCCCC
Confidence            87763

>PLN02602 lactate dehydrogenase

Probab=95.40  E-value=0.051  Score=50.75  Aligned_cols=72  Identities=13%  Similarity=0.162  Sum_probs=44.9

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH-HHHHHHHH---hcCC-CCCccCCHHHHhhCCCCCEEEEe
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSR-QQALKLAN---AFDW-PLKVFPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~---~~~~-~~~~~~~~~~~l~~~~~D~V~i~   81 (376)
                      .||+|||+|.+|...+..+...  +-+.-+.++|++++.+ ..+.++..   -++. .+....++++ +++  .|+|+|+
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~--~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~-~~d--aDiVVit  112 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQ--DLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAV-TAG--SDLCIVT  112 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHH-hCC--CCEEEEC
Confidence            6999999999999877776655  4444566889887633 12222221   1121 1122357776 544  8999998


Q ss_pred             CC
Q 017143           82 TP   83 (376)
Q Consensus        82 t~   83 (376)
                      .-
T Consensus       113 AG  114 (350)
T PLN02602        113 AG  114 (350)
T ss_pred             CC
Confidence            54

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=95.40  E-value=0.064  Score=51.53  Aligned_cols=77  Identities=18%  Similarity=0.086  Sum_probs=54.6

Q ss_pred             eeEEEEeCChh-hHHHHHHhhhhc-C-CCcEEEEEeCCChhhHHHHHHHH----HhcCCC--CCccCCHHHHhhCCCCCE
Q 017143            7 VKYGIIGMGMM-GREHFINLHHLR-S-QGVSVVCIADPHLQSRQQALKLA----NAFDWP--LKVFPGHQELLDSGLCDV   77 (376)
Q Consensus         7 ~~v~iiG~G~~-g~~~~~~~~~~~-~-~~~~~~~v~d~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~l~~~~~D~   77 (376)
                      +||+|||.|+. +...+..+.+.. . +.-+ +.++|+|+++++...+++    ++.|.+  +..++|.+++|.+  .|.
T Consensus         1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~e-i~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~g--ADf   77 (425)
T cd05197           1 VKIAIIGGGSSFTPELVSGLLKTPEELPISE-VTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIID--ADF   77 (425)
T ss_pred             CEEEEECCchHhHHHHHHHHHcChhhCCCCE-EEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCC--CCE
Confidence            68999999984 445666665542 1 3344 558999999886654444    455644  5678999999987  899


Q ss_pred             EEEeCCCCc
Q 017143           78 VVVSTPNMT   86 (376)
Q Consensus        78 V~i~t~~~~   86 (376)
                      |+......-
T Consensus        78 Vi~~irvGg   86 (425)
T cd05197          78 VINQFRVGG   86 (425)
T ss_pred             EEEeeecCC
Confidence            998877653

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=95.39  E-value=0.11  Score=45.61  Aligned_cols=37  Identities=19%  Similarity=0.293  Sum_probs=30.3

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChh
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQ   44 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~   44 (376)
                      +..||.|||+|.+|...+..|...   ++.-+.++|.|.-
T Consensus        20 ~~~~VlivG~GglGs~va~~La~~---Gvg~i~lvD~D~v   56 (228)
T cd00757          20 KNARVLVVGAGGLGSPAAEYLAAA---GVGKLGLVDDDVV   56 (228)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHc---CCCEEEEEcCCEE
Confidence            357999999999999999999886   6766778877653

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=95.37  E-value=0.048  Score=50.16  Aligned_cols=69  Identities=20%  Similarity=0.164  Sum_probs=45.1

Q ss_pred             eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc-------CCCC-CccCCHHHHhhCCCCCEEE
Q 017143            8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF-------DWPL-KVFPGHQELLDSGLCDVVV   79 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~l~~~~~D~V~   79 (376)
                      ||+|||+|.+|...+..+...  .-..-+.++|+++++   ++.++..+       +... ....++++ +.  +.|+|+
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~--g~~~ei~l~D~~~~~---~~~~a~dL~~~~~~~~~~~~i~~~~~~~-l~--~aDIVI   73 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQ--GIADELVLIDINEEK---AEGEALDLEDALAFLPSPVKIKAGDYSD-CK--DADIVV   73 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhc--CCCCEEEEEeCCcch---hhHhHhhHHHHhhccCCCeEEEcCCHHH-hC--CCCEEE
Confidence            799999999999888877765  333235578998874   44333322       2111 12356665 44  489999


Q ss_pred             EeCCC
Q 017143           80 VSTPN   84 (376)
Q Consensus        80 i~t~~   84 (376)
                      +++..
T Consensus        74 itag~   78 (306)
T cd05291          74 ITAGA   78 (306)
T ss_pred             EccCC
Confidence            99985

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=95.36  E-value=0.097  Score=48.30  Aligned_cols=80  Identities=20%  Similarity=0.257  Sum_probs=46.0

Q ss_pred             CCCCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc----C---C-CCCccCCHHHHhhC
Q 017143            1 MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF----D---W-PLKVFPGHQELLDS   72 (376)
Q Consensus         1 m~~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~----~---~-~~~~~~~~~~~l~~   72 (376)
                      |+++ ++||+|||+|.+|......|.+.   +.+++. +.+++.  +...+-.-..    +   + ++..+++.++ +  
T Consensus         1 ~~~~-~m~I~IiG~GaiG~~lA~~L~~~---g~~V~~-~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~--   70 (313)
T PRK06249          1 MDSE-TPRIGIIGTGAIGGFYGAMLARA---GFDVHF-LLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAED-M--   70 (313)
T ss_pred             CCCc-CcEEEEECCCHHHHHHHHHHHHC---CCeEEE-EEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhh-c--
Confidence            5544 47999999999999888888774   667664 455542  1111100000    1   0 0112333332 2  


Q ss_pred             CCCCEEEEeCCCCccHHH
Q 017143           73 GLCDVVVVSTPNMTHYQI   90 (376)
Q Consensus        73 ~~~D~V~i~t~~~~h~~~   90 (376)
                      ..+|+|++|++.....+.
T Consensus        71 ~~~D~vilavK~~~~~~~   88 (313)
T PRK06249         71 PPCDWVLVGLKTTANALL   88 (313)
T ss_pred             CCCCEEEEEecCCChHhH
Confidence            348999999997755443

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=95.36  E-value=0.096  Score=47.78  Aligned_cols=96  Identities=14%  Similarity=0.146  Sum_probs=68.1

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCC-----HHHHhh---CCCCCEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPG-----HQELLD---SGLCDVV   78 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~---~~~~D~V   78 (376)
                      -.++|+|+|.+|...+...+..   +...+...|.++++++    +++++|-. +.+++     +.+.+.   +..+|.+
T Consensus       187 ~tvaV~GlGgVGlaaI~gA~~a---gA~~IiAvD~~~~Kl~----~A~~fGAT-~~vn~~~~~~vv~~i~~~T~gG~d~~  258 (366)
T COG1062         187 DTVAVFGLGGVGLAAIQGAKAA---GAGRIIAVDINPEKLE----LAKKFGAT-HFVNPKEVDDVVEAIVELTDGGADYA  258 (366)
T ss_pred             CeEEEEeccHhHHHHHHHHHHc---CCceEEEEeCCHHHHH----HHHhcCCc-eeecchhhhhHHHHHHHhcCCCCCEE
Confidence            4799999999999888777665   4444445699998654    45556653 44443     333333   2368999


Q ss_pred             EEeCCCCccHHHHHHHHcCCCCCeEEEecCCCC
Q 017143           79 VVSTPNMTHYQILMDIINHPKPHHVLVEKPLCT  111 (376)
Q Consensus        79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~  111 (376)
                      +.++-+..+...+++++.. -|+-|++=-|-+.
T Consensus       259 ~e~~G~~~~~~~al~~~~~-~G~~v~iGv~~~~  290 (366)
T COG1062         259 FECVGNVEVMRQALEATHR-GGTSVIIGVAGAG  290 (366)
T ss_pred             EEccCCHHHHHHHHHHHhc-CCeEEEEecCCCC
Confidence            9999999999999998875 4888888766544

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.33  E-value=0.093  Score=51.43  Aligned_cols=86  Identities=24%  Similarity=0.273  Sum_probs=55.1

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC--CHHHHhhCCCCCEEEEeCC-
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP--GHQELLDSGLCDVVVVSTP-   83 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~D~V~i~t~-   83 (376)
                      -||.|+|+|..|...+..+.+.   +.+++ ++|++...   ..++.++.|+.  .+.  +..+.+.  ++|+|+++.. 
T Consensus        16 ~~v~v~G~G~sG~a~a~~L~~~---G~~V~-~~D~~~~~---~~~~l~~~gi~--~~~~~~~~~~~~--~~d~vV~Spgi   84 (473)
T PRK00141         16 GRVLVAGAGVSGRGIAAMLSEL---GCDVV-VADDNETA---RHKLIEVTGVA--DISTAEASDQLD--SFSLVVTSPGW   84 (473)
T ss_pred             CeEEEEccCHHHHHHHHHHHHC---CCEEE-EECCChHH---HHHHHHhcCcE--EEeCCCchhHhc--CCCEEEeCCCC
Confidence            5799999999999766666664   66655 68876542   33444566875  332  2234444  4788766543 


Q ss_pred             CCccHHHHHHHHcCCCCCeEEEe
Q 017143           84 NMTHYQILMDIINHPKPHHVLVE  106 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~E  106 (376)
                      +..| +...+|.+  +|++|+-+
T Consensus        85 ~~~~-p~~~~a~~--~gi~v~~~  104 (473)
T PRK00141         85 RPDS-PLLVDAQS--QGLEVIGD  104 (473)
T ss_pred             CCCC-HHHHHHHH--CCCceeeH
Confidence            3455 55667777  78888753

>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=95.32  E-value=0.44  Score=42.71  Aligned_cols=101  Identities=12%  Similarity=0.244  Sum_probs=72.9

Q ss_pred             HHHHHHHHHhcCCCC--CccC--CHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHH
Q 017143           46 RQQALKLANAFDWPL--KVFP--GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVD  121 (376)
Q Consensus        46 ~~~~~~~~~~~~~~~--~~~~--~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~  121 (376)
                      ....+++++++|+++  ..++  +.+. +.+. +|++-|++.+-.+.++..++-+  .||+|++.++++.+++|+....+
T Consensus        80 l~~l~~~~~~~Gl~~~te~~d~~~~~~-l~~~-vd~~kIga~~~~n~~LL~~~a~--~gkPV~lk~G~~~s~~e~~~A~e  155 (266)
T PRK13398         80 LKILKEVGDKYNLPVVTEVMDTRDVEE-VADY-ADMLQIGSRNMQNFELLKEVGK--TKKPILLKRGMSATLEEWLYAAE  155 (266)
T ss_pred             HHHHHHHHHHcCCCEEEeeCChhhHHH-HHHh-CCEEEECcccccCHHHHHHHhc--CCCcEEEeCCCCCCHHHHHHHHH
Confidence            356677888999982  3332  3444 4444 8999999999999999999988  89999999999999999999998


Q ss_pred             HHHhCCCeEEEEeec-----cccCHHHHHHHHHH
Q 017143          122 AARKRPDILVQVGLE-----YRYMPPVAKLIQIV  150 (376)
Q Consensus       122 ~a~~~~~~~~~v~~~-----~r~~p~~~~~k~~i  150 (376)
                      .....++-.+.+.+.     ..|.+....++.+.
T Consensus       156 ~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~  189 (266)
T PRK13398        156 YIMSEGNENVVLCERGIRTFETYTRNTLDLAAVA  189 (266)
T ss_pred             HHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHH
Confidence            886555544444442     24554444444443

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=95.32  E-value=0.068  Score=51.27  Aligned_cols=93  Identities=19%  Similarity=0.154  Sum_probs=57.7

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC-
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP-   83 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~-   83 (376)
                      ...||+|+|+|..|...+..|.+.   +.+++ ++|.++.......+....-+++ ....+... +.-..+|+|++.-. 
T Consensus         6 ~~~kv~V~GLG~sG~a~a~~L~~~---G~~v~-v~D~~~~~~~~~~~~~~~~~i~-~~~g~~~~-~~~~~~d~vV~SPGi   79 (448)
T COG0771           6 QGKKVLVLGLGKSGLAAARFLLKL---GAEVT-VSDDRPAPEGLAAQPLLLEGIE-VELGSHDD-EDLAEFDLVVKSPGI   79 (448)
T ss_pred             cCCEEEEEecccccHHHHHHHHHC---CCeEE-EEcCCCCccchhhhhhhccCce-eecCccch-hccccCCEEEECCCC
Confidence            368999999999999888888875   77766 5776665421112222233554 11222222 22223787776544 


Q ss_pred             CCccHHHHHHHHcCCCCCeEEEe
Q 017143           84 NMTHYQILMDIINHPKPHHVLVE  106 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~E  106 (376)
                      +..| +++.+|.+  +|.+|+.|
T Consensus        80 ~~~~-p~v~~A~~--~gi~i~~d   99 (448)
T COG0771          80 PPTH-PLVEAAKA--AGIEIIGD   99 (448)
T ss_pred             CCCC-HHHHHHHH--cCCcEEeH
Confidence            4455 48888889  88999865

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.31  E-value=0.097  Score=49.65  Aligned_cols=34  Identities=26%  Similarity=0.389  Sum_probs=28.7

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPH   42 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~   42 (376)
                      .-||.|||+|..|...+..|...   ++.-+.++|.|
T Consensus       135 ~~~VlvvG~GG~Gs~ia~~La~~---Gvg~i~lvD~d  168 (376)
T PRK08762        135 EARVLLIGAGGLGSPAALYLAAA---GVGTLGIVDHD  168 (376)
T ss_pred             cCcEEEECCCHHHHHHHHHHHHc---CCCeEEEEeCC
Confidence            46899999999999999888886   67666688887

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=95.29  E-value=0.31  Score=45.97  Aligned_cols=132  Identities=14%  Similarity=0.226  Sum_probs=75.0

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc--CCHHHHhhC-CCCCEEEEeCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF--PGHQELLDS-GLCDVVVVSTP   83 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~-~~~D~V~i~t~   83 (376)
                      -+|.|.|+|.+|...+...+..   +.+++++... ++   +..++++++|.+ .++  .+.+++.+. ..+|+|+-++.
T Consensus       185 ~~VlV~G~G~vG~~avq~Ak~~---Ga~vi~~~~~-~~---~~~~~~~~~Ga~-~vi~~~~~~~~~~~~~~~D~vid~~g  256 (360)
T PLN02586        185 KHLGVAGLGGLGHVAVKIGKAF---GLKVTVISSS-SN---KEDEAINRLGAD-SFLVSTDPEKMKAAIGTMDYIIDTVS  256 (360)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC---CCEEEEEeCC-cc---hhhhHHHhCCCc-EEEcCCCHHHHHhhcCCCCEEEECCC
Confidence            3789999999999877666654   6777765443 33   233455567764 222  222222111 24899999887


Q ss_pred             CCccHHHHHHHHcCCCCCeEEE---ecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCC
Q 017143           84 NMTHYQILMDIINHPKPHHVLV---EKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIG  156 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~---EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG  156 (376)
                      .......+.++++.+ |+-|.+   ++|...+.      .... .+ +..+ .+....-...+..+-+++++|+|-
T Consensus       257 ~~~~~~~~~~~l~~~-G~iv~vG~~~~~~~~~~------~~~~-~~-~~~i-~g~~~~~~~~~~~~~~li~~g~i~  322 (360)
T PLN02586        257 AVHALGPLLGLLKVN-GKLITLGLPEKPLELPI------FPLV-LG-RKLV-GGSDIGGIKETQEMLDFCAKHNIT  322 (360)
T ss_pred             CHHHHHHHHHHhcCC-cEEEEeCCCCCCCccCH------HHHH-hC-CeEE-EEcCcCCHHHHHHHHHHHHhCCCC
Confidence            655566788888753 665655   33433332      2223 22 3222 232211123567777888888775

>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase

Probab=95.28  E-value=0.16  Score=44.56  Aligned_cols=87  Identities=15%  Similarity=0.164  Sum_probs=66.4

Q ss_pred             hhhHHHHHHHHHhcCCCC--Ccc--CCHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHH
Q 017143           43 LQSRQQALKLANAFDWPL--KVF--PGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKK  118 (376)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~--~~~--~~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~  118 (376)
                      ++-++..++..+++|+|+  .+.  .+.+.+.+.  +|++=|.+.+...+++++++-+  .||+|++=|+++.+++|..-
T Consensus        59 eeGL~iL~~vk~~~glpvvTeV~~~~~~~~vae~--vDilQIgArn~rn~~LL~a~g~--t~kpV~lKrG~~~t~~e~l~  134 (258)
T TIGR01362        59 EEGLKILQKVKEEFGVPILTDVHESSQCEPVAEV--VDIIQIPAFLCRQTDLLVAAAK--TGRIVNVKKGQFLSPWDMKN  134 (258)
T ss_pred             HHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhh--CcEEEeCchhcchHHHHHHHhc--cCCeEEecCCCcCCHHHHHH
Confidence            345567788888999982  222  234444444  9999999999999999999999  89999999999999999877


Q ss_pred             HHHHHHhCCCeEEEE
Q 017143          119 VVDAARKRPDILVQV  133 (376)
Q Consensus       119 l~~~a~~~~~~~~~v  133 (376)
                      .++.....++-.++.
T Consensus       135 aaeyi~~~Gn~~viL  149 (258)
T TIGR01362       135 VVEKVLSTGNKNILL  149 (258)
T ss_pred             HHHHHHHcCCCcEEE
Confidence            777765554444444

In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.

>TIGR00936 ahcY adenosylhomocysteinase

Probab=95.28  E-value=0.13  Score=48.95  Aligned_cols=78  Identities=17%  Similarity=0.187  Sum_probs=51.5

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      --+|+|+|+|.+|+..+..++..   +.+++ |+|+++.+   +. .+...|+.  . .+.++++..  .|+|+.+|.+.
T Consensus       195 Gk~VvViG~G~IG~~vA~~ak~~---Ga~Vi-V~d~dp~r---~~-~A~~~G~~--v-~~leeal~~--aDVVItaTG~~  261 (406)
T TIGR00936       195 GKTVVVAGYGWCGKGIAMRARGM---GARVI-VTEVDPIR---AL-EAAMDGFR--V-MTMEEAAKI--GDIFITATGNK  261 (406)
T ss_pred             cCEEEEECCCHHHHHHHHHHhhC---cCEEE-EEeCChhh---HH-HHHhcCCE--e-CCHHHHHhc--CCEEEECCCCH
Confidence            35899999999999998888876   77855 68888863   22 22334643  3 356777765  79998887643


Q ss_pred             ccHH-HHHHHHc
Q 017143           86 THYQ-ILMDIIN   96 (376)
Q Consensus        86 ~h~~-~~~~al~   96 (376)
                      .=.. .....++
T Consensus       262 ~vI~~~~~~~mK  273 (406)
T TIGR00936       262 DVIRGEHFENMK  273 (406)
T ss_pred             HHHHHHHHhcCC
Confidence            2222 2344556

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK06487 glycerate dehydrogenase; Provisional

Probab=95.25  E-value=0.056  Score=49.91  Aligned_cols=60  Identities=18%  Similarity=0.176  Sum_probs=45.7

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      .++||||+|.+|+...+.++..   +.++++ +++....          ...   .+.+++++|+.  .|+|++++|-.
T Consensus       149 ktvgIiG~G~IG~~vA~~l~~f---gm~V~~-~~~~~~~----------~~~---~~~~l~ell~~--sDiv~l~lPlt  208 (317)
T PRK06487        149 KTLGLLGHGELGGAVARLAEAF---GMRVLI-GQLPGRP----------ARP---DRLPLDELLPQ--VDALTLHCPLT  208 (317)
T ss_pred             CEEEEECCCHHHHHHHHHHhhC---CCEEEE-ECCCCCc----------ccc---cccCHHHHHHh--CCEEEECCCCC
Confidence            5899999999999988888776   888876 5654320          011   24589999988  79999999953

>PRK12853 glucose-6-phosphate 1-dehydrogenase; Provisional

Probab=95.24  E-value=0.26  Score=47.87  Aligned_cols=122  Identities=15%  Similarity=0.212  Sum_probs=70.4

Q ss_pred             CCCceeEEEEeC-ChhhH-HHHHHhhhhc-----CCCcEEEEEeCCChhhH---HH-----------------HHHHHHh
Q 017143            3 ANDTVKYGIIGM-GMMGR-EHFINLHHLR-----SQGVSVVCIADPHLQSR---QQ-----------------ALKLANA   55 (376)
Q Consensus         3 ~~~~~~v~iiG~-G~~g~-~~~~~~~~~~-----~~~~~~~~v~d~~~~~~---~~-----------------~~~~~~~   55 (376)
                      +..+..+.|.|+ |-.++ ..+|+|.++-     ++++.|+|+.-.+-...   +.                 .++|.+.
T Consensus         5 ~~~~~~~vIfGAtGDLA~RkL~PaL~~L~~~~~lp~~~~IiG~aR~~~~~e~fr~~v~~~l~~~~~~~~~~~~~~~F~~~   84 (482)
T PRK12853          5 PAPPCTLVIFGATGDLARRKLLPALYRLARAGLLPEDLRIIGVGRDDWSDEQWRARVRESLRAFGADGFDDAVWDRLAAR   84 (482)
T ss_pred             CCCCeEEEEeCCccHHHHhhHHHHHHHHHHcCCCCCCCEEEEEeCCcCCHHHHHHHHHHHHHhhccCccCHHHHHHHHhc
Confidence            334677888885 66665 5777776652     35799999764332211   00                 1122221


Q ss_pred             cCCCCCccC---CHHHH---hhCCCCCEEEEeCCCCccHHHHHHHHcCC---CCCeEEEecCCCCCHHHHHHHHHHHH
Q 017143           56 FDWPLKVFP---GHQEL---LDSGLCDVVVVSTPNMTHYQILMDIINHP---KPHHVLVEKPLCTTVADCKKVVDAAR  124 (376)
Q Consensus        56 ~~~~~~~~~---~~~~~---l~~~~~D~V~i~t~~~~h~~~~~~al~~~---~g~~Vl~EKP~a~~~~e~~~l~~~a~  124 (376)
                      ...-..-|+   +|++|   +..+.--+.++++||..=..++...-+.+   ...-|.+|||++.+++.|++|-+...
T Consensus        85 ~~Y~~~d~~~~~~~~~L~~~l~~~~~~lfYLA~PP~~f~~i~~~L~~~~l~~~~~RiviEKPFG~Dl~SA~~Ln~~l~  162 (482)
T PRK12853         85 LSYVQGDVTDPADYARLAEALGPGGNPVFYLAVPPSLFAPVVENLGAAGLLPEGRRVVLEKPFGHDLASARALNATLA  162 (482)
T ss_pred             CEEEecCCCCHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            100000122   23333   43222348899999887655554433311   13479999999999999999987773

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=95.22  E-value=0.089  Score=48.30  Aligned_cols=71  Identities=17%  Similarity=0.183  Sum_probs=45.5

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHH--HH---hcCCC--CCccCCHHHHhhCCCCCEEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKL--AN---AFDWP--LKVFPGHQELLDSGLCDVVV   79 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~--~~---~~~~~--~~~~~~~~~~l~~~~~D~V~   79 (376)
                      +||+|||+|.+|...+..++..  ...+ +.++|+.++. .+++.+  ..   .....  ++.++++++ +++  .|+|+
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~--g~~~-VvlvDi~~~l-~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~--aDiVI   74 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEK--ELAD-LVLLDVVEGI-PQGKALDMYEASPVGGFDTKVTGTNNYAD-TAN--SDIVV   74 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHc--CCCe-EEEEeCCCCh-hHHHHHhhhhhhhccCCCcEEEecCCHHH-hCC--CCEEE
Confidence            5899999999999888777765  2236 5578886653 222221  11   11111  234578887 444  89999


Q ss_pred             EeCCC
Q 017143           80 VSTPN   84 (376)
Q Consensus        80 i~t~~   84 (376)
                      |+.+.
T Consensus        75 itag~   79 (305)
T TIGR01763        75 ITAGL   79 (305)
T ss_pred             EcCCC
Confidence            99884

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed

Probab=95.16  E-value=0.065  Score=49.31  Aligned_cols=76  Identities=17%  Similarity=0.114  Sum_probs=53.5

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhh--------HHHHHHHHHhcCCCCCccCC-----HHHHhhCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQS--------RQQALKLANAFDWPLKVFPG-----HQELLDSG   73 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~--------~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~   73 (376)
                      |||.++|++.++...+..|.+.   ++++++|+...+.+        ....+++|++.|+|+....+     +.+.+.+.
T Consensus         1 mkIvf~G~~~~a~~~L~~L~~~---~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip~~~~~~~~~~~~~~~l~~~   77 (309)
T PRK00005          1 MRIVFMGTPEFAVPSLKALLES---GHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVLQPEKLRDPEFLAELAAL   77 (309)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC---CCcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCCEECcCCCCCHHHHHHHHhc
Confidence            5899999999999888888764   78999998643321        12357888999998322222     23456666


Q ss_pred             CCCEEEEeCCCC
Q 017143           74 LCDVVVVSTPNM   85 (376)
Q Consensus        74 ~~D~V~i~t~~~   85 (376)
                      ++|+++++.-..
T Consensus        78 ~~Dliv~~~~~~   89 (309)
T PRK00005         78 NADVIVVVAYGQ   89 (309)
T ss_pred             CcCEEEEehhhc
Confidence            799998877543

>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional

Probab=95.14  E-value=0.2  Score=44.16  Aligned_cols=87  Identities=16%  Similarity=0.171  Sum_probs=67.1

Q ss_pred             hhhHHHHHHHHHhcCCCC--CccC--CHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHH
Q 017143           43 LQSRQQALKLANAFDWPL--KVFP--GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKK  118 (376)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~--~~~~--~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~  118 (376)
                      ++-++..++..+++|+|+  .+.+  +.+.+.+.  +|++=|.+.+...+++++++-+  .||+|++=|+++.+++|..-
T Consensus        67 eeGL~~L~~vk~~~GlpvvTeV~~~~~~~~v~~~--~DilQIgArn~rn~~LL~a~g~--t~kpV~lKrG~~~t~~e~~~  142 (264)
T PRK05198         67 EEGLKILQEVKETFGVPVLTDVHEPEQAAPVAEV--VDVLQIPAFLCRQTDLLVAAAK--TGKVVNIKKGQFLAPWDMKN  142 (264)
T ss_pred             HHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhh--CcEEEECchhcchHHHHHHHhc--cCCeEEecCCCcCCHHHHHH
Confidence            345567778888999982  2222  34444444  9999999999999999999999  89999999999999999888


Q ss_pred             HHHHHHhCCCeEEEE
Q 017143          119 VVDAARKRPDILVQV  133 (376)
Q Consensus       119 l~~~a~~~~~~~~~v  133 (376)
                      ..+.....++-.++.
T Consensus       143 aaeyi~~~Gn~~vil  157 (264)
T PRK05198        143 VVDKVREAGNDKIIL  157 (264)
T ss_pred             HHHHHHHcCCCeEEE
Confidence            888876555444443

>COG0364 Zwf Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]

Probab=95.14  E-value=0.32  Score=46.49  Aligned_cols=120  Identities=17%  Similarity=0.255  Sum_probs=74.9

Q ss_pred             CceeEEEEeC-ChhhH-HHHHHhhhhc-----CCCcEEEEEeCCChhhH--------------------HHHHHHHHhcC
Q 017143            5 DTVKYGIIGM-GMMGR-EHFINLHHLR-----SQGVSVVCIADPHLQSR--------------------QQALKLANAFD   57 (376)
Q Consensus         5 ~~~~v~iiG~-G~~g~-~~~~~~~~~~-----~~~~~~~~v~d~~~~~~--------------------~~~~~~~~~~~   57 (376)
                      .+..+.|.|+ |-.++ ..+|+|-++.     .+++.|+|+.-..-+..                    +..++|++++-
T Consensus         6 ~~~~lvIFGatGDLA~RKL~PALy~L~~~g~l~~~~~IiG~aR~~~s~e~f~~~~~~~i~~~~~~~~~~~~~~~F~~~~~   85 (483)
T COG0364           6 EPFDLVIFGATGDLARRKLFPALYRLYKEGLLPEDFRIIGVARSKWSNEEFRALVREAIEFAKTEEIDEAVWEEFASRLS   85 (483)
T ss_pred             CcceEEEEcccchhhhhhHHHHHHHHHHcCCCCCCceEEEEecCcCChHHHHHHHHHHhhhcccccccHHHHHHHHhceE
Confidence            4578888985 77775 5788876652     36888998763321111                    01233443321


Q ss_pred             -----CC-CCccCCHHHHhhCCC-CCEEEEeCCCCccHHHHHHHHcCC---CCCeEEEecCCCCCHHHHHHHHHHHH
Q 017143           58 -----WP-LKVFPGHQELLDSGL-CDVVVVSTPNMTHYQILMDIINHP---KPHHVLVEKPLCTTVADCKKVVDAAR  124 (376)
Q Consensus        58 -----~~-~~~~~~~~~~l~~~~-~D~V~i~t~~~~h~~~~~~al~~~---~g~~Vl~EKP~a~~~~e~~~l~~~a~  124 (376)
                           +. ...|..+.+++...+ .-+.++++||+.-..++...-++|   .+.-|.+|||+..+++.|++|-+...
T Consensus        86 Y~~~d~~~~~~~~~L~~~l~~~~~~~vfYLa~pP~~f~~i~~~L~~~~l~~~~~RlviEKPfG~dL~SA~~Ln~~i~  162 (483)
T COG0364          86 YVSGDYDDPESFDELKDLLGELEGNRVFYLAVPPSLFGTIAENLAKAGLNEGNGRLVIEKPFGHDLASARELNDQIS  162 (483)
T ss_pred             EEecCCCCHHHHHHHHHHHhcccCceEEEEecChHHHHHHHHHHHHccCCCCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence                 11 122334455555422 448999999998777766553322   12269999999999999999999773

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.13  E-value=0.12  Score=48.28  Aligned_cols=36  Identities=31%  Similarity=0.347  Sum_probs=29.5

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL   43 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~   43 (376)
                      +.-||.|||+|.+|...+..|...   ++.-+.++|.|.
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~a---Gvg~i~lvD~D~   58 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRA---GVGKVTIVDRDY   58 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHc---CCCeEEEEeCCc
Confidence            357899999999999988888875   775566888874

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=95.11  E-value=0.097  Score=47.69  Aligned_cols=76  Identities=16%  Similarity=0.099  Sum_probs=47.2

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc----C-CCCCc--cCC---HHHHhhCCCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF----D-WPLKV--FPG---HQELLDSGLCD   76 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~----~-~~~~~--~~~---~~~~l~~~~~D   76 (376)
                      -++.|+|+|.+|+..+..+...   +++-+.|++|+.+..++++++++++    + ..+..  .++   ++++++  ..|
T Consensus       127 k~vlI~GAGGagrAia~~La~~---G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~--~~D  201 (289)
T PRK12548        127 KKLTVIGAGGAATAIQVQCALD---GAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIA--SSD  201 (289)
T ss_pred             CEEEEECCcHHHHHHHHHHHHC---CCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhc--cCC
Confidence            4789999999999877777765   6665667889863222455554433    1 11011  122   223333  379


Q ss_pred             EEEEeCCCCcc
Q 017143           77 VVVVSTPNMTH   87 (376)
Q Consensus        77 ~V~i~t~~~~h   87 (376)
                      +|+.+||...+
T Consensus       202 ilINaTp~Gm~  212 (289)
T PRK12548        202 ILVNATLVGMK  212 (289)
T ss_pred             EEEEeCCCCCC
Confidence            99999997665

>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=95.10  E-value=0.24  Score=45.96  Aligned_cols=80  Identities=14%  Similarity=0.215  Sum_probs=62.8

Q ss_pred             hHHHHHHHHHhcCCCC--CccC--CHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHH
Q 017143           45 SRQQALKLANAFDWPL--KVFP--GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVV  120 (376)
Q Consensus        45 ~~~~~~~~~~~~~~~~--~~~~--~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~  120 (376)
                      .++..++.++++|+++  ..++  +.+. +.+. +|++-|.+.+-.+++++.++-+  .||+|++.++++.+.+|...-+
T Consensus       153 gl~~L~~~~~e~Gl~~~tev~d~~~v~~-~~~~-~d~lqIga~~~~n~~LL~~va~--t~kPVllk~G~~~t~ee~~~A~  228 (352)
T PRK13396        153 ALELLAAAREATGLGIITEVMDAADLEK-IAEV-ADVIQVGARNMQNFSLLKKVGA--QDKPVLLKRGMAATIDEWLMAA  228 (352)
T ss_pred             HHHHHHHHHHHcCCcEEEeeCCHHHHHH-HHhh-CCeEEECcccccCHHHHHHHHc--cCCeEEEeCCCCCCHHHHHHHH
Confidence            3455667778899982  3333  3444 4444 8999999999999999999999  8999999999999999998888


Q ss_pred             HHHHhCCC
Q 017143          121 DAARKRPD  128 (376)
Q Consensus       121 ~~a~~~~~  128 (376)
                      +.....++
T Consensus       229 e~i~~~Gn  236 (352)
T PRK13396        229 EYILAAGN  236 (352)
T ss_pred             HHHHHcCC
Confidence            88855544

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=95.06  E-value=0.16  Score=47.92  Aligned_cols=36  Identities=22%  Similarity=0.378  Sum_probs=29.1

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL   43 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~   43 (376)
                      +.-||.|||+|..|...+..|...   ++.-+.++|.|.
T Consensus        40 ~~~~VliiG~GglG~~v~~~La~~---Gvg~i~ivD~D~   75 (370)
T PRK05600         40 HNARVLVIGAGGLGCPAMQSLASA---GVGTITLIDDDT   75 (370)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHc---CCCEEEEEeCCE
Confidence            356999999999999999988886   665566788763

>COG1832 Predicted CoA-binding protein [General function prediction only]

Probab=95.06  E-value=0.4  Score=37.70  Aligned_cols=100  Identities=13%  Similarity=0.163  Sum_probs=69.8

Q ss_pred             eeEEEEeCChh---hHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143            7 VKYGIIGMGMM---GREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         7 ~~v~iiG~G~~---g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      -+||+||+..-   -...+..+...  .|++++=| .+.-.    .++   -+|.+  +|.|+.++-+.  +|+|.|.-+
T Consensus        17 K~IAvVG~S~~P~r~sy~V~kyL~~--~GY~ViPV-NP~~~----~~e---iLG~k--~y~sL~dIpe~--IDiVdvFR~   82 (140)
T COG1832          17 KTIAVVGASDKPDRPSYRVAKYLQQ--KGYRVIPV-NPKLA----GEE---ILGEK--VYPSLADIPEP--IDIVDVFRR   82 (140)
T ss_pred             ceEEEEecCCCCCccHHHHHHHHHH--CCCEEEee-Ccccc----hHH---hcCch--hhhcHHhCCCC--CcEEEEecC
Confidence            57999998652   12233333333  58897754 33111    122   34654  99999999854  999999999


Q ss_pred             CCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHH
Q 017143           84 NMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAA  123 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a  123 (376)
                      +..-.+++.+|++  .|-.|++=-+...+.+ +.+..+.+
T Consensus        83 ~e~~~~i~~eal~--~~~kv~W~QlGi~n~e-a~~~~~~a  119 (140)
T COG1832          83 SEAAPEVAREALE--KGAKVVWLQLGIRNEE-AAEKARDA  119 (140)
T ss_pred             hhhhHHHHHHHHh--hCCCeEEEecCcCCHH-HHHHHHHh
Confidence            9999999999999  7788888888777766 55555554

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.01  E-value=0.12  Score=50.15  Aligned_cols=92  Identities=22%  Similarity=0.179  Sum_probs=57.0

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHH-HHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQ-ALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      -++.|+|.|.+|...+..|++.   +.+|+ ++|.+...... .+++ +..|+.+....+..+++.. .+|+|+++..-.
T Consensus         6 k~v~v~G~g~~G~s~a~~l~~~---G~~V~-~~d~~~~~~~~~~~~l-~~~g~~~~~~~~~~~~~~~-~~d~vV~s~gi~   79 (447)
T PRK02472          6 KKVLVLGLAKSGYAAAKLLHKL---GANVT-VNDGKPFSENPEAQEL-LEEGIKVICGSHPLELLDE-DFDLMVKNPGIP   79 (447)
T ss_pred             CEEEEEeeCHHHHHHHHHHHHC---CCEEE-EEcCCCccchhHHHHH-HhcCCEEEeCCCCHHHhcC-cCCEEEECCCCC
Confidence            4799999999998877777764   78866 46766532212 2333 3446541111233444432 389776655434


Q ss_pred             ccHHHHHHHHcCCCCCeEEEe
Q 017143           86 THYQILMDIINHPKPHHVLVE  106 (376)
Q Consensus        86 ~h~~~~~~al~~~~g~~Vl~E  106 (376)
                      ...+...+|.+  +|++|+.|
T Consensus        80 ~~~~~~~~a~~--~~i~v~~~   98 (447)
T PRK02472         80 YTNPMVEKALE--KGIPIITE   98 (447)
T ss_pred             CCCHHHHHHHH--CCCcEEeH
Confidence            44477888888  88998864

>PRK08328 hypothetical protein; Provisional

Probab=95.00  E-value=0.18  Score=44.25  Aligned_cols=36  Identities=22%  Similarity=0.369  Sum_probs=30.0

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChh
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQ   44 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~   44 (376)
                      .-||.|||+|..|...+..|...   ++.-+.++|.|.-
T Consensus        27 ~~~VlIiG~GGlGs~ia~~La~~---Gvg~i~lvD~D~v   62 (231)
T PRK08328         27 KAKVAVVGVGGLGSPVAYYLAAA---GVGRILLIDEQTP   62 (231)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHc---CCCEEEEEcCCcc
Confidence            46899999999999999888886   6666778888765

>PTZ00117 malate dehydrogenase; Provisional

Probab=94.99  E-value=0.1  Score=48.22  Aligned_cols=71  Identities=18%  Similarity=0.138  Sum_probs=45.6

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHH----H-HhcCCC--CCccCCHHHHhhCCCCCE
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKL----A-NAFDWP--LKVFPGHQELLDSGLCDV   77 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~----~-~~~~~~--~~~~~~~~~~l~~~~~D~   77 (376)
                      +..||+|||+|.+|......+...  .-.+ +.++|++++..+ +..+    + ...+..  +..+++++ .+.+  .|+
T Consensus         4 ~~~KI~IIGaG~vG~~ia~~l~~~--~~~~-l~L~Di~~~~~~-g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~--ADi   76 (319)
T PTZ00117          4 KRKKISMIGAGQIGSTVALLILQK--NLGD-VVLYDVIKGVPQ-GKALDLKHFSTLVGSNINILGTNNYE-DIKD--SDV   76 (319)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHC--CCCe-EEEEECCCccch-hHHHHHhhhccccCCCeEEEeCCCHH-HhCC--CCE
Confidence            467999999999999866655554  2246 678999886432 2222    1 112222  23357888 4454  899


Q ss_pred             EEEeC
Q 017143           78 VVVST   82 (376)
Q Consensus        78 V~i~t   82 (376)
                      |+++.
T Consensus        77 VVita   81 (319)
T PTZ00117         77 VVITA   81 (319)
T ss_pred             EEECC
Confidence            99998

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=94.96  E-value=0.63  Score=42.95  Aligned_cols=88  Identities=15%  Similarity=0.154  Sum_probs=56.5

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      =++.|.|+|.+|...+..++.   .+++++++.+. +++   . ++++++|.+ ..++ .++. ....+|.++.+++...
T Consensus       169 ~~vlV~g~g~vg~~~~~la~~---~g~~v~~~~~~-~~~---~-~~~~~~g~~-~~~~-~~~~-~~~~vD~vi~~~~~~~  237 (329)
T cd08298         169 QRLGLYGFGASAHLALQIARY---QGAEVFAFTRS-GEH---Q-ELARELGAD-WAGD-SDDL-PPEPLDAAIIFAPVGA  237 (329)
T ss_pred             CEEEEECCcHHHHHHHHHHHH---CCCeEEEEcCC-hHH---H-HHHHHhCCc-EEec-cCcc-CCCcccEEEEcCCcHH
Confidence            378889999999876665444   47888766544 342   2 333566754 2222 2222 2235899999888777


Q ss_pred             cHHHHHHHHcCCCCCeEEEe
Q 017143           87 HYQILMDIINHPKPHHVLVE  106 (376)
Q Consensus        87 h~~~~~~al~~~~g~~Vl~E  106 (376)
                      +.+.+.++++.+ |+-|++.
T Consensus       238 ~~~~~~~~l~~~-G~~v~~g  256 (329)
T cd08298         238 LVPAALRAVKKG-GRVVLAG  256 (329)
T ss_pred             HHHHHHHHhhcC-CEEEEEc
Confidence            889899999753 6666654

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.94  E-value=0.12  Score=50.89  Aligned_cols=90  Identities=19%  Similarity=0.132  Sum_probs=57.1

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh-hhHHHHHHHHHhcCCCCCcc-CCHHHHhhCCCCCEEEEeCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL-QSRQQALKLANAFDWPLKVF-PGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~D~V~i~t~   83 (376)
                      .-+|.|||.|.+|...+..|++.   +.+++ ++|.++ +......+..++.|+.  .+ .+..+..  .++|+|++++-
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~---G~~V~-~~d~~~~~~~~~~~~~l~~~gv~--~~~~~~~~~~--~~~D~Vv~s~G   87 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLEL---GARVT-VVDDGDDERHRALAAILEALGAT--VRLGPGPTLP--EDTDLVVTSPG   87 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC---CCEEE-EEeCCchhhhHHHHHHHHHcCCE--EEECCCcccc--CCCCEEEECCC
Confidence            35899999999999877777664   77866 466443 2222222333456765  32 2211222  34899999887


Q ss_pred             CCccHHHHHHHHcCCCCCeEEE
Q 017143           84 NMTHYQILMDIINHPKPHHVLV  105 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~  105 (376)
                      -....+.+..|.+  +|.+|+-
T Consensus        88 i~~~~~~~~~a~~--~gi~v~~  107 (480)
T PRK01438         88 WRPDAPLLAAAAD--AGIPVWG  107 (480)
T ss_pred             cCCCCHHHHHHHH--CCCeecc
Confidence            6555577788888  7888853

>PLN02285 methionyl-tRNA formyltransferase

Probab=94.93  E-value=0.069  Score=49.60  Aligned_cols=81  Identities=12%  Similarity=0.126  Sum_probs=54.4

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhh---cCCCcEEEEEeCCChhhHH--------HHHHHHHhcCCCCC-cc--C-----
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHL---RSQGVSVVCIADPHLQSRQ--------QALKLANAFDWPLK-VF--P-----   64 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~---~~~~~~~~~v~d~~~~~~~--------~~~~~~~~~~~~~~-~~--~-----   64 (376)
                      .+++||.++|++.++...+.+|...   .+.++++++|+...+....        ..+++|.+.|+|.. ++  .     
T Consensus         4 ~~~~kI~f~Gt~~fa~~~L~~L~~~~~~~~~~~~iv~Vvt~~~~~~gr~~~~~~~pv~~~A~~~gIp~~~v~~~~~~~~~   83 (334)
T PLN02285          4 GRKKRLVFLGTPEVAATVLDALLDASQAPDSAFEVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFPPDLIFTPEKAGEE   83 (334)
T ss_pred             CCccEEEEEECCHHHHHHHHHHHhhhhccCCCCeEEEEEeCCCCcccCCcccCCCHHHHHHHHcCCCcceecCccccCCH
Confidence            4689999999999998887777553   1136899998866544211        25678889999821 11  1     


Q ss_pred             CHHHHhhCCCCCEEEEeCCC
Q 017143           65 GHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus        65 ~~~~~l~~~~~D~V~i~t~~   84 (376)
                      ...+.+.+..+|+++++.-.
T Consensus        84 ~~~~~l~~~~~Dliv~~~~~  103 (334)
T PLN02285         84 DFLSALRELQPDLCITAAYG  103 (334)
T ss_pred             HHHHHHHhhCCCEEEhhHhh
Confidence            12334555679998888643

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=94.93  E-value=0.65  Score=43.35  Aligned_cols=126  Identities=11%  Similarity=0.098  Sum_probs=70.3

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC--
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN--   84 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~--   84 (376)
                      =+|.|+|+|.+|...+..+++.. ...+++ ++++++++++.++    +.+..   + ..+++.++..+|+|+-++..  
T Consensus       165 ~~VlV~G~G~vGl~~~~~a~~~~-g~~~vi-~~~~~~~k~~~a~----~~~~~---~-~~~~~~~~~g~d~viD~~G~~~  234 (341)
T cd08237         165 NVIGVWGDGNLGYITALLLKQIY-PESKLV-VFGKHQEKLDLFS----FADET---Y-LIDDIPEDLAVDHAFECVGGRG  234 (341)
T ss_pred             CEEEEECCCHHHHHHHHHHHHhc-CCCcEE-EEeCcHhHHHHHh----hcCce---e-ehhhhhhccCCcEEEECCCCCc
Confidence            37999999999998777666531 344555 4677777554433    33322   1 12233333358999999984  


Q ss_pred             -CccHHHHHHHHcCCCCCeEEEe---cCCCCCHHHHHHHHHHHHhCCCeEEEEeecccc-CHHHHHHHHHHHcC
Q 017143           85 -MTHYQILMDIINHPKPHHVLVE---KPLCTTVADCKKVVDAARKRPDILVQVGLEYRY-MPPVAKLIQIVKSG  153 (376)
Q Consensus        85 -~~h~~~~~~al~~~~g~~Vl~E---KP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~-~p~~~~~k~~i~~g  153 (376)
                       ......+.++++.+ |+-|++-   .|...+.      .... .+ ++.+.-..  ++ ...+..+.+++.+|
T Consensus       235 ~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~------~~~~-~k-~~~i~g~~--~~~~~~~~~~~~~~~~~  297 (341)
T cd08237         235 SQSAINQIIDYIRPQ-GTIGLMGVSEYPVPINT------RMVL-EK-GLTLVGSS--RSTREDFERAVELLSRN  297 (341)
T ss_pred             cHHHHHHHHHhCcCC-cEEEEEeecCCCcccCH------HHHh-hC-ceEEEEec--ccCHHHHHHHHHHHHhC
Confidence             33456677777743 6656553   2332222      1222 22 33333222  22 23567777888877

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=94.92  E-value=0.39  Score=45.37  Aligned_cols=138  Identities=12%  Similarity=0.124  Sum_probs=76.7

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC----CHHHHhh---CCCCCEEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP----GHQELLD---SGLCDVVV   79 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~---~~~~D~V~   79 (376)
                      =+|.|+|+|.+|...+...+..   +.+.+.+++.++++++    +++++|.. .+++    ++.+.+.   ...+|+|+
T Consensus       193 ~~VlV~G~G~vG~~a~~lak~~---G~~~Vi~~~~~~~r~~----~a~~~Ga~-~~i~~~~~~~~~~i~~~~~~g~d~vi  264 (371)
T cd08281         193 QSVAVVGLGGVGLSALLGAVAA---GASQVVAVDLNEDKLA----LARELGAT-ATVNAGDPNAVEQVRELTGGGVDYAF  264 (371)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc---CCCcEEEEcCCHHHHH----HHHHcCCc-eEeCCCchhHHHHHHHHhCCCCCEEE
Confidence            3799999999998766655543   6743334577776433    44566754 2222    2222222   12589999


Q ss_pred             EeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeecccc--CHHHHHHHHHHHcCCCC
Q 017143           80 VSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRY--MPPVAKLIQIVKSGSIG  156 (376)
Q Consensus        80 i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~--~p~~~~~k~~i~~g~iG  156 (376)
                      -++........+.++++. .|+-|++--+........ .+.... .+ ++.+.-.+...+  ...+..+.+++.+|++-
T Consensus       265 d~~G~~~~~~~~~~~l~~-~G~iv~~G~~~~~~~~~~-~~~~~~-~~-~~~i~g~~~~~~~~~~~~~~~~~l~~~g~i~  339 (371)
T cd08281         265 EMAGSVPALETAYEITRR-GGTTVTAGLPDPEARLSV-PALSLV-AE-ERTLKGSYMGSCVPRRDIPRYLALYLSGRLP  339 (371)
T ss_pred             ECCCChHHHHHHHHHHhc-CCEEEEEccCCCCceeee-cHHHHh-hc-CCEEEEEecCCCChHHHHHHHHHHHHcCCCC
Confidence            999877778888888874 366565532211100011 122333 22 334433322221  24566777888888774

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=94.91  E-value=0.4  Score=46.55  Aligned_cols=102  Identities=10%  Similarity=0.142  Sum_probs=70.9

Q ss_pred             hhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcC--CCCCccCCHHHHhhC-CCCCEEEEeCCCCccHHHHHH
Q 017143           17 MGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFD--WPLKVFPGHQELLDS-GLCDVVVVSTPNMTHYQILMD   93 (376)
Q Consensus        17 ~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~-~~~D~V~i~t~~~~h~~~~~~   93 (376)
                      ||......|.+.   +++|+ |+|++++   +++++.+..+  -.+..+.|++++.+. ..+|+|+++.|.....+-+..
T Consensus         1 MG~~mA~nL~~~---G~~V~-v~nrt~~---~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~   73 (459)
T PRK09287          1 MGKNLALNIASH---GYTVA-VYNRTPE---KTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIE   73 (459)
T ss_pred             CcHHHHHHHHhC---CCeEE-EECCCHH---HHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHH
Confidence            456667777764   88865 8999998   5666665422  013478899999985 348999999999887666643


Q ss_pred             ----HHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeE
Q 017143           94 ----IINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDIL  130 (376)
Q Consensus        94 ----al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~  130 (376)
                          .|+  .| .|+++-- ..+..+..++.+.++++ |+.
T Consensus        74 ~l~~~l~--~G-diiID~g-n~~~~~t~~~~~~l~~~-Gi~  109 (459)
T PRK09287         74 QLLPLLE--KG-DIIIDGG-NSNYKDTIRREKELAEK-GIH  109 (459)
T ss_pred             HHHhcCC--CC-CEEEECC-CCCHHHHHHHHHHHHhc-CCe
Confidence                234  34 5788763 45888888888888444 544

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=94.87  E-value=0.27  Score=39.53  Aligned_cols=33  Identities=27%  Similarity=0.461  Sum_probs=26.9

Q ss_pred             eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh
Q 017143            8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL   43 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~   43 (376)
                      ||.|||+|.+|...+..|...   ++.-+.++|.+.
T Consensus         1 ~VliiG~GglGs~ia~~L~~~---Gv~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARS---GVGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHC---CCCEEEEEcCCC
Confidence            689999999999999998886   665556777763

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional

Probab=94.86  E-value=0.11  Score=48.03  Aligned_cols=105  Identities=20%  Similarity=0.216  Sum_probs=66.5

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhc--CCCcEEEEEeCCC--hhhHHHHHHHHHhcCC----------------------
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLR--SQGVSVVCIADPH--LQSRQQALKLANAFDW----------------------   58 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~--~~~~~~~~v~d~~--~~~~~~~~~~~~~~~~----------------------   58 (376)
                      +++||||-|.|+||+..++++....  .++++++||-|+.  ++...-..+.=.-+|-                      
T Consensus         2 m~ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~i   81 (361)
T PTZ00434          2 APIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLVV   81 (361)
T ss_pred             CceEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcCCceeecccccccccCCEEEE
Confidence            4589999999999999888765421  2589999999853  3311100000000110                      


Q ss_pred             ---CCCcc---CCHHHHhhC-CCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCC
Q 017143           59 ---PLKVF---PGHQELLDS-GLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLC  110 (376)
Q Consensus        59 ---~~~~~---~~~~~~l~~-~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a  110 (376)
                         ++..+   .+.+++-.. ..+|+|+=||--....+-+..-|++| -|-|++--|..
T Consensus        82 ng~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~G-AKkViiSAP~~  139 (361)
T PTZ00434         82 NGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGG-AKKVVISAPAS  139 (361)
T ss_pred             CCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcC-CCEEEECCCCC
Confidence               01122   233443332 36999999999888888888888865 38899988854

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=94.86  E-value=0.16  Score=49.68  Aligned_cols=90  Identities=20%  Similarity=0.146  Sum_probs=58.2

Q ss_pred             CceeEEEEeCChhhHH-HHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc-CCHHHHhhCCCCCEEEEeC
Q 017143            5 DTVKYGIIGMGMMGRE-HFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF-PGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~-~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~D~V~i~t   82 (376)
                      +..+|.|||+|..|.. .+..|.+.   +.+|+ ++|.....  ...++ ++.|+.  .+ ....+.+.  ++|+|+++.
T Consensus         6 ~~~~v~viG~G~sG~s~~a~~L~~~---G~~V~-~~D~~~~~--~~~~l-~~~gi~--~~~~~~~~~~~--~~d~vv~sp   74 (461)
T PRK00421          6 RIKRIHFVGIGGIGMSGLAEVLLNL---GYKVS-GSDLKESA--VTQRL-LELGAI--IFIGHDAENIK--DADVVVYSS   74 (461)
T ss_pred             CCCEEEEEEEchhhHHHHHHHHHhC---CCeEE-EECCCCCh--HHHHH-HHCCCE--EeCCCCHHHCC--CCCEEEECC
Confidence            3468999999999988 46566664   88876 57876542  23344 345765  32 22234454  489877665


Q ss_pred             CCCccHHHHHHHHcCCCCCeEEEec
Q 017143           83 PNMTHYQILMDIINHPKPHHVLVEK  107 (376)
Q Consensus        83 ~~~~h~~~~~~al~~~~g~~Vl~EK  107 (376)
                      .-....+...+|.+  +|++|+-|.
T Consensus        75 gi~~~~~~~~~a~~--~~i~i~~~~   97 (461)
T PRK00421         75 AIPDDNPELVAARE--LGIPVVRRA   97 (461)
T ss_pred             CCCCCCHHHHHHHH--CCCcEEeHH
Confidence            54555567788888  888887653

>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B

Probab=94.85  E-value=0.19  Score=47.92  Aligned_cols=101  Identities=22%  Similarity=0.222  Sum_probs=63.9

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH------hcCCCCC---------------cc
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN------AFDWPLK---------------VF   63 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~------~~~~~~~---------------~~   63 (376)
                      +++||||-|.|+||+..++.+....+++++|++|=|....  +...-+-+      +|+-++.               ++
T Consensus        74 ~~ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~~~~--~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~V~  151 (442)
T PLN02237         74 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGV--KNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIKVV  151 (442)
T ss_pred             ceEEEEEECCChHHHHHHHHHHHccCCCeEEEEECCCCCH--HHHHHHHccccCCCCcCCceEECCCCEEEECCEEEEEE
Confidence            3599999999999998888765432268999999885432  22222222      1111110               11


Q ss_pred             C--CHHHHhh-CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecC
Q 017143           64 P--GHQELLD-SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKP  108 (376)
Q Consensus        64 ~--~~~~~l~-~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP  108 (376)
                      +  +.+++-. +.++|+|+-||......+.+..++++|+ |-|++--|
T Consensus       152 ~~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGA-kkV~iSAP  198 (442)
T PLN02237        152 SNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA-KKVIITAP  198 (442)
T ss_pred             EcCCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCC-EEEEECCC
Confidence            1  1112221 2469999999999999999999999553 55666555

>PLN02539 glucose-6-phosphate 1-dehydrogenase

Probab=94.83  E-value=0.34  Score=47.15  Aligned_cols=121  Identities=12%  Similarity=0.190  Sum_probs=70.8

Q ss_pred             CCceeEEEEeC-ChhhH-HHHHHhhhh------cCCCcEEEEEeCCChhhH---HHH---------------HHHHHhc-
Q 017143            4 NDTVKYGIIGM-GMMGR-EHFINLHHL------RSQGVSVVCIADPHLQSR---QQA---------------LKLANAF-   56 (376)
Q Consensus         4 ~~~~~v~iiG~-G~~g~-~~~~~~~~~------~~~~~~~~~v~d~~~~~~---~~~---------------~~~~~~~-   56 (376)
                      .++..+.|.|+ |-.++ ..+|+|.++      +.+++.|+|+.-.+-...   +..               .++.+.. 
T Consensus        15 ~~~~~~VIFGAtGDLa~RKL~PaL~~L~~~~~lpp~~~~IiG~aR~~~s~e~fr~~v~~~l~~~~~~~~~~~~~F~~~~~   94 (491)
T PLN02539         15 TGCLSIIVLGASGDLAKKKTFPALFNLYRQGFLPPDEVHIFGYARSKITDEELRDRIRGYLKDEKNAPAEAVSKFLQLIK   94 (491)
T ss_pred             CCCeEEEEeCCccHHHHhhHHHHHHHHHHcCCCCCCCcEEEEEECCCCCHHHHHHHHHHHHHhhccccHHHHHHHHhhCe
Confidence            34678899995 66665 578887766      235889999774322211   111               1111110 


Q ss_pred             ----CCC-CCccCCHHHHhhCC----------CCCEEEEeCCCCccHHHHHHHHcCC---CC--CeEEEecCCCCCHHHH
Q 017143           57 ----DWP-LKVFPGHQELLDSG----------LCDVVVVSTPNMTHYQILMDIINHP---KP--HHVLVEKPLCTTVADC  116 (376)
Q Consensus        57 ----~~~-~~~~~~~~~~l~~~----------~~D~V~i~t~~~~h~~~~~~al~~~---~g--~~Vl~EKP~a~~~~e~  116 (376)
                          ++. ...|..+.+.+++.          .--+.++++||..-..++...-+.|   .|  .-|.+|||++.+++.|
T Consensus        95 Y~~~d~~~~e~y~~L~~~l~~~~~~~~~~~~~~~rifYLA~PP~~f~~i~~~L~~~~l~~~g~~~RiviEKPFG~Dl~SA  174 (491)
T PLN02539         95 YVSGAYDSEEGFRRLDKEISEHEISKNSAEGSSRRLFYLALPPSVYPPVCKMIKKCCMNKSGLWTRIVVEKPFGKDLESA  174 (491)
T ss_pred             EEecCCCChHHHHHHHHHHHHHhhhccccCCCCceEEEEecChHHHHHHHHHHHHhcCCCCCCceEEEEECCCCCCHHHH
Confidence                010 01122233333320          1237899999987655555443321   12  4799999999999999


Q ss_pred             HHHHHHHH
Q 017143          117 KKVVDAAR  124 (376)
Q Consensus       117 ~~l~~~a~  124 (376)
                      ++|-+...
T Consensus       175 ~~Ln~~l~  182 (491)
T PLN02539        175 EELSSQIG  182 (491)
T ss_pred             HHHHHHHH
Confidence            99998773

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=94.83  E-value=0.14  Score=43.53  Aligned_cols=73  Identities=19%  Similarity=0.229  Sum_probs=47.4

Q ss_pred             ceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc----CCCCC--ccCCHH---HHhhCCCC
Q 017143            6 TVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF----DWPLK--VFPGHQ---ELLDSGLC   75 (376)
Q Consensus         6 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~----~~~~~--~~~~~~---~~l~~~~~   75 (376)
                      ..++.|+|. |.+|+..+..+...   +.+++ +++|+.+   +++++++++    +..+.  ...+.+   +++..  .
T Consensus        28 ~~~vlVlGgtG~iG~~~a~~l~~~---g~~V~-l~~R~~~---~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~   98 (194)
T cd01078          28 GKTAVVLGGTGPVGQRAAVLLARE---GARVV-LVGRDLE---RAQKAADSLRARFGEGVGAVETSDDAARAAAIKG--A   98 (194)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHC---CCEEE-EEcCCHH---HHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhc--C
Confidence            468999995 99999888887764   56665 5678876   455554432    33211  123343   45544  8


Q ss_pred             CEEEEeCCCCcc
Q 017143           76 DVVVVSTPNMTH   87 (376)
Q Consensus        76 D~V~i~t~~~~h   87 (376)
                      |+|+.+||....
T Consensus        99 diVi~at~~g~~  110 (194)
T cd01078          99 DVVFAAGAAGVE  110 (194)
T ss_pred             CEEEECCCCCce
Confidence            999999987665

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=94.82  E-value=0.12  Score=49.86  Aligned_cols=91  Identities=10%  Similarity=-0.025  Sum_probs=60.0

Q ss_pred             eeEEEEeCChh-hHHHHHHhhhhc-CCCcEEEEEeCCChhhHHHHHHHHHh----cCCC--CCccCCHHHHhhCCCCCEE
Q 017143            7 VKYGIIGMGMM-GREHFINLHHLR-SQGVSVVCIADPHLQSRQQALKLANA----FDWP--LKVFPGHQELLDSGLCDVV   78 (376)
Q Consensus         7 ~~v~iiG~G~~-g~~~~~~~~~~~-~~~~~~~~v~d~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~l~~~~~D~V   78 (376)
                      +||+|||.|+. +...+..+.+.. .-...-+.++|+|+++++...+++++    .|.+  +..++|.+++|..  .|.|
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~g--ADfV   78 (437)
T cd05298           1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTD--ADFV   78 (437)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCC--CCEE
Confidence            58999999984 334555554442 12333455899999988766665554    4544  5678999999987  8999


Q ss_pred             EEeCCCCcc--HHHHHH-HHcCCCCC
Q 017143           79 VVSTPNMTH--YQILMD-IINHPKPH  101 (376)
Q Consensus        79 ~i~t~~~~h--~~~~~~-al~~~~g~  101 (376)
                      +......-+  ...-.+ .++  .|.
T Consensus        79 i~~irvGg~~~r~~De~Ip~k--yGi  102 (437)
T cd05298          79 FAQIRVGGYAMREQDEKIPLK--HGV  102 (437)
T ss_pred             EEEeeeCCchHHHHHHhHHHH--cCc
Confidence            988776543  222222 477  664

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PRK09414 glutamate dehydrogenase; Provisional

Probab=94.81  E-value=0.43  Score=45.94  Aligned_cols=107  Identities=12%  Similarity=0.136  Sum_probs=69.5

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeC----------CChhhHHHHHHHHHhc--CCC--CC----ccCCH
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIAD----------PHLQSRQQALKLANAF--DWP--LK----VFPGH   66 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d----------~~~~~~~~~~~~~~~~--~~~--~~----~~~~~   66 (376)
                      +..||+|.|.|.+|...+..|...   +.+|++|+|          .|.+.   ..+..++.  .+.  ..    .+-+-
T Consensus       231 ~g~rVaIqGfGnVG~~~A~~L~~~---GakVVavsDs~G~iyn~~GLD~~~---L~~~k~~~~~~l~~~~~~~~~~~i~~  304 (445)
T PRK09414        231 EGKRVVVSGSGNVAIYAIEKAQQL---GAKVVTCSDSSGYVYDEEGIDLEK---LKEIKEVRRGRISEYAEEFGAEYLEG  304 (445)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEEcCCceEECCCCCCHHH---HHHHHHhcCCchhhhhhhcCCeecCC
Confidence            358999999999999888877765   899999999          66653   33332221  111  00    12244


Q ss_pred             HHHhhCCCCCEEEEeCCC-CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHH
Q 017143           67 QELLDSGLCDVVVVSTPN-MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVV  120 (376)
Q Consensus        67 ~~~l~~~~~D~V~i~t~~-~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~  120 (376)
                      ++++.. ++|+.+=|+.. .-+.+.+.+..+  .+..+++|--=.....++.+++
T Consensus       305 ~~i~~~-d~DVliPaAl~n~It~~~a~~i~~--~~akiIvEgAN~p~t~~A~~~L  356 (445)
T PRK09414        305 GSPWSV-PCDIALPCATQNELDEEDAKTLIA--NGVKAVAEGANMPSTPEAIEVF  356 (445)
T ss_pred             cccccc-CCcEEEecCCcCcCCHHHHHHHHH--cCCeEEEcCCCCCCCHHHHHHH
Confidence            555554 58988887764 577777777766  5667888864433344455544

>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]

Probab=94.81  E-value=0.1  Score=47.40  Aligned_cols=74  Identities=19%  Similarity=0.186  Sum_probs=56.2

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH--------HHHHHHHHhcCCCCCccCC-------HHHHh
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSR--------QQALKLANAFDWPLKVFPG-------HQELL   70 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~--------~~~~~~~~~~~~~~~~~~~-------~~~~l   70 (376)
                      ++||.+.|+-.++..++.+|...   ++++++|+..-+...        ...+++|.++|+|  +|+-       +.+.+
T Consensus         1 ~mkivF~GTp~fa~~~L~~L~~~---~~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ip--v~qP~~l~~~e~~~~l   75 (307)
T COG0223           1 MMRIVFFGTPEFAVPSLEALIEA---GHEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIP--VFQPEKLNDPEFLEEL   75 (307)
T ss_pred             CcEEEEEcCchhhHHHHHHHHhC---CCceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCc--eeccccCCcHHHHHHH
Confidence            48999999999999888888886   499999996544332        2357788899987  4432       66777


Q ss_pred             hCCCCCEEEEeCCC
Q 017143           71 DSGLCDVVVVSTPN   84 (376)
Q Consensus        71 ~~~~~D~V~i~t~~   84 (376)
                      ++.++|+++++.--
T Consensus        76 ~~l~~D~ivvvayG   89 (307)
T COG0223          76 AALDPDLIVVVAYG   89 (307)
T ss_pred             hccCCCEEEEEehh
Confidence            77789998887753

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=94.78  E-value=0.88  Score=42.23  Aligned_cols=133  Identities=11%  Similarity=0.041  Sum_probs=72.9

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      -+|.|.|+|.+|...+...+.   .+..+++ .++++++.    ++++++|.+ .+++..+. - ....|++++++....
T Consensus       167 ~~VlV~G~g~iG~~a~~~a~~---~G~~vi~-~~~~~~~~----~~a~~~Ga~-~vi~~~~~-~-~~~~d~~i~~~~~~~  235 (329)
T TIGR02822       167 GRLGLYGFGGSAHLTAQVALA---QGATVHV-MTRGAAAR----RLALALGAA-SAGGAYDT-P-PEPLDAAILFAPAGG  235 (329)
T ss_pred             CEEEEEcCCHHHHHHHHHHHH---CCCeEEE-EeCChHHH----HHHHHhCCc-eecccccc-C-cccceEEEECCCcHH
Confidence            378999999998776654444   4777665 46666643    455667765 33332111 1 124788888887766


Q ss_pred             cHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCC
Q 017143           87 HYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIG  156 (376)
Q Consensus        87 h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG  156 (376)
                      ....+.++++.+ |+-|++=-+..... .. .+.... .+ ++.+.-..... ...+..+.+++++|++.
T Consensus       236 ~~~~~~~~l~~~-G~~v~~G~~~~~~~-~~-~~~~~~-~~-~~~i~g~~~~~-~~~~~~~~~l~~~g~i~  299 (329)
T TIGR02822       236 LVPPALEALDRG-GVLAVAGIHLTDTP-PL-NYQRHL-FY-ERQIRSVTSNT-RADAREFLELAAQHGVR  299 (329)
T ss_pred             HHHHHHHhhCCC-cEEEEEeccCccCC-CC-CHHHHh-hC-CcEEEEeecCC-HHHHHHHHHHHHhCCCe
Confidence            788888999853 55555432211000 00 011222 12 33333222221 23456677888888774

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=94.78  E-value=0.88  Score=40.97  Aligned_cols=98  Identities=11%  Similarity=0.117  Sum_probs=58.1

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-CCc-cCCHHHHh-hCCCCCEEEEeC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LKV-FPGHQELL-DSGLCDVVVVST   82 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~l-~~~~~D~V~i~t   82 (376)
                      .-+|..||+|. |...+...... .+..++++ +|++++.++.+++..++.+++ +.. ..+++++- .+..+|+|+...
T Consensus        78 g~~VLDiG~G~-G~~~~~~a~~~-g~~~~v~g-vD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~  154 (272)
T PRK11873         78 GETVLDLGSGG-GFDCFLAARRV-GPTGKVIG-VDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC  154 (272)
T ss_pred             CCEEEEeCCCC-CHHHHHHHHHh-CCCCEEEE-ECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence            35899999997 76433333332 24557776 699998887777776666654 111 24565543 233589887554


Q ss_pred             C----CC--ccHHHHHHHHcCCCCCeEEEec
Q 017143           83 P----NM--THYQILMDIINHPKPHHVLVEK  107 (376)
Q Consensus        83 ~----~~--~h~~~~~~al~~~~g~~Vl~EK  107 (376)
                      .    ++  .-...+.++|+-| |+-++.+-
T Consensus       155 v~~~~~d~~~~l~~~~r~LkpG-G~l~i~~~  184 (272)
T PRK11873        155 VINLSPDKERVFKEAFRVLKPG-GRFAISDV  184 (272)
T ss_pred             cccCCCCHHHHHHHHHHHcCCC-cEEEEEEe
Confidence            2    11  1244566678854 66666554

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=94.78  E-value=0.14  Score=43.82  Aligned_cols=35  Identities=26%  Similarity=0.451  Sum_probs=29.3

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPH   42 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~   42 (376)
                      +..||+|||+|.+|...+..+...   ++.-+.++|.|
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~---Gvg~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARA---GIGKLILVDFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHc---CCCEEEEECCC
Confidence            457899999999999999888885   77555588998

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=94.78  E-value=0.12  Score=46.57  Aligned_cols=76  Identities=18%  Similarity=0.158  Sum_probs=50.9

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-C-CccCCHHHHhhCCCCCEEEEeCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-L-KVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      -++.|+|+|..++..+.+|++.   ++.=+.|+.|+.+   +++++++.++-. . .....+.++-...+.|++|-+||-
T Consensus       127 ~~vlilGAGGAarAv~~aL~~~---g~~~i~V~NRt~~---ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~  200 (283)
T COG0169         127 KRVLILGAGGAARAVAFALAEA---GAKRITVVNRTRE---RAEELADLFGELGAAVEAAALADLEGLEEADLLINATPV  200 (283)
T ss_pred             CEEEEECCcHHHHHHHHHHHHc---CCCEEEEEeCCHH---HHHHHHHHhhhcccccccccccccccccccCEEEECCCC
Confidence            5799999999999998888886   6554558999988   566666655421 0 011222222211148999999997


Q ss_pred             CccH
Q 017143           85 MTHY   88 (376)
Q Consensus        85 ~~h~   88 (376)
                      ..+.
T Consensus       201 Gm~~  204 (283)
T COG0169         201 GMAG  204 (283)
T ss_pred             CCCC
Confidence            6654

>PLN02494 adenosylhomocysteinase

Probab=94.77  E-value=0.21  Score=48.18  Aligned_cols=77  Identities=17%  Similarity=0.166  Sum_probs=51.3

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      -+++|+|+|.+|+..+..++..   +.+|+ ++++++.+..    .+...|+.  . .++++++..  .|+|+.++.+..
T Consensus       255 KtVvViGyG~IGr~vA~~aka~---Ga~VI-V~e~dp~r~~----eA~~~G~~--v-v~leEal~~--ADVVI~tTGt~~  321 (477)
T PLN02494        255 KVAVICGYGDVGKGCAAAMKAA---GARVI-VTEIDPICAL----QALMEGYQ--V-LTLEDVVSE--ADIFVTTTGNKD  321 (477)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC---CCEEE-EEeCCchhhH----HHHhcCCe--e-ccHHHHHhh--CCEEEECCCCcc
Confidence            5899999999999988887765   67755 6888876322    22334543  2 267888865  798888665432


Q ss_pred             c-HHHHHHHHc
Q 017143           87 H-YQILMDIIN   96 (376)
Q Consensus        87 h-~~~~~~al~   96 (376)
                      - ..-.++.++
T Consensus       322 vI~~e~L~~MK  332 (477)
T PLN02494        322 IIMVDHMRKMK  332 (477)
T ss_pred             chHHHHHhcCC
Confidence            1 244555566

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=94.76  E-value=0.18  Score=40.20  Aligned_cols=35  Identities=31%  Similarity=0.431  Sum_probs=28.0

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL   43 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~   43 (376)
                      ..||+|+|+|.+|...+..|...   ++.-+.++|.+.
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~---Gv~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARS---GVGKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHH---TTSEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHh---CCCceeecCCcc
Confidence            46999999999999999999887   665566777754

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=94.75  E-value=0.23  Score=43.53  Aligned_cols=71  Identities=21%  Similarity=0.237  Sum_probs=44.2

Q ss_pred             EEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC--CccCCHHHHhhC-CCCCEEEEeCCC
Q 017143            9 YGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL--KVFPGHQELLDS-GLCDVVVVSTPN   84 (376)
Q Consensus         9 v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~-~~~D~V~i~t~~   84 (376)
                      |+|+|+ |..|+..+..|.+   .+++|.+++-....  +.++++.. .|+.+  --|++.+.|-+. .++|+|+++++.
T Consensus         1 I~V~GatG~~G~~v~~~L~~---~~~~V~~l~R~~~~--~~~~~l~~-~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~   74 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLS---AGFSVRALVRDPSS--DRAQQLQA-LGAEVVEADYDDPESLVAALKGVDAVFSVTPP   74 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHH---TTGCEEEEESSSHH--HHHHHHHH-TTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred             CEEECCccHHHHHHHHHHHh---CCCCcEEEEeccch--hhhhhhhc-ccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence            689995 9999999998888   48999987744322  23444433 34431  224444443321 248999999984


Q ss_pred             C
Q 017143           85 M   85 (376)
Q Consensus        85 ~   85 (376)
                      .
T Consensus        75 ~   75 (233)
T PF05368_consen   75 S   75 (233)
T ss_dssp             S
T ss_pred             c
Confidence            4

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK06223 malate dehydrogenase; Reviewed

Probab=94.75  E-value=0.14  Score=47.05  Aligned_cols=72  Identities=26%  Similarity=0.230  Sum_probs=43.8

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHH-HHHHHHh---cCCC--CCccCCHHHHhhCCCCCEEE
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQ-ALKLANA---FDWP--LKVFPGHQELLDSGLCDVVV   79 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~---~~~~--~~~~~~~~~~l~~~~~D~V~   79 (376)
                      |+||+|||+|.+|...+..+...  .-.+++ ++|++++.... +.++...   .+..  ++.++++++ +.+  .|+|+
T Consensus         2 ~~KI~VIGaG~vG~~ia~~la~~--~~~ev~-L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~-~~~--aDiVi   75 (307)
T PRK06223          2 RKKISIIGAGNVGATLAHLLALK--ELGDVV-LFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYED-IAG--SDVVV   75 (307)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCeEEE-EEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHH-HCC--CCEEE
Confidence            36999999999999877777664  212544 77998875421 1112111   1111  233467865 444  89999


Q ss_pred             EeCC
Q 017143           80 VSTP   83 (376)
Q Consensus        80 i~t~   83 (376)
                      ++..
T Consensus        76 i~~~   79 (307)
T PRK06223         76 ITAG   79 (307)
T ss_pred             ECCC
Confidence            8853

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=94.67  E-value=1  Score=41.75  Aligned_cols=134  Identities=17%  Similarity=0.204  Sum_probs=77.1

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcE-EEEEeCCChhhHHHHHHHHHhcCCCCCcc--CC--HHHH---hhCCCCCEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVS-VVCIADPHLQSRQQALKLANAFDWPLKVF--PG--HQEL---LDSGLCDVV   78 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~-~~~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~---l~~~~~D~V   78 (376)
                      -+|.|+|+|.+|...+..++..   +.+ +++ .++++++.+    +++++|.. .++  .+  .+++   .....+|+|
T Consensus       165 ~~vlV~G~G~vG~~~~~~ak~~---G~~~vi~-~~~~~~~~~----~~~~~ga~-~~i~~~~~~~~~~~~~~~~~~~d~v  235 (339)
T cd08239         165 DTVLVVGAGPVGLGALMLARAL---GAEDVIG-VDPSPERLE----LAKALGAD-FVINSGQDDVQEIRELTSGAGADVA  235 (339)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc---CCCEEEE-ECCCHHHHH----HHHHhCCC-EEEcCCcchHHHHHHHhCCCCCCEE
Confidence            4789999999998877666654   666 665 667766433    34456654 222  11  2222   223358999


Q ss_pred             EEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCC
Q 017143           79 VVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIG  156 (376)
Q Consensus        79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG  156 (376)
                      +-++........+.++++. .|+-|++--+...+..   ...... .+ ++.+.-.+... ...+..+.+++.+|.+-
T Consensus       236 id~~g~~~~~~~~~~~l~~-~G~~v~~g~~~~~~~~---~~~~~~-~~-~~~i~g~~~~~-~~~~~~~~~~~~~g~i~  306 (339)
T cd08239         236 IECSGNTAARRLALEAVRP-WGRLVLVGEGGELTIE---VSNDLI-RK-QRTLIGSWYFS-VPDMEECAEFLARHKLE  306 (339)
T ss_pred             EECCCCHHHHHHHHHHhhc-CCEEEEEcCCCCcccC---cHHHHH-hC-CCEEEEEecCC-HHHHHHHHHHHHcCCCC
Confidence            9999877766777888874 3655555332221111   112233 22 44443332222 23577778888887764

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=94.65  E-value=0.36  Score=41.28  Aligned_cols=35  Identities=26%  Similarity=0.334  Sum_probs=29.7

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL   43 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~   43 (376)
                      .-||.|||+|..|...+..|...   ++.-+.++|.+.
T Consensus        21 ~s~VlIiG~gglG~evak~La~~---GVg~i~lvD~d~   55 (197)
T cd01492          21 SARILLIGLKGLGAEIAKNLVLS---GIGSLTILDDRT   55 (197)
T ss_pred             hCcEEEEcCCHHHHHHHHHHHHc---CCCEEEEEECCc
Confidence            46899999999999999988885   787777888764

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PLN02827 Alcohol dehydrogenase-like

Probab=94.65  E-value=0.48  Score=44.98  Aligned_cols=138  Identities=12%  Similarity=0.061  Sum_probs=77.4

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc--C----CHHHHhh---CCCCCE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF--P----GHQELLD---SGLCDV   77 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~l~---~~~~D~   77 (376)
                      -+|.|+|+|.+|...+...+..   ++..+.++++++++.+    +++++|.+ .++  .    ++.+.+.   ...+|+
T Consensus       195 ~~VlV~G~G~vG~~~iqlak~~---G~~~vi~~~~~~~~~~----~a~~lGa~-~~i~~~~~~~~~~~~v~~~~~~g~d~  266 (378)
T PLN02827        195 SSVVIFGLGTVGLSVAQGAKLR---GASQIIGVDINPEKAE----KAKTFGVT-DFINPNDLSEPIQQVIKRMTGGGADY  266 (378)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc---CCCeEEEECCCHHHHH----HHHHcCCc-EEEcccccchHHHHHHHHHhCCCCCE
Confidence            4788999999999877666654   6764555677776433    44556654 121  1    3333332   125899


Q ss_pred             EEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeecccc--CHHHHHHHHHHHcCCC
Q 017143           78 VVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRY--MPPVAKLIQIVKSGSI  155 (376)
Q Consensus        78 V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~--~p~~~~~k~~i~~g~i  155 (376)
                      |+-++........++++++.+.|+-|++--|.. . .......... .+ ++.+.-.+...|  ...+..+.+++++|.|
T Consensus       267 vid~~G~~~~~~~~l~~l~~g~G~iv~~G~~~~-~-~~~~~~~~~~-~~-~~~i~g~~~~~~~~~~~~~~~~~~~~~g~i  342 (378)
T PLN02827        267 SFECVGDTGIATTALQSCSDGWGLTVTLGVPKA-K-PEVSAHYGLF-LS-GRTLKGSLFGGWKPKSDLPSLVDKYMNKEI  342 (378)
T ss_pred             EEECCCChHHHHHHHHhhccCCCEEEEECCcCC-C-ccccccHHHH-hc-CceEEeeecCCCchhhhHHHHHHHHHcCCC
Confidence            999998777778888888732245555433311 0 0110011223 22 334433233333  2356777888888766


Q ss_pred             C
Q 017143          156 G  156 (376)
Q Consensus       156 G  156 (376)
                      -
T Consensus       343 ~  343 (378)
T PLN02827        343 M  343 (378)
T ss_pred             C
Confidence            4

>PRK14982 acyl-ACP reductase; Provisional

Probab=94.63  E-value=0.14  Score=47.47  Aligned_cols=109  Identities=17%  Similarity=0.195  Sum_probs=68.2

Q ss_pred             ceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      ..+|.|+|+ |.+|...++.+...  .++.-+.+++++.+   ++.+++++++..  ...++++.+..  +|+|+.+|..
T Consensus       155 ~k~VLVtGAtG~IGs~lar~L~~~--~gv~~lilv~R~~~---rl~~La~el~~~--~i~~l~~~l~~--aDiVv~~ts~  225 (340)
T PRK14982        155 KATVAVVGATGDIGSAVCRWLDAK--TGVAELLLVARQQE---RLQELQAELGGG--KILSLEEALPE--ADIVVWVASM  225 (340)
T ss_pred             CCEEEEEccChHHHHHHHHHHHhh--CCCCEEEEEcCCHH---HHHHHHHHhccc--cHHhHHHHHcc--CCEEEECCcC
Confidence            468999998 89999988888653  34433446788876   566666666422  23467788876  8999988865


Q ss_pred             CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 017143           85 MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQV  133 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v  133 (376)
                      .....+-.+-++  ++ -++|+=-+=.|++..-     . + .|+.++-
T Consensus       226 ~~~~~I~~~~l~--~~-~~viDiAvPRDVd~~v-----~-~-~~V~v~~  264 (340)
T PRK14982        226 PKGVEIDPETLK--KP-CLMIDGGYPKNLDTKV-----Q-G-PGIHVLK  264 (340)
T ss_pred             CcCCcCCHHHhC--CC-eEEEEecCCCCCCccc-----C-C-CCEEEEe
Confidence            443222233445  33 6777665555555311     2 3 5766644

>TIGR00518 alaDH alanine dehydrogenase

Probab=94.61  E-value=0.11  Score=48.99  Aligned_cols=70  Identities=19%  Similarity=0.303  Sum_probs=48.3

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC-CccC---CHHHHhhCCCCCEEEE
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL-KVFP---GHQELLDSGLCDVVVV   80 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~l~~~~~D~V~i   80 (376)
                      ..-++.|||+|.+|...+..+..+   +.+ +.++|++++   +++.+.+.++..+ ..+.   ++++.+..  .|+|+.
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~l---Ga~-V~v~d~~~~---~~~~l~~~~g~~v~~~~~~~~~l~~~l~~--aDvVI~  236 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGL---GAT-VTILDINID---RLRQLDAEFGGRIHTRYSNAYEIEDAVKR--ADLLIG  236 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHC---CCe-EEEEECCHH---HHHHHHHhcCceeEeccCCHHHHHHHHcc--CCEEEE
Confidence            356899999999999998888876   667 556899887   4555555665321 1122   34555554  899998


Q ss_pred             eCC
Q 017143           81 STP   83 (376)
Q Consensus        81 ~t~   83 (376)
                      +++
T Consensus       237 a~~  239 (370)
T TIGR00518       237 AVL  239 (370)
T ss_pred             ccc
Confidence            874

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=94.58  E-value=0.1  Score=52.80  Aligned_cols=127  Identities=10%  Similarity=0.163  Sum_probs=79.0

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCH--HHHhhC---CCCCEEEE
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGH--QELLDS---GLCDVVVV   80 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~---~~~D~V~i   80 (376)
                      +.+|.|+|.|.+|+...+.+.+.   +.+++ +.|.|+++   .+++ +++|.+ ..|.|.  .+.|++   .+.|+|++
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~---g~~vv-vID~d~~~---v~~~-~~~g~~-v~~GDat~~~~L~~agi~~A~~vv~  470 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMAN---KMRIT-VLERDISA---VNLM-RKYGYK-VYYGDATQLELLRAAGAEKAEAIVI  470 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhC---CCCEE-EEECCHHH---HHHH-HhCCCe-EEEeeCCCHHHHHhcCCccCCEEEE
Confidence            36899999999999888777764   77766 56899884   4333 346765 444432  455553   46899999


Q ss_pred             eCCCCccHHHHHHHHc-CCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHH
Q 017143           81 STPNMTHYQILMDIIN-HPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVK  151 (376)
Q Consensus        81 ~t~~~~h~~~~~~al~-~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~  151 (376)
                      +++++..-..+...++ .....+|++   -+.+.+++++|.++-     ....  ....|....+..++.+.
T Consensus       471 ~~~d~~~n~~i~~~~r~~~p~~~Iia---Ra~~~~~~~~L~~~G-----a~~v--v~e~~es~l~l~~~~L~  532 (601)
T PRK03659        471 TCNEPEDTMKIVELCQQHFPHLHILA---RARGRVEAHELLQAG-----VTQF--SRETFSSALELGRKTLV  532 (601)
T ss_pred             EeCCHHHHHHHHHHHHHHCCCCeEEE---EeCCHHHHHHHHhCC-----CCEE--EccHHHHHHHHHHHHHH
Confidence            9999765544443333 112345555   466777777776654     2211  24455555555555554

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=94.56  E-value=0.64  Score=43.66  Aligned_cols=138  Identities=16%  Similarity=0.115  Sum_probs=75.5

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc----CCHHH-Hhh---CCCCCEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF----PGHQE-LLD---SGLCDVV   78 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~l~---~~~~D~V   78 (376)
                      -+|.|+|+|.+|...+...+..   +.+.+.++++++++++    +++++|.+ .++    .++.+ +.+   ...+|+|
T Consensus       178 ~~VlV~G~g~vG~~a~~~ak~~---G~~~Vi~~~~~~~~~~----~~~~~Ga~-~~i~~~~~~~~~~i~~~~~~~g~d~v  249 (358)
T TIGR03451       178 DSVAVIGCGGVGDAAIAGAALA---GASKIIAVDIDDRKLE----WAREFGAT-HTVNSSGTDPVEAIRALTGGFGADVV  249 (358)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc---CCCeEEEEcCCHHHHH----HHHHcCCc-eEEcCCCcCHHHHHHHHhCCCCCCEE
Confidence            4789999999998877665554   6753335577766433    34556654 222    13322 222   2358999


Q ss_pred             EEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccc--cCHHHHHHHHHHHcCCCC
Q 017143           79 VVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYR--YMPPVAKLIQIVKSGSIG  156 (376)
Q Consensus        79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r--~~p~~~~~k~~i~~g~iG  156 (376)
                      +-++........+..+++.+ |+-|++--+......+. .+.... .+ ++.+.-.+...  ....+..+.+++++|.|-
T Consensus       250 id~~g~~~~~~~~~~~~~~~-G~iv~~G~~~~~~~~~~-~~~~~~-~~-~~~i~~~~~~~~~~~~~~~~~~~l~~~g~l~  325 (358)
T TIGR03451       250 IDAVGRPETYKQAFYARDLA-GTVVLVGVPTPDMTLEL-PLLDVF-GR-GGALKSSWYGDCLPERDFPMLVDLYLQGRLP  325 (358)
T ss_pred             EECCCCHHHHHHHHHHhccC-CEEEEECCCCCCceeec-cHHHHh-hc-CCEEEEeecCCCCcHHHHHHHHHHHHcCCCC
Confidence            99998766667778888743 66565532211000011 112233 22 33333222111  234566777888888774

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional

Probab=94.55  E-value=0.32  Score=43.22  Aligned_cols=77  Identities=18%  Similarity=0.242  Sum_probs=58.1

Q ss_pred             hhHHHHHHHHHhcCCCC--CccC--CHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHH
Q 017143           44 QSRQQALKLANAFDWPL--KVFP--GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKV  119 (376)
Q Consensus        44 ~~~~~~~~~~~~~~~~~--~~~~--~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l  119 (376)
                      +-++..++..+++|+++  .+.+  +.+.+.+.  +|++=|.+-+...++++.++-+  .||+|++=|+...+++|..-.
T Consensus        74 eGL~iL~~vk~~~GlpvvTeV~~~~~~~~~ae~--vDilQIgAr~~rntdLL~a~~~--t~kpV~lKrGqf~s~~e~~~a  149 (281)
T PRK12457         74 EGLRIFEEVKARFGVPVITDVHEVEQAAPVAEV--ADVLQVPAFLARQTDLVVAIAK--TGKPVNIKKPQFMSPTQMKHV  149 (281)
T ss_pred             HHHHHHHHHHHHHCCceEEEeCCHHHHHHHhhh--CeEEeeCchhhchHHHHHHHhc--cCCeEEecCCCcCCHHHHHHH
Confidence            34456677888999982  2222  33444444  8999999999999999999999  899999999999999875555


Q ss_pred             HHHHH
Q 017143          120 VDAAR  124 (376)
Q Consensus       120 ~~~a~  124 (376)
                      .+...
T Consensus       150 ae~i~  154 (281)
T PRK12457        150 VSKCR  154 (281)
T ss_pred             HHHHH
Confidence            55443

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=94.53  E-value=0.2  Score=47.01  Aligned_cols=36  Identities=28%  Similarity=0.404  Sum_probs=30.1

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL   43 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~   43 (376)
                      +.-||.|||+|..|...+..|...   ++.-+.++|.|.
T Consensus        27 ~~~~VlivG~GGlGs~~a~~La~~---Gvg~i~lvD~D~   62 (355)
T PRK05597         27 FDAKVAVIGAGGLGSPALLYLAGA---GVGHITIIDDDT   62 (355)
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHc---CCCeEEEEeCCE
Confidence            357999999999999998888875   777777888875

>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed

Probab=94.52  E-value=0.67  Score=42.90  Aligned_cols=89  Identities=11%  Similarity=0.172  Sum_probs=68.1

Q ss_pred             hhhHHHHHHHHHhcCCCC--CccC--CHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHH
Q 017143           43 LQSRQQALKLANAFDWPL--KVFP--GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKK  118 (376)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~--~~~~--~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~  118 (376)
                      .+.+...++.++++|+++  ..++  +.+.+ .+. +|++-|++.+-.+.++..++-+  .||+|++.++++.+++|...
T Consensus       143 ~~gL~~L~~~~~~~Gl~v~tev~d~~~~~~l-~~~-vd~lqIgAr~~~N~~LL~~va~--~~kPViLk~G~~~ti~E~l~  218 (335)
T PRK08673        143 EEGLKLLAEAREETGLPIVTEVMDPRDVELV-AEY-VDILQIGARNMQNFDLLKEVGK--TNKPVLLKRGMSATIEEWLM  218 (335)
T ss_pred             HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHH-HHh-CCeEEECcccccCHHHHHHHHc--CCCcEEEeCCCCCCHHHHHH
Confidence            344456677788899982  3333  34444 444 8999999999999999999999  89999999999999999999


Q ss_pred             HHHHHHhCCCeEEEEee
Q 017143          119 VVDAARKRPDILVQVGL  135 (376)
Q Consensus       119 l~~~a~~~~~~~~~v~~  135 (376)
                      ..+.....++-.+...+
T Consensus       219 A~e~i~~~GN~~viL~e  235 (335)
T PRK08673        219 AAEYILAEGNPNVILCE  235 (335)
T ss_pred             HHHHHHHcCCCeEEEEE
Confidence            88888655554455544

>COG1810 Uncharacterized protein conserved in archaea [Function unknown]

Probab=94.51  E-value=0.76  Score=39.19  Aligned_cols=133  Identities=13%  Similarity=0.139  Sum_probs=84.4

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhC-CCCCEEEEe-CC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDS-GLCDVVVVS-TP   83 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~D~V~i~-t~   83 (376)
                      ++||+||..|..|.+....+...+ -.-++++|.+. ++            .++ ...+..+++|.. ++.|+++-. ..
T Consensus         1 ~mki~vlt~g~yG~R~~~nl~~~~-f~~~~v~v~~~-Pe------------~~~-~fie~P~~~Lp~~~e~Di~va~~lH   65 (224)
T COG1810           1 MMKILVLTDGEYGKRAVNNLACKG-FKNQFVAVKEY-PE------------ELP-DFIEEPEDLLPKLPEADIVVAYGLH   65 (224)
T ss_pred             CcEEEEEeeccchHHHHHhHhhhc-cccceEEEEec-cc------------ccc-chhhCHHHhcCCCCCCCEEEEeccC
Confidence            589999999999999988887631 23577777776 33            122 344666777776 778977754 66


Q ss_pred             CCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHH--HHHHHHHHHcCCCCceE
Q 017143           84 NMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPP--VAKLIQIVKSGSIGQVK  159 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~--~~~~k~~i~~g~iG~i~  159 (376)
                      |+.-+.++.+|...+ -+.|++  |....-.-.++|.+.+ +..|+.+..-..+.--..  .-.+++.++.  +|++.
T Consensus        66 PDl~~~L~e~~~~~~-~~alIv--p~~~~~g~rkqL~~~~-~~~g~e~~~p~p~C~Le~~~~p~i~~F~e~--FG~P~  137 (224)
T COG1810          66 PDLLLALPEKAAEGG-VKALIV--PAEPPEGLRKQLKEFC-EELGVEFEAPEPFCSLEPNENPHIDEFAER--FGKPE  137 (224)
T ss_pred             ccHHHHHHHHHHhCC-ccEEEE--ecCCChhHHHHHHHHh-hhcceeeecCCccccCCCCCChHHHHHHHH--cCCce
Confidence            788899999886632 345554  3444446777888888 555777644433332111  1244455542  46653

>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional

Probab=94.50  E-value=0.24  Score=43.99  Aligned_cols=88  Identities=13%  Similarity=0.130  Sum_probs=66.5

Q ss_pred             hhhHHHHHHHHHhcCCCC--CccC--CHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHH
Q 017143           43 LQSRQQALKLANAFDWPL--KVFP--GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKK  118 (376)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~--~~~~--~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~  118 (376)
                      ++-++..++..+++|+|+  .+.+  +.+.+.+.  +|++=|..-+....++..++-+  .||+|++=|++..+++|..-
T Consensus        73 eeGL~iL~~vk~~~glpvvTeV~~~~q~~~vae~--~DilQIgAr~~rqtdLL~a~~~--tgkpV~lKkGq~~t~~e~~~  148 (290)
T PLN03033         73 AEGLKILEKVKVAYDLPIVTDVHESSQCEAVGKV--ADIIQIPAFLCRQTDLLVAAAK--TGKIINIKKGQFCAPSVMRN  148 (290)
T ss_pred             HHHHHHHHHHHHHHCCceEEeeCCHHHHHHHHhh--CcEEeeCcHHHHHHHHHHHHHc--cCCeEEeCCCCCCCHHHHHH
Confidence            344566678888999982  2222  33444444  7999999999999999999999  89999999999999999888


Q ss_pred             HHHHHHhCCCeEEEEe
Q 017143          119 VVDAARKRPDILVQVG  134 (376)
Q Consensus       119 l~~~a~~~~~~~~~v~  134 (376)
                      .++.....++-.+++.
T Consensus       149 aaeki~~~GN~~viLc  164 (290)
T PLN03033        149 SAEKVRLAGNPNVMVC  164 (290)
T ss_pred             HHHHHHHcCCCcEEEE
Confidence            8887755544444443

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=94.50  E-value=0.17  Score=48.60  Aligned_cols=78  Identities=21%  Similarity=0.184  Sum_probs=52.3

Q ss_pred             eeEEEEeCChh-hHHHHHHhhhh-cCCCcEEEEEeCCC-hhhHHHHHHHH----HhcCCC--CCccCCHHHHhhCCCCCE
Q 017143            7 VKYGIIGMGMM-GREHFINLHHL-RSQGVSVVCIADPH-LQSRQQALKLA----NAFDWP--LKVFPGHQELLDSGLCDV   77 (376)
Q Consensus         7 ~~v~iiG~G~~-g~~~~~~~~~~-~~~~~~~~~v~d~~-~~~~~~~~~~~----~~~~~~--~~~~~~~~~~l~~~~~D~   77 (376)
                      +||.|||.|+. +...+..+.+. ..-...-+.++|+| +++++...+++    ++.+.+  +..++|.+++|..  .|.
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~g--adf   78 (419)
T cd05296           1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEG--ADF   78 (419)
T ss_pred             CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCC--CCE
Confidence            58999999985 23455555542 11233445589999 78775544444    445543  5678899999987  799


Q ss_pred             EEEeCCCCc
Q 017143           78 VVVSTPNMT   86 (376)
Q Consensus        78 V~i~t~~~~   86 (376)
                      |+++.....
T Consensus        79 Vi~~~~vg~   87 (419)
T cd05296          79 VFTQIRVGG   87 (419)
T ss_pred             EEEEEeeCC
Confidence            998877543

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=94.48  E-value=0.21  Score=43.30  Aligned_cols=129  Identities=12%  Similarity=0.044  Sum_probs=70.2

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC--CCccCCHHHHhhCCCCCEEEEeCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP--LKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      ..+|.|||.|.+|.+-+..|.+.   +.+|+-|. +.-..  ..+++++...+.  -+-|+ . +-++  ..++|++||.
T Consensus        25 ~~~VLVVGGG~VA~RK~~~Ll~~---gA~VtVVa-p~i~~--el~~l~~~~~i~~~~r~~~-~-~dl~--g~~LViaATd   94 (223)
T PRK05562         25 KIKVLIIGGGKAAFIKGKTFLKK---GCYVYILS-KKFSK--EFLDLKKYGNLKLIKGNYD-K-EFIK--DKHLIVIATD   94 (223)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC---CCEEEEEc-CCCCH--HHHHHHhCCCEEEEeCCCC-h-HHhC--CCcEEEECCC
Confidence            46899999999998878777775   67766443 43321  345555544443  12232 1 2233  4899999998


Q ss_pred             CC-ccHHHHHHHHcCCCCCeEEE-ecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHH
Q 017143           84 NM-THYQILMDIINHPKPHHVLV-EKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVK  151 (376)
Q Consensus        84 ~~-~h~~~~~~al~~~~g~~Vl~-EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~  151 (376)
                      +. ....+...|-+  +++.|.+ ..|-     .+.=+.-+.-+++++.+.+.-.-.---..+.+|+.|+
T Consensus        95 D~~vN~~I~~~a~~--~~~lvn~vd~p~-----~~dFi~PAiv~rg~l~IaIST~G~sP~lar~lR~~ie  157 (223)
T PRK05562         95 DEKLNNKIRKHCDR--LYKLYIDCSDYK-----KGLCIIPYQRSTKNFVFALNTKGGSPKTSVFIGEKVK  157 (223)
T ss_pred             CHHHHHHHHHHHHH--cCCeEEEcCCcc-----cCeEEeeeEEecCCEEEEEECCCcCcHHHHHHHHHHH
Confidence            75 45555555555  5665553 3331     1111222222445566666544333233444555444

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=94.45  E-value=0.72  Score=42.10  Aligned_cols=82  Identities=15%  Similarity=0.112  Sum_probs=56.4

Q ss_pred             CCcEEEEEeCCChhhH--HHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCccHHHHH----HHHcCCCCCeEE
Q 017143           31 QGVSVVCIADPHLQSR--QQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMTHYQILM----DIINHPKPHHVL  104 (376)
Q Consensus        31 ~~~~~~~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~h~~~~~----~al~~~~g~~Vl  104 (376)
                      .+++|+ ++|++++..  ++.+.+ ++.|..  ..++..++.++  .|+|+++.|+..+..-+.    ..+.  .| +++
T Consensus        42 AGheV~-V~Drnrsa~e~e~~e~L-aeaGA~--~AaS~aEAAa~--ADVVIL~LPd~aaV~eVl~GLaa~L~--~G-aIV  112 (341)
T TIGR01724        42 AGHDVV-LAEPNREFMSDDLWKKV-EDAGVK--VVSDDKEAAKH--GEIHVLFTPFGKGTFSIARTIIEHVP--EN-AVI  112 (341)
T ss_pred             CCCEEE-EEeCChhhhhhhhhHHH-HHCCCe--ecCCHHHHHhC--CCEEEEecCCHHHHHHHHHHHHhcCC--CC-CEE
Confidence            488876 789887632  122233 345754  77889999987  799999999988764442    2344  45 577


Q ss_pred             EecCCCCCHHHHHHHHHH
Q 017143          105 VEKPLCTTVADCKKVVDA  122 (376)
Q Consensus       105 ~EKP~a~~~~e~~~l~~~  122 (376)
                      |+-. +.+++.+.++.+-
T Consensus       113 ID~S-TIsP~t~~~~~e~  129 (341)
T TIGR01724       113 CNTC-TVSPVVLYYSLEK  129 (341)
T ss_pred             EECC-CCCHHHHHHHHHH
Confidence            7763 6688888877776

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=94.43  E-value=0.26  Score=48.39  Aligned_cols=43  Identities=23%  Similarity=0.236  Sum_probs=34.1

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHH
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKL   52 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~   52 (376)
                      .-||.|+|+|.+|...+...+.+   +.+ |-++|+++++++.++++
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~l---GA~-V~a~D~~~~rle~aesl  207 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSL---GAI-VRAFDTRPEVAEQVESM  207 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC---CCE-EEEEeCCHHHHHHHHHc
Confidence            57999999999999998888877   566 55789999866555543

>cd08230 glucose_DH Glucose dehydrogenase

Probab=94.41  E-value=0.97  Score=42.37  Aligned_cols=135  Identities=10%  Similarity=-0.006  Sum_probs=75.1

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCC--ChhhHHHHHHHHHhcCCCCCcc--CCHHHHhhCCCCCEEEEeC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADP--HLQSRQQALKLANAFDWPLKVF--PGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~D~V~i~t   82 (376)
                      -+|.|+|+|.+|...+..++..   +.+++++...  ++++    .++++++|...-.+  +++++......+|+|+-++
T Consensus       174 ~~vlI~G~G~vG~~a~q~ak~~---G~~vi~~~~~~~~~~~----~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~  246 (355)
T cd08230         174 RRALVLGAGPIGLLAALLLRLR---GFEVYVLNRRDPPDPK----ADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEAT  246 (355)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc---CCeEEEEecCCCCHHH----HHHHHHcCCEEecCCccchhhhhhcCCCCEEEECc
Confidence            4799999999999887666654   6677765422  4443    23455666541011  1222211223589999999


Q ss_pred             CCCccHHHHHHHHcCCCCCeEEEecCCC-----CCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCC
Q 017143           83 PNMTHYQILMDIINHPKPHHVLVEKPLC-----TTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGS  154 (376)
Q Consensus        83 ~~~~h~~~~~~al~~~~g~~Vl~EKP~a-----~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~  154 (376)
                      ........+.++++.+ |+-|++--+..     .+....  +.... .+ ++.+.-.+... ...+..+.+++.++.
T Consensus       247 g~~~~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~--~~~~~-~k-~~~i~g~~~~~-~~~~~~~~~~l~~~~  317 (355)
T cd08230         247 GVPPLAFEALPALAPN-GVVILFGVPGGGREFEVDGGEL--NRDLV-LG-NKALVGSVNAN-KRHFEQAVEDLAQWK  317 (355)
T ss_pred             CCHHHHHHHHHHccCC-cEEEEEecCCCCCccccChhhh--hhhHh-hc-CcEEEEecCCc-hhhHHHHHHHHHhcc
Confidence            8766777788888753 66666644322     221111  12222 22 44443333222 234666777777655

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.41  E-value=0.15  Score=49.68  Aligned_cols=76  Identities=20%  Similarity=0.234  Sum_probs=49.2

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc---CCHHHHhhC--CCCCEEEEe
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF---PGHQELLDS--GLCDVVVVS   81 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~--~~~D~V~i~   81 (376)
                      ++|.|+|+|.+|...+..|...   +.+++ +.|++++   +.+++.++.+++ ..+   .+.+.+.+.  .+.|+|+++
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~---g~~v~-vid~~~~---~~~~~~~~~~~~-~~~gd~~~~~~l~~~~~~~a~~vi~~   72 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGE---NNDVT-VIDTDEE---RLRRLQDRLDVR-TVVGNGSSPDVLREAGAEDADLLIAV   72 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC---CCcEE-EEECCHH---HHHHHHhhcCEE-EEEeCCCCHHHHHHcCCCcCCEEEEe
Confidence            4799999999999988888764   77877 5688887   444444434544 111   222222221  358999999


Q ss_pred             CCCCccHHH
Q 017143           82 TPNMTHYQI   90 (376)
Q Consensus        82 t~~~~h~~~   90 (376)
                      ++....-..
T Consensus        73 ~~~~~~n~~   81 (453)
T PRK09496         73 TDSDETNMV   81 (453)
T ss_pred             cCChHHHHH
Confidence            997644433

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.39  E-value=0.24  Score=48.42  Aligned_cols=91  Identities=18%  Similarity=0.160  Sum_probs=56.1

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH--HHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSR--QQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      -||+|+|+|..|...+..|++.   +.+++ ++|.++...  ....++ ++.|+.+....+..+.+.  ++|+|+++..-
T Consensus        15 ~~i~v~G~G~sG~a~a~~L~~~---G~~V~-~~D~~~~~~~~~~~~~l-~~~gi~~~~~~~~~~~~~--~~dlVV~Spgi   87 (458)
T PRK01710         15 KKVAVVGIGVSNIPLIKFLVKL---GAKVT-AFDKKSEEELGEVSNEL-KELGVKLVLGENYLDKLD--GFDVIFKTPSM   87 (458)
T ss_pred             CeEEEEcccHHHHHHHHHHHHC---CCEEE-EECCCCCccchHHHHHH-HhCCCEEEeCCCChHHhc--cCCEEEECCCC
Confidence            4899999999998766666664   77765 588765311  111233 344654111122344454  38988776333


Q ss_pred             CccHHHHHHHHcCCCCCeEEEe
Q 017143           85 MTHYQILMDIINHPKPHHVLVE  106 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~~Vl~E  106 (376)
                      ....+.+.+|.+  .|.+|+.|
T Consensus        88 ~~~~p~~~~a~~--~~i~i~s~  107 (458)
T PRK01710         88 RIDSPELVKAKE--EGAYITSE  107 (458)
T ss_pred             CCCchHHHHHHH--cCCcEEec
Confidence            445577888888  88998864

>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B

Probab=94.38  E-value=0.075  Score=44.10  Aligned_cols=91  Identities=25%  Similarity=0.218  Sum_probs=50.7

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-CCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      -+.-++|.|..+......+.+.+..+++++|++|.++....  ..   .-++| ....+++.+++.+.++|-|+|+.|..
T Consensus        78 ~~~~~v~~~~~~~~~~~~l~~~~~~g~~vvg~~d~~~~~~~--~~---~~~~~~lg~~~~l~~~~~~~~id~v~ial~~~  152 (175)
T PF13727_consen   78 RNVLIVGAGGAGRELAEALRSNPRLGYRVVGFVDDDPSDRG--PE---IDGVPVLGDLDDLPELVREHDIDEVIIALPWS  152 (175)
T ss_dssp             EEEEEE--SHHHHHHHHHHHH--SSSEEEEEEE-S-GGGTT---E---ETTEEEE--GGGHHHHHHHHT--EEEE--TTS
T ss_pred             cceEEEEEechHHHHHHHHHhhhhcCceEEEEEeCchhhcc--Cc---ccCceeEcCHHHHHHHHHhCCCCEEEEEcCcc
Confidence            34467888888888788887766679999999998876311  10   11444 23456777888888899999999987


Q ss_pred             ccHHH---HHHHHcCCCCCeEE
Q 017143           86 THYQI---LMDIINHPKPHHVL  104 (376)
Q Consensus        86 ~h~~~---~~~al~~~~g~~Vl  104 (376)
                      .+..+   +.+|-+  .|..|.
T Consensus       153 ~~~~i~~ii~~~~~--~~v~v~  172 (175)
T PF13727_consen  153 EEEQIKRIIEELEN--HGVRVR  172 (175)
T ss_dssp             -HHHHHHHHHHHHT--TT-EEE
T ss_pred             CHHHHHHHHHHHHh--CCCEEE
Confidence            66433   223334  566654

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=94.35  E-value=1.7  Score=41.21  Aligned_cols=132  Identities=14%  Similarity=0.212  Sum_probs=72.4

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc--CCHHHHhhC-CCCCEEEEeCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF--PGHQELLDS-GLCDVVVVSTP   83 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~-~~~D~V~i~t~   83 (376)
                      -+|.|.|+|.+|...+...+..   +.+++++...++.    ..++++++|.+ .++  .+.+++.+. ..+|+|+-++.
T Consensus       180 ~~VlV~G~G~vG~~avq~Ak~~---Ga~Vi~~~~~~~~----~~~~a~~lGa~-~~i~~~~~~~v~~~~~~~D~vid~~G  251 (375)
T PLN02178        180 KRLGVNGLGGLGHIAVKIGKAF---GLRVTVISRSSEK----EREAIDRLGAD-SFLVTTDSQKMKEAVGTMDFIIDTVS  251 (375)
T ss_pred             CEEEEEcccHHHHHHHHHHHHc---CCeEEEEeCChHH----hHHHHHhCCCc-EEEcCcCHHHHHHhhCCCcEEEECCC
Confidence            4789999999998877665554   6787766443332    23445567765 222  222222221 24899999987


Q ss_pred             CCccHHHHHHHHcCCCCCeEEEe---cCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCC
Q 017143           84 NMTHYQILMDIINHPKPHHVLVE---KPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIG  156 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~E---KP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG  156 (376)
                      ...-...+.++++.+ |+-|.+-   +|...+.      .... .+ ++.+. +....-...+..+-+++.+|+|-
T Consensus       252 ~~~~~~~~~~~l~~~-G~iv~vG~~~~~~~~~~------~~~~-~~-~~~i~-g~~~~~~~~~~~~~~l~~~g~i~  317 (375)
T PLN02178        252 AEHALLPLFSLLKVS-GKLVALGLPEKPLDLPI------FPLV-LG-RKMVG-GSQIGGMKETQEMLEFCAKHKIV  317 (375)
T ss_pred             cHHHHHHHHHhhcCC-CEEEEEccCCCCCccCH------HHHH-hC-CeEEE-EeCccCHHHHHHHHHHHHhCCCc
Confidence            655566777888743 5555442   3322222      1222 12 33332 22211123456666777777763

>TIGR00460 fmt methionyl-tRNA formyltransferase

Probab=94.24  E-value=0.15  Score=47.00  Aligned_cols=76  Identities=16%  Similarity=0.068  Sum_probs=52.2

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH--------HHHHHHHHhcCCCCCccCC-----HHHHhhCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSR--------QQALKLANAFDWPLKVFPG-----HQELLDSG   73 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~--------~~~~~~~~~~~~~~~~~~~-----~~~~l~~~   73 (376)
                      |||.++|++.++...+..|.+.   ++++++|+...+.+.        ...+++|+++|+|+....+     ..+.+.+.
T Consensus         1 mkIvf~Gs~~~a~~~L~~L~~~---~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~~~~~~~~~~~~l~~~   77 (313)
T TIGR00460         1 LRIVFFGTPTFSLPVLEELRED---NFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEKQRQLEELPLVREL   77 (313)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC---CCcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCCEEecCCCCcHHHHHHHHhh
Confidence            5899999999998888888664   689999996533211        2367888899998322222     22345555


Q ss_pred             CCCEEEEeCCCC
Q 017143           74 LCDVVVVSTPNM   85 (376)
Q Consensus        74 ~~D~V~i~t~~~   85 (376)
                      .+|+++++.-..
T Consensus        78 ~~Dliv~~~~~~   89 (313)
T TIGR00460        78 KPDVIVVVSFGK   89 (313)
T ss_pred             CCCEEEEccchh
Confidence            799988877533

The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.

>TIGR00112 proC pyrroline-5-carboxylate reductase

Probab=94.24  E-value=0.99  Score=40.01  Aligned_cols=118  Identities=13%  Similarity=0.192  Sum_probs=70.6

Q ss_pred             cEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCC-CCCeEEEecCCCC
Q 017143           33 VSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHP-KPHHVLVEKPLCT  111 (376)
Q Consensus        33 ~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~-~g~~Vl~EKP~a~  111 (376)
                      .++ .|++|+++   ++++++++||+.  .+.+.+++.++  .|+|++|++|+.-.++..+ ++.. ...++++-==.+.
T Consensus        10 ~~I-~v~~R~~e---~~~~l~~~~g~~--~~~~~~e~~~~--aDiIiLaVkP~~i~~vl~~-l~~~~~~~~~ivS~~agi   80 (245)
T TIGR00112        10 YDI-IVINRSPE---KLAALAKELGIV--ASSDAQEAVKE--ADVVFLAVKPQDLEEVLSE-LKSEKGKDKLLISIAAGV   80 (245)
T ss_pred             CeE-EEEcCCHH---HHHHHHHHcCcE--EeCChHHHHhh--CCEEEEEeCHHHHHHHHHH-HhhhccCCCEEEEecCCC
Confidence            344 47899887   677888888854  67888888876  7999999996655554433 3200 1234666555677


Q ss_pred             CHHHHHHHHHHH----H--------hCCCeEEEEeeccccCH-HHHHHHHHHHcCCCCceEEEE
Q 017143          112 TVADCKKVVDAA----R--------KRPDILVQVGLEYRYMP-PVAKLIQIVKSGSIGQVKMVA  162 (376)
Q Consensus       112 ~~~e~~~l~~~a----~--------~~~~~~~~v~~~~r~~p-~~~~~k~~i~~g~iG~i~~~~  162 (376)
                      +.++.+++....    +        -..|+... .+.....+ ....++++++  .+|++..+.
T Consensus        81 ~~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~-~~~~~~~~~~~~~v~~lf~--~~G~~~~v~  141 (245)
T TIGR00112        81 TLEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAI-AANANVSEEDRALVLALFK--AVGEVVELP  141 (245)
T ss_pred             CHHHHHHHcCCCCeEEEECCChHHHHhCCeEEE-ecCCCCCHHHHHHHHHHHH--hCCCEEEEC
Confidence            888877765311    0        11122221 12222222 3466677776  489887764

This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=94.23  E-value=0.23  Score=48.54  Aligned_cols=89  Identities=16%  Similarity=0.200  Sum_probs=65.1

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC--CHHHHhhCCCCCEEEEeC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP--GHQELLDSGLCDVVVVST   82 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~D~V~i~t   82 (376)
                      .+.|+.|||+|..|...+.+++..  +...++|+.|.++..   ..  ..-.|++  ++.  ++.+++++..++-++|+-
T Consensus       115 ~~~r~lIiGAG~ag~~l~r~~~~~--~~~~pV~fiDdd~~~---~g--~~i~Gv~--V~g~~~i~~~v~~~~~~~iiiAi  185 (588)
T COG1086         115 NRIRLLIIGAGSAGDLLLRALRRD--PEYTPVAFLDDDPDL---TG--MKIRGVP--VLGRIEIERVVEELGIQLILIAI  185 (588)
T ss_pred             CCCceEEEcCchHHHHHHHHHHhC--CCcceEEEECCChhh---cC--CEEecee--eechhHHHHHHHHcCCceEEEec
Confidence            468999999999999999999998  669999999988862   21  1124666  333  377888888899999999


Q ss_pred             CCCccH---HHHHHHHcCCCCCeEE
Q 017143           83 PNMTHY---QILMDIINHPKPHHVL  104 (376)
Q Consensus        83 ~~~~h~---~~~~~al~~~~g~~Vl  104 (376)
                      |.-.+.   ++...+-+  .|..|-
T Consensus       186 ps~~~~~~~~i~~~l~~--~~~~v~  208 (588)
T COG1086         186 PSASQEERRRILLRLAR--TGIAVR  208 (588)
T ss_pred             CCCCHHHHHHHHHHHHh--cCCcEE
Confidence            976553   34445555  554543

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=94.21  E-value=0.28  Score=43.30  Aligned_cols=36  Identities=22%  Similarity=0.256  Sum_probs=29.8

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChh
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQ   44 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~   44 (376)
                      .-||.|||+|.+|...+..|...   ++.-+.++|.|.-
T Consensus        24 ~~~VlvvG~GglGs~va~~La~~---Gvg~i~lvD~D~v   59 (240)
T TIGR02355        24 ASRVLIVGLGGLGCAASQYLAAA---GVGNLTLLDFDTV   59 (240)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHc---CCCEEEEEeCCcc
Confidence            46999999999999999888886   6666778888764

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=94.21  E-value=0.28  Score=49.21  Aligned_cols=122  Identities=10%  Similarity=0.096  Sum_probs=72.2

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCC--HHHHhhC---CCCCEEEEe
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPG--HQELLDS---GLCDVVVVS   81 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~---~~~D~V~i~   81 (376)
                      =++.|+|+|.+|+.....+.+.   +.+++ +.|.|++   +.+++. ++|.+ ..+.|  -++.+++   .+.|+|+++
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~---g~~vv-vId~d~~---~~~~~~-~~g~~-~i~GD~~~~~~L~~a~i~~a~~viv~  488 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAA---GIPLV-VIETSRT---RVDELR-ERGIR-AVLGNAANEEIMQLAHLDCARWLLLT  488 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHC---CCCEE-EEECCHH---HHHHHH-HCCCe-EEEcCCCCHHHHHhcCccccCEEEEE
Confidence            4789999999999988888775   66766 5788887   444443 45665 33332  2344442   468999999


Q ss_pred             CCCCccHHHHHHHHcCC-CCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHH
Q 017143           82 TPNMTHYQILMDIINHP-KPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVK  151 (376)
Q Consensus        82 t~~~~h~~~~~~al~~~-~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~  151 (376)
                      ++++.....+..+++.. ..++|+.=   +.+.++.+.+.+ +    |..      .-.+|....++++.+
T Consensus       489 ~~~~~~~~~iv~~~~~~~~~~~iiar---~~~~~~~~~l~~-~----Gad------~vv~p~~~~a~~i~~  545 (558)
T PRK10669        489 IPNGYEAGEIVASAREKRPDIEIIAR---AHYDDEVAYITE-R----GAN------QVVMGEREIARTMLE  545 (558)
T ss_pred             cCChHHHHHHHHHHHHHCCCCeEEEE---ECCHHHHHHHHH-c----CCC------EEEChHHHHHHHHHH
Confidence            99876544333333211 23455542   445555555532 2    333      333666666665554

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=94.19  E-value=0.23  Score=40.69  Aligned_cols=83  Identities=19%  Similarity=0.223  Sum_probs=49.5

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      -++.|+|.|+.|+..+..++.+   +.+++ |++.||-+  ..++..  -|+.  + .+.++++..  .|+++-+|.+..
T Consensus        24 k~vvV~GYG~vG~g~A~~lr~~---Ga~V~-V~e~DPi~--alqA~~--dGf~--v-~~~~~a~~~--adi~vtaTG~~~   90 (162)
T PF00670_consen   24 KRVVVIGYGKVGKGIARALRGL---GARVT-VTEIDPIR--ALQAAM--DGFE--V-MTLEEALRD--ADIFVTATGNKD   90 (162)
T ss_dssp             SEEEEE--SHHHHHHHHHHHHT---T-EEE-EE-SSHHH--HHHHHH--TT-E--E-E-HHHHTTT---SEEEE-SSSSS
T ss_pred             CEEEEeCCCcccHHHHHHHhhC---CCEEE-EEECChHH--HHHhhh--cCcE--e-cCHHHHHhh--CCEEEECCCCcc
Confidence            4799999999999999888887   77755 89999873  233332  3554  3 368888876  798888888643


Q ss_pred             --cHHHHHHHHcCCCCCeEEEe
Q 017143           87 --HYQILMDIINHPKPHHVLVE  106 (376)
Q Consensus        87 --h~~~~~~al~~~~g~~Vl~E  106 (376)
                        ..++ .+.++  .| .+++-
T Consensus        91 vi~~e~-~~~mk--dg-ail~n  108 (162)
T PF00670_consen   91 VITGEH-FRQMK--DG-AILAN  108 (162)
T ss_dssp             SB-HHH-HHHS---TT-EEEEE
T ss_pred             ccCHHH-HHHhc--CC-eEEec
Confidence              2333 33466  44 45554

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=94.18  E-value=0.38  Score=42.20  Aligned_cols=140  Identities=15%  Similarity=0.127  Sum_probs=82.8

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhh--------------H--HHHHHHHH---hcC--CCCCcc
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQS--------------R--QQALKLAN---AFD--WPLKVF   63 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~--------------~--~~~~~~~~---~~~--~~~~~~   63 (376)
                      +..+|.|||+|.+|...+..|...   ++.=.-++|.|.-.              .  .|++.+++   +.+  +.+..+
T Consensus        10 ~~~~VlVvG~GGvGs~va~~Lar~---GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~   86 (231)
T cd00755          10 RNAHVAVVGLGGVGSWAAEALARS---GVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAV   86 (231)
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHc---CCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEe
Confidence            357899999999999999999886   55445566765310              0  12222222   222  111112


Q ss_pred             ------CCHHHHhhCCCCCEEEEeCCCC-ccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeec
Q 017143           64 ------PGHQELLDSGLCDVVVVSTPNM-THYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLE  136 (376)
Q Consensus        64 ------~~~~~~l~~~~~D~V~i~t~~~-~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~  136 (376)
                            ++.++++.. ++|+|+.|+-+. ....+...|.+  .+++++.--=.+--          . +-..+.+.--+.
T Consensus        87 ~~~i~~~~~~~l~~~-~~D~VvdaiD~~~~k~~L~~~c~~--~~ip~I~s~g~g~~----------~-dp~~i~i~di~~  152 (231)
T cd00755          87 EEFLTPDNSEDLLGG-DPDFVVDAIDSIRAKVALIAYCRK--RKIPVISSMGAGGK----------L-DPTRIRVADISK  152 (231)
T ss_pred             eeecCHhHHHHHhcC-CCCEEEEcCCCHHHHHHHHHHHHH--hCCCEEEEeCCcCC----------C-CCCeEEEccEec
Confidence                  245566643 489999887764 33455666777  77887775221110          0 112345555566


Q ss_pred             cccCHHHHHHHHHHHcCCCC-ceEEE
Q 017143          137 YRYMPPVAKLIQIVKSGSIG-QVKMV  161 (376)
Q Consensus       137 ~r~~p~~~~~k~~i~~g~iG-~i~~~  161 (376)
                      ....|..+.+|+.+++..+- .+.-+
T Consensus       153 t~~~pla~~~R~~Lrk~~~~~~~~~v  178 (231)
T cd00755         153 TSGDPLARKVRKRLRKRGIFFGVPVV  178 (231)
T ss_pred             cccCcHHHHHHHHHHHcCCCCCeEEE
Confidence            77789999999999765542 34444

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=94.16  E-value=0.26  Score=49.95  Aligned_cols=127  Identities=14%  Similarity=0.161  Sum_probs=77.7

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCH--HHHhhC---CCCCEEEE
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGH--QELLDS---GLCDVVVV   80 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~---~~~D~V~i   80 (376)
                      .-+|.|+|+|.+|+...+.+.+.   +++++ +.|.|+++   .+++ +++|.+ ..|.|.  .++|++   .+.|+|++
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~---g~~vv-vID~d~~~---v~~~-~~~g~~-v~~GDat~~~~L~~agi~~A~~vvv  470 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSS---GVKMT-VLDHDPDH---IETL-RKFGMK-VFYGDATRMDLLESAGAAKAEVLIN  470 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhC---CCCEE-EEECCHHH---HHHH-HhcCCe-EEEEeCCCHHHHHhcCCCcCCEEEE
Confidence            36899999999999888877764   77877 45999984   4443 345765 344432  345543   46899999


Q ss_pred             eCCCCccHHHHHH-HHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHH
Q 017143           81 STPNMTHYQILMD-IINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVK  151 (376)
Q Consensus        81 ~t~~~~h~~~~~~-al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~  151 (376)
                      +++++..-..+.. +-+.....+|++   -+.+.+++.+|.++-     +...  ....+.+.....++.++
T Consensus       471 ~~~d~~~n~~i~~~ar~~~p~~~iia---Ra~d~~~~~~L~~~G-----ad~v--~~e~~e~sl~l~~~~L~  532 (621)
T PRK03562        471 AIDDPQTSLQLVELVKEHFPHLQIIA---RARDVDHYIRLRQAG-----VEKP--ERETFEGALKSGRLVLE  532 (621)
T ss_pred             EeCCHHHHHHHHHHHHHhCCCCeEEE---EECCHHHHHHHHHCC-----CCEE--ehhhHhHHHHHHHHHHH
Confidence            9988654444433 333112234544   356777777776553     1211  34455666666666665

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=94.12  E-value=0.22  Score=48.28  Aligned_cols=90  Identities=21%  Similarity=0.188  Sum_probs=53.4

Q ss_pred             eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHH-HHHHH-hcCCCCCcc-CCHHHHhhCCCCCEEEEeCCC
Q 017143            8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQA-LKLAN-AFDWPLKVF-PGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~-~~~~~~~~~-~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      ||.|||+|..|...+..|.+   .+.+|. ++|..+...... ..+.+ ..|+.  .+ ..-.+.+.  +.|+|+++.--
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~---~G~~V~-~sD~~~~~~~~~~~~~~~~~~gi~--~~~g~~~~~~~--~~d~vv~sp~i   72 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHK---KGAEVT-VTDLKPNEELEPSMGQLRLNEGSV--LHTGLHLEDLN--NADLVVKSPGI   72 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHH---CCCEEE-EEeCCCCccchhHHHHHhhccCcE--EEecCchHHhc--cCCEEEECCCC
Confidence            58999999999955555555   488866 588655421111 11222 34765  22 12244454  37877665543


Q ss_pred             CccHHHHHHHHcCCCCCeEEEec
Q 017143           85 MTHYQILMDIINHPKPHHVLVEK  107 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~~Vl~EK  107 (376)
                      ....+...+|.+  +|++|+.|-
T Consensus        73 ~~~~p~~~~a~~--~~i~i~~~~   93 (433)
T TIGR01087        73 PPDHPLVQAAAK--RGIPVVGDI   93 (433)
T ss_pred             CCCCHHHHHHHH--CCCcEEEHH
Confidence            333456777778  889988764

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=94.04  E-value=0.17  Score=42.07  Aligned_cols=68  Identities=19%  Similarity=0.217  Sum_probs=41.1

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC--CHHHHhhCCCCCEEEEeCC
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP--GHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~D~V~i~t~   83 (376)
                      |||||||+ |..|+..+......   +-+++||+ |++.+....+.+.- ..-  .+|+  +..+.|..  .|+|+-+-.
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~R---GHeVTAiv-Rn~~K~~~~~~~~i-~q~--Difd~~~~a~~l~g--~DaVIsA~~   71 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKR---GHEVTAIV-RNASKLAARQGVTI-LQK--DIFDLTSLASDLAG--HDAVISAFG   71 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhC---CCeeEEEE-eChHhcccccccee-ecc--cccChhhhHhhhcC--CceEEEecc
Confidence            68999996 88888888776664   89999987 66653211111110 011  2333  22355544  799987654

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=94.03  E-value=2.1  Score=40.25  Aligned_cols=134  Identities=10%  Similarity=0.138  Sum_probs=74.8

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCc--cCCHHHHhhC-CCCCEEEEeCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKV--FPGHQELLDS-GLCDVVVVSTP   83 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~-~~~D~V~i~t~   83 (376)
                      -++.|+|+|.+|...+...+..   +.+++++.+ +++   +...+.+++|.. ..  +.+.+++.+. ..+|+|+-++.
T Consensus       182 ~~vlV~G~G~vG~~av~~Ak~~---G~~vi~~~~-~~~---~~~~~~~~~Ga~-~~i~~~~~~~~~~~~~~~D~vid~~g  253 (357)
T PLN02514        182 LRGGILGLGGVGHMGVKIAKAM---GHHVTVISS-SDK---KREEALEHLGAD-DYLVSSDAAEMQEAADSLDYIIDTVP  253 (357)
T ss_pred             CeEEEEcccHHHHHHHHHHHHC---CCeEEEEeC-CHH---HHHHHHHhcCCc-EEecCCChHHHHHhcCCCcEEEECCC
Confidence            4688999999999877665554   677776554 444   233444567764 22  1222222221 24899999988


Q ss_pred             CCccHHHHHHHHcCCCCCeEEEecC---CCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCce
Q 017143           84 NMTHYQILMDIINHPKPHHVLVEKP---LCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQV  158 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~EKP---~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i  158 (376)
                      ...-...+.++++.+ |+-|.+=.+   ...+.      .... .+ ++.+.-.+...+ ..+..+.+++.+|.+-.+
T Consensus       254 ~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~------~~~~-~~-~~~i~g~~~~~~-~~~~~~~~~~~~g~l~~~  321 (357)
T PLN02514        254 VFHPLEPYLSLLKLD-GKLILMGVINTPLQFVT------PMLM-LG-RKVITGSFIGSM-KETEEMLEFCKEKGLTSM  321 (357)
T ss_pred             chHHHHHHHHHhccC-CEEEEECCCCCCCcccH------HHHh-hC-CcEEEEEecCCH-HHHHHHHHHHHhCCCcCc
Confidence            655667778888753 666665332   22222      1222 22 333333322222 245667778878776443

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=94.01  E-value=0.33  Score=43.51  Aligned_cols=131  Identities=15%  Similarity=0.091  Sum_probs=80.6

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhh----------------HHHHHHHHHh---cCCC--CCcc
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQS----------------RQQALKLANA---FDWP--LKVF   63 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~----------------~~~~~~~~~~---~~~~--~~~~   63 (376)
                      ...+|.|||+|.+|...+..|...   ++.=+.++|.|.-.                ..|++.++++   .+-.  +..+
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~---GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i  105 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALART---GIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVV  105 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHc---CCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEE
Confidence            357899999999999999998886   54444466655210                0123233322   2211  1111


Q ss_pred             ------CCHHHHhhCCCCCEEEEeCCC-CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeec
Q 017143           64 ------PGHQELLDSGLCDVVVVSTPN-MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLE  136 (376)
Q Consensus        64 ------~~~~~~l~~~~~D~V~i~t~~-~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~  136 (376)
                            ++.++++.. ++|+|+.|.-+ .....+...|.+  ++++++.--=.+          ... +-..+.+.--..
T Consensus       106 ~~~i~~e~~~~ll~~-~~D~VIdaiD~~~~k~~L~~~c~~--~~ip~I~~gGag----------~k~-dp~~~~~~di~~  171 (268)
T PRK15116        106 DDFITPDNVAEYMSA-GFSYVIDAIDSVRPKAALIAYCRR--NKIPLVTTGGAG----------GQI-DPTQIQVVDLAK  171 (268)
T ss_pred             ecccChhhHHHHhcC-CCCEEEEcCCCHHHHHHHHHHHHH--cCCCEEEECCcc----------cCC-CCCeEEEEeeec
Confidence                  244556642 48999988876 455566667777  778877552111          112 223455666677


Q ss_pred             cccCHHHHHHHHHHHc
Q 017143          137 YRYMPPVAKLIQIVKS  152 (376)
Q Consensus       137 ~r~~p~~~~~k~~i~~  152 (376)
                      ...+|..+.+|+.+++
T Consensus       172 t~~~pla~~~R~~lr~  187 (268)
T PRK15116        172 TIQDPLAAKLRERLKS  187 (268)
T ss_pred             ccCChHHHHHHHHHHH
Confidence            7789999999999986

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=93.96  E-value=0.25  Score=44.65  Aligned_cols=115  Identities=22%  Similarity=0.136  Sum_probs=65.4

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC------CccCCHHHHhhCCCCCEE
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL------KVFPGHQELLDSGLCDVV   78 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~D~V   78 (376)
                      ..-+|.|+|+|..|...++.|...   ++.-+.++|.+.-.   ...+.+++-+..      +. ....+-|.+-++++-
T Consensus        18 ~~s~VLIvG~gGLG~EiaKnLala---GVg~itI~D~d~ve---~snL~rqf~~~~~dIGk~Ka-ea~~~~L~eLNp~V~   90 (286)
T cd01491          18 QKSNVLISGLGGLGVEIAKNLILA---GVKSVTLHDTKPCS---WSDLSSQFYLREEDIGKNRA-EASQARLAELNPYVP   90 (286)
T ss_pred             hcCcEEEEcCCHHHHHHHHHHHHc---CCCeEEEEcCCccc---hhhcccCccCChHHhCHHHH-HHHHHHHHHHCCCCE
Confidence            457999999999999999998775   88888899987642   334444432210      10 112222332233332


Q ss_pred             EEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeec
Q 017143           79 VVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLE  136 (376)
Q Consensus        79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~  136 (376)
                      +-......    ..+.+.. .-.-|.|+    .+.+....+-++|++ +++++..+..
T Consensus        91 V~~~~~~~----~~~~l~~-fdvVV~~~----~~~~~~~~in~~c~~-~~ipfI~a~~  138 (286)
T cd01491          91 VTVSTGPL----TTDELLK-FQVVVLTD----ASLEDQLKINEFCHS-PGIKFISADT  138 (286)
T ss_pred             EEEEeccC----CHHHHhc-CCEEEEec----CCHHHHHHHHHHHHH-cCCEEEEEec
Confidence            22221111    1233431 22223332    377788888899954 5888888766

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=93.89  E-value=0.3  Score=51.28  Aligned_cols=90  Identities=21%  Similarity=0.169  Sum_probs=57.3

Q ss_pred             ceeEEEEeCChhhHHH-HHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc-CCHHHHhhCCCCCEEEEeCC
Q 017143            6 TVKYGIIGMGMMGREH-FINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF-PGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~-~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~D~V~i~t~   83 (376)
                      +.+|.|||+|..|... +..|.+   .+.+|+ ++|.++..  ...++ ++.|+.  ++ ....+.+.  ++|+|+++..
T Consensus         4 ~~~i~viG~G~sG~salA~~L~~---~G~~V~-~sD~~~~~--~~~~L-~~~gi~--~~~g~~~~~~~--~~d~vV~Spg   72 (809)
T PRK14573          4 SLFYHFIGIGGIGMSALAHILLD---RGYSVS-GSDLSEGK--TVEKL-KAKGAR--FFLGHQEEHVP--EDAVVVYSSS   72 (809)
T ss_pred             cceEEEEEecHHhHHHHHHHHHH---CCCeEE-EECCCCCh--HHHHH-HHCCCE--EeCCCCHHHcC--CCCEEEECCC
Confidence            4469999999999887 444554   588876 58876543  23344 345765  32 22334454  3798877655


Q ss_pred             CCccHHHHHHHHcCCCCCeEEEecC
Q 017143           84 NMTHYQILMDIINHPKPHHVLVEKP  108 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~EKP  108 (376)
                      -....+...+|.+  +|++|+-|-=
T Consensus        73 I~~~~p~~~~a~~--~gi~v~~~~e   95 (809)
T PRK14573         73 ISKDNVEYLSAKS--RGNRLVHRAE   95 (809)
T ss_pred             cCCCCHHHHHHHH--CCCcEEeHHH
Confidence            4444456677888  8899887643

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=93.88  E-value=1.5  Score=38.73  Aligned_cols=137  Identities=18%  Similarity=0.256  Sum_probs=87.9

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCC-------ChhhHHHHHHHHHhcCCCCCccC----------CH-
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADP-------HLQSRQQALKLANAFDWPLKVFP----------GH-   66 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~-------~~~~~~~~~~~~~~~~~~~~~~~----------~~-   66 (376)
                      +-.+++|-|.|.+|...+..|.+.   +.++++|+|.       +.-..+...+...+.+..+..|.          +- 
T Consensus        31 ~g~~v~IqGfG~VG~~~a~~l~~~---Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~  107 (244)
T PF00208_consen   31 EGKRVAIQGFGNVGSHAARFLAEL---GAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPND  107 (244)
T ss_dssp             TTCEEEEEESSHHHHHHHHHHHHT---TEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc---CCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEeccc
Confidence            458999999999999988888886   8999998654       33334455555555554112232          12 


Q ss_pred             HHHhhCCCCCEEEEeC-CCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHH
Q 017143           67 QELLDSGLCDVVVVST-PNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAK  145 (376)
Q Consensus        67 ~~~l~~~~~D~V~i~t-~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~  145 (376)
                      ++++.. ++|+.+-|. ++.-+.+.+...++  +|..++||--=.....++.+  .+. ++ |+.+...+-..-...+..
T Consensus       108 ~~il~~-~~DiliP~A~~~~I~~~~~~~~i~--~~akiIvegAN~p~t~~a~~--~L~-~r-GI~viPD~~aNaGGvi~s  180 (244)
T PF00208_consen  108 DEILSV-DCDILIPCALGNVINEDNAPSLIK--SGAKIIVEGANGPLTPEADE--ILR-ER-GILVIPDFLANAGGVIVS  180 (244)
T ss_dssp             CHGGTS-SSSEEEEESSSTSBSCHHHCHCHH--TT-SEEEESSSSSBSHHHHH--HHH-HT-T-EEE-HHHHTTHHHHHH
T ss_pred             cccccc-cccEEEEcCCCCeeCHHHHHHHHh--ccCcEEEeCcchhccHHHHH--HHH-HC-CCEEEcchhhcCCCeEee
Confidence            267765 599999887 45688888887888  77889999744444466665  333 55 877776665555444444


Q ss_pred             HHHHHH
Q 017143          146 LIQIVK  151 (376)
Q Consensus       146 ~k~~i~  151 (376)
                      ..++++
T Consensus       181 ~~E~~~  186 (244)
T PF00208_consen  181 YFEWLQ  186 (244)
T ss_dssp             HHHHHH
T ss_pred             hhhhcc
Confidence            444443

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=93.87  E-value=0.36  Score=44.66  Aligned_cols=100  Identities=17%  Similarity=0.114  Sum_probs=61.4

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCC--ChhhHHHHHHHHHhcC-C---CCC---------------cc--
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADP--HLQSRQQALKLANAFD-W---PLK---------------VF--   63 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~--~~~~~~~~~~~~~~~~-~---~~~---------------~~--   63 (376)
                      +||||-|.|+||+..++++...  +++++++|-|+  +.+...-..+.=.-+| +   ++.               ++  
T Consensus         3 ~kv~INGfGRIGR~v~R~~~~~--~~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~~~~~l~i~g~~~i~~~~~   80 (342)
T PTZ00353          3 ITVGINGFGPVGKAVLFASLTD--PLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRVVGEQIVLNGTQKIRVSAK   80 (342)
T ss_pred             eEEEEECCChHHHHHHHHHHhc--CCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEEcCCEEecCCCeEEEEEec
Confidence            7999999999999988886654  78999999984  4442222211111111 1   110               11  


Q ss_pred             CCHHHHhh-CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCC
Q 017143           64 PGHQELLD-SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPL  109 (376)
Q Consensus        64 ~~~~~~l~-~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~  109 (376)
                      .+.+++-. +.++|+|+-||......+-+..-+.+|+ +-|++--|.
T Consensus        81 ~dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Ga-kkviisaps  126 (342)
T PTZ00353         81 HDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGA-KGVFVAGQS  126 (342)
T ss_pred             CCcccCcccccCCCEEEEcccccccHhhhhhhhhcCC-CcEEEeCCC
Confidence            11222211 1269999999998877777777777443 556665563

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=93.84  E-value=0.17  Score=41.58  Aligned_cols=128  Identities=12%  Similarity=0.072  Sum_probs=69.5

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHH-HhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQE-LLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~D~V~i~t~~   84 (376)
                      --+|.|||.|.+|..-+..|...   +.+++-| +++.     .+++.+.-.+. ..-..+++ -+  .+.|+|+.+|.+
T Consensus        13 ~~~vlVvGGG~va~rka~~Ll~~---ga~V~VI-sp~~-----~~~l~~l~~i~-~~~~~~~~~dl--~~a~lViaaT~d   80 (157)
T PRK06719         13 NKVVVIIGGGKIAYRKASGLKDT---GAFVTVV-SPEI-----CKEMKELPYIT-WKQKTFSNDDI--KDAHLIYAATNQ   80 (157)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC---CCEEEEE-cCcc-----CHHHHhccCcE-EEecccChhcC--CCceEEEECCCC
Confidence            36899999999999888877774   6777744 4432     22222211111 01112221 12  347999999988


Q ss_pred             CccHHHHHHHHcCCCCCeE-EEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHc
Q 017143           85 MTHYQILMDIINHPKPHHV-LVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKS  152 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~~V-l~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~  152 (376)
                      ..--..+.++.+  ++..| .+..|-     .+.-..-+.-+++++.+.+.-+-.--...+.+|+.|++
T Consensus        81 ~e~N~~i~~~a~--~~~~vn~~d~~~-----~~~f~~pa~v~~~~l~iaisT~G~sP~la~~lr~~ie~  142 (157)
T PRK06719         81 HAVNMMVKQAAH--DFQWVNVVSDGT-----ESSFHTPGVIRNDEYVVTISTSGKDPSFTKRLKQELTS  142 (157)
T ss_pred             HHHHHHHHHHHH--HCCcEEECCCCC-----cCcEEeeeEEEECCeEEEEECCCcChHHHHHHHHHHHH
Confidence            654444444445  33222 223332     22222222225567777777666544466777777764

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=93.82  E-value=0.42  Score=46.54  Aligned_cols=73  Identities=19%  Similarity=0.177  Sum_probs=48.4

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc-CCCCCcc---CCHHHHhhC--CCCCEEE
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF-DWPLKVF---PGHQELLDS--GLCDVVV   79 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~l~~--~~~D~V~   79 (376)
                      +.++.|+|+|.+|...+..|.+.   +.+++ +.|.+++   +.+++.+++ ++. ..+   .+.+.+.+.  .+.|+|+
T Consensus       231 ~~~iiIiG~G~~g~~l~~~L~~~---~~~v~-vid~~~~---~~~~~~~~~~~~~-~i~gd~~~~~~L~~~~~~~a~~vi  302 (453)
T PRK09496        231 VKRVMIVGGGNIGYYLAKLLEKE---GYSVK-LIERDPE---RAEELAEELPNTL-VLHGDGTDQELLEEEGIDEADAFI  302 (453)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC---CCeEE-EEECCHH---HHHHHHHHCCCCe-EEECCCCCHHHHHhcCCccCCEEE
Confidence            57899999999999988887764   77765 5688887   444555443 433 122   233333222  3689999


Q ss_pred             EeCCCCc
Q 017143           80 VSTPNMT   86 (376)
Q Consensus        80 i~t~~~~   86 (376)
                      +++++..
T Consensus       303 ~~~~~~~  309 (453)
T PRK09496        303 ALTNDDE  309 (453)
T ss_pred             ECCCCcH
Confidence            9998753

>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated

Probab=93.82  E-value=0.28  Score=47.61  Aligned_cols=87  Identities=16%  Similarity=0.084  Sum_probs=56.2

Q ss_pred             eeEEEEeCChhhHHHHHHhh-hhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCC---HHHHhhCCCCCEEEEeC
Q 017143            7 VKYGIIGMGMMGREHFINLH-HLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPG---HQELLDSGLCDVVVVST   82 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~-~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~D~V~i~t   82 (376)
                      -|+.|||+|..|... ..+. +....+++++|+++.+++.   .    .-.|++  ++.+   +.+++++.++|-|+|+.
T Consensus       125 rrvLIIGag~~~~~L-~~l~~~~~~~g~~vVGfi~~dd~~---~----~i~gvp--VlG~~~dl~~~v~~~~Id~ViIAl  194 (442)
T TIGR03013       125 RRILVLGTGPRAREI-ARLRRSSDRRGHEIVGFVPLPDEP---A----YVPSEH--VIENGDGLVEYVLRHRIDEIVIAL  194 (442)
T ss_pred             CcEEEEECCHHHHHH-HHHHHhCccCCeEEEEEEcCCccc---c----ccCCCc--ccCCHHHHHHHHHhCCCCEEEEEC
Confidence            579999999988876 4443 3333589999999654332   1    223555  5554   55667777899999999


Q ss_pred             CCCccH---HHHHHHHcCCCCCeEEE
Q 017143           83 PNMTHY---QILMDIINHPKPHHVLV  105 (376)
Q Consensus        83 ~~~~h~---~~~~~al~~~~g~~Vl~  105 (376)
                      |...+.   +.+..|-+  .|.+|..
T Consensus       195 p~~~~~~~~~~l~~~~~--~gv~V~i  218 (442)
T TIGR03013       195 DERRGSLPVDELLECKL--SGIEVVD  218 (442)
T ss_pred             chhhcchHHHHHHHHHh--CCCEEEE
Confidence            865442   23444444  5666654

Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=93.79  E-value=0.28  Score=48.74  Aligned_cols=127  Identities=15%  Similarity=0.155  Sum_probs=73.9

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      -++.|+|+|.+|+..+..|...   +++|+ +++++.+   ++++++++++.....+.+..+.+.. +.|+|+-+||...
T Consensus       380 k~vlIlGaGGagrAia~~L~~~---G~~V~-i~nR~~e---~a~~la~~l~~~~~~~~~~~~~~~~-~~diiINtT~vGm  451 (529)
T PLN02520        380 KLFVVIGAGGAGKALAYGAKEK---GARVV-IANRTYE---RAKELADAVGGQALTLADLENFHPE-EGMILANTTSVGM  451 (529)
T ss_pred             CEEEEECCcHHHHHHHHHHHHC---CCEEE-EEcCCHH---HHHHHHHHhCCceeeHhHhhhhccc-cCeEEEecccCCC
Confidence            4789999999999888888876   56755 7899877   6677777665321223333333322 3688888888665


Q ss_pred             cH-----HHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHH
Q 017143           87 HY-----QILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQ  148 (376)
Q Consensus        87 h~-----~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~  148 (376)
                      +.     .+-...++  . ..+.++-  .-++.+ -.|++.|+++ |..+.-|.......+....+-
T Consensus       452 ~~~~~~~pl~~~~l~--~-~~~v~D~--vY~P~~-T~ll~~A~~~-G~~~~~Gl~MLv~Qa~~~f~l  511 (529)
T PLN02520        452 QPNVDETPISKHALK--H-YSLVFDA--VYTPKI-TRLLREAEES-GAIIVSGTEMFIRQAYEQFER  511 (529)
T ss_pred             CCCCCCCcccHhhCC--C-CCEEEEe--ccCCCc-CHHHHHHHHC-CCeEeCcHHHHHHHHHHHHHH
Confidence            42     12223344  2 3344442  112222 2366666344 777777766555444444433

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=93.71  E-value=0.23  Score=42.20  Aligned_cols=79  Identities=22%  Similarity=0.184  Sum_probs=51.8

Q ss_pred             eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhC-CCCCEEEEeCCCC-
Q 017143            8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDS-GLCDVVVVSTPNM-   85 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~D~V~i~t~~~-   85 (376)
                      ++.|+|+|..|+..+..|.+   .++++++++|.++...  -+.   -.|+|  .+.+.+++... .+.+.++++.+.. 
T Consensus         1 ~~~I~Gag~~g~~~~~~l~~---~g~~vvgfid~~~~~~--~~~---i~g~p--vlg~~~~l~~~~~~~~~~iiai~~~~   70 (201)
T TIGR03570         1 KLVIIGAGGHGRVVADIAED---SGWEIVGFLDDNPALQ--GTS---VDGLP--VLGGDEDLLRYPPDEVDLVVAIGDNK   70 (201)
T ss_pred             CEEEEcCCHHHHHHHHHHHh---CCCEEEEEEcCCcccc--Ccc---cCCcc--EECCHHHHhhhcccccEEEEEcCCHH
Confidence            47899999999998888765   4899999999775421  111   23665  66666655432 2468888888653 


Q ss_pred             ccHHHHHHHHc
Q 017143           86 THYQILMDIIN   96 (376)
Q Consensus        86 ~h~~~~~~al~   96 (376)
                      .+.++...+.+
T Consensus        71 ~~~~i~~~l~~   81 (201)
T TIGR03570        71 LRRRLFEKLKA   81 (201)
T ss_pred             HHHHHHHHHHh
Confidence            34444444444

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.70  E-value=0.38  Score=46.87  Aligned_cols=94  Identities=17%  Similarity=0.126  Sum_probs=54.9

Q ss_pred             CCCCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEE
Q 017143            1 MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         1 m~~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      |.+...-||+|+|+|..|...+..|. .   +.+++ |+|..+.......++.   ... .......+.+.  ++|+|++
T Consensus         1 ~~~~~~~~v~v~G~G~sG~a~~~~L~-~---g~~v~-v~D~~~~~~~~~~~~~---~~~-~~~~~~~~~~~--~~d~vV~   69 (454)
T PRK01368          1 MNSHTKQKIGVFGLGKTGISVYEELQ-N---KYDVI-VYDDLKANRDIFEELY---SKN-AIAALSDSRWQ--NLDKIVL   69 (454)
T ss_pred             CcCCCCCEEEEEeecHHHHHHHHHHh-C---CCEEE-EECCCCCchHHHHhhh---cCc-eeccCChhHhh--CCCEEEE
Confidence            55555568999999999988777665 2   56755 6885443221222211   111 01122234454  3787766


Q ss_pred             eCCCCccHHHHHHHHcCCCCCeEEEec
Q 017143           81 STPNMTHYQILMDIINHPKPHHVLVEK  107 (376)
Q Consensus        81 ~t~~~~h~~~~~~al~~~~g~~Vl~EK  107 (376)
                      ...-....+.+.+|.+  +|++|+.|-
T Consensus        70 SPgI~~~~p~~~~a~~--~gi~v~~e~   94 (454)
T PRK01368         70 SPGIPLTHEIVKIAKN--FNIPITSDI   94 (454)
T ss_pred             CCCCCCCCHHHHHHHH--CCCceecHH
Confidence            5544445567778888  888887653

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=93.65  E-value=0.43  Score=36.64  Aligned_cols=100  Identities=18%  Similarity=0.239  Sum_probs=58.6

Q ss_pred             EEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC---CHHHHhhC--CCCCEEEEeCC
Q 017143            9 YGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP---GHQELLDS--GLCDVVVVSTP   83 (376)
Q Consensus         9 v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~--~~~D~V~i~t~   83 (376)
                      |.|+|+|.+|...+..|.+.   +.+++ +.|.+++   ..+++.++ +++ -.+.   +.+.+-+.  .+.+.|+++++
T Consensus         1 vvI~G~g~~~~~i~~~L~~~---~~~vv-vid~d~~---~~~~~~~~-~~~-~i~gd~~~~~~l~~a~i~~a~~vv~~~~   71 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEG---GIDVV-VIDRDPE---RVEELREE-GVE-VIYGDATDPEVLERAGIEKADAVVILTD   71 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHT---TSEEE-EEESSHH---HHHHHHHT-TSE-EEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred             eEEEcCCHHHHHHHHHHHhC---CCEEE-EEECCcH---HHHHHHhc-ccc-cccccchhhhHHhhcCccccCEEEEccC
Confidence            57999999999999888884   56666 5688887   44454433 444 2222   33333321  35899999999


Q ss_pred             CCccHHHHHHHHcC-CCCCeEEEecCCCCCHHHHHHHH
Q 017143           84 NMTHYQILMDIINH-PKPHHVLVEKPLCTTVADCKKVV  120 (376)
Q Consensus        84 ~~~h~~~~~~al~~-~~g~~Vl~EKP~a~~~~e~~~l~  120 (376)
                      +..---.+...++. +...+|++.   +.+.+..+.|.
T Consensus        72 ~d~~n~~~~~~~r~~~~~~~ii~~---~~~~~~~~~l~  106 (116)
T PF02254_consen   72 DDEENLLIALLARELNPDIRIIAR---VNDPENAELLR  106 (116)
T ss_dssp             SHHHHHHHHHHHHHHTTTSEEEEE---ESSHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCeEEEE---ECCHHHHHHHH
Confidence            86443333333331 134566654   33555544443

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=93.61  E-value=0.29  Score=45.80  Aligned_cols=146  Identities=12%  Similarity=0.151  Sum_probs=86.8

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhc-CCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHH--HhhCCCCCEEEEeC
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLR-SQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQE--LLDSGLCDVVVVST   82 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~-~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~D~V~i~t   82 (376)
                      ++|||||+ |..|+..+..|...+ =+..++..+.+.....  +...+.   +.. ....+.++  .+  .++|+|+.|.
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g--~~~~f~---~~~-~~v~~~~~~~~~--~~vDivffa~   72 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQ--AAPSFG---GTT-GTLQDAFDIDAL--KALDIIITCQ   72 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCC--CcCCCC---CCc-ceEEcCcccccc--cCCCEEEEcC
Confidence            47999995 989999999888552 1334445444432210  111110   111 11122222  23  3499999999


Q ss_pred             CCCccHHHHHHHHcCCCCCe-EEEec----------CCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHH
Q 017143           83 PNMTHYQILMDIINHPKPHH-VLVEK----------PLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVK  151 (376)
Q Consensus        83 ~~~~h~~~~~~al~~~~g~~-Vl~EK----------P~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~  151 (376)
                      +.....+++.++.+  +|.. +.++.          |+-...--...|.. . .+.|++-..+.|+--...+..++.+.+
T Consensus        73 g~~~s~~~~p~~~~--aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~-~-~~~gi~~ianPNCst~~l~~aL~pL~~  148 (366)
T TIGR01745        73 GGDYTNEIYPKLRE--SGWQGYWIDAASSLRMKDDAVIILDPVNQDVITD-G-LNNGIRTFVGGNCTVSLMLMSLGGLFA  148 (366)
T ss_pred             CHHHHHHHHHHHHh--CCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHh-H-HhCCcCeEECcCHHHHHHHHHHHHHHh
Confidence            99999999999999  8863 44543          33221111122333 2 223654356788888888888999988


Q ss_pred             cCCCCceEEEEEe
Q 017143          152 SGSIGQVKMVAIR  164 (376)
Q Consensus       152 ~g~iG~i~~~~~~  164 (376)
                      ...|-++.....+
T Consensus       149 ~~~i~~v~VsTyQ  161 (366)
T TIGR01745       149 NDLVEWVSVATYQ  161 (366)
T ss_pred             ccCccEEEEEech
Confidence            7777777666553

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.57  E-value=0.46  Score=46.38  Aligned_cols=86  Identities=19%  Similarity=0.075  Sum_probs=52.0

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC-CC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP-NM   85 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~-~~   85 (376)
                      .||.|||+|..|...+..|.+.   +.+|. ++|..+...   .++ ++.|+.  .+..-.+-+.  ++|+|+++.. +.
T Consensus        10 ~~i~viG~G~~G~~~a~~l~~~---G~~v~-~~D~~~~~~---~~l-~~~g~~--~~~~~~~~~~--~~d~vv~sp~i~~   77 (460)
T PRK01390         10 KTVAVFGLGGSGLATARALVAG---GAEVI-AWDDNPASR---AKA-AAAGIT--TADLRTADWS--GFAALVLSPGVPL   77 (460)
T ss_pred             CEEEEEeecHhHHHHHHHHHHC---CCEEE-EECCChhhH---HHH-HhcCcc--ccCCChhHHc--CCCEEEECCCCCc
Confidence            4899999999998765556554   77755 588664422   223 245765  3221122333  4797766442 22


Q ss_pred             ccH---HHHHHHHcCCCCCeEEEe
Q 017143           86 THY---QILMDIINHPKPHHVLVE  106 (376)
Q Consensus        86 ~h~---~~~~~al~~~~g~~Vl~E  106 (376)
                      .|.   ..+..|.+  +|++|+-+
T Consensus        78 ~~~~~~~~v~~a~~--~gi~i~~~   99 (460)
T PRK01390         78 THPKPHWVVDLARA--AGVEVIGD   99 (460)
T ss_pred             cCCcccHHHHHHHH--cCCcEEeH
Confidence            332   46778888  78888764

>COG3268 Uncharacterized conserved protein [Function unknown]

Probab=93.55  E-value=0.39  Score=43.70  Aligned_cols=148  Identities=14%  Similarity=0.135  Sum_probs=95.3

Q ss_pred             CCCCCceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC-----CHHHHhhCCC
Q 017143            1 MAANDTVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP-----GHQELLDSGL   74 (376)
Q Consensus         1 m~~~~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~   74 (376)
                      |++....-+.|.|+ |+.|...+..++..   +.+. ++..|+..   +...+.+++|.....|.     ..+++++.  
T Consensus         1 ~~~e~e~d~iiYGAtGy~G~lvae~l~~~---g~~~-aLAgRs~~---kl~~l~~~LG~~~~~~p~~~p~~~~~~~~~--   71 (382)
T COG3268           1 MPMEREYDIIIYGATGYAGGLVAEYLARE---GLTA-ALAGRSSA---KLDALRASLGPEAAVFPLGVPAALEAMASR--   71 (382)
T ss_pred             CCCCcceeEEEEccccchhHHHHHHHHHc---CCch-hhccCCHH---HHHHHHHhcCccccccCCCCHHHHHHHHhc--
Confidence            66666788999996 77888777777664   4444 78899988   56677777776544443     35677766  


Q ss_pred             CCEEEEeCCCCcc--HHHHHHHHcCCCCCeEEE---ecCCCCCHHHHHHH-HHHHHhCCCeEEEEeeccccCHH---HHH
Q 017143           75 CDVVVVSTPNMTH--YQILMDIINHPKPHHVLV---EKPLCTTVADCKKV-VDAARKRPDILVQVGLEYRYMPP---VAK  145 (376)
Q Consensus        75 ~D~V~i~t~~~~h--~~~~~~al~~~~g~~Vl~---EKP~a~~~~e~~~l-~~~a~~~~~~~~~v~~~~r~~p~---~~~  145 (376)
                      .++|+-|.-|..|  .+++..|++  +|.|-+=   |-++.   +.+..+ -+.| ++.|+.+..++-+---|.   +..
T Consensus        72 ~~VVlncvGPyt~~g~plv~aC~~--~GTdY~DiTGEi~~f---e~~i~~yh~~A-~~~Ga~Ii~~cGFDsIPsDl~v~~  145 (382)
T COG3268          72 TQVVLNCVGPYTRYGEPLVAACAA--AGTDYADITGEIMFF---ENSIDLYHAQA-ADAGARIIPGCGFDSIPSDLGVYA  145 (382)
T ss_pred             ceEEEeccccccccccHHHHHHHH--hCCCeeeccccHHHH---HHHHHHHHHHH-HhcCCEEeccCCCCcCccchHHHH
Confidence            8999999999766  466777888  7877431   44433   223334 3345 445877776655554442   445


Q ss_pred             HHHHHHcCCCCceEEEEE
Q 017143          146 LIQIVKSGSIGQVKMVAI  163 (376)
Q Consensus       146 ~k~~i~~g~iG~i~~~~~  163 (376)
                      +++......+|++...+.
T Consensus       146 l~~~~~~d~~~~~~~t~l  163 (382)
T COG3268         146 LLKQALPDGTEELIATHL  163 (382)
T ss_pred             HHHhhCcccccchhhhhe
Confidence            555554455677654443

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=93.55  E-value=2.3  Score=39.71  Aligned_cols=131  Identities=12%  Similarity=0.079  Sum_probs=75.1

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC-------CHHHHhhC----CCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP-------GHQELLDS----GLC   75 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~----~~~   75 (376)
                      -+|.|+|+|.+|...+...+..   +.++++ .++++++++.    ++++|.. .+++       ++.+.+.+    ..+
T Consensus       168 ~~VlV~G~G~vG~~a~~~a~~~---G~~vi~-~~~~~~~~~~----~~~~Ga~-~~i~~~~~~~~~~~~~~~~~t~~~g~  238 (349)
T TIGR03201       168 DLVIVIGAGGVGGYMVQTAKAM---GAAVVA-IDIDPEKLEM----MKGFGAD-LTLNPKDKSAREVKKLIKAFAKARGL  238 (349)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc---CCeEEE-EcCCHHHHHH----HHHhCCc-eEecCccccHHHHHHHHHhhcccCCC
Confidence            4799999999999877666665   667664 5777775443    3455654 2221       12222221    123


Q ss_pred             ----CEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCC---CCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHH
Q 017143           76 ----DVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPL---CTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQ  148 (376)
Q Consensus        76 ----D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~---a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~  148 (376)
                          |+|+.++........+.++++.+ |+-|++--+.   ..+.      .... .+ +..+.-.+... ...+..+-+
T Consensus       239 d~~~d~v~d~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~------~~~~-~~-~~~~~g~~~~~-~~~~~~~~~  308 (349)
T TIGR03201       239 RSTGWKIFECSGSKPGQESALSLLSHG-GTLVVVGYTMAKTEYRL------SNLM-AF-HARALGNWGCP-PDRYPAALD  308 (349)
T ss_pred             CCCcCEEEECCCChHHHHHHHHHHhcC-CeEEEECcCCCCcccCH------HHHh-hc-ccEEEEEecCC-HHHHHHHHH
Confidence                47888988777777888889753 7666664432   2222      2222 22 22332222111 235677788


Q ss_pred             HHHcCCCC
Q 017143          149 IVKSGSIG  156 (376)
Q Consensus       149 ~i~~g~iG  156 (376)
                      ++++|.|-
T Consensus       309 ~i~~g~i~  316 (349)
T TIGR03201       309 LVLDGKIQ  316 (349)
T ss_pred             HHHcCCCC
Confidence            88888773

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=93.52  E-value=2.2  Score=37.92  Aligned_cols=110  Identities=14%  Similarity=0.140  Sum_probs=62.7

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCC----------ChhhHHHHHHHHHhcC--CC--C-----CccCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADP----------HLQSRQQALKLANAFD--WP--L-----KVFPG   65 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~----------~~~~~~~~~~~~~~~~--~~--~-----~~~~~   65 (376)
                      +..||+|-|.|.+|...+..|.+.   +.+|++|+|.          |.+.+....+...+.+  +.  .     ..+-+
T Consensus        37 ~g~~vaIqGfGnVG~~~a~~L~e~---GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~  113 (254)
T cd05313          37 KGKRVAISGSGNVAQYAAEKLLEL---GAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFE  113 (254)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeC
Confidence            347999999999999887777764   8999999993          2222211111111111  00  0     01124


Q ss_pred             HHHHhhCCCCCEEEEeCC-CCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHH
Q 017143           66 HQELLDSGLCDVVVVSTP-NMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVV  120 (376)
Q Consensus        66 ~~~~l~~~~~D~V~i~t~-~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~  120 (376)
                      -++++.. ++|+.+=|.- +.-+.+-+.+..+  .+..+++|--=.....++.+++
T Consensus       114 ~~~~~~~-~~DIliPcAl~~~I~~~na~~i~~--~~ak~I~EgAN~p~t~~a~~~L  166 (254)
T cd05313         114 GKKPWEV-PCDIAFPCATQNEVDAEDAKLLVK--NGCKYVAEGANMPCTAEAIEVF  166 (254)
T ss_pred             CcchhcC-CCcEEEeccccccCCHHHHHHHHH--cCCEEEEeCCCCCCCHHHHHHH
Confidence            5566665 4887776544 3466666666655  4556777753322223555443

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.44  E-value=0.37  Score=47.20  Aligned_cols=90  Identities=16%  Similarity=0.034  Sum_probs=55.5

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChh-hHHHHHHHHHhcCCCCCcc-CCHHHHhhCCCCCEEEEeCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQ-SRQQALKLANAFDWPLKVF-PGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      -||+|+|+|..|...+..|.+.   +.+++ ++|.++. ......++.+  ++. ..+ ..-.+.+.  ++|+|+++..-
T Consensus         9 ~~v~v~G~G~sG~~~~~~l~~~---g~~v~-~~d~~~~~~~~~~~~l~~--~~~-~~~~~~~~~~~~--~~d~vV~SpgI   79 (468)
T PRK04690          9 RRVALWGWGREGRAAYRALRAH---LPAQA-LTLFCNAVEAREVGALAD--AAL-LVETEASAQRLA--AFDVVVKSPGI   79 (468)
T ss_pred             CEEEEEccchhhHHHHHHHHHc---CCEEE-EEcCCCcccchHHHHHhh--cCE-EEeCCCChHHcc--CCCEEEECCCC
Confidence            4899999999999888877775   78866 5775432 2122233432  222 122 22234554  38987665544


Q ss_pred             CccHHHHHHHHcCCCCCeEEEec
Q 017143           85 MTHYQILMDIINHPKPHHVLVEK  107 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~~Vl~EK  107 (376)
                      ....+...+|.+  +|++|+.|-
T Consensus        80 ~~~~p~~~~a~~--~~i~i~~~~  100 (468)
T PRK04690         80 SPYRPEALAAAA--RGTPFIGGT  100 (468)
T ss_pred             CCCCHHHHHHHH--cCCcEEEHH
Confidence            444567778888  889988653

>PRK14852 hypothetical protein; Provisional

Probab=93.37  E-value=0.6  Score=49.08  Aligned_cols=97  Identities=16%  Similarity=0.226  Sum_probs=59.2

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh-------------------hhHHHHHHHHHhcCC--CCCcc
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL-------------------QSRQQALKLANAFDW--PLKVF   63 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~-------------------~~~~~~~~~~~~~~~--~~~~~   63 (376)
                      +.-||+|||+|..|..++..|...   ++.-+.++|.|.                   .+.+.+++..++.+-  .+..+
T Consensus       331 ~~srVlVvGlGGlGs~ia~~LAra---GVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~  407 (989)
T PRK14852        331 LRSRVAIAGLGGVGGIHLMTLART---GIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSF  407 (989)
T ss_pred             hcCcEEEECCcHHHHHHHHHHHHc---CCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEE
Confidence            357999999999999999998886   444455555532                   122222333333331  12222


Q ss_pred             ------CCHHHHhhCCCCCEEEEeCCCC---ccHHHHHHHHcCCCCCeEEEecC
Q 017143           64 ------PGHQELLDSGLCDVVVVSTPNM---THYQILMDIINHPKPHHVLVEKP  108 (376)
Q Consensus        64 ------~~~~~~l~~~~~D~V~i~t~~~---~h~~~~~~al~~~~g~~Vl~EKP  108 (376)
                            ++.+++++.  +|+|+-|+.+.   ....+...|.+  .|++++..-+
T Consensus       408 ~~~I~~en~~~fl~~--~DiVVDa~D~~~~~~rr~l~~~c~~--~~IP~I~ag~  457 (989)
T PRK14852        408 PEGVAAETIDAFLKD--VDLLVDGIDFFALDIRRRLFNRALE--LGIPVITAGP  457 (989)
T ss_pred             ecCCCHHHHHHHhhC--CCEEEECCCCccHHHHHHHHHHHHH--cCCCEEEeec
Confidence                  346667754  88888887652   23455556777  7788776554

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=93.35  E-value=0.25  Score=44.38  Aligned_cols=71  Identities=15%  Similarity=0.202  Sum_probs=44.3

Q ss_pred             EEEEeC-ChhhHHHHHHhhhhcCC--CcEEEEEeCCChhhHHHHH----HHHHhc-CCCCCccCCHHHHhhCCCCCEEEE
Q 017143            9 YGIIGM-GMMGREHFINLHHLRSQ--GVSVVCIADPHLQSRQQAL----KLANAF-DWPLKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         9 v~iiG~-G~~g~~~~~~~~~~~~~--~~~~~~v~d~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      |+|||+ |.+|...+..+...  +  ...-+.++|+++++++...    ..+..+ ...+...+|..+.+++  .|+|++
T Consensus         1 I~IIGagG~vG~~ia~~l~~~--~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~--aDiVv~   76 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADG--SVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKD--ADVVII   76 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhC--CCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCC--CCEEEE
Confidence            689999 98998887777765  3  2233557899886543221    122222 2223445676677766  899999


Q ss_pred             eCC
Q 017143           81 STP   83 (376)
Q Consensus        81 ~t~   83 (376)
                      +.-
T Consensus        77 t~~   79 (263)
T cd00650          77 TAG   79 (263)
T ss_pred             CCC
Confidence            663

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK12854 glucose-6-phosphate 1-dehydrogenase; Provisional

Probab=93.26  E-value=1.1  Score=43.47  Aligned_cols=120  Identities=15%  Similarity=0.199  Sum_probs=70.9

Q ss_pred             CceeEEEEeC-ChhhH-HHHHHhhhhc-----CCCcEEEEEeCCChhhHH---HHHHHHHhc-C--------------CC
Q 017143            5 DTVKYGIIGM-GMMGR-EHFINLHHLR-----SQGVSVVCIADPHLQSRQ---QALKLANAF-D--------------WP   59 (376)
Q Consensus         5 ~~~~v~iiG~-G~~g~-~~~~~~~~~~-----~~~~~~~~v~d~~~~~~~---~~~~~~~~~-~--------------~~   59 (376)
                      .+.-+.|+|+ |-.++ ..+|+|.++.     ++++.|+|+.-++-+..+   ...+..+++ +              +.
T Consensus        10 ~~~~~VIFGAtGDLa~RKL~PaL~~L~~~~~lp~~~~IiG~aR~~~~~e~fr~~v~~~l~~~~~~~~~~~~~~~F~~~~~   89 (484)
T PRK12854         10 PPTVFVLFGATGDLAKRKLLPGLFHLARAGLLPPDWRIVGTGRGDVSAEAFREHARDALDEFGARKLDDGEWARFAKRLR   89 (484)
T ss_pred             CCeEEEEeCCchHHhhhhHHHHHHHHHHcCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHhccCccCHHHHHHHHhcCE
Confidence            4688899995 66665 5788876662     368999998754322111   111111111 0              00


Q ss_pred             --CCccCC-----HHHHhhCC-------CCCEEEEeCCCCccHHHHHHHHcCC--CCCeEEEecCCCCCHHHHHHHHHHH
Q 017143           60 --LKVFPG-----HQELLDSG-------LCDVVVVSTPNMTHYQILMDIINHP--KPHHVLVEKPLCTTVADCKKVVDAA  123 (376)
Q Consensus        60 --~~~~~~-----~~~~l~~~-------~~D~V~i~t~~~~h~~~~~~al~~~--~g~~Vl~EKP~a~~~~e~~~l~~~a  123 (376)
                        ..-|++     +.+.++..       .--+.++++||+.-..++...-+.|  ...-|.+|||++.+.+.|++|-+..
T Consensus        90 Y~~~d~~~~~~~~L~~~l~~~~~~~~~~~n~ifYLA~PP~~f~~i~~~l~~~~l~~~~RiViEKPFG~Dl~SA~~Ln~~l  169 (484)
T PRK12854         90 YVPGGFLSAGPGALAAAVAAARAELGGDARLVHYLAVPPSAFLDVTRALGEAGLAEGSRVVMEKPFGTDLASAEALNAAV  169 (484)
T ss_pred             EEecCCCChHHHHHHHHHHHHhhhcCCCCceEEEEecCHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence              001222     22333321       1237899999988666665544421  1357999999999999999999877


Q ss_pred             H
Q 017143          124 R  124 (376)
Q Consensus       124 ~  124 (376)
                      .
T Consensus       170 ~  170 (484)
T PRK12854        170 H  170 (484)
T ss_pred             H
Confidence            3

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=93.26  E-value=0.44  Score=35.94  Aligned_cols=84  Identities=19%  Similarity=0.122  Sum_probs=52.2

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      +..+|.|||.|..|..-+..|.+.   +.+++-+.... +   ..+   .  .+. ..-..+++.+..  .|+|+++|++
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~---gA~v~vis~~~-~---~~~---~--~i~-~~~~~~~~~l~~--~~lV~~at~d   70 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEA---GAKVTVISPEI-E---FSE---G--LIQ-LIRREFEEDLDG--ADLVFAATDD   70 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCC---TBEEEEEESSE-H---HHH---T--SCE-EEESS-GGGCTT--ESEEEE-SS-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC---CCEEEEECCch-h---hhh---h--HHH-HHhhhHHHHHhh--heEEEecCCC
Confidence            457999999999999888887775   78888655432 1   122   1  121 111334445544  8999999987


Q ss_pred             C-ccHHHHHHHHcCCCCCeEEE
Q 017143           85 M-THYQILMDIINHPKPHHVLV  105 (376)
Q Consensus        85 ~-~h~~~~~~al~~~~g~~Vl~  105 (376)
                      . ....+...|-+  +|+.|-+
T Consensus        71 ~~~n~~i~~~a~~--~~i~vn~   90 (103)
T PF13241_consen   71 PELNEAIYADARA--RGILVNV   90 (103)
T ss_dssp             HHHHHHHHHHHHH--TTSEEEE
T ss_pred             HHHHHHHHHHHhh--CCEEEEE
Confidence            4 56666666766  7777765

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.19  E-value=0.57  Score=45.57  Aligned_cols=95  Identities=16%  Similarity=0.149  Sum_probs=57.9

Q ss_pred             CCCCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh-cCCCCCcc-CCH-HHHhhCCCCCE
Q 017143            1 MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA-FDWPLKVF-PGH-QELLDSGLCDV   77 (376)
Q Consensus         1 m~~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~-~~~~~~~~-~~~-~~~l~~~~~D~   77 (376)
                      |... ..+|.|+|.|..|...+..|++.   +.++++ +|..+... ...++.+. .|+.  .+ ... ++.+.  ++|+
T Consensus         1 ~~~~-~~~~~v~G~g~~G~~~a~~l~~~---g~~v~~-~d~~~~~~-~~~~l~~~~~gi~--~~~g~~~~~~~~--~~d~   70 (445)
T PRK04308          1 MTFQ-NKKILVAGLGGTGISMIAYLRKN---GAEVAA-YDAELKPE-RVAQIGKMFDGLV--FYTGRLKDALDN--GFDI   70 (445)
T ss_pred             CCCC-CCEEEEECCCHHHHHHHHHHHHC---CCEEEE-EeCCCCch-hHHHHhhccCCcE--EEeCCCCHHHHh--CCCE
Confidence            5433 35899999999998876666664   788774 56554421 12223221 3554  22 222 23333  4899


Q ss_pred             EEEeCCCCccHHHHHHHHcCCCCCeEEEec
Q 017143           78 VVVSTPNMTHYQILMDIINHPKPHHVLVEK  107 (376)
Q Consensus        78 V~i~t~~~~h~~~~~~al~~~~g~~Vl~EK  107 (376)
                      |+++.--....+...+|.+  +|.+|+-|-
T Consensus        71 vv~spgi~~~~p~~~~a~~--~~i~v~~~~   98 (445)
T PRK04308         71 LALSPGISERQPDIEAFKQ--NGGRVLGDI   98 (445)
T ss_pred             EEECCCCCCCCHHHHHHHH--cCCcEEEhH
Confidence            8887765555577888888  889987543

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.19  E-value=0.48  Score=45.98  Aligned_cols=89  Identities=18%  Similarity=0.206  Sum_probs=55.5

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCC-cEEEEEeCCChhhHHHHHHHHHhcCCCCCcc-CC-HHHHhhCCCCCEEEEeCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQG-VSVVCIADPHLQSRQQALKLANAFDWPLKVF-PG-HQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~-~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~l~~~~~D~V~i~t~   83 (376)
                      .||.|||+|..|..-+..+.+.  .+ ++|+ ++|..+... ..+++. + |+.  .+ .. -.+.+.  ++|+|+++.-
T Consensus         8 ~~v~viG~G~sG~s~~~~l~~~--~~~~~v~-~~D~~~~~~-~~~~l~-~-g~~--~~~g~~~~~~~~--~~d~vV~Spg   77 (438)
T PRK04663          8 KNVVVVGLGITGLSVVKHLRKY--QPQLTVK-VIDTRETPP-GQEQLP-E-DVE--LHSGGWNLEWLL--EADLVVTNPG   77 (438)
T ss_pred             ceEEEEeccHHHHHHHHHHHhc--CCCCeEE-EEeCCCCch-hHHHhh-c-CCE--EEeCCCChHHhc--cCCEEEECCC
Confidence            5799999999999888777776  44 7766 588655321 122342 3 655  32 21 223343  3897766554


Q ss_pred             CCccHHHHHHHHcCCCCCeEEEec
Q 017143           84 NMTHYQILMDIINHPKPHHVLVEK  107 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~EK  107 (376)
                      -....+...+|.+  +|++|+.|-
T Consensus        78 I~~~~p~~~~a~~--~gi~i~~~~   99 (438)
T PRK04663         78 IALATPEIQQVLA--AGIPVVGDI   99 (438)
T ss_pred             CCCCCHHHHHHHH--CCCcEEEHH
Confidence            4444466777888  889987543

>PRK06395 phosphoribosylamine--glycine ligase; Provisional

Probab=93.18  E-value=0.25  Score=47.82  Aligned_cols=90  Identities=12%  Similarity=0.116  Sum_probs=51.6

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc-CCCCCccCCHHHH---hhCCCCCEEEEe
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF-DWPLKVFPGHQEL---LDSGLCDVVVVS   81 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---l~~~~~D~V~i~   81 (376)
                      ++||.|||.|.........+++.   +.++.++......   -...++..+ .+   -..|++++   .+..++|+|++.
T Consensus         2 ~~kVLvlG~G~re~al~~~l~~~---g~~v~~~~~~~Np---g~~~~a~~~~~~---~~~d~e~l~~~~~~~~id~Vi~~   72 (435)
T PRK06395          2 TMKVMLVGSGGREDAIARAIKRS---GAILFSVIGHENP---SIKKLSKKYLFY---DEKDYDLIEDFALKNNVDIVFVG   72 (435)
T ss_pred             ceEEEEECCcHHHHHHHHHHHhC---CCeEEEEECCCCh---hhhhcccceeec---CCCCHHHHHHHHHHhCCCEEEEC
Confidence            47999999997655555566665   4677766442221   122233222 12   12455554   445679999986


Q ss_pred             CCCCccHHHHHHHHcCCCCCeEEEe
Q 017143           82 TPNMTHYQILMDIINHPKPHHVLVE  106 (376)
Q Consensus        82 t~~~~h~~~~~~al~~~~g~~Vl~E  106 (376)
                      .-...-..++.+..+  .|.+|+.-
T Consensus        73 ~d~~l~~~~~~~l~~--~Gi~v~gp   95 (435)
T PRK06395         73 PDPVLATPLVNNLLK--RGIKVASP   95 (435)
T ss_pred             CChHHHHHHHHHHHH--CCCcEECC
Confidence            443344444445566  68888753

>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase

Probab=93.05  E-value=0.86  Score=42.14  Aligned_cols=78  Identities=12%  Similarity=0.135  Sum_probs=63.1

Q ss_pred             HHHHHHHHHhcCCC--CCccCC-HHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHH
Q 017143           46 RQQALKLANAFDWP--LKVFPG-HQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDA  122 (376)
Q Consensus        46 ~~~~~~~~~~~~~~--~~~~~~-~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~  122 (376)
                      .....+.++++|++  ...|+. --+++++.++|+.=|++.+-.+.+++..+.+  .||+|++-..++ +.+|..+.++.
T Consensus        78 ~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~--~gkPvilStGma-tl~Ei~~Av~~  154 (329)
T TIGR03569        78 HRELKEYCESKGIEFLSTPFDLESADFLEDLGVPRFKIPSGEITNAPLLKKIAR--FGKPVILSTGMA-TLEEIEAAVGV  154 (329)
T ss_pred             HHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHh--cCCcEEEECCCC-CHHHHHHHHHH
Confidence            34566778889988  233332 2266777679999999999999999999999  899999999995 99999999999


Q ss_pred             HHhC
Q 017143          123 ARKR  126 (376)
Q Consensus       123 a~~~  126 (376)
                      .++.
T Consensus       155 i~~~  158 (329)
T TIGR03569       155 LRDA  158 (329)
T ss_pred             HHHc
Confidence            9554

This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.

>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]

Probab=93.01  E-value=0.73  Score=39.75  Aligned_cols=123  Identities=20%  Similarity=0.115  Sum_probs=85.3

Q ss_pred             ceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      .-||.+=| +|.-|..|.....+.   +.++|+-+.+...     -  ...+|.|  +|.+..|+.++..+|+-+|..|+
T Consensus        38 ~TkVi~QGfTGKqgTFHs~q~~eY---gTk~VgG~~pkK~-----G--t~HLG~P--VF~sV~eA~~~t~a~AsvIyVPp  105 (329)
T KOG1255|consen   38 DTKVICQGFTGKQGTFHSQQALEY---GTKVVGGVNPKKG-----G--TTHLGLP--VFNSVAEAKKETGADASVIYVPP  105 (329)
T ss_pred             CceEEEecccCCccceeHHHHHHh---CCceeeccCCCcC-----c--ccccCch--hhhhHHHHHHhhCCCceEEEeCC
Confidence            35777777 477777888777776   7888887765443     1  1246887  99999999999899999999999


Q ss_pred             CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhC-CCeEEEEeeccccCHH
Q 017143           85 MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKR-PDILVQVGLEYRYMPP  142 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~-~~~~~~v~~~~r~~p~  142 (376)
                      ..-..-+.+|++  +-.+.++---=.....+..++......+ ..+.+-.++.---+|.
T Consensus       106 p~Aa~aI~eaie--aEipLiVcITEGIPQhDMvrvk~~L~~Q~KtRLvGPNCPGII~p~  162 (329)
T KOG1255|consen  106 PFAAAAIEEAIE--AEIPLIVCITEGIPQHDMVRVKHALNSQSKTRLVGPNCPGIINPG  162 (329)
T ss_pred             hhHHHHHHHHHh--ccCCEEEEecCCCchhhHHHHHHHHhhcccceecCCCCCCccCcc
Confidence            999999999999  6677665443344555555555554332 1334444444444554

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.00  E-value=0.61  Score=45.22  Aligned_cols=89  Identities=19%  Similarity=0.170  Sum_probs=55.2

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC-C-HHHHhhCCCCCEEEEeCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP-G-HQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~l~~~~~D~V~i~t~   83 (376)
                      ..+|.|+|.|..|...+..|++   .+.++++ +|..+... ...++. + |+.  .+. + ..+.+..  .|+|+....
T Consensus         6 ~~~i~v~G~G~sG~s~~~~l~~---~G~~v~~-~D~~~~~~-~~~~l~-~-g~~--~~~~~~~~~~~~~--~d~vv~spg   74 (438)
T PRK03806          6 GKKVVIIGLGLTGLSCVDFFLA---RGVTPRV-IDTRITPP-GLDKLP-E-NVE--RHTGSLNDEWLLA--ADLIVASPG   74 (438)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHH---CCCeEEE-EcCCCCch-hHHHHh-c-CCE--EEeCCCCHHHhcC--CCEEEECCC
Confidence            3579999999999987765555   4778764 77654321 122332 2 654  221 1 2233433  686554443


Q ss_pred             CCccHHHHHHHHcCCCCCeEEEec
Q 017143           84 NMTHYQILMDIINHPKPHHVLVEK  107 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~EK  107 (376)
                      -..+.+.+.+|.+  +|.+|+.|-
T Consensus        75 i~~~~~~~~~a~~--~g~~v~~~~   96 (438)
T PRK03806         75 IALAHPSLSAAAD--AGIEIVGDI   96 (438)
T ss_pred             CCCCCHHHHHHHH--CCCeEEEHH
Confidence            3445677888899  889998874

>PRK14851 hypothetical protein; Provisional

Probab=93.00  E-value=0.63  Score=47.48  Aligned_cols=96  Identities=23%  Similarity=0.269  Sum_probs=59.1

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh-------------------hhHHHHHHHHHhcC--CCCCcc-
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL-------------------QSRQQALKLANAFD--WPLKVF-   63 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~-------------------~~~~~~~~~~~~~~--~~~~~~-   63 (376)
                      .-||+|||+|.+|..++..|...   ++.-..++|.|.                   .+.+.+++..++.+  +.+..| 
T Consensus        43 ~~~VlIvG~GGlGs~va~~Lar~---GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~  119 (679)
T PRK14851         43 EAKVAIPGMGGVGGVHLITMVRT---GIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFP  119 (679)
T ss_pred             cCeEEEECcCHHHHHHHHHHHHh---CCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEe
Confidence            57999999999999999998886   444444555432                   12222222222322  112222 


Q ss_pred             -----CCHHHHhhCCCCCEEEEeCCCCc---cHHHHHHHHcCCCCCeEEEecC
Q 017143           64 -----PGHQELLDSGLCDVVVVSTPNMT---HYQILMDIINHPKPHHVLVEKP  108 (376)
Q Consensus        64 -----~~~~~~l~~~~~D~V~i~t~~~~---h~~~~~~al~~~~g~~Vl~EKP  108 (376)
                           ++.+++++.  +|+|+-|+.+..   ...+...|.+  .++++++--|
T Consensus       120 ~~i~~~n~~~~l~~--~DvVid~~D~~~~~~r~~l~~~c~~--~~iP~i~~g~  168 (679)
T PRK14851        120 AGINADNMDAFLDG--VDVVLDGLDFFQFEIRRTLFNMARE--KGIPVITAGP  168 (679)
T ss_pred             cCCChHHHHHHHhC--CCEEEECCCCCcHHHHHHHHHHHHH--CCCCEEEeec
Confidence                 245677765  899998886532   3445666778  7899887653

>COG4566 TtrR Response regulator [Signal transduction mechanisms]

Probab=92.98  E-value=0.46  Score=39.62  Aligned_cols=77  Identities=16%  Similarity=0.226  Sum_probs=50.5

Q ss_pred             cEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCC-----------------------------CCEEEEeCC
Q 017143           33 VSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGL-----------------------------CDVVVVSTP   83 (376)
Q Consensus        33 ~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------------------------~D~V~i~t~   83 (376)
                      -.++.|+|-|.+-++.+..+-+.-|+.+..|.|-+++|....                             ++.=+|...
T Consensus         4 ~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~~~pGclllDvrMPg~sGlelq~~L~~~~~~~PVIfiT   83 (202)
T COG4566           4 EPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPLDRPGCLLLDVRMPGMSGLELQDRLAERGIRLPVIFLT   83 (202)
T ss_pred             CCeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhccCCCCCeEEEecCCCCCchHHHHHHHHhcCCCCCEEEEe
Confidence            356777777776555555566666766677888777777531                             332222222


Q ss_pred             CCccHHHHHHHHcCCCCCeEEEecCCCC
Q 017143           84 NMTHYQILMDIINHPKPHHVLVEKPLCT  111 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~EKP~a~  111 (376)
                      -+--.+++.+|++  +|-.=|+|||+..
T Consensus        84 GhgDIpmaV~AmK--~GAvDFLeKP~~~  109 (202)
T COG4566          84 GHGDIPMAVQAMK--AGAVDFLEKPFSE  109 (202)
T ss_pred             CCCChHHHHHHHH--cchhhHHhCCCch
Confidence            2344788999999  8888999999853

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=92.97  E-value=0.53  Score=42.54  Aligned_cols=90  Identities=20%  Similarity=0.208  Sum_probs=55.7

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc--CCHHHHh----hCCCCCEEEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF--PGHQELL----DSGLCDVVVV   80 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l----~~~~~D~V~i   80 (376)
                      -+|.|+|+|.+|...+..++..   +++.+.++++++++.+    +++++|.. .++  ++..+.+    ....+|+|+-
T Consensus       122 ~~VlV~G~G~vG~~~~~~ak~~---G~~~Vi~~~~~~~r~~----~a~~~Ga~-~~i~~~~~~~~~~~~~~~~g~d~vid  193 (280)
T TIGR03366       122 RRVLVVGAGMLGLTAAAAAAAA---GAARVVAADPSPDRRE----LALSFGAT-ALAEPEVLAERQGGLQNGRGVDVALE  193 (280)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc---CCCEEEEECCCHHHHH----HHHHcCCc-EecCchhhHHHHHHHhCCCCCCEEEE
Confidence            3789999999998876665554   7763334577776443    45556654 222  2222222    2235899999


Q ss_pred             eCCCCccHHHHHHHHcCCCCCeEEE
Q 017143           81 STPNMTHYQILMDIINHPKPHHVLV  105 (376)
Q Consensus        81 ~t~~~~h~~~~~~al~~~~g~~Vl~  105 (376)
                      ++....-...+.++++. .|+-|++
T Consensus       194 ~~G~~~~~~~~~~~l~~-~G~iv~~  217 (280)
T TIGR03366       194 FSGATAAVRACLESLDV-GGTAVLA  217 (280)
T ss_pred             CCCChHHHHHHHHHhcC-CCEEEEe
Confidence            88766666777888874 2555544

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=92.95  E-value=0.54  Score=38.60  Aligned_cols=75  Identities=21%  Similarity=0.174  Sum_probs=52.4

Q ss_pred             ceeEEEEeC--ChhhHHHHHHhhhhcCCCcEEEEEeCCC----h--hhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCE
Q 017143            6 TVKYGIIGM--GMMGREHFINLHHLRSQGVSVVCIADPH----L--QSRQQALKLANAFDWPLKVFPGHQELLDSGLCDV   77 (376)
Q Consensus         6 ~~~v~iiG~--G~~g~~~~~~~~~~~~~~~~~~~v~d~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~   77 (376)
                      .+||++||=  +++.+..+..+..+   +.+++.++-..    +  +-.+.+++.+.+.|..+..+++.++.++.  .|+
T Consensus         2 gl~i~~vGD~~~rv~~Sl~~~~~~~---g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~--aDv   76 (158)
T PF00185_consen    2 GLKIAYVGDGHNRVAHSLIELLAKF---GMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKG--ADV   76 (158)
T ss_dssp             TEEEEEESSTTSHHHHHHHHHHHHT---TSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT---SE
T ss_pred             CCEEEEECCCCChHHHHHHHHHHHc---CCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCC--CCE
Confidence            489999994  67888888888888   67766554333    1  12244555555556545678999999987  899


Q ss_pred             EEEeCCCC
Q 017143           78 VVVSTPNM   85 (376)
Q Consensus        78 V~i~t~~~   85 (376)
                      |+..+..+
T Consensus        77 vy~~~~~s   84 (158)
T PF00185_consen   77 VYTDRWQS   84 (158)
T ss_dssp             EEEESSSC
T ss_pred             EEEcCccc
Confidence            88887763

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=92.94  E-value=2.7  Score=40.32  Aligned_cols=94  Identities=18%  Similarity=0.064  Sum_probs=54.4

Q ss_pred             eEEEEe-CChhhHHHHHHhhhhcCCCc-EEEEEeCCChhhHHHHHHHH-Hhc---CCCCCc--c---CCHHHHh----hC
Q 017143            8 KYGIIG-MGMMGREHFINLHHLRSQGV-SVVCIADPHLQSRQQALKLA-NAF---DWPLKV--F---PGHQELL----DS   72 (376)
Q Consensus         8 ~v~iiG-~G~~g~~~~~~~~~~~~~~~-~~~~v~d~~~~~~~~~~~~~-~~~---~~~~~~--~---~~~~~~l----~~   72 (376)
                      +|.|+| +|.+|...+..++... -+. +++ ++++++++++.++++. ...   |.....  +   +++.+.+    ..
T Consensus       178 ~VlV~G~~G~vG~~aiq~ak~~G-~g~~~Vi-~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~g  255 (410)
T cd08238         178 NTAILGGAGPMGLMAIDYAIHGP-IGPSLLV-VTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELTGG  255 (410)
T ss_pred             EEEEEeCCCHHHHHHHHHHHhcc-cCCceEE-EEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHhCC
Confidence            789998 6999998776655541 123 455 5688887655554430 000   221001  1   2343332    22


Q ss_pred             CCCCEEEEeCCCCccHHHHHHHHcCCCCCeEE
Q 017143           73 GLCDVVVVSTPNMTHYQILMDIINHPKPHHVL  104 (376)
Q Consensus        73 ~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl  104 (376)
                      ..+|+|+.++........+.++++.+ |+-|+
T Consensus       256 ~g~D~vid~~g~~~~~~~a~~~l~~~-G~~v~  286 (410)
T cd08238         256 QGFDDVFVFVPVPELVEEADTLLAPD-GCLNF  286 (410)
T ss_pred             CCCCEEEEcCCCHHHHHHHHHHhccC-CeEEE
Confidence            35899999987766777788888732 44443

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>TIGR03586 PseI pseudaminic acid synthase

Probab=92.91  E-value=1.4  Score=40.81  Aligned_cols=78  Identities=12%  Similarity=0.198  Sum_probs=62.1

Q ss_pred             HHHHHHHhcCCC--CCccCCH-HHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHH
Q 017143           48 QALKLANAFDWP--LKVFPGH-QELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAAR  124 (376)
Q Consensus        48 ~~~~~~~~~~~~--~~~~~~~-~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~  124 (376)
                      ...+.++++|++  ...|+.- -+++.+-++|++=|++.+-.+.+++..+.+  .||+|++-..++ +.+|....++..+
T Consensus        81 ~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~--~gkPvilstG~~-t~~Ei~~Av~~i~  157 (327)
T TIGR03586        81 ELFERAKELGLTIFSSPFDETAVDFLESLDVPAYKIASFEITDLPLIRYVAK--TGKPIIMSTGIA-TLEEIQEAVEACR  157 (327)
T ss_pred             HHHHHHHHhCCcEEEccCCHHHHHHHHHcCCCEEEECCccccCHHHHHHHHh--cCCcEEEECCCC-CHHHHHHHHHHHH
Confidence            455668889988  2444421 255666679999999999999999999999  899999999995 9999999999985


Q ss_pred             hCCC
Q 017143          125 KRPD  128 (376)
Q Consensus       125 ~~~~  128 (376)
                      +.++
T Consensus       158 ~~g~  161 (327)
T TIGR03586       158 EAGC  161 (327)
T ss_pred             HCCC
Confidence            5433

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.81  E-value=0.65  Score=45.34  Aligned_cols=88  Identities=25%  Similarity=0.207  Sum_probs=54.1

Q ss_pred             eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH-HHH-HHHHHhcCCCCCccC--CHH-----HHhhCCCCCEE
Q 017143            8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSR-QQA-LKLANAFDWPLKVFP--GHQ-----ELLDSGLCDVV   78 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~-~~~~~~~~~~~~~~~--~~~-----~~l~~~~~D~V   78 (376)
                      ||.|||+|..|...+..+.+   .+.+++ ++|..+... ... ..+ +..|+.  .+.  +.+     +.+.+  +|+|
T Consensus         2 ~v~viG~G~sG~s~a~~l~~---~G~~V~-~~D~~~~~~~~~~~~~l-~~~gi~--~~~g~~~~~~~~~~~~~~--~d~v   72 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKA---QGWEVV-VSDRNDSPELLERQQEL-EQEGIT--VKLGKPLELESFQPWLDQ--PDLV   72 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHH---CCCEEE-EECCCCchhhHHHHHHH-HHcCCE--EEECCccchhhhhHHhhc--CCEE
Confidence            79999999999986655555   478765 678765421 111 123 234654  221  111     34443  8988


Q ss_pred             EEeCCCCccHHHHHHHHcCCCCCeEEEe
Q 017143           79 VVSTPNMTHYQILMDIINHPKPHHVLVE  106 (376)
Q Consensus        79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~E  106 (376)
                      +++..-....+...+|.+  .|.+|+-+
T Consensus        73 v~s~gi~~~~~~~~~a~~--~~i~v~~~   98 (459)
T PRK02705         73 VVSPGIPWDHPTLVELRE--RGIEVIGE   98 (459)
T ss_pred             EECCCCCCCCHHHHHHHH--cCCcEEEh
Confidence            885554455577777888  78888754

>PRK06153 hypothetical protein; Provisional

Probab=92.81  E-value=0.89  Score=42.72  Aligned_cols=35  Identities=20%  Similarity=0.176  Sum_probs=28.8

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL   43 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~   43 (376)
                      ..||+|||+|..|...+..|++.   ++.=+.++|.|.
T Consensus       176 ~~~VaIVG~GG~GS~Va~~LAR~---GVgeI~LVD~D~  210 (393)
T PRK06153        176 GQRIAIIGLGGTGSYILDLVAKT---PVREIHLFDGDD  210 (393)
T ss_pred             hCcEEEEcCCccHHHHHHHHHHc---CCCEEEEECCCE
Confidence            46999999999999999999997   454555788774

>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]

Probab=92.81  E-value=0.86  Score=42.95  Aligned_cols=142  Identities=17%  Similarity=0.090  Sum_probs=78.0

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC-CccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL-KVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      |||.|||.|.  +.|.-+++-.+.+.+.-+.++-.++-.   +. ...-.++++ ..+..+.++..+.++|+|+|.--..
T Consensus         1 mkVLviGsGg--REHAiA~~la~s~~v~~~~~apgN~G~---a~-~~~~~~~~~~~~~~~lv~fA~~~~idl~vVGPE~p   74 (428)
T COG0151           1 MKVLVIGSGG--REHALAWKLAQSPLVLYVYVAPGNPGT---AL-EAYLVNIEIDTDHEALVAFAKEKNVDLVVVGPEAP   74 (428)
T ss_pred             CeEEEEcCCc--hHHHHHHHHhcCCceeEEEEeCCCCcc---ch-hhhhccCccccCHHHHHHHHHHcCCCEEEECCcHH
Confidence            6899999995  555555433322666666666555542   11 111123332 1233444555567899999876555


Q ss_pred             ccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEE
Q 017143           86 THYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMV  161 (376)
Q Consensus        86 ~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~  161 (376)
                      +-.-++-..-+  +|.+||==+-.+.-++..+...+.--++++++  ...-..|. ....++..|++  .|.+.-|
T Consensus        75 L~~GvvD~l~~--~Gi~vFGPsk~AA~lE~SK~faK~fm~k~~IP--ta~y~~f~-~~e~a~ayi~~--~g~piVV  143 (428)
T COG0151          75 LVAGVVDALRA--AGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIP--TAEYEVFT-DPEEAKAYIDE--KGAPIVV  143 (428)
T ss_pred             HhhhhHHHHHH--CCCceeCcCHHHHHHHhhHHHHHHHHHHcCCC--cccccccC-CHHHHHHHHHH--cCCCEEE
Confidence            55555555556  78888755444445555555444444555666  33333344 56666666663  5554333

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.73  E-value=0.54  Score=45.74  Aligned_cols=91  Identities=20%  Similarity=0.120  Sum_probs=53.7

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh-cCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA-FDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      =-|+|||+|..|...+..|.+   .+.+++ ++|..+... ...++.++ .|+++..-..-.+.+.+  +|+|+++.--.
T Consensus         7 ~~~~v~G~G~sG~s~a~~L~~---~G~~v~-~~D~~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~--~d~vV~sp~i~   79 (448)
T PRK03803          7 GLHIVVGLGKTGLSVVRFLAR---QGIPFA-VMDSREQPP-GLDTLAREFPDVELRCGGFDCELLVQ--ASEIIISPGLA   79 (448)
T ss_pred             CeEEEEeecHhHHHHHHHHHh---CCCeEE-EEeCCCCch-hHHHHHhhcCCcEEEeCCCChHHhcC--CCEEEECCCCC
Confidence            468999999999985555555   478866 588654321 22334433 36651111112344543  78776655434


Q ss_pred             ccHHHHHHHHcCCCCCeEEEe
Q 017143           86 THYQILMDIINHPKPHHVLVE  106 (376)
Q Consensus        86 ~h~~~~~~al~~~~g~~Vl~E  106 (376)
                      ...+...+|.+  +|++|+-|
T Consensus        80 ~~~p~~~~a~~--~~i~i~~~   98 (448)
T PRK03803         80 LDTPALRAAAA--MGIEVIGD   98 (448)
T ss_pred             CCCHHHHHHHH--CCCcEEEH
Confidence            44456677778  78888764

>PTZ00309 glucose-6-phosphate 1-dehydrogenase; Provisional

Probab=92.65  E-value=0.97  Score=44.54  Aligned_cols=118  Identities=14%  Similarity=0.223  Sum_probs=68.5

Q ss_pred             ceeEEEEeC-ChhhH-HHHHHhhhhc-----CCCcEEEEEeCCChhhH-HH----HHH--------------HHHhc---
Q 017143            6 TVKYGIIGM-GMMGR-EHFINLHHLR-----SQGVSVVCIADPHLQSR-QQ----ALK--------------LANAF---   56 (376)
Q Consensus         6 ~~~v~iiG~-G~~g~-~~~~~~~~~~-----~~~~~~~~v~d~~~~~~-~~----~~~--------------~~~~~---   56 (376)
                      +..+.|+|+ |-.++ ..+|+|.++.     ++++.|+|+.-.+-+.. +.    ..+              |.++.   
T Consensus        54 ~~~iVIFGATGDLA~RKL~PAL~~L~~~g~lp~~~~IiG~aR~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~F~~~~~Y~  133 (542)
T PTZ00309         54 ALTIIVLGASGDLAKKKTFPALFQLYCEGLLPSEVNIVGYARSKMSDVERWKKETLARFFKRLDDRECHLEQFLKHISYI  133 (542)
T ss_pred             CeEEEEecCccHHhhhhHHHHHHHHHHcCCCCCCCEEEEEeCCCCCcHHHHHHHHHHHHhhccCCcHHHHHHHHhcCEEE
Confidence            578899995 66665 5788876652     36899999873322221 11    111              11110   


Q ss_pred             --CCC-CCccCCHHHHhhCC----------CCCEEEEeCCCCccHHHHHHHHcCC---CC-CeEEEecCCCCCHHHHHHH
Q 017143           57 --DWP-LKVFPGHQELLDSG----------LCDVVVVSTPNMTHYQILMDIINHP---KP-HHVLVEKPLCTTVADCKKV  119 (376)
Q Consensus        57 --~~~-~~~~~~~~~~l~~~----------~~D~V~i~t~~~~h~~~~~~al~~~---~g-~~Vl~EKP~a~~~~e~~~l  119 (376)
                        ++. ...|..+.+.+..-          .--+.++++||+.=..++...-++|   .| .-|.+|||++.+.+.|++|
T Consensus       134 ~~d~~~~~~y~~L~~~l~~~e~~~~~~~~~~nrlfYLAlPP~~f~~i~~~L~~~~l~~~G~~RiViEKPFG~Dl~SA~~L  213 (542)
T PTZ00309        134 SGSYDEDEDFKRLNKLIERMEEAFQGPEKGGNRLFYLALPPSVFASVCEGIHRGCMSKNGWVRVIVEKPFGRDLESSEEL  213 (542)
T ss_pred             ecCCCChHHHHHHHHHHHHHHhhhcccCCCCcEEEEEECCHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHH
Confidence              000 01111222333220          1127899999987655555443311   12 4699999999999999999


Q ss_pred             HHHH
Q 017143          120 VDAA  123 (376)
Q Consensus       120 ~~~a  123 (376)
                      -+..
T Consensus       214 n~~l  217 (542)
T PTZ00309        214 SNQL  217 (542)
T ss_pred             HHHH
Confidence            9877

>PRK06091 membrane protein FdrA; Validated

Probab=92.62  E-value=0.5  Score=46.36  Aligned_cols=71  Identities=10%  Similarity=0.150  Sum_probs=55.8

Q ss_pred             ccCCHHHHhhC-CCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeecc
Q 017143           62 VFPGHQELLDS-GLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEY  137 (376)
Q Consensus        62 ~~~~~~~~l~~-~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~  137 (376)
                      .|.+|++++++ +++|+++|++|...-.+.+.+|++  +|++|++---- ...+.-++|.+.|+++ |+ .++|.++
T Consensus       104 ~~~t~~~a~~~lpe~DLAvIsVPa~~v~~al~ea~~--~G~~viI~S~g-fg~~~E~~L~e~Ar~~-Gl-rvmGPNC  175 (555)
T PRK06091        104 QVRRWDSACQKLPDANLALISVAGEYAAELAEQALD--RNLNVMMFSDN-VTLEDEIRLKTRAREK-GL-LVMGPDC  175 (555)
T ss_pred             ccccHHHHHhcCCCCCEEEEecCHHHHHHHHHHHHH--cCCeEEEEcCC-CCHHHHHHHHHHHHHc-CC-EEECCCC
Confidence            68899998875 568999999999999999999999  77887764332 2577788999999554 74 4466666

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=92.59  E-value=0.44  Score=40.73  Aligned_cols=35  Identities=37%  Similarity=0.493  Sum_probs=29.5

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL   43 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~   43 (376)
                      .-||.|||+|.+|...++.|...   ++.-+.++|.+.
T Consensus        19 ~s~VlviG~gglGsevak~L~~~---GVg~i~lvD~d~   53 (198)
T cd01485          19 SAKVLIIGAGALGAEIAKNLVLA---GIDSITIVDHRL   53 (198)
T ss_pred             hCcEEEECCCHHHHHHHHHHHHc---CCCEEEEEECCc
Confidence            47999999999999999998885   777777888764

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]

Probab=92.55  E-value=1.4  Score=39.89  Aligned_cols=141  Identities=14%  Similarity=0.168  Sum_probs=78.7

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHH------------HHHHHHHhc-CCCCCccCCHHHHhhC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQ------------QALKLANAF-DWPLKVFPGHQELLDS   72 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~------------~~~~~~~~~-~~~~~~~~~~~~~l~~   72 (376)
                      ++||+-||+|..|..-..-++. ..|+++++ |+|.+..+..            -..++..+. |...-.-+|++..+..
T Consensus         1 ~~kiccigagyvggptcavia~-kcp~i~vt-vvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~e   78 (481)
T KOG2666|consen    1 MVKICCIGAGYVGGPTCAVIAL-KCPDIEVT-VVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKE   78 (481)
T ss_pred             CceEEEecCcccCCcchheeee-cCCceEEE-EEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhh
Confidence            3689999999998753332222 23899866 6788776421            011222221 2211223578888877


Q ss_pred             CCCCEEEEeCCCCcc-----------H----HHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHH-hCCCeEEEEeec
Q 017143           73 GLCDVVVVSTPNMTH-----------Y----QILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAAR-KRPDILVQVGLE  136 (376)
Q Consensus        73 ~~~D~V~i~t~~~~h-----------~----~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~-~~~~~~~~v~~~  136 (376)
                        .|+|+|...+...           .    ..++...+...+--+.+||.- ..+..|..+..... .+.|+.+++-.+
T Consensus        79 --adlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekst-vpv~aaesi~~il~~n~~~i~fqilsn  155 (481)
T KOG2666|consen   79 --ADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKST-VPVKAAESIEKILNHNSKGIKFQILSN  155 (481)
T ss_pred             --cceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeecc-ccchHHHHHHHHHhcCCCCceeEeccC
Confidence              6777766543221           1    122222221146679999964 23333333333332 345888888888


Q ss_pred             cccCHHHHHHHHHHH
Q 017143          137 YRYMPPVAKLIQIVK  151 (376)
Q Consensus       137 ~r~~p~~~~~k~~i~  151 (376)
                      .-|-..=..+|.+.+
T Consensus       156 peflaegtaikdl~n  170 (481)
T KOG2666|consen  156 PEFLAEGTAIKDLFN  170 (481)
T ss_pred             hHHhcccchhhhhcC
Confidence            777666666666654

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=92.55  E-value=1.7  Score=36.82  Aligned_cols=73  Identities=15%  Similarity=0.034  Sum_probs=45.4

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-C-CccCCHHHHhhCCCCCEEEEeC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-L-KVFPGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~l~~~~~D~V~i~t   82 (376)
                      ..+|.-||||. |..-+......  ++.++++ +|.+++..+.+++.+++.+++ + -...+.+++.....+|+|+...
T Consensus        46 g~~VLDiGcGt-G~~al~la~~~--~~~~V~g-iD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~  120 (187)
T PRK00107         46 GERVLDVGSGA-GFPGIPLAIAR--PELKVTL-VDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRA  120 (187)
T ss_pred             CCeEEEEcCCC-CHHHHHHHHHC--CCCeEEE-EeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEcc
Confidence            46899999984 33222222233  6778887 599988777777777776654 2 1234555544444699999743

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=92.52  E-value=0.28  Score=45.09  Aligned_cols=71  Identities=20%  Similarity=0.206  Sum_probs=44.1

Q ss_pred             eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH-HHHHHHHHh--c-CC-CCCc-cCCHHHHhhCCCCCEEEEe
Q 017143            8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSR-QQALKLANA--F-DW-PLKV-FPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~~--~-~~-~~~~-~~~~~~~l~~~~~D~V~i~   81 (376)
                      ||+|||+|.+|...+..+...  +-+.-+.++|.+++.. ..+.++..-  + +. .++. .++|+++ +  +.|+|+|+
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~--~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~-~--~aDivvit   75 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALAL--GLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDC-A--DADIIVIT   75 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhc--CCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHh-C--CCCEEEEC
Confidence            799999999999877777665  4555566889877633 233344321  1 11 1122 2466554 3  37999997


Q ss_pred             CC
Q 017143           82 TP   83 (376)
Q Consensus        82 t~   83 (376)
                      .-
T Consensus        76 aG   77 (307)
T cd05290          76 AG   77 (307)
T ss_pred             CC
Confidence            65

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=92.49  E-value=0.67  Score=42.35  Aligned_cols=106  Identities=17%  Similarity=0.125  Sum_probs=61.1

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhhcC--C-CcEEEEEeCCChhhHHHHHHHHH---------hc----CCC--CCccCC
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHLRS--Q-GVSVVCIADPHLQSRQQALKLAN---------AF----DWP--LKVFPG   65 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~--~-~~~~~~v~d~~~~~~~~~~~~~~---------~~----~~~--~~~~~~   65 (376)
                      ++++||+|||.|.||......+..+-.  + .-.-|..|-+.++--.+.+.+.+         +|    .+|  +...+|
T Consensus        19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d   98 (372)
T KOG2711|consen   19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD   98 (372)
T ss_pred             cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence            357999999999999877666544310  1 11112233222211011222222         11    222  345678


Q ss_pred             HHHHhhCCCCCEEEEeCCCCccHHHHHHHH---cCCCCCeEEEecCCCCC
Q 017143           66 HQELLDSGLCDVVVVSTPNMTHYQILMDII---NHPKPHHVLVEKPLCTT  112 (376)
Q Consensus        66 ~~~~l~~~~~D~V~i~t~~~~h~~~~~~al---~~~~g~~Vl~EKP~a~~  112 (376)
                      +.++..+  .|+++-..|+++-..+..+..   +. .-..|-|-|=+...
T Consensus        99 l~ea~~d--ADilvf~vPhQf~~~ic~~l~g~vk~-~~~aISL~KG~e~~  145 (372)
T KOG2711|consen   99 LVEAAKD--ADILVFVVPHQFIPRICEQLKGYVKP-GATAISLIKGVEVG  145 (372)
T ss_pred             HHHHhcc--CCEEEEeCChhhHHHHHHHHhcccCC-CCeEEEeecceecc
Confidence            8888877  899999999999888777764   31 12236666666544

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=92.47  E-value=2.8  Score=35.27  Aligned_cols=71  Identities=11%  Similarity=0.144  Sum_probs=41.5

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-CCcc-CCHHHHhhCCCCCEEEEeC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LKVF-PGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~l~~~~~D~V~i~t   82 (376)
                      -+|.=||+|. |..-+......  ++.++++ +|.+++..+.+++-.++++++ ++.. .+....+. ..+|+|++..
T Consensus        33 ~~vLDiG~G~-G~~~~~la~~~--~~~~v~~-vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~-~~~D~v~~~~  105 (187)
T PRK08287         33 KHLIDVGAGT-GSVSIEAALQF--PSLQVTA-IERNPDALRLIKENRQRFGCGNIDIIPGEAPIELP-GKADAIFIGG  105 (187)
T ss_pred             CEEEEECCcC-CHHHHHHHHHC--CCCEEEE-EECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcC-cCCCEEEECC
Confidence            5788899984 43322223333  6678776 599998776666666666543 2222 23332332 3589888754

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=92.42  E-value=2.8  Score=39.12  Aligned_cols=84  Identities=14%  Similarity=0.129  Sum_probs=48.7

Q ss_pred             CCcEEEEEeCCChhhHHH-HHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCccHHHHH-HH---HcCCCCCeEEE
Q 017143           31 QGVSVVCIADPHLQSRQQ-ALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMTHYQILM-DI---INHPKPHHVLV  105 (376)
Q Consensus        31 ~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~h~~~~~-~a---l~~~~g~~Vl~  105 (376)
                      .+.+|+ ++|++++..+. ..+...+.|+.  ..++..+++++  .|+|++++|+..+.+-+. ..   +.  .| .+++
T Consensus        42 aG~~V~-v~Dr~~~~l~~~~~~~l~~~Gi~--~asd~~eaa~~--ADvVIlaVP~~~~v~~Vl~~L~~~L~--~g-~IVI  113 (342)
T PRK12557         42 AGHDVV-LAEPNRSILSEELWKKVEDAGVK--VVSDDAEAAKH--GEIHILFTPFGKKTVEIAKNILPHLP--EN-AVIC  113 (342)
T ss_pred             CCCeEE-EEECCHHHhhHHHHHHHHHCCCE--EeCCHHHHHhC--CCEEEEECCCcHHHHHHHHHHHhhCC--CC-CEEE
Confidence            366755 67888763321 22223455754  67788888765  899999999887433333 22   34  34 4666


Q ss_pred             ecCCCCCHHHH-HHHHHHH
Q 017143          106 EKPLCTTVADC-KKVVDAA  123 (376)
Q Consensus       106 EKP~a~~~~e~-~~l~~~a  123 (376)
                      .-. +.+.... +.+.+..
T Consensus       114 d~S-T~~~~~~s~~l~~~l  131 (342)
T PRK12557        114 NTC-TVSPVVLYYSLEGEL  131 (342)
T ss_pred             Eec-CCCHHHHHHHHHHHh
Confidence            644 3345544 4444443

>PLN02740 Alcohol dehydrogenase-like

Probab=92.40  E-value=1.1  Score=42.56  Aligned_cols=137  Identities=11%  Similarity=0.077  Sum_probs=75.5

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcE-EEEEeCCChhhHHHHHHHHHhcCCCCCcc--C----CHHHHhhC---CCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVS-VVCIADPHLQSRQQALKLANAFDWPLKVF--P----GHQELLDS---GLCD   76 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~-~~~v~d~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~l~~---~~~D   76 (376)
                      =+|.|+|+|.+|...+..++..   +.+ ++ ++++++++++.+    +++|.+ .++  .    ++.+.+.+   ..+|
T Consensus       200 ~~VlV~G~G~vG~~a~q~ak~~---G~~~Vi-~~~~~~~r~~~a----~~~Ga~-~~i~~~~~~~~~~~~v~~~~~~g~d  270 (381)
T PLN02740        200 SSVAIFGLGAVGLAVAEGARAR---GASKII-GVDINPEKFEKG----KEMGIT-DFINPKDSDKPVHERIREMTGGGVD  270 (381)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC---CCCcEE-EEcCChHHHHHH----HHcCCc-EEEecccccchHHHHHHHHhCCCCC
Confidence            3799999999999877766664   664 55 457777654433    456654 222  1    13332221   2589


Q ss_pred             EEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeecccc--CHHHHHHHHHHHcCC
Q 017143           77 VVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRY--MPPVAKLIQIVKSGS  154 (376)
Q Consensus        77 ~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~--~p~~~~~k~~i~~g~  154 (376)
                      +|+-++........+..+++.+.|+-|++=-+.....-+.. ..... +  ++.+.-.+...|  ...+..+.+++.+|.
T Consensus       271 vvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~~~~~~~~~~-~~~~~-~--~~~i~g~~~~~~~~~~~~~~~~~~~~~g~  346 (381)
T PLN02740        271 YSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPTPKMLPLH-PMELF-D--GRSITGSVFGDFKGKSQLPNLAKQCMQGV  346 (381)
T ss_pred             EEEECCCChHHHHHHHHhhhcCCCEEEEEccCCCCceeccc-HHHHh-c--CCeEEEEecCCCCcHHHHHHHHHHHHcCC
Confidence            99999987767777878886212666665433211000111 11122 1  233322222223  245677778888877


Q ss_pred             CC
Q 017143          155 IG  156 (376)
Q Consensus       155 iG  156 (376)
                      +-
T Consensus       347 i~  348 (381)
T PLN02740        347 VN  348 (381)
T ss_pred             CC
Confidence            64

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=92.40  E-value=0.53  Score=43.52  Aligned_cols=75  Identities=12%  Similarity=0.165  Sum_probs=41.9

Q ss_pred             CceeEEEEeC-ChhhHHHHHHhhhhcCCCc------EEEEEeCCChh--h-HHHHHHHHHhc--CCC-CCccCCHHHHhh
Q 017143            5 DTVKYGIIGM-GMMGREHFINLHHLRSQGV------SVVCIADPHLQ--S-RQQALKLANAF--DWP-LKVFPGHQELLD   71 (376)
Q Consensus         5 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~------~~~~v~d~~~~--~-~~~~~~~~~~~--~~~-~~~~~~~~~~l~   71 (376)
                      +++||+|||+ |.+|...+..+...  +-+      ++ .++|..+.  . ...+.++..-.  ..+ .....+-.+.++
T Consensus         2 ~p~KV~IIGa~G~VG~~~a~~l~~~--~~~~~~~~~el-~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~   78 (323)
T TIGR01759         2 KPVRVAVTGAAGQIGYSLLFRIASG--ELFGKDQPVVL-HLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFK   78 (323)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhC--CcccCCCccEE-EEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhC
Confidence            5899999998 99999877766654  322      44 47788542  1 12233332110  000 112223234444


Q ss_pred             CCCCCEEEEeCCC
Q 017143           72 SGLCDVVVVSTPN   84 (376)
Q Consensus        72 ~~~~D~V~i~t~~   84 (376)
                      +  .|+|+|+.-.
T Consensus        79 d--aDvVVitAG~   89 (323)
T TIGR01759        79 D--VDAALLVGAF   89 (323)
T ss_pred             C--CCEEEEeCCC
Confidence            4  7999987653

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PRK14031 glutamate dehydrogenase; Provisional

Probab=92.30  E-value=1.8  Score=41.63  Aligned_cols=106  Identities=13%  Similarity=0.108  Sum_probs=67.6

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeC----------CChhhHHHHHHHH-----------HhcCCCCCccC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIAD----------PHLQSRQQALKLA-----------NAFDWPLKVFP   64 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d----------~~~~~~~~~~~~~-----------~~~~~~~~~~~   64 (376)
                      -.||+|.|.|..|...+..|.+.   +.+|++|+|          .+.+.+....++.           .+++..   +-
T Consensus       228 g~rVaVQGfGNVG~~aA~~L~e~---GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~---~i  301 (444)
T PRK14031        228 GKVCLVSGSGNVAQYTAEKVLEL---GGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCK---YV  301 (444)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC---CCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCE---Ec
Confidence            47999999999999888888775   999999999          6665332111221           112211   22


Q ss_pred             CHHHHhhCCCCCEEEEeCC-CCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHH
Q 017143           65 GHQELLDSGLCDVVVVSTP-NMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVV  120 (376)
Q Consensus        65 ~~~~~l~~~~~D~V~i~t~-~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~  120 (376)
                      +-++++.. ++|+.+=|.- +.-+.+-+.+...  .|.-+++|--=..+..++.++.
T Consensus       302 ~~d~~~~~-~cDIliPaAl~n~I~~~na~~l~a--~g~~~V~EgAN~P~t~eA~~~L  355 (444)
T PRK14031        302 EGARPWGE-KGDIALPSATQNELNGDDARQLVA--NGVIAVSEGANMPSTPEAIKVF  355 (444)
T ss_pred             CCcccccC-CCcEEeecccccccCHHHHHHHHh--cCCeEEECCCCCCCCHHHHHHH
Confidence            44556554 4777665444 3466666666555  5677888876666666666544

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=92.22  E-value=1.3  Score=38.94  Aligned_cols=34  Identities=26%  Similarity=0.376  Sum_probs=28.3

Q ss_pred             eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChh
Q 017143            8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQ   44 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~   44 (376)
                      ||.|||+|..|...++.|...   ++.-..++|.|.=
T Consensus         1 kVlvvG~GGlG~eilk~La~~---Gvg~i~ivD~D~V   34 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALM---GFGQIHVIDMDTI   34 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHc---CCCeEEEEeCCEE
Confidence            689999999999999998886   6666778887654

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.13  E-value=1.1  Score=40.64  Aligned_cols=96  Identities=14%  Similarity=0.139  Sum_probs=60.5

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC----CCcc-CCHHHHhhC---CCCCEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP----LKVF-PGHQELLDS---GLCDVV   78 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~l~~---~~~D~V   78 (376)
                      -.++|+|+|..|..-+...+..  ..-++++ +|.++++.+++++    +|..    ++-+ ..++|.+.+   ..+|.-
T Consensus       194 stvAVfGLG~VGLav~~Gaka~--GAsrIIg-vDiN~~Kf~~ak~----fGaTe~iNp~d~~~~i~evi~EmTdgGvDys  266 (375)
T KOG0022|consen  194 STVAVFGLGGVGLAVAMGAKAA--GASRIIG-VDINPDKFEKAKE----FGATEFINPKDLKKPIQEVIIEMTDGGVDYS  266 (375)
T ss_pred             CEEEEEecchHHHHHHHhHHhc--CcccEEE-EecCHHHHHHHHh----cCcceecChhhccccHHHHHHHHhcCCceEE
Confidence            4689999999998877776665  5667777 5999986655554    4543    1111 224444442   457777


Q ss_pred             EEeCCCCccHHHHHHHHcCCCCCeEEEecCC
Q 017143           79 VVSTPNMTHYQILMDIINHPKPHHVLVEKPL  109 (376)
Q Consensus        79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~  109 (376)
                      +=|+-+..-...+.++.+.|-|+.|++=-+.
T Consensus       267 fEc~G~~~~m~~al~s~h~GwG~sv~iGv~~  297 (375)
T KOG0022|consen  267 FECIGNVSTMRAALESCHKGWGKSVVIGVAA  297 (375)
T ss_pred             EEecCCHHHHHHHHHHhhcCCCeEEEEEecC
Confidence            7777665555555666654456666664433

>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein

Probab=92.12  E-value=1.5  Score=43.51  Aligned_cols=99  Identities=12%  Similarity=0.025  Sum_probs=61.4

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH---HHHHHHHHhcCCC--CC-----ccCCHHHHhhCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSR---QQALKLANAFDWP--LK-----VFPGHQELLDSGLC   75 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~---~~~~~~~~~~~~~--~~-----~~~~~~~~l~~~~~   75 (376)
                      .-||+|+|+|.+|...+..|..+.-+.+..+ ++|.....+   ....+.+++++-.  +.     .-+++.+.++.  .
T Consensus       129 ~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~v-d~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~ev~~~--~  205 (637)
T TIGR03693       129 NAKILAAGSGDFLTKLVRSLIDSGFPRFHAI-VTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHEAFEP--A  205 (637)
T ss_pred             cccEEEEecCchHHHHHHHHHhcCCCcEEEE-eccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHHhhcC--C
Confidence            4799999999999999999998733333322 234433222   2335556555432  11     22456667754  8


Q ss_pred             CEEEEeCCCCccH---HHHHHHHcCCCCCeEEEecCC
Q 017143           76 DVVVVSTPNMTHY---QILMDIINHPKPHHVLVEKPL  109 (376)
Q Consensus        76 D~V~i~t~~~~h~---~~~~~al~~~~g~~Vl~EKP~  109 (376)
                      |+|+..+.+..+.   .+-.+|++  .|++-+--||.
T Consensus       206 DiVi~vsDdy~~~~Lr~lN~acvk--egk~~IPai~~  240 (637)
T TIGR03693       206 DWVLYVSDNGDIDDLHALHAFCKE--EGKGFIPAICL  240 (637)
T ss_pred             cEEEEECCCCChHHHHHHHHHHHH--cCCCeEEEEEc
Confidence            9999999876654   44556788  77665554443

Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=92.12  E-value=4.2  Score=37.61  Aligned_cols=88  Identities=16%  Similarity=0.246  Sum_probs=55.2

Q ss_pred             eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc----CCHHH-HhhCCCCCEEEEeC
Q 017143            8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF----PGHQE-LLDSGLCDVVVVST   82 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~l~~~~~D~V~i~t   82 (376)
                      +|.|.|.|.+|...+..++..   +++++++ ++++++.    ++++++|.. .+.    .++.+ +.....+|+|+-++
T Consensus       166 ~vlV~g~g~iG~~~~~~a~~~---G~~vi~~-~~~~~~~----~~~~~~g~~-~~i~~~~~~~~~~~~~~~~~d~vi~~~  236 (333)
T cd08296         166 LVAVQGIGGLGHLAVQYAAKM---GFRTVAI-SRGSDKA----DLARKLGAH-HYIDTSKEDVAEALQELGGAKLILATA  236 (333)
T ss_pred             EEEEECCcHHHHHHHHHHHHC---CCeEEEE-eCChHHH----HHHHHcCCc-EEecCCCccHHHHHHhcCCCCEEEECC
Confidence            789999999998876666664   7787765 5555532    334556654 221    12333 32223589999877


Q ss_pred             CCCccHHHHHHHHcCCCCCeEEE
Q 017143           83 PNMTHYQILMDIINHPKPHHVLV  105 (376)
Q Consensus        83 ~~~~h~~~~~~al~~~~g~~Vl~  105 (376)
                      ........+.++++. .|+-|.+
T Consensus       237 g~~~~~~~~~~~l~~-~G~~v~~  258 (333)
T cd08296         237 PNAKAISALVGGLAP-RGKLLIL  258 (333)
T ss_pred             CchHHHHHHHHHccc-CCEEEEE
Confidence            656677888888874 3555554

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PRK14967 putative methyltransferase; Provisional

Probab=92.09  E-value=7.5  Score=33.77  Aligned_cols=72  Identities=17%  Similarity=-0.002  Sum_probs=43.0

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC-CccCCHHHHhhCCCCCEEEEeCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL-KVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      -+|.-+|||. |...+ .++..  ...++++ +|.++...+.+++-++..++.+ -...|+.+.+.+..+|+|+...|
T Consensus        38 ~~vLDlGcG~-G~~~~-~la~~--~~~~v~~-vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npP  110 (223)
T PRK14967         38 RRVLDLCTGS-GALAV-AAAAA--GAGSVTA-VDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPP  110 (223)
T ss_pred             CeEEEecCCH-HHHHH-HHHHc--CCCeEEE-EECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCC
Confidence            5899999996 55322 23333  2236665 5999886665655555555432 12246656555556898887544

>PRK05086 malate dehydrogenase; Provisional

Probab=92.06  E-value=0.31  Score=44.94  Aligned_cols=75  Identities=20%  Similarity=0.198  Sum_probs=42.8

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH-hcCCCCCc--cCCHHHHhhCCCCCEEEEeC
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN-AFDWPLKV--FPGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~l~~~~~D~V~i~t   82 (376)
                      +||+|||+ |.+|...+..+.... +....+.++|+++.....+..+.. .....+..  .+++.+.+.+  .|+|++|.
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~-~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~--~DiVIita   77 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQL-PAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEG--ADVVLISA   77 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCC-CCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCC--CCEEEEcC
Confidence            58999999 999998776664421 344555677876542111122221 11111111  2465555654  99999987


Q ss_pred             CC
Q 017143           83 PN   84 (376)
Q Consensus        83 ~~   84 (376)
                      -.
T Consensus        78 G~   79 (312)
T PRK05086         78 GV   79 (312)
T ss_pred             CC
Confidence            74

>PLN02477 glutamate dehydrogenase

Probab=92.02  E-value=1.6  Score=41.67  Aligned_cols=103  Identities=19%  Similarity=0.260  Sum_probs=61.0

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCC----------hhhHHHHHHHHHhcCCCCCcc-----CCHHHH
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPH----------LQSRQQALKLANAFDWPLKVF-----PGHQEL   69 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~----------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~   69 (376)
                      +..||+|.|.|.+|+..+..|.+.   +.+|++|+|.+          .+   ...+..++.+- +..|     -+.+++
T Consensus       205 ~g~~VaIqGfGnVG~~~A~~L~e~---GakVVaVsD~~G~iy~~~GLD~~---~L~~~k~~~g~-l~~~~~a~~i~~~e~  277 (410)
T PLN02477        205 AGQTFVIQGFGNVGSWAAQLIHEK---GGKIVAVSDITGAVKNENGLDIP---ALRKHVAEGGG-LKGFPGGDPIDPDDI  277 (410)
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHc---CCEEEEEECCCCeEECCCCCCHH---HHHHHHHhcCc-hhccccceEecCccc
Confidence            347999999999999988877664   89999999987          44   33333222221 1111     134566


Q ss_pred             hhCCCCCEEEEeCC-CCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHH
Q 017143           70 LDSGLCDVVVVSTP-NMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVV  120 (376)
Q Consensus        70 l~~~~~D~V~i~t~-~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~  120 (376)
                      +.. ++|+.+=|.- +.-+.+-+.+ ++    ..+++|--=.....++.+++
T Consensus       278 l~~-~~DvliP~Al~~~I~~~na~~-i~----ak~I~egAN~p~t~ea~~~L  323 (410)
T PLN02477        278 LVE-PCDVLIPAALGGVINKENAAD-VK----AKFIVEAANHPTDPEADEIL  323 (410)
T ss_pred             eec-cccEEeeccccccCCHhHHHH-cC----CcEEEeCCCCCCCHHHHHHH
Confidence            665 5887776643 3444444443 34    34777753333334455444

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=92.01  E-value=0.28  Score=41.00  Aligned_cols=65  Identities=17%  Similarity=0.136  Sum_probs=43.7

Q ss_pred             EEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC--CccC---CHHHHhhCCCCCEEEEeC
Q 017143            9 YGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL--KVFP---GHQELLDSGLCDVVVVST   82 (376)
Q Consensus         9 v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~l~~~~~D~V~i~t   82 (376)
                      |.|+|+ |.+|+..+..|.+.   +.+|++++ |++++   ..+   ..++.+  .-+.   ++.+++.  +.|+|+.+.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~---~~~V~~~~-R~~~~---~~~---~~~~~~~~~d~~d~~~~~~al~--~~d~vi~~~   68 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRR---GHEVTALV-RSPSK---AED---SPGVEIIQGDLFDPDSVKAALK--GADAVIHAA   68 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT---TSEEEEEE-SSGGG---HHH---CTTEEEEESCTTCHHHHHHHHT--TSSEEEECC
T ss_pred             eEEECCCChHHHHHHHHHHHC---CCEEEEEe-cCchh---ccc---ccccccceeeehhhhhhhhhhh--hcchhhhhh
Confidence            689995 99999999998886   59999877 66664   332   223221  1123   3455665  489999988


Q ss_pred             CCC
Q 017143           83 PNM   85 (376)
Q Consensus        83 ~~~   85 (376)
                      ++.
T Consensus        69 ~~~   71 (183)
T PF13460_consen   69 GPP   71 (183)
T ss_dssp             HST
T ss_pred             hhh
Confidence            753

...

>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional

Probab=91.97  E-value=2.7  Score=41.30  Aligned_cols=83  Identities=17%  Similarity=0.166  Sum_probs=54.0

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHH---HhhCCCCCEEEEeCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQE---LLDSGLCDVVVVSTP   83 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~D~V~i~t~   83 (376)
                      .++.|||+|..|...+..+.+.+.-+++++|++|.++..    .   .-.|+|  ++.+.++   ......+| ++|+.|
T Consensus       147 rrvLIIGaG~~a~~l~~~L~~~~~~g~~vVGfIDd~~~~----~---~i~gvP--Vlg~~d~l~~~~~~~~v~-vIIAip  216 (476)
T PRK15204        147 KKTIILGSGQNARGAYSALQSEEMMGFDVIAFFDTDASD----A---EINMLP--VIKDTEIIWDLNRTGDVH-YILAYE  216 (476)
T ss_pred             CeEEEEECCHHHHHHHHHHHhCccCCcEEEEEEcCCccc----c---ccCCCc--ccCCHHHHHHHHHhCCCc-EEEEeC
Confidence            579999999999988888876533489999999976542    1   124666  5555443   34344566 478877


Q ss_pred             CCc---cHHHHHHHHcCCCCC
Q 017143           84 NMT---HYQILMDIINHPKPH  101 (376)
Q Consensus        84 ~~~---h~~~~~~al~~~~g~  101 (376)
                      ...   ..+++.++.+  .|.
T Consensus       217 ~~~~~~r~~il~~l~~--~gv  235 (476)
T PRK15204        217 YTELEKTHFWLRELSK--HHC  235 (476)
T ss_pred             cCcHHHHHHHHHHHhh--cCC
Confidence            543   2245556655  555

>PRK05442 malate dehydrogenase; Provisional

Probab=91.95  E-value=0.4  Score=44.42  Aligned_cols=75  Identities=9%  Similarity=0.147  Sum_probs=40.8

Q ss_pred             CceeEEEEeC-ChhhHHHHHHhhhhcCCCcE-----EEEEeCCChhh--H-HHHHHHHHh---cCCCCCccCCHHHHhhC
Q 017143            5 DTVKYGIIGM-GMMGREHFINLHHLRSQGVS-----VVCIADPHLQS--R-QQALKLANA---FDWPLKVFPGHQELLDS   72 (376)
Q Consensus         5 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~-----~~~v~d~~~~~--~-~~~~~~~~~---~~~~~~~~~~~~~~l~~   72 (376)
                      ++.||+|||+ |.+|...+..+...  .-+.     -+.++|..+..  + ..+.++..-   +.-.+..+.+..+.+++
T Consensus         3 ~~~KV~IiGaaG~VG~~~a~~l~~~--~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~d   80 (326)
T PRK05442          3 APVRVAVTGAAGQIGYSLLFRIASG--DMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKD   80 (326)
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHhh--hhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCC
Confidence            4789999998 99999877666553  2222     34477885431  1 122222211   10011233333344444


Q ss_pred             CCCCEEEEeCC
Q 017143           73 GLCDVVVVSTP   83 (376)
Q Consensus        73 ~~~D~V~i~t~   83 (376)
                        .|+|+|+.-
T Consensus        81 --aDiVVitaG   89 (326)
T PRK05442         81 --ADVALLVGA   89 (326)
T ss_pred             --CCEEEEeCC
Confidence              799998765

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=91.94  E-value=0.65  Score=43.93  Aligned_cols=77  Identities=13%  Similarity=0.205  Sum_probs=42.8

Q ss_pred             CCceeEEEEeC-ChhhHHHHHHhhhhcC----CCcEEEEE-eCCChhhHH-HHHHHHH---hcCCCCCcc-CCHHHHhhC
Q 017143            4 NDTVKYGIIGM-GMMGREHFINLHHLRS----QGVSVVCI-ADPHLQSRQ-QALKLAN---AFDWPLKVF-PGHQELLDS   72 (376)
Q Consensus         4 ~~~~~v~iiG~-G~~g~~~~~~~~~~~~----~~~~~~~v-~d~~~~~~~-~~~~~~~---~~~~~~~~~-~~~~~~l~~   72 (376)
                      .+++||+|||+ |.+|...+..+....-    ..+.|+=+ +|++.+.++ .+.++..   -+...+.++ +++++ +++
T Consensus        42 ~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~-~kd  120 (387)
T TIGR01757        42 KKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEV-FED  120 (387)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHH-hCC
Confidence            35799999999 9999988777766510    12344433 477666431 2222221   111112222 44444 444


Q ss_pred             CCCCEEEEeCC
Q 017143           73 GLCDVVVVSTP   83 (376)
Q Consensus        73 ~~~D~V~i~t~   83 (376)
                        .|+|+|+..
T Consensus       121 --aDIVVitAG  129 (387)
T TIGR01757       121 --ADWALLIGA  129 (387)
T ss_pred             --CCEEEECCC
Confidence              799998764

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>PLN02333 glucose-6-phosphate 1-dehydrogenase

Probab=91.87  E-value=1.7  Score=43.16  Aligned_cols=119  Identities=13%  Similarity=0.189  Sum_probs=68.6

Q ss_pred             ceeEEEEeC-ChhhH-HHHHHhhhhc-----CCCcEEEEEeCCChhhH---HHH------------------HHHHHhcC
Q 017143            6 TVKYGIIGM-GMMGR-EHFINLHHLR-----SQGVSVVCIADPHLQSR---QQA------------------LKLANAFD   57 (376)
Q Consensus         6 ~~~v~iiG~-G~~g~-~~~~~~~~~~-----~~~~~~~~v~d~~~~~~---~~~------------------~~~~~~~~   57 (376)
                      ...|.|+|+ |-.++ ..+|+|-++-     ++++.|+|+.-.+-...   +..                  .+|.+...
T Consensus       117 ~~~iVIFGASGDLAkRKL~PALf~L~~~g~Lp~~~~IiG~aRs~~t~eefr~~v~~~l~~~~~~~~~~~~~~~~F~~~~~  196 (604)
T PLN02333        117 TVSITVVGASGDLAKKKIFPALFALYYEGCLPEHFTIFGYARSKMTDAELRNMVSKTLTCRIDKRENCGEKMEEFLKRCF  196 (604)
T ss_pred             ceEEEEecCccHHhHhhHHHHHHHHHHcCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHhhcccccccHHHHHHHHhcCE
Confidence            478899995 66665 5778876652     35799999774332211   111                  11111100


Q ss_pred             CCCCccCC------HHHHhhCC-----CCCEEEEeCCCCccHHHHHHHHcCC---CC-CeEEEecCCCCCHHHHHHHHHH
Q 017143           58 WPLKVFPG------HQELLDSG-----LCDVVVVSTPNMTHYQILMDIINHP---KP-HHVLVEKPLCTTVADCKKVVDA  122 (376)
Q Consensus        58 ~~~~~~~~------~~~~l~~~-----~~D~V~i~t~~~~h~~~~~~al~~~---~g-~~Vl~EKP~a~~~~e~~~l~~~  122 (376)
                      .-..-|++      +.+.++..     .--+.++++||..-..++...-+.+   .| .-|.+|||++.+.+.+++|-+.
T Consensus       197 Y~~gd~d~~e~y~~L~~~l~~~e~~~~~nrlfYLAlPP~~f~~v~~~L~~~~l~~~gw~RIVvEKPFG~Dl~SA~~Ln~~  276 (604)
T PLN02333        197 YHSGQYDSQEHFAELDKKLKEHEGGRVSNRLFYLSIPPNIFVDAVKCASSSASSVNGWTRVIVEKPFGRDSESSAALTKS  276 (604)
T ss_pred             EEecCCCCHHHHHHHHHHHHHhhcCCCccEEEEEECCHHHHHHHHHHHHHhCCCcCCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            00011232      22333221     1137899999988666655443311   12 4799999999999999999888


Q ss_pred             HH
Q 017143          123 AR  124 (376)
Q Consensus       123 a~  124 (376)
                      ..
T Consensus       277 L~  278 (604)
T PLN02333        277 LK  278 (604)
T ss_pred             HH
Confidence            73

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=91.86  E-value=4.2  Score=37.90  Aligned_cols=90  Identities=11%  Similarity=0.171  Sum_probs=56.7

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc----CCH-H---HHhhCCCCCEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF----PGH-Q---ELLDSGLCDVV   78 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~-~---~~l~~~~~D~V   78 (376)
                      -+|.|.|+|.+|...+...+..   +.+.+.+.++++++.    ++++++|.+ .+.    .++ +   ++.....+|+|
T Consensus       168 ~~vlI~g~g~iG~~~~~lak~~---G~~~v~~~~~~~~~~----~~~~~~g~~-~~v~~~~~~~~~~i~~~~~~~~~d~v  239 (351)
T cd08285         168 DTVAVFGIGPVGLMAVAGARLR---GAGRIIAVGSRPNRV----ELAKEYGAT-DIVDYKNGDVVEQILKLTGGKGVDAV  239 (351)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc---CCCeEEEEeCCHHHH----HHHHHcCCc-eEecCCCCCHHHHHHHHhCCCCCcEE
Confidence            4788999999988766555544   675444566666533    444566754 222    122 2   22323458999


Q ss_pred             EEeCCCCccHHHHHHHHcCCCCCeEEE
Q 017143           79 VVSTPNMTHYQILMDIINHPKPHHVLV  105 (376)
Q Consensus        79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~  105 (376)
                      +-++........+.++++. .|+-|.+
T Consensus       240 ld~~g~~~~~~~~~~~l~~-~G~~v~~  265 (351)
T cd08285         240 IIAGGGQDTFEQALKVLKP-GGTISNV  265 (351)
T ss_pred             EECCCCHHHHHHHHHHhhc-CCEEEEe
Confidence            9998876677888888874 3666654

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=91.84  E-value=0.3  Score=44.91  Aligned_cols=35  Identities=23%  Similarity=0.355  Sum_probs=26.4

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChh
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQ   44 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~   44 (376)
                      .+||+|||+|.+|....-.|.+.   +.+|+ +++++.+
T Consensus         2 ~m~I~IiGaGaiG~~~a~~L~~~---G~~V~-lv~r~~~   36 (305)
T PRK05708          2 SMTWHILGAGSLGSLWACRLARA---GLPVR-LILRDRQ   36 (305)
T ss_pred             CceEEEECCCHHHHHHHHHHHhC---CCCeE-EEEechH
Confidence            46899999999999887777764   55655 4566655

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=91.81  E-value=6.1  Score=36.93  Aligned_cols=89  Identities=12%  Similarity=0.038  Sum_probs=54.6

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCc--c---CCHHHHhhC---CCCCE
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKV--F---PGHQELLDS---GLCDV   77 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~l~~---~~~D~   77 (376)
                      -+|.|.|+ |.+|...+...+..   +.+++++ +.+++   +.+.+.+++|.. .+  |   +++.+.+..   ..+|+
T Consensus       160 ~~VlV~GaaG~vG~~aiqlAk~~---G~~Vi~~-~~~~~---k~~~~~~~lGa~-~vi~~~~~~~~~~~i~~~~~~gvD~  231 (348)
T PLN03154        160 DSVFVSAASGAVGQLVGQLAKLH---GCYVVGS-AGSSQ---KVDLLKNKLGFD-EAFNYKEEPDLDAALKRYFPEGIDI  231 (348)
T ss_pred             CEEEEecCccHHHHHHHHHHHHc---CCEEEEE-cCCHH---HHHHHHHhcCCC-EEEECCCcccHHHHHHHHCCCCcEE
Confidence            47899998 88998776655554   7787764 45555   333333356765 22  2   144443322   25899


Q ss_pred             EEEeCCCCccHHHHHHHHcCCCCCeEEE
Q 017143           78 VVVSTPNMTHYQILMDIINHPKPHHVLV  105 (376)
Q Consensus        78 V~i~t~~~~h~~~~~~al~~~~g~~Vl~  105 (376)
                      |+-++.. .....+..+++. .|+-|++
T Consensus       232 v~d~vG~-~~~~~~~~~l~~-~G~iv~~  257 (348)
T PLN03154        232 YFDNVGG-DMLDAALLNMKI-HGRIAVC  257 (348)
T ss_pred             EEECCCH-HHHHHHHHHhcc-CCEEEEE
Confidence            9988875 456777788874 3655554

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=91.73  E-value=0.54  Score=42.85  Aligned_cols=62  Identities=24%  Similarity=0.463  Sum_probs=47.4

Q ss_pred             eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143            8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      .+||+|+|.+|..-...++..   +..+++.-+..+.      +.++.+|+.   +-+++|++..  .|.|.+.+|
T Consensus       148 TLgvlG~GrIGseVA~r~k~~---gm~vI~~dpi~~~------~~~~a~gvq---~vsl~Eil~~--ADFitlH~P  209 (406)
T KOG0068|consen  148 TLGVLGLGRIGSEVAVRAKAM---GMHVIGYDPITPM------ALAEAFGVQ---LVSLEEILPK--ADFITLHVP  209 (406)
T ss_pred             EEEEeecccchHHHHHHHHhc---CceEEeecCCCch------HHHHhccce---eeeHHHHHhh--cCEEEEccC
Confidence            689999999999988777776   7787765544443      334566764   5679999977  899999888

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=91.69  E-value=0.74  Score=42.18  Aligned_cols=68  Identities=21%  Similarity=0.156  Sum_probs=40.7

Q ss_pred             EEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHH--HH---hcCCC--CCccCCHHHHhhCCCCCEEEEe
Q 017143            9 YGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKL--AN---AFDWP--LKVFPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         9 v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~--~~---~~~~~--~~~~~~~~~~l~~~~~D~V~i~   81 (376)
                      |+|||+|.+|......++..  .-.+ +.++|++++.. ++..+  ..   ..+..  +..++++++ +.+  .|+|+++
T Consensus         1 I~IIGaG~vG~~ia~~la~~--~l~e-V~L~Di~e~~~-~g~~~dl~~~~~~~~~~~~I~~t~d~~~-l~d--ADiVIit   73 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALK--ELGD-VVLLDIVEGLP-QGKALDISQAAPILGSDTKVTGTNDYED-IAG--SDVVVIT   73 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhC--CCcE-EEEEeCCCcHH-HHHHHHHHHhhhhcCCCeEEEEcCCHHH-hCC--CCEEEEe
Confidence            68999999999876666553  2125 45789987743 22221  11   11211  233467766 544  8999987


Q ss_pred             CC
Q 017143           82 TP   83 (376)
Q Consensus        82 t~   83 (376)
                      ..
T Consensus        74 ~g   75 (300)
T cd01339          74 AG   75 (300)
T ss_pred             cC
Confidence            64

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK06444 prephenate dehydrogenase; Provisional

Probab=91.66  E-value=0.33  Score=41.42  Aligned_cols=27  Identities=33%  Similarity=0.358  Sum_probs=21.6

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEE
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVV   36 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~   36 (376)
                      +|++|||. |.+|+.....+.+.   ++.++
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~---g~~v~   28 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDN---GLGVY   28 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhC---CCEEE
Confidence            48999997 99999988877664   66653

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=91.63  E-value=3  Score=39.27  Aligned_cols=91  Identities=15%  Similarity=0.194  Sum_probs=57.0

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCc-EEEEEeCCChhhHHHHHHHHHhcCCCCCcc--C----CHHHHhh---CCCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGV-SVVCIADPHLQSRQQALKLANAFDWPLKVF--P----GHQELLD---SGLCD   76 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~-~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~l~---~~~~D   76 (376)
                      -+|.|+|+|.+|...+..++..   +. .++ +.++++++++    +++++|.+ .++  .    ++.+.+.   ...+|
T Consensus       188 ~~VlV~G~G~vG~~a~~~ak~~---G~~~vi-~~~~~~~~~~----~~~~lGa~-~~i~~~~~~~~~~~~v~~~~~~g~d  258 (368)
T cd08300         188 STVAVFGLGAVGLAVIQGAKAA---GASRII-GIDINPDKFE----LAKKFGAT-DCVNPKDHDKPIQQVLVEMTDGGVD  258 (368)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc---CCCeEE-EEeCCHHHHH----HHHHcCCC-EEEcccccchHHHHHHHHHhCCCCc
Confidence            4789999999999877766665   67 455 4566666433    33456654 222  1    2333222   12589


Q ss_pred             EEEEeCCCCccHHHHHHHHcCCCCCeEEEe
Q 017143           77 VVVVSTPNMTHYQILMDIINHPKPHHVLVE  106 (376)
Q Consensus        77 ~V~i~t~~~~h~~~~~~al~~~~g~~Vl~E  106 (376)
                      +|+-++........+.++++.+.|+-|++-
T Consensus       259 ~vid~~g~~~~~~~a~~~l~~~~G~~v~~g  288 (368)
T cd08300         259 YTFECIGNVKVMRAALEACHKGWGTSVIIG  288 (368)
T ss_pred             EEEECCCChHHHHHHHHhhccCCCeEEEEc
Confidence            999998876677778888862125666554

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=91.58  E-value=2.5  Score=40.76  Aligned_cols=109  Identities=14%  Similarity=0.170  Sum_probs=66.5

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCC----------hhhHHHHHHHHHhc-C-CC--C-----CccCCH
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPH----------LQSRQQALKLANAF-D-WP--L-----KVFPGH   66 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~----------~~~~~~~~~~~~~~-~-~~--~-----~~~~~~   66 (376)
                      -.||+|=|.|..|...+..+.+.   +.+|++|+|.+          .+.+....++.+.. + +.  .     ..|-+-
T Consensus       237 Gk~VaVqG~GnVg~~aa~~L~e~---GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~~~  313 (454)
T PTZ00079        237 GKTVVVSGSGNVAQYAVEKLLQL---GAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYVPG  313 (454)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC---CCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEeCC
Confidence            47999999999999888877775   99999999998          54332223322211 0 00  0     011123


Q ss_pred             HHHhhCCCCCEEEEeC-CCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHH
Q 017143           67 QELLDSGLCDVVVVST-PNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVV  120 (376)
Q Consensus        67 ~~~l~~~~~D~V~i~t-~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~  120 (376)
                      ++++.. ++|+.+=|. .+..+.+-+...++  .+..+.+|--=..+..++.++.
T Consensus       314 ~~~~~~-~cDI~iPcA~~n~I~~~~a~~l~~--~~ak~V~EgAN~p~t~eA~~~L  365 (454)
T PTZ00079        314 KKPWEV-PCDIAFPCATQNEINLEDAKLLIK--NGCKLVAEGANMPTTIEATHLF  365 (454)
T ss_pred             cCcccC-CccEEEeccccccCCHHHHHHHHH--cCCeEEEecCCCCCCHHHHHHH
Confidence            344443 477766544 34577777777777  6677888864433333565554

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=91.54  E-value=7.3  Score=32.69  Aligned_cols=105  Identities=15%  Similarity=0.123  Sum_probs=61.3

Q ss_pred             eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-C-CccCCHHHHhhC-CCCCEEEEeCCC
Q 017143            8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-L-KVFPGHQELLDS-GLCDVVVVSTPN   84 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~l~~-~~~D~V~i~t~~   84 (376)
                      ++.=||+|. |.--+......  |..+++|| +++++..+..++=+++||++ + -+-.+.-+.|.+ +++|+|+|... 
T Consensus        37 ~l~DIGaGt-Gsi~iE~a~~~--p~~~v~AI-e~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg-  111 (187)
T COG2242          37 RLWDIGAGT-GSITIEWALAG--PSGRVIAI-ERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGG-  111 (187)
T ss_pred             EEEEeCCCc-cHHHHHHHHhC--CCceEEEE-ecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCC-
Confidence            567788763 22222223333  78898885 88888777777777888877 2 122344455554 46999999987 


Q ss_pred             CccHHHHHH----HHcCCCCCeEEEecCCCCCHHHHHHHHHHH
Q 017143           85 MTHYQILMD----IINHPKPHHVLVEKPLCTTVADCKKVVDAA  123 (376)
Q Consensus        85 ~~h~~~~~~----al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a  123 (376)
                       .+.+-+++    .|+  .|-.+.+-   +.+++-...+.+.-
T Consensus       112 -~~i~~ile~~~~~l~--~ggrlV~n---aitlE~~~~a~~~~  148 (187)
T COG2242         112 -GNIEEILEAAWERLK--PGGRLVAN---AITLETLAKALEAL  148 (187)
T ss_pred             -CCHHHHHHHHHHHcC--cCCeEEEE---eecHHHHHHHHHHH
Confidence             33333333    344  33333332   34555555555555

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=91.51  E-value=1.1  Score=40.75  Aligned_cols=33  Identities=27%  Similarity=0.346  Sum_probs=26.0

Q ss_pred             eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh
Q 017143            8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL   43 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~   43 (376)
                      ||.|||+|..|...+..|...   ++.=+.++|.+.
T Consensus         1 kVLIvGaGGLGs~vA~~La~a---GVg~ItlvD~D~   33 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGW---GVRHITFVDSGK   33 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHc---CCCeEEEECCCE
Confidence            689999999999988888775   666566676643

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PRK07411 hypothetical protein; Validated

Probab=91.48  E-value=1.2  Score=42.38  Aligned_cols=36  Identities=22%  Similarity=0.313  Sum_probs=30.3

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChh
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQ   44 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~   44 (376)
                      .-||.|||+|..|...+..|...   ++.-+.++|.|.-
T Consensus        38 ~~~VlivG~GGlG~~va~~La~~---Gvg~l~lvD~D~v   73 (390)
T PRK07411         38 AASVLCIGTGGLGSPLLLYLAAA---GIGRIGIVDFDVV   73 (390)
T ss_pred             cCcEEEECCCHHHHHHHHHHHHc---CCCEEEEECCCEe
Confidence            56999999999999999888886   7777778888653

>PTZ00325 malate dehydrogenase; Provisional

Probab=91.41  E-value=0.52  Score=43.50  Aligned_cols=77  Identities=18%  Similarity=0.188  Sum_probs=43.9

Q ss_pred             CCCceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh-cCCCCCccCC---HHHHhhCCCCCE
Q 017143            3 ANDTVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA-FDWPLKVFPG---HQELLDSGLCDV   77 (376)
Q Consensus         3 ~~~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~l~~~~~D~   77 (376)
                      ..++.||+|||+ |.+|......+...  +...-+.++|++.. ...+.++..- ....+..+++   +.+.+++  .|+
T Consensus         5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~--~~~~elvL~Di~~~-~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~g--aDv   79 (321)
T PTZ00325          5 ALKMFKVAVLGAAGGIGQPLSLLLKQN--PHVSELSLYDIVGA-PGVAADLSHIDTPAKVTGYADGELWEKALRG--ADL   79 (321)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHhcC--CCCCEEEEEecCCC-cccccchhhcCcCceEEEecCCCchHHHhCC--CCE
Confidence            346789999998 99999877777654  34444457777322 1122222210 0111222323   2455554  899


Q ss_pred             EEEeCCC
Q 017143           78 VVVSTPN   84 (376)
Q Consensus        78 V~i~t~~   84 (376)
                      |+++.-.
T Consensus        80 VVitaG~   86 (321)
T PTZ00325         80 VLICAGV   86 (321)
T ss_pred             EEECCCC
Confidence            9988764

>PRK00885 phosphoribosylamine--glycine ligase; Provisional

Probab=91.37  E-value=0.54  Score=45.31  Aligned_cols=88  Identities=16%  Similarity=0.048  Sum_probs=46.4

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHH---HhhCCCCCEEEEeCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQE---LLDSGLCDVVVVSTP   83 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~D~V~i~t~   83 (376)
                      +||.|||.|......+..+++.  ++...+.+ ++....   ....++.+.++   +.+.++   +....++|+|++..-
T Consensus         1 ~kvliiG~G~~~~~l~~~l~~~--~~~~~i~~-~~~n~g---~~~~~~~~~~~---~~d~~~l~~~~~~~~id~vi~~~e   71 (420)
T PRK00885          1 MKVLVIGSGGREHALAWKLAQS--PLVEKVYV-APGNAG---TALLAENVVID---VTDIEALVAFAKEEGIDLTVVGPE   71 (420)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCCCEEEE-eCCCHH---HHhhccccCCC---CCCHHHHHHHHHHhCCCEEEECCc
Confidence            5999999996555555555554  56554544 443221   11112222222   355555   444567999886543


Q ss_pred             CCccHHHHHHHHcCCCCCeEEE
Q 017143           84 NMTHYQILMDIINHPKPHHVLV  105 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~  105 (376)
                      ...-..++..+-+  .|.+++.
T Consensus        72 ~~l~~~~~~~l~~--~gi~~~g   91 (420)
T PRK00885         72 APLVAGIVDAFRA--AGLPIFG   91 (420)
T ss_pred             hHHHHHHHHHHHH--CCCcEEC
Confidence            3332233334445  6777764

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=91.35  E-value=0.77  Score=41.67  Aligned_cols=75  Identities=16%  Similarity=0.118  Sum_probs=47.1

Q ss_pred             CceeEEEEeCChhhHH---HHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc----C---CH----HHHh
Q 017143            5 DTVKYGIIGMGMMGRE---HFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF----P---GH----QELL   70 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~---~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~----~---~~----~~~l   70 (376)
                      +++||+|.+.|. |..   .+.++... .-+.++++|....+    .++.+|+++|+|+..+    .   ++    .+.+
T Consensus        88 ~~~ri~vl~Sg~-gsnl~al~~~~~~~-~~~~~i~~visn~~----~~~~lA~~~gIp~~~~~~~~~~~~~~~~~~~~~l  161 (286)
T PRK06027         88 ERKRVVILVSKE-DHCLGDLLWRWRSG-ELPVEIAAVISNHD----DLRSLVERFGIPFHHVPVTKETKAEAEARLLELI  161 (286)
T ss_pred             cCcEEEEEEcCC-CCCHHHHHHHHHcC-CCCcEEEEEEEcCh----hHHHHHHHhCCCEEEeccCccccchhHHHHHHHH
Confidence            578999999997 432   22222221 12688888876544    3667799999983211    1   12    3445


Q ss_pred             hCCCCCEEEEeCCCC
Q 017143           71 DSGLCDVVVVSTPNM   85 (376)
Q Consensus        71 ~~~~~D~V~i~t~~~   85 (376)
                      .+.++|+++++.-..
T Consensus       162 ~~~~~Dlivlagy~~  176 (286)
T PRK06027        162 DEYQPDLVVLARYMQ  176 (286)
T ss_pred             HHhCCCEEEEecchh
Confidence            566799999988644

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=91.35  E-value=0.8  Score=40.06  Aligned_cols=43  Identities=19%  Similarity=0.135  Sum_probs=32.3

Q ss_pred             CCCCCceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH
Q 017143            1 MAANDTVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSR   46 (376)
Q Consensus         1 m~~~~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~   46 (376)
                      |..+++.+|.|+|. |.+|...+..|.+.   +.+++.++.++....
T Consensus         1 ~~~~~~~~vlItGasg~iG~~l~~~l~~~---g~~v~~~~~~~~~~~   44 (249)
T PRK12825          1 MGSLMGRVALVTGAARGLGRAIALRLARA---GADVVVHYRSDEEAA   44 (249)
T ss_pred             CCCCCCCEEEEeCCCchHHHHHHHHHHHC---CCeEEEEeCCCHHHH
Confidence            66666679999994 88999988888774   667776676665533

>PLN02640 glucose-6-phosphate 1-dehydrogenase

Probab=91.34  E-value=2.7  Score=41.63  Aligned_cols=120  Identities=15%  Similarity=0.199  Sum_probs=68.1

Q ss_pred             CceeEEEEeC-ChhhH-HHHHHhhhhc-----CCCcEEEEEeCCChhhH---HHH------------------HHHHHhc
Q 017143            5 DTVKYGIIGM-GMMGR-EHFINLHHLR-----SQGVSVVCIADPHLQSR---QQA------------------LKLANAF   56 (376)
Q Consensus         5 ~~~~v~iiG~-G~~g~-~~~~~~~~~~-----~~~~~~~~v~d~~~~~~---~~~------------------~~~~~~~   56 (376)
                      .+.-+.|.|+ |-.++ ..+|+|.++.     ++++.|+|+.-.+-+..   +..                  .+|.+..
T Consensus        87 ~~~~iVIFGATGDLA~RKL~PALy~L~~~g~Lp~~~~IIG~aR~~~s~e~fr~~v~~~l~~~~~~~~~~~~~~~~F~~~~  166 (573)
T PLN02640         87 STLSITVVGASGDLAKKKIFPALFALFYEDWLPENFTVFGYARTKLTDEELRDMISSTLTCRIDQRENCGDKMDQFLKRC  166 (573)
T ss_pred             CCeEEEEeCCccHhhhhhHHHHHHHHHHcCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHhhcccccccHHHHHHHHhcC
Confidence            4678889995 66665 5788876662     25899999774332211   111                  1111110


Q ss_pred             -----CCC-CCccCCHHHHhhC----C-CCCEEEEeCCCCccHHHHHHHHcCC---C-CCeEEEecCCCCCHHHHHHHHH
Q 017143           57 -----DWP-LKVFPGHQELLDS----G-LCDVVVVSTPNMTHYQILMDIINHP---K-PHHVLVEKPLCTTVADCKKVVD  121 (376)
Q Consensus        57 -----~~~-~~~~~~~~~~l~~----~-~~D~V~i~t~~~~h~~~~~~al~~~---~-g~~Vl~EKP~a~~~~e~~~l~~  121 (376)
                           ++. ...|..+.+.++.    . .--+.++++||..-..++...-..+   . ..-|.+|||++.+.+.|++|-+
T Consensus       167 ~Y~~gd~~d~e~y~~L~~~l~~~e~~~~~nrifYLAvPP~~f~~i~~~L~~~~~~~~g~~RIVvEKPFG~DL~SA~~Ln~  246 (573)
T PLN02640        167 FYHSGQYDSEEDFAELNKKLKEKEAGKLSNRLFYLSIPPNIFVDVVRCASLRASSENGWTRVIVEKPFGRDSESSGELTR  246 (573)
T ss_pred             EEEeCCCCChHHHHHHHHHHHHhhcCCCCcEEEEEECCHHHHHHHHHHHHhccCCcCCCeEEEEECCCCCCHHHHHHHHH
Confidence                 000 0111222223322    1 1237889999987666554421111   1 2479999999999999999888


Q ss_pred             HHH
Q 017143          122 AAR  124 (376)
Q Consensus       122 ~a~  124 (376)
                      ...
T Consensus       247 ~L~  249 (573)
T PLN02640        247 CLK  249 (573)
T ss_pred             HHH
Confidence            773

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=91.31  E-value=4.5  Score=38.04  Aligned_cols=135  Identities=14%  Similarity=0.096  Sum_probs=72.1

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC------CHHH----HhhCCCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP------GHQE----LLDSGLCD   76 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~------~~~~----~l~~~~~D   76 (376)
                      -+|.|+|+|.+|...+...+..   +++.+.++++++++++    +++++|.+ .+++      ++.+    +.. ..+|
T Consensus       186 ~~vlV~G~g~vG~~~~~~a~~~---G~~~Vi~~~~~~~~~~----~~~~~ga~-~~i~~~~~~~~~~~~~~~~~~-~g~d  256 (365)
T cd08277         186 STVAVFGLGAVGLSAIMGAKIA---GASRIIGVDINEDKFE----KAKEFGAT-DFINPKDSDKPVSEVIREMTG-GGVD  256 (365)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc---CCCeEEEEeCCHHHHH----HHHHcCCC-cEeccccccchHHHHHHHHhC-CCCC
Confidence            4789999999998776655554   6743334566666433    33456654 2221      1122    222 3589


Q ss_pred             EEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeecccc--CHHHHHHHHHHHcCC
Q 017143           77 VVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRY--MPPVAKLIQIVKSGS  154 (376)
Q Consensus        77 ~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~--~p~~~~~k~~i~~g~  154 (376)
                      +|+-++........+.++++.+.|+-|.+--+..... +.. ..+.. .  ++.+.-.+...|  ...+..+.+++.+|.
T Consensus       257 ~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~-~~~-~~~~~-~--~~~i~g~~~~~~~~~~~~~~~~~~~~~~~  331 (365)
T cd08277         257 YSFECTGNADLMNEALESTKLGWGVSVVVGVPPGAEL-SIR-PFQLI-L--GRTWKGSFFGGFKSRSDVPKLVSKYMNKK  331 (365)
T ss_pred             EEEECCCChHHHHHHHHhcccCCCEEEEEcCCCcccc-ccC-HhHHh-h--CCEEEeeecCCCChHHHHHHHHHHHHCCC
Confidence            9999887666667777788522266666644321100 000 11222 1  223332223333  234667778888775


Q ss_pred             C
Q 017143          155 I  155 (376)
Q Consensus       155 i  155 (376)
                      +
T Consensus       332 ~  332 (365)
T cd08277         332 F  332 (365)
T ss_pred             c
Confidence            4

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=91.25  E-value=2.4  Score=39.89  Aligned_cols=134  Identities=16%  Similarity=0.213  Sum_probs=87.9

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHH-HHHHH-------------------hcCCCCCccCCH
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQA-LKLAN-------------------AFDWPLKVFPGH   66 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~-------------------~~~~~~~~~~~~   66 (376)
                      =+|.|+|+|..+-+.+..+.+.   .-.-++++.|...+.+.. +++.+                   +.-++ ..|+++
T Consensus         2 ~~VLI~GtGPvAiQLAv~lk~~---~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id-~~~~~~   77 (429)
T PF10100_consen    2 GNVLIVGTGPVAIQLAVILKKH---GNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTID-HVFQDY   77 (429)
T ss_pred             CceEEEcCCHHHHHHHHHHHhc---cCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhh-HhhcCH
Confidence            3789999999998877777765   333467777755533222 22222                   11233 567888


Q ss_pred             HHHhhCCCCCEEEEeCCCCccHHHHHH----HHcCCCCCeEEEecCCCCCHHHH--------------------------
Q 017143           67 QELLDSGLCDVVVVSTPNMTHYQILMD----IINHPKPHHVLVEKPLCTTVADC--------------------------  116 (376)
Q Consensus        67 ~~~l~~~~~D~V~i~t~~~~h~~~~~~----al~~~~g~~Vl~EKP~a~~~~e~--------------------------  116 (376)
                      +++..+  -|.+|.|||.+.-.++..+    .|+  .-|+|.+=-|---+--=.                          
T Consensus        78 ~~i~g~--WdtlILavtaDAY~~VL~ql~~~~L~--~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdTr~~  153 (429)
T PF10100_consen   78 EEIEGE--WDTLILAVTADAYLDVLQQLPWEVLK--RVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDTRWS  153 (429)
T ss_pred             HHhccc--ccEEEEEechHHHHHHHHhcCHHHHh--hCCEEEEECcccchHHHHHHHHHhcCCCceEEEeecccccceec
Confidence            888765  8999999998877666554    577  678877766643332222                          


Q ss_pred             ------HHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHc
Q 017143          117 ------KKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKS  152 (376)
Q Consensus       117 ------~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~  152 (376)
                            +-|..+. +   .++++|.++--++....++.+++.
T Consensus       154 d~~~~~~vlt~~v-K---~kiYigSt~~~s~~~~~l~~~~~~  191 (429)
T PF10100_consen  154 DGEQPNRVLTTAV-K---KKIYIGSTHSNSPELDKLCRLLAQ  191 (429)
T ss_pred             cCCCcceehhhhh-h---ceEEEEeCCCCChHHHHHHHHHHH
Confidence                  2233333 2   257888888888888998888874

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=91.20  E-value=1.2  Score=42.78  Aligned_cols=34  Identities=26%  Similarity=0.409  Sum_probs=27.5

Q ss_pred             eEEEEeCChhhHHHHHHhhhhcCCCc-----EEEEEeCCChh
Q 017143            8 KYGIIGMGMMGREHFINLHHLRSQGV-----SVVCIADPHLQ   44 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~~~~~-----~~~~v~d~~~~   44 (376)
                      ||.|||+|.+|-..++.|+..   |+     .-+.|+|.|.-
T Consensus         1 kVlvVGaGGlGcE~lKnLal~---Gv~~g~~G~I~IvD~D~I   39 (435)
T cd01490           1 KVFLVGAGAIGCELLKNFALM---GVGTGESGEITVTDMDNI   39 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHHc---CCCcCCCCeEEEECCCCc
Confidence            689999999999999998886   66     45557887653

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=91.16  E-value=1.4  Score=40.53  Aligned_cols=34  Identities=29%  Similarity=0.333  Sum_probs=28.9

Q ss_pred             eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChh
Q 017143            8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQ   44 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~   44 (376)
                      ||.|||+|.+|...++.|...   ++.-+.++|.|.-
T Consensus         1 kVlIVGaGGlG~EiaKnLal~---Gvg~ItIvD~D~V   34 (312)
T cd01489           1 KVLVVGAGGIGCELLKNLVLT---GFGEIHIIDLDTI   34 (312)
T ss_pred             CEEEECCCHHHHHHHHHHHHh---cCCeEEEEcCCCc
Confidence            689999999999999999876   7777778887654

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=91.05  E-value=0.76  Score=40.73  Aligned_cols=83  Identities=14%  Similarity=0.041  Sum_probs=51.8

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc-CCCCCccCCHHHHhhC-CCCCEEEEeC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF-DWPLKVFPGHQELLDS-GLCDVVVVST   82 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~-~~~D~V~i~t   82 (376)
                      .+.++.|+|.|..+....+....+   +|+++ |+|.+++.   +..  ..+ +.....+...++.+.. +.-++|+|.|
T Consensus        99 p~~~L~IfGaG~va~~la~la~~l---Gf~V~-v~D~R~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~t~vvi~t  169 (246)
T TIGR02964        99 PAPHVVLFGAGHVGRALVRALAPL---PCRVT-WVDSREAE---FPE--DLPDGVATLVTDEPEAEVAEAPPGSYFLVLT  169 (246)
T ss_pred             CCCEEEEECCcHHHHHHHHHHhcC---CCEEE-EEeCCccc---ccc--cCCCCceEEecCCHHHHHhcCCCCcEEEEEe
Confidence            468999999999998877766665   89988 66765541   110  011 1111223446666653 2358999999


Q ss_pred             CCCccHHHHH-HHHc
Q 017143           83 PNMTHYQILM-DIIN   96 (376)
Q Consensus        83 ~~~~h~~~~~-~al~   96 (376)
                      .++.+-..++ .+|+
T Consensus       170 h~h~~D~~~L~~aL~  184 (246)
T TIGR02964       170 HDHALDLELCHAALR  184 (246)
T ss_pred             CChHHHHHHHHHHHh
Confidence            8777654444 4553

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=91.03  E-value=0.44  Score=44.15  Aligned_cols=75  Identities=12%  Similarity=0.145  Sum_probs=44.5

Q ss_pred             CceeEEEEeC-ChhhHHHHHHhhhhc----CCCcEEEEEeCCChhhHHHHH----HHHH----hcCCCCCccCCHHHHhh
Q 017143            5 DTVKYGIIGM-GMMGREHFINLHHLR----SQGVSVVCIADPHLQSRQQAL----KLAN----AFDWPLKVFPGHQELLD   71 (376)
Q Consensus         5 ~~~~v~iiG~-G~~g~~~~~~~~~~~----~~~~~~~~v~d~~~~~~~~~~----~~~~----~~~~~~~~~~~~~~~l~   71 (376)
                      +++||+|+|+ |++|...+..+....    +.+.+|+ +.|+.+.. ++++    ++..    ..+ .+....++.+.++
T Consensus         1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~-L~D~~~~~-~~~~g~~~Dl~d~~~~~~~-~~~~~~~~~~~l~   77 (325)
T cd01336           1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILH-LLDIPPAL-KALEGVVMELQDCAFPLLK-SVVATTDPEEAFK   77 (325)
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEE-EEEcCCcc-ccccceeeehhhccccccC-CceecCCHHHHhC
Confidence            3689999998 999998888777641    0224666 45775421 1121    1110    011 1223467666776


Q ss_pred             CCCCCEEEEeCCC
Q 017143           72 SGLCDVVVVSTPN   84 (376)
Q Consensus        72 ~~~~D~V~i~t~~   84 (376)
                      +  .|+|+++.-.
T Consensus        78 ~--aDiVI~tAG~   88 (325)
T cd01336          78 D--VDVAILVGAM   88 (325)
T ss_pred             C--CCEEEEeCCc
Confidence            5  8999987653

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=90.98  E-value=4.6  Score=33.88  Aligned_cols=109  Identities=9%  Similarity=0.057  Sum_probs=62.1

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-C-CccCCHHHHhhCCCCCEEEEeCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-L-KVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      ..+|.=||||. |..-+......  ++.++++ +|.+++..+.+++.+++.+++ + -...+.+++.....+|+|+... 
T Consensus        43 ~~~vLDiGcGt-G~~s~~la~~~--~~~~V~~-iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-  117 (181)
T TIGR00138        43 GKKVIDIGSGA-GFPGIPLAIAR--PELKLTL-LESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-  117 (181)
T ss_pred             CCeEEEecCCC-CccHHHHHHHC--CCCeEEE-EeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-
Confidence            35888999984 32111111222  5677776 599988666666666666654 2 2235676654445689876543 


Q ss_pred             CCccH----HHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHH
Q 017143           84 NMTHY----QILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAA  123 (376)
Q Consensus        84 ~~~h~----~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a  123 (376)
                       -.+.    +.+.+.|+  .|-.++++.+ .....++..+.+.+
T Consensus       118 -~~~~~~~~~~~~~~Lk--pgG~lvi~~~-~~~~~~~~~~~e~~  157 (181)
T TIGR00138       118 -LASLNVLLELTLNLLK--VGGYFLAYKG-KKYLDEIEEAKRKC  157 (181)
T ss_pred             -hhCHHHHHHHHHHhcC--CCCEEEEEcC-CCcHHHHHHHHHhh
Confidence             1222    22344566  3444555553 34667777776665

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=90.90  E-value=2  Score=38.07  Aligned_cols=36  Identities=19%  Similarity=0.290  Sum_probs=29.6

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChh
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQ   44 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~   44 (376)
                      .-||+|||+|..|...+..|...   ++.-+.++|.|.-
T Consensus        32 ~~~VliiG~GglGs~va~~La~~---Gvg~i~lvD~D~v   67 (245)
T PRK05690         32 AARVLVVGLGGLGCAASQYLAAA---GVGTLTLVDFDTV   67 (245)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc---CCCEEEEEcCCEE
Confidence            46999999999999999888886   6666668887754

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=90.88  E-value=1.2  Score=43.25  Aligned_cols=86  Identities=24%  Similarity=0.279  Sum_probs=53.6

Q ss_pred             eEEEEeCChhhHH-HHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC-CHHHHhhCCCCCEEEEeCCCC
Q 017143            8 KYGIIGMGMMGRE-HFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP-GHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         8 ~v~iiG~G~~g~~-~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      +|-+||.|..|.. .+..|++   .+.+++ ++|.....  ...++ ++.|+.  .+. .-.+.+.  ++|+|+++.--.
T Consensus         1 ~~~~iGiggsGm~~la~~L~~---~G~~v~-~~D~~~~~--~~~~l-~~~gi~--~~~g~~~~~~~--~~d~vV~spgi~   69 (448)
T TIGR01082         1 KIHFVGIGGIGMSGIAEILLN---RGYQVS-GSDIAENA--TTKRL-EALGIP--IYIGHSAENLD--DADVVVVSAAIK   69 (448)
T ss_pred             CEEEEEECHHHHHHHHHHHHH---CCCeEE-EECCCcch--HHHHH-HHCcCE--EeCCCCHHHCC--CCCEEEECCCCC
Confidence            4789999999987 5555555   488876 58876542  23333 345765  332 2234444  389877654434


Q ss_pred             ccHHHHHHHHcCCCCCeEEEe
Q 017143           86 THYQILMDIINHPKPHHVLVE  106 (376)
Q Consensus        86 ~h~~~~~~al~~~~g~~Vl~E  106 (376)
                      ...+...+|.+  +|++|+-|
T Consensus        70 ~~~p~~~~a~~--~~i~v~~~   88 (448)
T TIGR01082        70 DDNPEIVEAKE--RGIPVIRR   88 (448)
T ss_pred             CCCHHHHHHHH--cCCceEeH
Confidence            44466777888  78888744

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=90.87  E-value=0.35  Score=44.77  Aligned_cols=76  Identities=9%  Similarity=0.147  Sum_probs=41.4

Q ss_pred             CceeEEEEeC-ChhhHHHHHHhhhhcCCCcE-----EEEEeCCChhh--H-HHHHHHHHh---cCCCCCccCCHHHHhhC
Q 017143            5 DTVKYGIIGM-GMMGREHFINLHHLRSQGVS-----VVCIADPHLQS--R-QQALKLANA---FDWPLKVFPGHQELLDS   72 (376)
Q Consensus         5 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~-----~~~v~d~~~~~--~-~~~~~~~~~---~~~~~~~~~~~~~~l~~   72 (376)
                      ++.||+|||+ |.+|...+..+...  .-+.     -+.++|..+..  + ..+.++..-   +.-.+..+.+..+.+++
T Consensus         1 ~p~KV~IiGa~G~VG~~~a~~l~~~--~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d   78 (322)
T cd01338           1 KPVRVAVTGAAGQIGYSLLFRIASG--EMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKD   78 (322)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhc--cccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCC
Confidence            4689999999 99999877766654  2232     34578885431  1 122222210   00001223333344444


Q ss_pred             CCCCEEEEeCCC
Q 017143           73 GLCDVVVVSTPN   84 (376)
Q Consensus        73 ~~~D~V~i~t~~   84 (376)
                        .|+|+|+.-.
T Consensus        79 --aDivvitaG~   88 (322)
T cd01338          79 --ADWALLVGAK   88 (322)
T ss_pred             --CCEEEEeCCC
Confidence              7999988653

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=90.87  E-value=5.2  Score=37.26  Aligned_cols=131  Identities=20%  Similarity=0.259  Sum_probs=73.5

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc--C--CHHH----HhhCCCCCEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF--P--GHQE----LLDSGLCDVV   78 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~----~l~~~~~D~V   78 (376)
                      -+|.|.|.|.+|...+...+..   ++..+.++++++++.+    ++.++|.+ ..+  .  ++.+    +.....+|+|
T Consensus       174 ~~vlI~g~g~vG~~a~q~a~~~---G~~~v~~~~~~~~~~~----~~~~~ga~-~~i~~~~~~~~~~l~~~~~~~~~d~v  245 (351)
T cd08233         174 DTALVLGAGPIGLLTILALKAA---GASKIIVSEPSEARRE----LAEELGAT-IVLDPTEVDVVAEVRKLTGGGGVDVS  245 (351)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc---CCCEEEEECCCHHHHH----HHHHhCCC-EEECCCccCHHHHHHHHhCCCCCCEE
Confidence            4789999998888766655554   7733344566666433    33455654 111  1  2222    2222349999


Q ss_pred             EEeCCCCccHHHHHHHHcCCCCCeEEEe---cCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCC
Q 017143           79 VVSTPNMTHYQILMDIINHPKPHHVLVE---KPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSI  155 (376)
Q Consensus        79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~E---KP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~i  155 (376)
                      +-++......+.+.++++.+ |+-+.+-   .|...+      +.... .+ ++.+.-.+.. -...+..+.+++++|.|
T Consensus       246 id~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~------~~~~~-~~-~~~i~g~~~~-~~~~~~~~~~~~~~g~l  315 (351)
T cd08233         246 FDCAGVQATLDTAIDALRPR-GTAVNVAIWEKPISFN------PNDLV-LK-EKTLTGSICY-TREDFEEVIDLLASGKI  315 (351)
T ss_pred             EECCCCHHHHHHHHHhccCC-CEEEEEccCCCCCccC------HHHHH-hh-CcEEEEEecc-CcchHHHHHHHHHcCCC
Confidence            99987666677788888742 5544442   222222      22233 22 3343322211 12467788888888887

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I

Probab=90.82  E-value=1.3  Score=40.86  Aligned_cols=98  Identities=20%  Similarity=0.191  Sum_probs=62.2

Q ss_pred             eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH---hcC---CCCCccC-----------------
Q 017143            8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN---AFD---WPLKVFP-----------------   64 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~---~~~---~~~~~~~-----------------   64 (376)
                      ||||-|.|+||+..++++...+.+++++++|-|...  .+...-+-+   -+|   -++..-+                 
T Consensus         1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~~~--~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i~g~~~i~v~~~   78 (327)
T TIGR01534         1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDLTD--LEYLAYLLKYDSVHGRFEGEVTADEDKGLVVNGKFVIVVASE   78 (327)
T ss_pred             CEEEEccChHHHHHHHHHHhccCCceEEEEEecCCC--HHHHHHHhcccCCCCCCCCcEEecCCceEEECCeEEEEEEec
Confidence            799999999999988876653114799999998632  122222222   011   1111111                 


Q ss_pred             -CHHHHhh-CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecC
Q 017143           65 -GHQELLD-SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKP  108 (376)
Q Consensus        65 -~~~~~l~-~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP  108 (376)
                       +.+++-. +.++|+|+-||......+.+..++++|+ |-|++--|
T Consensus        79 ~dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Ga-k~V~iSap  123 (327)
T TIGR01534        79 RDPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGA-KKVLISAP  123 (327)
T ss_pred             CCcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCC-EEEEeCCC
Confidence             2222211 1269999999999999999999999552 66777666

The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=90.72  E-value=15  Score=34.95  Aligned_cols=89  Identities=13%  Similarity=0.099  Sum_probs=53.8

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC---------------------
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP---------------------   64 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~---------------------   64 (376)
                      -+|.|.|. |.+|...+...+..   +++++++ ++++++.+    +++++|.. .+.+                     
T Consensus       195 ~~vlV~ga~g~iG~a~~~lak~~---G~~vv~~-~~s~~~~~----~~~~~G~~-~~i~~~~~~~~~~~~~~~~~~~~~~  265 (393)
T cd08246         195 DNVLIWGASGGLGSMAIQLARAA---GANPVAV-VSSEEKAE----YCRALGAE-GVINRRDFDHWGVLPDVNSEAYTAW  265 (393)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHc---CCeEEEE-eCCHHHHH----HHHHcCCC-EEEcccccccccccccccchhhhhh
Confidence            48899997 99998877665554   7887765 56665333    33446642 1111                     


Q ss_pred             -----C----HHHHhhCC-CCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEe
Q 017143           65 -----G----HQELLDSG-LCDVVVVSTPNMTHYQILMDIINHPKPHHVLVE  106 (376)
Q Consensus        65 -----~----~~~~l~~~-~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~E  106 (376)
                           +    +.++.... .+|+|+-++.. .....+.++++. .|.-|.+-
T Consensus       266 ~~~~~~~~~~v~~l~~~~~g~d~vid~~g~-~~~~~~~~~l~~-~G~~v~~g  315 (393)
T cd08246         266 TKEARRFGKAIWDILGGREDPDIVFEHPGR-ATFPTSVFVCDR-GGMVVICA  315 (393)
T ss_pred             hhccchHHHHHHHHhCCCCCCeEEEECCch-HhHHHHHHHhcc-CCEEEEEc
Confidence                 0    11222223 58999887664 556777888875 36666663

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=90.70  E-value=5.3  Score=37.63  Aligned_cols=131  Identities=15%  Similarity=0.139  Sum_probs=73.9

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCc-EEEEEeCCChhhHHHHHHHHHhcCCCCCcc--C----CHHHHhh---CCCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGV-SVVCIADPHLQSRQQALKLANAFDWPLKVF--P----GHQELLD---SGLCD   76 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~-~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~l~---~~~~D   76 (376)
                      -+|.|+|+|.+|...+...+..   +. +++ +.++++++.+    +++++|.. ..+  .    ++.+.+.   ...+|
T Consensus       189 ~~VlV~G~g~vG~~a~q~ak~~---G~~~vi-~~~~~~~~~~----~~~~~Ga~-~~i~~~~~~~~~~~~v~~~~~~~~d  259 (369)
T cd08301         189 STVAIFGLGAVGLAVAEGARIR---GASRII-GVDLNPSKFE----QAKKFGVT-EFVNPKDHDKPVQEVIAEMTGGGVD  259 (369)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc---CCCeEE-EEcCCHHHHH----HHHHcCCc-eEEcccccchhHHHHHHHHhCCCCC
Confidence            4789999999999877766654   66 555 4566666433    34556654 222  1    2322222   12589


Q ss_pred             EEEEeCCCCccHHHHHHHHcCCCCCeEEEec-----CCCCCHHHHHHHHHHHHhCCCeEEEEeeccccC--HHHHHHHHH
Q 017143           77 VVVVSTPNMTHYQILMDIINHPKPHHVLVEK-----PLCTTVADCKKVVDAARKRPDILVQVGLEYRYM--PPVAKLIQI  149 (376)
Q Consensus        77 ~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EK-----P~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~--p~~~~~k~~  149 (376)
                      +|+-++........+.++++.+.|+-|++--     ++..+.      .... .  ++.+.-....+|.  ..+..+.++
T Consensus       260 ~vid~~G~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~~~------~~~~-~--~~~i~g~~~~~~~~~~~~~~~~~~  330 (369)
T cd08301         260 YSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKDAVFSTHP------MNLL-N--GRTLKGTLFGGYKPKTDLPNLVEK  330 (369)
T ss_pred             EEEECCCChHHHHHHHHHhhcCCCEEEEECcCCCCcccccCH------HHHh-c--CCeEEEEecCCCChHHHHHHHHHH
Confidence            9999987766777788888821145555432     222221      1122 1  3333332233332  356677788


Q ss_pred             HHcCCC
Q 017143          150 VKSGSI  155 (376)
Q Consensus       150 i~~g~i  155 (376)
                      +.+|.+
T Consensus       331 ~~~g~~  336 (369)
T cd08301         331 YMKKEL  336 (369)
T ss_pred             HHcCCC
Confidence            887765

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=90.69  E-value=1.9  Score=42.36  Aligned_cols=42  Identities=24%  Similarity=0.275  Sum_probs=32.2

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHH
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALK   51 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~   51 (376)
                      .-|+.|+|+|.+|...+..++.+   +.. +-++|+++++++.++.
T Consensus       164 ~akVlViGaG~iGl~Aa~~ak~l---GA~-V~v~d~~~~rle~a~~  205 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAANSL---GAI-VRAFDTRPEVKEQVQS  205 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC---CCE-EEEEeCCHHHHHHHHH
Confidence            46999999999999988888776   566 5568988875444443

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=90.69  E-value=0.45  Score=43.48  Aligned_cols=71  Identities=23%  Similarity=0.254  Sum_probs=40.7

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH-HHHHHHHH---hcCCCCCccCC--HHHHhhCCCCCEEEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSR-QQALKLAN---AFDWPLKVFPG--HQELLDSGLCDVVVV   80 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~---~~~~~~~~~~~--~~~~l~~~~~D~V~i   80 (376)
                      +||+|||+|.+|...+..+...  .-..-..++|+.++.. ..+.++..   -.+.+.+.+.+  |+++   .+.|+|+|
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~--~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~---~~aDiVvi   75 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQ--GLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDL---KGADIVVI   75 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcc--cccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhh---cCCCEEEE
Confidence            4899999999999877777333  2221344788875422 12222221   11222233333  5544   45899999


Q ss_pred             eC
Q 017143           81 ST   82 (376)
Q Consensus        81 ~t   82 (376)
                      +.
T Consensus        76 tA   77 (313)
T COG0039          76 TA   77 (313)
T ss_pred             eC
Confidence            88

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=90.54  E-value=0.57  Score=43.02  Aligned_cols=73  Identities=22%  Similarity=0.222  Sum_probs=42.0

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh-cCCCCCcc-C--CHHHHhhCCCCCEEEEe
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA-FDWPLKVF-P--GHQELLDSGLCDVVVVS   81 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~-~~~~~~~~-~--~~~~~l~~~~~D~V~i~   81 (376)
                      +||+|||+ |.+|...+..+...  +-..-+.++|++ .....+.++..- ....++.+ .  ++.+.+++  .|+|+|+
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~--~~~~elvLiDi~-~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~d--aDivvit   75 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLN--PLVSELALYDIV-NTPGVAADLSHINTPAKVTGYLGPEELKKALKG--ADVVVIP   75 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC--CCCcEEEEEecC-ccceeehHhHhCCCcceEEEecCCCchHHhcCC--CCEEEEe
Confidence            58999999 99999777666654  334445578887 222233344322 11112222 2  23344444  8999988


Q ss_pred             CCC
Q 017143           82 TPN   84 (376)
Q Consensus        82 t~~   84 (376)
                      .-.
T Consensus        76 aG~   78 (310)
T cd01337          76 AGV   78 (310)
T ss_pred             CCC
Confidence            754

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=90.47  E-value=0.78  Score=41.62  Aligned_cols=75  Identities=13%  Similarity=0.100  Sum_probs=45.6

Q ss_pred             CceeEEEEeCChhhHH---HHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc----CC---H----HHHh
Q 017143            5 DTVKYGIIGMGMMGRE---HFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF----PG---H----QELL   70 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~---~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~---~----~~~l   70 (376)
                      +++||+|.|.|. |..   .+.+++.. .-+.++++|....++    +..+|+++|+|+..+    .+   +    .+.|
T Consensus        88 ~~~ri~vl~Sg~-g~nl~al~~~~~~~-~~~~~i~~visn~~~----~~~lA~~~gIp~~~~~~~~~~~~~~~~~~~~~l  161 (286)
T PRK13011         88 ARPKVLIMVSKF-DHCLNDLLYRWRIG-ELPMDIVGVVSNHPD----LEPLAAWHGIPFHHFPITPDTKPQQEAQVLDVV  161 (286)
T ss_pred             cCceEEEEEcCC-cccHHHHHHHHHcC-CCCcEEEEEEECCcc----HHHHHHHhCCCEEEeCCCcCchhhhHHHHHHHH
Confidence            468999999994 432   22222221 135899998765443    666789999983221    12   2    2234


Q ss_pred             hCCCCCEEEEeCCCC
Q 017143           71 DSGLCDVVVVSTPNM   85 (376)
Q Consensus        71 ~~~~~D~V~i~t~~~   85 (376)
                      ...++|+++++.-..
T Consensus       162 ~~~~~Dlivlagy~~  176 (286)
T PRK13011        162 EESGAELVVLARYMQ  176 (286)
T ss_pred             HHhCcCEEEEeChhh
Confidence            455699999887543

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=90.47  E-value=2.4  Score=36.15  Aligned_cols=73  Identities=15%  Similarity=0.067  Sum_probs=45.3

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC--CC-ccCCHHHHhhC--CCCCEEEEe
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP--LK-VFPGHQELLDS--GLCDVVVVS   81 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~l~~--~~~D~V~i~   81 (376)
                      -+|.-+|+|. |..-+...... .+..++++ +|.+++..+.+++-++++++.  +. ...+..+++..  +.+|+|++.
T Consensus        42 ~~vlDlG~Gt-G~~s~~~a~~~-~~~~~v~a-vD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~  118 (198)
T PRK00377         42 DMILDIGCGT-GSVTVEASLLV-GETGKVYA-VDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIG  118 (198)
T ss_pred             CEEEEeCCcC-CHHHHHHHHHh-CCCCEEEE-EECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEEC
Confidence            5789999986 65444433333 14567776 599998777777666677742  11 12455555442  458998885


Q ss_pred             C
Q 017143           82 T   82 (376)
Q Consensus        82 t   82 (376)
                      .
T Consensus       119 ~  119 (198)
T PRK00377        119 G  119 (198)
T ss_pred             C
Confidence            4

>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]

Probab=90.40  E-value=1.2  Score=42.81  Aligned_cols=98  Identities=21%  Similarity=0.262  Sum_probs=62.6

Q ss_pred             eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHH-hhCCCCCEEEEeCCCCc
Q 017143            8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQEL-LDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~D~V~i~t~~~~   86 (376)
                      +|=+||.|.+|..-+..+...  .+.+|.+ +|.....   .-+..++.|++  .|...++- +.+  .|.|++.+--..
T Consensus         9 ~iHfIGIgG~GMsglA~iL~~--~G~~VsG-SD~~~~~---~t~~L~~~G~~--i~~gh~~~ni~~--~~~VV~s~Ai~~   78 (459)
T COG0773           9 KIHFIGIGGIGMSGLAEILLN--LGYKVSG-SDLAESP---MTQRLEALGIE--IFIGHDAENILD--ADVVVVSNAIKE   78 (459)
T ss_pred             eEEEEeeccccHHHHHHHHHh--CCCceEC-ccccccH---HHHHHHHCCCe--EeCCCCHHHcCC--CceEEEecccCC
Confidence            699999999988766655555  6999776 7877663   33344466876  55544433 443  566777666444


Q ss_pred             cHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhC
Q 017143           87 HYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKR  126 (376)
Q Consensus        87 h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~  126 (376)
                      --+-+..|++  +|.+|+-         -++-|.++.+.+
T Consensus        79 ~NpEi~~A~e--~~ipi~~---------r~e~Laelm~~~  107 (459)
T COG0773          79 DNPEIVAALE--RGIPVIS---------RAEMLAELMRFR  107 (459)
T ss_pred             CCHHHHHHHH--cCCCeEc---------HHHHHHHHHhCC
Confidence            3455677888  8888752         344567777433

>PRK13789 phosphoribosylamine--glycine ligase; Provisional

Probab=90.38  E-value=0.96  Score=43.67  Aligned_cols=145  Identities=12%  Similarity=0.013  Sum_probs=70.3

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHH---HhhCCCCCEEEEe
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQE---LLDSGLCDVVVVS   81 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~D~V~i~   81 (376)
                      +++||.|||.|..-...+..+.+.  +....+.+.-.+.-    ....+..+.++ --+.|.++   +..+..+|+|++.
T Consensus         3 ~~~kvLviG~g~rehal~~~~~~~--~~~~~~~~~pgn~g----~~~~~~~~~~~-~~~~d~~~l~~~a~~~~iD~Vv~g   75 (426)
T PRK13789          3 VKLKVLLIGSGGRESAIAFALRKS--NLLSELKVFPGNGG----FPDDELLPADS-FSILDKSSVQSFLKSNPFDLIVVG   75 (426)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhC--CCCCEEEEECCchH----HhccccccccC-cCcCCHHHHHHHHHHcCCCEEEEC
Confidence            368999999996544445555554  55555544433332    11111111122 12345554   4445679999974


Q ss_pred             CCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEE
Q 017143           82 TPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMV  161 (376)
Q Consensus        82 t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~  161 (376)
                      .-...-..++..+-+  .|.+++-=.+.+...+.-+...+..-++.|++..   .+++......+++.+++  +|-+..+
T Consensus        76 ~E~~l~~glad~~~~--~Gip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt~---~~~~~~~~~ea~~~~~~--~~~PvVV  148 (426)
T PRK13789         76 PEDPLVAGFADWAAE--LGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTA---SYKTFTEYSSSLSYLES--EMLPIVI  148 (426)
T ss_pred             CchHHHHHHHHHHHH--cCCCcCCCHHHHHHHHcCHHHHHHHHHHcCCCCC---CeEeeCCHHHHHHHHHh--cCCCEEE
Confidence            433333445555556  6776542111111122222222222244577742   22333345556666653  5655555


Q ss_pred             EE
Q 017143          162 AI  163 (376)
Q Consensus       162 ~~  163 (376)
                      .-
T Consensus       149 Kp  150 (426)
T PRK13789        149 KA  150 (426)
T ss_pred             Ee
Confidence            44

>PRK07877 hypothetical protein; Provisional

Probab=90.24  E-value=1.4  Score=45.38  Aligned_cols=95  Identities=21%  Similarity=0.316  Sum_probs=58.7

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCc-EEEEEeCCCh------------------hhHHHHHHHHHhcC--CCCCcc-
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGV-SVVCIADPHL------------------QSRQQALKLANAFD--WPLKVF-   63 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~-~~~~v~d~~~------------------~~~~~~~~~~~~~~--~~~~~~-   63 (376)
                      .-||+|||+| .|...+..|+..   ++ .-..++|.|.                  .+.+.+++..++.+  +.+..+ 
T Consensus       107 ~~~V~IvG~G-lGs~~a~~Lara---GvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~  182 (722)
T PRK07877        107 RLRIGVVGLS-VGHAIAHTLAAE---GLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFT  182 (722)
T ss_pred             cCCEEEEEec-HHHHHHHHHHHc---cCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEe
Confidence            5799999998 899888888775   42 2233455432                  22222222222222  112222 


Q ss_pred             -----CCHHHHhhCCCCCEEEEeCCCC-ccHHHHHHHHcCCCCCeEEEecC
Q 017143           64 -----PGHQELLDSGLCDVVVVSTPNM-THYQILMDIINHPKPHHVLVEKP  108 (376)
Q Consensus        64 -----~~~~~~l~~~~~D~V~i~t~~~-~h~~~~~~al~~~~g~~Vl~EKP  108 (376)
                           ++++++++.  +|+|+-|+.+. ..+.+...|.+  .|++++..-.
T Consensus       183 ~~i~~~n~~~~l~~--~DlVvD~~D~~~~R~~ln~~a~~--~~iP~i~~~~  229 (722)
T PRK07877        183 DGLTEDNVDAFLDG--LDVVVEECDSLDVKVLLREAARA--RRIPVLMATS  229 (722)
T ss_pred             ccCCHHHHHHHhcC--CCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEcC
Confidence                 257777765  89999999874 44555566788  8899888763

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.11  E-value=2  Score=42.41  Aligned_cols=91  Identities=19%  Similarity=0.115  Sum_probs=52.7

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc-CCCCCccCCHHHHhhCCCCCEEEEeCC-C
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF-DWPLKVFPGHQELLDSGLCDVVVVSTP-N   84 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~D~V~i~t~-~   84 (376)
                      .+|.|+|+|..|...+..|.+.   +.+|. ++|...... ...++.+.. |+.+...+...+.+.  ++|+|++... +
T Consensus         8 ~~i~v~G~G~sG~s~a~~L~~~---G~~v~-~~D~~~~~~-~~~~L~~~~~~~~~~~g~~~~~~~~--~~d~vv~sp~I~   80 (498)
T PRK02006          8 PMVLVLGLGESGLAMARWCARH---GARLR-VADTREAPP-NLAALRAELPDAEFVGGPFDPALLD--GVDLVALSPGLS   80 (498)
T ss_pred             CEEEEEeecHhHHHHHHHHHHC---CCEEE-EEcCCCCch-hHHHHHhhcCCcEEEeCCCchhHhc--CCCEEEECCCCC
Confidence            4799999999998755555554   78876 578654321 122332221 332111122345554  3898877642 2


Q ss_pred             Ccc---HHHHHHHHcCCCCCeEEEe
Q 017143           85 MTH---YQILMDIINHPKPHHVLVE  106 (376)
Q Consensus        85 ~~h---~~~~~~al~~~~g~~Vl~E  106 (376)
                      ..|   .+...+|-+  .|++|+-+
T Consensus        81 ~~~~~~~~~~~~a~~--~~i~v~~~  103 (498)
T PRK02006         81 PLEAALAPLVAAARE--RGIPVWGE  103 (498)
T ss_pred             CcccccCHHHHHHHH--CCCcEEEH
Confidence            233   466777777  78888854

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=90.02  E-value=2.6  Score=38.76  Aligned_cols=78  Identities=21%  Similarity=0.258  Sum_probs=51.9

Q ss_pred             CCCCCceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh---------cCCCCCccCCHHHHh
Q 017143            1 MAANDTVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA---------FDWPLKVFPGHQELL   70 (376)
Q Consensus         1 m~~~~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l   70 (376)
                      |..+...+|+|-|+ |++|.+.+..|...   |..|.|-+ |+++..++.+-+.+-         +--++.-++++++.+
T Consensus         1 m~~~~~~~VcVTGAsGfIgswivk~LL~r---GY~V~gtV-R~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai   76 (327)
T KOG1502|consen    1 MDQDEGKKVCVTGASGFIGSWIVKLLLSR---GYTVRGTV-RDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAI   76 (327)
T ss_pred             CCCCCCcEEEEeCCchHHHHHHHHHHHhC---CCEEEEEE-cCcchhhhHHHHHhcccCcccceEEeccccccchHHHHH
Confidence            55556789999996 88999999988885   88988876 555532222112110         111134578888888


Q ss_pred             hCCCCCEEE-EeCCC
Q 017143           71 DSGLCDVVV-VSTPN   84 (376)
Q Consensus        71 ~~~~~D~V~-i~t~~   84 (376)
                      +-  +|.|+ +++|.
T Consensus        77 ~g--cdgVfH~Asp~   89 (327)
T KOG1502|consen   77 DG--CDGVFHTASPV   89 (327)
T ss_pred             hC--CCEEEEeCccC
Confidence            76  89888 55553

>TIGR00877 purD phosphoribosylamine--glycine ligase

Probab=90.02  E-value=0.98  Score=43.56  Aligned_cols=89  Identities=13%  Similarity=0.082  Sum_probs=46.6

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHH---HhhCCCCCEEEEeCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQE---LLDSGLCDVVVVSTP   83 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~D~V~i~t~   83 (376)
                      +||+|||.|..+...+.+++..  + ..+..++++....  .+ .....+-+. .-+.|.+.   +.+..++|+|+....
T Consensus         1 ~kiliiG~G~~~~~l~~~~~~~--~-~~~~~~~~~~~~~--~~-~~~~~~~~~-~~~~d~~~l~~~~~~~~id~vi~~~e   73 (423)
T TIGR00877         1 MKVLVIGNGGREHALAWKLAQS--P-LVKYVYVAPGNAG--TA-RLAKNKNVA-ISITDIEALVEFAKKKKIDLAVIGPE   73 (423)
T ss_pred             CEEEEECCChHHHHHHHHHHhC--C-CccEEEEECCCHH--Hh-hhccccccc-CCCCCHHHHHHHHHHhCCCEEEECCc
Confidence            5899999999988888877775  3 3333344444321  11 111111111 12345444   444567898875432


Q ss_pred             CCccHHHHHHHHcCCCCCeEE
Q 017143           84 NMTHYQILMDIINHPKPHHVL  104 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl  104 (376)
                      ......++..+-+  .|.+++
T Consensus        74 ~~l~~~~~~~l~~--~gi~~~   92 (423)
T TIGR00877        74 APLVLGLVDALEE--AGIPVF   92 (423)
T ss_pred             hHHHHHHHHHHHH--CCCeEE
Confidence            2222233334444  566655

This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=89.95  E-value=9.1  Score=35.98  Aligned_cols=133  Identities=15%  Similarity=0.135  Sum_probs=74.8

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC------CH----HHHhhCCCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP------GH----QELLDSGLCD   76 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~------~~----~~~l~~~~~D   76 (376)
                      =+|.|.|.|.+|...+...+..   +...+.++++++++.+    ++.++|.. .+++      ++    .++.. ..+|
T Consensus       185 ~~vlI~g~g~vG~~a~~~a~~~---G~~~v~~~~~~~~~~~----~~~~~g~~-~~v~~~~~~~~~~~~l~~~~~-~~~d  255 (365)
T cd05279         185 STCAVFGLGGVGLSVIMGCKAA---GASRIIAVDINKDKFE----KAKQLGAT-ECINPRDQDKPIVEVLTEMTD-GGVD  255 (365)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc---CCCeEEEEeCCHHHHH----HHHHhCCC-eecccccccchHHHHHHHHhC-CCCc
Confidence            3788899999998876665554   6765556677766433    23456654 2221      22    12332 4589


Q ss_pred             EEEEeCCCCccHHHHHHHHc-CCCCCeEEEec-----CCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHH
Q 017143           77 VVVVSTPNMTHYQILMDIIN-HPKPHHVLVEK-----PLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIV  150 (376)
Q Consensus        77 ~V~i~t~~~~h~~~~~~al~-~~~g~~Vl~EK-----P~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i  150 (376)
                      +|+-++........+.++++ . .|+-|.+--     +...+..+   +   . ....+.-...........+..+.+++
T Consensus       256 ~vid~~g~~~~~~~~~~~l~~~-~G~~v~~g~~~~~~~~~~~~~~---~---~-~~~~l~g~~~~~~~~~~~~~~~~~l~  327 (365)
T cd05279         256 YAFEVIGSADTLKQALDATRLG-GGTSVVVGVPPSGTEATLDPND---L---L-TGRTIKGTVFGGWKSKDSVPKLVALY  327 (365)
T ss_pred             EEEECCCCHHHHHHHHHHhccC-CCEEEEEecCCCCCceeeCHHH---H---h-cCCeEEEEeccCCchHhHHHHHHHHH
Confidence            99998876567777888886 5 477666532     22223332   2   2 22121111111223345566677777


Q ss_pred             HcCCCC
Q 017143          151 KSGSIG  156 (376)
Q Consensus       151 ~~g~iG  156 (376)
                      ++|.+.
T Consensus       328 ~~~~l~  333 (365)
T cd05279         328 RQKKFP  333 (365)
T ss_pred             HcCCcc
Confidence            777665

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=89.95  E-value=7.1  Score=36.80  Aligned_cols=91  Identities=12%  Similarity=0.147  Sum_probs=55.8

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCc-EEEEEeCCChhhHHHHHHHHHhcCCCCCcc--C----CHHHHhh---CCCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGV-SVVCIADPHLQSRQQALKLANAFDWPLKVF--P----GHQELLD---SGLCD   76 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~-~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~l~---~~~~D   76 (376)
                      -+|.|+|+|.+|...+...+..   +. ++++ +++++++++    +++++|.. ..+  .    ++.+.+.   ...+|
T Consensus       187 ~~VlV~G~G~iG~~a~q~Ak~~---G~~~Vi~-~~~~~~~~~----~a~~~Ga~-~~i~~~~~~~~~~~~v~~~~~~g~d  257 (368)
T TIGR02818       187 DTVAVFGLGGIGLSVIQGARMA---KASRIIA-IDINPAKFE----LAKKLGAT-DCVNPNDYDKPIQEVIVEITDGGVD  257 (368)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc---CCCeEEE-EcCCHHHHH----HHHHhCCC-eEEcccccchhHHHHHHHHhCCCCC
Confidence            4789999999998877665554   66 5654 577776443    33456654 222  1    2222221   12589


Q ss_pred             EEEEeCCCCccHHHHHHHHcCCCCCeEEEe
Q 017143           77 VVVVSTPNMTHYQILMDIINHPKPHHVLVE  106 (376)
Q Consensus        77 ~V~i~t~~~~h~~~~~~al~~~~g~~Vl~E  106 (376)
                      +|+-++....-...+.++++.+.|+-|++=
T Consensus       258 ~vid~~G~~~~~~~~~~~~~~~~G~~v~~g  287 (368)
T TIGR02818       258 YSFECIGNVNVMRAALECCHKGWGESIIIG  287 (368)
T ss_pred             EEEECCCCHHHHHHHHHHhhcCCCeEEEEe
Confidence            999998865566777888862115656554

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=89.92  E-value=5.2  Score=33.96  Aligned_cols=76  Identities=21%  Similarity=0.128  Sum_probs=48.3

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-C-CccCCHHHHh----hCCCCCEEE
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-L-KVFPGHQELL----DSGLCDVVV   79 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~l----~~~~~D~V~   79 (376)
                      ..++.=||||. |..........  ++..+++ +|.+++.++.+.+-+.+.+++ + -...|..+++    .+..+|.|+
T Consensus        17 ~~~ilDiGcG~-G~~~~~la~~~--p~~~v~g-vD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~   92 (194)
T TIGR00091        17 APLHLEIGCGK-GRFLIDMAKQN--PDKNFLG-IEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVF   92 (194)
T ss_pred             CceEEEeCCCc-cHHHHHHHHhC--CCCCEEE-EEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEE
Confidence            46899999995 54433333444  7788887 588888776666655555544 2 2235666554    233589999


Q ss_pred             EeCCCC
Q 017143           80 VSTPNM   85 (376)
Q Consensus        80 i~t~~~   85 (376)
                      +.-|+.
T Consensus        93 ~~~pdp   98 (194)
T TIGR00091        93 LNFPDP   98 (194)
T ss_pred             EECCCc
Confidence            887643

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK04284 ornithine carbamoyltransferase; Provisional

Probab=89.92  E-value=1.5  Score=40.63  Aligned_cols=76  Identities=11%  Similarity=0.124  Sum_probs=52.8

Q ss_pred             CceeEEEEeCC--hhhHHHHHHhhhhcCCCcEEEEEeCCC----hhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEE
Q 017143            5 DTVKYGIIGMG--MMGREHFINLHHLRSQGVSVVCIADPH----LQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVV   78 (376)
Q Consensus         5 ~~~~v~iiG~G--~~g~~~~~~~~~~~~~~~~~~~v~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V   78 (376)
                      +.+||++||-+  +..+..+..+..+   +++++-++-..    ++-.+++++.+++.|..+..++|++++++.  .|+|
T Consensus       154 ~g~kia~vGD~~~~v~~Sl~~~~~~~---g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~--aDvv  228 (332)
T PRK04284        154 KDIKFTYVGDGRNNVANALMQGAAIM---GMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKG--SDVI  228 (332)
T ss_pred             CCcEEEEecCCCcchHHHHHHHHHHc---CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEE
Confidence            35899999975  4566667767665   88877655332    222345566666777655678999999987  8999


Q ss_pred             EEeCCCC
Q 017143           79 VVSTPNM   85 (376)
Q Consensus        79 ~i~t~~~   85 (376)
                      +.-+..+
T Consensus       229 y~~~w~~  235 (332)
T PRK04284        229 YTDVWVS  235 (332)
T ss_pred             EECCccc
Confidence            9866543

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=89.81  E-value=5.5  Score=41.25  Aligned_cols=142  Identities=17%  Similarity=0.239  Sum_probs=81.1

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH--------hcCC---------C-CCccCCHHH
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN--------AFDW---------P-LKVFPGHQE   68 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~--------~~~~---------~-~~~~~~~~~   68 (376)
                      -||+|||+|.||......++..   +++|+ ++|++++.++++.+..+        +..+         . +...+++++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~---G~~V~-l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  389 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASK---GTPIV-MKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAG  389 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhC---CCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHH
Confidence            4799999999999988777764   88866 78999987655432211        1110         0 233456644


Q ss_pred             HhhCCCCCEEEEeCCCCccHHH--HHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeecc---------
Q 017143           69 LLDSGLCDVVVVSTPNMTHYQI--LMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEY---------  137 (376)
Q Consensus        69 ~l~~~~~D~V~i~t~~~~h~~~--~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~---------  137 (376)
                       ++  +.|+|+=+.+...-...  ..+.-+......||.----++++.+   |.... .++...+-..|-.         
T Consensus       390 -~~--~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~---ia~~~-~~p~r~ig~Hff~P~~~~~lvE  462 (714)
T TIGR02437       390 -FD--NVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISL---LAKAL-KRPENFCGMHFFNPVHRMPLVE  462 (714)
T ss_pred             -hc--CCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH---HHhhc-CCcccEEEEecCCCcccCceEe
Confidence             34  48999999998755332  2222221122356665555556665   55555 4444333222210         


Q ss_pred             -----ccCH-HHHHHHHHHHcCCCCceEEE
Q 017143          138 -----RYMP-PVAKLIQIVKSGSIGQVKMV  161 (376)
Q Consensus       138 -----r~~p-~~~~~k~~i~~g~iG~i~~~  161 (376)
                           ..+| .+..+.++++  .+|+.-.+
T Consensus       463 vv~g~~Ts~~~~~~~~~~~~--~lgk~pv~  490 (714)
T TIGR02437       463 VIRGEKSSDETIATVVAYAS--KMGKTPIV  490 (714)
T ss_pred             ecCCCCCCHHHHHHHHHHHH--HcCCEEEE
Confidence                 1122 3566667766  47866444

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PLN02522 ATP citrate (pro-S)-lyase

Probab=89.79  E-value=2  Score=43.14  Aligned_cols=125  Identities=14%  Similarity=0.109  Sum_probs=76.5

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhh----cCCCcEEEEEeCCChhhHHHHHHH--HH-hcCCCCCccCCHHHHhhCC-CCCE
Q 017143            6 TVKYGIIGMGMMGREHFINLHHL----RSQGVSVVCIADPHLQSRQQALKL--AN-AFDWPLKVFPGHQELLDSG-LCDV   77 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~----~~~~~~~~~v~d~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~l~~~-~~D~   77 (376)
                      +-|-.|.|.+..+   ++.+...    ..+.-.|.|++-+...   ..+++  .+ ..++|  +|++.+|+.+.. ++|+
T Consensus        10 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~iP--Vf~tv~eA~~~~~~~~~   81 (608)
T PLN02522         10 TTQALFYNYKQLP---VQRMLDFDFLCGRETPSVAGIINPGSE---GFQKLFFGQEEIAIP--VHGSIEAACKAHPTADV   81 (608)
T ss_pred             CceeEEEcCcHHH---HHhhhccceeccCCCCeeEEEEcCCCC---cceeEecCCEeeCcc--ccchHHHHHHhCCCCcE
Confidence            4677788887543   2222222    1145677788776554   22222  22 23777  999999999764 7999


Q ss_pred             EEEeCCCCccHHHHHHHHcCCCCCe-EEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeec--cccCHH
Q 017143           78 VVVSTPNMTHYQILMDIINHPKPHH-VLVEKPLCTTVADCKKVVDAARKRPDILVQVGLE--YRYMPP  142 (376)
Q Consensus        78 V~i~t~~~~h~~~~~~al~~~~g~~-Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~--~r~~p~  142 (376)
                      .+|..|+..-.+-+++++.+ +|.. +.|=- -.....+.++|.+.+++. |+. .+|.|  --.+|.
T Consensus        82 ~vifvp~~~a~da~lEa~~a-~GIk~~VIit-eGfpe~d~~~l~~~Ar~~-g~r-lIGPNc~Gii~p~  145 (608)
T PLN02522         82 FINFASFRSAAASSMEALKQ-PTIRVVAIIA-EGVPESDTKQLIAYARAN-NKV-VIGPATVGGIQAG  145 (608)
T ss_pred             EEEeCChHHhHHHHHHHHhh-CCCCEEEEEC-CCCChhhHHHHHHHHHHc-CCE-EECCCCCeeEccC
Confidence            99999999989999988863 2443 33311 112234578899999554 654 34443  344443

>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent

Probab=89.70  E-value=2  Score=36.36  Aligned_cols=74  Identities=18%  Similarity=0.024  Sum_probs=44.5

Q ss_pred             eEEEEeC--ChhhHHHHHHhhhhcCCCcEEEEEe-CCChhhHHHHHHHHHhcCCCCCccC--C----------HHHHhhC
Q 017143            8 KYGIIGM--GMMGREHFINLHHLRSQGVSVVCIA-DPHLQSRQQALKLANAFDWPLKVFP--G----------HQELLDS   72 (376)
Q Consensus         8 ~v~iiG~--G~~g~~~~~~~~~~~~~~~~~~~v~-d~~~~~~~~~~~~~~~~~~~~~~~~--~----------~~~~l~~   72 (376)
                      ||+|+-.  |......+..+.+. .-.++++.|+ ++...   .+.++++++|+|+..++  +          +.+++.+
T Consensus         2 riail~sg~gs~~~~ll~~~~~~-~l~~~I~~vi~~~~~~---~~~~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~   77 (190)
T TIGR00639         2 RIVVLISGNGSNLQAIIDACKEG-KIPASVVLVISNKPDA---YGLERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRA   77 (190)
T ss_pred             eEEEEEcCCChhHHHHHHHHHcC-CCCceEEEEEECCccc---hHHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHh
Confidence            5666655  66666666666553 1346777764 44332   56678889999832211  1          2344556


Q ss_pred             CCCCEEEEeCCCC
Q 017143           73 GLCDVVVVSTPNM   85 (376)
Q Consensus        73 ~~~D~V~i~t~~~   85 (376)
                      ..+|+++++.-..
T Consensus        78 ~~~D~iv~~~~~~   90 (190)
T TIGR00639        78 HEVDLVVLAGFMR   90 (190)
T ss_pred             cCCCEEEEeCcch
Confidence            6799988887544

In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.

>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed

Probab=89.67  E-value=1.2  Score=38.18  Aligned_cols=75  Identities=19%  Similarity=0.105  Sum_probs=43.6

Q ss_pred             eeEEEE--eCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC--C----------HHHHhhC
Q 017143            7 VKYGII--GMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP--G----------HQELLDS   72 (376)
Q Consensus         7 ~~v~ii--G~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~----------~~~~l~~   72 (376)
                      +||+|+  |-|......+.++.+.. ...+++.|+...++.  .+.+++++.|+|+..++  +          +.+.|+.
T Consensus         2 ~ki~vl~sg~gs~~~~ll~~~~~~~-~~~~I~~vvs~~~~~--~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~   78 (200)
T PRK05647          2 KRIVVLASGNGSNLQAIIDACAAGQ-LPAEIVAVISDRPDA--YGLERAEAAGIPTFVLDHKDFPSREAFDAALVEALDA   78 (200)
T ss_pred             ceEEEEEcCCChhHHHHHHHHHcCC-CCcEEEEEEecCccc--hHHHHHHHcCCCEEEECccccCchhHhHHHHHHHHHH
Confidence            445555  55766666666665531 346777764433322  57788999999832211  1          1234555


Q ss_pred             CCCCEEEEeCCC
Q 017143           73 GLCDVVVVSTPN   84 (376)
Q Consensus        73 ~~~D~V~i~t~~   84 (376)
                      .++|+++++.-.
T Consensus        79 ~~~D~iv~~~~~   90 (200)
T PRK05647         79 YQPDLVVLAGFM   90 (200)
T ss_pred             hCcCEEEhHHhh
Confidence            679988886643

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=89.63  E-value=3.9  Score=31.32  Aligned_cols=74  Identities=15%  Similarity=0.079  Sum_probs=45.4

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-CCcc-CCHHHHhh--CCCCCEEEEeC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LKVF-PGHQELLD--SGLCDVVVVST   82 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~l~--~~~~D~V~i~t   82 (376)
                      .+|.-+|+|. |..........  +..++++ +|.++...+.+++..++++.+ +... .+..+.+.  ...+|+|++..
T Consensus        21 ~~vldlG~G~-G~~~~~l~~~~--~~~~v~~-vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~   96 (124)
T TIGR02469        21 DVLWDIGAGS-GSITIEAARLV--PNGRVYA-IERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGG   96 (124)
T ss_pred             CEEEEeCCCC-CHHHHHHHHHC--CCceEEE-EcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECC
Confidence            4899999985 66544445554  5667765 699988777777666666554 2111 23332111  23589998865


Q ss_pred             CC
Q 017143           83 PN   84 (376)
Q Consensus        83 ~~   84 (376)
                      +.
T Consensus        97 ~~   98 (124)
T TIGR02469        97 SG   98 (124)
T ss_pred             cc
Confidence            43

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=89.62  E-value=5.4  Score=41.30  Aligned_cols=112  Identities=21%  Similarity=0.259  Sum_probs=66.7

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH--------hcCC----------CCCccCCHHH
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN--------AFDW----------PLKVFPGHQE   68 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~--------~~~~----------~~~~~~~~~~   68 (376)
                      -||+|||+|.||......++..  .+++|+ ++|++++.++++.+..+        +..+          .+...++++ 
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~--~G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  385 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATK--AGLPVR-IKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYR-  385 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHH--cCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChH-
Confidence            5799999999999888777744  588866 68999886655432211        1111          023456664 


Q ss_pred             HhhCCCCCEEEEeCCCCccHHH--HHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCC
Q 017143           69 LLDSGLCDVVVVSTPNMTHYQI--LMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPD  128 (376)
Q Consensus        69 ~l~~~~~D~V~i~t~~~~h~~~--~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~  128 (376)
                      .+++  .|+|+=+.|...-...  ..+.-+......||+----+.++.+   |.+.+ .+++
T Consensus       386 ~~~~--aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~---la~~~-~~p~  441 (708)
T PRK11154        386 GFKH--ADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQ---IAAAA-ARPE  441 (708)
T ss_pred             Hhcc--CCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH---HHHhc-Cccc
Confidence            3444  8999999997654332  2222121123357765555556665   55555 3434

>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]

Probab=89.50  E-value=0.29  Score=42.34  Aligned_cols=92  Identities=15%  Similarity=0.282  Sum_probs=54.6

Q ss_pred             CceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-C-Ccc-----CCHHHHhhCCCCC
Q 017143            5 DTVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-L-KVF-----PGHQELLDSGLCD   76 (376)
Q Consensus         5 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~-~~~-----~~~~~~l~~~~~D   76 (376)
                      +++||+++|+ |..|+..+..+..+  |.+++..+..+..+    .+++.   +++ . -.|     .|...+-+...+|
T Consensus        18 k~~rv~LlGArGYTGknlv~Lin~H--Pylevthvssrel~----Gqkl~---~ytk~eiqy~~lst~D~~klee~~avd   88 (340)
T KOG4354|consen   18 KDIRVGLLGARGYTGKNLVRLINNH--PYLEVTHVSSRELA----GQKLE---VYTKLEIQYADLSTVDAVKLEEPHAVD   88 (340)
T ss_pred             CCceEEEEeccccchhhHHHHhcCC--CceEEEeeehhhhc----CCccc---CcchhheeecccchhhHHHhhcCCcee
Confidence            5799999997 77899999999999  99999998865332    22211   111 0 011     1222222223467


Q ss_pred             EEEEeCCCCccHHHHHHHHcCCCCCeEEEe
Q 017143           77 VVVVSTPNMTHYQILMDIINHPKPHHVLVE  106 (376)
Q Consensus        77 ~V~i~t~~~~h~~~~~~al~~~~g~~Vl~E  106 (376)
                      ..+.+.|+..-..++. +++.-.||.++++
T Consensus        89 ~wvmaLPn~vckpfv~-~~~s~~gks~iid  117 (340)
T KOG4354|consen   89 HWVMALPNQVCKPFVS-LTESSDGKSRIID  117 (340)
T ss_pred             eeeeecchhhHHHHHH-HHhhcCCceeeee
Confidence            7777777765444333 3332257777764

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=89.49  E-value=14  Score=34.21  Aligned_cols=140  Identities=15%  Similarity=0.121  Sum_probs=77.1

Q ss_pred             eeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-CCccCC--HHHHhh----CCCCCEE
Q 017143            7 VKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LKVFPG--HQELLD----SGLCDVV   78 (376)
Q Consensus         7 ~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~l~----~~~~D~V   78 (376)
                      =+|.|.| +|.+|...+...+..   +..++++..++.    +.+ ++.++|-+ +-.|.+  +.+-+.    ...+|+|
T Consensus       144 ~~VLV~gaaGgVG~~aiQlAk~~---G~~~v~~~~s~~----k~~-~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv  215 (326)
T COG0604         144 ETVLVHGAAGGVGSAAIQLAKAL---GATVVAVVSSSE----KLE-LLKELGADHVINYREEDFVEQVRELTGGKGVDVV  215 (326)
T ss_pred             CEEEEecCCchHHHHHHHHHHHc---CCcEEEEecCHH----HHH-HHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEE
Confidence            3688899 788988877766665   546666665543    334 56666654 112322  444333    2359999


Q ss_pred             EEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeecccc------CHHHHHHHHHHHc
Q 017143           79 VVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRY------MPPVAKLIQIVKS  152 (376)
Q Consensus        79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~------~p~~~~~k~~i~~  152 (376)
                      +-+.-...... .+.+|+. .|+-|.|--+-....-... +.... .+ . ....+....+      .....++-+++++
T Consensus       216 ~D~vG~~~~~~-~l~~l~~-~G~lv~ig~~~g~~~~~~~-~~~~~-~~-~-~~~~g~~~~~~~~~~~~~~~~~l~~~~~~  289 (326)
T COG0604         216 LDTVGGDTFAA-SLAALAP-GGRLVSIGALSGGPPVPLN-LLPLL-GK-R-LTLRGVTLGSRDPEALAEALAELFDLLAS  289 (326)
T ss_pred             EECCCHHHHHH-HHHHhcc-CCEEEEEecCCCCCccccC-HHHHh-hc-c-EEEEEecceecchHHHHHHHHHHHHHHHc
Confidence            99988777766 5666653 4777776554310110111 22222 11 1 2222333222      3556667777777


Q ss_pred             CCCCceEE
Q 017143          153 GSIGQVKM  160 (376)
Q Consensus       153 g~iG~i~~  160 (376)
                      |.+=.+..
T Consensus       290 g~l~~~i~  297 (326)
T COG0604         290 GKLKPVID  297 (326)
T ss_pred             CCCcceec
Confidence            77655544

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=89.48  E-value=13  Score=34.39  Aligned_cols=134  Identities=16%  Similarity=0.191  Sum_probs=75.2

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCC-------HHHHhhCCCCCEEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPG-------HQELLDSGLCDVVV   79 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~D~V~   79 (376)
                      -+|.|.|.|.+|...+..++..  ...+++++. +++++   .+ +.+++|++ ..++.       +.++.....+|+|+
T Consensus       169 ~~vlI~g~~~vg~~~~~~a~~~--g~~~v~~~~-~~~~~---~~-~~~~~g~~-~~~~~~~~~~~~i~~~~~~~~~dvvl  240 (340)
T cd05284         169 STVVVIGVGGLGHIAVQILRAL--TPATVIAVD-RSEEA---LK-LAERLGAD-HVLNASDDVVEEVRELTGGRGADAVI  240 (340)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHh--CCCcEEEEe-CCHHH---HH-HHHHhCCc-EEEcCCccHHHHHHHHhCCCCCCEEE
Confidence            4689999998888776666665  337877654 45542   33 33566754 22221       22233334699999


Q ss_pred             EeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCC
Q 017143           80 VSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIG  156 (376)
Q Consensus        80 i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG  156 (376)
                      -++....+...+.++|.. .|+-+.+-.+-..+...    ...- .+ ++.+. +........+..+.+++++|.+.
T Consensus       241 d~~g~~~~~~~~~~~l~~-~g~~i~~g~~~~~~~~~----~~~~-~~-~~~~~-~~~~~~~~~~~~~~~~l~~g~l~  309 (340)
T cd05284         241 DFVGSDETLALAAKLLAK-GGRYVIVGYGGHGRLPT----SDLV-PT-EISVI-GSLWGTRAELVEVVALAESGKVK  309 (340)
T ss_pred             EcCCCHHHHHHHHHHhhc-CCEEEEEcCCCCCccCH----HHhh-hc-ceEEE-EEecccHHHHHHHHHHHHhCCCC
Confidence            998876677888888874 36555553221111111    1111 22 33322 22222334566777888887765

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>PLN00106 malate dehydrogenase

Probab=89.43  E-value=0.75  Score=42.53  Aligned_cols=74  Identities=15%  Similarity=0.128  Sum_probs=44.4

Q ss_pred             ceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh-cCCCCC---ccCCHHHHhhCCCCCEEEE
Q 017143            6 TVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA-FDWPLK---VFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         6 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~l~~~~~D~V~i   80 (376)
                      +.||+|||+ |.+|......+...  +.+.-+.++|+++ ....+.++..- ....+.   ..+++.+.+.+  .|+|++
T Consensus        18 ~~KV~IiGaaG~VG~~~a~~l~~~--~~~~el~L~Di~~-~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~--aDiVVi   92 (323)
T PLN00106         18 GFKVAVLGAAGGIGQPLSLLMKMN--PLVSELHLYDIAN-TPGVAADVSHINTPAQVRGFLGDDQLGDALKG--ADLVII   92 (323)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhC--CCCCEEEEEecCC-CCeeEchhhhCCcCceEEEEeCCCCHHHHcCC--CCEEEE
Confidence            579999999 99999888777755  4444455778866 21222232210 011112   23345666665  899998


Q ss_pred             eCCC
Q 017143           81 STPN   84 (376)
Q Consensus        81 ~t~~   84 (376)
                      +.-.
T Consensus        93 tAG~   96 (323)
T PLN00106         93 PAGV   96 (323)
T ss_pred             eCCC
Confidence            8653

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=89.43  E-value=1.9  Score=32.54  Aligned_cols=72  Identities=19%  Similarity=0.053  Sum_probs=45.0

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC--C-CccCCH-HHHhhCCCCCEEEEeC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP--L-KVFPGH-QELLDSGLCDVVVVST   82 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~--~-~~~~~~-~~~l~~~~~D~V~i~t   82 (376)
                      -||.-||+|. |...+...+..  ++.++++ +|.+++..+.+++-..+.+..  + -...++ .+.-....+|+|++..
T Consensus         3 ~~vLDlGcG~-G~~~~~l~~~~--~~~~v~g-vD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~   78 (112)
T PF12847_consen    3 GRVLDLGCGT-GRLSIALARLF--PGARVVG-VDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSG   78 (112)
T ss_dssp             CEEEEETTTT-SHHHHHHHHHH--TTSEEEE-EESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECS
T ss_pred             CEEEEEcCcC-CHHHHHHHhcC--CCCEEEE-EeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECC
Confidence            5789999984 55444444445  7899887 599999887777666333332  2 123455 1122224589999877

...

>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2

Probab=89.31  E-value=1.6  Score=41.42  Aligned_cols=86  Identities=19%  Similarity=0.261  Sum_probs=50.7

Q ss_pred             eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHH---HHhhCCCCCEEEEeCCC
Q 017143            8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQ---ELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~D~V~i~t~~   84 (376)
                      ||+|||.|..|..++.+++++   ++++++ +|.++..  .+..++.++-+  .-+.|.+   ++.+..++|+|+.... 
T Consensus         1 kililG~g~~~~~l~~aa~~~---G~~v~~-~d~~~~~--~~~~~ad~~~~--~~~~d~~~l~~~~~~~~id~v~~~~e-   71 (380)
T TIGR01142         1 RVLLLGSGELGKEVAIEAQRL---GVEVIA-VDRYANA--PAMQVAHRSYV--INMLDGDALRAVIEREKPDYIVPEIE-   71 (380)
T ss_pred             CEEEECCCHHHHHHHHHHHHc---CCEEEE-EeCCCCC--chhhhCceEEE--cCCCCHHHHHHHHHHhCCCEEEeccC-
Confidence            799999999999998888776   888775 5666542  23344433211  1245644   4555556998865433 


Q ss_pred             CccHHHHHHHHcCCCCCeEE
Q 017143           85 MTHYQILMDIINHPKPHHVL  104 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~~Vl  104 (376)
                      ......+..+-+  .|.+++
T Consensus        72 ~v~~~~~~~l~~--~g~~~~   89 (380)
T TIGR01142        72 AIATDALFELEK--EGYFVV   89 (380)
T ss_pred             ccCHHHHHHHHh--cCCeeC
Confidence            233333333334  565543

This enzyme is an alternative to PurN (TIGR00639)

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=89.23  E-value=0.73  Score=42.42  Aligned_cols=70  Identities=20%  Similarity=0.284  Sum_probs=41.4

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhcCCCc-EEEEEeCCChhhHHHHHHHH----H---hcCCC--CCccCCHHHHhhCCCC
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLRSQGV-SVVCIADPHLQSRQQALKLA----N---AFDWP--LKVFPGHQELLDSGLC   75 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~-~~~~v~d~~~~~~~~~~~~~----~---~~~~~--~~~~~~~~~~l~~~~~   75 (376)
                      +||+|||+ |.+|...+..+...  +.. +|+ ++|+.+ +.++++..+    .   ..+..  +...+++++ +.+  .
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~--g~~~~v~-lvd~~~-~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~-l~~--a   73 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKE--DVVKEIN-LISRPK-SLEKLKGLRLDIYDALAAAGIDAEIKISSDLSD-VAG--S   73 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhC--CCCCEEE-EEECcc-cccccccccchhhhchhccCCCcEEEECCCHHH-hCC--C
Confidence            58999997 99999888887776  333 455 457643 111222111    1   12222  122346766 555  7


Q ss_pred             CEEEEeCC
Q 017143           76 DVVVVSTP   83 (376)
Q Consensus        76 D~V~i~t~   83 (376)
                      |+|+++..
T Consensus        74 DiViitag   81 (309)
T cd05294          74 DIVIITAG   81 (309)
T ss_pred             CEEEEecC
Confidence            99998876

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=89.18  E-value=6.9  Score=40.45  Aligned_cols=113  Identities=22%  Similarity=0.256  Sum_probs=66.3

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHH--------HhcCC---------C-CCccCCHHH
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLA--------NAFDW---------P-LKVFPGHQE   68 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~--------~~~~~---------~-~~~~~~~~~   68 (376)
                      -||+|||+|.||......++..  .+++|+ ++|++++.++++.+..        ++..+         . +...+++++
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~--~G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  381 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATK--AGIPVR-IKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRG  381 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHH--cCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHH
Confidence            5799999999999887777643  478866 7899988665442211        11111         0 234566753


Q ss_pred             HhhCCCCCEEEEeCCCCccHHH--HHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCe
Q 017143           69 LLDSGLCDVVVVSTPNMTHYQI--LMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDI  129 (376)
Q Consensus        69 ~l~~~~~D~V~i~t~~~~h~~~--~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~  129 (376)
                       ++  +.|+|+=+.|...-...  ..+.-+.....-|+.----+.++.+   |.+.. .+++.
T Consensus       382 -~~--~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~---la~~~-~~p~r  437 (699)
T TIGR02440       382 -FK--DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQ---IAAAA-SRPEN  437 (699)
T ss_pred             -hc--cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHH---HHHhc-CCccc
Confidence             44  48999999998754332  2222221122356665555556665   55555 44343

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=89.12  E-value=1  Score=46.14  Aligned_cols=75  Identities=13%  Similarity=0.057  Sum_probs=51.9

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH-----HHHHHHHHhcCCCCCccCC-----HHHHhhCCCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSR-----QQALKLANAFDWPLKVFPG-----HQELLDSGLCD   76 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~-----~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~D   76 (376)
                      |||.++|++.+|...+..|.+.   +.++++|+..-+.+.     ...+++|++.|+|+....+     ..+.|.+..+|
T Consensus         1 mkivf~g~~~~a~~~l~~L~~~---~~~i~~V~t~pd~~~~~~~~~~v~~~a~~~~ip~~~~~~~~~~~~~~~l~~~~~D   77 (660)
T PRK08125          1 MKAVVFAYHDIGCVGIEALLAA---GYEIAAVFTHTDNPGENHFFGSVARLAAELGIPVYAPEDVNHPLWVERIRELAPD   77 (660)
T ss_pred             CeEEEECCCHHHHHHHHHHHHC---CCcEEEEEeCCCCCcCCCCcCHHHHHHHHcCCcEEeeCCCCcHHHHHHHHhcCCC
Confidence            5899999999999888888763   789998885322111     1367889999998322222     23445556799


Q ss_pred             EEEEeCCC
Q 017143           77 VVVVSTPN   84 (376)
Q Consensus        77 ~V~i~t~~   84 (376)
                      +++++.-.
T Consensus        78 ~iv~~~~~   85 (660)
T PRK08125         78 VIFSFYYR   85 (660)
T ss_pred             EEEEcccc
Confidence            99887653

>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional

Probab=89.07  E-value=4.9  Score=34.80  Aligned_cols=67  Identities=25%  Similarity=0.350  Sum_probs=38.7

Q ss_pred             ceeEEEEeCChhhHHHHHHh-hhhc--CCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeC
Q 017143            6 TVKYGIIGMGMMGREHFINL-HHLR--SQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~-~~~~--~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t   82 (376)
                      .+|||||=+|++|...+-.| ...+  .+++++.-+.+-..-.-+.+.             +....++++-+||.|++.+
T Consensus         2 vvKiGiiKlGNig~s~~idl~lDErAdRedI~vrv~gsGaKm~pe~~~-------------~~~~~~~~~~~pDf~i~is   68 (277)
T PRK00994          2 VVKIGIIKLGNIGMSPVIDLLLDERADREDIDVRVVGSGAKMGPEEVE-------------EVVKKMLEEWKPDFVIVIS   68 (277)
T ss_pred             eEEEEEEEecccchHHHHHHHHHhhhcccCceEEEeccCCCCCHHHHH-------------HHHHHHHHhhCCCEEEEEC
Confidence            58999999999997544433 2222  256775543332211111111             1133455556799999999


Q ss_pred             CCC
Q 017143           83 PNM   85 (376)
Q Consensus        83 ~~~   85 (376)
                      ||.
T Consensus        69 PN~   71 (277)
T PRK00994         69 PNP   71 (277)
T ss_pred             CCC
Confidence            974

>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase

Probab=89.02  E-value=2.3  Score=41.41  Aligned_cols=90  Identities=13%  Similarity=0.023  Sum_probs=52.9

Q ss_pred             eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCcc
Q 017143            8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMTH   87 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~h   87 (376)
                      +|=+||.|.+|..-+..+...  .+++|+ ++|..+... ....+ ++.|+.+..-.+.+.++.  ++|+|+++.--...
T Consensus         1 ~~hfigigG~gm~~la~~l~~--~G~~V~-~~D~~~~~~-~~~~l-~~~gi~~~~~~~~~~~~~--~~d~vV~SpgI~~~   73 (448)
T TIGR01081         1 HIHILGICGTFMGGLAMIAKQ--LGHEVT-GSDANVYPP-MSTQL-EAQGIEIIEGFDAAQLEP--KPDLVVIGNAMKRG   73 (448)
T ss_pred             CEEEEEECHHhHHHHHHHHHh--CCCEEE-EECCCCCcH-HHHHH-HHCCCEEeCCCCHHHCCC--CCCEEEECCCCCCC
Confidence            356899999998766655555  689976 588765321 11233 345765111123344333  37877665533333


Q ss_pred             HHHHHHHHcCCCCCeEEEe
Q 017143           88 YQILMDIINHPKPHHVLVE  106 (376)
Q Consensus        88 ~~~~~~al~~~~g~~Vl~E  106 (376)
                      .+...+|.+  .|++|+-|
T Consensus        74 ~~~~~~a~~--~~i~v~~~   90 (448)
T TIGR01081        74 NPCVEAVLN--LNLPYTSG   90 (448)
T ss_pred             CHHHHHHHH--CCCCEEeH
Confidence            456667778  78888755

Alternate name: murein tripeptide ligase

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=88.93  E-value=3.9  Score=36.54  Aligned_cols=90  Identities=20%  Similarity=0.275  Sum_probs=56.0

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcE-EEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVS-VVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~-~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      -++.|.|+|.+|...+...+..   +++ ++++ ++++++   .. +++++|........-+.......+|.|+.++...
T Consensus        99 ~~vlI~g~g~vg~~~i~~a~~~---g~~~vi~~-~~~~~~---~~-~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~~  170 (277)
T cd08255          99 ERVAVVGLGLVGLLAAQLAKAA---GAREVVGV-DPDAAR---RE-LAEALGPADPVAADTADEIGGRGADVVIEASGSP  170 (277)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc---CCCcEEEE-CCCHHH---HH-HHHHcCCCccccccchhhhcCCCCCEEEEccCCh
Confidence            4688999999888876666665   566 6654 556553   32 5555662112222222333444699999888777


Q ss_pred             ccHHHHHHHHcCCCCCeEEE
Q 017143           86 THYQILMDIINHPKPHHVLV  105 (376)
Q Consensus        86 ~h~~~~~~al~~~~g~~Vl~  105 (376)
                      .+...+..+++. .|+-+.+
T Consensus       171 ~~~~~~~~~l~~-~g~~~~~  189 (277)
T cd08255         171 SALETALRLLRD-RGRVVLV  189 (277)
T ss_pred             HHHHHHHHHhcC-CcEEEEE
Confidence            778888888874 3555544

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PRK10637 cysG siroheme synthase; Provisional

Probab=88.87  E-value=1.9  Score=42.06  Aligned_cols=87  Identities=16%  Similarity=0.094  Sum_probs=55.7

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC--CCccCCHHHHhhCCCCCEEEEeCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP--LKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      ..||.|||.|.+|.+-+..|...   +.+++.|. +.-.  +..++++++..+.  -+-|.  ++.++  +.++|++||.
T Consensus        12 ~~~vlvvGgG~vA~rk~~~ll~~---ga~v~vis-p~~~--~~~~~l~~~~~i~~~~~~~~--~~dl~--~~~lv~~at~   81 (457)
T PRK10637         12 DRDCLLVGGGDVAERKARLLLDA---GARLTVNA-LAFI--PQFTAWADAGMLTLVEGPFD--ESLLD--TCWLAIAATD   81 (457)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC---CCEEEEEc-CCCC--HHHHHHHhCCCEEEEeCCCC--hHHhC--CCEEEEECCC
Confidence            47999999999998878777775   66766443 3322  1355565544443  12333  23344  4899999998


Q ss_pred             CC-ccHHHHHHHHcCCCCCeEE
Q 017143           84 NM-THYQILMDIINHPKPHHVL  104 (376)
Q Consensus        84 ~~-~h~~~~~~al~~~~g~~Vl  104 (376)
                      +. ....+...|-+  +|+.|-
T Consensus        82 d~~~n~~i~~~a~~--~~~lvN  101 (457)
T PRK10637         82 DDAVNQRVSEAAEA--RRIFCN  101 (457)
T ss_pred             CHHHhHHHHHHHHH--cCcEEE
Confidence            74 66666666766  666654

>COG5495 Uncharacterized conserved protein [Function unknown]

Probab=88.85  E-value=3.2  Score=35.91  Aligned_cols=93  Identities=23%  Similarity=0.317  Sum_probs=56.0

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ++.+++||+|..|+..+....+   ..++.-+|..++++   .++.+++-|+-|+.....-.|+     .++|++-+|..
T Consensus        10 ~v~~~~vgtgrl~ra~~~ra~h---~~~~cs~i~srS~~---~a~~LaE~~~a~p~d~~~~ael-----~~~vfv~vpd~   78 (289)
T COG5495          10 RVVVGIVGTGRLGRAALLRADH---VVVACSAISSRSRD---RAQNLAETYVAPPLDVAKSAEL-----LLLVFVDVPDA   78 (289)
T ss_pred             eeEEEEeecchHHHHHHHHhcc---hheeehhhhhcCHH---HHhhchhccCCCccchhhChhh-----hceEEecchHH
Confidence            6899999999999874433333   36888888888887   6777887776552111111111     35666666665


Q ss_pred             ccHHHHHHHHcCCCCCeEEEecCCCC
Q 017143           86 THYQILMDIINHPKPHHVLVEKPLCT  111 (376)
Q Consensus        86 ~h~~~~~~al~~~~g~~Vl~EKP~a~  111 (376)
                      .-...+-.-+.  ++-.|.+--..+.
T Consensus        79 ~~s~vaa~~~~--rpg~iv~HcSga~  102 (289)
T COG5495          79 LYSGVAATSLN--RPGTIVAHCSGAN  102 (289)
T ss_pred             HHHHHHHhccc--CCCeEEEEccCCC
Confidence            44444444455  4555555544443

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=88.83  E-value=6.7  Score=40.69  Aligned_cols=112  Identities=16%  Similarity=0.236  Sum_probs=66.9

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHH--------HHhcCCC----------CCccCCHHH
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKL--------ANAFDWP----------LKVFPGHQE   68 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~--------~~~~~~~----------~~~~~~~~~   68 (376)
                      -||+|||+|.||......++..   +++|+ ++|++++.++++.+.        .++..+.          ++..+++++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~---G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  389 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASK---GVPVI-MKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAG  389 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhC---CCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHH
Confidence            4799999999999887777764   88866 789999876544321        1111110          234566754


Q ss_pred             HhhCCCCCEEEEeCCCCccH--HHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCe
Q 017143           69 LLDSGLCDVVVVSTPNMTHY--QILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDI  129 (376)
Q Consensus        69 ~l~~~~~D~V~i~t~~~~h~--~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~  129 (376)
                       ++  +.|+|+=+.|...-.  ++..+.-+......|++----+.++.+   |.+.. .++..
T Consensus       390 -~~--~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~---la~~~-~~p~r  445 (715)
T PRK11730        390 -FE--RVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISL---LAKAL-KRPEN  445 (715)
T ss_pred             -hc--CCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHH---HHhhc-CCCcc
Confidence             44  489999999976543  333332221122346655555556665   55555 44443

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=88.78  E-value=1.4  Score=40.41  Aligned_cols=68  Identities=19%  Similarity=0.083  Sum_probs=41.9

Q ss_pred             EEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc-------CCC-CCccCCHHHHhhCCCCCEEEE
Q 017143            9 YGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF-------DWP-LKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         9 v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      |+|||+|.+|...+..++..  +-+.-+.++|+++++   ++..+..+       ... +...++++ .+++  .|+|+|
T Consensus         1 i~iiGaG~VG~~~a~~l~~~--~~~~el~l~D~~~~~---~~g~~~DL~~~~~~~~~~~i~~~~~~~-~l~~--aDiVIi   72 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAK--GLASELVLVDVNEEK---AKGDALDLSHASAFLATGTIVRGGDYA-DAAD--ADIVVI   72 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhc--CCCCEEEEEeCCccH---HHHHHHhHHHhccccCCCeEEECCCHH-HhCC--CCEEEE
Confidence            58999999999877767665  444545688998874   33332211       111 11135565 4444  799999


Q ss_pred             eCCC
Q 017143           81 STPN   84 (376)
Q Consensus        81 ~t~~   84 (376)
                      +...
T Consensus        73 tag~   76 (300)
T cd00300          73 TAGA   76 (300)
T ss_pred             cCCC
Confidence            8764

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>TIGR00658 orni_carb_tr ornithine carbamoyltransferase

Probab=88.76  E-value=2.2  Score=39.19  Aligned_cols=73  Identities=16%  Similarity=0.173  Sum_probs=49.8

Q ss_pred             CceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCC----ChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEE
Q 017143            5 DTVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADP----HLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVV   79 (376)
Q Consensus         5 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~   79 (376)
                      +.++|++||- +...+..+..+...   +++++-++-+    .+.-.+.+++++++.|..+..+++.++++++  .|+|+
T Consensus       147 ~g~~v~~vGd~~~v~~Sl~~~l~~~---g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvvy  221 (304)
T TIGR00658       147 KGVKVVYVGDGNNVCNSLMLAGAKL---GMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKG--ADVIY  221 (304)
T ss_pred             CCcEEEEEeCCCchHHHHHHHHHHc---CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEE
Confidence            3589999996 55666777777776   6787755522    2222234455566667544578999999987  89999


Q ss_pred             EeC
Q 017143           80 VST   82 (376)
Q Consensus        80 i~t   82 (376)
                      .-.
T Consensus       222 ~~~  224 (304)
T TIGR00658       222 TDV  224 (304)
T ss_pred             EcC
Confidence            854

Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.

>PF00479 G6PD_N: Glucose-6-phosphate dehydrogenase, NAD binding domain; InterPro: IPR022674 Glucose-6-phosphate dehydrogenase (1

Probab=88.67  E-value=0.73  Score=38.83  Aligned_cols=48  Identities=15%  Similarity=0.282  Sum_probs=34.1

Q ss_pred             CEEEEeCCCCccHHHHHHHHcCC--CC----CeEEEecCCCCCHHHHHHHHHHH
Q 017143           76 DVVVVSTPNMTHYQILMDIINHP--KP----HHVLVEKPLCTTVADCKKVVDAA  123 (376)
Q Consensus        76 D~V~i~t~~~~h~~~~~~al~~~--~g----~~Vl~EKP~a~~~~e~~~l~~~a  123 (376)
                      -+.++++||..=..++...-++|  .+    .-|.+|||++.+.+.|++|-+..
T Consensus       107 rifYLAvPP~~f~~i~~~L~~~~l~~~~~g~~RiVvEKPFG~Dl~SA~~Ln~~l  160 (183)
T PF00479_consen  107 RIFYLAVPPSLFGPIARNLSEAGLNEEPNGWSRIVVEKPFGRDLESARELNDQL  160 (183)
T ss_dssp             EEEEE-S-GGGHHHHHHHHHHHT-S-TSSS-EEEEESSTSTSSHHHHHHHHHHH
T ss_pred             eEEEeccCHHHHHHHHHHHHHHhcccccCCceEEEEeCCCCCCHHHHHHHHHHH
Confidence            47889999987665555432211  23    46999999999999999999887

1.1.49 from EC) (G6PDH) is a ubiquitous protein, present in bacteria and all eukaryotic cell types []. The enzyme catalyses the the first step in the pentose pathway, i.e. the conversion of glucose-6-phosphate to gluconolactone 6-phosphate in the presence of NADP, producing NADPH. The ubiquitous expression of the enzyme gives it a major role in the production of NADPH for the many NADPH-mediated reductive processes in all cells []. Deficiency of G6PDH is a common genetic abnormality affecting millions of people worldwide. Many sequence variants, most caused by single point mutations, are known, exhibiting a wide variety of phenotypes []. This entry represents the NAD-binding domain of glucose-6-phosphate dehydrogenase.; GO: 0004345 glucose-6-phosphate dehydrogenase activity, 0050661 NADP binding, 0006006 glucose metabolic process, 0055114 oxidation-reduction process; PDB: 4EM5_C 4E9I_A 2DPG_A 1E77_A 1E7M_A 1H9B_A 1E7Y_A 1DPG_B 1H93_A 1H9A_A ....

>PRK07236 hypothetical protein; Provisional

Probab=88.53  E-value=0.6  Score=44.38  Aligned_cols=40  Identities=18%  Similarity=0.110  Sum_probs=33.0

Q ss_pred             CCCCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChh
Q 017143            1 MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQ   44 (376)
Q Consensus         1 m~~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~   44 (376)
                      |+.|++.+|+|||.|..|......|++.   +++++ |+++.+.
T Consensus         1 ~~~~~~~~ViIVGaG~aGl~~A~~L~~~---G~~v~-v~E~~~~   40 (386)
T PRK07236          1 MTHMSGPRAVVIGGSLGGLFAALLLRRA---GWDVD-VFERSPT   40 (386)
T ss_pred             CCCCCCCeEEEECCCHHHHHHHHHHHhC---CCCEE-EEecCCC
Confidence            8888899999999999998888778775   78865 7777653

>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated

Probab=88.52  E-value=2.7  Score=40.03  Aligned_cols=87  Identities=18%  Similarity=0.290  Sum_probs=50.6

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc-CCCCCccCCHH---HHhhCCCCCEEEE
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF-DWPLKVFPGHQ---ELLDSGLCDVVVV   80 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~l~~~~~D~V~i   80 (376)
                      ++++|+|||.|..|..++.+++++   +++++. +|.++..  ....++.++ -++   +.|.+   ++++...+|+|+.
T Consensus        11 ~~~~ilIiG~g~~~~~~~~a~~~~---G~~v~~-~~~~~~~--~~~~~ad~~~~~~---~~d~~~l~~~~~~~~id~vi~   81 (395)
T PRK09288         11 SATRVMLLGSGELGKEVAIEAQRL---GVEVIA-VDRYANA--PAMQVAHRSHVID---MLDGDALRAVIEREKPDYIVP   81 (395)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC---CCEEEE-EeCCCCC--chHHhhhheEECC---CCCHHHHHHHHHHhCCCEEEE
Confidence            357999999999999888887775   888774 5555542  222333332 222   34544   4555556998775


Q ss_pred             eCCCCccHHHHHHHHcCCCCCeE
Q 017143           81 STPNMTHYQILMDIINHPKPHHV  103 (376)
Q Consensus        81 ~t~~~~h~~~~~~al~~~~g~~V  103 (376)
                      ..-+ .....+..+.+  .|..+
T Consensus        82 ~~e~-~~~~~~~~l~~--~g~~~  101 (395)
T PRK09288         82 EIEA-IATDALVELEK--EGFNV  101 (395)
T ss_pred             eeCc-CCHHHHHHHHh--cCCee
Confidence            4433 22333334444  55554

>PLN02427 UDP-apiose/xylose synthase

Probab=88.48  E-value=1.7  Score=41.23  Aligned_cols=37  Identities=19%  Similarity=0.231  Sum_probs=28.9

Q ss_pred             CceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChh
Q 017143            5 DTVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQ   44 (376)
Q Consensus         5 ~~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~   44 (376)
                      +++||.|.| +|++|...+..|.+.  .+.+|+++ +++.+
T Consensus        13 ~~~~VlVTGgtGfIGs~lv~~L~~~--~g~~V~~l-~r~~~   50 (386)
T PLN02427         13 KPLTICMIGAGGFIGSHLCEKLMTE--TPHKVLAL-DVYND   50 (386)
T ss_pred             cCcEEEEECCcchHHHHHHHHHHhc--CCCEEEEE-ecCch
Confidence            467999999 599999999888875  45788876 55544

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=88.48  E-value=21  Score=37.14  Aligned_cols=74  Identities=14%  Similarity=0.117  Sum_probs=48.9

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH--------hcCC----------CCCccCCHHH
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN--------AFDW----------PLKVFPGHQE   68 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~--------~~~~----------~~~~~~~~~~   68 (376)
                      -||+|||+|.||......++..   +++|+ ++|++++.++++.+..+        +..+          .+...+++++
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~---G~~V~-l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  411 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDK---GLKTV-LKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSG  411 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhC---CCcEE-EecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence            5799999999999887777664   88876 78999987655432211        1111          0234566754


Q ss_pred             HhhCCCCCEEEEeCCCCcc
Q 017143           69 LLDSGLCDVVVVSTPNMTH   87 (376)
Q Consensus        69 ~l~~~~~D~V~i~t~~~~h   87 (376)
                       +++  .|+|+=+.+.+.-
T Consensus       412 -~~~--aDlViEAv~E~l~  427 (737)
T TIGR02441       412 -FKN--ADMVIEAVFEDLS  427 (737)
T ss_pred             -hcc--CCeehhhccccHH
Confidence             443  7888888776544

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=88.29  E-value=0.68  Score=42.11  Aligned_cols=59  Identities=22%  Similarity=0.259  Sum_probs=39.0

Q ss_pred             eeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143            7 VKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         7 ~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      |||.|+| .|.+|......+...   +++++++ ++.            ++++  .-.+.+.+++.+.+||+|+.|.-
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~---~~~v~~~-~r~------------~~dl--~d~~~~~~~~~~~~pd~Vin~aa   60 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKER---GYEVIAT-SRS------------DLDL--TDPEAVAKLLEAFKPDVVINCAA   60 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTT---SEEEEEE-STT------------CS-T--TSHHHHHHHHHHH--SEEEE---
T ss_pred             CEEEEECCCCHHHHHHHHHHhhC---CCEEEEe-Cch------------hcCC--CCHHHHHHHHHHhCCCeEeccce
Confidence            7999999 599999888777764   7888876 443            2222  24456677888767999998863

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed

Probab=88.28  E-value=0.66  Score=50.24  Aligned_cols=80  Identities=19%  Similarity=0.250  Sum_probs=46.5

Q ss_pred             CCCC-CceeEEEEeCChh-----------hHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh-cCCCCCccCCHH
Q 017143            1 MAAN-DTVKYGIIGMGMM-----------GREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA-FDWPLKVFPGHQ   67 (376)
Q Consensus         1 m~~~-~~~~v~iiG~G~~-----------g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~   67 (376)
                      ||.. +..||.|||.|.+           |...+++|++.   +++++.+ +.++.....-..++.. |-.| ...+.+.
T Consensus         1 m~~~~~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~---G~~vi~v-~~np~~~~~d~~~ad~~y~ep-~~~e~l~   75 (1068)
T PRK12815          1 MPKDTDIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEE---GYQVVLV-NPNPATIMTDPAPADTVYFEP-LTVEFVK   75 (1068)
T ss_pred             CCCCCCCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHc---CCEEEEE-eCCcchhhcCcccCCeeEECC-CCHHHHH
Confidence            6654 3479999999985           45677777775   9998865 6666421110111111 1111 1123456


Q ss_pred             HHhhCCCCCEEEEeCCCC
Q 017143           68 ELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus        68 ~~l~~~~~D~V~i~t~~~   85 (376)
                      ++++..++|+|+.....+
T Consensus        76 ~ii~~e~~D~Iip~~gg~   93 (1068)
T PRK12815         76 RIIAREKPDALLATLGGQ   93 (1068)
T ss_pred             HHHHHhCcCEEEECCCCc
Confidence            666777899988754433

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=88.25  E-value=3.6  Score=37.70  Aligned_cols=87  Identities=22%  Similarity=0.239  Sum_probs=56.6

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      =+|.|.|+|.+|...+..++..   +++++++ +.++++.    ++++++|.. .. .++++......+|+|+-++....
T Consensus       157 ~~vlV~g~g~vg~~~~q~a~~~---G~~vi~~-~~~~~~~----~~~~~~g~~-~~-~~~~~~~~~~~~d~vid~~g~~~  226 (319)
T cd08242         157 DKVAVLGDGKLGLLIAQVLALT---GPDVVLV-GRHSEKL----ALARRLGVE-TV-LPDEAESEGGGFDVVVEATGSPS  226 (319)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc---CCeEEEE-cCCHHHH----HHHHHcCCc-EE-eCccccccCCCCCEEEECCCChH
Confidence            4788999999998876666554   7887655 4555532    333447765 22 22222233345999999987777


Q ss_pred             cHHHHHHHHcCCCCCeEEE
Q 017143           87 HYQILMDIINHPKPHHVLV  105 (376)
Q Consensus        87 h~~~~~~al~~~~g~~Vl~  105 (376)
                      ..+.+.++++  .+-++.+
T Consensus       227 ~~~~~~~~l~--~~g~~v~  243 (319)
T cd08242         227 GLELALRLVR--PRGTVVL  243 (319)
T ss_pred             HHHHHHHHhh--cCCEEEE
Confidence            7888888998  5445554

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>PRK02102 ornithine carbamoyltransferase; Validated

Probab=88.03  E-value=2.5  Score=39.22  Aligned_cols=74  Identities=18%  Similarity=0.191  Sum_probs=50.6

Q ss_pred             CceeEEEEeCC--hhhHHHHHHhhhhcCCCcEEEEEeCCC----hhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEE
Q 017143            5 DTVKYGIIGMG--MMGREHFINLHHLRSQGVSVVCIADPH----LQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVV   78 (376)
Q Consensus         5 ~~~~v~iiG~G--~~g~~~~~~~~~~~~~~~~~~~v~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V   78 (376)
                      +.+||++||-+  ...+..+..+..+   +++++-++-..    ++-.+.++++++..|..+..+++.+++++.  .|+|
T Consensus       154 ~g~~va~vGd~~~~v~~Sl~~~~~~~---g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~--aDvv  228 (331)
T PRK02102        154 KGLKLAYVGDGRNNMANSLMVGGAKL---GMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKG--ADVI  228 (331)
T ss_pred             CCCEEEEECCCcccHHHHHHHHHHHc---CCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEE
Confidence            35899999986  4556667777766   67877555322    222244556666677655578999999987  8999


Q ss_pred             EEeCC
Q 017143           79 VVSTP   83 (376)
Q Consensus        79 ~i~t~   83 (376)
                      +.-+.
T Consensus       229 yt~~w  233 (331)
T PRK02102        229 YTDVW  233 (331)
T ss_pred             EEcCc
Confidence            98644

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=88.02  E-value=2.9  Score=42.06  Aligned_cols=90  Identities=20%  Similarity=0.295  Sum_probs=53.5

Q ss_pred             CCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhC-CCCCEEEEe
Q 017143            3 ANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDS-GLCDVVVVS   81 (376)
Q Consensus         3 ~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~D~V~i~   81 (376)
                      .+...||||||.|..|+..+.+.+++   +++++.+ |.++..  .+..++.++-+  .-|+|.+.+++- .++|+|.+.
T Consensus        19 ~~~~k~IgIIGgGqlg~mla~aA~~l---G~~Vi~l-d~~~~a--pa~~~AD~~~v--~~~~D~~~l~~~a~~~dvIt~e   90 (577)
T PLN02948         19 GVSETVVGVLGGGQLGRMLCQAASQM---GIKVKVL-DPLEDC--PASSVAARHVV--GSFDDRAAVREFAKRCDVLTVE   90 (577)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHC---CCEEEEE-eCCCCC--chhhhCceeee--CCCCCHHHHHHHHHHCCEEEEe
Confidence            34567999999999999988888887   8997764 666542  34444433222  245776555321 137877665


Q ss_pred             CCCCccHHHHHHHHcCCCCCeE
Q 017143           82 TPNMTHYQILMDIINHPKPHHV  103 (376)
Q Consensus        82 t~~~~h~~~~~~al~~~~g~~V  103 (376)
                      ..+- ..+.+..+-+  .|..|
T Consensus        91 ~e~v-~~~~l~~le~--~gi~v  109 (577)
T PLN02948         91 IEHV-DVDTLEALEK--QGVDV  109 (577)
T ss_pred             cCCC-CHHHHHHHHh--cCCcc
Confidence            4432 2334433334  45543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	376
3ezy_A	344	Crystal Structure Of Probable Dehydrogenase Tm_0414		1e-22
1zh8_A	340	Crystal Structure Of Oxidoreductase (tm0312) From T		2e-12
3nt2_A	344	Crystal Structure Of Myo-Inositol Dehydrogenase Fro		6e-12
3mz0_A	344	Crystal Structure Of Apo Myo-Inositol Dehydrogenase		2e-11
3nto_A	344	Crystal Structure Of K97v Mutant Myo-Inositol Dehyd		6e-11
3ec7_A	357	Crystal Structure Of Putative Dehydrogenase From Sa		1e-10
4had_A	350	Crystal Structure Of Probable Oxidoreductase Protei		1e-10
3q2k_A	370	Crystal Structure Of The Wlba Dehydrogenase From Bo		2e-10
3q2i_A	354	Crystal Structure Of The Wlba Dehydrognase From Chr		1e-09
3cea_A	346	Crystal Structure Of Myo-Inositol 2-Dehydrogenase (		6e-09
3e1k_A	465	Crystal Structure Of Kluyveromyces Lactis Gal80p In		2e-08
2nvw_A	479	Crystal Sctucture Of Transcriptional Regulator Gal8		2e-08
3ip3_A	337	Structure Of Putative Oxidoreductase (Tm_0425) From		2e-08
1evj_A	352	Crystal Structure Of Glucose-Fructose Oxidoreductas		3e-08
1h6d_A	433	Oxidized Precursor Form Of Glucose-Fructose Oxidore		4e-08
3e18_A	359	Crystal Structure Of Nad-Binding Protein From Liste		4e-08
3m2t_A	359	The Crystal Structure Of Dehydrogenase From Chromob		5e-08
1ryd_A	387	Crystal Structure Of Glucose-Fructose Oxidoreductas		5e-08
1ofg_A	381	Glucose-Fructose Oxidoreductase Length = 381		5e-08
2glx_A	332	Crystal Structure Analysis Of Bacterial 1,5-Af Redu		1e-07
3moi_A	387	The Crystal Structure Of The Putative Dehydrogenase		2e-07
3gdo_A	358	Crystal Structure Of Putative Oxidoreductase Yvaa F		2e-07
3gfg_A	367	Structure Of Putative Oxidoreductase Yvaa From Baci		3e-07
4h3v_A	390	Crystal Structure Of Oxidoreductase Domain Protein		3e-07
3v2u_A	438	Crystal Structure Of The Yeast Gal Regulon Complex		4e-07
3bts_A	438	Crystal Structure Of A Ternary Complex Of The Trans		4e-07
3btu_A	438	Crystal Structure Of The Super-Repressor Mutant Of		4e-07
3dty_A	398	Crystal Structure Of An Oxidoreductase From Pseudom		9e-07
4hkt_A	331	Crystal Structure Of A Putative Myo-Inositol Dehydr		1e-06
3fhl_A	362	Crystal Structure Of A Putative Oxidoreductase From		5e-06
3evn_A	329	Crystal Structure Of Putative Oxidoreductase From S		3e-05
3e82_A	364	Crystal Structure Of A Putative Oxidoreductase From		3e-05
3uuw_A	308	1.63 Angstrom Resolution Crystal Structure Of Dehyd		3e-05
3kux_A	352	Structure Of The Ypo2259 Putative Oxidoreductase Fr		1e-04
3hnp_A	353	Crystal Structure Of An Oxidoreductase From Bacillu		2e-04
4fb5_A	393	Crystal Structure Of A Probable Oxidoreduxtase Prot		2e-04
1tlt_A	319	Crystal Structure Of A Putative Oxidoreductase (Vir		2e-04
3fd8_A	359	Crystal Structure Of An Oxidoreductase From Enteroc		4e-04
1ydw_A	362	X-Ray Structure Of Gene Product From Arabidopsis Th		4e-04
3i23_A	349	Crystal Structure Of An Oxidoreductase (GfoIDHMOCA		4e-04
3oqb_A	383	Crystal Structure Of Putative Oxidoreductase From B		5e-04
3e9m_A	330	Crystal Structure Of An Oxidoreductase From Enteroc		6e-04

>pdb|3EZY|A Chain A, Crystal Structure Of Probable Dehydrogenase Tm_0414 From Thermotoga Maritima Length = 344

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 178/368 (48%), Gaps = 36/368 (9%)
Query: 6   TVKYGIIGMGMMGREHFINLHHLRSQGVSVVC-IADPHLQSRQQALKLANAFDWPLKVFP 64
           +++ G+IG+G +G  H  NL  +    +  +  + +  L+  ++ L +  A+  P     
Sbjct: 2   SLRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDP----- 56
Query: 65  GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAAR 124
              EL++    D V+V +   TH ++++      K  HV  EKPL   +AD  ++++  +
Sbjct: 57  --HELIEDPNVDAVLVCSSTNTHSELVIACAKAKK--HVFCEKPLSLNLADVDRMIEETK 112
Query: 125 KRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQ--VKMVAIREHRFPFLVKVNDWNRFNE 182
           K  D+++  G   R+     KL + V++G+IG+  V  +  R+   P L    D+ R   
Sbjct: 113 K-ADVILFTGFNRRFDRNFKKLKEAVENGTIGKPHVLRITSRDPAPPPL----DYIRV-- 165
Query: 183 NTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEF 242
            +GG  ++   H FD+ R  +G     V A G+V V+ +     GK  D+ D A V++ F
Sbjct: 166 -SGGIFLDMTIHDFDMARYIMGEEVEEVFADGSVLVDEE----IGKAGDV-DTAVVVLRF 219
Query: 243 ENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAED 302
           ++G+ G++D    A    + Q I V G+ G+  A          T E G    + L    
Sbjct: 220 KSGALGVIDNSRRAVYGYD-QRIEVFGSKGRIFADNVRETTVVLTDEQGDRGSRYLYFFL 278
Query: 303 DRIEYEGLHHGSSYLEHL-NFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFI 361
           +R       +  SYLE L  F+  +  K  + PAV  +DG +++ +G AA+ S+E+ R +
Sbjct: 279 ER-------YRDSYLEELKTFIKNV--KSGEPPAVSGEDGKMALLLGYAAKKSLEEKRSV 329
Query: 362 AIEEVMEE 369
            +EEV+ E
Sbjct: 330 KLEEVIGE 337

>pdb|1ZH8|A Chain A, Crystal Structure Of Oxidoreductase (tm0312) From Thermotoga Maritima At 2.50 A Resolution Length = 340

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 126/278 (45%), Gaps = 39/278 (14%)
Query: 7   VKYGIIGMGMMGREHFI----NLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKV 62
           ++ GI+G G+  RE  +    NL HL      +  +     ++R  A + A     P  V
Sbjct: 19  IRLGIVGCGIAARELHLPALKNLSHL----FEITAVTS---RTRSHAEEFAKXVGNP-AV 70
Query: 63  FPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDA 122
           F  ++ELL+SGL D V ++ P   +   +   +   K  HV+ EKP+ T V   KKVV+ 
Sbjct: 71  FDSYEELLESGLVDAVDLTLPVELNLPFIEKALR--KGVHVICEKPISTDVETGKKVVEL 128
Query: 123 ARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIG-------QVKMVAIREHRFPFLVKVN 175
           + K  +  V +   +R++P   K  ++V+SG+IG       Q+ +     +++       
Sbjct: 129 SEKS-EKTVYIAENFRHVPAFWKAKELVESGAIGDPVFXNWQIWVGXDENNKYVH----T 183
Query: 176 DWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDN 235
           DW +  ++ GG L +   H     RL +G   +  +++ A D++    +  G      D 
Sbjct: 184 DWRKKPKHVGGFLSDGGVHHAAAXRLILGE--IEWISAVAKDLS---PLLGGX-----DF 233
Query: 236 AYVIVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGK 273
              I EFENG+ G   +    +G+   +   + G  GK
Sbjct: 234 LSSIFEFENGTVGNYTISYSLKGN---ERFEITGTKGK 268

>pdb|3NT2|A Chain A, Crystal Structure Of Myo-Inositol Dehydrogenase From Bacillus Subtilis With Bound Cofactor Length = 344

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 155/362 (42%), Gaps = 38/362 (10%)
Query: 6   TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPG 65
           +++ G+IG G +G+EH IN    +  G  +V + D + ++ Q   K+   +     V+P 
Sbjct: 2   SLRIGVIGTGAIGKEH-INRITNKLSGAEIVAVTDVNQEAAQ---KVVEQYQLNATVYPN 57
Query: 66  HQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARK 125
              LL     D V+V++    H   ++  I   K  +V  EKPL TT   C ++V+   K
Sbjct: 58  DDSLLADENVDAVLVTSWGPAHESSVLKAIKAQK--YVFCEKPLATTAEGCMRIVEEEIK 115
Query: 126 RPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENTG 185
               LVQVG   RY     +L + + +  IG+  M+    HR P    V D    N  T 
Sbjct: 116 VGKRLVQVGFMRRYDSGYVQLKEALDNHVIGEPLMIHCA-HRNP---TVGD----NYTTD 167
Query: 186 GTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENG 245
             +V+   H  D++   V  +        +V V +  +  N  +P + D   V++E + G
Sbjct: 168 MAVVDTLVHEIDVLHWLVNDD------YESVQVIYPKKSKNA-LPHLKDPQIVVIETKGG 220
Query: 246 ---SRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAED 302
              +  +   C +    + E    +VG  G  +   P SI   + R+ GR     L    
Sbjct: 221 IVINAEIYVNCKYGYDIQCE----IVGEDGIIKLPEPSSI---SLRKEGRFSTDIL---- 269
Query: 303 DRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIA 362
             ++++     +  +E  +F+ +I+ KG +V      DG I+     A   + E G+   
Sbjct: 270 --MDWQRRFVAAYDVEIQDFIDSIQKKG-EVSGPTAWDGYIAAVTTDACVKAQESGQKEK 326
Query: 363 IE 364
           +E
Sbjct: 327 VE 328

>pdb|3MZ0|A Chain A, Crystal Structure Of Apo Myo-Inositol Dehydrogenase From Bacillus Subtilis Length = 344

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 153/362 (42%), Gaps = 38/362 (10%)
Query: 6   TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPG 65
           +++ G+IG G +G+EH IN    +  G  +V + D + ++ Q   K+   +     V+P 
Sbjct: 2   SLRIGVIGTGAIGKEH-INRITNKLSGAEIVAVTDVNQEAAQ---KVVEQYQLNATVYPN 57
Query: 66  HQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARK 125
              LL     D V+V++    H   ++  I   K  +V  EKPL TT   C ++V+   K
Sbjct: 58  DDSLLADENVDAVLVTSWGPAHESSVLKAIKAQK--YVFCEKPLATTAEGCXRIVEEEIK 115
Query: 126 RPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENTG 185
               LVQVG   RY     +L + + +  IG+   +    HR P    V D    N  T 
Sbjct: 116 VGKRLVQVGFXRRYDSGYVQLKEALDNHVIGEPLXIHCA-HRNP---TVGD----NYTTD 167
Query: 186 GTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENG 245
             +V+   H  D++   V  +        +V V +  +  N  +P + D   V++E + G
Sbjct: 168 XAVVDTLVHEIDVLHWLVNDD------YESVQVIYPKKSKNA-LPHLKDPQIVVIETKGG 220
Query: 246 ---SRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAED 302
              +  +   C +    + E    +VG  G  +   P SI   + R+ GR     L    
Sbjct: 221 IVINAEIYVNCKYGYDIQCE----IVGEDGIIKLPEPSSI---SLRKEGRFSTDILX--- 270
Query: 303 DRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIA 362
              +++     +  +E  +F+ +I+ KG +V      DG I+     A   + E G+   
Sbjct: 271 ---DWQRRFVAAYDVEIQDFIDSIQKKG-EVSGPTAWDGYIAAVTTDACVKAQESGQKEK 326
Query: 363 IE 364
           +E
Sbjct: 327 VE 328

>pdb|3NTO|A Chain A, Crystal Structure Of K97v Mutant Myo-Inositol Dehydrogenase From Bacillus Subtilis Length = 344

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 154/362 (42%), Gaps = 38/362 (10%)
Query: 6   TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPG 65
           +++ G+IG G +G+EH IN    +  G  +V + D + ++ Q   K+   +     V+P 
Sbjct: 2   SLRIGVIGTGAIGKEH-INRITNKLSGAEIVAVTDVNQEAAQ---KVVEQYQLNATVYPN 57
Query: 66  HQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARK 125
              LL     D V+V++    H   ++  I   K  +V  E PL TT   C ++V+   K
Sbjct: 58  DDSLLADENVDAVLVTSWGPAHESSVLKAIKAQK--YVFCEVPLATTAEGCMRIVEEEIK 115
Query: 126 RPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENTG 185
               LVQVG   RY     +L + + +  IG+  M+    HR P    V D    N  T 
Sbjct: 116 VGKRLVQVGFMRRYDSGYVQLKEALDNHVIGEPLMIHCA-HRNP---TVGD----NYTTD 167
Query: 186 GTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENG 245
             +V+   H  D++   V  +        +V V +  +  N  +P + D   V++E + G
Sbjct: 168 MAVVDTLVHEIDVLHWLVNDD------YESVQVIYPKKSKNA-LPHLKDPQIVVIETKGG 220
Query: 246 ---SRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAED 302
              +  +   C +    + E    +VG  G  +   P SI   + R+ GR     L    
Sbjct: 221 IVINAEIYVNCKYGYDIQCE----IVGEDGIIKLPEPSSI---SLRKEGRFSTDIL---- 269
Query: 303 DRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIA 362
             ++++     +  +E  +F+ +I+ KG +V      DG I+     A   + E G+   
Sbjct: 270 --MDWQRRFVAAYDVEIQDFIDSIQKKG-EVSGPTAWDGYIAAVTTDACVKAQESGQKEK 326
Query: 363 IE 364
           +E
Sbjct: 327 VE 328

>pdb|3EC7|A Chain A, Crystal Structure Of Putative Dehydrogenase From Salmonella Typhimurium Lt2 Length = 357

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 10/136 (7%)
Query: 27  HLRS-----QGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVS 81
           HLR       GV VV + D      Q AL   + +    K +  + +L++    +VV+++
Sbjct: 38  HLRRLANTVSGVEVVAVCDIVAGRAQAAL---DKYAIEAKDYNDYHDLINDKDVEVVIIT 94
Query: 82  TPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMP 141
             N  H  + +  +N  K  +V  EKPL  T ADC++V++A +K     VQ+G   RY  
Sbjct: 95  ASNEAHADVAVAALNANK--YVFCEKPLAVTAADCQRVIEAEQKNGKRXVQIGFXRRYDK 152
Query: 142 PVAKLIQIVKSGSIGQ 157
              +L  I+ SG IGQ
Sbjct: 153 GYVQLKNIIDSGEIGQ 168

>pdb|4HAD|A Chain A, Crystal Structure Of Probable Oxidoreductase Protein From Rhizobium Etli Cfn 42 Length = 350

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 99/229 (43%), Gaps = 12/229 (5%)
Query: 7   VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGH 66
           +++GII    +GR++ +      ++   V  IA   L    +A + A+ F  P   F  +
Sbjct: 24  LRFGIISTAKIGRDNVVPAIQ-DAENCVVTAIASRDLT---RAREXADRFSVP-HAFGSY 78
Query: 67  QELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKR 126
           +E L S + D V +  P   H +  +   +  K  HV+ EKPL     D   V+ AAR R
Sbjct: 79  EEXLASDVIDAVYIPLPTSQHIEWSIKAADAGK--HVVCEKPLALKAGDIDAVI-AARDR 135
Query: 127 PDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVK-VNDWNRFNENTG 185
             ++V       Y P   K+  ++  G+IG ++ V   +  F +  +  ++     E  G
Sbjct: 136 NKVVVTEAYXITYSPVWQKVRSLIDEGAIGSLRHV---QGAFTYFNRDASNXRNIPELGG 192
Query: 186 GTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIID 234
           G L +   +     R   G  P+R+ A+   D +   ++Y+    D  D
Sbjct: 193 GGLPDIGVYPVXSTRFSTGKEPLRIQANTERDPDFGTDIYSSVKADFDD 241

>pdb|3Q2K|A Chain A, Crystal Structure Of The Wlba Dehydrogenase From Bordetella Pertussis In Complex With Nadh And Udp-Glcnaca Length = 370

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 80/364 (21%), Positives = 147/364 (40%), Gaps = 44/364 (12%)
Query: 7   VKYGIIGMGMMGREHF--INLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP 64
           +++G++G G + + H   I  H  R++ V + C  +P      +AL+ A A     + F 
Sbjct: 31  IRFGLVGCGRISKNHIGAIAQHGDRAELVEI-CDTNP------EALQAAEAAT-GARPFS 82
Query: 65  GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAAR 124
              ++L  G  D +V++TP+  H    +++    +  HV+ EKP+ T   D K++V A  
Sbjct: 83  SLSDMLAQGNADALVLATPSGLHPWQAIEVAQAGR--HVVSEKPMATRWEDGKRMVKAC- 139
Query: 125 KRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIR--EHRFPFLVKVNDWNRFNE 182
               + + V  + R    +  + + ++ G  G++ MV +     R         W    E
Sbjct: 140 DEAGVRLFVVKQNRRNATLQLVKKAIEQGRFGRIYMVTVNVFWTRPQEYYDAARWRGKWE 199
Query: 183 NTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEF 242
             GG  + +  H+ DL+   VG  P+  + +    +  + E          D     + +
Sbjct: 200 WDGGAFMNQASHYVDLLDWLVG--PVESVYAYTATLARRIEAE--------DTGVAALRW 249
Query: 243 ENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLK--- 299
            +G+ G +++ M       E  I ++G  G          VR       R D        
Sbjct: 250 RHGAMGSINVTMLTYPQNLEGSITILGEKG---------TVRVGGVAVNRIDEWKFAEPH 300
Query: 300 AEDDRIEYEGLHHGSSY-----LEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLS 354
            +DD+I        S Y     L + N ++ +R  G   P  D ++GL S+A+  A   S
Sbjct: 301 PDDDKIREANYETTSVYGFGHPLYYDNVINCLR--GDCEPETDGREGLQSLALLTAIYRS 358
Query: 355 IEKG 358
              G
Sbjct: 359 ARDG 362

>pdb|3Q2I|A Chain A, Crystal Structure Of The Wlba Dehydrognase From Chromobactrium Violaceum In Complex With Nadh And Udp-Glcnaca At 1.50 A Resolution Length = 354

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 147/367 (40%), Gaps = 40/367 (10%)
Query: 7   VKYGIIGMGMMGREHFINL--HHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP 64
           +++ ++G G +   HF  L  H  R++ + V C  DP   + + A++   A         
Sbjct: 14  IRFALVGCGRIANNHFGALEKHADRAELIDV-CDIDP--AALKAAVERTGA--------R 62
Query: 65  GHQELLD---SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVD 121
           GH  L D       D+V+++TP+  H      I       HV+ EKP+ T   D  ++V 
Sbjct: 63  GHASLTDMLAQTDADIVILTTPSGLH--PTQSIECSEAGFHVMTEKPMATRWEDGLEMVK 120
Query: 122 AARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIR--EHRFPFLVKVNDWNR 179
           AA K    L  V  + R    +  L + ++    G++ MV +     R         W  
Sbjct: 121 AADKAKKHLFVVK-QNRRNATLQLLKRAMQEKRFGRIYMVNVNVFWTRPQEYYDAAGWRG 179
Query: 180 FNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVI 239
             E  GG  + +  H+ DL+   +G  P+  + +    +    E        + D   V 
Sbjct: 180 TWEFDGGAFMNQASHYVDLLDWLIG--PVESVQAYTATLARNIE--------VEDTGTVS 229
Query: 240 VEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGK---GEAFVPESIVRFATREAGREDVQ 296
           V++ +G+ G +++ M       E  I ++G  G    G   V E I  +   E    D +
Sbjct: 230 VKWRSGALGSMNVTMLTYPKNLEGSITILGEKGSVRVGGVAVNE-IQHWEFSEPHAMDEE 288
Query: 297 TLKAEDDRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIE 356
              A        G  H    L + N +  +R  G   P  D ++GL S+ + +A  LS  
Sbjct: 289 IKDASYATTSVYGFGHP---LYYDNVIKTMR--GEATPETDGREGLKSLELLIAMYLSAR 343
Query: 357 KGRFIAI 363
            GR +++
Sbjct: 344 DGRRVSL 350

>pdb|3CEA|A Chain A, Crystal Structure Of Myo-Inositol 2-Dehydrogenase (Np_786804.1) From Lactobacillus Plantarum At 2.40 A Resolution Length = 346

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 84/372 (22%), Positives = 149/372 (40%), Gaps = 49/372 (13%)
Query: 7   VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGH 66
           ++  IIG+G +G  H     HL ++   V  +A   L S Q  L+ A         +  +
Sbjct: 9   LRAAIIGLGRLGERH---ARHLVNKIQGVKLVAACALDSNQ--LEWAKNELGVETTYTNY 63
Query: 67  QELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKR 126
           ++ +D+   D + +  P   H +  +   N     +V  EKPL     +  +     +  
Sbjct: 64  KDXIDTENIDAIFIVAPTPFHPEXTIYAXN--AGLNVFCEKPLGLDFNEVDEXAKVIKSH 121
Query: 127 PDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRF--NENT 184
           P+ + Q G   RY        +IV +G IG  K++  R +    +     + +F    ++
Sbjct: 122 PNQIFQSGFXRRYDDSYRYAKKIVDNGDIG--KIIYXRGYGIDPISGXESFTKFATEADS 179
Query: 185 GGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFEN 244
           GG  V+   H  DL+R F G +P  V A G           N   P + D    I EFE 
Sbjct: 180 GGIFVDXNIHDIDLIRWFTGQDP--VQAYGLTS--------NIAAPQLAD----IGEFET 225
Query: 245 G------SRGMLDLCMFAEGSK--NEQEIVVVGNTGK---GEAFVPESIVRFATREAGRE 293
           G      S G++   +    +   N+ E+ V G+ G    GE      +  F  +   R 
Sbjct: 226 GVAQLKXSDGVIATLIGGRHAAHGNQVELEVXGSNGWVRIGEHPDLNRVTVFNDQGVVRP 285
Query: 294 DVQTLKAEDDRIEYEGLHHGSSYLEHL-NFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQ 352
            +Q+           G    +++ + + +F++ +     K P V + DG+ ++ I  A Q
Sbjct: 286 SLQSF----------GERFDTAFTDEVQDFVNNVIV--GKQPEVTVDDGIKALKIAKACQ 333
Query: 353 LSIEKGRFIAIE 364
            S   G+ + I+
Sbjct: 334 QSANIGKLVDIQ 345

>pdb|3E1K|A Chain A, Crystal Structure Of Kluyveromyces Lactis Gal80p In Complex With The Acidic Activation Domain Of Gal4p Length = 465

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 84/170 (49%), Gaps = 21/170 (12%)
Query: 7   VKYGIIGM----GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQA-----LKLANAFD 57
           ++ G +G+      + + HF+ +  L SQ   +V + +P L+S  Q      LK A  FD
Sbjct: 18  IRVGFVGLTSGKSWVAKTHFLAIQQLSSQ-FQIVALYNPTLKSSLQTIEQLQLKHATGFD 76
Query: 58  WPLKVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPH----HVLVEKPLCTTV 113
             L+ F  ++++      D++VVS     HY+++ +I+ H   +    ++ VE  L  +V
Sbjct: 77  -SLESFAQYKDI------DMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASV 129
Query: 114 ADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAI 163
              +++   +++R ++   + L+ R  P + +  +++  G IG +  + I
Sbjct: 130 QQAEELYSISQQRANLQTIICLQGRKSPYIVRAKELISEGCIGDINSIEI 179

>pdb|2NVW|A Chain A, Crystal Sctucture Of Transcriptional Regulator Gal80p From Kluyveromymes Lactis Length = 479

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 13  GMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQA-----LKLANAFDWPLKVFPGHQ 67
           G   + + HF+ +  L SQ   +V + +P L+S  Q      LK A  FD  L+ F  ++
Sbjct: 50  GKSWVAKTHFLAIQQLSSQ-FQIVALYNPTLKSSLQTIEQLQLKHATGFD-SLESFAQYK 107
Query: 68  ELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPH----HVLVEKPLCTTVADCKKVVDAA 123
           ++      D++VVS     HY+++ +I+ H   +    ++ VE  L  +V   +++   +
Sbjct: 108 DI------DMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSIS 161
Query: 124 RKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAI 163
           ++R ++   + L+ R  P + +  +++  G IG +  + I
Sbjct: 162 QQRANLQTIICLQGRKSPYIVRAKELISEGCIGDINSIEI 201

>pdb|3IP3|A Chain A, Structure Of Putative Oxidoreductase (Tm_0425) From Thermotoga Maritima Length = 337

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 134/308 (43%), Gaps = 35/308 (11%)
Query: 61  KVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVV 120
           K +    E L+    D++V++T    + +IL++ +   +  H  VEKP+ TT  D +K+ 
Sbjct: 54  KKYNNWWEXLEKEKPDILVINTVFSLNGKILLEALE--RKIHAFVEKPIATTFEDLEKIR 111
Query: 121 DAARK-RPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNR 179
              +K R ++        RY P      ++V  G++G++++V  ++     L +  D+ +
Sbjct: 112 SVYQKVRNEVFFTAXFGIRYRPHFLTAKKLVSEGAVGEIRLVNTQKSY--KLGQRPDFYK 169
Query: 180 FNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVI 239
             E  GGT+     H  D +    G   + V A+ +        ++N    ++   A   
Sbjct: 170 KRETYGGTIPWVGIHAIDWIHWITGKKFLSVYATHS-------RLHNSGHGELETTALCH 222
Query: 240 VEFENGSRGMLDL-CMFAEG--SKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQ 296
              EN     L +  +  +G  + ++    +VG  G  E  + E +  F T E G  +V 
Sbjct: 223 FTLENEVFASLSIDYLRPQGAPTHDDDRXRIVGTRGIVEV-INERV--FLTDEKGHREVP 279
Query: 297 TLKAEDDRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIE 356
            +  E  +I +E            +FL  IR +G     V  +D +++  I + A+LS +
Sbjct: 280 LV--EKGQI-FE------------DFLREIRGQGK--CXVTPEDSILTTEIALKARLSAD 322
Query: 357 KGRFIAIE 364
            G+ + IE
Sbjct: 323 TGQIVLIE 330

>pdb|1EVJ|A Chain A, Crystal Structure Of Glucose-Fructose Oxidoreductase (Gfor) Delta1-22 S64d Length = 352

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 11/149 (7%)
Query: 76  DVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGL 135
           D V +  PN  H +  +      K  HV+ EKP+ T+VADC++++DAA+     L+ +G 
Sbjct: 71  DAVYIILPNSLHAEFAIRAFKAGK--HVMCEKPMATSVADCQRMIDAAKAANKKLM-IGY 127
Query: 136 EYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVND----WN-RFNENTGGTLVE 190
              Y P     +++++   +G++ MV         ++  ND    W  R     GG+L++
Sbjct: 128 RCHYDPMNRAAVKLIRENQLGKLGMVTTDNSD---VMDQNDPAQQWRLRRELAGGGSLMD 184
Query: 191 KCCHFFDLMRLFVGSNPMRVMASGAVDVN 219
              +  +  R  +G  P+ V A    D N
Sbjct: 185 IGIYGLNGTRYLLGEEPIEVRAYTYSDPN 213

>pdb|1H6D|A Chain A, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase From Zymomonas Mobilis Complexed With Glycerol Length = 433

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 13/155 (8%)
Query: 76  DVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGL 135
           D V +  PN  H +  +      K  HV+ EKP+ T+VADC++++DAA+     L+ +G 
Sbjct: 152 DAVYIILPNSLHAEFAIRAFKAGK--HVMCEKPMATSVADCQRMIDAAKAANKKLM-IGY 208
Query: 136 EYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVND----WN-RFNENTGGTLVE 190
              Y P     +++++   +G++ MV         ++  ND    W  R     GG+L++
Sbjct: 209 RCHYDPMNRAAVKLIRENQLGKLGMVTTDNSD---VMDQNDPAQQWRLRRELAGGGSLMD 265
Query: 191 KCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMY 225
              +  +  R  +G  P+ V A    D N  DE +
Sbjct: 266 IGIYGLNGTRYLLGEEPIEVRAYTYSDPN--DERF 298

>pdb|3E18|A Chain A, Crystal Structure Of Nad-Binding Protein From Listeria Innocua Length = 359

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 107/243 (44%), Gaps = 25/243 (10%)
Query: 11  IIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELL 70
           I+G G MG  H + L    +  + V  + D   + R+ A +        LK++  ++ +L
Sbjct: 10  IVGYGGMGSYH-VTLAS-AADNLEVHGVFDILAEKREAAAQKG------LKIYESYEAVL 61
Query: 71  DSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDIL 130
                D V+++TPN +H ++ +  +   K  HV+ EKP+  T  D   ++D A KR +  
Sbjct: 62  ADEKVDAVLIATPNDSHKELAISALEAGK--HVVCEKPVTMTSEDLLAIMDVA-KRVNKH 118
Query: 131 VQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENTGGTLVE 190
             V    R+      + ++ +  +IG++  +  R H    +    DW     + GG +++
Sbjct: 119 FMVHQNRRWDEDFLIIKEMFEQKTIGEMFHLESRVHGANGI--PGDWRHLKAHGGGMVLD 176
Query: 191 KCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYV-IVEFENGSRGM 249
              H  D +   V SN   V A+ +  +            D +D+ +V  + FENG    
Sbjct: 177 WGVHLLDQLLFLVDSNVKSVSANLSFALG-----------DEVDDGFVTFITFENGITAQ 225
Query: 250 LDL 252
           +++
Sbjct: 226 IEV 228

>pdb|3M2T|A Chain A, The Crystal Structure Of Dehydrogenase From Chromobacterium Violaceum Length = 359

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 93/211 (44%), Gaps = 19/211 (9%)
Query: 7   VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGH 66
           +K G++G+G   +E+ +    L+ Q + +V   D  L+  ++  +  +  D P  V    
Sbjct: 6   IKVGLVGIGAQXQENLLP-SLLQXQDIRIVAACDSDLERARRVHRFIS--DIP--VLDNV 60
Query: 67  QELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKR 126
              L+    D VV + P   H++    ++   K  +V VEKP C T+ + + ++DAAR R
Sbjct: 61  PAXLNQVPLDAVVXAGPPQLHFE--XGLLAXSKGVNVFVEKPPCATLEELETLIDAAR-R 117
Query: 127 PDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREH----RFPFLVKVNDWNRFNE 182
            D++  VG  +++  PV +L +  +    G+   + +  +    R P       W   + 
Sbjct: 118 SDVVSGVGXNFKFARPVRQLREXTQVDEFGETLHIQLNHYANKPRAPL------WG-LDS 170
Query: 183 NTGGTLVEKCCHFFDLMRLFVGSNPMRVMAS 213
                L+ +  H  DL   F      RV +S
Sbjct: 171 TLRSFLLAQAIHTIDLAITFGDGELRRVQSS 201

>pdb|1RYD|A Chain A, Crystal Structure Of Glucose-Fructose Oxidoreductase From Zymomonas Mobilis Length = 387

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 11/149 (7%)
Query: 76  DVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGL 135
           D V +  PN  H +  +      K  HV+ EKP+ T+VADC++++DAA+     L+ +G 
Sbjct: 106 DAVYIILPNSLHAEFAIRAFKAGK--HVMCEKPMATSVADCQRMIDAAKAANKKLM-IGY 162
Query: 136 EYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVND----WN-RFNENTGGTLVE 190
              Y P     +++++   +G++ MV         ++  ND    W  R     GG+L++
Sbjct: 163 RCHYDPMNRAAVKLIRENQLGKLGMVTTDNSD---VMDQNDPAQQWRLRRELAGGGSLMD 219
Query: 191 KCCHFFDLMRLFVGSNPMRVMASGAVDVN 219
              +  +  R  +G  P+ V A    D N
Sbjct: 220 IGIYGLNGTRYLLGEEPIEVRAYTYSDPN 248

>pdb|1OFG|A Chain A, Glucose-Fructose Oxidoreductase Length = 381

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 11/149 (7%)
Query: 76  DVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGL 135
           D V +  PN  H +  +      K  HV+ EKP+ T+VADC++++DAA+     L+ +G 
Sbjct: 100 DAVYIILPNSLHAEFAIRAFKAGK--HVMCEKPMATSVADCQRMIDAAKAANKKLM-IGY 156
Query: 136 EYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVND----WN-RFNENTGGTLVE 190
              Y P     +++++   +G++ MV         ++  ND    W  R     GG+L++
Sbjct: 157 RCHYDPMNRAAVKLIRENQLGKLGMVTTDNSD---VMDQNDPAQQWRLRRELAGGGSLMD 213
Query: 191 KCCHFFDLMRLFVGSNPMRVMASGAVDVN 219
              +  +  R  +G  P+ V A    D N
Sbjct: 214 IGIYGLNGTRYLLGEEPIEVRAYTYSDPN 242

>pdb|2GLX|A Chain A, Crystal Structure Analysis Of Bacterial 1,5-Af Reductase Length = 332

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 101/240 (42%), Gaps = 21/240 (8%)
Query: 8   KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQ 67
           ++G+IG   + RE  I    +R+ G  VV +     + R  A    N      K     +
Sbjct: 2   RWGLIGASTIAREWVIGA--IRATGGEVVSMMSTSAE-RGAAYATENGIG---KSVTSVE 55
Query: 68  ELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRP 127
           EL+     D V VST N  H +  +  I   K  HVL EKPL  T+ D +++V AAR+  
Sbjct: 56  ELVGDPDVDAVYVSTTNELHREQTLAAIRAGK--HVLCEKPLAMTLEDAREMVVAARE-A 112
Query: 128 DILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFL-VKVNDWN-RFNENTG 185
            +++      R       +   +  G IG  + +A R     +L   +  W     E  G
Sbjct: 113 GVVLGTNHHLRNAAAHRAMRDAIAEGRIG--RPIAARVFHAVYLPPHLQGWRLERPEAGG 170
Query: 186 GTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENG 245
           G +++   H  D +R  +  +P       AV ++H   M  GK   + D    ++ F++G
Sbjct: 171 GVILDITVHDADTLRFVLNDDPAE-----AVAISHSAGM--GK-EGVEDGVMGVLRFQSG 222

>pdb|3MOI|A Chain A, The Crystal Structure Of The Putative Dehydrogenase From Bordetella Bronchiseptica Rb50 Length = 387

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 116/263 (44%), Gaps = 18/263 (6%)
Query: 7   VKYGIIGMGMMGREHFINL--HHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP 64
           +++GI G+G  G         HH  +Q   +V   DP+   R++  K     ++ + VF 
Sbjct: 3   IRFGICGLGFAGSVLMAPAMRHHPDAQ---IVAACDPNEDVRERFGK-----EYGIPVFA 54
Query: 65  GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAAR 124
              E++     D V +++P+  H + ++      +  H++VEKPL  +  +  ++++A  
Sbjct: 55  TLAEMMQHVQMDAVYIASPHQFHCEHVVQASE--QGLHIIVEKPLTLSRDEADRMIEAV- 111
Query: 125 KRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENT 184
           +R  + + VG    + P V  L  IV+ GS+G+V M+    +   FL +       + + 
Sbjct: 112 ERAGVHLVVGTSRSHDPVVRTLRAIVQEGSVGRVSMLNCFNY-TDFLYRPRRPEELDTSK 170
Query: 185 GGTLV-EKCCHFFDLMRLFVGSNPMRVMA-SGAVDVNHKDEMYNGKVPDIIDNAYVIVEF 242
           GG ++  +  H  D ++   G     V A +G +D     E     +  + D A  ++ +
Sbjct: 171 GGGIIYNQLPHQIDSIKTITGQRITAVRAMTGRLDPKRPTEGNCAAMLTLEDGACAVMVY 230
Query: 243 ENGSRGMLDLCMF--AEGSKNEQ 263
                   D   F  AEG + +Q
Sbjct: 231 SGYDHFDSDEMHFWLAEGGRAKQ 253

>pdb|3GDO|A Chain A, Crystal Structure Of Putative Oxidoreductase Yvaa From Bacillus Subtilis Length = 358

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 86/374 (22%), Positives = 161/374 (43%), Gaps = 44/374 (11%)
Query: 5   DTVKYGIIGMGMMGRE-HFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LKV 62
           DT+K GI+G G+ G   H   L  L    +S +      + SR + +K     D+P  +V
Sbjct: 4   DTIKVGILGYGLSGSVFHGPLLDVLDEYQISKI------MTSRTEEVKR----DFPDAEV 53
Query: 63  FPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDA 122
               +E+ +    ++V+V+TP+  HY+  M  I   K  HV++EKP+  T  + + +  A
Sbjct: 54  VHELEEITNDPAIELVIVTTPSGLHYEHTMACIQAGK--HVVMEKPMTATAEEGETLKRA 111
Query: 123 ARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNE 182
           A ++  +L+ V    R+      + +++  GS+  +    +  +R+   V+   W     
Sbjct: 112 ADEK-GVLLSVYHNRRWDNDFLTIKKLISEGSLEDINTYQVSYNRYRPEVQAR-WREKEG 169
Query: 183 NTGGTLVEKCCHFFD-LMRLF-----VGSNPMRVMASG-AVDVNHKDEMYNGKVPDIIDN 235
              GTL +   H  D  + LF     V +N M    +   VD  H    Y GK+  I+  
Sbjct: 170 TATGTLYDLGSHIIDQTLHLFGMPKAVTANVMAQRENAETVDYFHLTLDY-GKLQAILYG 228
Query: 236 AYVIVEFENGSRGML---DLCMFAEGSKNEQEIVVVGNTGKGEAF---VPESIVRFATRE 289
             ++    NG R  +   D      G   +++ +  G   + +++   VPE   +  T  
Sbjct: 229 GSIVP--ANGPRYQIHGKDSSFIKYGIDGQEDALRAGRKPEDDSWGADVPEFYGKLTTIR 286
Query: 290 AGREDVQTLKAEDDRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGV 349
              +  +T+ + +            SYL +   ++    +GA +P V  ++G+  + I  
Sbjct: 287 GSDKKTETIPSVN-----------GSYLTYYRKIAESIREGAALP-VTAEEGINVIRIIE 334
Query: 350 AAQLSIEKGRFIAI 363
           AA  S ++ R I +
Sbjct: 335 AAMESSKEKRTIML 348

>pdb|3GFG|A Chain A, Structure Of Putative Oxidoreductase Yvaa From Bacillus Subtilis In Triclinic Form Length = 367

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 86/374 (22%), Positives = 161/374 (43%), Gaps = 44/374 (11%)
Query: 5   DTVKYGIIGMGMMGRE-HFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LKV 62
           DT+K GI+G G+ G   H   L  L    +S +      + SR + +K     D+P  +V
Sbjct: 13  DTIKVGILGYGLSGSVFHGPLLDVLDEYQISKI------MTSRTEEVKR----DFPDAEV 62
Query: 63  FPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDA 122
               +E+ +    ++V+V+TP+  HY+  M  I   K  HV++EKP+  T  + + +  A
Sbjct: 63  VHELEEITNDPAIELVIVTTPSGLHYEHTMACIQAGK--HVVMEKPMTATAEEGETLKRA 120
Query: 123 ARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNE 182
           A ++  +L+ V    R+      + +++  GS+  +    +  +R+   V+   W     
Sbjct: 121 ADEK-GVLLSVYHNRRWDNDFLTIKKLISEGSLEDINTYQVSYNRYRPEVQAR-WREKEG 178
Query: 183 NTGGTLVEKCCHFFD-LMRLF-----VGSNPMRVMASG-AVDVNHKDEMYNGKVPDIIDN 235
              GTL +   H  D  + LF     V +N M    +   VD  H    Y GK+  I+  
Sbjct: 179 TATGTLYDLGSHIIDQTLHLFGMPKAVTANVMAQRENAETVDYFHLTLDY-GKLQAILYG 237
Query: 236 AYVIVEFENGSRGML---DLCMFAEGSKNEQEIVVVGNTGKGEAF---VPESIVRFATRE 289
             ++    NG R  +   D      G   +++ +  G   + +++   VPE   +  T  
Sbjct: 238 GSIVP--ANGPRYQIHGKDSSFIKYGIDGQEDALRAGRKPEDDSWGADVPEFYGKLTTIR 295
Query: 290 AGREDVQTLKAEDDRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGV 349
              +  +T+ + +            SYL +   ++    +GA +P V  ++G+  + I  
Sbjct: 296 GSDKKTETIPSVN-----------GSYLTYYRKIAESIREGAALP-VTAEEGINVIRIIE 343
Query: 350 AAQLSIEKGRFIAI 363
           AA  S ++ R I +
Sbjct: 344 AAMESSKEKRTIML 357

>pdb|4H3V|A Chain A, Crystal Structure Of Oxidoreductase Domain Protein From Kribbella Flavida Length = 390

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 99/229 (43%), Gaps = 30/229 (13%)
Query: 67  QELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKR 126
           + LL+     +V V TP  +H +I +  +   K  HVL EKPL  TVA+ +    AA K 
Sbjct: 68  RTLLERDDVQLVDVCTPGDSHAEIAIAALEAGK--HVLCEKPLANTVAEAEAXAAAAAKA 125
Query: 127 P--DILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMV-------AIREHRFPFLVKVNDW 177
               I   VG  YR +P +A   ++V  G IG V+ V        I +   P   +++  
Sbjct: 126 AAGGIRSXVGFTYRRVPAIALARKLVADGKIGTVRHVRAQYLQDWIADPEAPLSWRLDK- 184
Query: 178 NRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDV----NHKDEMYNG------ 227
              ++   G L +   H  DL +   G     V  SG ++       K E ++G      
Sbjct: 185 ---DKAGSGALGDIGAHIVDLTQFITGDRIAEV--SGRLETFVKERPKPEAHSGLSGTAS 239
Query: 228 --KVPDIIDNAYV-IVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGK 273
             + P  +D+A V +  F  G+ G+ +   FA G KN   I + G+ G 
Sbjct: 240 AERGPVTVDDAAVFLATFRGGALGVFEATRFATGRKNAIRIEINGSKGS 288

>pdb|3V2U|A Chain A, Crystal Structure Of The Yeast Gal Regulon Complex Of The Repressor, Gal80p, And The Transducer, Gal3p, With Galactose And Atp Length = 438

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 79/168 (47%), Gaps = 18/168 (10%)
Query: 7   VKYGIIGM----GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQ---QALKLANAFDWP 59
           ++ G +G+    G   + H+  +  L SQ   +  +  P +++     Q LKL+NA    
Sbjct: 21  IRVGFVGLNAAKGWAIKTHYPAILQLSSQ-FQITALYSPKIETSIATIQRLKLSNA---- 75
Query: 60  LKVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDII----NHPKPHHVLVEKPLCTTVAD 115
              FP  +    S   D++V++    +HY+++M ++    N+P   ++ VE  L  ++  
Sbjct: 76  -TAFPTLESFASSSTIDMIVIAIQVASHYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQ 134
Query: 116 CKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAI 163
            + +  AA +R  +   + L+ R  P + +  +++  G IG +  + I
Sbjct: 135 AESIYKAAAER-GVQTIISLQGRKSPYILRAKELISQGYIGDINSIEI 181

>pdb|3BTS|A Chain A, Crystal Structure Of A Ternary Complex Of The Transcriptional Repressor Gal80p (Gal80s0 [g301r]) And The Acidic Activation Domain Of Gal4p (Aa 854-874) From Saccharomyces Cerevisiae With Nad Length = 438

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 79/168 (47%), Gaps = 18/168 (10%)
Query: 7   VKYGIIGM----GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQ---QALKLANAFDWP 59
           ++ G +G+    G   + H+  +  L SQ   +  +  P +++     Q LKL+NA    
Sbjct: 21  IRVGFVGLNAAKGWAIKTHYPAILQLSSQ-FQITALYSPKIETSIATIQRLKLSNA---- 75
Query: 60  LKVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDII----NHPKPHHVLVEKPLCTTVAD 115
              FP  +    S   D++V++    +HY+++M ++    N+P   ++ VE  L  ++  
Sbjct: 76  -TAFPTLESFASSSTIDMIVIAIQVASHYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQ 134
Query: 116 CKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAI 163
            + +  AA +R  +   + L+ R  P + +  +++  G IG +  + I
Sbjct: 135 AESIYKAAAER-GVQTIISLQGRKSPYILRAKELISQGYIGDINSIEI 181

>pdb|3BTU|A Chain A, Crystal Structure Of The Super-Repressor Mutant Of Gal80p From Saccharomyces Cerevisiae; Gal80(S2) [e351k] Length = 438

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 79/168 (47%), Gaps = 18/168 (10%)
Query: 7   VKYGIIGM----GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQ---QALKLANAFDWP 59
           ++ G +G+    G   + H+  +  L SQ   +  +  P +++     Q LKL+NA    
Sbjct: 21  IRVGFVGLNAAKGWAIKTHYPAILQLSSQ-FQITALYSPKIETSIATIQRLKLSNA---- 75
Query: 60  LKVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDII----NHPKPHHVLVEKPLCTTVAD 115
              FP  +    S   D++V++    +HY+++M ++    N+P   ++ VE  L  ++  
Sbjct: 76  -TAFPTLESFASSSTIDMIVIAIQVASHYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQ 134
Query: 116 CKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAI 163
            + +  AA +R  +   + L+ R  P + +  +++  G IG +  + I
Sbjct: 135 AESIYKAAAER-GVQTIISLQGRKSPYILRAKELISQGYIGDINSIEI 181

>pdb|3DTY|A Chain A, Crystal Structure Of An Oxidoreductase From Pseudomonas Syringae Length = 398

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 92/225 (40%), Gaps = 30/225 (13%)
Query: 67  QELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKR 126
           QE   +     V ++TPN THY I    +      HV+ EKPLC TV   + + + + K 
Sbjct: 78  QEARRADGIQAVSIATPNGTHYSITKAALE--AGLHVVCEKPLCFTVEQAENLRELSHKH 135
Query: 127 PDILVQVGLEYRYMPP--VAKLIQIVKSGSIGQVKMV----AIREHRFPFLV--KVNDWN 178
             I   VG+ Y Y     + +  + + +G +G V+ V    A   H  P     +   W 
Sbjct: 136 NRI---VGVTYGYAGHQLIEQAREXIAAGELGDVRXVHXQFAHGFHSAPVEAQSQATQWR 192
Query: 179 RFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVN------HKDEMYNGKVPDI 232
                 G + V       D     VG++P+ +      D+        +      + P +
Sbjct: 193 VDPRQAGPSYV-----LGD-----VGTHPLYLSEVXLPDLKIKRLXCSRQSFVASRAP-L 241
Query: 233 IDNAYVIVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAF 277
            DNAY + E+E G+ G +       GS + Q+I V+G+    E +
Sbjct: 242 EDNAYTLXEYEGGAXGXVWSSAVNAGSXHGQKIRVIGSRASLEWW 286

>pdb|4HKT|A Chain A, Crystal Structure Of A Putative Myo-Inositol Dehydrogenase From Sinorhizobium Meliloti 1021 (Target Psi-012312) Length = 331

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 61/142 (42%), Gaps = 14/142 (9%)
Query: 78  VVVSTPNMTHYQILMDIINHPKPHHVLVEKPL---CTTVADCKKVVDAARKRPDILVQVG 134
           VV+ TP  TH  ++       K   +  EKP+      V  C KVV   + +    + VG
Sbjct: 67  VVICTPTDTHADLIERFARAGKA--IFCEKPIDLDAERVRACLKVVSDTKAK----LXVG 120
Query: 135 LEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENTGGTLVEKCCH 194
              R+ P    + + +  G IG+V+ V I   R P    V+   R    +GG   +   H
Sbjct: 121 FNRRFDPHFXAVRKAIDDGRIGEVEXVTI-TSRDPSAPPVDYIKR----SGGIFRDXTIH 175
Query: 195 FFDLMRLFVGSNPMRVMASGAV 216
            FD  R  +G  P+ V A+ AV
Sbjct: 176 DFDXARFLLGEEPVSVTATAAV 197

>pdb|3FHL|A Chain A, Crystal Structure Of A Putative Oxidoreductase From Bacteroides Fragilis Nctc 9343 Length = 362

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 3/131 (2%)
Query: 67  QELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKR 126
           +EL +    D++VV+TP+ THY+     +   K  +V+VEKP  +T    ++++  A+K+
Sbjct: 58  KELTEDPEIDLIVVNTPDNTHYEYAGMALEAGK--NVVVEKPFTSTTKQGEELIALAKKK 115
Query: 127 PDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENTGG 186
             +++ V    R+      +  I+    +G++        R+   +K N W    E+ GG
Sbjct: 116 -GLMLSVYQNRRWDADFLTVRDILAKSLLGRLVEYESTFARYRNFIKPNTWKETGESGGG 174
Query: 187 TLVEKCCHFFD 197
                  H  D
Sbjct: 175 LTYNLGSHLID 185

>pdb|3EVN|A Chain A, Crystal Structure Of Putative Oxidoreductase From Streptococcus Agalactiae 2603vR Length = 329

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 11/182 (6%)
Query: 7   VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGH 66
           V+YG++    +    FI    L   G  VV ++   L+S Q     AN +  P K +   
Sbjct: 6   VRYGVVSTAKVA-PRFIEGVRLAGNG-EVVAVSSRTLESAQ---AFANKYHLP-KAYDKL 59
Query: 67  QELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKR 126
           +++L     DV+ V+T N  HY++    +   K  HVLVEKP   T     ++  A  + 
Sbjct: 60  EDMLADESIDVIYVATINQDHYKVAKAALLAGK--HVLVEKPFTLTYDQANELF-ALAES 116
Query: 127 PDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENTGG 186
            ++ +    +  ++P    + +++ SG IG+V  ++     +P +  V  W R  E  GG
Sbjct: 117 CNLFLMEAQKSVFIPMTQVIKKLLASGEIGEVISIS-STTAYPNIDHVT-WFRELELGGG 174
Query: 187 TL 188
           T+
Sbjct: 175 TV 176

>pdb|3E82|A Chain A, Crystal Structure Of A Putative Oxidoreductase From Klebsiella Pneumoniae Length = 364

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 92/202 (45%), Gaps = 15/202 (7%)
Query: 3   ANDTVKYGIIGMGMMGREHFINLHHLRS-QGVSVVCIADPHLQSRQQALKLANAFDWPLK 61
           +N+T+   +IG G +G+     L  +RS  G+++  +A     SR +     +  D  + 
Sbjct: 4   SNNTINIALIGYGFVGKTFHAPL--IRSVPGLNLAFVA-----SRDEEKVKRDLPD--VT 54
Query: 62  VFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVD 121
           V    +  +     D+VV+++PN TH  +    +N  K  HV+V+KP      + ++++ 
Sbjct: 55  VIASPEAAVQHPDVDLVVIASPNATHAPLARLALNAGK--HVVVDKPFTLDXQEARELIA 112
Query: 122 AARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFN 181
            A ++  +L  V    R+      + Q+++ G++G VK       RF   V+V  W   N
Sbjct: 113 LAEEKQRLL-SVFHNRRWDSDYLGIRQVIEQGTLGAVKHFESHFDRFRPEVRVR-WREQN 170
Query: 182 ENTGGTLVEKCCHFFD-LMRLF 202
               G   +   H  D  ++LF
Sbjct: 171 VPGSGLWFDLGPHLIDQALQLF 192

>pdb|3UUW|A Chain A, 1.63 Angstrom Resolution Crystal Structure Of Dehydrogenase (Mvim) From Clostridium Difficile. Length = 308

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 71/139 (51%), Gaps = 11/139 (7%)
Query: 3   ANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKV 62
           A   +K G+IG+G + ++ ++ +   +S+    V    P+   R++        D+ +  
Sbjct: 3   AMKNIKMGMIGLGSIAQKAYLPIL-TKSERFEFVGAFTPNKVKREKICS-----DYRIMP 56
Query: 63  FPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDA 122
           F   + L     CD + + +   THY+I+  ++N     HV V+KPL +TV+  +++++ 
Sbjct: 57  FDSIESLAKK--CDCIFLHSSTETHYEIIKILLNLGV--HVYVDKPLASTVSQGEELIEL 112
Query: 123 ARKRPDILVQVGLEYRYMP 141
           + K+ ++ + VG   R+ P
Sbjct: 113 STKK-NLNLMVGFNRRFCP 130

>pdb|3KUX|A Chain A, Structure Of The Ypo2259 Putative Oxidoreductase From Yersinia Pestis Length = 352

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 15/203 (7%)
Query: 2   AANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-L 60
           A  D +K G++G G   +      H     G   + +A     S   A K+    DWP +
Sbjct: 3   AXADKIKVGLLGYGYASK----TFHAPLIXGTPGLELAG---VSSSDASKVHA--DWPAI 53
Query: 61  KVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVV 120
            V    Q L +    D++V+ TPN TH+ +    +   K  HV+V+KP   T++    + 
Sbjct: 54  PVVSDPQXLFNDPSIDLIVIPTPNDTHFPLAQSALAAGK--HVVVDKPFTVTLSQANALK 111
Query: 121 DAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRF 180
           + A     +L+ V    R+      L  ++  GS+G V        R+   ++   W   
Sbjct: 112 EHADDA-GLLLSVFHNRRWDSDFLTLKTLLAEGSLGNVVYFESHFDRYRPEIR-QRWREQ 169
Query: 181 NENTGGTLVEKCCHFFD-LMRLF 202
               GG   +   H  D  ++LF
Sbjct: 170 AGAGGGIWYDLGPHLLDQALQLF 192

>pdb|3HNP|A Chain A, Crystal Structure Of An Oxidoreductase From Bacillus Cereus. Northeast Structural Genomics Consortium Target Id Bcr251 Length = 353

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 68  ELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRP 127
           ELL+     VV + TP  THY++   +I   K   V+VEKP C TV   K+++   R++ 
Sbjct: 59  ELLNDKEIQVVTICTPAHTHYELAKKVILAGKS--VIVEKPFCDTVEHAKELLALGREK- 115
Query: 128 DILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREH 166
            ++V      R+      + Q+V+ G +G +  + I  H
Sbjct: 116 GVVVMPYQNRRFDGDFLAVKQVVEQGFLGDI--IEIESH 152

>pdb|4FB5|A Chain A, Crystal Structure Of A Probable Oxidoreduxtase Protein Length = 393

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 4/155 (2%)
Query: 10  GIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL-KVFPGHQE 68
           G+IG G  G+ H +  + +++    V      HL      L  A A ++   K     + 
Sbjct: 29  GLIGTGYXGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRA 88
Query: 69  LLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPD 128
           L+     DVV V+TPN  H +  +  +   K  HV  EKP     AD ++ + A  +R  
Sbjct: 89  LIADPEVDVVSVTTPNQFHAEXAIAALEAGK--HVWCEKPXAPAYADAERXL-ATAERSG 145
Query: 129 ILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAI 163
            +  +G  Y   P    + ++V  G IG+V  V +
Sbjct: 146 KVAALGYNYIQNPVXRHIRKLVGDGVIGRVNHVRV 180

>pdb|1TLT|A Chain A, Crystal Structure Of A Putative Oxidoreductase (Virulence Factor Mvim Homolog) Length = 319

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 76/156 (48%), Gaps = 24/156 (15%)
Query: 7   VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQ-----SRQQALKLANAFDWPLK 61
           ++ G++G+G + ++ ++ +         +   +D  LQ     +R +AL +  +  W + 
Sbjct: 6   LRIGVVGLGGIAQKAWLPV---------LAAASDWTLQGAWSPTRAKALPICES--WRIP 54
Query: 62  VFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVD 121
                  L  S  CD V V +   +H+ ++  ++N     HV V+KPL   + D +++V+
Sbjct: 55  YADSLSSLAAS--CDAVFVHSSTASHFDVVSTLLNAGV--HVCVDKPLAENLRDAERLVE 110
Query: 122 -AARKRPDILVQVGLEYRYMPPVAKL-IQIVKSGSI 155
            AARK+  + + VG   R+ P   +L  Q+  + S+
Sbjct: 111 LAARKK--LTLMVGFNRRFAPLYGELKTQLATAASL 144

>pdb|3FD8|A Chain A, Crystal Structure Of An Oxidoreductase From Enterococcus Faecalis Length = 359

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 8/156 (5%)
Query: 6   TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPG 65
           TVK G IG G     + +    +R + + V  I D H+  +  A       ++   +   
Sbjct: 4   TVKXGFIGFGKSANRYHLPYVXIR-ETLEVKTIFDLHVNEKAAAPFKEKGVNFTADL--- 59
Query: 66  HQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARK 125
             ELL     +++ + TP  THY +    I   K   V+VEKP C T+   +++    ++
Sbjct: 60  -NELLTDPEIELITICTPAHTHYDLAKQAILAGK--SVIVEKPFCDTLEHAEELFALGQE 116
Query: 126 RPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMV 161
           +  ++V      R+        Q+V+ G +G++  V
Sbjct: 117 K-GVVVXPYQNRRFDGDYLAXKQVVEQGFLGEINEV 151

>pdb|1YDW|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At4g09670 Length = 362

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 70/161 (43%), Gaps = 7/161 (4%)
Query: 2   AANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLK 61
           A    ++ G+ G   + R+    +H   +   ++  +A   L+ + +A   AN +    K
Sbjct: 2   ATETQIRIGVXGCADIARKVSRAIH--LAPNATISGVASRSLE-KAKAFATANNYPESTK 58
Query: 62  VFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVD 121
           +   ++ LL+    D + V  P   H +  +      K  H+L+EKP+   V +  K+VD
Sbjct: 59  IHGSYESLLEDPEIDALYVPLPTSLHVEWAIKAAEKGK--HILLEKPVAXNVTEFDKIVD 116
Query: 122 AARKRPDILVQVGLEYRYMPPVAKLIQIVK-SGSIGQVKMV 161
           A      + +  G  + + P  A L + +  S   GQ+K V
Sbjct: 117 ACEAN-GVQIXDGTXWVHNPRTALLKEFLSDSERFGQLKTV 156

>pdb|3I23|A Chain A, Crystal Structure Of An Oxidoreductase (GfoIDHMOCA FAMILY) From Enterococcus Faecalis. Northeast Structural Genomics Consortium Target Id Efr167 Length = 349

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 8/156 (5%)
Query: 6   TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPG 65
           TVK G IG G     + +    +R + + V  I D H+  +  A       ++   +   
Sbjct: 2   TVKXGFIGFGKSANRYHLPYVXIR-ETLEVKTIFDLHVNEKAAAPFKEKGVNFTADL--- 57
Query: 66  HQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARK 125
             ELL     +++ + TP  THY +    I   K   V+VEKP C T+   +++    ++
Sbjct: 58  -NELLTDPEIELITICTPAHTHYDLAKQAILAGK--SVIVEKPFCDTLEHAEELFALGQE 114
Query: 126 RPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMV 161
           +  ++V      R+        Q+V+ G +G++  V
Sbjct: 115 K-GVVVXPYQNRRFDGDYLAXKQVVEQGFLGEINEV 149

>pdb|3OQB|A Chain A, Crystal Structure Of Putative Oxidoreductase From Bradyrhizobium Japonicum Usda 110 Length = 383

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 108/269 (40%), Gaps = 45/269 (16%)
Query: 6   TVKYGIIGMGMMGREHFINLHHLRS-------QGVSVV----CIADPHL--QSRQQALKL 52
           T + G+I  G+ GR   +N H +RS        GV +        DP L  +S ++   L
Sbjct: 4   TQRLGLIXNGVTGRXG-LNQHLIRSIVAIRDQGGVRLKNGDRIXPDPILVGRSAEKVEAL 62
Query: 53  ANAFD---WPLKVFPGHQELLDSGLCDVVVV-STPNMTHYQILMDIINHPKPHHVLVEKP 108
           A  F+   W   +     +  D+   D     + P +     L   IN  K  HV  EKP
Sbjct: 63  AKRFNIARWTTDLDAALADKNDTXFFDAATTQARPGL-----LTQAINAGK--HVYCEKP 115
Query: 109 LCTTVADCKKVVDAARKR--PDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREH 166
           + T   +  +VV  A  +      VQ  L   ++P + K+  +  SG  G++  V     
Sbjct: 116 IATNFEEALEVVKLANSKGVKHGTVQDKL---FLPGLKKIAFLRDSGFFGRILSV---RG 169
Query: 167 RFPFLV--------KVNDWNRFNENTGGTLVEKCCHF-FDLMRLFVGSNPMRVMASGAVD 217
            F + V        +   WN  +E+ GG +++  CH+ + L  LF   N   V+  G  D
Sbjct: 170 EFGYWVFEGGWQEAQRPSWNYRDEDGGGIILDXVCHWRYVLDNLF--GNVQSVVCIGNTD 227
Query: 218 VNHK-DEMYNGKVPDIIDNAYVIVEFENG 245
           +  + DE          D+AY   + E G
Sbjct: 228 IPERFDEQGKKYKATADDSAYATFQLEGG 256

>pdb|3E9M|A Chain A, Crystal Structure Of An Oxidoreductase From Enterococcus Faecalis Length = 330

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/222 (20%), Positives = 86/222 (38%), Gaps = 11/222 (4%)
Query: 5   DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP 64
           D ++YGI     +       L    S    V  IA   L++ Q   K A     P+  + 
Sbjct: 4   DKIRYGIXSTAQIVPRFVAGLRE--SAQAEVRGIASRRLENAQ---KXAKELAIPV-AYG 57
Query: 65  GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAAR 124
            ++EL      D++ + T N  HY      ++  KP  VL+EKP     A+ +++   A+
Sbjct: 58  SYEELCKDETIDIIYIPTYNQGHYSAAKLALSQGKP--VLLEKPFTLNAAEAEELFAIAQ 115
Query: 125 KRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENT 184
           ++  + +    +  ++P   K+   ++ G +G++  V      +P +  +  W    E  
Sbjct: 116 EQ-GVFLXEAQKSVFLPITQKVKATIQEGGLGEILWVQ-SVTAYPNVDHI-PWFYSREAG 172
Query: 185 GGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYN 226
           GG L     +    ++  +G     V  +        D   N
Sbjct: 173 GGALHGSGSYPLQYLQYVLGKEIQEVTGTATYQQGATDSQCN 214

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	376
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	3e-62
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	3e-61
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	4e-61
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	1e-59
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	1e-58
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	3e-58
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	2e-57
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	2e-57
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	1e-56
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	2e-55
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	1e-54
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	1e-53
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	3e-52
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	3e-51
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	3e-51
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	6e-51
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	2e-50
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	4e-47
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	1e-46
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	7e-45
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	2e-44
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	3e-44
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	4e-44
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	6e-44
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	1e-43
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	2e-43
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	6e-43
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	9e-43
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	1e-41
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	1e-39
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	1e-36
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	1e-35
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	2e-33
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	1e-32
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	8e-32
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	1e-31
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	1e-30
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	1e-29
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	3e-28
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	6e-28
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	4e-27
1ydw_A	362	AX110P-like protein; structural genomics, protein	4e-24
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	1e-19
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	3e-09

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} Length = 346

 Score =  202 bits (515), Expect = 3e-62
 Identities = 66/366 (18%), Positives = 136/366 (37%), Gaps = 25/366 (6%)

Query: 1   MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL 60
           +     ++  IIG+G +G  H  +L + + QGV +V                 N      
Sbjct: 3   VTTRKPLRAAIIGLGRLGERHARHLVN-KIQGVKLVAACALDSNQ---LEWAKNELGVE- 57

Query: 61  KVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVV 120
             +  +++++D+   D + +  P   H ++ +  +N     +V  EKPL     +  ++ 
Sbjct: 58  TTYTNYKDMIDTENIDAIFIVAPTPFHPEMTIYAMNAGL--NVFCEKPLGLDFNEVDEMA 115

Query: 121 DAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRF 180
              +  P+ + Q G   RY        +IV +G IG++  +       P     +     
Sbjct: 116 KVIKSHPNQIFQSGFMRRYDDSYRYAKKIVDNGDIGKIIYMRGY-GIDPISGMESFTKFA 174

Query: 181 NENT-GGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVI 239
            E   GG  V+   H  DL+R F G +P++     +     +            +     
Sbjct: 175 TEADSGGIFVDMNIHDIDLIRWFTGQDPVQAYGLTSNIAAPQLADIG-----EFETGVAQ 229

Query: 240 VEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLK 299
           ++  +G    L     A    N+ E+ V+G+   G   + E            + V    
Sbjct: 230 LKMSDGVIATLIGGRHA-AHGNQVELEVMGS--NGWVRIGEHPDLNRVTVFNDQGVVRPS 286

Query: 300 AEDDRIEYEGLHHGSSYLEHLN-FLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKG 358
            +     ++     +++ + +  F++ +     K P V + DG+ ++ I  A Q S   G
Sbjct: 287 LQSFGERFD-----TAFTDEVQDFVNNVIVG--KQPEVTVDDGIKALKIAKACQQSANIG 339

Query: 359 RFIAIE 364
           + + I+
Sbjct: 340 KLVDIQ 345

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* Length = 344

 Score =  199 bits (508), Expect = 3e-61
 Identities = 79/362 (21%), Positives = 142/362 (39%), Gaps = 34/362 (9%)

Query: 6   TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPG 65
           +++ G+IG G +G+EH   + + +  G  +V + D +   ++ A K+   +     V+P 
Sbjct: 2   SLRIGVIGTGAIGKEHINRITN-KLSGAEIVAVTDVN---QEAAQKVVEQYQLNATVYPN 57

Query: 66  HQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARK 125
              LL     D V+V++    H   ++  I   K  +V  EKPL TT   C ++V+   K
Sbjct: 58  DDSLLADENVDAVLVTSWGPAHESSVLKAIKAQK--YVFCEKPLATTAEGCMRIVEEEIK 115

Query: 126 RPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENTG 185
               LVQVG   RY     +L + + +  IG+  M+    HR P           N  T 
Sbjct: 116 VGKRLVQVGFMRRYDSGYVQLKEALDNHVIGEPLMIHCA-HRNP-------TVGDNYTTD 167

Query: 186 GTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENG 245
             +V+   H  D++   V  +   V         +        +P + D   V++E + G
Sbjct: 168 MAVVDTLVHEIDVLHWLVNDDYESVQVIYPKKSKN-------ALPHLKDPQIVVIETKGG 220

Query: 246 SRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAEDDRI 305
                ++ +       + +  +VG  G  +          + R+ GR     L     R 
Sbjct: 221 IVINAEIYVNC-KYGYDIQCEIVGEDGIIKL---PEPSSISLRKEGRFSTDILMDWQRRF 276

Query: 306 EYEGLHHGSSYLEHLN-FLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAIE 364
                   ++Y   +  F+ +I+ KG +V      DG I+     A   + E G+   +E
Sbjct: 277 V-------AAYDVEIQDFIDSIQKKG-EVSGPTAWDGYIAAVTTDACVKAQESGQKEKVE 328

Query: 365 EV 366
             
Sbjct: 329 LK 330

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} Length = 337

 Score =  199 bits (507), Expect = 4e-61
 Identities = 71/364 (19%), Positives = 136/364 (37%), Gaps = 40/364 (10%)

Query: 6   TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPG 65
           ++K  +IG     R     L    S       + +       +  K  +  +   K +  
Sbjct: 2   SLKICVIGSSGHFRYALEGLDEECSITGIAPGVPEE---DLSKLEKAISEMNIKPKKYNN 58

Query: 66  HQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARK 125
             E+L+    D++V++T    + +IL++ +      H  VEKP+ TT  D +K+    +K
Sbjct: 59  WWEMLEKEKPDILVINTVFSLNGKILLEALERKI--HAFVEKPIATTFEDLEKIRSVYQK 116

Query: 126 -RPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMV-AIREHRFPFLVKVNDWNRFNEN 183
            R ++        RY P      ++V  G++G++++V   + ++     +  D+ +  E 
Sbjct: 117 VRNEVFFTAMFGIRYRPHFLTAKKLVSEGAVGEIRLVNTQKSYKLG---QRPDFYKKRET 173

Query: 184 TGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFE 243
            GGT+     H  D +    G   + V A+ +   N           ++   A      E
Sbjct: 174 YGGTIPWVGIHAIDWIHWITGKKFLSVYATHSRLHNS-------GHGELETTALCHFTLE 226

Query: 244 NGSRGMLDLCMFAE---GSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKA 300
           N     L +         + ++  + +VG   +G   V    V     +  RE       
Sbjct: 227 NEVFASLSIDYLRPQGAPTHDDDRMRIVGT--RGIVEVINERVFLTDEKGHRE------- 277

Query: 301 EDDRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRF 360
                    L       E   FL  IR +G     V  +D +++  I + A+LS + G+ 
Sbjct: 278 -------VPLVEKGQIFED--FLREIRGQGK--CMVTPEDSILTTEIALKARLSADTGQI 326

Query: 361 IAIE 364
           + IE
Sbjct: 327 VLIE 330

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} Length = 344

 Score =  195 bits (498), Expect = 1e-59
 Identities = 92/366 (25%), Positives = 170/366 (46%), Gaps = 32/366 (8%)

Query: 6   TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPG 65
           +++ G+IG+G +G  H  NL         +  I+D       +  ++        K +  
Sbjct: 2   SLRIGVIGLGRIGTIHAENLK--MIDDAILYAISDV---REDRLREMKEKLGVE-KAYKD 55

Query: 66  HQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARK 125
             EL++    D V+V +   TH ++++      K  HV  EKPL   +AD  ++++   K
Sbjct: 56  PHELIEDPNVDAVLVCSSTNTHSELVIACAKAKK--HVFCEKPLSLNLADVDRMIEET-K 112

Query: 126 RPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENTG 185
           + D+++  G   R+     KL + V++G+IG+  ++ I   R P          +   +G
Sbjct: 113 KADVILFTGFNRRFDRNFKKLKEAVENGTIGKPHVLRIT-SRDPAPP----PLDYIRVSG 167

Query: 186 GTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENG 245
           G  ++   H FD+ R  +G     V A G+V V+ +           +D A V++ F++G
Sbjct: 168 GIFLDMTIHDFDMARYIMGEEVEEVFADGSVLVDEE-----IGKAGDVDTAVVVLRFKSG 222

Query: 246 SRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAF-VPESIVRFATREAGREDVQTLKAEDDR 304
           + G++D    A     +Q I V G+ G+  A  V E+ V     +  R      +     
Sbjct: 223 ALGVIDNSRRA-VYGYDQRIEVFGSKGRIFADNVRETTVVLTDEQGDRGS----RYLYFF 277

Query: 305 IEYEGLHHGSSYLEHLN-FLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAI 363
           +E     +  SYLE L  F+  +++   + PAV  +DG +++ +G AA+ S+E+ R + +
Sbjct: 278 LE----RYRDSYLEELKTFIKNVKSG--EPPAVSGEDGKMALLLGYAAKKSLEEKRSVKL 331

Query: 364 EEVMEE 369
           EEV+ E
Sbjct: 332 EEVIGE 337

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} Length = 357

 Score =  193 bits (492), Expect = 1e-58
 Identities = 82/367 (22%), Positives = 140/367 (38%), Gaps = 35/367 (9%)

Query: 1   MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL 60
                T+K GI+G+GM+G +H   L +    GV VV + D       +A    + +    
Sbjct: 18  YFQGMTLKAGIVGIGMIGSDHLRRLAN-TVSGVEVVAVCDIVAG---RAQAALDKYAIEA 73

Query: 61  KVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVV 120
           K +  + +L++    +VV+++  N  H  + +  +N  K  +V  EKPL  T ADC++V+
Sbjct: 74  KDYNDYHDLINDKDVEVVIITASNEAHADVAVAALNANK--YVFCEKPLAVTAADCQRVI 131

Query: 121 DAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRF 180
           +A +K    +VQ+G   RY     +L  I+ SG IGQ  MV  R H        +    +
Sbjct: 132 EAEQKNGKRMVQIGFMRRYDKGYVQLKNIIDSGEIGQPLMVHGR-HYNA-----STVPEY 185

Query: 181 NENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIV 240
              T   + E   H  D+M   +  +   V               +  V  + D   V++
Sbjct: 186 --KTPQAIYETLIHEIDVMHWLLNEDYKTVKVYFPR--------QSSLVTTLRDPQLVVM 235

Query: 241 EFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKA 300
           E  +G   ++++ +       +    V G  G  E     ++   A R+A +     L  
Sbjct: 236 ETTSGINIVVEVFVNC-QYGYDIHCDVTGEKGMAEL---PTVASAAVRKAAKYSTDILVD 291

Query: 301 EDDRIEYEGLHHGSSYLEHLN-FLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGR 359
              R          +Y      F   +   G         DG ++     A   S E G 
Sbjct: 292 WKQRFI-------DAYDIEFQDFFDRLN-AGLPPAGPTSWDGYLAAVTADACVKSQETGN 343

Query: 360 FIAIEEV 366
              +E  
Sbjct: 344 TEIVELP 350

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} Length = 344

 Score =  191 bits (488), Expect = 3e-58
 Identities = 69/367 (18%), Positives = 135/367 (36%), Gaps = 33/367 (8%)

Query: 4   NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF 63
           + T++  + G G +G  H  N+    +  + +V IADP ++  Q+  +   A     +  
Sbjct: 2   SLTLRIALFGAGRIGHVHAANIA--ANPDLELVVIADPFIEGAQRLAEANGA-----EAV 54

Query: 64  PGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAA 123
               E+      D +V+ +P  TH  ++   +        L EKP+   +   +   +  
Sbjct: 55  ASPDEVFARDDIDGIVIGSPTSTHVDLITRAVERGI--PALCEKPIDLDIEMVRACKEKI 112

Query: 124 RKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNEN 183
                  V +G   R+ P  A +   V +  IG ++ + I   R P          +   
Sbjct: 113 -GDGASKVMLGFNRRFDPSFAAINARVANQEIGNLEQLVII-SRDPAP----APKDYIAG 166

Query: 184 TGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFE 243
           +GG   +   H  D+ R FV +  + V A+GA   + +         +  D   V +   
Sbjct: 167 SGGIFRDMTIHDLDMARFFVPN-IVEVTATGANVFSQE-----IAEFNDYDQVIVTLRGS 220

Query: 244 NGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEA-FVPESIVRFATREAGREDVQTLKAED 302
            G    +           +Q +   G+ G   A  +  + VR    E+  +         
Sbjct: 221 KGELINIVNSRHC-SYGYDQRLEAFGSKGMLAADNIRPTTVRKHNAESTEQADPIFNFFL 279

Query: 303 DRIEYEGLHHGSSYLEHLN-FLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFI 361
           +R +       ++Y   L  F   IR    +  + + +DG+I++ +  A   S + GR +
Sbjct: 280 ERYD-------AAYKAELATFAQGIRDG--QGFSPNFEDGVIALELANACLESAQTGRTV 330

Query: 362 AIEEVME 368
            +    E
Sbjct: 331 TLNPANE 337

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} Length = 359

 Score =  189 bits (483), Expect = 2e-57
 Identities = 64/372 (17%), Positives = 129/372 (34%), Gaps = 46/372 (12%)

Query: 5   DTVKYGIIGMGMMGREHFINLHHLRS----QGVSVVCIADPHLQSRQQALKLANAFDWPL 60
             +K G++G+G   +E+      L S    Q + +V   D      ++A ++        
Sbjct: 4   SLIKVGLVGIGAQMQEN-----LLPSLLQMQDIRIVAACDS---DLERARRVHRFISDI- 54

Query: 61  KVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVV 120
            V      +L+    D VV++ P   H+++ +  ++     +V VEKP C T+ + + ++
Sbjct: 55  PVLDNVPAMLNQVPLDAVVMAGPPQLHFEMGLLAMSKGV--NVFVEKPPCATLEELETLI 112

Query: 121 DAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMV-AIREHRFPFLVKVNDWNR 179
           DAAR+  D++  VG+ +++  PV +L ++ +    G+   +        P          
Sbjct: 113 DAARRS-DVVSGVGMNFKFARPVRQLREMTQVDEFGETLHIQLNHYANKP----RAPLWG 167

Query: 180 FNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVI 239
            +      L+ +  H  DL   F      RV +S      H D                 
Sbjct: 168 LDSTLRSFLLAQAIHTIDLAITFGDGELRRVQSSVQ---RHDDA----------LIVRAD 214

Query: 240 VEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLK 299
           + F +G+   L         + + ++V    +        +++      E       T  
Sbjct: 215 MAFSSGATASLLAGTSFPYFEFDMKLV----SSSSTLVELDNLWNITLHEPEHATRPTGA 270

Query: 300 AEDDRIEYEGLHHGSSY------LEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQL 353
           A+  R  ++     S Y       E   F  AIR    +    D    L +  +      
Sbjct: 271 AKRWRGAWQPGPLDSGYERSGYHGELHQFFQAIREH--RRFEADFASLLPTYRVIEEICS 328

Query: 354 SIEKGRFIAIEE 365
           +    + +    
Sbjct: 329 ADAVAQGLQNAH 340

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} Length = 332

 Score =  189 bits (481), Expect = 2e-57
 Identities = 79/359 (22%), Positives = 131/359 (36%), Gaps = 33/359 (9%)

Query: 8   KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQ 67
           ++G+IG   + RE  I    +R+ G  VV +      S ++    A       K     +
Sbjct: 2   RWGLIGASTIAREWVIGA--IRATGGEVVSMMST---SAERGAAYATENGIG-KSVTSVE 55

Query: 68  ELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRP 127
           EL+     D V VST N  H +  +  I   K  HVL EKPL  T+ D +++V AAR+  
Sbjct: 56  ELVGDPDVDAVYVSTTNELHREQTLAAIRAGK--HVLCEKPLAMTLEDAREMVVAAREA- 112

Query: 128 DILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENT-GG 186
            +++      R       +   +  G IG+     +  H       +  W        GG
Sbjct: 113 GVVLGTNHHLRNAAAHRAMRDAIAEGRIGRPIAARVF-HAVYLPPHLQGWRLERPEAGGG 171

Query: 187 TLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENGS 246
            +++   H  D +R  +  +P   +A        K+         + D    ++ F++G 
Sbjct: 172 VILDITVHDADTLRFVLNDDPAEAVAISHSAGMGKEG--------VEDGVMGVLRFQSGV 223

Query: 247 RGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAEDDRIE 306
                     +    E    V G  G        S++             TL+  +    
Sbjct: 224 IAQFHDAFTTKF--AETGFEVHGTEG--------SLIGRNVMTQKPVGTVTLRNAEGE-S 272

Query: 307 YEGLHHGSSYLEHLN-FLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAIE 364
              L   + Y   L  F SAI   G   P+   +DG+ S+A G+A   +   G+   IE
Sbjct: 273 QLPLDPANLYETALAAFHSAIEGHGQ--PSATGEDGVWSLATGLAVVKAAATGQAAEIE 329

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} Length = 354

 Score =  187 bits (478), Expect = 1e-56
 Identities = 65/378 (17%), Positives = 137/378 (36%), Gaps = 43/378 (11%)

Query: 5   DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP 64
           + V    IG+G             +S+ + +V        +  +  K    ++       
Sbjct: 4   NPVGVAAIGLGRWAYVMADAYT--KSEKLKLVTCYSR---TEDKREKFGKRYNCA--GDA 56

Query: 65  GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAAR 124
             + LL     ++V+++ PN  H +++       K  H+ VEKP+  ++   +++    +
Sbjct: 57  TMEALLAREDVEMVIITVPNDKHAEVIEQCARSGK--HIYVEKPISVSLDHAQRIDQVIK 114

Query: 125 KRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMV-AIREHRFPFLVKVNDWNRFNEN 183
           +   +    G   R +  + K+ +++ +  IG+V  + A+  +     +K  +W R    
Sbjct: 115 ET-GVKFLCGHSSRRLGALRKMKEMIDTKEIGEVSSIEAVFSNERGLELKKGNW-RGEPA 172

Query: 184 T--GGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVE 241
           T  GG L +   H  D ++  +G    RV   G                + I     ++E
Sbjct: 173 TAPGGPLTQLGVHQIDNLQFLLG-PVARVFNFGKPMYTEV---------ENITVNQTLLE 222

Query: 242 FENGSRGMLDLCMFAEGSKNEQEIVVVGNTG------------KGEAFVPESIVRFATRE 289
           FE+G +  L       G      I V G                 +     S +      
Sbjct: 223 FEDGKQAYLGTNWACPG---VFSINVYGTKANLFYQLDFSWWSNSDVTDEHSTLIKREFA 279

Query: 290 AGREDVQTLKAEDDRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGV 349
           +  +D       D ++++E + H    +E       IR        +  +  L ++A+ +
Sbjct: 280 SMSDDPDNRILRDVKVDFESVDHLRVEVEE--VADVIRNG--GETEIGAEASLRNLAVVL 335

Query: 350 AAQLSIEKGRFIAIEEVM 367
           AA  S+ + R + I E++
Sbjct: 336 AAVKSVHEKRPVEIAEII 353

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* Length = 354

 Score =  184 bits (470), Expect = 2e-55
 Identities = 73/368 (19%), Positives = 136/368 (36%), Gaps = 34/368 (9%)

Query: 3   ANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKV 62
            +  +++ ++G G +   HF  L    +    ++ + D                      
Sbjct: 10  TDRKIRFALVGCGRIANNHFGALEKH-ADRAELIDVCDI---DPAALKAAVERTGAR--G 63

Query: 63  FPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDA 122
                ++L     D+V+++TP+  H    ++        HV+ EKP+ T   D  ++V A
Sbjct: 64  HASLTDMLAQTDADIVILTTPSGLHPTQSIECSEAGF--HVMTEKPMATRWEDGLEMVKA 121

Query: 123 ARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMV--AIREHRFPFLVKVNDWNRF 180
           A K     + V  + R    +  L + ++    G++ MV   +   R         W   
Sbjct: 122 ADKA-KKHLFVVKQNRRNATLQLLKRAMQEKRFGRIYMVNVNVFWTRPQEYYDAAGWRGT 180

Query: 181 NENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKD-EMYNGKVPDIIDNAYVI 239
            E  GG  + +  H+ DL+   +G     V A  A    + + E          D   V 
Sbjct: 181 WEFDGGAFMNQASHYVDLLDWLIG-PVESVQAYTATLARNIEVE----------DTGTVS 229

Query: 240 VEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGK----GEAFVPESIVRFATREAGREDV 295
           V++ +G+ G +++ M       E  I ++G  G     G A        F+   A   D 
Sbjct: 230 VKWRSGALGSMNVTMLTYPKNLEGSITILGEKGSVRVGGVAVNEIQHWEFSEPHA--MDE 287

Query: 296 QTLKAEDDRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSI 355
           +   A        G  H    L + N +  +R +    P  D ++GL S+ + +A  LS 
Sbjct: 288 EIKDASYATTSVYGFGH---PLYYDNVIKTMRGE--ATPETDGREGLKSLELLIAMYLSA 342

Query: 356 EKGRFIAI 363
             GR +++
Sbjct: 343 RDGRRVSL 350

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} Length = 336

 Score =  182 bits (463), Expect = 1e-54
 Identities = 56/358 (15%), Positives = 107/358 (29%), Gaps = 31/358 (8%)

Query: 5   DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP 64
             +++  IG+             L   G  +  + +          K  + F        
Sbjct: 3   KKIRFAAIGLAHNHIYDMCQ--QLIDAGAELAGVFES---DSDNRAKFTSLFPSV-PFAA 56

Query: 65  GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAAR 124
             ++L+     D++  +       ++ +  ++  K       KP  TT+     V     
Sbjct: 57  SAEQLITDASIDLIACAVIPCDRAELALRTLDAGK--DFFTAKPPLTTLEQLDAVQRRVA 114

Query: 125 KRPDILVQVGLEYRYMPPVAKLI-QIVKSGSIGQVKMV-AIREHRFPFLVKVNDWNRFNE 182
           +       V    R     A    ++V+ G IG+V     +  HR        DW     
Sbjct: 115 ET-GRKFAVYFNERINVDSALFAGELVQRGEIGRVIQTMGVGPHRERG--ARPDWFYQKR 171

Query: 183 NTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEF 242
             GG L +   H  +    F G+   RV+ S   + +H         P+  D    ++  
Sbjct: 172 QYGGILCDIGIHQIEQFLYFTGNTNARVVTSQTANYHHPHH------PEFEDFGDAMLLG 225

Query: 243 ENGSRGMLDLCMFA---EGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLK 299
           +NG+ G      F         +  + ++G  G  E       V     E+    +   K
Sbjct: 226 DNGATGYFRCDWFTPDGLSVWGDGRLTILGTEGYIEI---RKYVDLTRGESNVVYLVNGK 282

Query: 300 AEDDRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEK 357
            E        +     +     FL   R +     A+       +  + + AQ +  K
Sbjct: 283 GEQRFTPAGSVERA--FFPD--FLRDCRERTE--NAMSQSHIFKATELSILAQQAANK 334

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* Length = 433

 Score =  182 bits (463), Expect = 1e-53
 Identities = 61/370 (16%), Positives = 133/370 (35%), Gaps = 29/370 (7%)

Query: 1   MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL 60
           M  +    Y I+G+G       +       Q   +  +      + ++A  +A  +    
Sbjct: 78  MPEDRRFGYAIVGLGKYALNQILPGFA-GCQHSRIEALVSG---NAEKAKIVAAEYGVDP 133

Query: 61  KVFPGH---QELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCK 117
           +    +    ++      D V +  PN  H +  +      K  HV+ EKP+ T+VADC+
Sbjct: 134 RKIYDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIRAFKAGK--HVMCEKPMATSVADCQ 191

Query: 118 KVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMV-AIREHRFPFLVKVND 176
           +++DAA+   +  + +G    Y P     +++++   +G++ MV                
Sbjct: 192 RMIDAAKAA-NKKLMIGYRCHYDPMNRAAVKLIRENQLGKLGMVTTDNSDVMDQNDPAQQ 250

Query: 177 WNRFNENT--GGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIID 234
           W R       GG+L++   +  +  R  +G  P+ V A    D N +  +      ++ D
Sbjct: 251 W-RLRRELAGGGSLMDIGIYGLNGTRYLLGEEPIEVRAYTYSDPNDERFV------EVED 303

Query: 235 NAYVIVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGRED 294
                + F +G+            +       V G+  K    +  +   +    + +  
Sbjct: 304 RIIWQMRFRSGALSHGASSY---STTTTSRFSVQGD--KAVLLMDPATGYYQNLISVQTP 358

Query: 295 VQTLKAEDDRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLS 354
               ++   +      +  S+ L+H     A+     K      ++G+  V +  A   +
Sbjct: 359 GHANQSMMPQFIMPANNQFSAQLDH--LAEAVINN--KPVRSPGEEGMQDVRLIQAIYEA 414

Query: 355 IEKGRFIAIE 364
              GR +  +
Sbjct: 415 ARTGRPVNTD 424

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} Length = 361

 Score =  176 bits (448), Expect = 3e-52
 Identities = 57/359 (15%), Positives = 127/359 (35%), Gaps = 29/359 (8%)

Query: 5   DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP 64
           D +++  +G+        +N   L   G  +    +        A + +  +    +   
Sbjct: 25  DELRFAAVGLNHNHIYGQVNC--LLRAGARLAGFHEK---DDALAAEFSAVYADA-RRIA 78

Query: 65  GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAAR 124
             +E+L+     ++V +  +    ++ +  + H K   VLV+KP  T+     K+     
Sbjct: 79  TAEEILEDENIGLIVSAAVSSERAELAIRAMQHGK--DVLVDKPGMTSFDQLAKLRRVQA 136

Query: 125 KRPDILVQVGLEYRY-MPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNEN 183
           +    +  +     +  P   K  ++V +G+IG+V  +              DW     +
Sbjct: 137 ET-GRIFSILYSEHFESPATVKAGELVAAGAIGEVVHIVGLGPHRLRRETRPDWFFRRAD 195

Query: 184 TGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFE 243
            GG L +   H  +    F G N   V+++   + +  D       P++ D   + +   
Sbjct: 196 YGGILTDIASHQCEQFLFFTGVNDATVLSASVGNQSVPDA------PELQDTGSIHLST- 248

Query: 244 NGSRGMLDLCMFA---EGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKA 300
             + GM+ +         +  +  + +VG +G          V  A RE G       + 
Sbjct: 249 GRTTGMIHVNWLTPEGMPTWGDGRLFIVGTSG---TIEVRKTVDLAGREGGNHLFLADRN 305

Query: 301 EDDRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGR 359
             + I+   +     +     FL+ IR +     A+  +    ++ + + AQ   E+  
Sbjct: 306 GVEHIDCSRVDLP--FGRQ--FLADIRDRTE--TAMPQERCFKAMELALQAQAIAEQNG 358

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} Length = 383

 Score =  174 bits (443), Expect = 3e-51
 Identities = 77/389 (19%), Positives = 142/389 (36%), Gaps = 38/389 (9%)

Query: 6   TVKYGIIGMGMMGREHFINLHHLRS-------QGVSV----VCIADPHLQSR--QQALKL 52
           T + G+I  G+ GR   +N H +RS        GV +      + DP L  R  ++   L
Sbjct: 4   TQRLGLIMNGVTGRMG-LNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEAL 62

Query: 53  ANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTT 112
           A  F+   +        L      +   +        +L   IN  K  HV  EKP+ T 
Sbjct: 63  AKRFNIA-RWTTDLDAALADKNDTMFFDAATTQARPGLLTQAINAGK--HVYCEKPIATN 119

Query: 113 VADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLV 172
             +  +VV  A  +  +      +  ++P + K+  +  SG  G++  V      + F  
Sbjct: 120 FEEALEVVKLANSK-GVKHGTVQDKLFLPGLKKIAFLRDSGFFGRILSVRGEFGYWVFEG 178

Query: 173 KVND-----WNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNG 227
              +     WN  +E+ GG +++  CH+  ++    G+    V+  G  D+  + +    
Sbjct: 179 GWQEAQRPSWNYRDEDGGGIILDMVCHWRYVLDNLFGN-VQSVVCIGNTDIPERFDEQGK 237

Query: 228 KVP-DIIDNAYVIVEFENGSRGMLDLCMFAEGSKNEQ-EIVVVGNTGKGEAFVPESIVRF 285
           K      D+AY   + E G    +++       +++     V G    G A    S    
Sbjct: 238 KYKATADDSAYATFQLEGGVIAHINMSWVTRVYRDDLVTFQVDGT--HGSAVAGLSDCMI 295

Query: 286 ATREAGREDVQT---LKAEDDRIEYEGLHHGSSY-----LEHLNFLSAIRAKGAKVPAVD 337
             R+A    V      +  D   +++ L    SY      +   F+  +           
Sbjct: 296 QARQATPRPVWNPDEKRLHDFYGDWQKLPDNVSYDNGFKEQWEMFIRHVYEDAP--YKFT 353

Query: 338 LQDGLISVAIGVAAQLSIEKGRFIAIEEV 366
           L +G   V +   A  S ++ R+I +  +
Sbjct: 354 LLEGAKGVQLAECALKSWKERRWIDVAPI 382

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} Length = 387

 Score =  174 bits (443), Expect = 3e-51
 Identities = 60/405 (14%), Positives = 130/405 (32%), Gaps = 70/405 (17%)

Query: 6   TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPG 65
            +++GI G+G  G                +V   DP+   R++       +  P  VF  
Sbjct: 2   KIRFGICGLGFAGSVLMAPAMR-HHPDAQIVAACDPNEDVRERF---GKEYGIP--VFAT 55

Query: 66  HQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARK 125
             E++     D V +++P+  H + ++         H++VEKPL  +  +  ++++A  +
Sbjct: 56  LAEMMQHVQMDAVYIASPHQFHCEHVVQASEQGL--HIIVEKPLTLSRDEADRMIEAVER 113

Query: 126 RPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENT- 184
              + + VG    + P V  L  IV+ GS+G+V M+    +   FL +       + +  
Sbjct: 114 A-GVHLVVGTSRSHDPVVRTLRAIVQEGSVGRVSMLNCF-NYTDFLYRPRRPEELDTSKG 171

Query: 185 GGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFEN 244
           GG +  +  H  D ++   G     V A     ++ K             N   ++  E+
Sbjct: 172 GGIIYNQLPHQIDSIKTITGQRITAVRAMTGR-LDPKRP--------TEGNCAAMLTLED 222

Query: 245 GSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAEDDR 304
           G+  ++    +     +E    +       +     +       E    +++  +     
Sbjct: 223 GACAVMVYSGYDHFDSDEMHFWLAEGGRAKQPNHGGARKVLRQLEGDEAELRRSRYGFGG 282

Query: 305 IEYEGLHHGSSYLEHL-------------------------------------------- 320
              + +  G++  +                                              
Sbjct: 283 PISKSMESGNTDRKQPHFGVMLVTCEHADLRASPEGVLVYGDEGVREVPAITGRGPFSQG 342

Query: 321 ----NFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFI 361
                   AI          D + G  ++ + +A   S   GR +
Sbjct: 343 DTIDELRDAIAGVAP--ALRDARWGKDTLEVCLAVLESSATGRQV 385

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 Length = 340

 Score =  172 bits (438), Expect = 6e-51
 Identities = 78/366 (21%), Positives = 133/366 (36%), Gaps = 45/366 (12%)

Query: 1   MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL 60
           M     ++ GI+G G+  RE  +      S    +  +          A + A     P 
Sbjct: 13  MKPLRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSH---AEEFAKMVGNP- 68

Query: 61  KVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVV 120
            VF  ++ELL+SGL D V ++ P   +   +   +      HV+ EKP+ T V   KKVV
Sbjct: 69  AVFDSYEELLESGLVDAVDLTLPVELNLPFIEKALRKGV--HVICEKPISTDVETGKKVV 126

Query: 121 DAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLV----KVND 176
           + + K  +  V +   +R++P   K  ++V+SG+IG    +  +               D
Sbjct: 127 ELSEKS-EKTVYIAENFRHVPAFWKAKELVESGAIGDPVFMNWQ-IWVGMDENNKYVHTD 184

Query: 177 WNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNA 236
           W +  ++ GG L +   H    MRL +G     + A           +        +D  
Sbjct: 185 WRKKPKHVGGFLSDGGVHHAAAMRLILG-EIEWISAVAK----DLSPLL-----GGMDFL 234

Query: 237 YVIVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQ 296
             I EFENG+ G   +       K  +   + G   KG+  +               D  
Sbjct: 235 SSIFEFENGTVGNYTISY---SLKGNERFEITGT--KGKISIS-------------WDKI 276

Query: 297 TLKAEDDRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIE 356
            L  E+ ++  E  +      E  +F   +  +G           L  +A   A   S  
Sbjct: 277 VLNEEEMKVPQENSY----QKEFEDFYQVVA-EGKPNDLGSPVQALKDLAFIEACVRSAG 331

Query: 357 KGRFIA 362
              F++
Sbjct: 332 NKVFVS 337

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} Length = 359

 Score =  171 bits (436), Expect = 2e-50
 Identities = 66/379 (17%), Positives = 131/379 (34%), Gaps = 44/379 (11%)

Query: 3   ANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LK 61
           +    +  I+G G MG  H           + V  + D   + R+ A           LK
Sbjct: 2   SLKKYQLVIVGYGGMGSYHVTLASAAD--NLEVHGVFDILAEKREAA-------AQKGLK 52

Query: 62  VFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVD 121
           ++  ++ +L     D V+++TPN +H ++ +  +   K  HV+ EKP+  T  D   ++D
Sbjct: 53  IYESYEAVLADEKVDAVLIATPNDSHKELAISALEAGK--HVVCEKPVTMTSEDLLAIMD 110

Query: 122 AARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFN 181
            A++  +    V    R+      + ++ +  +IG++  +  R H    +    DW    
Sbjct: 111 VAKRV-NKHFMVHQNRRWDEDFLIIKEMFEQKTIGEMFHLESRVHGANGI--PGDWRHLK 167

Query: 182 ENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVE 241
            + GG +++   H  D +   V SN   V A+ +  +            ++ D     + 
Sbjct: 168 AHGGGMVLDWGVHLLDQLLFLVDSNVKSVSANLSFALG----------DEVDDGFVTFIT 217

Query: 242 FENGSRGMLDLCMFAEGSKNEQEIVVVGNTG---KGEAFVPESIVRFATREAGREDVQTL 298
           FENG    +++              V G  G     +  +   IV+        E     
Sbjct: 218 FENGITAQIEVGTTNFI--KLPRWYVKGTEGTGIIHDWDLSGEIVKPTALAKTSEPTPIK 275

Query: 299 KAEDDRIEYEGLHHGSSYLEHL------------NFLSAIRAKGAKVPAVDLQDGLISVA 346
             +            ++    L            NF+  +       P V  ++    + 
Sbjct: 276 AGQGLTKTMAPPSEEATNTLSLPAPAKLAPSFYNNFVDVLNNTSE--PIVQNEEVYQVLK 333

Query: 347 IGVAAQLSIEKGRFIAIEE 365
           +  A   + E  R +   E
Sbjct: 334 LIEAIFEAAETNRTVHSIE 352

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 Length = 319

 Score =  162 bits (411), Expect = 4e-47
 Identities = 48/353 (13%), Positives = 118/353 (33%), Gaps = 48/353 (13%)

Query: 6   TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPG 65
            ++ G++G+G + ++ ++ +    +   ++     P   +R +AL +  ++   +     
Sbjct: 5   KLRIGVVGLGGIAQKAWLPVLA-AASDWTLQGAWSP---TRAKALPICESWR--IPYADS 58

Query: 66  HQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARK 125
              L  S  CD V V +   +H+ ++  ++N     HV V+KPL   + D +++V+ A +
Sbjct: 59  LSSLAAS--CDAVFVHSSTASHFDVVSTLLNAGV--HVCVDKPLAENLRDAERLVELAAR 114

Query: 126 RPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENTG 185
           +  + + VG   R+ P   +L   + + +    +M   R +                +  
Sbjct: 115 K-KLTLMVGFNRRFAPLYGELKTQLATAASL--RMDKHRSNSVG-----------PHDLY 160

Query: 186 GTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENG 245
            TL++   H  D      G     +     +              D  +  +    F  G
Sbjct: 161 FTLLDDYLHVVDTALWLSGG-KASLDGGTLLT------------NDAGEMLFAEHHFSAG 207

Query: 246 SRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAEDDRI 305
              +   CM        + +  V +    +      +  +          + +      +
Sbjct: 208 PLQITT-CMHRRAGSQRETVQAVTDGALIDI---TDMREWREERGQGVVHKPIPGWQSTL 263

Query: 306 EYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKG 358
           E  G           +F+  ++ +   VP    +  +++  I           
Sbjct: 264 EQRGFVG-----CARHFIECVQNQ--TVPQTAGEQAVLAQRIVDKIWRDAMSE 309

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} Length = 393

 Score =  162 bits (413), Expect = 1e-46
 Identities = 76/384 (19%), Positives = 138/384 (35%), Gaps = 32/384 (8%)

Query: 1   MAANDTVKYGIIGMGMMGREH-----FINLHHLRSQGVSVVCIADPHLQSRQQALKLANA 55
             +   +  G+IG G MG+ H      +       +   +V +A+ +    +     A  
Sbjct: 20  FQSMKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEAR---AGE 76

Query: 56  FDWPLKVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVAD 115
           F +  K     + L+     DVV V+TPN  H ++ +  +   K  HV  EKP+    AD
Sbjct: 77  FGFE-KATADWRALIADPEVDVVSVTTPNQFHAEMAIAALEAGK--HVWCEKPMAPAYAD 133

Query: 116 CKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMV-AIREHRFPFLVKV 174
            ++++  A +    +  +G  Y   P +  + ++V  G IG+V  V    +  F     +
Sbjct: 134 AERMLATAERS-GKVAALGYNYIQNPVMRHIRKLVGDGVIGRVNHVRVEMDEDFMADPDI 192

Query: 175 NDWNRFNENTG-GTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVP-DI 232
             + +   + G G L +   H   L+    G     V+         +     G+   + 
Sbjct: 193 FFYWKSELSAGYGALDDFAVHPLSLLWYLFGH-VEAVITDMVKPYPDRPLSEGGRRAVEN 251

Query: 233 IDNAYVIVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPES----IVRFATR 288
            D A V++  + G   +L     A G K    + + G+ G    +  E      +  A  
Sbjct: 252 HDAANVLMRLDGGISAVLMANRAAWGRKGRIALQIYGSKG-SILYDQERMNEFELYQAEG 310

Query: 289 EAGREDVQTLKAEDDRIEYEGLH----HGSSYL-----EHLNFLSAIRAKGAKVPAVDLQ 339
               +  + + A      Y+       HG  +      E    + AI  +      V  +
Sbjct: 311 PGSEQGFRKILAAPAHRPYDRFIPAPGHGLGFNDLKIIECRELIRAITGE--PSSIVTFK 368

Query: 340 DGLISVAIGVAAQLSIEKGRFIAI 363
           DGL       A   S  + R+I I
Sbjct: 369 DGLRIEKSVHAMAQSFHERRWIEI 392

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} Length = 315

 Score =  155 bits (395), Expect = 7e-45
 Identities = 59/354 (16%), Positives = 110/354 (31%), Gaps = 47/354 (13%)

Query: 1   MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL 60
            A N  V+  +IG G  G+ +   +  L   G ++V +A  +         +        
Sbjct: 5   PANNSPVRLALIGAGRWGKNYIRTIAGLP--GAALVRLASSN---PDNLALVPPGC---- 55

Query: 61  KVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVV 120
            +    + ++ +   + V+++TP  TH +I +  I   K   VLVEKPL   +A+ + V 
Sbjct: 56  VIESDWRSVVSAPEVEAVIIATPPATHAEITLAAIASGK--AVLVEKPLTLDLAEAEAVA 113

Query: 121 DAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMV-AIREHRFPFLVKVNDWNR 179
            AA+    ++V V     + P    L   +   SIG +  V +   +  P+         
Sbjct: 114 AAAKAT-GVMVWVEHTQLFNPAWEALKADL--TSIGPILAVRSEAGNHGPYR-------- 162

Query: 180 FNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVI 239
                   L +   H   ++   +G +P    AS A               D  +   V 
Sbjct: 163 --PGGVPMLWDWGAHDVSMVLDLMGRDPDSTSASWAARGE----------KDGGEAGDVT 210

Query: 240 VEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGK-GEAFVPESIVRFATREAGREDVQTL 298
           +        +             + + V G  G           +     +         
Sbjct: 211 LTLAFS--TVEAHIRLCNTMDKCRRLAVFGEAGTLVMDDRATDKLTLHPPQPDGN----- 263

Query: 299 KAEDDRIEYEGLHHGSSY-LEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAA 351
                +     +            F  A+R    +     L+ GL  V +  A 
Sbjct: 264 -WPVGQGHALTVTDEMPLTRAVRLFAGAVR--QPEPGPSPLELGLRVVRVLGAC 314

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} Length = 308

 Score =  154 bits (391), Expect = 2e-44
 Identities = 50/355 (14%), Positives = 134/355 (37%), Gaps = 56/355 (15%)

Query: 6   TVKYGIIGMGMMGREHFINLHHLR----SQGVSVVCIADPHLQSRQQALKLANAFDWPLK 61
            +K G+IG+G + ++      +L     S+    V    P+   + +  K+ + +   + 
Sbjct: 6   NIKMGMIGLGSIAQKA-----YLPILTKSERFEFVGAFTPN---KVKREKICSDYR--IM 55

Query: 62  VFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVD 121
            F   + L     CD + + +   THY+I+  ++N     HV V+KPL +TV+  +++++
Sbjct: 56  PFDSIESLAKK--CDCIFLHSSTETHYEIIKILLNLGV--HVYVDKPLASTVSQGEELIE 111

Query: 122 AARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFN 181
            + K+ ++ + VG   R+ P   ++          ++  + I +H     ++        
Sbjct: 112 LSTKK-NLNLMVGFNRRFCPMYKEIKNN-----ATEIVSINICKHG-LNSLRNVR----- 159

Query: 182 ENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVE 241
                TL++   H  D          + +        ++K+          +      ++
Sbjct: 160 --FDSTLIDDYIHVIDTALWLANE-DVEISGEDLFLTDNKN----------LIFVSHKLK 206

Query: 242 FENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAE 301
            +N     ++  M  +     +++ ++           +++      E G   ++   A 
Sbjct: 207 GKN---FSINTSMHRDSGTKLEQVEILSKGKIQRV---KNLNVLEIEEGGNLTLKQSGAW 260

Query: 302 DDRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIE 356
            + ++ +G           +F+  I       PA++ ++ + +  +      S++
Sbjct: 261 VNILKQKGFED-----ISNHFIDCIENN--IKPAINGEECIKAQRLLEKIINSVK 308

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 Length = 323

 Score =  154 bits (391), Expect = 3e-44
 Identities = 49/352 (13%), Positives = 121/352 (34%), Gaps = 45/352 (12%)

Query: 6   TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPG 65
           ++K  +IG+G + ++ ++ +   +   + +V +      + +    LA  +         
Sbjct: 2   SLKIAMIGLGDIAQKAYLPVLA-QWPDIELV-LCTR---NPKVLGTLATRYRVS-ATCTD 55

Query: 66  HQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARK 125
           ++++L  G  D V++      H  +    ++        V+KPL  +  +C+ + + A K
Sbjct: 56  YRDVLQYG-VDAVMIHAATDVHSTLAAFFLHLGI--PTFVDKPLAASAQECENLYELAEK 112

Query: 126 RPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENTG 185
                + VG   R++P   + +  +     G ++ +   +HR               +  
Sbjct: 113 H-HQPLYVGFNRRHIPLYNQHLSELAQQECGALRSLRWEKHRHALP----------GDIR 161

Query: 186 GTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENG 245
             + +   H  D + L    N   +  +  +          G +      A + V+++ G
Sbjct: 162 TFVFDDFIHPLDSVNLSRQCNLDDLHLTYHMS--------EGLL------ARLDVQWQTG 207

Query: 246 SRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAEDDRI 305
              +L   M  +     + +    +         +S  +       +E    LK     +
Sbjct: 208 D-TLLHASMNRQFGITTEHVTASYDNVAYLF---DSFTQGKMWRDNQESRVALKDWTPML 263

Query: 306 EYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEK 357
             +G       ++   +L    A   K+P   ++  L S  +  A    I +
Sbjct: 264 ASKGFDA---MVQD--WLQVAAAG--KLPTHIIERNLASHQLAEAICQQITQ 308

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A Length = 438

 Score =  157 bits (397), Expect = 4e-44
 Identities = 54/427 (12%), Positives = 122/427 (28%), Gaps = 65/427 (15%)

Query: 1   MAANDTVKYGIIGM----GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF 56
           +     ++ G +G+    G   + H+  +  L S    +  +  P +++           
Sbjct: 15  VPNAAPIRVGFVGLNAAKGWAIKTHYPAILQL-SSQFQITALYSPKIETSIAT---IQRL 70

Query: 57  DWP-LKVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPK----PHHVLVEKPLCT 111
                  FP  +    S   D++V++    +HY+++M ++   K      ++ VE  L  
Sbjct: 71  KLSNATAFPTLESFASSSTIDMIVIAIQVASHYEVVMPLLEFSKNNPNLKYLFVEWALAC 130

Query: 112 TVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFL 171
           ++   + +  AA +R  +   + L+ R  P + +  +++  G IG +  + I  +   + 
Sbjct: 131 SLDQAESIYKAAAER-GVQTIISLQGRKSPYILRAKELISQGYIGDINSIEIAGNGGWYG 189

Query: 172 --VKVNDWNRFN--ENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGA--------VDVN 219
               V          N    +     H  D+++    S   R+ A           +D  
Sbjct: 190 YERPVKSPKYIYEIGNGVDLVTTTFGHTIDILQYMTSSYFSRINAMVFNNIPEQELIDER 249

Query: 220 HKDEMYNGKVPDIIDNAYVIVEFENGSRG---MLDLCMFAEGSKNEQEIVVVG------- 269
                       + D+        NG+             +       I + G       
Sbjct: 250 GNRLGQRVPK-TVPDHLLFQGTLLNGNVPVSCSFKGGKPTKKFTKNLVIDIHGTKRDLKL 308

Query: 270 ---------------NTGKGEAFVPESIVRFATREAGREDVQTLKAEDDRIEYEGLHHGS 314
                           +G      P +  + A  + G +  + +        Y  +    
Sbjct: 309 EGDAGFAEISNLVLYYSGTRANDFPLANGQQAPLDPGYDAGKEIMEVYHLRNYNAIVGNI 368

Query: 315 SYLEHL-------------NFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFI 361
             L                     +           L D LI   +  +   S   G  +
Sbjct: 369 HRLYQSISDFHFNTKKIPELPSQFVMQGFDFEGFPTLMDALILHRLIESVYKSNMMGSTL 428

Query: 362 AIEEVME 368
            +  +  
Sbjct: 429 NVSNISH 435

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} Length = 364

 Score =  154 bits (392), Expect = 6e-44
 Identities = 75/377 (19%), Positives = 145/377 (38%), Gaps = 39/377 (10%)

Query: 3   ANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LK 61
           +N+T+   +IG G +G+     L      G+++  +A    +  ++        D P + 
Sbjct: 4   SNNTINIALIGYGFVGKTFHAPLIR-SVPGLNLAFVASRDEEKVKR--------DLPDVT 54

Query: 62  VFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVD 121
           V    +  +     D+VV+++PN TH  +    +N  K  HV+V+KP    + + ++++ 
Sbjct: 55  VIASPEAAVQHPDVDLVVIASPNATHAPLARLALNAGK--HVVVDKPFTLDMQEARELIA 112

Query: 122 AARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRF-PFLVKVNDWNRF 180
            A ++   L+ V    R+      + Q+++ G++G VK       RF P +     W   
Sbjct: 113 LAEEK-QRLLSVFHNRRWDSDYLGIRQVIEQGTLGAVKHFESHFDRFRPEVRV--RWREQ 169

Query: 181 NENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIV 240
           N    G   +   H  D      G  P  V  + A   +           +I D A+V++
Sbjct: 170 NVPGSGLWFDLGPHLIDQALQLFGL-PQSVQGNIATLRDG---------AEINDWAHVVL 219

Query: 241 EFENGSRGMLDLCMFAEGSKNEQEIVVVGNTG---KGEAFVPESIVRFATR----EAGRE 293
            +    + +L   M   G        V G+ G   K  A   ES +         + G++
Sbjct: 220 NYPAH-KVILHCSMLVAG--GSSRFTVHGDKGSVIKARADQQESQLLAGVVPGSADWGQD 276

Query: 294 DVQ-TLKAEDDRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQ 352
           D    +     +   +    G     ++    A++ + A    V   + L  +A+  AA 
Sbjct: 277 DDPLVIYDASLQAHAQATPQGDQRQYYMLIRDALKGQIA--NPVPPVEALAVMAVLEAAV 334

Query: 353 LSIEKGRFIAIEEVMEE 369
            S E G    ++   +E
Sbjct: 335 RSAESGMVQTLDLSDDE 351

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} Length = 362

 Score =  154 bits (390), Expect = 1e-43
 Identities = 69/380 (18%), Positives = 132/380 (34%), Gaps = 43/380 (11%)

Query: 3   ANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LK 61
           + + +K G+   GM G+          +    +  I +   +  ++         +P   
Sbjct: 2   SLEIIKTGLAAFGMSGQVFHAPFIS-TNPHFELYKIVERSKELSKE--------RYPQAS 52

Query: 62  VFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVD 121
           +    +EL +    D++VV+TP+ THY+     +   K  +V+VEKP  +T    ++++ 
Sbjct: 53  IVRSFKELTEDPEIDLIVVNTPDNTHYEYAGMALEAGK--NVVVEKPFTSTTKQGEELIA 110

Query: 122 AARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFN 181
            A+K+  +++ V    R+      +  I+    +G++        R+   +K N W    
Sbjct: 111 LAKKK-GLMLSVYQNRRWDADFLTVRDILAKSLLGRLVEYESTFARYRNFIKPNTWKETG 169

Query: 182 ENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVE 241
           E+ GG       H  D      G  P  V A    D+    E   GKV    D   + + 
Sbjct: 170 ESGGGLTYNLGSHLIDQAIQLFGM-PEAVFA----DLGILRE--GGKVD---DYFIIHLL 219

Query: 242 FENGSRGM---LDLCMFAEGSKNEQEIVVVGNTG---KGEAFVPESIVRFATR------- 288
             + +  +   L           E    + G  G   K      E+ +            
Sbjct: 220 HPSLAPNVKITLKASYLMRE--AEPRFALHGTLGSYVKYGVDKQEAALLAGEIPERPNWG 277

Query: 289 EAGREDVQTLKAEDDRIEYEG---LHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISV 345
           E   ++   L  E +  E         G+    + N    +            QD L  +
Sbjct: 278 EESEQEWGLLHTEINGKEICRKYPGIAGNYGGFYQNIYEHLCLGQP--LETHAQDILNVI 335

Query: 346 AIGVAAQLSIEKGRFIAIEE 365
            I  AA  S  + + + ++E
Sbjct: 336 RIIEAAYQSHRENKIVNLKE 355

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A Length = 349

 Score =  152 bits (387), Expect = 2e-43
 Identities = 56/372 (15%), Positives = 110/372 (29%), Gaps = 50/372 (13%)

Query: 6   TVKYGIIGMGMMGREH---FINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LK 61
           TVK G IG G     +   ++ +     + + V  I D H+  +  A      F    + 
Sbjct: 2   TVKMGFIGFGKSANRYHLPYVMIR----ETLEVKTIFDLHVNEKAAA-----PFKEKGVN 52

Query: 62  VFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVD 121
                 ELL     +++ + TP  THY +    I   K   V+VEKP C T+   +++  
Sbjct: 53  FTADLNELLTDPEIELITICTPAHTHYDLAKQAILAGK--SVIVEKPFCDTLEHAEELFA 110

Query: 122 AARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRF-PFLVKVNDWNRF 180
             +++  ++V      R+      + Q+V+ G +G++  V      + P           
Sbjct: 111 LGQEK-GVVVMPYQNRRFDGDYLAMKQVVEQGFLGEINEVETHIDYYRP-----GSITEQ 164

Query: 181 NENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIV 240
                G+      H  D M    G  P +V      +              + +   V +
Sbjct: 165 GPKENGSFYGLGIHLMDRMIALFGR-PDQVTYDIRNNEVS---------EAVDNYFDVDL 214

Query: 241 EFENGSRGMLDLCMFAEGSKNEQEIVVVGNTG--KGEAFVPESIVRFATREAGREDVQTL 298
            + +  +  +               +V G+ G         +     A            
Sbjct: 215 HYGSKLKVKVKTNHSVASP--YPRFIVHGSNGSFIKYGEDQQENDLKAGIMPDAPGFGED 272

Query: 299 KAEDDRIEYEGLHHGSSYLEHL------------NFLSAIRAKGAKVPAVDLQDGLISVA 346
                        +G    + +                 ++        V  +  L ++ 
Sbjct: 273 SPMYYGEVTYRNGNGDWIKKQIKTPVGDYGRYYDAVYETLKNGAP--QLVTKEQALTNIE 330

Query: 347 IGVAAQLSIEKG 358
           I  A  L+    
Sbjct: 331 ILEAGFLNPSPS 342

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A Length = 479

 Score =  154 bits (391), Expect = 6e-43
 Identities = 49/296 (16%), Positives = 110/296 (37%), Gaps = 29/296 (9%)

Query: 1   MAANDTVKYGIIGM----GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF 56
           + ++  ++ G +G+      + + HF+ +  L SQ   +V + +P L+S  Q        
Sbjct: 34  VPSSRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQ-FQIVALYNPTLKSSLQT---IEQL 89

Query: 57  DWPL-KVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINH----PKPHHVLVEKPLCT 111
                  F   +        D++VVS     HY+++ +I+ H        ++ VE  L  
Sbjct: 90  QLKHATGFDSLESFAQYKDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAA 149

Query: 112 TVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREH----R 167
           +V   +++   +++R ++   + L+ R  P + +  +++  G IG +  + I  +     
Sbjct: 150 SVQQAEELYSISQQRANLQTIICLQGRKSPYIVRAKELISEGCIGDINSIEISGNGGWYG 209

Query: 168 FPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGA--------VDVN 219
           +   ++  ++    E+    +     H  D+++   GS   ++ A  +        +D N
Sbjct: 210 YERPMRSPEYLYDIESGVNLISNSFGHTIDVLQYITGSYFQKINAMISNNIPTQFLLDEN 269

Query: 220 HKDEMYNGKVPDIIDNAYVIVEFENGSRG---MLDLCMFAEGSKNEQEIVVVGNTG 272
            K            D+       ENG              +       I + G  G
Sbjct: 270 GKRTKETISK-TCPDHLLFQGILENGKVPVSCSFKGGTPVKKLTKNLVIDIHGTKG 324

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} Length = 352

 Score =  151 bits (383), Expect = 9e-43
 Identities = 65/377 (17%), Positives = 120/377 (31%), Gaps = 44/377 (11%)

Query: 2   AANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-L 60
           A  D +K G++G G   +     L    + G+ +  ++                 DWP +
Sbjct: 3   AMADKIKVGLLGYGYASKTFHAPLIM-GTPGLELAGVSSSDASKVHA--------DWPAI 53

Query: 61  KVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVV 120
            V    Q L +    D++V+ TPN TH+ +    +   K  HV+V+KP   T++    + 
Sbjct: 54  PVVSDPQMLFNDPSIDLIVIPTPNDTHFPLAQSALAAGK--HVVVDKPFTVTLSQANALK 111

Query: 121 DAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRF 180
           + A     +L+ V    R+      L  ++  GS+G V        R+   ++   W   
Sbjct: 112 EHADDA-GLLLSVFHNRRWDSDFLTLKTLLAEGSLGNVVYFESHFDRYRPEIRQR-WREQ 169

Query: 181 NENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIV 240
               GG   +   H  D      G  P  +     +                +D  + ++
Sbjct: 170 AGAGGGIWYDLGPHLLDQALQLFG-LPETLNVDLGMLRPG---------SQSVDYFHAVL 219

Query: 241 EFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKA 300
            +    R +L   + A         +V G   +G         +    +AG    Q    
Sbjct: 220 SYPGQ-RVVLHSTVLAAAETA--RYIVHGT--QGSYIKFGVDPQEDRLKAGERLPQADWG 274

Query: 301 EDDRIEYEGLHHGSSYLEHL-------------NFLSAIRAKGAKVPAVDLQDGLISVAI 347
            D R     L H +   E                   AI         V   + +  + +
Sbjct: 275 YDMRDGIVTLSHDNVLTEKPLLTLPGNYPAYYAGIRDAIWGTAP--NPVPATEAIKVMEL 332

Query: 348 GVAAQLSIEKGRFIAIE 364
                 S ++ + + I 
Sbjct: 333 IELGIASDQQKKALPII 349

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A Length = 358

 Score =  148 bits (376), Expect = 1e-41
 Identities = 72/382 (18%), Positives = 141/382 (36%), Gaps = 44/382 (11%)

Query: 3   ANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LK 61
           + DT+K GI+G G+ G      L         +  I     +  ++        D+P  +
Sbjct: 2   SLDTIKVGILGYGLSGSVFHGPLLD-VLDEYQISKIMTSRTEEVKR--------DFPDAE 52

Query: 62  VFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVD 121
           V    +E+ +    ++V+V+TP+  HY+  M  I   K  HV++EKP+  T  + + +  
Sbjct: 53  VVHELEEITNDPAIELVIVTTPSGLHYEHTMACIQAGK--HVVMEKPMTATAEEGETLKR 110

Query: 122 AARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRF-PFLVKVNDWNRF 180
           AA ++  +L+ V    R+      + +++  GS+  +    +  +R+ P +     W   
Sbjct: 111 AADEK-GVLLSVYHNRRWDNDFLTIKKLISEGSLEDINTYQVSYNRYRPEV--QARWREK 167

Query: 181 NENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIV 240
                GTL +   H  D      G  P  V A+      +          + +D  ++ +
Sbjct: 168 EGTATGTLYDLGSHIIDQTLHLFG-MPKAVTANVMAQREN---------AETVDYFHLTL 217

Query: 241 EFENGSRGMLDLCMFAEGSKNEQEIVVVGNTG---KGEAFVPESIVRFATR--------- 288
           ++    + +L          N     + G      K      E  +R   +         
Sbjct: 218 DY-GKLQAILYGGSIV--PANGPRYQIHGKDSSFIKYGIDGQEDALRAGRKPEDDSWGAD 274

Query: 289 -EAGREDVQTLKAEDDRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAI 347
                  + T++  D + E     +GS    +     +IR   A    V  ++G+  + I
Sbjct: 275 VPEFYGKLTTIRGSDKKTETIPSVNGSYLTYYRKIAESIREGAA--LPVTAEEGINVIRI 332

Query: 348 GVAAQLSIEKGRFIAIEEVMEE 369
             AA  S ++ R I +E     
Sbjct: 333 IEAAMESSKEKRTIMLEHEGHH 354

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} Length = 345

 Score =  142 bits (361), Expect = 1e-39
 Identities = 55/366 (15%), Positives = 106/366 (28%), Gaps = 39/366 (10%)

Query: 6   TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPG 65
            +    IG G     + +     R     V  I   H +  +QA   ++           
Sbjct: 2   VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHI-----HFTSD 56

Query: 66  HQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARK 125
             E+L+     +VVV T   +H++     +   K  +VLVEKP   T+A  K++   A+ 
Sbjct: 57  LDEVLNDPDVKLVVVCTHADSHFEYAKRALEAGK--NVLVEKPFTPTLAQAKELFALAKS 114

Query: 126 RPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENTG 185
           +  + V      R+        + ++SG +G++  V      +          +      
Sbjct: 115 K-GLTVTPYQNRRFDSCFLTAKKAIESGKLGEIVEVESHFDYYR----PVAETKPGLPQD 169

Query: 186 GTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENG 245
           G       H  D +    G  P  V        N  +           D+ +    F   
Sbjct: 170 GAFYGLGVHTMDQIISLFGR-PDHVAYDIRSLRNKAN----------PDDTFEAQLFYGD 218

Query: 246 SRGMLDLCMFAEGSKNEQEIVVVGNTG---KGEAFVPESIVRFATR----EAGRED---V 295
            + ++      +      + +V G  G   K      E+ ++            +D   V
Sbjct: 219 LKAIVKTSHLVKID--YPKFIVHGKKGSFIKYGIDQQETSLKANIMPGEPGFAADDSVGV 276

Query: 296 QTLKAEDDRIEYEGLH--HGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQL 353
                ++     E +    G     +      I         V   + L ++ I      
Sbjct: 277 LEYVNDEGVTVREEMKPEMGDYGRVYDALYQTITHGAP--NYVKESEVLTNLEILERGFE 334

Query: 354 SIEKGR 359
                 
Sbjct: 335 QASPST 340

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} Length = 330

 Score =  134 bits (339), Expect = 1e-36
 Identities = 55/339 (16%), Positives = 104/339 (30%), Gaps = 57/339 (16%)

Query: 6   TVKYGIIGMGMMGREHFINLHHL----RSQGVSVVCIADPHLQSRQQALKLANAFDWPLK 61
            +   I+G+G + R+      HL    ++    +V  A  H                   
Sbjct: 25  PINLAIVGVGKIVRDQ-----HLPSIAKNANFKLVATASRH----------GTVEGVN-- 67

Query: 62  VFPGHQELLDSGL-CDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVV 120
            +   + +LD+    D V +  P    Y+     +   K  HV +EKP   T+++   + 
Sbjct: 68  SYTTIEAMLDAEPSIDAVSLCMPPQYRYEAAYKALVAGK--HVFLEKPPGATLSEVADLE 125

Query: 121 DAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRF 180
             A K+    +      RY P V      + S +I  V ++   + R        + +  
Sbjct: 126 ALANKQ-GASLFASWHSRYAPAVEAAKAFLASTTIKSVHVIWKEDVRHWH----PNQDWI 180

Query: 181 NENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIV 240
            +  G  + +   +   ++   +        A      N           D    A +  
Sbjct: 181 WQAGGLGVFDPGINALSIVTHILPRPVFITGAVLEFPENR----------DAPIAADIHF 230

Query: 241 EFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKA 300
              +G     +      G   +Q   +V  T  G+      +V          D +   A
Sbjct: 231 RDADGLPVHAEFDWRQTG---KQSWDIVAETAAGQ------MVLSEGGAKLSIDGRLTFA 281

Query: 301 EDDRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQ 339
           E ++ EY  L           F   I+A  + V    L+
Sbjct: 282 EPEQ-EYPSL------YRR--FAEIIKAGKSDVDVAPLR 311

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* Length = 444

 Score =  134 bits (338), Expect = 1e-35
 Identities = 59/410 (14%), Positives = 117/410 (28%), Gaps = 61/410 (14%)

Query: 2   AANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-- 59
                V+   I +G+ G+ H  N+       V +V  ADP      +A ++         
Sbjct: 16  FNPKKVRIAFIAVGLRGQTHVENMARR--DDVEIVAFADPDPYMVGRAQEILKKNGKKPA 73

Query: 60  ---LKVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADC 116
                    ++ +L     D V VS+P   H++  +  +   K   V +E     T+ +C
Sbjct: 74  KVFGNGNDDYKNMLKDKNIDAVFVSSPWEWHHEHGVAAMKAGK--IVGMEVSGAITLEEC 131

Query: 117 KKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMV-AIREHRFPFLVKVN 175
              V  + +   + +       Y   V  ++ +V+ G  G++       +H    ++  +
Sbjct: 132 WDYVKVSEQT-GVPLMALENVCYRRDVMAILNMVRKGMFGELVHGTGGYQHDLRPVLFNS 190

Query: 176 DWN-------------------RFNENTGGTLVEKCCHFFDLMR-------------LFV 203
             N                   R N            H    +              L  
Sbjct: 191 GINGKNGDGVEFGEKAFSEAKWRTNHYKNRNGELYPTHGVGPLHTMMDINRGNRLLRLSS 250

Query: 204 GSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENGSRGMLDLCMFAEGSKNEQ 263
            ++  R +    VD   +            D     ++  NG   ++     +       
Sbjct: 251 FASKARGLHKYIVDKGGESHPNAKVEWKQGDIVTTQIQCHNG-ETIVLTHDTSLQRPYNL 309

Query: 264 EIVVVGNTGKGEAFVPESIV-------RFATREAGREDVQTLKAEDDRIEYEGL------ 310
              V G  G  E F             +        +  +    E D   ++        
Sbjct: 310 GFKVQGTEGLWEDFGWGEAAQGFIYFEKIMNHSHRWDSSEKWIKEYDHPMWKKHEQKAVG 369

Query: 311 --HHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKG 358
             H G  Y     F+  I+    +   +D+ D     +I   ++ SI + 
Sbjct: 370 AGHGGMDYFLDNTFVECIKRN--EAFPLDVYDLATWYSITPLSEKSIAEN 417

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* Length = 350

 Score =  126 bits (318), Expect = 2e-33
 Identities = 63/345 (18%), Positives = 121/345 (35%), Gaps = 40/345 (11%)

Query: 2   AANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLK 61
           A  + ++ G+IG   +     +           V  IA    +   +A +    F    +
Sbjct: 23  ANANPIRVGVIGCADIAWRRALPALE-AEPLTEVTAIAS---RRWDRAKRFTERFG--GE 76

Query: 62  VFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVD 121
              G+  LL+    D V V  P + H + +   +   K  HVL EKPL T     +++  
Sbjct: 77  PVEGYPALLERDDVDAVYVPLPAVLHAEWIDRALRAGK--HVLAEKPLTTDRPQAERLFA 134

Query: 122 AARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFN 181
            AR+R  +L+     + + P   ++  ++  G IG+++        F    K     R+ 
Sbjct: 135 VARER-GLLLMENFMFLHHPQHRQVADMLDEGVIGEIRSF---AASFTIPPKPQGDIRYQ 190

Query: 182 -ENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIV 240
            +  GG L++   +      LF+G++   V A    + +           D++     ++
Sbjct: 191 ADVGGGALLDIGVYPIRAAGLFLGADLEFVGAVLRHERDR----------DVVVGGNALL 240

Query: 241 EFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKA 300
               G    L   M    +         G+   G  ++     R  T  A  + V  ++ 
Sbjct: 241 TTRQGVTAQLTFGMEHAYT---NNYEFRGS--TGRLWMN----RVFTPPATYQPVVHIE- 290

Query: 301 EDDRIEYEGLHHGSSY---LEHLNFLSAIRAKGAKVPAVDLQDGL 342
             D  E   L     +   +    F  A+ +   + P    +D L
Sbjct: 291 RQDHAEQFVLPAHDQFAKSIRA--FAQAVLSG--EHPREWSEDSL 331

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* Length = 312

 Score =  123 bits (310), Expect = 1e-32
 Identities = 39/269 (14%), Positives = 84/269 (31%), Gaps = 25/269 (9%)

Query: 7   VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADP-----HLQSRQQALKLANAFDWPL 60
            ++ + G+ G +   H   +  +    V+ +  A             +      AF+  L
Sbjct: 4   TRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYL 63

Query: 61  KVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVV 120
                          D + +++PN  HY  +   +      + L EKPL     +  ++ 
Sbjct: 64  -----EDLRDRGEGVDYLSIASPNHLHYPQIRMALRLGA--NALSEKPLVLWPEEIARLK 116

Query: 121 DAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRF 180
           +   +     V   L+ R  P +  L + +      +  ++     R  +  K   W   
Sbjct: 117 ELEARTG-RRVYTVLQLRVHPSLLALKERLGQEKGAKDVVLTYVTGRGKWYGK--SWKVD 173

Query: 181 NENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIV 240
              +GG       HFFDL+  ++    + V         +           +      + 
Sbjct: 174 EAKSGGLATNIGIHFFDLLA-WLFGRALHVEVHARTPTVNA--------GYLELEGARVR 224

Query: 241 EFENGSRGMLDLCMFAEGSKNEQEIVVVG 269
            F +     +   +  +G +  + I V G
Sbjct: 225 WFLSIDPSFVPEPLRRQGKRTYRSIAVDG 253

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* Length = 294

 Score =  120 bits (303), Expect = 8e-32
 Identities = 47/317 (14%), Positives = 95/317 (29%), Gaps = 50/317 (15%)

Query: 1   MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL 60
           +  +      ++G+G  G     +L   R    + + +     +    +L          
Sbjct: 2   ITNSGKFGVVVVGVGRAGSVRLRDLKDPR--SAAFLNLIGFVSRRELGSLDEVRQISL-- 57

Query: 61  KVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVV 120
                 ++ L S   DV  + + + +H   +   +   K  HVLVE P+  + A  +++ 
Sbjct: 58  ------EDALRSQEIDVAYICSESSSHEDYIRQFLQAGK--HVLVEYPMTLSFAAAQELW 109

Query: 121 DAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRF 180
           + A ++   ++        M     L + V    + +         RF       +   F
Sbjct: 110 ELAAQK-GRVLHEEHVELLMEEFEFLRREVLGKELLKG------SLRFTASPLEEERFGF 162

Query: 181 NENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIV 240
              +G             +    G     + A+       K++ Y            V +
Sbjct: 163 PAFSGI-------SRLTWLVSLFGE-LSLISATL---EERKEDQY--------MKMTVQL 203

Query: 241 EFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVR----------FATREA 290
           E +N             G K  + +     +G  E  VP   V           F  +  
Sbjct: 204 ETQNKGLLSWIEEK-GPGLKRNRYVNFQFTSGSLE-EVPSVGVNKNIFLKDQDIFVQKLL 261

Query: 291 GREDVQTLKAEDDRIEY 307
            +   + L AE  RI +
Sbjct: 262 DQVSAEDLAAEKKRIMH 278

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} Length = 398

 Score =  122 bits (307), Expect = 1e-31
 Identities = 71/387 (18%), Positives = 131/387 (33%), Gaps = 53/387 (13%)

Query: 4   NDTVKYGIIGMG---MMGREHFINLH-HLRSQGVSVVCIADPHLQSRQQALKLANAFDWP 59
              +++ ++G G    +G  H            V+     DP      +           
Sbjct: 10  PQPIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDP-----IRGSAFGEQLGVD 64

Query: 60  L-KVFPGHQELLD-----SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTV 113
             + +  +  + +     +     V ++TPN THY I    +      HV+ EKPLC TV
Sbjct: 65  SERCYADYLSMFEQEARRADGIQAVSIATPNGTHYSITKAALEAGL--HVVCEKPLCFTV 122

Query: 114 ADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMV-AIREHRFPFLV 172
              + + + + K  + +V V   Y     + +  +++ +G +G V+MV     H F    
Sbjct: 123 EQAENLRELSHKH-NRIVGVTYGYAGHQLIEQAREMIAAGELGDVRMVHMQFAHGFHSAP 181

Query: 173 KVND----WNRFNENTGG---TLVEKCCHFFDLMRLFVGSNPM-RVMASGAVDVNHKDEM 224
                     R +    G    L +   H   L  + +    + R+M S           
Sbjct: 182 VEAQSQATQWRVDPRQAGPSYVLGDVGTHPLYLSEVMLPDLKIKRLMCSRQ--------S 233

Query: 225 YNGKVPDIIDNAYVIVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPES--I 282
           +      + DNAY ++E+E G+ GM+       GS + Q+I V+G+      +  E    
Sbjct: 234 FVASRAPLEDNAYTLMEYEGGAMGMVWSSAVNAGSMHGQKIRVIGSRA-SLEWWDERPNQ 292

Query: 283 VRFATREAGREDVQTLKAEDDRIEYEGLH-------HGSSYLE-----HLNFLSAIRAKG 330
           + F  +    +  Q L+     +    L        H     E     +  F  A+ A  
Sbjct: 293 LSFEVQG---QPAQILERGMGYLHPNALIDDRIGGGHPEGLFEAWANLYYRFALAMDATD 349

Query: 331 AKVPAVDLQDGLISVAIGVAAQLSIEK 357
                         +  GV     +E+
Sbjct: 350 RSDTQALSAVRYPGIDAGVEGVRWVER 376

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} Length = 318

 Score =  118 bits (297), Expect = 1e-30
 Identities = 44/274 (16%), Positives = 79/274 (28%), Gaps = 29/274 (10%)

Query: 8   KYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LKVFPG 65
            + +IG  G +   H   +    +  VS   I D        + +     ++        
Sbjct: 5   NFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHAS 64

Query: 66  HQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARK 125
           + +   +   D V + +PN  HY  +   +       V+ EKPL  T     ++    R+
Sbjct: 65  NLKRDSATALDYVSICSPNYLHYPHIAAGLRLGC--DVICEKPLVPTPEMLDQLAVIERE 122

Query: 126 RPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENTG 185
             D  +   L+ R+   +  L   V          V +          +  W      + 
Sbjct: 123 T-DKRLYNILQLRHHQAIIALKDKVAREKSPHKYEVDLTYITSRGNWYLKSWKGDPRKSF 181

Query: 186 GTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENG 245
           G       HF+D++    G     V+   +                        +E+E  
Sbjct: 182 GVATNIGVHFYDMLHFIFGKLQRNVVHFTSE-----------------YKTAGYLEYEQA 224

Query: 246 ------SRGMLDLCMFAEGSKNEQE-IVVVGNTG 272
                 S    DL    +G K     I V G   
Sbjct: 225 RVRWFLSVDANDLPESVKGKKPTYRSITVNGEEM 258

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} Length = 417

 Score =  116 bits (293), Expect = 1e-29
 Identities = 77/394 (19%), Positives = 137/394 (34%), Gaps = 58/394 (14%)

Query: 6   TVKYGIIGMGM---MGREHFINLHHL-RSQGVSVVCIADPHLQSRQQALKLANAFDWPL- 60
            ++ G++G G    +G  H I        + V+    + P     ++A            
Sbjct: 37  RIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTP-----EKAEASGRELGLDPS 91

Query: 61  KVFPGHQELLDSGLC-----DVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVAD 115
           +V+   +E+           + V + TPN  HY    + +      HV+ +KPL +T+AD
Sbjct: 92  RVYSDFKEMAIREAKLKNGIEAVAIVTPNHVHYAAAKEFLKRGI--HVICDKPLTSTLAD 149

Query: 116 CKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVN 175
            KK+  AA +  D L  +   Y   P V +  +++++G IG V++V +   +      + 
Sbjct: 150 AKKLKKAADES-DALFVLTHNYTGYPMVRQAREMIENGDIGAVRLVQMEYPQDWLTENIE 208

Query: 176 D-------WNRFNENTG--GTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYN 226
                   W      +G  G+  +   H ++L     G     + A         D    
Sbjct: 209 QSGQKQAAWRTDPARSGAGGSTGDIGTHAYNLGCFVSGLELEELAA---------DLDSF 259

Query: 227 GKVPDIIDNAYVIVEFENGS----RGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPES- 281
                + DNA+V++ F        +GML     A G +N   + V G  G G  +  +  
Sbjct: 260 VGGRQLDDNAHVLMRFREKDGTRAKGMLWCSQVAPGHENGLMVRVYGTKG-GLEWTQKDP 318

Query: 282 -IVRFATREAGREDVQTLKAEDDRIEYEGLH----HGSSYLE-----HLNFLSAIRAKGA 331
             + +      +  +    A               H   YLE     +     AI AK  
Sbjct: 319 NYLWYTPFGEPKRLLTRAGAGASPAAARVSRIPSGHPEGYLEGFANIYSEAARAIYAKRN 378

Query: 332 KVPAV------DLQDGLISVAIGVAAQLSIEKGR 359
              A        + DG+  +    A   S E+  
Sbjct: 379 GGKADPSVIYPTIDDGMRGMTFVDACVRSSERNG 412

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X Length = 334

 Score =  111 bits (281), Expect = 3e-28
 Identities = 64/344 (18%), Positives = 118/344 (34%), Gaps = 44/344 (12%)

Query: 6   TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPG 65
            +++GI+ +G++  +    L  L      VV +A    +   +A + A   D P K +  
Sbjct: 2   ALRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAA---RDLSRAKEFAQKHDIP-KAYGS 57

Query: 66  HQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARK 125
           ++EL      +V  V T +  H   +M  +   K   VL EKP+    A+ +++V  AR 
Sbjct: 58  YEELAKDPNVEVAYVGTQHPQHKAAVMLCLAAGK--AVLCEKPMGVNAAEVREMVTEARS 115

Query: 126 RPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENTG 185
           R  + +   +  R+ P    L  ++  G++G +++    E            +      G
Sbjct: 116 R-GLFLMEAIWTRFFPASEALRSVLAQGTLGDLRVARA-EFGKNLTHVPRAVDW--AQAG 171

Query: 186 GTLVEKCCHFFDL--------MRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAY 237
           G L        DL          +F G  P ++   G       D+              
Sbjct: 172 GAL-------LDLGIYCVQFISMVFGGQKPEKISVMGRRHETGVDD-----------TVT 213

Query: 238 VIVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQT 297
           V++++     G     + A+         V G   KG A +              E  + 
Sbjct: 214 VLLQYPGEVHGSFTCSITAQL---SNTASVSG--TKGMAQLLNPCWCPTELVVKGEHKEF 268

Query: 298 LKAEDDRIEYEGLHHGSSY-LEHLNFLSAIRAKGAKVPAVDLQD 340
           L     +        G SY  +H      +R    + P + L +
Sbjct: 269 LLPPVPKNCNFDNGAGMSYEAKH--VRECLRKGLKESPVIPLVE 310

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} Length = 330

 Score =  111 bits (279), Expect = 6e-28
 Identities = 56/343 (16%), Positives = 120/343 (34%), Gaps = 45/343 (13%)

Query: 3   ANDTVKYGIIGMGMMGREHFIN-LHHLRSQGVSVVCIADPHLQSR--QQALKLANAFDWP 59
           + D ++YGI+    +    F+  L    S    V  IA     SR  + A K+A     P
Sbjct: 2   SLDKIRYGIMSTAQIVPR-FVAGLRE--SAQAEVRGIA-----SRRLENAQKMAKELAIP 53

Query: 60  LKVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKV 119
              +  ++EL      D++ + T N  HY      ++  K   VL+EKP     A+ +++
Sbjct: 54  -VAYGSYEELCKDETIDIIYIPTYNQGHYSAAKLALSQGK--PVLLEKPFTLNAAEAEEL 110

Query: 120 VDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNR 179
              A+++  + +    +  ++P   K+   ++ G +G++  V      +P +  +     
Sbjct: 111 FAIAQEQ-GVFLMEAQKSVFLPITQKVKATIQEGGLGEILWVQS-VTAYPNVDHIP--WF 166

Query: 180 FNENT-GGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYV 238
           ++    GG L     +    ++  +G     V  +        D               +
Sbjct: 167 YSREAGGGALHGSGSYPLQYLQYVLGKEIQEVTGTATYQQGATDS-----------QCNL 215

Query: 239 IVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTL 298
            ++F  G+ G + + +  +      E+ + G   KG+  +P            + D    
Sbjct: 216 ALKFAEGTLGNIFINVGLKI---PSEMTICG--TKGQIVIPNFW---------KTDCAYY 261

Query: 299 KAEDDRIEYEGLHHGSSY-LEHLNFLSAIRAKGAKVPAVDLQD 340
                          S +  E  +    ++ K    P +  + 
Sbjct: 262 TDAQGNTVKWSEQFTSEFTYEINHVNQCLQDKKLTSPVMTKEL 304

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} Length = 329

 Score =  108 bits (273), Expect = 4e-27
 Identities = 51/282 (18%), Positives = 107/282 (37%), Gaps = 35/282 (12%)

Query: 3   ANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSR--QQALKLANAFDWPL 60
           +   V+YG++    +       +    +    VV ++     SR  + A   AN +  P 
Sbjct: 2   SLSKVRYGVVSTAKVAPRFIEGVRL--AGNGEVVAVS-----SRTLESAQAFANKYHLP- 53

Query: 61  KVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVV 120
           K +   +++L     DV+ V+T N  HY++    +   K  HVLVEKP   T     ++ 
Sbjct: 54  KAYDKLEDMLADESIDVIYVATINQDHYKVAKAALLAGK--HVLVEKPFTLTYDQANELF 111

Query: 121 DAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRF 180
             A    ++ +    +  ++P    + +++ SG IG+V  ++     +P    ++    F
Sbjct: 112 ALAESC-NLFLMEAQKSVFIPMTQVIKKLLASGEIGEVISISS-TTAYP---NIDHVTWF 166

Query: 181 NENT--GGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYV 238
            E    GGT+     +    ++    +       +             G+  D    + +
Sbjct: 167 RELELGGGTVHFMAPYALSYLQYLFDATITHASGTA--------TFPKGQS-DS--QSKL 215

Query: 239 IVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPE 280
           +++  NG    + L           E+++ G   +G   +P 
Sbjct: 216 LLQLSNGVLVDIFLTTRL---NLPHEMIIYG--TEGRLIIPH 252

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A Length = 362

 Score =  100 bits (252), Expect = 4e-24
 Identities = 66/367 (17%), Positives = 119/367 (32%), Gaps = 57/367 (15%)

Query: 2   AANDTVKYGIIGMGMMGREHFIN-LHHLRSQGVSVVCIADPHLQSR--QQALKLANAFDW 58
           A    ++ G++G   + R+     +H   +   ++  +A     SR  ++A   A A ++
Sbjct: 2   ATETQIRIGVMGCADIARK-VSRAIHL--APNATISGVA-----SRSLEKAKAFATANNY 53

Query: 59  P--LKVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADC 116
           P   K+   ++ LL+    D + V  P   H +  +      K  H+L+EKP+   V + 
Sbjct: 54  PESTKIHGSYESLLEDPEIDALYVPLPTSLHVEWAIKAAEKGK--HILLEKPVAMNVTEF 111

Query: 117 KKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVK-SGSIGQVKMVAIREHRFPFLVKVN 175
            K+VDA      + +  G  + + P  A L + +  S   GQ+K V      F       
Sbjct: 112 DKIVDACEAN-GVQIMDGTMWVHNPRTALLKEFLSDSERFGQLKTVQS-CFSFAGDEDFL 169

Query: 176 DWN-RFNENT--GGTLVEKCCHFFDL-------MRLFVGS-NPMRVMASGAVDVNHKDEM 224
             + R        G L        D          L      P  V A     +N     
Sbjct: 170 KNDIRVKPGLDGLGAL-------GDAGWYAIRATLLANNFELPKTVTAFPGAVLNE---- 218

Query: 225 YNGKVPDIIDNAYVIVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGE------AFV 278
                  +I +    + +E+G    +     A  +    EI  +G  G          + 
Sbjct: 219 -----AGVILSCGASLSWEDGRTATIYCSFLANLT---MEITAIGTKGTLRVHDFIIPYK 270

Query: 279 PESIVRFATREAGREDVQT---LKAEDDRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPA 335
                   + +A   D+ T       +  ++ E         E    +  I+  GAK   
Sbjct: 271 ETEASFTTSTKAWFNDLVTAWVSPPSEHTVKTELPQEACMVREFARLVGEIKNNGAKPDG 330

Query: 336 VDLQDGL 342
                  
Sbjct: 331 YWPSISR 337

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} Length = 304

 Score = 56.4 bits (136), Expect = 3e-09
 Identities = 18/134 (13%), Positives = 44/134 (32%), Gaps = 14/134 (10%)

Query: 1   MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL 60
           M  +  ++  I+G G +GR     L    +    +  I   +       L+       P 
Sbjct: 4   MTDDKKIRAAIVGYGNIGRYALQALRE--APDFEIAGIVRRNPAEVPFELQ-------PF 54

Query: 61  KVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVV 120
           +V    ++L      DV +V +P+    +  ++I+             +   +   ++ +
Sbjct: 55  RVVSDIEQLES---VDVALVCSPSREVERTALEILKKGI--CTADSFDIHDGILALRRSL 109

Query: 121 DAARKRPDILVQVG 134
             A  +      + 
Sbjct: 110 GDAAGKSGAAAVIA 123

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	376
4h3v_A	390	Oxidoreductase domain protein; structural genomics	100.0
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	100.0
4had_A	350	Probable oxidoreductase protein; structural genomi	100.0
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	100.0
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	100.0
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	100.0
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	100.0
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	100.0
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	100.0
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	100.0
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	100.0
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	100.0
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	100.0
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	100.0
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	100.0
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	100.0
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	100.0
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	100.0
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	100.0
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	100.0
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	100.0
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	100.0
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	100.0
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	100.0
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	100.0
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	100.0
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	100.0
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	100.0
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	100.0
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	100.0
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	100.0
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	100.0
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	100.0
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	100.0
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	100.0
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	100.0
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	100.0
1ydw_A	362	AX110P-like protein; structural genomics, protein	100.0
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	100.0
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	100.0
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	100.0
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	100.0
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	100.0
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	100.0
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	100.0
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	100.0
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	100.0
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	100.0
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	99.96
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	99.88
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	99.83
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	99.83
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	99.81
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	99.8
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	99.77
3a06_A	376	1-deoxy-D-xylulose 5-phosphate reductoisomerase; M	99.75
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	99.75
1r0k_A	388	1-deoxy-D-xylulose 5-phosphate reductoisomerase; N	99.73
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	99.73
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	99.72
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	99.66
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	99.65
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	99.55
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	99.51
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	99.37
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	99.32
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	99.31
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	99.3
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	99.28
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	99.21
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	99.2
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	99.17
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	99.15
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	99.09
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	99.08
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	99.07
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	99.02
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	98.96
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	98.95
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	98.95
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	98.9
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	98.81
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	98.79
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	98.78
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	98.78
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	98.73
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.68
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	98.67
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	98.67
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	98.65
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.65
2duw_A	145	Putative COA-binding protein; ligand binding prote	98.61
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	98.61
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	98.61
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	98.61
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	98.61
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	98.58
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	98.58
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	98.57
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	98.57
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.56
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	98.55
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	98.53
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	98.53
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	98.52
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	98.52
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	98.5
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	98.5
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	98.5
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	98.48
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	98.48
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	98.46
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	98.46
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	98.44
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	98.42
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	98.41
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.41
3qha_A	296	Putative oxidoreductase; seattle structural genomi	98.4
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	98.38
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	98.37
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	98.35
4ezb_A	317	Uncharacterized conserved protein; structural geno	98.33
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	98.33
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	98.32
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	98.31
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	98.29
3nkl_A	141	UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo	98.26
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	98.25
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	98.22
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	98.19
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	98.19
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	98.19
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	98.17
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	98.17
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	98.14
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	98.14
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	98.13
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	98.13
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	98.12
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.1
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	98.1
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	98.05
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.02
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	97.99
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	97.99
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	97.99
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	97.99
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	97.99
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	97.96
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	97.95
2y1e_A	398	1-deoxy-D-xylulose 5-phosphate reductoisomerase; o	97.93
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	97.9
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	97.89
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	97.89
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	97.88
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	97.88
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	97.86
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	97.82
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.82
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	97.8
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	97.77
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	97.76
1q0q_A	406	1-deoxy-D-xylulose 5-phosphate reductoisomerase; o	97.75
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	97.74
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	97.73
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	97.73
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	97.73
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	97.72
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	97.7
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	97.69
3au8_A	488	1-deoxy-D-xylulose 5-phosphate reductoisomerase; N	97.65
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	97.64
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	97.61
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	97.6
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	97.59
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	97.57
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	97.57
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	97.56
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	97.55
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	97.53
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	97.52
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	97.5
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	97.5
2csu_A	457	457AA long hypothetical protein; structural genomi	97.5
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.48
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	97.47
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	97.45
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	97.44
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.43
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	97.4
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	97.4
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	97.39
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	97.34
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	97.34
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	97.33
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.31
3mwd_B	334	ATP-citrate synthase; ATP-grAsp, phosphohistidine,	97.31
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	97.31
2obn_A	349	Hypothetical protein; structural genomics, joint c	97.28
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	97.28
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	97.27
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	97.25
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.21
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	97.21
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	97.21
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	97.2
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	97.2
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	97.19
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	97.16
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	97.15
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	97.15
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	97.14
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	97.13
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	97.12
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	97.1
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	97.1
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	97.1
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.1
2ep7_A	342	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; o	97.1
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	97.1
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	97.1
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	97.1
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	97.1
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	97.08
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	97.08
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	97.08
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	97.06
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.06
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	97.01
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	96.99
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.98
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	96.96
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	96.96
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	96.95
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	96.94
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	96.92
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	96.91
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	96.91
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	96.9
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	96.9
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	96.88
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	96.88
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	96.86
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	96.86
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.85
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	96.83
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	96.82
1vm6_A	228	DHPR, dihydrodipicolinate reductase; TM1520, struc	96.82
2g0t_A	350	Conserved hypothetical protein; structural genomic	96.8
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	96.79
1obf_O	335	Glyceraldehyde 3-phosphate dehydrogenase; glycolyt	96.78
2g82_O	331	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G	96.75
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	96.75
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	96.75
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	96.74
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	96.73
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	96.73
2b4r_O	345	Glyceraldehyde-3-phosphate dehydrogenase; SGPP, st	96.72
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	96.71
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	96.7
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	96.67
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	95.69
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	96.64
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	96.62
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	96.62
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	96.61
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	96.61
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	96.59
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	96.59
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	96.59
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	96.59
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	96.58
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	96.56
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	96.55
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	96.51
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	96.51
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	96.5
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	96.49
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	96.48
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	96.47
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	96.46
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	96.46
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	96.45
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	96.45
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	96.44
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	96.42
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	96.4
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	96.37
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	96.37
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	96.37
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	96.35
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	96.35
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	96.35
3q0i_A	318	Methionyl-tRNA formyltransferase; structural genom	96.33
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	96.33
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	96.31
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	96.31
3da8_A	215	Probable 5'-phosphoribosylglycinamide formyltransf	96.31
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	96.28
3auf_A	229	Glycinamide ribonucleotide transformylase 1; struc	96.24
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	96.22
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	96.21
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.2
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.19
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	96.19
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	96.18
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.18
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	96.17
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	96.17
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	96.17
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	96.16
3v1y_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	96.11
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	96.11
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	96.08
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	96.06
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	96.04
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.04
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	95.96
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	95.94
3pym_A	332	GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase	95.94
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	95.94
4g65_A	461	TRK system potassium uptake protein TRKA; structur	95.93
3lvf_P	338	GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase	95.93
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	95.93
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	95.9
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	95.9
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	95.9
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	95.9
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	95.9
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	95.88
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	95.86
4dib_A	345	GAPDH, glyceraldehyde 3-phosphate dehydrogenase; n	95.8
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	95.78
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	95.77
3doc_A	335	Glyceraldehyde 3-phosphate dehydrogenase; ssgcid,	95.77
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	95.77
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	95.76
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	95.73
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	95.73
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	95.73
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	95.72
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	95.71
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	95.69
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	95.67
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	95.66
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	95.65
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	95.65
1fmt_A	314	Methionyl-tRNA FMet formyltransferase; initiator t	95.64
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	95.64
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	95.64
2ywr_A	216	Phosphoribosylglycinamide formyltransferase; rossm	95.63
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	95.63
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	95.61
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	95.61
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	95.6
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	95.55
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	95.55
3tl2_A	315	Malate dehydrogenase; center for structural genomi	95.54
3av3_A	212	Phosphoribosylglycinamide formyltransferase; struc	95.53
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	95.51
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	95.47
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	95.43
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	95.42
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	95.42
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	95.35
3tqq_A	314	Methionyl-tRNA formyltransferase; protein synthesi	95.34
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	95.34
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	95.33
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	95.29
3rfo_A	317	Methionyl-tRNA formyltransferase; structural genom	95.2
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	95.18
3tqr_A	215	Phosphoribosylglycinamide formyltransferase; purin	95.17
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	95.15
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	95.1
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	95.08
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	95.04
3kcq_A	215	Phosphoribosylglycinamide formyltransferase; struc	95.03
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	95.02
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	95.02
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	94.98
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	94.93
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	94.92
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	94.92
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	94.89
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	94.88
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	94.87
3ids_C	359	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, g	94.83
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	94.82
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	94.81
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	94.75
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	94.74
2bw0_A	329	10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase	94.73
3pff_A	829	ATP-citrate synthase; phosphohistidine, organic ac	94.72
4ds3_A	209	Phosphoribosylglycinamide formyltransferase; struc	94.66
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	94.63
3gms_A	340	Putative NADPH:quinone reductase; structural genom	94.63
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	94.61
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	94.59
2bln_A	305	Protein YFBG; transferase, formyltransferase, L-AR	94.54
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	94.5
4eye_A	342	Probable oxidoreductase; structural genomics, niai	94.48
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	94.46
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	94.4
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	94.35
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	94.34
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	94.29
1gr0_A	367	Inositol-3-phosphate synthase; isomerase, oxidored	94.28
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	94.28
3p9x_A	211	Phosphoribosylglycinamide formyltransferase; struc	94.24
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	94.22
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	94.19
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	94.16
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	94.15
3nvt_A	385	3-deoxy-D-arabino-heptulosonate 7-phosphate synth;	94.09
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	94.07
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	94.05
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	94.01
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	93.99
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	93.96
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	93.93
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	93.92
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	93.88
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	93.79
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	93.77
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	93.75
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	93.74
2yv3_A	331	Aspartate-semialdehyde dehydrogenase; aspartate pa	93.73
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	93.7
3fs2_A	298	2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid,	93.69
1zco_A	262	2-dehydro-3-deoxyphosphoheptonate aldolase; arabin	93.69
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	93.68
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	93.66
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	93.6
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	93.57
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	93.55
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	93.53
3gd5_A	323	Otcase, ornithine carbamoyltransferase; structural	93.53
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	93.48
1vli_A	385	Spore coat polysaccharide biosynthesis protein SP;	93.48
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	93.4
2bh9_A	489	G6PD, glucose-6-phosphate 1-dehydrogenase; oxidore	93.38
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	93.37
3sz8_A	285	2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgci	93.29
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	93.26
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	93.22
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	93.19
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	93.16
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	93.15
1dpg_A	485	G6PD, glucose 6-phosphate dehydrogenase; oxidoredu	93.04
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	93.0
3dmy_A	480	Protein FDRA; predicted actyl-COA synthetase, nysg	92.99
4ep1_A	340	Otcase, ornithine carbamoyltransferase; structural	92.97
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	92.94
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	92.89
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	92.85
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	92.85
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	92.85
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	92.81
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	92.79
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	92.75
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	92.73
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	92.73
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	92.71
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	92.68
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	92.67
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	92.63
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	92.62
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	92.51
1jkx_A	212	GART;, phosphoribosylglycinamide formyltransferase	92.45
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	92.38
1vs1_A	276	3-deoxy-7-phosphoheptulonate synthase; (beta/alpha	92.35
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	92.29
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	92.17
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	92.15
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	92.09
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	92.08
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	92.08
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	92.07
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	91.94
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	91.9
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	91.84
3hja_A	356	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; n	91.83
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	91.75
1lnq_A	336	MTHK channels, potassium channel related protein;	91.67
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	91.66
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	91.66
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	91.6
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	91.51
3tpf_A	307	Otcase, ornithine carbamoyltransferase; structural	91.44
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	91.42
1duv_G	333	Octase-1, ornithine transcarbamoylase; enzyme-inhi	91.41
2w37_A	359	Ornithine carbamoyltransferase, catabolic; transca	91.25
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	91.24
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	91.21
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	91.18
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	91.1
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	91.09
2wqp_A	349	Polysialic acid capsule biosynthesis protein SIAC;	91.04
1qv9_A	283	F420-dependent methylenetetrahydromethanopterin de	91.03
1meo_A	209	Phosophoribosylglycinamide formyltransferase; puri	91.02

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=100.00  E-value=1.7e-62  Score=466.40  Aligned_cols=354  Identities=22%  Similarity=0.285  Sum_probs=281.5

Q ss_pred             CCCceeEEEEeCChhhHHHHHHhhhhcC-----CCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCE
Q 017143            3 ANDTVKYGIIGMGMMGREHFINLHHLRS-----QGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDV   77 (376)
Q Consensus         3 ~~~~~~v~iiG~G~~g~~~~~~~~~~~~-----~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~   77 (376)
                      +|+++||||||+|.+|+.|+++++.++.     .+.+|++|||++++   ++++++++||++ +.|+|+++||+++++|+
T Consensus         3 ~M~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~---~a~~~a~~~g~~-~~~~d~~~ll~~~~iDa   78 (390)
T 4h3v_A            3 AMTNLGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAE---AVRAAAGKLGWS-TTETDWRTLLERDDVQL   78 (390)
T ss_dssp             -CCEEEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHH---HHHHHHHHHTCS-EEESCHHHHTTCTTCSE
T ss_pred             CCCcCcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHH---HHHHHHHHcCCC-cccCCHHHHhcCCCCCE
Confidence            4678999999999999999999988720     13499999999998   788899999997 89999999999999999


Q ss_pred             EEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHH---HHhCCCeEEEEeeccccCHHHHHHHHHHHcCC
Q 017143           78 VVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDA---ARKRPDILVQVGLEYRYMPPVAKLIQIVKSGS  154 (376)
Q Consensus        78 V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~---a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~  154 (376)
                      |+||||+..|++++++||+  +|||||||||++.|++|+++|.++   + +++|+.+++++++||+|.++.+|++|++|.
T Consensus        79 V~I~tP~~~H~~~~~~al~--aGkhVl~EKPla~t~~ea~~l~~~~~~~-~~~g~~~~v~~~~R~~p~~~~~k~~i~~g~  155 (390)
T 4h3v_A           79 VDVCTPGDSHAEIAIAALE--AGKHVLCEKPLANTVAEAEAMAAAAAKA-AAGGIRSMVGFTYRRVPAIALARKLVADGK  155 (390)
T ss_dssp             EEECSCGGGHHHHHHHHHH--TTCEEEEESSSCSSHHHHHHHHHHHHHH-HHTTCCEEEECGGGGSHHHHHHHHHHHTTS
T ss_pred             EEEeCChHHHHHHHHHHHH--cCCCceeecCcccchhHHHHHHHHHHHH-HhcCCceEEEeeeccCchHHHHHHHHHcCC
Confidence            9999999999999999999  999999999999999999999665   6 346999999999999999999999999999


Q ss_pred             CCceEEEEEeeccC--CcccccCccccccc-cCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCccc-------
Q 017143          155 IGQVKMVAIREHRF--PFLVKVNDWNRFNE-NTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEM-------  224 (376)
Q Consensus       155 iG~i~~~~~~~~~~--~~~~~~~~w~~~~~-~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~-------  224 (376)
                      ||+|+.+++.+...  .....+.+|+.++. .|||+++|+|+|.+|+++||+|.+|++|+|...+........       
T Consensus       156 iG~i~~v~~~~~~~~~~~~~~~~~wr~~~~~~GgG~l~d~g~H~iD~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~  235 (390)
T 4h3v_A          156 IGTVRHVRAQYLQDWIADPEAPLSWRLDKDKAGSGALGDIGAHIVDLTQFITGDRIAEVSGRLETFVKERPKPEAHSGLS  235 (390)
T ss_dssp             SCSEEEEEEEEECCTTCSTTSCCCGGGCHHHHSCSHHHHTHHHHHHHHHHHHSCCEEEEEEEEECSCCEEECTTCCCCC-
T ss_pred             CCcceeeEEEEeeeccCCCCCCccccccccccCCcchhhhHHHHHHHHHHHhCCCceEEEEEEEeecccCCccccccccc
Confidence            99999999865432  22334567877655 578999999999999999999988999999876543221110       


Q ss_pred             ----cCCCCCcccccEEEEEEecCCcEEEEEEEEeecCCCCceEEEEEecCCeeeeecccce-eeeecccC--CccceEE
Q 017143          225 ----YNGKVPDIIDNAYVIVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESI-VRFATREA--GREDVQT  297 (376)
Q Consensus       225 ----~~~~~~~~~d~~~~~l~~~~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~~-~~~~~~~~--~~~~~~~  297 (376)
                          ......+++|.+.++++|+||.++++..++...+.....+++|+|++|++.++..... +.+.....  ...+...
T Consensus       236 ~~~~~~~~~~~vdd~~~~~~~~~~G~~~~~~~s~~~~~~~~~~~~~i~G~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (390)
T 4h3v_A          236 GTASAERGPVTVDDAAVFLATFRGGALGVFEATRFATGRKNAIRIEINGSKGSLAFDFEDMNLLHFYDATEDPETAGFRR  315 (390)
T ss_dssp             -CCGGGEEECCSCSEEEEEEEETTSCEEEEEEESCCTTCSSEEEEEEEESSEEEEEEGGGTTEEEEEETTSCTTTCCEEE
T ss_pred             ccccccccccccccceeeEEecCCCcEEeeeeeccccCCCCcceeEEEcceEEEEEecCCCceEEEecCCCCcccccccc
Confidence                0011246889999999999999999999888777767778999999999998764332 22221111  1112222


Q ss_pred             eeccCccccc-c--------CCCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCEEEehh
Q 017143          298 LKAEDDRIEY-E--------GLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAIEE  365 (376)
Q Consensus       298 ~~~~~~~~~~-~--------~~~~~~~~~~l~~f~~~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~g~~v~~~~  365 (376)
                      .....+.... .        ....+.+..++++|+++|+  ++.++.++++|++++++|++|+++|+++|++|+|||
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ai~--~g~~~~~~~~dal~~~~i~~A~~~Sa~~g~~V~vpe  390 (390)
T 4h3v_A          316 ILATEPVHPYVAGWWPPGHLLGYEHGFTHQVVDLVTAIA--EGKDPEPSFADGLQVQRVLAAVETSSTSRQWQEIPE  390 (390)
T ss_dssp             EESCSTTSTTGGGSCCTTCCCCTTHHHHHHHHHHHHHHH--HTCCCSSCHHHHHHHHHHHHHHHHHHHHTBCEECCC
T ss_pred             ccccCccccccccccCCCcccchhHHHHHHHHHHHHHHH--cCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCeECcC
Confidence            2111111100 0        0112345578999999999  667788999999999999999999999999999986

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=100.00  E-value=8.3e-62  Score=464.34  Aligned_cols=353  Identities=20%  Similarity=0.241  Sum_probs=280.4

Q ss_pred             CCCceeEEEEeCChhhHHHHHHhhhhc------CCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCC
Q 017143            3 ANDTVKYGIIGMGMMGREHFINLHHLR------SQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCD   76 (376)
Q Consensus         3 ~~~~~~v~iiG~G~~g~~~~~~~~~~~------~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D   76 (376)
                      |++||||||||+|++|+.|++++++..      .++++|+||||++++   ++++++++||++ +.|+|+++||+++++|
T Consensus        23 Ms~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~---~a~~~a~~~~~~-~~y~d~~~ll~~~~vD   98 (412)
T 4gqa_A           23 MSARLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQA---MAERHAAKLGAE-KAYGDWRELVNDPQVD   98 (412)
T ss_dssp             --CEEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHH---HHHHHHHHHTCS-EEESSHHHHHHCTTCC
T ss_pred             ccccceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHH---HHHHHHHHcCCC-eEECCHHHHhcCCCCC
Confidence            345899999999999999999998762      247899999999998   788899999986 8999999999999999


Q ss_pred             EEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCC
Q 017143           77 VVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIG  156 (376)
Q Consensus        77 ~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG  156 (376)
                      +|+||||+..|++++++||+  +|||||||||++.|++|+++|+++|+ ++|+.+++++++||.|.++++|++|++|.||
T Consensus        99 ~V~I~tp~~~H~~~~~~al~--aGkhVl~EKP~a~~~~ea~~l~~~a~-~~g~~~~v~~~~R~~p~~~~~k~~i~~G~iG  175 (412)
T 4gqa_A           99 VVDITSPNHLHYTMAMAAIA--AGKHVYCEKPLAVNEQQAQEMAQAAR-RAGVKTMVAFNNIKTPAALLAKQIIARGDIG  175 (412)
T ss_dssp             EEEECSCGGGHHHHHHHHHH--TTCEEEEESCSCSSHHHHHHHHHHHH-HHTCCEEEECGGGTSHHHHHHHHHHHHTTTC
T ss_pred             EEEECCCcHHHHHHHHHHHH--cCCCeEeecCCcCCHHHHHHHHHHHH-HhCCeeeeccceecCHHHHHHHHHHhcCCcC
Confidence            99999999999999999999  99999999999999999999999995 5599999999999999999999999999999


Q ss_pred             ceEEEEEeeccC--CcccccCccccccc-cCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCcc----------
Q 017143          157 QVKMVAIREHRF--PFLVKVNDWNRFNE-NTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDE----------  223 (376)
Q Consensus       157 ~i~~~~~~~~~~--~~~~~~~~w~~~~~-~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~----------  223 (376)
                      +|+.++..+...  .....+.+|+.++. .+||+++|+|+|.+|+++||+| +|.+|++...+.......          
T Consensus       176 ~i~~~~~~~~~~~~~~~~~~~~wr~~~~~~GgG~l~d~g~H~iD~~~~l~G-~~~~V~a~~~~~~~~r~~~~~~~~~~~~  254 (412)
T 4gqa_A          176 EPVRFRGTFDQGFYNDPNLPWSWRCSKTLGGSGALGDLGAHTLSVAQFLLG-GIREVTASAQTCLRQRPVPQRDAGYASR  254 (412)
T ss_dssp             SEEEEEEEEECCSTTSTTSCCCGGGCTTTTCCSHHHHTHHHHHHHHHHHHC-CEEEEEEEEECCSCEEECC---------
T ss_pred             CeEEEEEEeccccccCCCCCccceeccccCCCcchhhhhhhHHHHHHHHhC-CCeEEEEEEEeccccccccccccccccc
Confidence            999999865443  22334567877665 4679999999999999999999 799999987654322110          


Q ss_pred             ---ccCCCCCcccccEEEEEEecCCcEEEEEEEEeecCCCCceEEEEEecCCeeeeeccc-ceeeeecccC--CccceEE
Q 017143          224 ---MYNGKVPDIIDNAYVIVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPE-SIVRFATREA--GREDVQT  297 (376)
Q Consensus       224 ---~~~~~~~~~~d~~~~~l~~~~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~-~~~~~~~~~~--~~~~~~~  297 (376)
                         .......+++|++.++++|+||.++++..++...+.....+++|+|++|++.++... ..+.......  ...+...
T Consensus       255 ~~~~~~~~~~~~eD~~~~~l~f~~G~~~~~~~s~~~~~~~~~~~~~i~Gt~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~  334 (412)
T 4gqa_A          255 VAADAEWREVENDDQVQCLVNFDSGAAGVIEASRIAAGRIFGVFWEVSGTEGTLYMDGERFNELQVYRFNDDKHDRGFKT  334 (412)
T ss_dssp             ---CCCEEECCSCSEEEEEEEETTSCEEEEEEESCCTTCSSEEEEEEEETTEEEEEEGGGTTEEEEEETTSCGGGCCEEE
T ss_pred             ccccccccccccceEEEEEEEeCCCcEEEEEEEeeecCCCCceEEEEEeCeEEEEEeccCCceEEEEecCCCccccceee
Confidence               000112467899999999999999999999887776677789999999999987533 2222221111  1112222


Q ss_pred             eeccCcccccc--------CCC---CCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCEEEehh
Q 017143          298 LKAEDDRIEYE--------GLH---HGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAIEE  365 (376)
Q Consensus       298 ~~~~~~~~~~~--------~~~---~~~~~~~l~~f~~~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~g~~v~~~~  365 (376)
                      +........+.        +..   .+.+..++++|+++|+  ++.++.++++|++++++|++|+++|+++|+||+|++
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~f~~ai~--~g~~~~~~~~dal~~~~v~~Ai~~Sa~~g~~V~v~~  411 (412)
T 4gqa_A          335 LYAGSQIPAYAGFFGFDFGGGGLGYFDVKVIEVHDLVQGIC--GDDDCYPNFEFGLQNQRVLSAIEASMVSRRWVNVVK  411 (412)
T ss_dssp             EECBTTSGGGGGTCCCSSCBCCCCHHHHHHHHHHHHHHHHS--SSSCCSSCHHHHHHHHHHHHHHHHHHHHCSCEECCC
T ss_pred             eccCCcCCcccccccccCcccccchhhHHHHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHHHHHHHcCCceECCC
Confidence            22111110000        000   1123467899999998  777888999999999999999999999999999974

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=100.00  E-value=5.3e-62  Score=456.24  Aligned_cols=327  Identities=22%  Similarity=0.289  Sum_probs=257.1

Q ss_pred             CCceeEEEEeCChhhHH-HHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeC
Q 017143            4 NDTVKYGIIGMGMMGRE-HFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~-~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t   82 (376)
                      ++||||||||+|.||+. |++.++..  ++++|+||||++++   ++++++++||++ +.|+|+++||+++++|+|+|||
T Consensus        21 ~~mirigiIG~G~ig~~~~~~~~~~~--~~~~lvav~d~~~~---~a~~~a~~~g~~-~~y~d~~ell~~~~iDaV~I~t   94 (350)
T 4had_A           21 QSMLRFGIISTAKIGRDNVVPAIQDA--ENCVVTAIASRDLT---RAREMADRFSVP-HAFGSYEEMLASDVIDAVYIPL   94 (350)
T ss_dssp             -CCEEEEEESCCHHHHHTHHHHHHHC--SSEEEEEEECSSHH---HHHHHHHHHTCS-EEESSHHHHHHCSSCSEEEECS
T ss_pred             cCccEEEEEcChHHHHHHHHHHHHhC--CCeEEEEEECCCHH---HHHHHHHHcCCC-eeeCCHHHHhcCCCCCEEEEeC
Confidence            45799999999999986 57888888  89999999999998   788999999997 8999999999999999999999


Q ss_pred             CCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEEE
Q 017143           83 PNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVA  162 (376)
Q Consensus        83 ~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~~  162 (376)
                      |+..|++++++||+  +|||||||||++.|++|+++|+++| +++|+.+++++++||.|.++++|++|++|.||+|+.++
T Consensus        95 P~~~H~~~~~~al~--aGkhVl~EKPla~~~~ea~~l~~~a-~~~~~~l~v~~~~R~~p~~~~~k~~i~~G~iG~i~~i~  171 (350)
T 4had_A           95 PTSQHIEWSIKAAD--AGKHVVCEKPLALKAGDIDAVIAAR-DRNKVVVTEAYMITYSPVWQKVRSLIDEGAIGSLRHVQ  171 (350)
T ss_dssp             CGGGHHHHHHHHHH--TTCEEEECSCCCSSGGGGHHHHHHH-HHHTCCEEECCGGGGSHHHHHHHHHHHTTTTSSEEEEE
T ss_pred             CCchhHHHHHHHHh--cCCEEEEeCCcccchhhHHHHHHHH-HHcCCceeEeeeeecCHHHHHhhHhhhcCCCCcceeee
Confidence            99999999999999  9999999999999999999999999 45599999999999999999999999999999999998


Q ss_pred             EeeccCCcccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCccccCCCCCcccccEEEEEEe
Q 017143          163 IREHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEF  242 (376)
Q Consensus       163 ~~~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~  242 (376)
                      +.+....  ..+.+|+.+...+||+++|+|+|.+|+++||+|.+|++|++......          ..+++|.+.++++|
T Consensus       172 ~~~~~~~--~~~~~~~~~~~~gGG~l~d~g~H~id~~~~l~G~~~~~V~a~~~~~~----------~~~~d~~~~~~l~~  239 (350)
T 4had_A          172 GAFTYFN--RDASNMRNIPELGGGGLPDIGVYPVMSTRFSTGKEPLRIQANTERDP----------DFGTDIYSSVKADF  239 (350)
T ss_dssp             EEEEEEC--CCC------------CCHHHHHHHHHHHHHHHCCCCSEEEEEEEECT----------TTCCEEEEEEEEEC
T ss_pred             EEEeecc--cccccccCChhhcCCcccCCceehhHHHHHHcCCCceEEEEEEEEcC----------CCCceEEEEEEEEE
Confidence            8654322  23456767777899999999999999999999988999999865432          12578999999999


Q ss_pred             cCCcEEEEEEEEeecCCCCceEEEEEecCCeeeeecccceeeeecccCCccceEEeec--cCccccccCCCCCCCHHHHH
Q 017143          243 ENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKA--EDDRIEYEGLHHGSSYLEHL  320 (376)
Q Consensus       243 ~~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~  320 (376)
                      +||.++.+...+.    ....+++|+|++|+|+++.+......     ... ...+..  ............+.+..+++
T Consensus       240 ~~g~~~~~~~~~~----~~~~~~~i~G~~G~i~i~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (350)
T 4had_A          240 DDFELSFYVSTQM----ANRQIMVFHGTNGYIEVKSPFNANRW-----GPE-EIELADRSHNESRIFRFQDSRQYRREVE  309 (350)
T ss_dssp             SSCEEEEEEESEE----EEEEEEEEEESSCEEEESSTTTGGGT-----SCC-EEEEECSSSSEEEEEECTTCCHHHHHHH
T ss_pred             CCEEEEEEEecCC----CCCcccccccCceEEEEccccccccC-----Ccc-eEEEecCCCCceeEeecCCChHHHHHHH
Confidence            9998776543322    23457999999999998643211110     000 000000  00111111122345678899


Q ss_pred             HHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCEEEe
Q 017143          321 NFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAI  363 (376)
Q Consensus       321 ~f~~~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~g~~v~~  363 (376)
                      +|+++|+  ++.++.++++|++++++|++|+++|+++|+||.+
T Consensus       310 ~F~~~i~--~g~~~~~~~~dal~~~~iieai~~Sa~~g~wv~V  350 (350)
T 4had_A          310 AFARAVE--NGKEEVVTLENSKLNQKVIDAIYRASEKDGWEAV  350 (350)
T ss_dssp             HHHHHHH--HSCSCCCCHHHHHHHHHHHHHHHHHTTSSSCEEC
T ss_pred             HHHHHHH--cCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCC
Confidence            9999999  5677889999999999999999999999999975

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=100.00  E-value=3e-61  Score=458.28  Aligned_cols=353  Identities=20%  Similarity=0.264  Sum_probs=275.7

Q ss_pred             CCCCCceeEEEEeCChhhHHHHHHhhhhc-----CCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCC
Q 017143            1 MAANDTVKYGIIGMGMMGREHFINLHHLR-----SQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLC   75 (376)
Q Consensus         1 m~~~~~~~v~iiG~G~~g~~~~~~~~~~~-----~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   75 (376)
                      |+.|+|+||||||+|++|+.|++++..+.     .++++|+||||++++   ++++++++||++ +.|+|+++||+++++
T Consensus        20 ~~~MkkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~---~a~~~a~~~g~~-~~y~d~~ell~~~~i   95 (393)
T 4fb5_A           20 FQSMKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAG---LAEARAGEFGFE-KATADWRALIADPEV   95 (393)
T ss_dssp             ----CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--T---THHHHHHHHTCS-EEESCHHHHHHCTTC
T ss_pred             ccCCCCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHH---HHHHHHHHhCCC-eecCCHHHHhcCCCC
Confidence            46788999999999999999999887652     267899999999998   678889999997 899999999999999


Q ss_pred             CEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCC
Q 017143           76 DVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSI  155 (376)
Q Consensus        76 D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~i  155 (376)
                      |+|+||||+..|++++++||+  +|||||||||++.|++|+++|+++++ ++|+.+++++++||+|.++++|++|++|.|
T Consensus        96 DaV~IatP~~~H~~~a~~al~--aGkhVl~EKPla~~~~ea~~l~~~a~-~~g~~l~vg~~~R~~p~~~~~k~~i~~G~i  172 (393)
T 4fb5_A           96 DVVSVTTPNQFHAEMAIAALE--AGKHVWCEKPMAPAYADAERMLATAE-RSGKVAALGYNYIQNPVMRHIRKLVGDGVI  172 (393)
T ss_dssp             CEEEECSCGGGHHHHHHHHHH--TTCEEEECSCSCSSHHHHHHHHHHHH-HSSSCEEECCGGGGCHHHHHHHHHHHTTTT
T ss_pred             cEEEECCChHHHHHHHHHHHh--cCCeEEEccCCcccHHHHHHhhhhHH-hcCCccccccccccChHHHHHHHHHHcCCC
Confidence            999999999999999999999  99999999999999999999999994 559999999999999999999999999999


Q ss_pred             CceEEEEEeeccCCc--ccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCcc-ccCCCCCcc
Q 017143          156 GQVKMVAIREHRFPF--LVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDE-MYNGKVPDI  232 (376)
Q Consensus       156 G~i~~~~~~~~~~~~--~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~-~~~~~~~~~  232 (376)
                      |+|..+++.+.....  ......|+.....+||+++|+|+|.+|+++||+| +|.+|++...+....... .......+.
T Consensus       173 G~i~~v~~~~~~~~~~~~~~~~~~~~~~~~ggG~l~d~g~H~iD~~~~l~G-~~~~v~a~~~~~~~~~~~~~~~~~~~~~  251 (393)
T 4fb5_A          173 GRVNHVRVEMDEDFMADPDIFFYWKSELSAGYGALDDFAVHPLSLLWYLFG-HVEAVITDMVKPYPDRPLSEGGRRAVEN  251 (393)
T ss_dssp             CSEEEEEEEEECCTTTCTTSCCCGGGCGGGCCBHHHHTTHHHHHHHHHHTC-CEEEEEEEEECCCSEEECTTSSEEECCS
T ss_pred             ccccceeeeeccccCCCccccccccccccCCCceecceeeehHHHHHHhcC-CCeEEEEEeeecccCcccccCCcccccc
Confidence            999999986544322  2223455555667899999999999999999999 799998876553222111 011123467


Q ss_pred             cccEEEEEEecCCcEEEEEEEEeecCCCCceEEEEEecCCeeeeecccce-eeeecc--cCCccceEEeeccCcccc---
Q 017143          233 IDNAYVIVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESI-VRFATR--EAGREDVQTLKAEDDRIE---  306 (376)
Q Consensus       233 ~d~~~~~l~~~~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~---  306 (376)
                      +|...+.++|++|..+++..++...+.....+++|+|++|++.++..... +.....  .....+.......+....   
T Consensus       252 ~~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~i~G~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (393)
T 4fb5_A          252 HDAANVLMRLDGGISAVLMANRAAWGRKGRIALQIYGSKGSILYDQERMNEFELYQAEGPGSEQGFRKILAAPAHRPYDR  331 (393)
T ss_dssp             BSEEEEEEEEGGGCEEEEEEESCCTTCSSEEEEEEEESSEEEEEEGGGTTEEEEEESCSCGGGCCCEEEECCTTSTTHHH
T ss_pred             cccceeeeecCCCeEEEEEEEeeeccCCCceEEEEEeeeeEEEeccCCcceEEEeccCCCcccccceeeccccccccccc
Confidence            78999999999999999998887777667778999999999988754322 111111  111112222211111100   


Q ss_pred             ---ccC---CCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCEEEe
Q 017143          307 ---YEG---LHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAI  363 (376)
Q Consensus       307 ---~~~---~~~~~~~~~l~~f~~~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~g~~v~~  363 (376)
                         ..+   ...+.+..++++|+++|+  ++.++.++++|++++++|++|+++|+++|++|+|
T Consensus       332 ~~~~~~~~~g~~~~~~~e~~~f~~~i~--~~~~~~~~~~d~l~~~~i~~A~~~Sa~~gr~V~l  392 (393)
T 4fb5_A          332 FIPAPGHGLGFNDLKIIECRELIRAIT--GEPSSIVTFKDGLRIEKSVHAMAQSFHERRWIEI  392 (393)
T ss_dssp             HCSSTTSCCCTTHHHHHHHHHHHHHHH--CSCCCCCBHHHHHHHHHHHHHHHHHHHTTSCEEC
T ss_pred             ccccCCcccchhHHHHHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHHHHHHHcCCEEeC
Confidence               001   112334578999999998  7788889999999999999999999999999987

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=100.00  E-value=5.8e-58  Score=429.30  Aligned_cols=338  Identities=19%  Similarity=0.200  Sum_probs=268.6

Q ss_pred             CCCCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEE
Q 017143            1 MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         1 m~~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      |+ |+++||||||+|.+|+.|++.+.+.  ++++|++|||+++++   ++ .++++|++  .|+|++++++++++|+|+|
T Consensus         1 M~-m~~~~vgiiG~G~~g~~~~~~l~~~--~~~~l~av~d~~~~~---~~-~a~~~g~~--~~~~~~~ll~~~~~D~V~i   71 (359)
T 3e18_A            1 MS-LKKYQLVIVGYGGMGSYHVTLASAA--DNLEVHGVFDILAEK---RE-AAAQKGLK--IYESYEAVLADEKVDAVLI   71 (359)
T ss_dssp             ---CCCEEEEEECCSHHHHHHHHHHHTS--TTEEEEEEECSSHHH---HH-HHHTTTCC--BCSCHHHHHHCTTCCEEEE
T ss_pred             CC-CCcCcEEEECcCHHHHHHHHHHHhC--CCcEEEEEEcCCHHH---HH-HHHhcCCc--eeCCHHHHhcCCCCCEEEE
Confidence            55 4579999999999999999999988  899999999999874   33 45678875  8999999999989999999


Q ss_pred             eCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEE
Q 017143           81 STPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKM  160 (376)
Q Consensus        81 ~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~  160 (376)
                      |||+..|++++++||+  +||||+||||++.+.+|+++|.++|+ ++|+.+++++++||.|.++.+|++|++|.||+|..
T Consensus        72 ~tp~~~h~~~~~~al~--aGkhVl~EKP~a~~~~ea~~l~~~a~-~~g~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~  148 (359)
T 3e18_A           72 ATPNDSHKELAISALE--AGKHVVCEKPVTMTSEDLLAIMDVAK-RVNKHFMVHQNRRWDEDFLIIKEMFEQKTIGEMFH  148 (359)
T ss_dssp             CSCGGGHHHHHHHHHH--TTCEEEEESSCCSSHHHHHHHHHHHH-HHTCCEEEECGGGGCHHHHHHHHHHHHTTTSSEEE
T ss_pred             cCCcHHHHHHHHHHHH--CCCCEEeeCCCcCCHHHHHHHHHHHH-HhCCeEEEEeeeccCHHHHHHHHHHHcCCCCCeEE
Confidence            9999999999999999  99999999999999999999999995 45999999999999999999999999999999999


Q ss_pred             EEEeeccCCcccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCccccCCCCCcccccEEEEE
Q 017143          161 VAIREHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIV  240 (376)
Q Consensus       161 ~~~~~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l  240 (376)
                      ++.++....  ..+.+|+.+...+||+++|+|+|.+|+++||+|.+|++|++......          ..+++|.+.+++
T Consensus       149 ~~~~~~~~~--~~~~~wr~~~~~gGG~l~d~g~H~iD~~~~l~G~~~~~v~a~~~~~~----------~~~~~d~~~~~l  216 (359)
T 3e18_A          149 LESRVHGAN--GIPGDWRHLKAHGGGMVLDWGVHLLDQLLFLVDSNVKSVSANLSFAL----------GDEVDDGFVTFI  216 (359)
T ss_dssp             EEEEEECSS--CSCSSGGGCGGGTCSHHHHTHHHHHHHHHHHCCSCEEEEEEEEECTT----------CCSSCSEEEEEE
T ss_pred             EEEEEecCC--CCCCCcccCcCCCCcHHHHHhhHHHHHHHHHhCCCCeEEEEEEEecC----------CCCCCceEEEEE
Confidence            988654432  23467988888899999999999999999999988999999865421          125789999999


Q ss_pred             EecCCcEEEEEEEEeecCCCCceEEEEEecCCeeeeeccccee--eeecccCCc---------cceEEe-e-ccCcc-c-
Q 017143          241 EFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIV--RFATREAGR---------EDVQTL-K-AEDDR-I-  305 (376)
Q Consensus       241 ~~~~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~~~--~~~~~~~~~---------~~~~~~-~-~~~~~-~-  305 (376)
                      +|+||.+++++.++....  ...+++|+|++|++.++......  .........         .+.... . ..... . 
T Consensus       217 ~~~~G~~~~i~~s~~~~~--~~~~~~i~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  294 (359)
T 3e18_A          217 TFENGITAQIEVGTTNFI--KLPRWYVKGTEGTGIIHDWDLSGEIVKPTALAKTSEPTPIKAGQGLTKTMAPPSEEATNT  294 (359)
T ss_dssp             EETTSCEEEEEEESSCSS--CCCSEEEEETTEEEEECSTTCCEEEEEECTTTTTCCCCCEEETTEEESTTSCCCGGGEEE
T ss_pred             EECCCCEEEEEEeeccCC--CCCeEEEEeeeEEEEEcCcCccchhhccccccccccCCccccccccccccCCcCCCcccc
Confidence            999999999998775432  23479999999999986532211  111000000         000000 0 00000 0 


Q ss_pred             cccCCCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCEEEehhh
Q 017143          306 EYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAIEEV  366 (376)
Q Consensus       306 ~~~~~~~~~~~~~l~~f~~~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~g~~v~~~~~  366 (376)
                      .......+.+..++++|+++|+  ++.++.++++|++++++|++|+++|+++|++|.|++-
T Consensus       295 ~~~~~~~~~~~~~~~~f~~ai~--~~~~~~~~~~dal~~~~ii~A~~~Sa~~g~~V~l~~~  353 (359)
T 3e18_A          295 LSLPAPAKLAPSFYNNFVDVLN--NTSEPIVQNEEVYQVLKLIEAIFEAAETNRTVHSIEG  353 (359)
T ss_dssp             ECCCCCCCCCSCHHHHHHHHHT--TSSCCSSCHHHHHHHHHHHHHHHHHHHHTSCEEC---
T ss_pred             eecCCCCCCHHHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHHHHHHhhCcEEEEecc
Confidence            0001112455678999999998  7778889999999999999999999999999999764

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=100.00  E-value=8.1e-58  Score=428.20  Aligned_cols=340  Identities=17%  Similarity=0.203  Sum_probs=276.3

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      ++++||||||+|.+|..|++.+.+.  ++++|++|||++++   +++++++++|++  .|+|++++++++++|+|+||||
T Consensus         3 ~~~~~vgiiG~G~~g~~~~~~l~~~--~~~~lvav~d~~~~---~~~~~~~~~g~~--~~~~~~~~l~~~~~D~V~i~tp   75 (354)
T 3db2_A            3 YNPVGVAAIGLGRWAYVMADAYTKS--EKLKLVTCYSRTED---KREKFGKRYNCA--GDATMEALLAREDVEMVIITVP   75 (354)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHTTC--SSEEEEEEECSSHH---HHHHHHHHHTCC--CCSSHHHHHHCSSCCEEEECSC
T ss_pred             CCcceEEEEccCHHHHHHHHHHHhC--CCcEEEEEECCCHH---HHHHHHHHcCCC--CcCCHHHHhcCCCCCEEEEeCC
Confidence            4579999999999999999999988  89999999999998   677888899987  6999999999888999999999


Q ss_pred             CCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEEEE
Q 017143           84 NMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAI  163 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~~~  163 (376)
                      +..|.+++++||+  +||||+||||++.+.+|+++|.++++ ++|+.+++++++||.|.++.+|++|++|.||+|..+++
T Consensus        76 ~~~h~~~~~~al~--~gk~vl~EKP~~~~~~~~~~l~~~a~-~~~~~~~v~~~~R~~p~~~~~k~~i~~g~iG~i~~v~~  152 (354)
T 3db2_A           76 NDKHAEVIEQCAR--SGKHIYVEKPISVSLDHAQRIDQVIK-ETGVKFLCGHSSRRLGALRKMKEMIDTKEIGEVSSIEA  152 (354)
T ss_dssp             TTSHHHHHHHHHH--TTCEEEEESSSCSSHHHHHHHHHHHH-HHCCCEEEECGGGGSHHHHHHHHHHHTTTTCCEEEEEE
T ss_pred             hHHHHHHHHHHHH--cCCEEEEccCCCCCHHHHHHHHHHHH-HcCCeEEEeechhcCHHHHHHHHHHhcCCCCCeEEEEE
Confidence            9999999999999  99999999999999999999999995 45999999999999999999999999999999999988


Q ss_pred             eeccCCc-ccccCccccccc-cCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCccccCCCCCcccccEEEEEE
Q 017143          164 REHRFPF-LVKVNDWNRFNE-NTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVE  241 (376)
Q Consensus       164 ~~~~~~~-~~~~~~w~~~~~-~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l~  241 (376)
                      .+..... .+.+.+|+.+.. .+||.++|+|+|.+|+++||+| +|.+|++........         .+++|.+.++++
T Consensus       153 ~~~~~~~~~~~~~~w~~~~~~~ggG~l~d~g~H~ld~~~~l~G-~~~~V~a~~~~~~~~---------~~~~d~~~~~l~  222 (354)
T 3db2_A          153 VFSNERGLELKKGNWRGEPATAPGGPLTQLGVHQIDNLQFLLG-PVARVFNFGKPMYTE---------VENITVNQTLLE  222 (354)
T ss_dssp             EEECSGGGTCCTTCGGGCTTTSTTTHHHHTHHHHHHHHHHHHC-CEEEEEEEEECCSCS---------SSSCCEEEEEEE
T ss_pred             EEEeccCcccccCCCccccccCCCceeccchhHHHHHHHHHhC-CCeEEEEEeeccCCC---------CCCCceEEEEEE
Confidence            6533211 124567887655 5788999999999999999999 699999987654321         367899999999


Q ss_pred             ecCCcEEEEEEEEeecCCCCceEEEEEecCCeeeeecccceeeeecccCCccceEEeeccC---------ccccccCCCC
Q 017143          242 FENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAED---------DRIEYEGLHH  312 (376)
Q Consensus       242 ~~~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~  312 (376)
                      |+||.++++..++..++  . .+++|+|++|++.++.....+.................+.         +.........
T Consensus       223 ~~~G~~~~~~~s~~~~~--~-~~~~i~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (354)
T 3db2_A          223 FEDGKQAYLGTNWACPG--V-FSINVYGTKANLFYQLDFSWWSNSDVTDEHSTLIKREFASMSDDPDNRILRDVKVDFES  299 (354)
T ss_dssp             ETTSCEEEEEEESSSSC--E-EEEEEEESSEEEEEEECGGGTTSTTSGGGGEEEEEEEECC------CCCEEEEECCCCC
T ss_pred             ECCCCEEEEEEEeccCC--c-eEEEEEeccEEEEEeCCCcEEEEccCCCccccccccccccccCCCccCCCcccceeccc
Confidence            99999999998887433  2 6899999999999876542222211111000000000000         0000001223


Q ss_pred             CCCHH-HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCEEEehhhhh
Q 017143          313 GSSYL-EHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAIEEVME  368 (376)
Q Consensus       313 ~~~~~-~l~~f~~~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~g~~v~~~~~~~  368 (376)
                      +.+.. ++++|+++|+  ++.++.++++|+++++++++|+++|+++|++|.|+++++
T Consensus       300 ~~~~~~~~~~f~~ai~--~g~~~~~~~~d~~~~~~i~~a~~~Sa~~g~~V~l~ei~~  354 (354)
T 3db2_A          300 VDHLRVEVEEVADVIR--NGGETEIGAEASLRNLAVVLAAVKSVHEKRPVEIAEIIG  354 (354)
T ss_dssp             CCHHHHHHHHHHHHHH--HCCCCSSCHHHHHHHHHHHHHHHHHHHHTSCEEHHHHHC
T ss_pred             ccccHHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHHHHHHhcCCceeHHHhcC
Confidence            55666 9999999999  667788999999999999999999999999999998763

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=100.00  E-value=5.7e-58  Score=430.22  Aligned_cols=340  Identities=17%  Similarity=0.186  Sum_probs=257.4

Q ss_pred             CCCCCceeEEEEeCChhhHH-HHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEE
Q 017143            1 MAANDTVKYGIIGMGMMGRE-HFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVV   79 (376)
Q Consensus         1 m~~~~~~~v~iiG~G~~g~~-~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~   79 (376)
                      |+ |+++||||||+|.+|+. |++.+...  ++++|++|||+++++      ++++++. ++.|+|+++||+++++|+|+
T Consensus         1 M~-~~~~rvgiiG~G~~g~~~~~~~l~~~--~~~~l~av~d~~~~~------~~~~~~~-~~~~~~~~~ll~~~~vD~V~   70 (362)
T 3fhl_A            1 MS-LEIIKTGLAAFGMSGQVFHAPFISTN--PHFELYKIVERSKEL------SKERYPQ-ASIVRSFKELTEDPEIDLIV   70 (362)
T ss_dssp             ---CCCEEEEESCCSHHHHHTTHHHHHHC--TTEEEEEEECSSCCG------GGTTCTT-SEEESCSHHHHTCTTCCEEE
T ss_pred             CC-CCceEEEEECCCHHHHHHHHHHHhhC--CCeEEEEEEcCCHHH------HHHhCCC-CceECCHHHHhcCCCCCEEE
Confidence            55 45799999999999996 99999888  899999999999873      3456743 36999999999999999999


Q ss_pred             EeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceE
Q 017143           80 VSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVK  159 (376)
Q Consensus        80 i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~  159 (376)
                      ||||+..|++++++||+  +|||||||||++.+++|+++|+++|+ ++|+.+++++++||.|.++.+|++|++|.||+|+
T Consensus        71 i~tp~~~H~~~~~~al~--aGkhVl~EKP~a~~~~ea~~l~~~a~-~~g~~~~v~~~~R~~p~~~~~k~~i~~G~iG~i~  147 (362)
T 3fhl_A           71 VNTPDNTHYEYAGMALE--AGKNVVVEKPFTSTTKQGEELIALAK-KKGLMLSVYQNRRWDADFLTVRDILAKSLLGRLV  147 (362)
T ss_dssp             ECSCGGGHHHHHHHHHH--TTCEEEEESSCCSSHHHHHHHHHHHH-HHTCCEEEECGGGGSHHHHHHHHHHHTTTTSSEE
T ss_pred             EeCChHHHHHHHHHHHH--CCCeEEEecCCCCCHHHHHHHHHHHH-HcCCEEEEEecceeCHHHHHHHHHHHcCCCCCeE
Confidence            99999999999999999  99999999999999999999999995 4599999999999999999999999999999999


Q ss_pred             EEEEeeccCCcccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCccccCCCCCcccccEEEE
Q 017143          160 MVAIREHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVI  239 (376)
Q Consensus       160 ~~~~~~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~  239 (376)
                      .+++.+.++........|+.+...+||+++|+|+|.+|+++||+| +|++|++.......         ..+++|.+.++
T Consensus       148 ~v~~~~~~~~~~~~~~~w~~~~~~ggG~l~d~g~H~id~~~~l~G-~~~~V~a~~~~~~~---------~~~~~d~~~~~  217 (362)
T 3fhl_A          148 EYESTFARYRNFIKPNTWKETGESGGGLTYNLGSHLIDQAIQLFG-MPEAVFADLGILRE---------GGKVDDYFIIH  217 (362)
T ss_dssp             EEEEEEECBCCC--------------CHHHHTHHHHHHHHHHHHC-CEEEEEEEEECCST---------TCCSCCEEEEE
T ss_pred             EEEEEecccCCCCCccccccCCCCCCceeeeehhhHHHHHHHHhC-CCcEEEEEEEEeCC---------CCCcceEEEEE
Confidence            999876544333334459887778999999999999999999999 89999998654321         23678999999


Q ss_pred             EEecC---CcEEEEEEEEeecCCCCceEEEEEecCCeeeeecccce---eeeeccc----CC---cc--ceEEeeccCc-
Q 017143          240 VEFEN---GSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESI---VRFATRE----AG---RE--DVQTLKAEDD-  303 (376)
Q Consensus       240 l~~~~---G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~~---~~~~~~~----~~---~~--~~~~~~~~~~-  303 (376)
                      |+|+|   |..+++.+++..+.  ...+++|+|++|++.++..+..   +......    .+   ..  +.......+. 
T Consensus       218 l~~~~~~~G~~~~~~~s~~~~~--~~~~~~i~G~~G~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  295 (362)
T 3fhl_A          218 LLHPSLAPNVKITLKASYLMRE--AEPRFALHGTLGSYVKYGVDKQEAALLAGEIPERPNWGEESEQEWGLLHTEINGKE  295 (362)
T ss_dssp             EEEETTSTTSEEEEEEESBCSS--CCCSEEEEESSCEEEECCC---------------CCCSCCCGGGCEEEEEEETTEE
T ss_pred             EEECCCCCCeEEEEEEEeccCC--CCCEEEEEECCcEEEEeCCCccHHHHhcCCCCCCCccCCCchhhCcEEEecCCCcc
Confidence            99999   99999998886543  2347999999999987532211   1100000    00   00  0000000000 


Q ss_pred             cccccCCCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCEEEehhhh
Q 017143          304 RIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAIEEVM  367 (376)
Q Consensus       304 ~~~~~~~~~~~~~~~l~~f~~~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~g~~v~~~~~~  367 (376)
                      .........+.+..++++|+++|+  ++.++.++++|++++++|++|+++|+++|++|.++.-.
T Consensus       296 ~~~~~~~~~~~~~~~~~~f~~ai~--~g~~~~~~~~dal~~~~ii~a~~~Sa~~g~~V~l~~~~  357 (362)
T 3fhl_A          296 ICRKYPGIAGNYGGFYQNIYEHLC--LGQPLETHAQDILNVIRIIEAAYQSHRENKIVNLKEGH  357 (362)
T ss_dssp             EEEEECCCCCCTTHHHHHHHHHHH--HCCCCSCBTHHHHHHHHHHHHHHHHHHHTSCEEC----
T ss_pred             eeeecCCCCCCHHHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHHHhhhhcCCEEEecccc
Confidence            000111223567789999999999  66778899999999999999999999999999997643

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=100.00  E-value=6.9e-58  Score=425.70  Aligned_cols=325  Identities=21%  Similarity=0.266  Sum_probs=267.8

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh-hhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL-QSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      |+||||||+|.++..|++.+  .  ++++|++|||+++ ++.+++.+.+++||++++.|+|+++||+++++|+|+|+||+
T Consensus         2 ~~rvgiiG~G~~~~~~~~~l--~--~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~   77 (337)
T 3ip3_A            2 SLKICVIGSSGHFRYALEGL--D--EECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVF   77 (337)
T ss_dssp             CEEEEEECSSSCHHHHHTTC--C--TTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSH
T ss_pred             ceEEEEEccchhHHHHHHhc--C--CCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCc
Confidence            59999999999999999888  4  8999999999998 56566777777888744799999999999889999999999


Q ss_pred             CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeE--EEEeeccccCHHHHHHHHHHHcCCCCceEEEE
Q 017143           85 MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDIL--VQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVA  162 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~--~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~~  162 (376)
                      ..|++++++||+  +|||||||||++.+.+|+++|.+++++ +|+.  +++++++||.|.++.+|++|++|.||+|+.++
T Consensus        78 ~~H~~~~~~al~--aGkhVl~EKPla~~~~ea~~l~~~a~~-~g~~~~~~v~~~~R~~p~~~~~k~~i~~g~iG~i~~i~  154 (337)
T 3ip3_A           78 SLNGKILLEALE--RKIHAFVEKPIATTFEDLEKIRSVYQK-VRNEVFFTAMFGIRYRPHFLTAKKLVSEGAVGEIRLVN  154 (337)
T ss_dssp             HHHHHHHHHHHH--TTCEEEECSSSCSSHHHHHHHHHHHHH-HTTTCCEEECCGGGGSHHHHHHHHHHHHTTTSSEEEEE
T ss_pred             chHHHHHHHHHH--CCCcEEEeCCCCCCHHHHHHHHHHHHH-hCCceEEEecccccCCHHHHHHHHHHhcCCccceEEEE
Confidence            999999999999  999999999999999999999999954 5888  99999999999999999999999999999998


Q ss_pred             EeeccCCcccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCccccCCCCCcccccEEEEEEe
Q 017143          163 IREHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEF  242 (376)
Q Consensus       163 ~~~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~  242 (376)
                      +.+...  +...+.|+.+...+||.++|+|+|.+|+++||+|.+|.+|++........       ...+++|.+.++++|
T Consensus       155 ~~~~~~--~~~~~~~~~~~~~~gG~l~d~g~H~iD~~~~l~G~~~~~V~a~~~~~~~~-------~~~~~~d~~~~~l~~  225 (337)
T 3ip3_A          155 TQKSYK--LGQRPDFYKKRETYGGTIPWVGIHAIDWIHWITGKKFLSVYATHSRLHNS-------GHGELETTALCHFTL  225 (337)
T ss_dssp             EEEEBC--CCSCCGGGGSHHHHCCHHHHTTHHHHHHHHHHHCCCEEEEEEEEECTTCT-------TCTTCCSEEEEEEEE
T ss_pred             EEeccc--CCCCcchhhcccccCCchhhcchHHHHHHHHhcCCCceEEEEEecccccC-------CCCCcceEEEEEEEE
Confidence            864332  12235676666678999999999999999999997799999986553221       123678999999999


Q ss_pred             cCCcEEEEEEEEeecCC---CCceEEEEEecCCeeeeecccceeeeecccCCccceEEeeccCccccccCCCCCCCHHHH
Q 017143          243 ENGSRGMLDLCMFAEGS---KNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAEDDRIEYEGLHHGSSYLEH  319 (376)
Q Consensus       243 ~~G~~~~l~~~~~~~~~---~~~~~~~i~Gt~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  319 (376)
                      +||.++++..+|..+..   ....+++|+|++|++.+....  +.....    .+.....            ...+..++
T Consensus       226 ~~G~~~~~~~s~~~~~~~~~~~~~~~~i~G~~G~i~~~~~~--~~~~~~----~~~~~~~------------~~~~~~~~  287 (337)
T 3ip3_A          226 ENEVFASLSIDYLRPQGAPTHDDDRMRIVGTRGIVEVINER--VFLTDE----KGHREVP------------LVEKGQIF  287 (337)
T ss_dssp             GGGEEEEEEEESCCCTTSSSSBCCEEEEEESSCEEEEETTE--EEEEET----TEEEEEC------------CCCCCCHH
T ss_pred             CCCcEEEEEEEEEcCCCCCCCCCcEEEEEecceEEEEeCCE--EEEecC----CCceecc------------CCchHHHH
Confidence            99999999998865432   245589999999999975432  222111    1111111            12234589


Q ss_pred             HHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCEEEehhh
Q 017143          320 LNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAIEEV  366 (376)
Q Consensus       320 ~~f~~~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~g~~v~~~~~  366 (376)
                      ++|+++|+  ++.++.++++++++++++++|+++|+++|++|.++..
T Consensus       288 ~~f~~~i~--~~~~~~~~~~d~~~~~~i~~a~~~Sa~~g~~V~~~~~  332 (337)
T 3ip3_A          288 EDFLREIR--GQGKCMVTPEDSILTTEIALKARLSADTGQIVLIEGH  332 (337)
T ss_dssp             HHHHHHHT--TSSCCSSCHHHHHHHHHHHHHHHHHHHHTSCEEC---
T ss_pred             HHHHHHhc--CCCCCCCCHHHHHHHHHHHHHHHHHHHhCCeEEeecc
Confidence            99999998  7778889999999999999999999999999998654

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=100.00  E-value=2.5e-57  Score=424.93  Aligned_cols=340  Identities=19%  Similarity=0.266  Sum_probs=272.4

Q ss_pred             CCCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEe
Q 017143            2 AANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         2 ~~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~   81 (376)
                      ..++++||||||+|.+|..|++.+.+.. +++++++|||++++   +++++++++|++  .|+|++++++++++|+|+||
T Consensus         9 ~~~~~~rvgiiG~G~~g~~~~~~l~~~~-~~~~lvav~d~~~~---~~~~~~~~~~~~--~~~~~~~ll~~~~~D~V~i~   82 (354)
T 3q2i_A            9 ITDRKIRFALVGCGRIANNHFGALEKHA-DRAELIDVCDIDPA---ALKAAVERTGAR--GHASLTDMLAQTDADIVILT   82 (354)
T ss_dssp             CCSSCEEEEEECCSTTHHHHHHHHHHTT-TTEEEEEEECSSHH---HHHHHHHHHCCE--EESCHHHHHHHCCCSEEEEC
T ss_pred             CCCCcceEEEEcCcHHHHHHHHHHHhCC-CCeEEEEEEcCCHH---HHHHHHHHcCCc--eeCCHHHHhcCCCCCEEEEC
Confidence            3346899999999999999999988762 58999999999998   677888889964  99999999998889999999


Q ss_pred             CCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEE
Q 017143           82 TPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMV  161 (376)
Q Consensus        82 t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~  161 (376)
                      ||+..|.+++++|++  +||||+||||++.+.+++++|.++++ +.|+.+++++++||.|.++++|++|++|.||+|..+
T Consensus        83 tp~~~h~~~~~~al~--~gk~v~~EKP~a~~~~~~~~l~~~a~-~~g~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~v  159 (354)
T 3q2i_A           83 TPSGLHPTQSIECSE--AGFHVMTEKPMATRWEDGLEMVKAAD-KAKKHLFVVKQNRRNATLQLLKRAMQEKRFGRIYMV  159 (354)
T ss_dssp             SCGGGHHHHHHHHHH--TTCEEEECSSSCSSHHHHHHHHHHHH-HHTCCEEECCGGGGSHHHHHHHHHHHTTTTCSEEEE
T ss_pred             CCcHHHHHHHHHHHH--CCCCEEEeCCCcCCHHHHHHHHHHHH-HhCCeEEEEEcccCCHHHHHHHHHHhcCCCCceEEE
Confidence            999999999999999  89999999999999999999999995 459999999999999999999999999999999999


Q ss_pred             EEeeccC--CcccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCccccCCCCCcccccEEEE
Q 017143          162 AIREHRF--PFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVI  239 (376)
Q Consensus       162 ~~~~~~~--~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~  239 (376)
                      ++.+...  ..++...+|+.....+||.++|+|+|.+|+++||+| +|++|++.......         ..+++|.+.++
T Consensus       160 ~~~~~~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G-~~~~v~a~~~~~~~---------~~~~~d~~~~~  229 (354)
T 3q2i_A          160 NVNVFWTRPQEYYDAAGWRGTWEFDGGAFMNQASHYVDLLDWLIG-PVESVQAYTATLAR---------NIEVEDTGTVS  229 (354)
T ss_dssp             EEEEECBCCHHHHHTSTTTTCTTTTCCCCCCCTHHHHHHHHHHHC-CEEEEEEEEECSSS---------SSSSCSEEEEE
T ss_pred             EEEEEEecCchhccccCccccccCCCchhhhhhhHHHHHHHHhcC-CceEEEEEeeccCC---------CCCccceeEEE
Confidence            8764322  122334578877777899999999999999999999 89999998754321         23678999999


Q ss_pred             EEecCCcEEEEEEEEeecCCCCceEEEEEecCCeeeeeccc-ceeeeecccCCccceEEeeccCccccccCCCCCCCHHH
Q 017143          240 VEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPE-SIVRFATREAGREDVQTLKAEDDRIEYEGLHHGSSYLE  318 (376)
Q Consensus       240 l~~~~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (376)
                      ++|+||.+++++.++...+.....+++|+|++|++.++... ..+..+.............  .............+..+
T Consensus       230 l~~~~G~~~~~~~s~~~~~~~~~~~~~i~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  307 (354)
T 3q2i_A          230 VKWRSGALGSMNVTMLTYPKNLEGSITILGEKGSVRVGGVAVNEIQHWEFSEPHAMDEEIK--DASYATTSVYGFGHPLY  307 (354)
T ss_dssp             EEETTSCEEEEEEESBCSSSCCEEEEEEEETTEEEEEETTTTCEEEEEEESSCCGGGGGHH--HHC-------CCSHHHH
T ss_pred             EEECCCCEEEEEEEeeecCCCCCcEEEEEeccEEEEECCcccccceeeeecccCCcccccc--ccccCCcccCCccHHHH
Confidence            99999999999998876544456689999999999987421 1111111000000000000  00000000011123578


Q ss_pred             HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCEEEeh
Q 017143          319 HLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAIE  364 (376)
Q Consensus       319 l~~f~~~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~g~~v~~~  364 (376)
                      +++|+++|+  ++.++.++++|+++++++++|+++|+++|++|.||
T Consensus       308 ~~~f~~~i~--~~~~~~~~~~d~~~~~~i~~a~~~Sa~~g~~V~l~  351 (354)
T 3q2i_A          308 YDNVIKTMR--GEATPETDGREGLKSLELLIAMYLSARDGRRVSLP  351 (354)
T ss_dssp             HHHHHHHHT--TSCCCSSBHHHHHHHHHHHHHHHHHHHHTSCEESC
T ss_pred             HHHHHHHHh--cCCCCCCCHHHHHHHHHHHHHHHHHHhcCCeEeCC
Confidence            999999998  77788899999999999999999999999999985

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=100.00  E-value=6.3e-57  Score=419.43  Aligned_cols=324  Identities=24%  Similarity=0.316  Sum_probs=267.3

Q ss_pred             CCCCCceeEEEEeCC-hhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEE
Q 017143            1 MAANDTVKYGIIGMG-MMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVV   79 (376)
Q Consensus         1 m~~~~~~~v~iiG~G-~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~   79 (376)
                      |.+++++||||||+| .+|+.|++.+.+.. ++++|++|||++++   ++++++++|+++ ..|+|+++||+++++|+|+
T Consensus        13 ~~~~~~irvgiIG~G~~~g~~~~~~l~~~~-~~~~lvav~d~~~~---~~~~~a~~~~~~-~~~~~~~~ll~~~~vD~V~   87 (340)
T 1zh8_A           13 MKPLRKIRLGIVGCGIAARELHLPALKNLS-HLFEITAVTSRTRS---HAEEFAKMVGNP-AVFDSYEELLESGLVDAVD   87 (340)
T ss_dssp             ---CCCEEEEEECCSHHHHHTHHHHHHTTT-TTEEEEEEECSSHH---HHHHHHHHHSSC-EEESCHHHHHHSSCCSEEE
T ss_pred             cCCCCceeEEEEecCHHHHHHHHHHHHhCC-CceEEEEEEcCCHH---HHHHHHHHhCCC-cccCCHHHHhcCCCCCEEE
Confidence            556678999999999 79999999998752 58999999999998   677888999985 7899999999998999999


Q ss_pred             EeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceE
Q 017143           80 VSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVK  159 (376)
Q Consensus        80 i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~  159 (376)
                      |+||+..|++++++||+  +|||||||||++.+.+|+++|.++++ ++|+.+++++++||.|.++.+|++|++|.||+|.
T Consensus        88 i~tp~~~H~~~~~~al~--aGkhVl~EKPla~~~~ea~~l~~~a~-~~g~~~~v~~~~R~~p~~~~~k~~i~~g~iG~i~  164 (340)
T 1zh8_A           88 LTLPVELNLPFIEKALR--KGVHVICEKPISTDVETGKKVVELSE-KSEKTVYIAENFRHVPAFWKAKELVESGAIGDPV  164 (340)
T ss_dssp             ECCCGGGHHHHHHHHHH--TTCEEEEESSSSSSHHHHHHHHHHHH-HCSSCEEEECGGGGCHHHHHHHHHHHTTTTSSEE
T ss_pred             EeCCchHHHHHHHHHHH--CCCcEEEeCCCCCCHHHHHHHHHHHH-HcCCeEEEEecccCCHHHHHHHHHHhcCCCCCcE
Confidence            99999999999999999  99999999999999999999999994 5599999999999999999999999999999999


Q ss_pred             EEEEeeccCC---cccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCccccCCCCCcccccE
Q 017143          160 MVAIREHRFP---FLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNA  236 (376)
Q Consensus       160 ~~~~~~~~~~---~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~  236 (376)
                      .+++.+....   ..+...+|+.+...+||.++|+|+|.+|+++|++| +|.+|++.......         ..+.+|.+
T Consensus       165 ~v~~~~~~~~~~~~~~~~~~w~~~~~~~GG~l~d~g~H~ld~~~~l~G-~~~~V~a~~~~~~~---------~~~~~D~~  234 (340)
T 1zh8_A          165 FMNWQIWVGMDENNKYVHTDWRKKPKHVGGFLSDGGVHHAAAMRLILG-EIEWISAVAKDLSP---------LLGGMDFL  234 (340)
T ss_dssp             EEEEEEEBCCCTTCSGGGCHHHHTTCSTTTHHHHHHHHHHHHHHHHHC-CEEEEEEEEECCCT---------TSSSCCEE
T ss_pred             EEEEEEeccccccCCCCCcCceECCcCCCceeeeccHHHHHHHHHhhC-CCeEEEEEEEccCC---------CCCCcceE
Confidence            9988543221   12234578877777899999999999999999999 89999998654211         12578999


Q ss_pred             EEEEEecCCcEEEEEEEEeecCCCCceEEEEEecCCeeeeecccceeeeecccCCccceEEeeccCccccccCCCCCCCH
Q 017143          237 YVIVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAEDDRIEYEGLHHGSSY  316 (376)
Q Consensus       237 ~~~l~~~~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (376)
                      .++++|+||..+++..++..+..  . +++|+|++|++.+.......         . ...+.       .  ...+.+.
T Consensus       235 ~~~l~~~~G~~~~~~~s~~~~~~--~-~~~i~G~~G~i~~~~~~~~~---------~-~~~~~-------~--~~~~~~~  292 (340)
T 1zh8_A          235 SSIFEFENGTVGNYTISYSLKGN--E-RFEITGTKGKISISWDKIVL---------N-EEEMK-------V--PQENSYQ  292 (340)
T ss_dssp             EEEEEETTSCEEEEEEESSSBCC--C-EEEEEESSCEEEEETTEEEE---------T-TEEEE-------C--CCCCHHH
T ss_pred             EEEEEeCCCCEEEEEEEeeecCC--C-EEEEEeCcEEEEEEeCCccc---------c-ceeec-------C--CCcccHH
Confidence            99999999999999988765443  2 89999999999873311000         0 00111       1  1124566


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCEEEehhhh
Q 017143          317 LEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAIEEVM  367 (376)
Q Consensus       317 ~~l~~f~~~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~g~~v~~~~~~  367 (376)
                      .++++|+++|++ +...+.++++++++++++++|+++|  +|++|.+++++
T Consensus       293 ~~~~~f~~~i~~-g~~~p~~~~~~~l~~~~i~~a~~~S--~g~~V~l~~~~  340 (340)
T 1zh8_A          293 KEFEDFYQVVAE-GKPNDLGSPVQALKDLAFIEACVRS--AGNKVFVSSLL  340 (340)
T ss_dssp             HHHHHHHHHHHS-CCCCSSSCHHHHHHHHHHHHHHHHH--TTSCEEGGGGC
T ss_pred             HHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHHHHHc--CCCEEeCcccC
Confidence            899999999983 2444668999999999999999999  99999998863

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=100.00  E-value=4.4e-57  Score=427.76  Aligned_cols=352  Identities=17%  Similarity=0.230  Sum_probs=276.6

Q ss_pred             CCceeEEEEe-CChhhHH-HH----HHhhhhcCCCcEEE---------EEeCCChhhHHHHHHHHHhcCCCCCccCCHHH
Q 017143            4 NDTVKYGIIG-MGMMGRE-HF----INLHHLRSQGVSVV---------CIADPHLQSRQQALKLANAFDWPLKVFPGHQE   68 (376)
Q Consensus         4 ~~~~~v~iiG-~G~~g~~-~~----~~~~~~~~~~~~~~---------~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (376)
                      ++++|||||| +|.+|.. |+    .++.+.  ++++++         +|||++++   ++++++++||++ +.|+|+++
T Consensus         4 ~~~irigiiG~~G~~g~~~h~~~~~~~~~~~--~~~~l~~~~~~~~~~av~~~~~~---~a~~~a~~~~~~-~~~~~~~~   77 (383)
T 3oqb_A            4 TQRLGLIMNGVTGRMGLNQHLIRSIVAIRDQ--GGVRLKNGDRIMPDPILVGRSAE---KVEALAKRFNIA-RWTTDLDA   77 (383)
T ss_dssp             CEEEEEEEESTTSTHHHHTTTTTTHHHHHHH--TSEECTTSCEEEEEEEEECSSSH---HHHHHHHHTTCC-CEESCHHH
T ss_pred             CceeEEEEEeccchhhhhhhHHHHHHHHhhc--CceeecCCcccceeeEEEcCCHH---HHHHHHHHhCCC-cccCCHHH
Confidence            4689999999 9999998 99    888887  655544         79999998   788899999986 78999999


Q ss_pred             HhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHH
Q 017143           69 LLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQ  148 (376)
Q Consensus        69 ~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~  148 (376)
                      ||+++++|+|+|+||+..|++++++||+  +||||+||||++.+.+|+++|.++|+ ++|+.+++++++||.|.++.+|+
T Consensus        78 ll~~~~iD~V~i~tp~~~h~~~~~~al~--~Gk~V~~EKP~a~~~~~~~~l~~~a~-~~~~~~~v~~~~r~~p~~~~~~~  154 (383)
T 3oqb_A           78 ALADKNDTMFFDAATTQARPGLLTQAIN--AGKHVYCEKPIATNFEEALEVVKLAN-SKGVKHGTVQDKLFLPGLKKIAF  154 (383)
T ss_dssp             HHHCSSCCEEEECSCSSSSHHHHHHHHT--TTCEEEECSCSCSSHHHHHHHHHHHH-HTTCCEEECCGGGGSHHHHHHHH
T ss_pred             HhcCCCCCEEEECCCchHHHHHHHHHHH--CCCeEEEcCCCCCCHHHHHHHHHHHH-HcCCeEEEEeccccCHHHHHHHH
Confidence            9999999999999999999999999999  99999999999999999999999995 45999999999999999999999


Q ss_pred             HHHcCCCCceEEEEEeeccCC-----cccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCcc
Q 017143          149 IVKSGSIGQVKMVAIREHRFP-----FLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDE  223 (376)
Q Consensus       149 ~i~~g~iG~i~~~~~~~~~~~-----~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~  223 (376)
                      +|++|.||+|..+++.+..+.     ....+.+|+.+...+||+++|+|+|.+|+++||+| +|.+|++...........
T Consensus       155 ~i~~g~iG~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ggG~l~d~g~H~id~~~~l~G-~~~~v~a~~~~~~~~~~~  233 (383)
T 3oqb_A          155 LRDSGFFGRILSVRGEFGYWVFEGGWQEAQRPSWNYRDEDGGGIILDMVCHWRYVLDNLFG-NVQSVVCIGNTDIPERFD  233 (383)
T ss_dssp             HHHTTTTSSEEEEEEEEECCCCCSSSSCCSSCGGGGCTTTTCCHHHHHHHHHHHHHHHHTC-CEEEEEEEEECSCSEEEC
T ss_pred             HHHcCCCCCcEEEEEEeccccccccccccCCCCcccccccCCceeeehhhHHHHHHHHHcC-CCeEEEEEEeeccccccc
Confidence            999999999999998643211     11234578877778999999999999999999999 899999987654321110


Q ss_pred             ccC-CCCCcccccEEEEEEecCCcEEEEEEEEeecCCC-CceEEEEEecCCeeeeecccceeeeecccCCc--cc--eEE
Q 017143          224 MYN-GKVPDIIDNAYVIVEFENGSRGMLDLCMFAEGSK-NEQEIVVVGNTGKGEAFVPESIVRFATREAGR--ED--VQT  297 (376)
Q Consensus       224 ~~~-~~~~~~~d~~~~~l~~~~G~~~~l~~~~~~~~~~-~~~~~~i~Gt~G~i~~~~~~~~~~~~~~~~~~--~~--~~~  297 (376)
                      ..+ ....+++|.+.++++|+||.++++..++..+... ...+++|+|++|++.++...............  ..  ...
T Consensus       234 ~~g~~~~~~~~D~~~~~l~~~~G~~~~~~~s~~~~~~~~~~~~~~i~Gt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (383)
T 3oqb_A          234 EQGKKYKATADDSAYATFQLEGGVIAHINMSWVTRVYRDDLVTFQVDGTHGSAVAGLSDCMIQARQATPRPVWNPDEKRL  313 (383)
T ss_dssp             TTSCEEECCSCCEEEEEEEETTTEEEEEEEESSCCCCSSSSEEEEEEESSEEEEECSSCEEEEEGGGCCCCCCCC----C
T ss_pred             CCCceeccccCCcEEEEEEeCCCCEEEEEEEeecccCCCCceEEEEEecccEEEEecccccccccCCCCccccCCCCCcc
Confidence            000 0123688999999999999999999988665433 34589999999999876543332221110000  00  000


Q ss_pred             eeccCc--cccccCCCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCEEEehhhh
Q 017143          298 LKAEDD--RIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAIEEVM  367 (376)
Q Consensus       298 ~~~~~~--~~~~~~~~~~~~~~~l~~f~~~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~g~~v~~~~~~  367 (376)
                      ......  .........+.+..++++|+++|+  ++.++.++++|+++++++++|+++|+++|++|.+++++
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~F~~ai~--~g~~~~~~~~d~~~~~~i~~a~~~Sa~~g~~V~l~~~~  383 (383)
T 3oqb_A          314 HDFYGDWQKLPDNVSYDNGFKEQWEMFIRHVY--EDAPYKFTLLEGAKGVQLAECALKSWKERRWIDVAPIK  383 (383)
T ss_dssp             CCGGGGSEECCCCSCCCCHHHHHHHHHHHHHH--HCCCCCCSHHHHHHHHHHHHHHHHHHHHTBCEECCCC-
T ss_pred             cccccccccCCCCCCccchHHHHHHHHHHHHh--cCCCCCCCHHHHHHHHHHHHHHHHHHhhCCeEeccCCC
Confidence            000000  000001223456689999999999  66778899999999999999999999999999998864

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=100.00  E-value=1.7e-56  Score=425.17  Aligned_cols=344  Identities=20%  Similarity=0.263  Sum_probs=265.9

Q ss_pred             CCCceeEEEEeCCh---hhHHHHHHhhhhcCCCcEEEE-EeCCChhhHHHHHHHHHhcCCC-CCccCCHHHHhhC-----
Q 017143            3 ANDTVKYGIIGMGM---MGREHFINLHHLRSQGVSVVC-IADPHLQSRQQALKLANAFDWP-LKVFPGHQELLDS-----   72 (376)
Q Consensus         3 ~~~~~~v~iiG~G~---~g~~~~~~~~~~~~~~~~~~~-v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~-----   72 (376)
                      .|+++||||||+|.   +|..|++++...  ++++|++ |||++++   +++++++++|++ .+.|+|+++||++     
T Consensus         9 ~m~~~rvgiiG~G~~~~ig~~h~~~~~~~--~~~~lva~v~d~~~~---~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~   83 (398)
T 3dty_A            9 IPQPIRWAMVGGGSQSQIGYIHRCAALRD--NTFVLVAGAFDIDPI---RGSAFGEQLGVDSERCYADYLSMFEQEARRA   83 (398)
T ss_dssp             SCSCEEEEEEECCTTCSSHHHHHHHHHGG--GSEEEEEEECCSSHH---HHHHHHHHTTCCGGGBCSSHHHHHHHHTTCT
T ss_pred             ccCcceEEEEcCCccchhHHHHHHHHhhC--CCeEEEEEEeCCCHH---HHHHHHHHhCCCcceeeCCHHHHHhcccccC
Confidence            35789999999999   999999999887  7899998 8999998   788899999985 3689999999997     


Q ss_pred             CCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHc
Q 017143           73 GLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKS  152 (376)
Q Consensus        73 ~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~  152 (376)
                      +++|+|+|+||+..|++++++||+  +|||||||||++.+++|+++|+++++ ++|+.+++++++||.|.++++|++|++
T Consensus        84 ~~vD~V~i~tp~~~H~~~~~~al~--aGkhVl~EKPla~~~~ea~~l~~~a~-~~g~~~~v~~~~r~~p~~~~~k~~i~~  160 (398)
T 3dty_A           84 DGIQAVSIATPNGTHYSITKAALE--AGLHVVCEKPLCFTVEQAENLRELSH-KHNRIVGVTYGYAGHQLIEQAREMIAA  160 (398)
T ss_dssp             TCCSEEEEESCGGGHHHHHHHHHH--TTCEEEECSCSCSCHHHHHHHHHHHH-HTTCCEEECCGGGGSHHHHHHHHHHHT
T ss_pred             CCCCEEEECCCcHHHHHHHHHHHH--CCCeEEEeCCCcCCHHHHHHHHHHHH-HcCCeEEEEecccCCHHHHHHHHHHhc
Confidence            679999999999999999999999  99999999999999999999999995 459999999999999999999999999


Q ss_pred             CCCCceEEEEEeeccC--Ccc----cccCccccccccCC--cccccccccHHHHHHHH-hCCCCeEEEEecccccccCcc
Q 017143          153 GSIGQVKMVAIREHRF--PFL----VKVNDWNRFNENTG--GTLVEKCCHFFDLMRLF-VGSNPMRVMASGAVDVNHKDE  223 (376)
Q Consensus       153 g~iG~i~~~~~~~~~~--~~~----~~~~~w~~~~~~~g--G~l~d~g~H~ld~~~~l-~G~~~~~V~a~~~~~~~~~~~  223 (376)
                      |.||+|+.+++.+...  ...    .....|+.+...+|  |+++|+|+|.+|+++|| +|.+|++|++.........  
T Consensus       161 G~iG~i~~v~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~G~gG~l~d~g~H~idl~~~l~~G~~~~~V~a~~~~~~~~~--  238 (398)
T 3dty_A          161 GELGDVRMVHMQFAHGFHSAPVEAQSQATQWRVDPRQAGPSYVLGDVGTHPLYLSEVMLPDLKIKRLMCSRQSFVASR--  238 (398)
T ss_dssp             TTTCSEEEEEEEEECCTTCC------------------CCCSHHHHTTHHHHHHHHHHCTTCCEEEEEEEEECSSGGG--
T ss_pred             CCCCCeEEEEEEEecccccCccccccCCCCcccCHHHcCCccHHHHHHHHHHHHHHHHhcCCCcEEEEEEeEeecCCC--
Confidence            9999999999875321  111    23467887766554  89999999999999999 9988999999876543211  


Q ss_pred             ccCCCCCcccccEEEEEEecCCcEEEEEEEEeecCCCCceEEEEEecCCeeeeecccc-eeeeecccCCccceEEeeccC
Q 017143          224 MYNGKVPDIIDNAYVIVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPES-IVRFATREAGREDVQTLKAED  302 (376)
Q Consensus       224 ~~~~~~~~~~d~~~~~l~~~~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  302 (376)
                            .+++|.+.++++|+||+++++..++..++.....+++|+|++|++.++.... .+.+... .+.  ...+....
T Consensus       239 ------~~~~D~~~~~l~~~~G~~~~~~~s~~~~~~~~~~~~~i~G~~G~i~~~~~~~~~l~~~~~-~~~--~~~~~~~~  309 (398)
T 3dty_A          239 ------APLEDNAYTLMEYEGGAMGMVWSSAVNAGSMHGQKIRVIGSRASLEWWDERPNQLSFEVQ-GQP--AQILERGM  309 (398)
T ss_dssp             ------TTSCSEEEEEEEETTSCEEEEEEESCCTTCSCCEEEEEEESSEEEEEETTSTTEEEEEET-TSC--EEEEETTC
T ss_pred             ------CCcceEEEEEEEECCCCEEEEEEeccccCCCCCcEEEEEecceEEEEecCCCCEEEEEEC-CCC--cEEEEcCC
Confidence                  1478999999999999999999998876666667999999999999875332 2222211 111  11111110


Q ss_pred             cc--------ccccCCCC----CCCHHHHHHHHHHHHh--cCCC-----CCCCCHHHHHHHHHHHHHHHHHHHcCCEEEe
Q 017143          303 DR--------IEYEGLHH----GSSYLEHLNFLSAIRA--KGAK-----VPAVDLQDGLISVAIGVAAQLSIEKGRFIAI  363 (376)
Q Consensus       303 ~~--------~~~~~~~~----~~~~~~l~~f~~~i~~--~~~~-----~~~~~~~d~~~~~~ii~a~~~S~~~g~~v~~  363 (376)
                      ..        ......+.    +.+..++++|+++|+.  .+..     .+.++++|+++++++++|+++|+++|++|.+
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~g~~~~p~~~~~~~~~dg~~~~~i~eA~~~S~~~g~~v~~  389 (398)
T 3dty_A          310 GYLHPNALIDDRIGGGHPEGLFEAWANLYYRFALAMDATDRSDTQALSAVRYPGIDAGVEGVRWVERCVLSADNDSIWVA  389 (398)
T ss_dssp             TTSCGGGTTTCCSCTTSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHTTTCCEE
T ss_pred             CCCChhhhhhcccCCCCcCcHHHHHHHHHHHHHHHHHhhhCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence            00        01111111    1234788999999982  1332     1478999999999999999999999998886


Q ss_pred             hh
Q 017143          364 EE  365 (376)
Q Consensus       364 ~~  365 (376)
                      ++
T Consensus       390 ~~  391 (398)
T 3dty_A          390 YE  391 (398)
T ss_dssp             SS
T ss_pred             ec
Confidence            53

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=100.00  E-value=1.5e-56  Score=415.42  Aligned_cols=322  Identities=18%  Similarity=0.205  Sum_probs=262.3

Q ss_pred             CCCCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEE
Q 017143            1 MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         1 m~~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      |+ |+++||||||+|.+|..|++.+...  +++++++|||++++   +++++++++|++ +.|+|++++++++++|+|+|
T Consensus         1 M~-m~~~rigiiG~G~ig~~~~~~l~~~--~~~~~~av~d~~~~---~~~~~a~~~~~~-~~~~~~~~ll~~~~~D~V~i   73 (329)
T 3evn_A            1 MS-LSKVRYGVVSTAKVAPRFIEGVRLA--GNGEVVAVSSRTLE---SAQAFANKYHLP-KAYDKLEDMLADESIDVIYV   73 (329)
T ss_dssp             -----CEEEEEEBCCTTHHHHHHHHHHH--CSEEEEEEECSCSS---TTCC---CCCCS-CEESCHHHHHTCTTCCEEEE
T ss_pred             CC-CCceEEEEEechHHHHHHHHHHHhC--CCcEEEEEEcCCHH---HHHHHHHHcCCC-cccCCHHHHhcCCCCCEEEE
Confidence            54 4579999999999999999999988  89999999999998   577888899986 78999999999888999999


Q ss_pred             eCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEE
Q 017143           81 STPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKM  160 (376)
Q Consensus        81 ~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~  160 (376)
                      +||+..|++++++||+  +||||+||||++.+.+|+++|.+++++ +|+.+++++++||.|.++.+|++|++|.||+|..
T Consensus        74 ~tp~~~h~~~~~~al~--aGk~Vl~EKP~a~~~~e~~~l~~~a~~-~~~~~~v~~~~r~~p~~~~~~~~i~~g~iG~i~~  150 (329)
T 3evn_A           74 ATINQDHYKVAKAALL--AGKHVLVEKPFTLTYDQANELFALAES-CNLFLMEAQKSVFIPMTQVIKKLLASGEIGEVIS  150 (329)
T ss_dssp             CSCGGGHHHHHHHHHH--TTCEEEEESSCCSSHHHHHHHHHHHHH-TTCCEEEECSSCSSHHHHHHHHHHHTTTTCSEEE
T ss_pred             CCCcHHHHHHHHHHHH--CCCeEEEccCCcCCHHHHHHHHHHHHH-cCCEEEEEEcccCCHHHHHHHHHHhCCCCCCeEE
Confidence            9999999999999999  999999999999999999999999955 5999999999999999999999999999999999


Q ss_pred             EEEeeccCCcccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCccccCCCCCcccccEEEEE
Q 017143          161 VAIREHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIV  240 (376)
Q Consensus       161 ~~~~~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l  240 (376)
                      +++.+.. +. .....|+.+...+||+++|+|+|.+|+++||+|.++.+|.+.....           ..+++|.+.+++
T Consensus       151 v~~~~~~-~~-~~~~~w~~~~~~gGG~l~d~g~H~id~~~~l~G~~~~~v~~~~~~~-----------~~~~~d~~~~~l  217 (329)
T 3evn_A          151 ISSTTAY-PN-IDHVTWFRELELGGGTVHFMAPYALSYLQYLFDATITHASGTATFP-----------KGQSDSQSKLLL  217 (329)
T ss_dssp             EEEEEEC-TT-GGGSTTTTCGGGTCSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECC-----------TTSCCSEEEEEE
T ss_pred             EEEEecc-CC-CCCcccccCcccCCcHHHHHHHHHHHHHHHHhCCCceEEEEEEEeC-----------CCCcceEEEEEE
Confidence            9986543 22 3456888877889999999999999999999997788888876321           126789999999


Q ss_pred             EecCCcEEEEEEEEeecCCCCceEEEEEecCCeeeeecccce--eeeecccCCccceEEeeccCccccccCCCCCCCHHH
Q 017143          241 EFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESI--VRFATREAGREDVQTLKAEDDRIEYEGLHHGSSYLE  318 (376)
Q Consensus       241 ~~~~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (376)
                      +|+||.++++.+++..   ....+++|+|++|++.++.....  ..... ..+.  ...+         .....+.+..+
T Consensus       218 ~~~~G~~~~~~~s~~~---~~~~~~~i~G~~G~i~~~~~~~~~~~~~~~-~~g~--~~~~---------~~~~~~~~~~e  282 (329)
T 3evn_A          218 QLSNGVLVDIFLTTRL---NLPHEMIIYGTEGRLIIPHFWKTTHAKLVR-NDTS--ARTI---------QVDMVSDFEKE  282 (329)
T ss_dssp             EETTSCEEEEEEESSS---CCCCEEEEEETTEEEEEETTTSCSEEEEEE-SSSC--EEEE---------ECCCSCTTHHH
T ss_pred             EECCCCEEEEEEEccC---CCCCEEEEEeCceEEEECCCCCCCeEEEEE-CCCe--eEEE---------EcCCCCCCHHH
Confidence            9999999999887643   23458999999999998742211  11111 1111  1111         11123567889


Q ss_pred             HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCE
Q 017143          319 HLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRF  360 (376)
Q Consensus       319 l~~f~~~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~g~~  360 (376)
                      +++|+++|+++..+.+.++++++++++++++++++|++++++
T Consensus       283 ~~~f~~~i~~g~~~~~~~~~~~~l~~~~ii~ai~~s~~~~~~  324 (329)
T 3evn_A          283 AYHVSQMILEGQRVSHIMTPQLTLSGVKIIEDLYRSWGKEGH  324 (329)
T ss_dssp             HHHHHHHHHTTCSSCSSSCHHHHHHHHHHHHHHHHHTTCCC-
T ss_pred             HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHhhhccc
Confidence            999999998422236789999999999999999999998764

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=100.00  E-value=2.8e-56  Score=413.51  Aligned_cols=323  Identities=16%  Similarity=0.210  Sum_probs=266.8

Q ss_pred             CCCCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEE
Q 017143            1 MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         1 m~~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      |+ |+++||||||+|.+|..|++.+.+.  +++++++|||++++   +++++++++|++ +.|+|++++++++++|+|+|
T Consensus         1 M~-m~~~~igiiG~G~~g~~~~~~l~~~--~~~~l~av~d~~~~---~~~~~~~~~~~~-~~~~~~~~ll~~~~~D~V~i   73 (330)
T 3e9m_A            1 MS-LDKIRYGIMSTAQIVPRFVAGLRES--AQAEVRGIASRRLE---NAQKMAKELAIP-VAYGSYEELCKDETIDIIYI   73 (330)
T ss_dssp             ---CCCEEEEECSCCTTHHHHHHHHHHS--SSEEEEEEBCSSSH---HHHHHHHHTTCC-CCBSSHHHHHHCTTCSEEEE
T ss_pred             CC-CCeEEEEEECchHHHHHHHHHHHhC--CCcEEEEEEeCCHH---HHHHHHHHcCCC-ceeCCHHHHhcCCCCCEEEE
Confidence            55 3579999999999999999999998  89999999999988   678888999986 79999999999888999999


Q ss_pred             eCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEE
Q 017143           81 STPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKM  160 (376)
Q Consensus        81 ~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~  160 (376)
                      |||+..|.+++++||+  +||||+||||++.+.+|+++|.++++ ++|+.+++++++||.|.++.+|++|++|.||+|+.
T Consensus        74 ~tp~~~h~~~~~~al~--~gk~vl~EKP~~~~~~e~~~l~~~a~-~~g~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~  150 (330)
T 3e9m_A           74 PTYNQGHYSAAKLALS--QGKPVLLEKPFTLNAAEAEELFAIAQ-EQGVFLMEAQKSVFLPITQKVKATIQEGGLGEILW  150 (330)
T ss_dssp             CCCGGGHHHHHHHHHH--TTCCEEECSSCCSSHHHHHHHHHHHH-HTTCCEEECCSGGGCHHHHHHHHHHHTTTTCSEEE
T ss_pred             cCCCHHHHHHHHHHHH--CCCeEEEeCCCCCCHHHHHHHHHHHH-HcCCeEEEEEhhhhCHHHHHHHHHHhCCCCCCeEE
Confidence            9999999999999999  89999999999999999999999995 45999999999999999999999999999999999


Q ss_pred             EEEeeccCCcccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCccccCCCCCcccccEEEEE
Q 017143          161 VAIREHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIV  240 (376)
Q Consensus       161 ~~~~~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l  240 (376)
                      +++.+....  ..+.+|+.+...+||.++|+|+|.+|+++||+|.+|.+|++.....           ..+++|.+.+++
T Consensus       151 i~~~~~~~~--~~~~~w~~~~~~ggG~l~d~g~H~id~~~~l~G~~~~~v~a~~~~~-----------~~~~~d~~~~~l  217 (330)
T 3e9m_A          151 VQSVTAYPN--VDHIPWFYSREAGGGALHGSGSYPLQYLQYVLGKEIQEVTGTATYQ-----------QGATDSQCNLAL  217 (330)
T ss_dssp             EEEEEEESC--CTTCGGGGCTTTTCSHHHHHSHHHHHHHHHHHTCCEEEEEEEEEEC-----------SSSCEEEEEEEE
T ss_pred             EEEEecccC--CCCcCcccCcccCCCHHHHhhHHHHHHHHHHhCCCceEEEEEEEeC-----------CCCcceEEEEEE
Confidence            998654321  3457888887789999999999999999999998899999986321           126789999999


Q ss_pred             EecCCcEEEEEEEEeecCCCCceEEEEEecCCeeeeecccc--eeeeecccCCccceEEeeccCccccccCCCCCCCHHH
Q 017143          241 EFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPES--IVRFATREAGREDVQTLKAEDDRIEYEGLHHGSSYLE  318 (376)
Q Consensus       241 ~~~~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (376)
                      +|+||.++++.+++..+   ...+++|+|++|++.++....  .+..... .+..  ......         ....+..+
T Consensus       218 ~~~~G~~~~~~~s~~~~---~~~~~~i~G~~G~i~~~~~~~~~~~~~~~~-~g~~--~~~~~~---------~~~~~~~e  282 (330)
T 3e9m_A          218 KFAEGTLGNIFINVGLK---IPSEMTICGTKGQIVIPNFWKTDCAYYTDA-QGNT--VKWSEQ---------FTSEFTYE  282 (330)
T ss_dssp             EETTTEEEEEEEEESCC---CCCEEEEEETTEEEEEETTTTCSEEEEECS-SSCE--EEEECC---------CSCHHHHH
T ss_pred             EECCCCEEEEEEEeccC---CCCEEEEEeCceEEEECCCCCCCEEEEEEC-CCce--EEEEEc---------CCcccHHH
Confidence            99999999999887543   345899999999999854211  1222111 1110  011111         11226789


Q ss_pred             HHHHHHHHHhcCCC--CCCCCHHHHHHHHHHHHHHHHHHHcCCEEEe
Q 017143          319 HLNFLSAIRAKGAK--VPAVDLQDGLISVAIGVAAQLSIEKGRFIAI  363 (376)
Q Consensus       319 l~~f~~~i~~~~~~--~~~~~~~d~~~~~~ii~a~~~S~~~g~~v~~  363 (376)
                      +++|+++|+  ++.  .+.++++++++++++++++++|+.+++|...
T Consensus       283 ~~~f~~~i~--~g~~~~~~~~~~d~l~~~~i~~ai~~s~~~~~~~~~  327 (330)
T 3e9m_A          283 INHVNQCLQ--DKKLTSPVMTKELTIATVKIVESFYQEWFDNEGHHH  327 (330)
T ss_dssp             HHHHHHHHH--TTCSSCSSSCHHHHHHHHHHHHHHHHHHTCCC----
T ss_pred             HHHHHHHHH--cCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccc
Confidence            999999998  444  6779999999999999999999999988653

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=100.00  E-value=6.9e-57  Score=421.70  Aligned_cols=327  Identities=23%  Similarity=0.318  Sum_probs=265.4

Q ss_pred             CCCCceeEEEEeCChhhHHHHHHhh-hhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEE
Q 017143            2 AANDTVKYGIIGMGMMGREHFINLH-HLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         2 ~~~~~~~v~iiG~G~~g~~~~~~~~-~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      +.|+++||||||+|.+|..|++.+. ..  ++++|++|||++++   +++++++++|+.+..|+|++++++++++|+|+|
T Consensus        19 ~~m~~~rvgiIG~G~~g~~~~~~l~~~~--~~~~lvav~d~~~~---~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i   93 (357)
T 3ec7_A           19 FQGMTLKAGIVGIGMIGSDHLRRLANTV--SGVEVVAVCDIVAG---RAQAALDKYAIEAKDYNDYHDLINDKDVEVVII   93 (357)
T ss_dssp             ---CCEEEEEECCSHHHHHHHHHHHHTC--TTEEEEEEECSSTT---HHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEE
T ss_pred             cCCCeeeEEEECCcHHHHHHHHHHHhhC--CCcEEEEEEeCCHH---HHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEE
Confidence            3466899999999999999999998 66  89999999999998   677888899954468999999999988999999


Q ss_pred             eCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEE-EEeeccccCHHHHHHHHHHHcCCCCceE
Q 017143           81 STPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILV-QVGLEYRYMPPVAKLIQIVKSGSIGQVK  159 (376)
Q Consensus        81 ~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~-~v~~~~r~~p~~~~~k~~i~~g~iG~i~  159 (376)
                      |||+..|.+++++||+  +|||||||||++.+.+|+++|.+++++ +|+.+ ++++++||.|.++.+|++|++|.||+|.
T Consensus        94 ~tp~~~h~~~~~~al~--aGk~Vl~EKPla~~~~e~~~l~~~a~~-~g~~~~~v~~~~R~~p~~~~~k~~i~~g~iG~i~  170 (357)
T 3ec7_A           94 TASNEAHADVAVAALN--ANKYVFCEKPLAVTAADCQRVIEAEQK-NGKRMVQIGFMRRYDKGYVQLKNIIDSGEIGQPL  170 (357)
T ss_dssp             CSCGGGHHHHHHHHHH--TTCEEEEESSSCSSHHHHHHHHHHHHH-HTSCCEEEECGGGGSHHHHHHHHHHHHTTTCSEE
T ss_pred             cCCcHHHHHHHHHHHH--CCCCEEeecCccCCHHHHHHHHHHHHH-hCCeEEEEeecccCCHHHHHHHHHHhcCCCCCeE
Confidence            9999999999999999  999999999999999999999999955 48776 9999999999999999999999999999


Q ss_pred             EEEEeeccCCcccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCccccCCCCCcccccEEEE
Q 017143          160 MVAIREHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVI  239 (376)
Q Consensus       160 ~~~~~~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~  239 (376)
                      .++..+ +.+..  +.+|+     +||.++|+|+|.+|+++||+|.+|++|++.......        ...+++|.+.++
T Consensus       171 ~v~~~~-~~~~~--p~~w~-----ggg~l~d~g~H~iDl~~~l~G~~~~~V~a~~~~~~~--------~~~~~~D~~~~~  234 (357)
T 3ec7_A          171 MVHGRH-YNAST--VPEYK-----TPQAIYETLIHEIDVMHWLLNEDYKTVKVYFPRQSS--------LVTTLRDPQLVV  234 (357)
T ss_dssp             EEEEEE-ECSCC--CTTCC-----TTHHHHTTHHHHHHHHHHHHTCCEEEEEEECCSCCT--------TCCSSCCSEEEE
T ss_pred             EEEEEE-eCCCC--Ccccc-----CCchhhhcccHHHHHHHHHcCCCceEEEEEEecccc--------cCCCcceeEEEE
Confidence            998743 22221  23453     788999999999999999999779999988654321        123678999999


Q ss_pred             EEecCCcEEEEEEEEeecCCCCceEEEEEecCCeeeeecccceeeeecccCCccceEEeeccCccccccCCCCCCCHHHH
Q 017143          240 VEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAEDDRIEYEGLHHGSSYLEH  319 (376)
Q Consensus       240 l~~~~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  319 (376)
                      ++|+||.++++..++.... ....+++|+|++|++.++.... +.....    .+... ....   .+.....+.+..++
T Consensus       235 l~~~~G~~~~~~~s~~~~~-~~~~~~~i~G~~G~i~~~~~~~-~~~~~~----~~~~~-~~~~---~~~~~~~~~~~~~~  304 (357)
T 3ec7_A          235 METTSGINIVVEVFVNCQY-GYDIHCDVTGEKGMAELPTVAS-AAVRKA----AKYST-DILV---DWKQRFIDAYDIEF  304 (357)
T ss_dssp             EEETTCCEEEEEEETTCSS-CCEEEEEEEESSEEEECCCCCC-CEEEET----TEEEE-ECCC---CGGGTSHHHHHHHH
T ss_pred             EEECCCCEEEEEEEeccCC-CCCcEEEEEECCcEEEecCCCc-EEEEcC----CCccc-ccCC---cchhhhhHHHHHHH
Confidence            9999999999998765432 2345899999999999874332 222111    01100 0000   00111124566889


Q ss_pred             HHHHHHHHhcCC-CCCCCCHHHHHHHHHHHHHHHHHHHcCCEEEeh
Q 017143          320 LNFLSAIRAKGA-KVPAVDLQDGLISVAIGVAAQLSIEKGRFIAIE  364 (376)
Q Consensus       320 ~~f~~~i~~~~~-~~~~~~~~d~~~~~~ii~a~~~S~~~g~~v~~~  364 (376)
                      ++|+++|+  ++ .++.++++|+++++++++|+++|+++|++|.|+
T Consensus       305 ~~F~~~i~--~g~~~~~~~~~d~~~~~~i~~a~~~Sa~~G~~V~l~  348 (357)
T 3ec7_A          305 QDFFDRLN--AGLPPAGPTSWDGYLAAVTADACVKSQETGNTEIVE  348 (357)
T ss_dssp             HHHHHHHH--TTCCCCSSCHHHHHHHHHHHHHHHHHHHHSSCEECC
T ss_pred             HHHHHHHH--cCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCeEEEe
Confidence            99999998  66 778899999999999999999999999999996

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=100.00  E-value=3.5e-56  Score=416.68  Aligned_cols=334  Identities=18%  Similarity=0.254  Sum_probs=263.7

Q ss_pred             CCceeEEEEeCChhhHH-HHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeC
Q 017143            4 NDTVKYGIIGMGMMGRE-HFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~-~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t   82 (376)
                      ++++||||||+|.+|+. |++.+...  ++++|++|||+++++   ++   ++++. ++.|+|+++||+++++|+|+|||
T Consensus         5 ~~~~rvgiiG~G~~g~~~~~~~~~~~--~~~~l~av~d~~~~~---~~---~~~~~-~~~~~~~~~ll~~~~vD~V~i~t   75 (352)
T 3kux_A            5 ADKIKVGLLGYGYASKTFHAPLIMGT--PGLELAGVSSSDASK---VH---ADWPA-IPVVSDPQMLFNDPSIDLIVIPT   75 (352)
T ss_dssp             TCCEEEEEECCSHHHHHTHHHHHHTS--TTEEEEEEECSCHHH---HH---TTCSS-CCEESCHHHHHHCSSCCEEEECS
T ss_pred             cCCceEEEECCCHHHHHHHHHHHhhC--CCcEEEEEECCCHHH---HH---hhCCC-CceECCHHHHhcCCCCCEEEEeC
Confidence            35799999999999996 99999888  899999999999873   33   34433 36899999999999999999999


Q ss_pred             CCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEEE
Q 017143           83 PNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVA  162 (376)
Q Consensus        83 ~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~~  162 (376)
                      |+..|++++++||+  +||||+||||++.+.+|+++|.++|+ ++|+.+++++++||.|.++.+|++|++|.||+|..++
T Consensus        76 p~~~H~~~~~~al~--aGkhV~~EKPla~~~~e~~~l~~~a~-~~g~~~~v~~~~r~~p~~~~~~~~i~~g~iG~i~~~~  152 (352)
T 3kux_A           76 PNDTHFPLAQSALA--AGKHVVVDKPFTVTLSQANALKEHAD-DAGLLLSVFHNRRWDSDFLTLKTLLAEGSLGNVVYFE  152 (352)
T ss_dssp             CTTTHHHHHHHHHH--TTCEEEECSSCCSCHHHHHHHHHHHH-HTTCCEEECCGGGGCHHHHHHHHHHHHTTTCSEEEEE
T ss_pred             ChHHHHHHHHHHHH--CCCcEEEECCCcCCHHHHHHHHHHHH-HcCCeEEEEeecccCHHHHHHHHHHhcCCCCceEEEE
Confidence            99999999999999  99999999999999999999999995 4599999999999999999999999999999999999


Q ss_pred             EeeccCCcccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCccccCCCCCcccccEEEEEEe
Q 017143          163 IREHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEF  242 (376)
Q Consensus       163 ~~~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~  242 (376)
                      +.+.++.. ..+..|+.+...+||.++|+|+|.+|+++||+| +|++|++.......         ..+++|++.++|+|
T Consensus       153 ~~~~~~~~-~~~~~w~~~~~~ggG~l~d~g~H~id~~~~l~G-~p~~v~a~~~~~~~---------~~~~~d~~~~~l~~  221 (352)
T 3kux_A          153 SHFDRYRP-EIRQRWREQAGAGGGIWYDLGPHLLDQALQLFG-LPETLNVDLGMLRP---------GSQSVDYFHAVLSY  221 (352)
T ss_dssp             EEEECBCC-SSCSSCSCC---CBCHHHHHHHHHHHHHHHHHC-CCSEEEEEEECCST---------TCCSBCEEEEEEEE
T ss_pred             EEEeccCC-CCCcccccCCCCCCceeehhhhHHHHHHHHHhC-CCeEEEEEEEEecC---------CCCcccEEEEEEEE
Confidence            87544322 225678877778999999999999999999999 79999998753211         13678999999999


Q ss_pred             cCCcEEEEEEEEeecCCCCceEEEEEecCCeeeeecccce---eeeecc----cCC---ccceEEeeccCcc-ccccCCC
Q 017143          243 ENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESI---VRFATR----EAG---REDVQTLKAEDDR-IEYEGLH  311 (376)
Q Consensus       243 ~~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~~---~~~~~~----~~~---~~~~~~~~~~~~~-~~~~~~~  311 (376)
                       +|..+++..++..++.  ..+++|+|++|++.++..+..   +.....    ...   ..+.......... .......
T Consensus       222 -~g~~~~~~~s~~~~~~--~~~~~i~G~~G~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (352)
T 3kux_A          222 -PGQRVVLHSTVLAAAE--TARYIVHGTQGSYIKFGVDPQEDRLKAGERLPQADWGYDMRDGIVTLSHDNVLTEKPLLTL  298 (352)
T ss_dssp             -TTEEEEEEEESBCCSC--CCSEEEEESSEEEEECSCCSHHHHHHTTCCSCCTTTTCCCCCEEEEEESSSCEEEEEECCC
T ss_pred             -CCEEEEEEEEeecCCC--CCEEEEEeCCcEEEEeCCChhHHHHhcCCCCCCcccCcCCCCCeeEeccCCcceeeeccCC
Confidence             8899999988765432  347999999999986432211   000000    000   0011111111000 0111122


Q ss_pred             CCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCEEEehh
Q 017143          312 HGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAIEE  365 (376)
Q Consensus       312 ~~~~~~~l~~f~~~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~g~~v~~~~  365 (376)
                      .+.+..++++|+++|+  ++.++.+++++++++++|++|+++|+++|++|+|++
T Consensus       299 ~~~~~~~~~~f~~ai~--~~~~~~~~~~d~~~~~~i~~a~~~Sa~~g~~V~l~~  350 (352)
T 3kux_A          299 PGNYPAYYAGIRDAIW--GTAPNPVPATEAIKVMELIELGIASDQQKKALPIIA  350 (352)
T ss_dssp             CCCTHHHHHHHHHHHT--TSSCCSSBHHHHHHHHHHHHHHHHHHHHTSCEECCC
T ss_pred             CCCHHHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHHHHHHhcCCEEEeec
Confidence            3567789999999998  777788999999999999999999999999999964

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=100.00  E-value=1.6e-56  Score=427.25  Aligned_cols=340  Identities=22%  Similarity=0.275  Sum_probs=262.4

Q ss_pred             CCceeEEEEeCCh---hhHHHHHHhhhhcCCCcEEEE-EeCCChhhHHHHHHHHHhcCCC-CCccCCHHHHhhC-----C
Q 017143            4 NDTVKYGIIGMGM---MGREHFINLHHLRSQGVSVVC-IADPHLQSRQQALKLANAFDWP-LKVFPGHQELLDS-----G   73 (376)
Q Consensus         4 ~~~~~v~iiG~G~---~g~~~~~~~~~~~~~~~~~~~-v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~-----~   73 (376)
                      |+++||||||+|.   +|..|++++...  ++++|++ |||++++   +++++++++|++ .+.|+|+++||++     +
T Consensus        35 m~~~rvgiiG~G~~~~ig~~h~~~~~~~--~~~~lva~v~d~~~~---~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~  109 (417)
T 3v5n_A           35 QKRIRLGMVGGGSGAFIGAVHRIAARLD--DHYELVAGALSSTPE---KAEASGRELGLDPSRVYSDFKEMAIREAKLKN  109 (417)
T ss_dssp             CCCEEEEEESCC--CHHHHHHHHHHHHT--SCEEEEEEECCSSHH---HHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTT
T ss_pred             CCcceEEEEcCCCchHHHHHHHHHHhhC--CCcEEEEEEeCCCHH---HHHHHHHHcCCCcccccCCHHHHHhcccccCC
Confidence            5689999999998   999999998887  7899997 9999998   688889999985 3689999999998     7


Q ss_pred             CCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcC
Q 017143           74 LCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSG  153 (376)
Q Consensus        74 ~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g  153 (376)
                      ++|+|+|+||+..|++++++||+  +|||||||||++.+++|+++|.++++ ++|+.+++++++||.|.++++|++|++|
T Consensus       110 ~vD~V~I~tp~~~H~~~~~~al~--aGkhVl~EKPla~~~~ea~~l~~~a~-~~g~~~~v~~~~R~~p~~~~~k~~i~~G  186 (417)
T 3v5n_A          110 GIEAVAIVTPNHVHYAAAKEFLK--RGIHVICDKPLTSTLADAKKLKKAAD-ESDALFVLTHNYTGYPMVRQAREMIENG  186 (417)
T ss_dssp             CCSEEEECSCTTSHHHHHHHHHT--TTCEEEEESSSCSSHHHHHHHHHHHH-HCSSCEEEECGGGGSHHHHHHHHHHHTT
T ss_pred             CCcEEEECCCcHHHHHHHHHHHh--CCCeEEEECCCcCCHHHHHHHHHHHH-HcCCEEEEEecccCCHHHHHHHHHHhcC
Confidence            89999999999999999999999  99999999999999999999999995 5599999999999999999999999999


Q ss_pred             CCCceEEEEEeeccC--Ccc-----cccCccccccccC--CcccccccccHHHHHHHHhCCCCeEEEEecccccccCccc
Q 017143          154 SIGQVKMVAIREHRF--PFL-----VKVNDWNRFNENT--GGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEM  224 (376)
Q Consensus       154 ~iG~i~~~~~~~~~~--~~~-----~~~~~w~~~~~~~--gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~  224 (376)
                      .||+|+.+++.+...  ...     ..+..|+.+...+  ||+++|+|+|.+|+++||+|.+|++|++........    
T Consensus       187 ~iG~i~~v~~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~G~gG~l~d~g~H~lDl~~~l~G~~~~~V~a~~~~~~~~----  262 (417)
T 3v5n_A          187 DIGAVRLVQMEYPQDWLTENIEQSGQKQAAWRTDPARSGAGGSTGDIGTHAYNLGCFVSGLELEELAADLDSFVGG----  262 (417)
T ss_dssp             TTCSEEEEEEEEECCTTSCC--------------------CCHHHHTHHHHHHHHHHHHCCCEEEEEEEEECCSTT----
T ss_pred             CCCCeEEEEEEEecccccCccccccCCCcCcccCHHHcCCccHHHHHHHHHHHHHHHhcCCCceEEEEEEEecCCC----
Confidence            999999999875321  111     2346788776655  499999999999999999998899999987654321    


Q ss_pred             cCCCCCcccccEEEEEEecC----CcEEEEEEEEeecCCCCceEEEEEecCCeeeeecccc-eeeeecccCCccceEEee
Q 017143          225 YNGKVPDIIDNAYVIVEFEN----GSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPES-IVRFATREAGREDVQTLK  299 (376)
Q Consensus       225 ~~~~~~~~~d~~~~~l~~~~----G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~-~~~~~~~~~~~~~~~~~~  299 (376)
                           .+++|.+.++++|+|    |+++++..++..++.....+++|+|++|+++++.... .+.+......   ...+.
T Consensus       263 -----~~~~D~~~~~l~~~~~~~~G~~~~~~~s~~~~~~~~~~~~~i~Gt~G~l~~~~~~~~~l~~~~~~~~---~~~~~  334 (417)
T 3v5n_A          263 -----RQLDDNAHVLMRFREKDGTRAKGMLWCSQVAPGHENGLMVRVYGTKGGLEWTQKDPNYLWYTPFGEP---KRLLT  334 (417)
T ss_dssp             -----CCSCCEEEEEEEECCBTTBCCEEEEEEESCCTTCSSCCEEEEEESSEEEEEETTSTTEEEEEETTSC---EEEEE
T ss_pred             -----CCCceEEEEEEEECCCCCCCeEEEEEEEecccCCCCCeEEEEEecceEEEEccCCCCeEEEEeCCCC---cEEEe
Confidence                 247899999999999    9999999998776665667999999999999876432 2332211111   11111


Q ss_pred             ccCcc--------ccccCCCCC----CCHHHHHHHHHHHHhcC-CCCC-----CCCHHHHHHHHHHHHHHHHHHHc-CCE
Q 017143          300 AEDDR--------IEYEGLHHG----SSYLEHLNFLSAIRAKG-AKVP-----AVDLQDGLISVAIGVAAQLSIEK-GRF  360 (376)
Q Consensus       300 ~~~~~--------~~~~~~~~~----~~~~~l~~f~~~i~~~~-~~~~-----~~~~~d~~~~~~ii~a~~~S~~~-g~~  360 (376)
                      .....        ......+..    .|..++++|+++|++.. +.+|     .++++|+++++++++|+++|+++ |+|
T Consensus       335 ~~~~~~~~~~~~~~~~~~g~~~~~~~~f~~~~~~f~~ai~~~~~G~~p~~~~~~~~~~dg~~~~~i~~A~~~S~~~~g~~  414 (417)
T 3v5n_A          335 RAGAGASPAAARVSRIPSGHPEGYLEGFANIYSEAARAIYAKRNGGKADPSVIYPTIDDGMRGMTFVDACVRSSERNGAW  414 (417)
T ss_dssp             TTSTTCCHHHHTTCCSCTTSCCCHHHHHHHHHHHHHHHHHTTC----CCTTCCCCCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             cCCCccCchhhhhccCCCCCCccHHHHHHHHHHHHHHHHHhhccCCCCcccCCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            11100        011111112    23467899999998421 2222     58999999999999999999999 899


Q ss_pred             EEe
Q 017143          361 IAI  363 (376)
Q Consensus       361 v~~  363 (376)
                      |+|
T Consensus       415 V~v  417 (417)
T 3v5n_A          415 IKV  417 (417)
T ss_dssp             BC-
T ss_pred             eeC
Confidence            865

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=100.00  E-value=8.9e-57  Score=419.82  Aligned_cols=323  Identities=19%  Similarity=0.208  Sum_probs=263.0

Q ss_pred             CCCCceeEEEEeCChhhH-HHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEE
Q 017143            2 AANDTVKYGIIGMGMMGR-EHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         2 ~~~~~~~v~iiG~G~~g~-~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      ++|+++||||||+|.+|. .|++.+.+.  ++++|++|||++++   +++++++++|++  .|+|++++++++++|+|+|
T Consensus        23 ~~m~~~rigiIG~G~~g~~~~~~~l~~~--~~~~l~av~d~~~~---~~~~~a~~~g~~--~~~~~~~ll~~~~~D~V~i   95 (350)
T 3rc1_A           23 ANANPIRVGVIGCADIAWRRALPALEAE--PLTEVTAIASRRWD---RAKRFTERFGGE--PVEGYPALLERDDVDAVYV   95 (350)
T ss_dssp             ---CCEEEEEESCCHHHHHTHHHHHHHC--TTEEEEEEEESSHH---HHHHHHHHHCSE--EEESHHHHHTCTTCSEEEE
T ss_pred             CCCCceEEEEEcCcHHHHHHHHHHHHhC--CCeEEEEEEcCCHH---HHHHHHHHcCCC--CcCCHHHHhcCCCCCEEEE
Confidence            456789999999999998 799999988  89999999999988   678889999976  7799999999989999999


Q ss_pred             eCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEE
Q 017143           81 STPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKM  160 (376)
Q Consensus        81 ~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~  160 (376)
                      |||+..|++++++||+  +||||+||||++.+++|+++|.+++++ +|+.+++++++||.|.++.+|++|++|.||+|+.
T Consensus        96 ~tp~~~h~~~~~~al~--aGk~Vl~EKP~a~~~~ea~~l~~~a~~-~g~~~~v~~~~R~~p~~~~~k~~i~~G~iG~i~~  172 (350)
T 3rc1_A           96 PLPAVLHAEWIDRALR--AGKHVLAEKPLTTDRPQAERLFAVARE-RGLLLMENFMFLHHPQHRQVADMLDEGVIGEIRS  172 (350)
T ss_dssp             CCCGGGHHHHHHHHHH--TTCEEEEESSSCSSHHHHHHHHHHHHH-TTCCEEEECGGGGCTHHHHHHHHHHTTTTCSEEE
T ss_pred             CCCcHHHHHHHHHHHH--CCCcEEEeCCCCCCHHHHHHHHHHHHH-hCCEEEEEecccCCHHHHHHHHHHhcCCCCCeEE
Confidence            9999999999999999  999999999999999999999999955 5999999999999999999999999999999999


Q ss_pred             EEEeeccCCcccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCccccCCCCCcccccEEEEE
Q 017143          161 VAIREHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIV  240 (376)
Q Consensus       161 ~~~~~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l  240 (376)
                      +++.+....  ..+.+|+.+...+||+++|+|+|.+|+++||+|.+|++|++......          ..+++|.+.++|
T Consensus       173 v~~~~~~~~--~~~~~wr~~~~~gGG~l~d~g~H~ld~~~~l~G~~~~~v~a~~~~~~----------~~~~d~~~~~~l  240 (350)
T 3rc1_A          173 FAASFTIPP--KPQGDIRYQADVGGGALLDIGVYPIRAAGLFLGADLEFVGAVLRHER----------DRDVVVGGNALL  240 (350)
T ss_dssp             EEEEEECCC--CCTTCGGGCTTTTCHHHHHTTHHHHHHHHHHHCTTCEEEEEEEEEET----------TTTEEEEEEEEE
T ss_pred             EEEEEecCC--CCccccccCcccCccHHHHHHHHHHHHHHHHcCCCcEEEEEEEEeCC----------CCCccceEEEEE
Confidence            998755422  34578887777899999999999999999999988999998754321          126789999999


Q ss_pred             EecCCcEEEEEEEEeecCCCCceEEEEEecCCeeeeecccceeeeecccCCccceEEeeccCccccccCCCCCCCHHHHH
Q 017143          241 EFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAEDDRIEYEGLHHGSSYLEHL  320 (376)
Q Consensus       241 ~~~~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  320 (376)
                      +|+||.++++.+++.   .....+++|+|++|++.++......      ........+..............+.+..+++
T Consensus       241 ~~~~G~~~~~~~s~~---~~~~~~~~i~G~~G~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  311 (350)
T 3rc1_A          241 TTRQGVTAQLTFGME---HAYTNNYEFRGSTGRLWMNRVFTPP------ATYQPVVHIERQDHAEQFVLPAHDQFAKSIR  311 (350)
T ss_dssp             ECTTCCEEEEEEESS---SCCEEEEEEEESSCEEEEESCSCCC------TTCCCEEEEEETTEEEEEECCCCCHHHHHHH
T ss_pred             EECCCCEEEEEEecC---CCCCCEEEEEeCCEEEEECcccCCC------CCCceEEEEecCCceEEEEcCCccHHHHHHH
Confidence            999999999988764   2344589999999999987521100      0000000000001000111112245678999


Q ss_pred             HHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Q 017143          321 NFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEK  357 (376)
Q Consensus       321 ~f~~~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~  357 (376)
                      +|+++|+  ++.++.+++++++++++|++|+++|+++
T Consensus       312 ~f~~~i~--~g~~~~~~~~dal~~~~ii~ai~~Sa~~  346 (350)
T 3rc1_A          312 AFAQAVL--SGEHPREWSEDSLRQASLVDAVRTGARD  346 (350)
T ss_dssp             HHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHSEE
T ss_pred             HHHHHHH--cCCCCCCCHHHHHHHHHHHHHHHHHhhh
Confidence            9999998  5566779999999999999999999865

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=100.00  E-value=2e-56  Score=417.17  Aligned_cols=324  Identities=22%  Similarity=0.341  Sum_probs=264.5

Q ss_pred             ceeEEEEeCChhhHHHHHHhh-hhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLH-HLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~-~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      ++||||||+|.+|..|++.+. ..  ++++|++|||++++   +++++++++|+++..|+|++++++++++|+|+||||+
T Consensus         2 ~~rigiIG~G~~g~~~~~~l~~~~--~~~~l~av~d~~~~---~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~   76 (344)
T 3mz0_A            2 SLRIGVIGTGAIGKEHINRITNKL--SGAEIVAVTDVNQE---AAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWG   76 (344)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTC--SSEEEEEEECSSHH---HHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCG
T ss_pred             eEEEEEECccHHHHHHHHHHHhhC--CCcEEEEEEcCCHH---HHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCc
Confidence            589999999999999999998 66  89999999999988   6788888999644689999999999899999999999


Q ss_pred             CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEE-EEeeccccCHHHHHHHHHHHcCCCCceEEEEE
Q 017143           85 MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILV-QVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAI  163 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~-~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~~~  163 (376)
                      ..|.+++++||+  +||||+||||++.+.+|+++|.+++++ +|+.+ ++++++||.|.++.+|++|++|.||+|..++.
T Consensus        77 ~~h~~~~~~al~--~Gk~vl~EKP~a~~~~e~~~l~~~a~~-~g~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~v~~  153 (344)
T 3mz0_A           77 PAHESSVLKAIK--AQKYVFCEKPLATTAEGCMRIVEEEIK-VGKRLVQVGFMRRYDSGYVQLKEALDNHVIGEPLMIHC  153 (344)
T ss_dssp             GGHHHHHHHHHH--TTCEEEECSCSCSSHHHHHHHHHHHHH-HSSCCEEECCGGGGSHHHHHHHHHHHTTTTSSEEEEEE
T ss_pred             hhHHHHHHHHHH--CCCcEEEcCCCCCCHHHHHHHHHHHHH-HCCEEEEEecccccCHHHHHHHHHHHcCCCCCcEEEEE
Confidence            999999999999  999999999999999999999999955 58877 99999999999999999999999999999988


Q ss_pred             eeccCCcccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCccccCCCCCcccccEEEEEEec
Q 017143          164 REHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFE  243 (376)
Q Consensus       164 ~~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~  243 (376)
                      .+ +.+..  +.+|+     +||.++|+|+|.+|+++||+|.+|++|++........       ...+.+|.+.++++|+
T Consensus       154 ~~-~~~~~--~~~w~-----ggg~l~d~g~H~id~~~~l~G~~~~~V~a~~~~~~~~-------~~~~~~D~~~~~l~~~  218 (344)
T 3mz0_A          154 AH-RNPTV--GDNYT-----TDMAVVDTLVHEIDVLHWLVNDDYESVQVIYPKKSKN-------ALPHLKDPQIVVIETK  218 (344)
T ss_dssp             EE-ECSCC--CTTCC-----TTHHHHTTTHHHHHHHHHHHTCCEEEEEEECCSCCTT-------SCTTCCCSEEEEEEET
T ss_pred             Ee-cCCCC--Ccccc-----CCchhhhhhhHHHHHHHHhcCCCcEEEEEEEeccccc-------cCCCCCceEEEEEEEC
Confidence            53 22222  23453     7889999999999999999997799999886543221       1236789999999999


Q ss_pred             CCcEEEEEEEEeecCCCCceEEEEEecCCeeeeecccceeeeecccCCccceEEeeccCccccccCCCCCCCHHHHHHHH
Q 017143          244 NGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAEDDRIEYEGLHHGSSYLEHLNFL  323 (376)
Q Consensus       244 ~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~  323 (376)
                      ||.+++++.++.... ....+++|+|++|++.++.... +.+...    .+... ....   .+.....+.+..++++|+
T Consensus       219 ~G~~~~~~~s~~~~~-~~~~~~~i~G~~G~i~~~~~~~-~~~~~~----~~~~~-~~~~---~~~~~~~~~~~~~~~~f~  288 (344)
T 3mz0_A          219 GGIVINAEIYVNCKY-GYDIQCEIVGEDGIIKLPEPSS-ISLRKE----GRFST-DILM---DWQRRFVAAYDVEIQDFI  288 (344)
T ss_dssp             TCCEEEEEEETTCSS-CCEEEEEEEESSCEEECCCCCC-CEEEET----TEEEE-CCCS---CHHHHSHHHHHHHHHHHH
T ss_pred             CCCEEEEEEEeccCC-CCcceEEEEeCCCEEEEcCCCc-EEEEeC----CCccc-cccC---chhhhhhHHHHHHHHHHH
Confidence            999999998875432 2345899999999999874332 222110    01100 0000   000111245667899999


Q ss_pred             HHH-HhcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCEEEeh
Q 017143          324 SAI-RAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAIE  364 (376)
Q Consensus       324 ~~i-~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~g~~v~~~  364 (376)
                      ++| +  ++.++.++++|+++++++++|+++|+++|++|+++
T Consensus       289 ~~i~~--~g~~~~~~~~d~~~~~~i~~a~~~Sa~~g~~V~l~  328 (344)
T 3mz0_A          289 DSIQK--KGEVSGPTAWDGYIAAVTTDACVKAQESGQKEKVE  328 (344)
T ss_dssp             HHHHH--HSSCCSSCHHHHHHHHHHHHHHHHHHHHCSCEECC
T ss_pred             HHHHh--CCCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEEEe
Confidence            999 8  56677899999999999999999999999999996

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=100.00  E-value=5.6e-56  Score=415.96  Aligned_cols=323  Identities=16%  Similarity=0.216  Sum_probs=257.8

Q ss_pred             CCCceeEEEEeCChhhH-HHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEe
Q 017143            3 ANDTVKYGIIGMGMMGR-EHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         3 ~~~~~~v~iiG~G~~g~-~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~   81 (376)
                      ||+++||||||+|.++. .|++.+. .  ++++|++|||++++   ++++++++|+.. +.|+|+++||+++++|+|+|+
T Consensus        23 Mm~~irvgiiG~G~~~~~~~~~~~~-~--~~~~lvav~d~~~~---~a~~~a~~~~~~-~~~~~~~~ll~~~~vD~V~I~   95 (361)
T 3u3x_A           23 MMDELRFAAVGLNHNHIYGQVNCLL-R--AGARLAGFHEKDDA---LAAEFSAVYADA-RRIATAEEILEDENIGLIVSA   95 (361)
T ss_dssp             ---CCEEEEECCCSTTHHHHHHHHH-H--TTCEEEEEECSCHH---HHHHHHHHSSSC-CEESCHHHHHTCTTCCEEEEC
T ss_pred             hccCcEEEEECcCHHHHHHHHHHhh-c--CCcEEEEEEcCCHH---HHHHHHHHcCCC-cccCCHHHHhcCCCCCEEEEe
Confidence            45679999999999986 4666665 4  79999999999998   788889999864 799999999999999999999


Q ss_pred             CCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeecccc-CHHHHHHHHHHHcCCCCceEE
Q 017143           82 TPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRY-MPPVAKLIQIVKSGSIGQVKM  160 (376)
Q Consensus        82 t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~-~p~~~~~k~~i~~g~iG~i~~  160 (376)
                      ||+..|++++++||+  +|||||||||++.+++|+++|+++| +++|+.+++++++|| .|.++.+|++|++|.||+|..
T Consensus        96 tp~~~H~~~~~~al~--aGkhVl~EKPla~~~~ea~~l~~~a-~~~g~~l~v~~~~R~~~p~~~~~k~~i~~g~iG~i~~  172 (361)
T 3u3x_A           96 AVSSERAELAIRAMQ--HGKDVLVDKPGMTSFDQLAKLRRVQ-AETGRIFSILYSEHFESPATVKAGELVAAGAIGEVVH  172 (361)
T ss_dssp             CCHHHHHHHHHHHHH--TTCEEEEESCSCSSHHHHHHHHHHH-HTTCCCEEEECHHHHTCHHHHHHHHHHHTTTTSSEEE
T ss_pred             CChHHHHHHHHHHHH--CCCeEEEeCCCCCCHHHHHHHHHHH-HHcCCEEEEechHhhCCHHHHHHHHHHHcCCCCCeEE
Confidence            999999999999999  9999999999999999999999999 566999999999999 599999999999999999999


Q ss_pred             EEEeeccCCcccccCccccccccCCcccccccccHHHHHHHHhCCCCe-EEEEecccccccCccccCCCCCcccccEEEE
Q 017143          161 VAIREHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPM-RVMASGAVDVNHKDEMYNGKVPDIIDNAYVI  239 (376)
Q Consensus       161 ~~~~~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~-~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~  239 (376)
                      ++..+........+..|+.+...+||+++|+|+|.+|+++||+|.++. .|++........       ...+++|.+.++
T Consensus       173 ~~~~~~~~~~~~~~~~w~~~~~~~GG~l~d~g~H~iD~~~~l~G~~~~~~v~a~~~~~~~~-------~~~~~~d~~~~~  245 (361)
T 3u3x_A          173 IVGLGPHRLRRETRPDWFFRRADYGGILTDIASHQCEQFLFFTGVNDATVLSASVGNQSVP-------DAPELQDTGSIH  245 (361)
T ss_dssp             EEEEEECCCCGGGSCGGGTCHHHHCCHHHHHSHHHHHHHHHHHCCSCCEEEEEEEECCSCT-------TSTTSCCEEEEE
T ss_pred             EEEecccccCCCCCCCcccCcCccCchHHhhhhHHHHHHHHHhCCCCeEEEEEEeecccCC-------CCCCCCceEEEE
Confidence            988543322233457888777788999999999999999999997554 478775543211       123688999999


Q ss_pred             EEecCCcEEEEEEEEeecCCCC---ceEEEEEecCCeeeeeccc--------ceeeeecccCCccceEEeeccCcccccc
Q 017143          240 VEFENGSRGMLDLCMFAEGSKN---EQEIVVVGNTGKGEAFVPE--------SIVRFATREAGREDVQTLKAEDDRIEYE  308 (376)
Q Consensus       240 l~~~~G~~~~l~~~~~~~~~~~---~~~~~i~Gt~G~i~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (376)
                      |+|+||. +++..+|..+....   ..+++|+|++|++.++...        ..+....    ..+......        
T Consensus       246 l~~~~G~-~~~~~s~~~~~~~~~~~~~~~~i~G~~G~i~~~~~~~~~~~~~~~~l~~~~----~~g~~~~~~--------  312 (361)
T 3u3x_A          246 LSTGRTT-GMIHVNWLTPEGMPTWGDGRLFIVGTSGTIEVRKTVDLAGREGGNHLFLAD----RNGVEHIDC--------  312 (361)
T ss_dssp             EECSSCE-EEEEEESCCCTTCSSSCCCEEEEEESSCEEEEECSCCTTSSSSSCEEEEEC----SSCEEEEEC--------
T ss_pred             EEECCce-EEEEEEeecCCCCCCCCCceEEEEeCCeEEEEeccccccccCCCceEEEEC----CCCceecCc--------
Confidence            9999999 99999887654332   4589999999999986321        1111111    011111111        


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCE
Q 017143          309 GLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRF  360 (376)
Q Consensus       309 ~~~~~~~~~~l~~f~~~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~g~~  360 (376)
                         ...+..++++|+++|+  ++.++.++.+|+++++++++|+++|+++.++
T Consensus       313 ---~~~~~~~~~~F~~ai~--~~~~~~~~~~d~l~~l~i~~a~~~Sa~~~~~  359 (361)
T 3u3x_A          313 ---SRVDLPFGRQFLADIR--DRTETAMPQERCFKAMELALQAQAIAEQNGD  359 (361)
T ss_dssp             ---TTSCCTHHHHHHHHHH--HSCCSSSCHHHHHHHHHHHHHHHHHHC----
T ss_pred             ---cccCChHHHHHHHHHH--cCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence               1223357899999999  5667889999999999999999999998664

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=100.00  E-value=1.3e-56  Score=418.47  Aligned_cols=335  Identities=25%  Similarity=0.395  Sum_probs=268.9

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ++||||||+|.+|..|++.+.+.  +++++++|||++++   ++++++++++++ +.|+|++++++++++|+|+||||+.
T Consensus         2 ~~rvgiIG~G~~g~~~~~~l~~~--~~~~l~av~d~~~~---~~~~~~~~~~~~-~~~~~~~~ll~~~~~D~V~i~tp~~   75 (344)
T 3ezy_A            2 SLRIGVIGLGRIGTIHAENLKMI--DDAILYAISDVRED---RLREMKEKLGVE-KAYKDPHELIEDPNVDAVLVCSSTN   75 (344)
T ss_dssp             CEEEEEECCSHHHHHHHHHGGGS--TTEEEEEEECSCHH---HHHHHHHHHTCS-EEESSHHHHHHCTTCCEEEECSCGG
T ss_pred             eeEEEEEcCCHHHHHHHHHHHhC--CCcEEEEEECCCHH---HHHHHHHHhCCC-ceeCCHHHHhcCCCCCEEEEcCCCc
Confidence            58999999999999999999987  89999999999998   677888899985 7899999999988899999999999


Q ss_pred             ccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEEEEee
Q 017143           86 THYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIRE  165 (376)
Q Consensus        86 ~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~~~~~  165 (376)
                      .|.+++++|++  +||||+||||++.+.+++++|.+++++ +|+.+++++++||.|.++.+|++|++|.||+|..+++.+
T Consensus        76 ~h~~~~~~al~--~gk~v~~EKP~~~~~~e~~~l~~~a~~-~g~~~~v~~~~R~~p~~~~~k~~i~~G~iG~i~~~~~~~  152 (344)
T 3ezy_A           76 THSELVIACAK--AKKHVFCEKPLSLNLADVDRMIEETKK-ADVILFTGFNRRFDRNFKKLKEAVENGTIGKPHVLRITS  152 (344)
T ss_dssp             GHHHHHHHHHH--TTCEEEEESCSCSCHHHHHHHHHHHHH-HTCCEEEECGGGGCHHHHHHHHHHHTTTTSSEEEEEEEE
T ss_pred             chHHHHHHHHh--cCCeEEEECCCCCCHHHHHHHHHHHHH-hCCcEEEeecccCCHHHHHHHHHHHcCCCCCeEEEEEEe
Confidence            99999999999  999999999999999999999999954 599999999999999999999999999999999999853


Q ss_pred             ccCCcccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCccccCCCCCcccccEEEEEEecCC
Q 017143          166 HRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENG  245 (376)
Q Consensus       166 ~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~G  245 (376)
                      . .+.   +++|. +...+||.++|+|+|.+|+++||+|.+|++|++...........     ..+.+|.+.++++|+||
T Consensus       153 ~-~~~---~~~~~-~~~~~GG~l~d~g~H~lDl~~~l~G~~~~~V~a~~~~~~~~~~~-----~~~~~D~~~~~l~~~~G  222 (344)
T 3ezy_A          153 R-DPA---PPPLD-YIRVSGGIFLDMTIHDFDMARYIMGEEVEEVFADGSVLVDEEIG-----KAGDVDTAVVVLRFKSG  222 (344)
T ss_dssp             E-CSS---CCCHH-HHHTTTCHHHHTHHHHHHHHHHHHSSCEEEEEEEEECCSCHHHH-----HTTCCSEEEEEEEETTS
T ss_pred             e-CCC---CCCcc-cccCCCceEecccchHHHHHHHHcCCCCeEEEEEeccccccccc-----cCCCCceEEEEEEECCC
Confidence            2 221   23343 33478999999999999999999998899999987654321110     01235889999999999


Q ss_pred             cEEEEEEEEeecCCCCceEEEEEecCCeeeeecccc-eeeeecccCCccceEEeeccCccccccCCCCCCCHHHHHHHHH
Q 017143          246 SRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPES-IVRFATREAGREDVQTLKAEDDRIEYEGLHHGSSYLEHLNFLS  324 (376)
Q Consensus       246 ~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~  324 (376)
                      .++++..++.... ....+++|+|++|++.++.... .+.....    .+....   .....+.....+.+..++++|++
T Consensus       223 ~~~~~~~s~~~~~-~~~~~~~i~G~~G~i~~~~~~~~~~~~~~~----~g~~~~---~~~~~~~~~~~~~~~~~~~~f~~  294 (344)
T 3ezy_A          223 ALGVIDNSRRAVY-GYDQRIEVFGSKGRIFADNVRETTVVLTDE----QGDRGS---RYLYFFLERYRDSYLEELKTFIK  294 (344)
T ss_dssp             CEEEEEEESCCTT-SCEEEEEEEETTEEEEECCCBSCSEEEEET----TEEEEC---CBCCSHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEecccCC-CCceEEEEEECcEEEEEccCCCceEEEEcC----CCcccC---CCccchhhhhhHHHHHHHHHHHH
Confidence            9999998875432 2346899999999999875322 1222111    111100   00000000012345678999999


Q ss_pred             HHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCEEEehhhhhh
Q 017143          325 AIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAIEEVMEE  369 (376)
Q Consensus       325 ~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~g~~v~~~~~~~~  369 (376)
                      +|+  ++.++.++++++++++++++|+++|+++|++|+|+....+
T Consensus       295 ~i~--~~~~~~~~~~~~~~~~~i~~a~~~S~~~g~~V~~~~~~~~  337 (344)
T 3ezy_A          295 NVK--SGEPPAVSGEDGKMALLLGYAAKKSLEEKRSVKLEEVIGE  337 (344)
T ss_dssp             HHH--HTCCCSSCHHHHHHHHHHHHHHHHHHHHTBCEEGGGTC--
T ss_pred             HHh--cCCCCCCCHHHHHHHHHHHHHHHHHHHhCCeEEeccccCC
Confidence            999  6667889999999999999999999999999999876543

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=100.00  E-value=4.6e-56  Score=416.47  Aligned_cols=337  Identities=21%  Similarity=0.264  Sum_probs=258.6

Q ss_pred             CCCCCceeEEEEeCChhhHH-HHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEE
Q 017143            1 MAANDTVKYGIIGMGMMGRE-HFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVV   79 (376)
Q Consensus         1 m~~~~~~~v~iiG~G~~g~~-~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~   79 (376)
                      |++ +++||||||+|.+|.. |++.+...  ++++|++|||+++++      ++++++. ++.|+|+++||+++++|+|+
T Consensus         1 M~m-~~~rvgiiG~G~~g~~~~~~~l~~~--~~~~l~av~d~~~~~------~~~~~~~-~~~~~~~~~ll~~~~vD~V~   70 (358)
T 3gdo_A            1 MSL-DTIKVGILGYGLSGSVFHGPLLDVL--DEYQISKIMTSRTEE------VKRDFPD-AEVVHELEEITNDPAIELVI   70 (358)
T ss_dssp             -CT-TCEEEEEECCSHHHHHTTHHHHTTC--TTEEEEEEECSCHHH------HHHHCTT-SEEESSTHHHHTCTTCCEEE
T ss_pred             CCC-CcceEEEEccCHHHHHHHHHHHhhC--CCeEEEEEEcCCHHH------HHhhCCC-CceECCHHHHhcCCCCCEEE
Confidence            543 5799999999999996 99999888  899999999999862      3456643 36999999999998999999


Q ss_pred             EeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceE
Q 017143           80 VSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVK  159 (376)
Q Consensus        80 i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~  159 (376)
                      ||||+..|++++++||+  +||||+||||++.+++|+++|.++|+ ++|+.+++++++||.|.++.+|++|++|.||+|.
T Consensus        71 i~tp~~~H~~~~~~al~--aGkhVl~EKPla~~~~e~~~l~~~a~-~~g~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~  147 (358)
T 3gdo_A           71 VTTPSGLHYEHTMACIQ--AGKHVVMEKPMTATAEEGETLKRAAD-EKGVLLSVYHNRRWDNDFLTIKKLISEGSLEDIN  147 (358)
T ss_dssp             ECSCTTTHHHHHHHHHH--TTCEEEEESSCCSSHHHHHHHHHHHH-HHTCCEEEECGGGGSHHHHHHHHHHHTTSSCSCC
T ss_pred             EcCCcHHHHHHHHHHHH--cCCeEEEecCCcCCHHHHHHHHHHHH-HcCCeEEEeeecccCHHHHHHHHHHhcCCCCceE
Confidence            99999999999999999  99999999999999999999999995 4599999999999999999999999999999999


Q ss_pred             EEEEeeccCCcccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCccccCCCCCcccccEEEE
Q 017143          160 MVAIREHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVI  239 (376)
Q Consensus       160 ~~~~~~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~  239 (376)
                      .+++.+.+.. ......|+.+...+||+++|+|+|.+|+++||+| +|++|++.......         ..+++|.+.++
T Consensus       148 ~~~~~~~~~~-~~~~~~w~~~~~~ggG~l~d~g~H~id~~~~l~G-~~~~V~a~~~~~~~---------~~~~~d~~~~~  216 (358)
T 3gdo_A          148 TYQVSYNRYR-PEVQARWREKEGTATGTLYDLGSHIIDQTLHLFG-MPKAVTANVMAQRE---------NAETVDYFHLT  216 (358)
T ss_dssp             EEEEECCCBC-CCC----------CCSHHHHTHHHHHHHHHHHHC-CCSEEEEEEECCST---------TCCSCCEEEEE
T ss_pred             EEEEEEeccC-CCCCcccccCCCCCCceeeeehhHHHHHHHHHcC-CCeEEEEEEEeecC---------CCCcCceEEEE
Confidence            9998654432 2234568877778999999999999999999999 89999998654211         13678999999


Q ss_pred             EEecCCcEEEEEEEEeecCCCCceEEEEEecCCeeeeeccccee-ee--eccc----CC---cc--ceEEeeccCc-ccc
Q 017143          240 VEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIV-RF--ATRE----AG---RE--DVQTLKAEDD-RIE  306 (376)
Q Consensus       240 l~~~~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~~~-~~--~~~~----~~---~~--~~~~~~~~~~-~~~  306 (376)
                      |+|+| ..+++..++..+.  ...+++|+|++|++.++..+... .+  ....    ..   ..  +......... ...
T Consensus       217 l~~~~-~~~~~~~s~~~~~--~~~~~~i~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  293 (358)
T 3gdo_A          217 LDYGK-LQAILYGGSIVPA--NGPRYQIHGKDSSFIKYGIDGQEDALRAGRKPEDDSWGADVPEFYGKLTTIRGSDKKTE  293 (358)
T ss_dssp             EEETT-EEEEEEECSBCSS--CCCSEEEECSSEEEEECCCCSHHHHHHTTCCCCSTTTTCCCGGGCEEEEEEETTEEEEE
T ss_pred             EEECC-EEEEEEEEeccCC--CCCEEEEEeCceEEEEeCCChHHHHHhcCCCCCccccCcCcccccceEEecCCCceeee
Confidence            99999 8888887776543  23479999999999875432210 00  0000    00   00  0011000000 001


Q ss_pred             ccCCCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCEEEehhh
Q 017143          307 YEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAIEEV  366 (376)
Q Consensus       307 ~~~~~~~~~~~~l~~f~~~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~g~~v~~~~~  366 (376)
                      ......+.+..++++|+++|+  ++.++.++++|++++++|++|+++|+++|++|.++..
T Consensus       294 ~~~~~~~~~~~~~~~f~~ai~--~g~~~~~~~~da~~~~~i~~a~~~Sa~~g~~V~~~~~  351 (358)
T 3gdo_A          294 TIPSVNGSYLTYYRKIAESIR--EGAALPVTAEEGINVIRIIEAAMESSKEKRTIMLEHE  351 (358)
T ss_dssp             EECCCCCCTHHHHHHHHHHHH--HCCCCSSCHHHHHHHHHHHHHHHHHHHHTBCEECC--
T ss_pred             eecCCCCcHHHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHHHHHHhcCCEEEeeec
Confidence            111234567889999999999  6677889999999999999999999999999998654

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=100.00  E-value=8.2e-56  Score=415.49  Aligned_cols=336  Identities=20%  Similarity=0.284  Sum_probs=256.1

Q ss_pred             CCC-CCceeEEEEeCChhhHH-HHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEE
Q 017143            1 MAA-NDTVKYGIIGMGMMGRE-HFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVV   78 (376)
Q Consensus         1 m~~-~~~~~v~iiG~G~~g~~-~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V   78 (376)
                      |++ ++++||||||+|.+|+. |++.+...  ++++|++|||+++++   ++   ++++. ++.|+|+++||+++++|+|
T Consensus         1 M~~~~~~~rvgiiG~G~~g~~~~~~~l~~~--~~~~l~av~d~~~~~---~~---~~~~~-~~~~~~~~~ll~~~~~D~V   71 (364)
T 3e82_A            1 MSLSNNTINIALIGYGFVGKTFHAPLIRSV--PGLNLAFVASRDEEK---VK---RDLPD-VTVIASPEAAVQHPDVDLV   71 (364)
T ss_dssp             ------CEEEEEECCSHHHHHTHHHHHHTS--TTEEEEEEECSCHHH---HH---HHCTT-SEEESCHHHHHTCTTCSEE
T ss_pred             CCCCCCcceEEEECCCHHHHHHHHHHHhhC--CCeEEEEEEcCCHHH---HH---hhCCC-CcEECCHHHHhcCCCCCEE
Confidence            544 45799999999999996 99999888  899999999999873   32   34443 3689999999999899999


Q ss_pred             EEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCce
Q 017143           79 VVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQV  158 (376)
Q Consensus        79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i  158 (376)
                      +||||+..|++++++||+  +||||+||||++.+.+|+++|.++++ ++|+.+++++++||.|.++.+|++|++|.||+|
T Consensus        72 ~i~tp~~~H~~~~~~al~--aGk~Vl~EKPla~~~~e~~~l~~~a~-~~g~~~~v~~~~r~~p~~~~~~~~i~~g~iG~i  148 (364)
T 3e82_A           72 VIASPNATHAPLARLALN--AGKHVVVDKPFTLDMQEARELIALAE-EKQRLLSVFHNRRWDSDYLGIRQVIEQGTLGAV  148 (364)
T ss_dssp             EECSCGGGHHHHHHHHHH--TTCEEEECSCSCSSHHHHHHHHHHHH-HTTCCEEECCCCTTCHHHHHHHHHHHHTTTCSE
T ss_pred             EEeCChHHHHHHHHHHHH--CCCcEEEeCCCcCCHHHHHHHHHHHH-HhCCeEEEEeecccCHHHHHHHHHHHcCCCcce
Confidence            999999999999999999  99999999999999999999999995 459999999999999999999999999999999


Q ss_pred             EEEEEeeccCCcccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCccccCCCCCcccccEEE
Q 017143          159 KMVAIREHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYV  238 (376)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~  238 (376)
                      ..+++.+.++. ......|+.+...+||+++|+|+|.+|+++||+| +|++|++.......         ..+++|.+.+
T Consensus       149 ~~~~~~~~~~~-~~~~~~w~~~~~~ggG~l~d~g~H~id~~~~l~G-~p~~V~a~~~~~~~---------~~~~~d~~~~  217 (364)
T 3e82_A          149 KHFESHFDRFR-PEVRVRWREQNVPGSGLWFDLGPHLIDQALQLFG-LPQSVQGNIATLRD---------GAEINDWAHV  217 (364)
T ss_dssp             EEEEEEEECBC-CCC-----------CCHHHHHHHHHHHHHHHHHC-CCSEEEEEEECCST---------TCCSCCEEEE
T ss_pred             EEEEEEeeccC-CCCCcccccCCCCCCChHHhhhhHHHHHHHHHhC-CCeEEEEEEEeecC---------CCCcccEEEE
Confidence            99998654432 2224578887778999999999999999999999 79999998653211         1368899999


Q ss_pred             EEEecCCcEEEEEEEEeecCCCCceEEEEEecCCeeeeecccceee-e--ecccC----Ccc-ceEEeeccCccccccCC
Q 017143          239 IVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVR-F--ATREA----GRE-DVQTLKAEDDRIEYEGL  310 (376)
Q Consensus       239 ~l~~~~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~~~~-~--~~~~~----~~~-~~~~~~~~~~~~~~~~~  310 (376)
                      +|+|+| ..+++..++..++.  ..+++|+|++|++.++..+.... +  .....    ... ....+...+........
T Consensus       218 ~l~~~~-~~~~~~~s~~~~~~--~~~~~i~G~~G~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (364)
T 3e82_A          218 VLNYPA-HKVILHCSMLVAGG--SSRFTVHGDKGSVIKARADQQESQLLAGVVPGSADWGQDDDPLVIYDASLQAHAQAT  294 (364)
T ss_dssp             EEECSS-CEEEEEEESBCCSC--CCSEEEEESSEEEEECSCCCHHHHHHHTCCTTSTTTTCCCSCEEEEETTSCEEEECC
T ss_pred             EEEECC-EEEEEEEecccCCC--CCEEEEEeCCEEEEEecCChhHHHHhcCCCCCccccccCCCCceeecCCccceecCC
Confidence            999999 88888887765443  34799999999998754322110 0  00000    000 00001101100011112


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCEEEeh
Q 017143          311 HHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAIE  364 (376)
Q Consensus       311 ~~~~~~~~l~~f~~~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~g~~v~~~  364 (376)
                      ..+.+..++++|+++|+  ++.++.++++|++++++|++|+++|+++|++|.|+
T Consensus       295 ~~~~~~~~~~~f~~ai~--~g~~~~~~~~dal~~~~i~~A~~~Sa~~g~~V~l~  346 (364)
T 3e82_A          295 PQGDQRQYYMLIRDALK--GQIANPVPPVEALAVMAVLEAAVRSAESGMVQTLD  346 (364)
T ss_dssp             CCCCTHHHHHHHHHHHT--TSSCCSSCHHHHHHHHHHHHHHHHHHHHSBCBCCC
T ss_pred             CCCCHHHHHHHHHHHHh--cCCCCCCCHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            23567789999999998  77788899999999999999999999999999996

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=100.00  E-value=3.5e-55  Score=407.09  Aligned_cols=324  Identities=17%  Similarity=0.245  Sum_probs=260.3

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ++||||||+|.+|+.|++.+......+++|++|||++++   +++++++++|++ +.|+|+++|++++++|+|+|+||+.
T Consensus         2 ~~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~---~a~~~a~~~~~~-~~~~~~~~ll~~~~vD~V~i~tp~~   77 (334)
T 3ohs_X            2 ALRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLS---RAKEFAQKHDIP-KAYGSYEELAKDPNVEVAYVGTQHP   77 (334)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHH---HHHHHHHHHTCS-CEESSHHHHHHCTTCCEEEECCCGG
T ss_pred             ccEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHH---HHHHHHHHcCCC-cccCCHHHHhcCCCCCEEEECCCcH
Confidence            599999999999999999998873236899999999988   788899999986 7899999999998999999999999


Q ss_pred             ccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEEEEee
Q 017143           86 THYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIRE  165 (376)
Q Consensus        86 ~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~~~~~  165 (376)
                      .|++++++||+  +|||||||||++.+.+|+++|.+++++ +|+.+++++++||.|.++.+|++|++|.||+|..+++.+
T Consensus        78 ~H~~~~~~al~--~GkhVl~EKP~a~~~~e~~~l~~~a~~-~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~v~~~~  154 (334)
T 3ohs_X           78 QHKAAVMLCLA--AGKAVLCEKPMGVNAAEVREMVTEARS-RGLFLMEAIWTRFFPASEALRSVLAQGTLGDLRVARAEF  154 (334)
T ss_dssp             GHHHHHHHHHH--TTCEEEEESSSSSSHHHHHHHHHHHHH-TTCCEEEECGGGGSHHHHHHHHHHHHTTTCSEEEEEEEE
T ss_pred             HHHHHHHHHHh--cCCEEEEECCCCCCHHHHHHHHHHHHH-hCCEEEEEEhHhcCHHHHHHHHHHhcCCCCCeEEEEEEc
Confidence            99999999999  999999999999999999999999954 599999999999999999999999999999999999865


Q ss_pred             ccCCcccccCccccccccCCcccccccccHHHHHHHHhC-CCCeEEEEecccccccCccccCCCCCcccccEEEEEEecC
Q 017143          166 HRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVG-SNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFEN  244 (376)
Q Consensus       166 ~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G-~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~  244 (376)
                      ....   ...+|..+...+||+++|+|+|.+|+++||+| .+|++|++.....           ..+++|.+.++++|+|
T Consensus       155 ~~~~---~~~~~~~~~~~gGG~l~d~g~H~id~~~~l~G~~~p~~v~a~~~~~-----------~~~~~d~~~~~l~~~~  220 (334)
T 3ohs_X          155 GKNL---THVPRAVDWAQAGGALLDLGIYCVQFISMVFGGQKPEKISVMGRRH-----------ETGVDDTVTVLLQYPG  220 (334)
T ss_dssp             ECCC---TTCHHHHCTTTTCSHHHHTHHHHHHHHHHHTTTCCCSEEEEEEEEC-----------TTSSEEEEEEEEEETT
T ss_pred             cCCC---CCcCcCCCcccCCCCHHHhhhHHHHHHHHHhCCCCCeEEEEEEEEC-----------CCCcceEEEEEEEeCC
Confidence            4321   12234445667899999999999999999999 6899999876532           1267899999999999


Q ss_pred             CcEEEEEEEEeecCCCCceEEEEEecCCeeee-ecccceeeeecccCCccceEEeeccCccccccCCCCCCCHHHHHHHH
Q 017143          245 GSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEA-FVPESIVRFATREAGREDVQTLKAEDDRIEYEGLHHGSSYLEHLNFL  323 (376)
Q Consensus       245 G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~  323 (376)
                      |.++++.+++...   ...+++|+|++|++.+ +.......+..  .+.  ...+..+.....+.-...+.+..|+++|+
T Consensus       221 G~~~~~~~s~~~~---~~~~~~i~G~~G~i~~~~~~~~~~~~~~--~g~--~~~~~~~~~~~~~~~~~~~~~~~e~~~f~  293 (334)
T 3ohs_X          221 EVHGSFTCSITAQ---LSNTASVSGTKGMAQLLNPCWCPTELVV--KGE--HKEFLLPPVPKNCNFDNGAGMSYEAKHVR  293 (334)
T ss_dssp             TEEEEEEEESSSC---CCCCEEEEETTEEEEECSSTTSCCEEEE--TTE--EEECCCCSCCCSCSSTTGGGHHHHHHHHH
T ss_pred             CCEEEEEEEeccC---CCCeEEEEeeeEEEEECCCCCCCeEEEE--CCe--EEEEeCCCcccccccCCCCccHHHHHHHH
Confidence            9999999887543   2347999999999998 32111111111  111  11111111111111112346778999999


Q ss_pred             HHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Q 017143          324 SAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEK  357 (376)
Q Consensus       324 ~~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~  357 (376)
                      ++|+++..+.+.++++++++++++++++++|+..
T Consensus       294 ~~i~~g~~~~~~~~~~~~l~~~~i~~~i~~~~g~  327 (334)
T 3ohs_X          294 ECLRKGLKESPVIPLVESELLADILEEVRRAIGV  327 (334)
T ss_dssp             HHHHTTCSSCSSSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence            9998422246779999999999999999998653

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=100.00  E-value=2.8e-55  Score=420.16  Aligned_cols=340  Identities=16%  Similarity=0.228  Sum_probs=272.1

Q ss_pred             CCCCceeEEEEeCChhhH-HHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC---CCccCCHHHHhhCCCCCE
Q 017143            2 AANDTVKYGIIGMGMMGR-EHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP---LKVFPGHQELLDSGLCDV   77 (376)
Q Consensus         2 ~~~~~~~v~iiG~G~~g~-~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~D~   77 (376)
                      ++|+++||||||+|.+|+ .|++.+.+.  ++++|++|||++++   +++++++++|++   +..|+|++++++++++|+
T Consensus        79 ~~~~~irigiIG~G~~g~~~~~~~l~~~--~~~~lvav~d~~~~---~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~  153 (433)
T 1h6d_A           79 PEDRRFGYAIVGLGKYALNQILPGFAGC--QHSRIEALVSGNAE---KAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDA  153 (433)
T ss_dssp             CCCCCEEEEEECCSHHHHHTHHHHTTTC--SSEEEEEEECSCHH---HHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCE
T ss_pred             CCCCceEEEEECCcHHHHHHHHHHHhhC--CCcEEEEEEcCCHH---HHHHHHHHhCCCcccccccCCHHHHhcCCCCCE
Confidence            356789999999999997 899999887  79999999999988   677888899976   127999999999888999


Q ss_pred             EEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCc
Q 017143           78 VVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQ  157 (376)
Q Consensus        78 V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~  157 (376)
                      |+|+||+..|.+++++||+  +||||+||||++.+.+|+++|.+++++ .|+.+++++++||.|.++.+|++|++|.||+
T Consensus       154 V~iatp~~~h~~~~~~al~--aGk~Vl~EKPla~~~~e~~~l~~~a~~-~g~~~~v~~~~R~~p~~~~~k~~i~~G~iG~  230 (433)
T 1h6d_A          154 VYIILPNSLHAEFAIRAFK--AGKHVMCEKPMATSVADCQRMIDAAKA-ANKKLMIGYRCHYDPMNRAAVKLIRENQLGK  230 (433)
T ss_dssp             EEECSCGGGHHHHHHHHHH--TTCEEEECSSCCSSHHHHHHHHHHHHH-HTCCEEECCGGGGCHHHHHHHHHHHTTSSCS
T ss_pred             EEEcCCchhHHHHHHHHHH--CCCcEEEcCCCCCCHHHHHHHHHHHHH-hCCeEEEEechhcCHHHHHHHHHHHcCCCCC
Confidence            9999999999999999999  999999999999999999999999954 5999999999999999999999999999999


Q ss_pred             eEEEEEeeccCCcccccCc-ccccccc-CCcccccccccHHHHHHHHhCCCCeEEEEe-cccccccCccccCCCCCcccc
Q 017143          158 VKMVAIREHRFPFLVKVND-WNRFNEN-TGGTLVEKCCHFFDLMRLFVGSNPMRVMAS-GAVDVNHKDEMYNGKVPDIID  234 (376)
Q Consensus       158 i~~~~~~~~~~~~~~~~~~-w~~~~~~-~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~-~~~~~~~~~~~~~~~~~~~~d  234 (376)
                      |..+++.+........+.. |+.+... +||.++|+|+|.+|+++||+|.+|.+|++. ......   .    ...+++|
T Consensus       231 i~~v~~~~~~~~~~~~~~~~wr~~~~~~gGG~l~d~g~H~lD~~~~l~G~~p~~V~a~~~~~~~~---~----~~~~veD  303 (433)
T 1h6d_A          231 LGMVTTDNSDVMDQNDPAQQWRLRRELAGGGSLMDIGIYGLNGTRYLLGEEPIEVRAYTYSDPND---E----RFVEVED  303 (433)
T ss_dssp             EEEEEEEEECCCCTTSHHHHGGGCHHHHSSSHHHHTHHHHHHHHHHHHTSCEEEEEEEEECCTTC---G----GGSSSCS
T ss_pred             cEEEEEEEecccccCCCCcccccccccCCCCceecccchHHHHHHHHcCCCCEEEEEEecccCCC---c----cccccCc
Confidence            9999986544322223345 8877666 899999999999999999999779999987 322110   0    0125789


Q ss_pred             cEEEEEEecCCcEEEEEEEEeecCCCCceEEEEEecCCeeeeecccce--eeeecccCCccceEEeeccCccccccCCCC
Q 017143          235 NAYVIVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESI--VRFATREAGREDVQTLKAEDDRIEYEGLHH  312 (376)
Q Consensus       235 ~~~~~l~~~~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (376)
                      .+.++++|+||.++++.+++..   ....+++|+|++|++.++.....  ......... .  .. .  ...........
T Consensus       304 ~~~~~l~f~~G~~~~l~~s~~~---~~~~~~~I~Gt~G~i~~~~~~~~~~~~~~~~~~~-~--~~-~--~~~~~~~~~~~  374 (433)
T 1h6d_A          304 RIIWQMRFRSGALSHGASSYST---TTTSRFSVQGDKAVLLMDPATGYYQNLISVQTPG-H--AN-Q--SMMPQFIMPAN  374 (433)
T ss_dssp             EEEEEEEETTSCEEEEEEESSS---CCEEEEEEEESSCEEEESSSSCSSCCCEEEEETT-E--EE-E--ECCCSSCCSSC
T ss_pred             eEEEEEEECCCCEEEEEEEecc---CCCcEEEEEecCeEEEEECCccccccEEEEeccc-c--cc-C--CceeeccCCCc
Confidence            9999999999999999987632   34568999999999998643211  111000000 0  00 0  00001111123


Q ss_pred             CCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCEEEehhhh
Q 017143          313 GSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAIEEVM  367 (376)
Q Consensus       313 ~~~~~~l~~f~~~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~g~~v~~~~~~  367 (376)
                      +.+..++++|+++|+  ++.++.++++++++++++++++++|+++|++|.+++..
T Consensus       375 ~~~~~~~~~F~~~I~--~g~~~~~~~~d~l~~~~ii~a~~~Sa~~g~~V~l~~~~  427 (433)
T 1h6d_A          375 NQFSAQLDHLAEAVI--NNKPVRSPGEEGMQDVRLIQAIYEAARTGRPVNTDWGY  427 (433)
T ss_dssp             CHHHHHHHHHHHHHH--TTCCCSSBHHHHHHHHHHHHHHHHHHHHSSCEECCSCC
T ss_pred             cHHHHHHHHHHHHHh--cCCCCCCCHHHHHHHHHHHHHHHHHHhcCCeEEcCCcC
Confidence            456689999999998  66777899999999999999999999999999997653

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=100.00  E-value=4.7e-56  Score=414.79  Aligned_cols=336  Identities=21%  Similarity=0.262  Sum_probs=268.4

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      +++||||||+|.+|..|++.+.+.  +++++++|||++++   +++++++++|.  ..|+|++++++++++|+|+||||+
T Consensus         3 ~~~rvgiiG~G~~g~~~~~~l~~~--~~~~l~av~d~~~~---~~~~~a~~~g~--~~~~~~~~~l~~~~~D~V~i~tp~   75 (344)
T 3euw_A            3 LTLRIALFGAGRIGHVHAANIAAN--PDLELVVIADPFIE---GAQRLAEANGA--EAVASPDEVFARDDIDGIVIGSPT   75 (344)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHC--TTEEEEEEECSSHH---HHHHHHHTTTC--EEESSHHHHTTCSCCCEEEECSCG
T ss_pred             CceEEEEECCcHHHHHHHHHHHhC--CCcEEEEEECCCHH---HHHHHHHHcCC--ceeCCHHHHhcCCCCCEEEEeCCc
Confidence            469999999999999999999988  89999999999998   67788889994  599999999998889999999999


Q ss_pred             CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEEEEe
Q 017143           85 MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIR  164 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~~~~  164 (376)
                      ..|.+++++|++  +||||+||||++.+.+++++|.+++ ++.|+.+++++++||.|.++.+|++|++|.||+|..+++.
T Consensus        76 ~~h~~~~~~al~--~gk~v~~EKP~~~~~~~~~~l~~~a-~~~g~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~v~~~  152 (344)
T 3euw_A           76 STHVDLITRAVE--RGIPALCEKPIDLDIEMVRACKEKI-GDGASKVMLGFNRRFDPSFAAINARVANQEIGNLEQLVII  152 (344)
T ss_dssp             GGHHHHHHHHHH--TTCCEEECSCSCSCHHHHHHHHHHH-GGGGGGEEECCGGGGCHHHHHHHHHHHTTTTSSEEEEEEE
T ss_pred             hhhHHHHHHHHH--cCCcEEEECCCCCCHHHHHHHHHHH-HhcCCeEEecchhhcCHHHHHHHHHHhcCCCCceEEEEEE
Confidence            999999999999  8999999999999999999999999 5569999999999999999999999999999999999885


Q ss_pred             eccCCcccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCccccCCCCCcccccEEEEEEecC
Q 017143          165 EHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFEN  244 (376)
Q Consensus       165 ~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~  244 (376)
                      +.. +.. .+..|   ...+||.++|+|+|.+|+++||+| +|++|++...........     ..+.+|.+.++++|+|
T Consensus       153 ~~~-~~~-~~~~~---~~~~gG~l~d~g~H~ld~~~~l~G-~~~~v~a~~~~~~~~~~~-----~~~~~D~~~~~l~~~~  221 (344)
T 3euw_A          153 SRD-PAP-APKDY---IAGSGGIFRDMTIHDLDMARFFVP-NIVEVTATGANVFSQEIA-----EFNDYDQVIVTLRGSK  221 (344)
T ss_dssp             EEC-SSC-CCHHH---HHHSCHHHHHTHHHHHHHHHHHCS-CEEEEEEEEECSSCHHHH-----HTTCCSEEEEEEEETT
T ss_pred             ecC-CCC-CCccc---ccCCCceeecchhhHHHHHHHhcC-CcEEEEEEeccccccccc-----ccCCCceEEEEEEECC
Confidence            432 211 11223   457899999999999999999999 999999987654221100     0135688999999999


Q ss_pred             CcEEEEEEEEeecCCCCceEEEEEecCCeeeeeccc-ceeeeecccCCccceEEeeccCccccccCCCCCCCHHHHHHHH
Q 017143          245 GSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPE-SIVRFATREAGREDVQTLKAEDDRIEYEGLHHGSSYLEHLNFL  323 (376)
Q Consensus       245 G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~  323 (376)
                      |.++++..++..+. ....+++|+|++|++.++... ..+......    +....  ......+.....+.+..++++|+
T Consensus       222 G~~~~~~~s~~~~~-~~~~~~~i~G~~G~i~~~~~~~~~l~~~~~~----g~~~~--~~~~~~~~~~~~~~~~~~~~~f~  294 (344)
T 3euw_A          222 GELINIVNSRHCSY-GYDQRLEAFGSKGMLAADNIRPTTVRKHNAE----STEQA--DPIFNFFLERYDAAYKAELATFA  294 (344)
T ss_dssp             SCEEEEEEESCCTT-SCEEEEEEEETTEEEEECCCCSSCEEEESSS----CBSEE--CCCCCSHHHHTHHHHHHHHHHHH
T ss_pred             CcEEEEEEEeccCC-CCceEEEEEECcEEEEEcCCCCceEEEEcCC----Ccccc--CCccccchhhhhHHHHHHHHHHH
Confidence            99999998886533 235689999999999987532 222222111    11000  00000000111234567899999


Q ss_pred             HHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCEEEehhhhhhh
Q 017143          324 SAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAIEEVMEEL  370 (376)
Q Consensus       324 ~~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~g~~v~~~~~~~~~  370 (376)
                      ++|+  ++.++.++++++++++++++|+++|+++|++|+|+..+++-
T Consensus       295 ~~i~--~~~~~~~~~~d~~~~~~i~~a~~~Sa~~g~~V~~~~~~~~~  339 (344)
T 3euw_A          295 QGIR--DGQGFSPNFEDGVIALELANACLESAQTGRTVTLNPANEGH  339 (344)
T ss_dssp             HHHH--HCSCCSSBHHHHHHHHHHHHHHHHHHHHTBCEESSCC----
T ss_pred             HHHh--cCCCCCCCHHHHHHHHHHHHHHHHHHHhCCeEECCCCCCcc
Confidence            9998  56678899999999999999999999999999998887653

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=100.00  E-value=1.2e-55  Score=409.76  Aligned_cols=327  Identities=23%  Similarity=0.317  Sum_probs=264.2

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ++||||||+|.+|..|++.+.+.  +++++++|||++++   +++++++++|+  . |+|++++++++++|+|+||||+.
T Consensus         3 ~~~vgiiG~G~~g~~~~~~l~~~--~~~~l~av~d~~~~---~~~~~~~~~~~--~-~~~~~~~l~~~~~D~V~i~tp~~   74 (331)
T 4hkt_A            3 TVRFGLLGAGRIGKVHAKAVSGN--ADARLVAVADAFPA---AAEAIAGAYGC--E-VRTIDAIEAAADIDAVVICTPTD   74 (331)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHC--TTEEEEEEECSSHH---HHHHHHHHTTC--E-ECCHHHHHHCTTCCEEEECSCGG
T ss_pred             ceEEEEECCCHHHHHHHHHHhhC--CCcEEEEEECCCHH---HHHHHHHHhCC--C-cCCHHHHhcCCCCCEEEEeCCch
Confidence            69999999999999999999988  89999999999998   67888889986  3 99999999988899999999999


Q ss_pred             ccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEEEEee
Q 017143           86 THYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIRE  165 (376)
Q Consensus        86 ~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~~~~~  165 (376)
                      .|.+++++|++  +||||+||||++.+.+|+++|.++++ +.|+.+++++++||.|.++.+|++|++|.||+|..+++.+
T Consensus        75 ~h~~~~~~al~--~gk~v~~EKP~~~~~~~~~~l~~~a~-~~g~~~~v~~~~r~~p~~~~~~~~i~~g~iG~i~~~~~~~  151 (331)
T 4hkt_A           75 THADLIERFAR--AGKAIFCEKPIDLDAERVRACLKVVS-DTKAKLMVGFNRRFDPHFMAVRKAIDDGRIGEVEMVTITS  151 (331)
T ss_dssp             GHHHHHHHHHH--TTCEEEECSCSCSSHHHHHHHHHHHH-HTTCCEEECCGGGGCHHHHHHHHHHHTTTTCSEEEEEEEE
T ss_pred             hHHHHHHHHHH--cCCcEEEecCCCCCHHHHHHHHHHHH-HcCCeEEEcccccCCHHHHHHHHHHHcCCCCceEEEEEEe
Confidence            99999999999  89999999999999999999999995 4599999999999999999999999999999999998754


Q ss_pred             ccCCcccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCccccCCCCCcccccEEEEEEecCC
Q 017143          166 HRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENG  245 (376)
Q Consensus       166 ~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~G  245 (376)
                      .. +.    ..|..+...+||+++|+|+|.+|+++||+|.+|.+|++...........     ..+.+|.+.++++|+||
T Consensus       152 ~~-~~----~~~~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~v~a~~~~~~~~~~~-----~~~~~d~~~~~l~~~~G  221 (331)
T 4hkt_A          152 RD-PS----APPVDYIKRSGGIFRDMTIHDFDMARFLLGEEPVSVTATAAVLIDKAIG-----DAGDYDSVSVILQTASG  221 (331)
T ss_dssp             EC-SS----CCCHHHHHTTTCHHHHTHHHHHHHHHHHHCSCEEEEEEEEECCSCHHHH-----HTTCCSEEEEEEEETTC
T ss_pred             cC-CC----CCchhhhhcCCCeeehheehHHHHHHHHhCCCccEEEEEeccccccccc-----cCCCcceEEEEEEECCC
Confidence            32 21    1122234578999999999999999999998899999987653221100     11356899999999999


Q ss_pred             cEEEEEEEEeecCCCCceEEEEEecCCeeeeeccc-ceeeeecccCCccceEEeeccCccccccCCCCCCCHHHHHHHHH
Q 017143          246 SRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPE-SIVRFATREAGREDVQTLKAEDDRIEYEGLHHGSSYLEHLNFLS  324 (376)
Q Consensus       246 ~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~  324 (376)
                      .++++..++.... ....+++|+|++|++.++... ..+.....    .+....  ..... +.....+.+..++++|++
T Consensus       222 ~~~~~~~s~~~~~-~~~~~~~i~G~~G~i~~~~~~~~~~~~~~~----~~~~~~--~~~~~-~~~~~~~~~~~~~~~f~~  293 (331)
T 4hkt_A          222 KQAIISNSRRATY-GYDQRIEVHGSKGAVAAENQRPVSIEIATG----DGYTRP--PLHDF-FMTRYTEAYANEIESFIA  293 (331)
T ss_dssp             CEEEEEEESCCTT-CCEEEEEEEESSCEEEECCCCSCCEEEEET----TEEEEC--CCCSS-HHHHTHHHHHHHHHHHHH
T ss_pred             CEEEEEEecccCC-CCccEEEEEeCceEEEeccCCCccEEEEcC----CCcccC--CCCcc-chhhhhHHHHHHHHHHHH
Confidence            9999998875433 235689999999999986532 22222111    111110  00000 000112345678999999


Q ss_pred             HHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCEEEe
Q 017143          325 AIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAI  363 (376)
Q Consensus       325 ~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~g~~v~~  363 (376)
                      +|+  ++.++.++++++++++++++|+++|+++|++|.|
T Consensus       294 ~i~--~~~~~~~~~~d~~~~~~i~~a~~~S~~~g~~V~l  330 (331)
T 4hkt_A          294 AIE--KGAEIAPSGNDGLAALALADAAVRSVAEKRQISI  330 (331)
T ss_dssp             HHH--TTCCCSSCHHHHHHHHHHHHHHHHHHHHTBCEEC
T ss_pred             HHh--CCCCCCCCHHHHHHHHHHHHHHHHHHhcCCeEec
Confidence            999  6777889999999999999999999999999987

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=100.00  E-value=1.7e-55  Score=411.39  Aligned_cols=327  Identities=17%  Similarity=0.179  Sum_probs=259.2

Q ss_pred             ceeEEEEeCChhhH-HHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-CCccCCHHHHhhCCCCCEEEEeCC
Q 017143            6 TVKYGIIGMGMMGR-EHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         6 ~~~v~iiG~G~~g~-~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      |+||||||+|.+|+ .|++.+...  ++++|++|||++ .    +++++++++++ +..|+|+++||+++++|+|+||||
T Consensus         2 ~~rvgiiG~G~~g~~~~~~~l~~~--~~~~l~av~d~~-~----~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp   74 (349)
T 3i23_A            2 TVKMGFIGFGKSANRYHLPYVMIR--ETLEVKTIFDLH-V----NEKAAAPFKEKGVNFTADLNELLTDPEIELITICTP   74 (349)
T ss_dssp             CEEEEEECCSHHHHHTTHHHHTTC--TTEEEEEEECTT-C----CHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSC
T ss_pred             eeEEEEEccCHHHHHHHHHHHhhC--CCeEEEEEECCC-H----HHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCC
Confidence            59999999999998 699999887  899999999998 2    44566664333 458999999999999999999999


Q ss_pred             CCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEEEE
Q 017143           84 NMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAI  163 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~~~  163 (376)
                      +..|++++++||+  +||||+||||++.+.+|+++|.++|+ ++|+.+++++++||.|.++.+|++|++|.||+|..+++
T Consensus        75 ~~~h~~~~~~al~--aGk~Vl~EKP~a~~~~e~~~l~~~a~-~~g~~~~v~~~~r~~p~~~~~~~~i~~g~iG~i~~~~~  151 (349)
T 3i23_A           75 AHTHYDLAKQAIL--AGKSVIVEKPFCDTLEHAEELFALGQ-EKGVVVMPYQNRRFDGDYLAMKQVVEQGFLGEINEVET  151 (349)
T ss_dssp             GGGHHHHHHHHHH--TTCEEEECSCSCSSHHHHHHHHHHHH-HTTCCEEECCGGGGCHHHHHHHHHHHHTTTCSEEEEEE
T ss_pred             cHHHHHHHHHHHH--cCCEEEEECCCcCCHHHHHHHHHHHH-HcCCeEEEEecccCCHHHHHHHHHHhcCCCCCEEEEEE
Confidence            9999999999999  99999999999999999999999995 45999999999999999999999999999999999998


Q ss_pred             eeccCCcccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCccccCCCCCcccccEEEEEEec
Q 017143          164 REHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFE  243 (376)
Q Consensus       164 ~~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~  243 (376)
                      .+.++..   ...|+.+. .+||+++|+|+|.+|+++||+| +|.+|++.......         ..+++|.+.++|+|+
T Consensus       152 ~~~~~~~---~~~w~~~~-~ggG~l~d~g~H~id~~~~l~G-~p~~V~a~~~~~~~---------~~~~~d~~~~~l~~~  217 (349)
T 3i23_A          152 HIDYYRP---GSITEQGP-KENGSFYGLGIHLMDRMIALFG-RPDQVTYDIRNNEV---------SEAVDNYFDVDLHYG  217 (349)
T ss_dssp             ECCCBCT---TSCCSCCC-GGGSHHHHTHHHHHHHHHHHHC-CCSEEEECEECSSS---------TTSCCCEEEEEEEET
T ss_pred             EecccCC---chhhcccC-CCCCeehhhhhHHHHHHHHHhC-CCeEEEEEEEeeCC---------CCCcceEEEEEEEeC
Confidence            6543221   16787666 7899999999999999999999 89999997654221         136789999999999


Q ss_pred             CCcEEEEEEEEeecCCCCceEEEEEecCCeeeeecccc---eeeeecccC---------CccceEEeeccCc-cccc-cC
Q 017143          244 NGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPES---IVRFATREA---------GREDVQTLKAEDD-RIEY-EG  309 (376)
Q Consensus       244 ~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~---~~~~~~~~~---------~~~~~~~~~~~~~-~~~~-~~  309 (376)
                      ||..+++.+++..+..  ..+++|+|++|++.+...+.   .+.......         ...+......... .... ..
T Consensus       218 ~G~~~~~~~s~~~~~~--~~~~~i~G~~G~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~  295 (349)
T 3i23_A          218 SKLKVKVKTNHSVASP--YPRFIVHGSNGSFIKYGEDQQENDLKAGIMPDAPGFGEDSPMYYGEVTYRNGNGDWIKKQIK  295 (349)
T ss_dssp             TTEEEEEEECSBCSSC--CCSEEEEESSEEEEECSCCCHHHHHTTTCCTTSTTTTCCCGGGCEEEEEECTTSCEEEEEEC
T ss_pred             CCcEEEEEEecccCCC--CCEEEEEecceEEEEcCCCchHHHHhcCCCCCCCCCCCCchhhceEEEeccCCCceeeeecC
Confidence            9999999988765433  34799999999998643211   011000000         0001111111111 0000 11


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCE
Q 017143          310 LHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRF  360 (376)
Q Consensus       310 ~~~~~~~~~l~~f~~~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~g~~  360 (376)
                      ...+.+..++++|+++|+  ++.++++++++++++++|++|+++|+++|+.
T Consensus       296 ~~~~~~~~~~~~f~~ai~--~g~~~~~~~~da~~~~~ii~a~~~Sa~~Gr~  344 (349)
T 3i23_A          296 TPVGDYGRYYDAVYETLK--NGAPQLVTKEQALTNIEILEAGFLNPSPSVY  344 (349)
T ss_dssp             CCCCCTTHHHHHHHHHHH--HCCCCSSCHHHHHHHHHHHHHTTTSCSSEEE
T ss_pred             CCCCCHHHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHHHHhHHHHHh
Confidence            123567789999999999  6677889999999999999999999998765

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=100.00  E-value=1e-55  Score=414.11  Aligned_cols=333  Identities=19%  Similarity=0.216  Sum_probs=264.9

Q ss_pred             CCCCCceeEEEEeCChhhHH-HHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEE
Q 017143            1 MAANDTVKYGIIGMGMMGRE-HFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVV   79 (376)
Q Consensus         1 m~~~~~~~v~iiG~G~~g~~-~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~   79 (376)
                      |+ |+++||||||+|.+|.. |++.+.+.  ++++|++|||++++   ++++++++++.. +.|+|+++||+++++|+|+
T Consensus         1 M~-M~~~rigiIG~G~~g~~~~~~~l~~~--~~~~l~av~d~~~~---~~~~~a~~~~~~-~~~~~~~~ll~~~~vD~V~   73 (359)
T 3m2t_A            1 MS-LSLIKVGLVGIGAQMQENLLPSLLQM--QDIRIVAACDSDLE---RARRVHRFISDI-PVLDNVPAMLNQVPLDAVV   73 (359)
T ss_dssp             ---CCCEEEEEECCSHHHHHTHHHHHHTC--TTEEEEEEECSSHH---HHGGGGGTSCSC-CEESSHHHHHHHSCCSEEE
T ss_pred             CC-CCcceEEEECCCHHHHHHHHHHHHhC--CCcEEEEEEcCCHH---HHHHHHHhcCCC-cccCCHHHHhcCCCCCEEE
Confidence            44 45799999999999985 89999888  89999999999998   677888888654 7899999999998899999


Q ss_pred             EeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceE
Q 017143           80 VSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVK  159 (376)
Q Consensus        80 i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~  159 (376)
                      ||||+..|++++++||+  +|||||||||++.+++|+++|.+++++ +|+.+++++++||.|.++.+|++|++|.||+|.
T Consensus        74 i~tp~~~H~~~~~~al~--aGkhVl~EKPla~~~~e~~~l~~~a~~-~g~~~~v~~~~R~~p~~~~~k~~i~~g~iG~i~  150 (359)
T 3m2t_A           74 MAGPPQLHFEMGLLAMS--KGVNVFVEKPPCATLEELETLIDAARR-SDVVSGVGMNFKFARPVRQLREMTQVDEFGETL  150 (359)
T ss_dssp             ECSCHHHHHHHHHHHHH--TTCEEEECSCSCSSHHHHHHHHHHHHH-HTCCEEECCHHHHCHHHHHHHHHHTSGGGCCEE
T ss_pred             EcCCcHHHHHHHHHHHH--CCCeEEEECCCcCCHHHHHHHHHHHHH-cCCEEEEEecccCcHHHHHHHHHHHCCCCCCeE
Confidence            99999999999999999  999999999999999999999999954 599999999999999999999999999999999


Q ss_pred             EEEEeeccCCcccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCccccCCCCCcccccEEEE
Q 017143          160 MVAIREHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVI  239 (376)
Q Consensus       160 ~~~~~~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~  239 (376)
                      .+++.+...  .+....|+.... +||.++|+|+|.+|+++||+|.+|.+|++.....             +.+|.+.++
T Consensus       151 ~~~~~~~~~--~~~~~~w~~~~~-~gg~l~d~~~H~iD~~~~l~G~~~~~V~a~~~~~-------------~~~d~~~~~  214 (359)
T 3m2t_A          151 HIQLNHYAN--KPRAPLWGLDST-LRSFLLAQAIHTIDLAITFGDGELRRVQSSVQRH-------------DDALIVRAD  214 (359)
T ss_dssp             EEEEEEECC--CCSSCCTTCSCH-HHHHHHHTHHHHHHHHHHHHCSCEEEEEEEEEEE-------------TTEEEEEEE
T ss_pred             EEEEEEecC--CCCCCCcccCCC-ccchhhhcccHHHHHHHHHhCCCceEEEEEeecc-------------CCCeEEEEE
Confidence            999865432  223456765544 7899999999999999999998899999986542             246889999


Q ss_pred             EEecCCcEEEEEEEEeecCCCCceEEEEEecCCeeeeecccceeeeecccCCccceEE----eeccCccccccCCCCCCC
Q 017143          240 VEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQT----LKAEDDRIEYEGLHHGSS  315 (376)
Q Consensus       240 l~~~~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  315 (376)
                      |+|+||.++++..++..+.  ...+++|+|++|.+....+...+..............    ...+.+...........|
T Consensus       215 l~~~~G~~~~~~~s~~~~~--~~~~~~i~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (359)
T 3m2t_A          215 MAFSSGATASLLAGTSFPY--FEFDMKLVSSSSTLVELDNLWNITLHEPEHATRPTGAAKRWRGAWQPGPLDSGYERSGY  292 (359)
T ss_dssp             EEETTSCEEEEEEESCSSS--CEEEEEEEETTSCEEEEETTTEEEEECTTCCBTTTBSCTTCCEEECCCTTCCBSTTTSH
T ss_pred             EEECCCCEEEEEEecccCC--CceeEEEEeCCceEEEecCceEEEecCCCcceeeccCCCccccccCCCccccCcCchhH
Confidence            9999999999998886533  4568999999997543322222222111110000000    000000000011123467


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCEEEe
Q 017143          316 YLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAI  363 (376)
Q Consensus       316 ~~~l~~f~~~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~g~~v~~  363 (376)
                      ..++++|+++|+  ++.++.+++++++.++++++|+++|+++|++|..
T Consensus       293 ~~ei~~F~~ai~--~g~~~~~~~~d~l~~~~l~eai~~Sa~~~~~~~~  338 (359)
T 3m2t_A          293 HGELHQFFQAIR--EHRRFEADFASLLPTYRVIEEICSADAVAQGLQN  338 (359)
T ss_dssp             HHHHHHHHHHHH--TTCCCTTSTGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh--cCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCC
Confidence            789999999998  6777889999999999999999999999987764

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=100.00  E-value=8.2e-54  Score=413.85  Aligned_cols=358  Identities=15%  Similarity=0.191  Sum_probs=272.4

Q ss_pred             CCCCCceeEEEEeC----ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-CCccCCHHHHhhCCCC
Q 017143            1 MAANDTVKYGIIGM----GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LKVFPGHQELLDSGLC   75 (376)
Q Consensus         1 m~~~~~~~v~iiG~----G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~   75 (376)
                      |++|+++||||||+    |.+|..|++.+.... ++++|++|||++++   +++++++++|++ ++.|+|+++||+++++
T Consensus        34 ~~~m~~irvgiIG~g~~GG~~g~~h~~~l~~~~-~~~~lvav~d~~~~---~a~~~a~~~g~~~~~~~~d~~ell~~~~v  109 (479)
T 2nvw_A           34 VPSSRPIRVGFVGLTSGKSWVAKTHFLAIQQLS-SQFQIVALYNPTLK---SSLQTIEQLQLKHATGFDSLESFAQYKDI  109 (479)
T ss_dssp             SGGGCCEEEEEECCCSTTSHHHHTHHHHHHHTT-TTEEEEEEECSCHH---HHHHHHHHTTCTTCEEESCHHHHHHCTTC
T ss_pred             CCCCCcCEEEEEcccCCCCHHHHHHHHHHHhcC-CCeEEEEEEeCCHH---HHHHHHHHcCCCcceeeCCHHHHhcCCCC
Confidence            34567899999999    899999999998752 58999999999988   677888899975 3589999999999899


Q ss_pred             CEEEEeCCCCccHHHHHHHHcCCCC------CeEEEecCCCCCHHHHHHHHHHHHhCCC-eEEEEeeccccCHHHHHHHH
Q 017143           76 DVVVVSTPNMTHYQILMDIINHPKP------HHVLVEKPLCTTVADCKKVVDAARKRPD-ILVQVGLEYRYMPPVAKLIQ  148 (376)
Q Consensus        76 D~V~i~t~~~~h~~~~~~al~~~~g------~~Vl~EKP~a~~~~e~~~l~~~a~~~~~-~~~~v~~~~r~~p~~~~~k~  148 (376)
                      |+|+||||+..|++++++||+  +|      ||||||||++.+++|+++|.+++ +++| +.+++++++||.|.++.+|+
T Consensus       110 D~V~I~tp~~~H~~~~~~al~--aG~~~~~~khVl~EKPla~~~~ea~~l~~~a-~~~g~~~~~v~~~~R~~p~~~~~k~  186 (479)
T 2nvw_A          110 DMIVVSVKVPEHYEVVKNILE--HSSQNLNLRYLYVEWALAASVQQAEELYSIS-QQRANLQTIICLQGRKSPYIVRAKE  186 (479)
T ss_dssp             SEEEECSCHHHHHHHHHHHHH--HSSSCSSCCEEEEESSSSSSHHHHHHHHHHH-HTCTTCEEEEECGGGGCHHHHHHHH
T ss_pred             CEEEEcCCcHHHHHHHHHHHH--CCCCcCCceeEEEeCCCcCCHHHHHHHHHHH-HHcCCeEEEEEeccccCHHHHHHHH
Confidence            999999999999999999999  99      99999999999999999999999 5568 99999999999999999999


Q ss_pred             HHHcCCCCceEEEEEeeccCCc----ccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccC---
Q 017143          149 IVKSGSIGQVKMVAIREHRFPF----LVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHK---  221 (376)
Q Consensus       149 ~i~~g~iG~i~~~~~~~~~~~~----~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~---  221 (376)
                      +|++|.||+|..+++.+.....    +..+..|+.+...+||+++|+|+|.+|+++||+|.+|++|++.........   
T Consensus       187 ~i~~G~iG~i~~v~~~~~~~~~~~~~~~~~~~w~~~~~~gGG~l~d~g~H~lDl~~~l~G~~p~~V~a~~~~~~~~~~~~  266 (479)
T 2nvw_A          187 LISEGCIGDINSIEISGNGGWYGYERPMRSPEYLYDIESGVNLISNSFGHTIDVLQYITGSYFQKINAMISNNIPTQFLL  266 (479)
T ss_dssp             HHHTTTTCSEEEEEEEEECSBSSSEEETTCCGGGGCGGGSCSTTTTHHHHHHHHHHHHHTCCEEEEEEEEECCCSEEEEE
T ss_pred             HHHcCCCCCeEEEEEEecCCccCCcccccccccccCcccCccHHHHHHHHHHHHHHHHHCCCCCEEEEEEEeccCccccc
Confidence            9999999999999986432111    123457887777889999999999999999999988999999876532110   


Q ss_pred             --cc-ccCC-CCCcccccEEEEEEecCC-cEEEEEEEEeecCC--CCceEEEEEecCCeeeeeccc-----ceeee--ec
Q 017143          222 --DE-MYNG-KVPDIIDNAYVIVEFENG-SRGMLDLCMFAEGS--KNEQEIVVVGNTGKGEAFVPE-----SIVRF--AT  287 (376)
Q Consensus       222 --~~-~~~~-~~~~~~d~~~~~l~~~~G-~~~~l~~~~~~~~~--~~~~~~~i~Gt~G~i~~~~~~-----~~~~~--~~  287 (376)
                        .. .... ...+++|.+.++++|+|| +++++..++..+..  ....+++|+|++|++.++...     ..+.+  ..
T Consensus       267 ~~~g~~~g~~~~~~~~D~~~~~l~f~~G~~~~~~~~s~~~~~~~~~~~~~~~I~Gt~G~i~~~~~~~~~~~~~~~~~~~~  346 (479)
T 2nvw_A          267 DENGKRTKETISKTCPDHLLFQGILENGKVPVSCSFKGGTPVKKLTKNLVIDIHGTKGDLKIEGDAGFVEISNLVLYFYG  346 (479)
T ss_dssp             C--CCCCSCEEECCSCCEEEEEEEESGGGCEEEEEEECBSSCCSSSCSEEEEEEESSCEEEEEEC------CCEEEEEEE
T ss_pred             ccccccccccccCCcCeEEEEEEEECCCCEEEEEEEEeccCCCcCCCceEEEEEeCCeEEEEecCCcccccCccEEEEec
Confidence              00 0000 013578999999999999 99999877644321  445689999999999987652     11111  11


Q ss_pred             ccCCc--------cce------EEe---eccCcccc-----ccCCCC-------CCCHHHHHHHHHHHHhcCCC-C----
Q 017143          288 REAGR--------EDV------QTL---KAEDDRIE-----YEGLHH-------GSSYLEHLNFLSAIRAKGAK-V----  333 (376)
Q Consensus       288 ~~~~~--------~~~------~~~---~~~~~~~~-----~~~~~~-------~~~~~~l~~f~~~i~~~~~~-~----  333 (376)
                      .....        .+.      ..+   ..+...+.     ....+.       +.+..++++|+++|+  ++. +    
T Consensus       347 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~i~--~g~~~~~~~  424 (479)
T 2nvw_A          347 IKNGNGSSNGTDNNGAAAIKDKEKVTKSPSPSTGTSEEEQTMEVFHLRNYNSVVGNILRIYESIADYHF--LGKPESKSS  424 (479)
T ss_dssp             ESCC---------------------------------CCEEEEEECCTTCCHHHHHHHHHHHHHHHHHH--C--------
T ss_pred             cCCcccccccccccccccccccccccccCCCchhhhccccccCCccccccchHHHHHHHHHHHHHHHHh--cCCCccccc
Confidence            00000        000      001   00000000     000000       234568999999998  444 4    


Q ss_pred             --------------------CCCCHHHHHHHHHHHHHHHHHHHcCCEEEehhhh
Q 017143          334 --------------------PAVDLQDGLISVAIGVAAQLSIEKGRFIAIEEVM  367 (376)
Q Consensus       334 --------------------~~~~~~d~~~~~~ii~a~~~S~~~g~~v~~~~~~  367 (376)
                                          +.++++|+++++++++|+++|+++|++|.+++++
T Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~da~~~~~i~~a~~~S~~~g~~v~v~~~~  478 (479)
T 2nvw_A          425 RGPDDLFASTKFDKQGFRFEGFPTFKDAIILHRLIDAVFRSDKEEKTLDVSKIM  478 (479)
T ss_dssp             ----------CCCCCTTCSSSCCCHHHHHHHHHHHHHHHHHHHHTBCEECTTTT
T ss_pred             ccccccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHhcCCeeechhcc
Confidence                                7799999999999999999999999999998753

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=100.00  E-value=7.6e-54  Score=411.08  Aligned_cols=353  Identities=14%  Similarity=0.143  Sum_probs=269.2

Q ss_pred             CceeEEEEeC----ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-CCccCCHHHHhhCCCCCEEE
Q 017143            5 DTVKYGIIGM----GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LKVFPGHQELLDSGLCDVVV   79 (376)
Q Consensus         5 ~~~~v~iiG~----G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~   79 (376)
                      +++||||||+    |.+|..|++.+.+.. ++++|++|||++++   +++++++++|++ ++.|+|+++||+++++|+|+
T Consensus        19 ~~irvgiIG~g~~gG~~g~~~~~~l~~~~-~~~~lvav~d~~~~---~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~   94 (438)
T 3btv_A           19 APIRVGFVGLNAAKGWAIKTHYPAILQLS-SQFQITALYSPKIE---TSIATIQRLKLSNATAFPTLESFASSSTIDMIV   94 (438)
T ss_dssp             CCEEEEEESCCTTSSSTTTTHHHHHHHTT-TTEEEEEEECSSHH---HHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEE
T ss_pred             CCCEEEEEcccCCCChHHHHHHHHHHhcC-CCeEEEEEEeCCHH---HHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEE
Confidence            5799999999    889999999998752 58999999999988   677888899874 35899999999988899999


Q ss_pred             EeCCCCccHHHHHHHHcCCCC------CeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcC
Q 017143           80 VSTPNMTHYQILMDIINHPKP------HHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSG  153 (376)
Q Consensus        80 i~t~~~~h~~~~~~al~~~~g------~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g  153 (376)
                      ||||+..|++++++||+  +|      |||+||||++.+.+|+++|.+++ +++|+.+++++++||.|.++.+|++|++|
T Consensus        95 i~tp~~~H~~~~~~al~--aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a-~~~g~~~~v~~~~R~~p~~~~~k~~i~~G  171 (438)
T 3btv_A           95 IAIQVASHYEVVMPLLE--FSKNNPNLKYLFVEWALACSLDQAESIYKAA-AERGVQTIISLQGRKSPYILRAKELISQG  171 (438)
T ss_dssp             ECSCHHHHHHHHHHHHH--HGGGCTTCCEEEEESSCCSSHHHHHHHHHHH-HTTTCEEEEECGGGGCHHHHHHHHHHHTT
T ss_pred             EeCCcHHHHHHHHHHHH--CCCCcccceeEEecCcccCCHHHHHHHHHHH-HHcCCeEEEecccccCHHHHHHHHHHHcC
Confidence            99999999999999999  99      99999999999999999999999 56699999999999999999999999999


Q ss_pred             CCCceEEEEEeeccCC----cccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCc-cc-c--
Q 017143          154 SIGQVKMVAIREHRFP----FLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKD-EM-Y--  225 (376)
Q Consensus       154 ~iG~i~~~~~~~~~~~----~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~-~~-~--  225 (376)
                      .||+|..+++.+....    .+.....|+.+...+||+++|+|+|.+|+++|++|.+|++|++.......... .. .  
T Consensus       172 ~iG~i~~v~~~~~~~~~~~~~~~~~~~w~~~~~~gGG~l~d~g~H~lDl~~~l~G~~~~~V~a~~~~~~~~~~~~d~~~~  251 (438)
T 3btv_A          172 YIGDINSIEIAGNGGWYGYERPVKSPKYIYEIGNGVDLVTTTFGHTIDILQYMTSSYFSRINAMVFNNIPEQELIDERGN  251 (438)
T ss_dssp             TTCSEEEEEEEEECSSSSSEEETTSCGGGGSTTSSCSTTTTHHHHHHHHHHHHHTCCEEEEEEEEECCCSEEEEECTTSC
T ss_pred             CCCCcEEEEEEEccCcccccccCCccccccccccCCCeeeeeeeeHHHHHHHHhCCCceEEEEEeeccCCcccccccccc
Confidence            9999999988643211    11234578877778899999999999999999999889999998754321100 00 0  


Q ss_pred             -CC--CCCcccccEEEEEEecCC-cEEEEEEEEeecCC--CCceEEEEEecCCeeeeeccc-----ceeeeeccc-CC-c
Q 017143          226 -NG--KVPDIIDNAYVIVEFENG-SRGMLDLCMFAEGS--KNEQEIVVVGNTGKGEAFVPE-----SIVRFATRE-AG-R  292 (376)
Q Consensus       226 -~~--~~~~~~d~~~~~l~~~~G-~~~~l~~~~~~~~~--~~~~~~~i~Gt~G~i~~~~~~-----~~~~~~~~~-~~-~  292 (376)
                       .+  ...+++|.+.++++|+|| +++++..++.....  ....+++|+|++|++.++...     ..+.+.... .+ .
T Consensus       252 ~~g~~~~~~~~D~~~~~l~~~~G~~~~~~~~s~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~~~~~~~l~~~~~~~~~~~  331 (438)
T 3btv_A          252 RLGQRVPKTVPDHLLFQGTLLNGNVPVSCSFKGGKPTKKFTKNLVIDIHGTKRDLKLEGDAGFAEISNLVLYYSGTRAND  331 (438)
T ss_dssp             EEEEEEECCSCSEEEEEEEETTTTEEEEEEEESSCCC---CCSEEEEEEESSCEEEEECC-----CCEEEEEEEC-----
T ss_pred             ccccccCCCCCceEEEEEEECCCcEEEEEEEEccCCCCCCCCCeEEEEEecCcEEEEecCccccccCceEEEeccCcccc
Confidence             00  012578999999999999 99998877543321  345689999999999987541     122211010 00 0


Q ss_pred             cce---EEeeccCccc------cc---cCC--CCCCCHHHHHHHHHHHHhcCCCC-----------------CCCCHHHH
Q 017143          293 EDV---QTLKAEDDRI------EY---EGL--HHGSSYLEHLNFLSAIRAKGAKV-----------------PAVDLQDG  341 (376)
Q Consensus       293 ~~~---~~~~~~~~~~------~~---~~~--~~~~~~~~l~~f~~~i~~~~~~~-----------------~~~~~~d~  341 (376)
                      ...   ..+.......      ..   .+.  ..+.+..++++|++ |+  ++.+                 +.++++|+
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~-i~--~g~~~~~~~~~~~~~~~~~~~~~~~~~d~  408 (438)
T 3btv_A          332 FPLANGQQAPLDPGYDAGKEIMEVYHLRNYNAIVGNIHRLYQSISD-FH--FNTKKIPELPSQFVMQGFDFEGFPTLMDA  408 (438)
T ss_dssp             -----------------CCEEEEEECCSSCCHHHHHHHHHHHHHHH-HH--TTTTCCTTCCSCCSCCTTCSSSCCCHHHH
T ss_pred             ccccccceeecCcccccccccCCCcccccCChHHHHHHHHHHHHHH-Hh--CCCCccccccccccccccccCCCCCHHHH
Confidence            000   0111110000      00   000  01233468999999 98  5555                 78999999


Q ss_pred             HHHHHHHHHHHHHHHcCCEEEehhhh
Q 017143          342 LISVAIGVAAQLSIEKGRFIAIEEVM  367 (376)
Q Consensus       342 ~~~~~ii~a~~~S~~~g~~v~~~~~~  367 (376)
                      ++++++++|+++|+++|++|.+++..
T Consensus       409 ~~~~~i~~a~~~Sa~~g~~V~~~~~~  434 (438)
T 3btv_A          409 LILHRLIESVYKSNMMGSTLNVSNIS  434 (438)
T ss_dssp             HHHHHHHHHHHHHHHHTBCEECTTTT
T ss_pred             HHHHHHHHHHHHHHhcCCeEEecccc
Confidence            99999999999999999999998654

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=100.00  E-value=3.3e-54  Score=407.99  Aligned_cols=336  Identities=18%  Similarity=0.223  Sum_probs=259.7

Q ss_pred             CceeEEEEeCC-hhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143            5 DTVKYGIIGMG-MMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         5 ~~~~v~iiG~G-~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      +++||||||+| .+|..|++.+...  ++++|++|||++++   +++++++++|++  .|+|+++|++++++|+|+|+||
T Consensus         1 ~~~rigiiG~G~~~~~~~~~~l~~~--~~~~l~av~d~~~~---~~~~~a~~~g~~--~~~~~~ell~~~~vD~V~i~tp   73 (387)
T 3moi_A            1 MKIRFGICGLGFAGSVLMAPAMRHH--PDAQIVAACDPNED---VRERFGKEYGIP--VFATLAEMMQHVQMDAVYIASP   73 (387)
T ss_dssp             CCEEEEEECCSHHHHTTHHHHHHHC--TTEEEEEEECSCHH---HHHHHHHHHTCC--EESSHHHHHHHSCCSEEEECSC
T ss_pred             CceEEEEEeCCHHHHHHHHHHHHhC--CCeEEEEEEeCCHH---HHHHHHHHcCCC--eECCHHHHHcCCCCCEEEEcCC
Confidence            36999999999 8889999999988  89999999999988   677888899976  8999999999989999999999


Q ss_pred             CCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEEEE
Q 017143           84 NMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAI  163 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~~~  163 (376)
                      +..|++++++||+  +||||+||||++.+++|+++|.+++++ +|+.+++++++||.|.++.+|++|++|.||+|..++.
T Consensus        74 ~~~H~~~~~~al~--aGk~Vl~EKP~a~~~~e~~~l~~~a~~-~g~~~~v~~~~R~~p~~~~~k~~i~~g~iG~i~~~~~  150 (387)
T 3moi_A           74 HQFHCEHVVQASE--QGLHIIVEKPLTLSRDEADRMIEAVER-AGVHLVVGTSRSHDPVVRTLRAIVQEGSVGRVSMLNC  150 (387)
T ss_dssp             GGGHHHHHHHHHH--TTCEEEECSCCCSCHHHHHHHHHHHHH-HTCCEEECCCGGGSHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred             cHHHHHHHHHHHH--CCCceeeeCCccCCHHHHHHHHHHHHH-hCCeEEEEeccccCHHHHHHHHHHhcCCCCCeEEEEE
Confidence            9999999999999  999999999999999999999999954 5999999999999999999999999999999999987


Q ss_pred             eeccCCcccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCccccCCCCCcccccEEEEEEec
Q 017143          164 REHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFE  243 (376)
Q Consensus       164 ~~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~  243 (376)
                      .+...........|......+||+++|+|+|.+|+++||+|.+|++|++.......         ..+++|.+.++|+|+
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~ggG~l~d~g~H~id~~~~l~g~~~~~V~a~~~~~~~---------~~~~~d~~~~~l~f~  221 (387)
T 3moi_A          151 FNYTDFLYRPRRPEELDTSKGGGIIYNQLPHQIDSIKTITGQRITAVRAMTGRLDP---------KRPTEGNCAAMLTLE  221 (387)
T ss_dssp             EEECCGGGSCCCGGGGCGGGTCSHHHHTHHHHHHHHHHHHCCCEEEEEEEEECCCT---------TSCSCCEEEEEEEET
T ss_pred             EeccccccCCCChhhcccccCCcchhhhHHHHHHHHHHHhCCCceEEEEEEeecCC---------CCCcceEEEEEEEEC
Confidence            43222111112223334557899999999999999999999889999998754321         125789999999999


Q ss_pred             CCcEEEEEEEEeecCCCCceEEEEEecCCeeeeecccce--------------------------------------eee
Q 017143          244 NGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESI--------------------------------------VRF  285 (376)
Q Consensus       244 ~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~~--------------------------------------~~~  285 (376)
                      ||.++++..++..+.. ......+.|++|.++...-...                                      ..+
T Consensus       222 ~G~~~~~~~s~~~~~~-~~~~~~~~g~~g~~~~p~~g~~~~~~~~~g~d~qe~~l~~~~~~g~~~~~d~~~~~~~~~~~f  300 (387)
T 3moi_A          222 DGACAVMVYSGYDHFD-SDEMHFWLAEGGRAKQPNHGGARKVLRQLEGDEAELRRSRYGFGGPISKSMESGNTDRKQPHF  300 (387)
T ss_dssp             TSCEEEEEEECSSSSC-GGGGTTTBCTTSSBCCCCSSHHHHHHHHCCSCHHHHHHHHHSTTSTTCCC------CCCCCCC
T ss_pred             CCCEEEEEEecccCCC-CCeEEEEEEcCCeecCccccccccceeccCCcchhhhccccccCCcccccccccccccccccc
Confidence            9999999988865432 3335666677776654220000                                      000


Q ss_pred             ecc---------cCCccceEEeeccCc-ccccc-CCCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHH
Q 017143          286 ATR---------EAGREDVQTLKAEDD-RIEYE-GLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLS  354 (376)
Q Consensus       286 ~~~---------~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~l~~f~~~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S  354 (376)
                      +..         .....+...+..... ..+.. +...+.+..++++|+++|+  ++.++++++++++++++|++|+++|
T Consensus       301 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~--~g~~~~~~~e~a~~~l~v~eA~~~S  378 (387)
T 3moi_A          301 GVMLVTCEHADLRASPEGVLVYGDEGVREVPAITGRGPFSQGDTIDELRDAIA--GVAPALRDARWGKDTLEVCLAVLES  378 (387)
T ss_dssp             SEEEEEESSEEEEECSSEEEEEETTEEEEEECCCCSSSTHHHHHHHHHHHHHT--TSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             CccccchhccCCCCCCCceEEecCCCceeeccCCCCCCcchHHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHHHHh
Confidence            000         000000011111100 01111 1111225688999999998  7778899999999999999999999


Q ss_pred             HHcCCEEE
Q 017143          355 IEKGRFIA  362 (376)
Q Consensus       355 ~~~g~~v~  362 (376)
                      +++|++|+
T Consensus       379 a~~g~~V~  386 (387)
T 3moi_A          379 SATGRQVE  386 (387)
T ss_dssp             HHHSSCEE
T ss_pred             hhcCCcCc
Confidence            99999985

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=100.00  E-value=1e-52  Score=390.57  Aligned_cols=323  Identities=22%  Similarity=0.279  Sum_probs=265.3

Q ss_pred             eeEEEEeCChhhHHH-HHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            7 VKYGIIGMGMMGREH-FINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~-~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      +||||||+|.+|..| ++.+.+   +++++++|||++++   +++++++++|++ ..|+|++++++++++|+|+|+||+.
T Consensus         1 ~~vgiiG~G~~g~~~~~~~l~~---~~~~~vav~d~~~~---~~~~~~~~~g~~-~~~~~~~~~l~~~~~D~V~i~tp~~   73 (332)
T 2glx_A            1 NRWGLIGASTIAREWVIGAIRA---TGGEVVSMMSTSAE---RGAAYATENGIG-KSVTSVEELVGDPDVDAVYVSTTNE   73 (332)
T ss_dssp             CEEEEESCCHHHHHTHHHHHHH---TTCEEEEEECSCHH---HHHHHHHHTTCS-CCBSCHHHHHTCTTCCEEEECSCGG
T ss_pred             CeEEEEcccHHHHHhhhHHhhc---CCCeEEEEECCCHH---HHHHHHHHcCCC-cccCCHHHHhcCCCCCEEEEeCChh
Confidence            589999999999987 788876   58999999999988   677888889975 6899999999988899999999999


Q ss_pred             ccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEEEEee
Q 017143           86 THYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIRE  165 (376)
Q Consensus        86 ~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~~~~~  165 (376)
                      .|.+++++||+  +||||+||||++.+.+++++|.+++++ +|+.+++++++||.|.++.+|+++++|.||+|..+++.+
T Consensus        74 ~h~~~~~~al~--~Gk~v~~ekP~~~~~~~~~~l~~~a~~-~g~~~~~~~~~r~~p~~~~~~~~i~~g~iG~i~~v~~~~  150 (332)
T 2glx_A           74 LHREQTLAAIR--AGKHVLCEKPLAMTLEDAREMVVAARE-AGVVLGTNHHLRNAAAHRAMRDAIAEGRIGRPIAARVFH  150 (332)
T ss_dssp             GHHHHHHHHHH--TTCEEEECSSSCSSHHHHHHHHHHHHH-HTCCEEECCCGGGSHHHHHHHHHHHTTTTSSEEEEEEEE
T ss_pred             HhHHHHHHHHH--CCCeEEEeCCCcCCHHHHHHHHHHHHH-cCCEEEEeehhhcCHHHHHHHHHHHcCCCCCeEEEEEEE
Confidence            99999999999  899999999999999999999999954 599999999999999999999999999999999999865


Q ss_pred             ccCCcccccCccccc-cccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCccccCCCCCcccccEEEEEEecC
Q 017143          166 HRFPFLVKVNDWNRF-NENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFEN  244 (376)
Q Consensus       166 ~~~~~~~~~~~w~~~-~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~  244 (376)
                      .... ...+.+|+.+ ...+||.++|+|+|.+|+++||+|.+|.+|++.......        ...+++|.+.++++|+|
T Consensus       151 ~~~~-~~~~~~w~~~~~~~ggG~l~d~g~H~id~~~~l~G~~~~~V~a~~~~~~~--------~~~~~~d~~~~~l~~~~  221 (332)
T 2glx_A          151 AVYL-PPHLQGWRLERPEAGGGVILDITVHDADTLRFVLNDDPAEAVAISHSAGM--------GKEGVEDGVMGVLRFQS  221 (332)
T ss_dssp             ECBC-CGGGTTGGGSCTTTTCSHHHHTHHHHHHHHHHHHTSCEEEEEEEEECCSS--------SCTTCCSEEEEEEEETT
T ss_pred             cccC-CCCCCCcccccCCCCCchHhhhhHHHHHHHHHHcCCCCcEEEEEEecCCC--------CCCCccceEEEEEEECC
Confidence            4432 2345678776 557899999999999999999999789999998643211        01257899999999999


Q ss_pred             CcEEEEEEEEeecCCCCceEEEEEecCCeeeeecc-cc----eeeeecccCCccceEEeeccCccccccCCCCCCCHHHH
Q 017143          245 GSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVP-ES----IVRFATREAGREDVQTLKAEDDRIEYEGLHHGSSYLEH  319 (376)
Q Consensus       245 G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  319 (376)
                      |.++++.+++...  ....+++|+|++|++.+... ..    .+.+...    .+...+.       .  ...+.+..++
T Consensus       222 G~~~~~~~s~~~~--~~~~~~~i~G~~G~i~~~~~~~~~~~~~~~~~~~----~~~~~~~-------~--~~~~~~~~~~  286 (332)
T 2glx_A          222 GVIAQFHDAFTTK--FAETGFEVHGTEGSLIGRNVMTQKPVGTVTLRNA----EGESQLP-------L--DPANLYETAL  286 (332)
T ss_dssp             SCEEEEEEESBCS--SCCCEEEEEESSCEEEEESCSSSSSCCEEEEEET----TEEEECC-------C--CCCCHHHHHH
T ss_pred             CcEEEEEEEeecC--CCCceEEEEECceEEEeecccCCCCCceEEEEcC----CCceEEe-------c--CCcchHHHHH
Confidence            9999999887543  34458999999999965321 11    1111110    0111111       1  1123556789


Q ss_pred             HHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCEEEehh
Q 017143          320 LNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAIEE  365 (376)
Q Consensus       320 ~~f~~~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~g~~v~~~~  365 (376)
                      ++|+++|+  ++.++.++++++++++++++|+++|+++|++|.++.
T Consensus       287 ~~f~~~i~--~~~~~~~~~~~~~~~~~i~~a~~~S~~~g~~v~~~~  330 (332)
T 2glx_A          287 AAFHSAIE--GHGQPSATGEDGVWSLATGLAVVKAAATGQAAEIET  330 (332)
T ss_dssp             HHHHHHHT--TSSCCSSBHHHHHHHHHHHHHHHHHHHHSSCEECCC
T ss_pred             HHHHHHHh--cCCCCCCCHHHHHHHHHHHHHHHHHhhcCceEecCC
Confidence            99999998  667788999999999999999999999999999864

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=100.00  E-value=4.2e-53  Score=393.54  Aligned_cols=328  Identities=15%  Similarity=0.159  Sum_probs=254.4

Q ss_pred             CCceeEEEEeCChhhH-HHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeC
Q 017143            4 NDTVKYGIIGMGMMGR-EHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~-~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t   82 (376)
                      |+++||||||+|.+|. .+++.+. .  ++++|++|||++++   ++++++++|+.. +.|+|+++||+++++|+|+|+|
T Consensus         2 M~~~rvgiiG~G~~~~~~~~~~l~-~--~~~~lvav~d~~~~---~~~~~a~~~~~~-~~~~~~~~ll~~~~~D~V~i~t   74 (336)
T 2p2s_A            2 MKKIRFAAIGLAHNHIYDMCQQLI-D--AGAELAGVFESDSD---NRAKFTSLFPSV-PFAASAEQLITDASIDLIACAV   74 (336)
T ss_dssp             --CCEEEEECCSSTHHHHHHHHHH-H--TTCEEEEEECSCTT---SCHHHHHHSTTC-CBCSCHHHHHTCTTCCEEEECS
T ss_pred             CCccEEEEECCChHHHHHhhhhhc-C--CCcEEEEEeCCCHH---HHHHHHHhcCCC-cccCCHHHHhhCCCCCEEEEeC
Confidence            4679999999999986 6777775 3  68999999999998   567888888543 6899999999998999999999


Q ss_pred             CCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHH-HHHHHHHHHcCCCCceEEE
Q 017143           83 PNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPP-VAKLIQIVKSGSIGQVKMV  161 (376)
Q Consensus        83 ~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~-~~~~k~~i~~g~iG~i~~~  161 (376)
                      |+..|++++++||+  +||||+||||++.+.+|+++|.++++ ++|+.+++++++||.|. ++.+|++|++|.||+|..+
T Consensus        75 p~~~h~~~~~~al~--aGkhVl~EKP~a~~~~e~~~l~~~a~-~~g~~~~v~~~~R~~p~~~~~~~~~i~~g~iG~i~~v  151 (336)
T 2p2s_A           75 IPCDRAELALRTLD--AGKDFFTAKPPLTTLEQLDAVQRRVA-ETGRKFAVYFNERINVDSALFAGELVQRGEIGRVIQT  151 (336)
T ss_dssp             CGGGHHHHHHHHHH--TTCEEEECSSCCSCHHHHHHHHHHHH-HHCCCEEECCTTTTTCHHHHHHHHHHHTTTTSSEEEE
T ss_pred             ChhhHHHHHHHHHH--CCCcEEEeCCCCCCHHHHHHHHHHHH-HcCCEEEEeeccccCcHHHHHHHHHHhCCCCCceEEE
Confidence            99999999999999  99999999999999999999999995 45999999999999998 9999999999999999999


Q ss_pred             EEeeccCCcccccCccccccccCCcccccccccHHHHHHHHhCCC-CeEEEEecccccccCccccCCCCCcccccEEEEE
Q 017143          162 AIREHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSN-PMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIV  240 (376)
Q Consensus       162 ~~~~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~-~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l  240 (376)
                      ++.+..... ..+.+|+.+...+||.++|+|+|.+|+++||+|.+ +.+|++........       ...+++|.+.+++
T Consensus       152 ~~~~~~~~~-~~~~~w~~~~~~~gG~l~d~g~H~id~~~~l~G~~~~~~v~a~~~~~~~~-------~~~~~~d~~~~~l  223 (336)
T 2p2s_A          152 MGVGPHRER-GARPDWFYQKRQYGGILCDIGIHQIEQFLYFTGNTNARVVTSQTANYHHP-------HHPEFEDFGDAML  223 (336)
T ss_dssp             EEEEECBCC-SCCCGGGGCHHHHCCHHHHTHHHHHHHHHHHHTCSCEEEEEEEEECSSCT-------TSTTCCSEEEEEE
T ss_pred             EEEccccCC-CCCCCceecccccCCeeehhhhhHHHHHHHHhCCCCceEEEEeEEeecCC-------CCCCccchheEEE
Confidence            875322111 13467887777789999999999999999999975 68888876432111       1235789999999


Q ss_pred             EecCCcEEEEEEEEeecCCC---CceEEEEEecCCeeeeecccceeeeecccCCccceEEeeccCccccccCCCCCCCHH
Q 017143          241 EFENGSRGMLDLCMFAEGSK---NEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAEDDRIEYEGLHHGSSYL  317 (376)
Q Consensus       241 ~~~~G~~~~l~~~~~~~~~~---~~~~~~i~Gt~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (376)
                      +|+||.++++..++..+...   ...+++|+|++|++.++.....   .   ........+............ ....+.
T Consensus       224 ~~~~G~~~~~~~s~~~~~~~~~~~~~~~~i~G~~G~i~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~  296 (336)
T 2p2s_A          224 LGDNGATGYFRCDWFTPDGLSVWGDGRLTILGTEGYIEIRKYVDL---T---RGESNVVYLVNGKGEQRFTPA-GSVERA  296 (336)
T ss_dssp             EETTSCEEEEEEESBCCTTSSSSCCCEEEEEESSCEEEEECSCBT---T---TTBCSEEEEESSSCEEEECCT-TSSCCC
T ss_pred             EECCCcEEEEEEEecCCCCccccCCceEEEEecceEEEEeccccc---c---cCCCceEEeecCCCcceeccC-CCccHH
Confidence            99999999999888665432   2458999999999998632110   0   000000111000000000000 001123


Q ss_pred             HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 017143          318 EHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKG  358 (376)
Q Consensus       318 ~l~~f~~~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~g  358 (376)
                      .+.+|+++++  ++.++.++++++++++++++|+++|++++
T Consensus       297 ~~~~f~~~i~--~~~~~~~~~~d~l~~~~i~~a~~~Sa~~~  335 (336)
T 2p2s_A          297 FFPDFLRDCR--ERTENAMSQSHIFKATELSILAQQAANKI  335 (336)
T ss_dssp             HHHHHHHHHH--HCCCCSSCHHHHHHHHHHHHHHHHHCEEC
T ss_pred             HHHHHHHHHh--cCCCCCCCHHHHHHHHHHHHHHHHhhhhc
Confidence            4679999998  55667799999999999999999999875

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=100.00  E-value=4.5e-53  Score=395.18  Aligned_cols=336  Identities=20%  Similarity=0.271  Sum_probs=265.4

Q ss_pred             CCCCCceeEEEEeCChhhHHHHHHhh-hhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEE
Q 017143            1 MAANDTVKYGIIGMGMMGREHFINLH-HLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVV   79 (376)
Q Consensus         1 m~~~~~~~v~iiG~G~~g~~~~~~~~-~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~   79 (376)
                      .++++++||||||+|.+|..|++.+. +.  +++++++|||++++   +++++++++|++ ..|+|++++++++++|+|+
T Consensus         3 ~~~~~~~~v~iiG~G~ig~~~~~~l~~~~--~~~~~vav~d~~~~---~~~~~a~~~g~~-~~~~~~~~~l~~~~~D~V~   76 (346)
T 3cea_A            3 VTTRKPLRAAIIGLGRLGERHARHLVNKI--QGVKLVAACALDSN---QLEWAKNELGVE-TTYTNYKDMIDTENIDAIF   76 (346)
T ss_dssp             --CCCCEEEEEECCSTTHHHHHHHHHHTC--SSEEEEEEECSCHH---HHHHHHHTTCCS-EEESCHHHHHTTSCCSEEE
T ss_pred             CCCCCcceEEEEcCCHHHHHHHHHHHhcC--CCcEEEEEecCCHH---HHHHHHHHhCCC-cccCCHHHHhcCCCCCEEE
Confidence            03456899999999999999999998 66  79999999999988   677788889975 6899999999987899999


Q ss_pred             EeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCC-CeEEEEeeccccCHHHHHHHHHHHcCCCCce
Q 017143           80 VSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRP-DILVQVGLEYRYMPPVAKLIQIVKSGSIGQV  158 (376)
Q Consensus        80 i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~-~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i  158 (376)
                      |+||+..|.+++++||+  +||||+||||++.+.+++++|.+++ +++ ++.++++++.||.|.++.+|+++++|.||+|
T Consensus        77 i~tp~~~h~~~~~~al~--~G~~v~~eKp~~~~~~~~~~l~~~a-~~~~~~~~~~~~~~r~~p~~~~~~~~i~~g~iG~i  153 (346)
T 3cea_A           77 IVAPTPFHPEMTIYAMN--AGLNVFCEKPLGLDFNEVDEMAKVI-KSHPNQIFQSGFMRRYDDSYRYAKKIVDNGDIGKI  153 (346)
T ss_dssp             ECSCGGGHHHHHHHHHH--TTCEEEECSCCCSCHHHHHHHHHHH-HTCTTSCEECCCGGGTCHHHHHHHHHHHTTTTCSE
T ss_pred             EeCChHhHHHHHHHHHH--CCCEEEEcCCCCCCHHHHHHHHHHH-HhCCCCeEEEecccccCHHHHHHHHHHHcCCCCCe
Confidence            99999999999999999  8999999999999999999999999 667 9999999999999999999999999999999


Q ss_pred             EEEEEeeccCCcccccCcccccc-c--cCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCccccCCCCCccccc
Q 017143          159 KMVAIREHRFPFLVKVNDWNRFN-E--NTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDN  235 (376)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~w~~~~-~--~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~  235 (376)
                      ..+++.+.. +.  .+..|+... .  .+||+++|+|+|.+|+++||+|.+|.+|++...........     ..+.+|.
T Consensus       154 ~~v~~~~~~-~~--~~~~~~~~~~~~~~~gG~l~d~g~H~lD~~~~l~G~~~~~V~a~~~~~~~~~~~-----~~~~~D~  225 (346)
T 3cea_A          154 IYMRGYGID-PI--SGMESFTKFATEADSGGIFVDMNIHDIDLIRWFTGQDPVQAYGLTSNIAAPQLA-----DIGEFET  225 (346)
T ss_dssp             EEEEEEEEE-EG--GGHHHHHHHHHHSCCCCHHHHTTHHHHHHHHHHHSCCEEEEEEEEECSSCGGGG-----GGTCCSE
T ss_pred             EEEEEEecC-CC--CCChhHhhhcccCCCCchHHHhhccHHHHHHHHcCCCCeEEEEEEeeccCcccc-----ccCCcee
Confidence            999885322 11  123343332 2  28999999999999999999997799999986543211100     0123588


Q ss_pred             EEEEEEecCCcEEEEEEEEeecCCCCceEEEEEecCCeeeeeccc--ceeeeecccCCccceEEeeccCccccccCCCCC
Q 017143          236 AYVIVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPE--SIVRFATREAGREDVQTLKAEDDRIEYEGLHHG  313 (376)
Q Consensus       236 ~~~~l~~~~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (376)
                      +.++++|+||.++++..++..+.. ...+++|+|++|++.++...  ..+.....    .+... .. ..  .+.....+
T Consensus       226 ~~~~l~~~~G~~~~~~~s~~~~~~-~~~~~~i~G~~G~i~~~~~~~~~~~~~~~~----~~~~~-~~-~~--~~~~~~~~  296 (346)
T 3cea_A          226 GVAQLKMSDGVIATLIGGRHAAHG-NQVELEVMGSNGWVRIGEHPDLNRVTVFND----QGVVR-PS-LQ--SFGERFDT  296 (346)
T ss_dssp             EEEEEEETTSCEEEEEEEEEESSS-CEEEEEEEESSCEEEECSSCBCSSEEEEET----TEEEE-CB-CC--CHHHHSHH
T ss_pred             EEEEEEECCCcEEEEEEEEecCCC-CceEEEEEECCCEEEEcCCCCCccEEEEeC----CCccc-CC-Cc--chhhHhhH
Confidence            999999999999999998865432 34589999999999986543  12222111    01100 00 00  00001123


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCEEEeh
Q 017143          314 SSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAIE  364 (376)
Q Consensus       314 ~~~~~l~~f~~~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~g~~v~~~  364 (376)
                      .+..++++|+++|+  ++.++.++++++++++++++|+++|+++|++|.|+
T Consensus       297 ~~~~~~~~f~~~i~--~~~~~~~~~~~~~~~~~i~~a~~~S~~~g~~v~~~  345 (346)
T 3cea_A          297 AFTDEVQDFVNNVI--VGKQPEVTVDDGIKALKIAKACQQSANIGKLVDIQ  345 (346)
T ss_dssp             HHHHHHHHHHHHHH--HTCCCSSCHHHHHHHHHHHHHHHHHHHHTSCEECC
T ss_pred             HHHHHHHHHHHHHh--cCCCCCCCHHHHHHHHHHHHHHHHHHHcCCeEecC
Confidence            45578999999998  55667799999999999999999999999999984

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=100.00  E-value=1.4e-53  Score=397.92  Aligned_cols=327  Identities=15%  Similarity=0.120  Sum_probs=252.3

Q ss_pred             ceeEEEEeCChhhHH-HHH-HhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143            6 TVKYGIIGMGMMGRE-HFI-NLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~-~~~-~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      ++||||||+|.+|+. |++ .+...  ++++|++|||+++++   ++..++..++  ..|+|+++|++++++|+|+||||
T Consensus         2 ~~rvgiiG~G~~g~~~~~~~~~~~~--~~~~l~av~d~~~~~---~~~~~~~~~~--~~~~~~~~ll~~~~~D~V~i~tp   74 (345)
T 3f4l_A            2 VINCAFIGFGKSTTRYHLPYVLNRK--DSWHVAHIFRRHAKP---EEQAPIYSHI--HFTSDLDEVLNDPDVKLVVVCTH   74 (345)
T ss_dssp             CEEEEEECCSHHHHHHTHHHHTTCT--TTEEEEEEECSSCCG---GGGSGGGTTC--EEESCTHHHHTCTTEEEEEECSC
T ss_pred             ceEEEEEecCHHHHHHHHHHHHhcC--CCeEEEEEEcCCHhH---HHHHHhcCCC--ceECCHHHHhcCCCCCEEEEcCC
Confidence            599999999999985 888 66766  899999999999874   3333333354  58999999999999999999999


Q ss_pred             CCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEEEE
Q 017143           84 NMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAI  163 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~~~  163 (376)
                      +..|++++++|++  +||||+||||++.+++|+++|.+++++ +|+.+++++++||.|.++.+|++|++|.||+|..+++
T Consensus        75 ~~~h~~~~~~al~--aGk~Vl~EKP~a~~~~e~~~l~~~a~~-~g~~~~v~~~~r~~p~~~~~~~~i~~g~iG~i~~~~~  151 (345)
T 3f4l_A           75 ADSHFEYAKRALE--AGKNVLVEKPFTPTLAQAKELFALAKS-KGLTVTPYQNRRFDSCFLTAKKAIESGKLGEIVEVES  151 (345)
T ss_dssp             GGGHHHHHHHHHH--TTCEEEECSSSCSSHHHHHHHHHHHHH-HTCCEEECCGGGGCHHHHHHHHHHHHSTTCSEEEEEE
T ss_pred             hHHHHHHHHHHHH--cCCcEEEeCCCCCCHHHHHHHHHHHHH-cCCeEEEEechhcCHHHHHHHHHHhcCCCCCeEEEEE
Confidence            9999999999999  999999999999999999999999954 5999999999999999999999999999999999998


Q ss_pred             eeccCCcccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCccccCCCCCcccccEEEEEEec
Q 017143          164 REHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFE  243 (376)
Q Consensus       164 ~~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~  243 (376)
                      ++.++.    +..|......+||+++|+|+|.+|+++||+| +|.+|++.......         ..+++|.+.++|+|+
T Consensus       152 ~~~~~~----~~~~~~~~~~~gG~l~d~g~H~id~~~~l~G-~~~~v~a~~~~~~~---------~~~~~d~~~~~l~~~  217 (345)
T 3f4l_A          152 HFDYYR----PVAETKPGLPQDGAFYGLGVHTMDQIISLFG-RPDHVAYDIRSLRN---------KANPDDTFEAQLFYG  217 (345)
T ss_dssp             ECCCBC----CCCCCCCCCGGGSHHHHTHHHHHHHHHHHHC-SCSEEEEEEECCSC---------TTSSCCEEEEEEEET
T ss_pred             EeeccC----CccccCCCCCCCchhheehHHHHHHHHHHhC-CCeEEEEEEEEecC---------CCCcceEEEEEEEEC
Confidence            653321    2334444557899999999999999999999 79999997654321         136789999999999


Q ss_pred             CCcEEEEEEEEeecCCCCceEEEEEecCCeeeeecccce---eeeeccc-------CCccceEEeeccCcc-c-cccCCC
Q 017143          244 NGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESI---VRFATRE-------AGREDVQTLKAEDDR-I-EYEGLH  311 (376)
Q Consensus       244 ~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~~---~~~~~~~-------~~~~~~~~~~~~~~~-~-~~~~~~  311 (376)
                      ||. +++..++....  ...+++|+|++|++.++..+..   +......       ....+...+...... . ......
T Consensus       218 ~~~-~~~~~s~~~~~--~~~~~~i~G~~G~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  294 (345)
T 3f4l_A          218 DLK-AIVKTSHLVKI--DYPKFIVHGKKGSFIKYGIDQQETSLKANIMPGEPGFAADDSVGVLEYVNDEGVTVREEMKPE  294 (345)
T ss_dssp             TEE-EEEEECSBCSS--CCCSEEEEESSEEEEECSCCSHHHHHHTTCCTTSTTTTCCCCCEEEEEECTTSCEEEEEECCC
T ss_pred             CEE-EEEEEEecccC--CCCEEEEEecceEEEEeCCChhHHHHhcCCCCCCCCCCcCCCcceEEEecCCCcccceecCCC
Confidence            965 56665554432  3347999999999986432211   0000000       000111111111110 0 011122


Q ss_pred             CCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCEE
Q 017143          312 HGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFI  361 (376)
Q Consensus       312 ~~~~~~~l~~f~~~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~g~~v  361 (376)
                      .+.+..++++|+++|+  ++.+++++.+|++++++|++|+++|+++|++.
T Consensus       295 ~~~~~~~~~~f~~ai~--~g~~~~~~~~da~~~~~iiea~~~Sa~~g~~~  342 (345)
T 3f4l_A          295 MGDYGRVYDALYQTIT--HGAPNYVKESEVLTNLEILERGFEQASPSTVT  342 (345)
T ss_dssp             CCCTTHHHHHHHHHHH--HCCCCSSCHHHHHHHHHHHHHTTSSSSSEEEE
T ss_pred             CCCHHHHHHHHHHHHh--cCCCCCCCHHHHHHHHHHHHHHHHhhhcCccc
Confidence            4567789999999999  66778899999999999999999999998753

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=100.00  E-value=1.8e-52  Score=402.65  Aligned_cols=359  Identities=15%  Similarity=0.103  Sum_probs=263.5

Q ss_pred             CCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-CCccC----CHHHHhhCCCCCE
Q 017143            3 ANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LKVFP----GHQELLDSGLCDV   77 (376)
Q Consensus         3 ~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~l~~~~~D~   77 (376)
                      +|+++||||||+|.+|..|++.+...  ++++|++|||+++++.+.+.+...++|++ ++.|+    |+++||+++++|+
T Consensus        17 ~~~~~rvgiIG~G~~g~~h~~~l~~~--~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~   94 (444)
T 2ixa_A           17 NPKKVRIAFIAVGLRGQTHVENMARR--DDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDA   94 (444)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHTC--TTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCE
T ss_pred             CCCCceEEEEecCHHHHHHHHHHHhC--CCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCE
Confidence            45689999999999999999999988  89999999999998544333322356764 36788    9999999989999


Q ss_pred             EEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCc
Q 017143           78 VVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQ  157 (376)
Q Consensus        78 V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~  157 (376)
                      |+||||+..|.+++++||+  +||||+||||++.+++|+++|.++|+ ++|+.++++++.||.|.++.+|++|++|.||+
T Consensus        95 V~i~tp~~~h~~~~~~al~--aGkhV~~EKP~a~~~~ea~~l~~~a~-~~g~~~~v~~~~r~~p~~~~~~~~i~~G~iG~  171 (444)
T 2ixa_A           95 VFVSSPWEWHHEHGVAAMK--AGKIVGMEVSGAITLEECWDYVKVSE-QTGVPLMALENVCYRRDVMAILNMVRKGMFGE  171 (444)
T ss_dssp             EEECCCGGGHHHHHHHHHH--TTCEEEECCCCCSSHHHHHHHHHHHH-HHCCCEEECCGGGGCHHHHHHHHHHHTTTTCS
T ss_pred             EEEcCCcHHHHHHHHHHHH--CCCeEEEeCCCcCCHHHHHHHHHHHH-HhCCeEEEEeccccCHHHHHHHHHHHcCCCCC
Confidence            9999999999999999999  99999999999999999999999995 45999999999999999999999999999999


Q ss_pred             eEEEEEeeccCC-------cc--------------cccCcccccccc----------CCc-ccccccccHHHHHHHHhCC
Q 017143          158 VKMVAIREHRFP-------FL--------------VKVNDWNRFNEN----------TGG-TLVEKCCHFFDLMRLFVGS  205 (376)
Q Consensus       158 i~~~~~~~~~~~-------~~--------------~~~~~w~~~~~~----------~gG-~l~d~g~H~ld~~~~l~G~  205 (376)
                      |..+++.+....       ..              +....|+.....          +|| ++.|+++|.+|+++||+|.
T Consensus       172 i~~v~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~g~~~~~~ggG~vl~d~giH~~D~~~~l~g~  251 (444)
T 2ixa_A          172 LVHGTGGYQHDLRPVLFNSGINGKNGDGVEFGEKAFSEAKWRTNHYKNRNGELYPTHGVGPLHTMMDINRGNRLLRLSSF  251 (444)
T ss_dssp             EEEEEECCBCCCHHHHCBCSCTTCCSSCCBCSTTSCGGGGTHHHHHHHCCSCCCCHHHHHHHHHHHTBTTTBCEEEEEEE
T ss_pred             eEEEEEEEeccchhhhcccccccccccccccccccccCCCcccchhhccCCCcccccccCHHHHhhcccccchhheeecc
Confidence            999998654211       00              022467655332          235 4999999999999999993


Q ss_pred             --CCeEEEEecccccccCccccCCCCCcccccEEEEEEecCCcEEEEEEEEeecCCCCceEEEEEecCCeeeeeccc--c
Q 017143          206 --NPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPE--S  281 (376)
Q Consensus       206 --~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~--~  281 (376)
                        ++..|.+........... ......+.+|.+.++++|+||.+++++.++..+. ....+++|+||+|++.++...  .
T Consensus       252 ~~~~~~v~a~~~~~~~~~~~-~~~~~~~~~D~~~~~l~~~~G~~~~~~~s~~~~~-~~~~~~~v~Gt~G~i~~~~~~~~~  329 (444)
T 2ixa_A          252 ASKARGLHKYIVDKGGESHP-NAKVEWKQGDIVTTQIQCHNGETIVLTHDTSLQR-PYNLGFKVQGTEGLWEDFGWGEAA  329 (444)
T ss_dssp             ECCCCHHHHHHHHHHCTTSG-GGGCCCCSCSCEEEEEEETTSCEEEEEEBCSSCC-CCCCCCEEEESSCEEEECSSSCTT
T ss_pred             cccccchhhhHHHhcCCCCc-ccccccccCceeEEEEEECCCCEEEEEEEeccCC-CCCceEEEEEeeeEEEecccccCC
Confidence              344444432221100000 0001124679999999999999999998876543 234589999999999985431  1


Q ss_pred             e--eeeecccCCccceEEeeccCcccc-----------ccCCCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 017143          282 I--VRFATREAGREDVQTLKAEDDRIE-----------YEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIG  348 (376)
Q Consensus       282 ~--~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~~f~~~i~~~~~~~~~~~~~d~~~~~~ii  348 (376)
                      .  +.+.................+.+.           ....+.++.+.++.+|+++|+  ++.++.+++++++++++|+
T Consensus       330 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~gh~g~~~~~~~~fi~~i~--~g~~~~~~~~da~~~~~i~  407 (444)
T 2ixa_A          330 QGFIYFEKIMNHSHRWDSSEKWIKEYDHPMWKKHEQKAVGAGHGGMDYFLDNTFVECIK--RNEAFPLDVYDLATWYSIT  407 (444)
T ss_dssp             SEEEECTTTTTTCCSCEESHHHHHHTCCHHHHHHHHHHSTTSCCTHHHHHHHHHHHHHH--HTCCCSSCHHHHHHHHHHH
T ss_pred             CceEEecCCCCCccccccchhhHHhcCChhhhhhhhhcccCCCCCccHHHHHHHHHHHh--cCCCCCCCHHHHHHHHHHH
Confidence            1  222111110011111000000000           002223344456789999999  6677889999999999999


Q ss_pred             HHHHHHHHcC-CEEEehhhhhhh
Q 017143          349 VAAQLSIEKG-RFIAIEEVMEEL  370 (376)
Q Consensus       349 ~a~~~S~~~g-~~v~~~~~~~~~  370 (376)
                      +|+++|+++| ++|.||+++.+.
T Consensus       408 ~aa~~Sa~~gg~~V~ip~~~~g~  430 (444)
T 2ixa_A          408 PLSEKSIAENGAVQEIPDFTNGK  430 (444)
T ss_dssp             HHHHHHHHTTTCCEECCCTTTTT
T ss_pred             HHHHHHHHcCCceeecccccccc
Confidence            9999999998 999999986543

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=100.00  E-value=9.5e-52  Score=388.18  Aligned_cols=339  Identities=19%  Similarity=0.170  Sum_probs=256.3

Q ss_pred             CCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC--CCccCCHHHHhhCCCCCEEEE
Q 017143            3 ANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP--LKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         3 ~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      +++++||||||+|.+|..|++.+...  +++++++|||++++   +++++++++|++  +..|+|++++++++++|+|+|
T Consensus         3 ~~~~~~vgiiG~G~ig~~~~~~l~~~--~~~~lv~v~d~~~~---~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i   77 (362)
T 1ydw_A            3 TETQIRIGVMGCADIARKVSRAIHLA--PNATISGVASRSLE---KAKAFATANNYPESTKIHGSYESLLEDPEIDALYV   77 (362)
T ss_dssp             ---CEEEEEESCCTTHHHHHHHHHHC--TTEEEEEEECSSHH---HHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEE
T ss_pred             CCCceEEEEECchHHHHHHHHHHhhC--CCcEEEEEEcCCHH---HHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEE
Confidence            45689999999999999999999887  89999999999988   677888899862  368999999999888999999


Q ss_pred             eCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcC-CCCceE
Q 017143           81 STPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSG-SIGQVK  159 (376)
Q Consensus        81 ~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g-~iG~i~  159 (376)
                      +||+..|.+++++||+  +||||+||||++.+.+|+++|.++| +++|+.+++++++||+|.++.+|++|++| .||+|.
T Consensus        78 ~tp~~~h~~~~~~al~--aGk~V~~EKP~a~~~~e~~~l~~~a-~~~g~~~~~~~~~r~~p~~~~~~~~i~~g~~iG~i~  154 (362)
T 1ydw_A           78 PLPTSLHVEWAIKAAE--KGKHILLEKPVAMNVTEFDKIVDAC-EANGVQIMDGTMWVHNPRTALLKEFLSDSERFGQLK  154 (362)
T ss_dssp             CCCGGGHHHHHHHHHT--TTCEEEECSSCSSSHHHHHHHHHHH-HTTTCCEEECCCGGGSGGGTTTTTGGGCTTTTCSEE
T ss_pred             cCChHHHHHHHHHHHH--CCCeEEEecCCcCCHHHHHHHHHHH-HHcCCEEEEEEeeccCHHHHHHHHHHHhcCCccceE
Confidence            9999999999999999  9999999999999999999999999 56699999999999999999999999987 699999


Q ss_pred             EEEEeeccCCcc-cccCcccccccc-CCcccccccccHHHHHHHHhCC-CCeEEEEecccccccCccccCCCCCcccccE
Q 017143          160 MVAIREHRFPFL-VKVNDWNRFNEN-TGGTLVEKCCHFFDLMRLFVGS-NPMRVMASGAVDVNHKDEMYNGKVPDIIDNA  236 (376)
Q Consensus       160 ~~~~~~~~~~~~-~~~~~w~~~~~~-~gG~l~d~g~H~ld~~~~l~G~-~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~  236 (376)
                      .+++.+...... +.+.+|+..... +||+++|+|+|.+|+++|++|. .|.+|++.......         ..+++|.+
T Consensus       155 ~v~~~~~~~~~~~~~~~~wr~~~~~~ggG~l~d~g~H~id~~~~l~g~~~p~~V~a~~~~~~~---------~~~~~d~~  225 (362)
T 1ydw_A          155 TVQSCFSFAGDEDFLKNDIRVKPGLDGLGALGDAGWYAIRATLLANNFELPKTVTAFPGAVLN---------EAGVILSC  225 (362)
T ss_dssp             EEEEEEEEECCHHHHHHCGGGCTTSSTTHHHHHTHHHHHHHHHHHTTTCCCSEEEECSCCEEC---------TTSCEEEE
T ss_pred             EEEEEEEecCCcccccCCcccCcccCCCceeecccHHHHHHHHHhcCCCCCeEEEEecccccc---------CCCCceEE
Confidence            998865432211 113467665554 5799999999999999999995 59999998643221         12478999


Q ss_pred             EEEEEecCCcEEEEEEEEeecCCCCceEEEEEecCCeeeeecccce-----eeeecccCCccceEE-eeccCccccc--c
Q 017143          237 YVIVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESI-----VRFATREAGREDVQT-LKAEDDRIEY--E  308 (376)
Q Consensus       237 ~~~l~~~~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~--~  308 (376)
                      .++|+|+||.++++.+++...   ...+++|+|++|++.++.....     ..+.....+  .... ...+......  .
T Consensus       226 ~~~l~~~~G~~~~~~~s~~~~---~~~~~~i~G~~G~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  300 (362)
T 1ydw_A          226 GASLSWEDGRTATIYCSFLAN---LTMEITAIGTKGTLRVHDFIIPYKETEASFTTSTKA--WFNDLVTAWVSPPSEHTV  300 (362)
T ss_dssp             EEEEECSSSCEEEEEEESEEE---EEEEEEEEESSEEEEESSCSSCSBTTEEEEEEEESC--CBCTTSSSBSSCCEEEEE
T ss_pred             EEEEEECCCCEEEEEEEcccC---CCceEEEEeccEEEEECceeecccCCcceEEEecCc--cccccccccccCcceecc
Confidence            999999999999999887652   3468999999999998642211     000000000  0000 0000000000  0


Q ss_pred             CCCCCCCHHHHHHHHHHH----HhcCCCCCCCCHHHHHHHHHHHHHHHHHHHcC-CEEEeh
Q 017143          309 GLHHGSSYLEHLNFLSAI----RAKGAKVPAVDLQDGLISVAIGVAAQLSIEKG-RFIAIE  364 (376)
Q Consensus       309 ~~~~~~~~~~l~~f~~~i----~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~g-~~v~~~  364 (376)
                      .........++++|+++|    ++ +..+.+.+.++++++++|++|+++|+++| ++|+++
T Consensus       301 ~~~~~~~~~~~~~f~~~i~~i~~~-g~~~~~~~~~~~l~~~~ii~a~~~S~~~g~~~V~l~  360 (362)
T 1ydw_A          301 KTELPQEACMVREFARLVGEIKNN-GAKPDGYWPSISRKTQLVVDAVKESVDKNYQQISLS  360 (362)
T ss_dssp             ECSSCHHHHHHHHHTTCC-------------CHHHHHHHHHHHHHHHHHHHHTTTCCEECC
T ss_pred             CCCchHHHHHHHHHHHHHhhhhhc-CCCCCCcCHHHHHHHHHHHHHHHHHHHcCCeEEEec
Confidence            000111235789999998    42 22333466899999999999999999998 799985

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=100.00  E-value=2.8e-49  Score=363.44  Aligned_cols=305  Identities=15%  Similarity=0.207  Sum_probs=240.8

Q ss_pred             CCCceeEEEEeCChhhHH-HHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEe
Q 017143            3 ANDTVKYGIIGMGMMGRE-HFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         3 ~~~~~~v~iiG~G~~g~~-~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~   81 (376)
                      +|+++||||||+|.+|.. |++.+.+.  +++++++|||++++   +++++++++|++  .|+|++++++  ++|+|+||
T Consensus         3 ~M~~~~igiIG~G~~g~~~~~~~l~~~--~~~~l~av~d~~~~---~~~~~a~~~~~~--~~~~~~~ll~--~~D~V~i~   73 (308)
T 3uuw_A            3 AMKNIKMGMIGLGSIAQKAYLPILTKS--ERFEFVGAFTPNKV---KREKICSDYRIM--PFDSIESLAK--KCDCIFLH   73 (308)
T ss_dssp             --CCCEEEEECCSHHHHHHTHHHHTSC--SSSEEEEEECSCHH---HHHHHHHHHTCC--BCSCHHHHHT--TCSEEEEC
T ss_pred             ccccCcEEEEecCHHHHHHHHHHHHhC--CCeEEEEEECCCHH---HHHHHHHHcCCC--CcCCHHHHHh--cCCEEEEe
Confidence            456899999999999996 89999888  89999999999998   678888899987  5999999999  59999999


Q ss_pred             CCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEE
Q 017143           82 TPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMV  161 (376)
Q Consensus        82 t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~  161 (376)
                      ||+..|.+++++|++  +||||+||||++.+.+++++|.+++++ +|+.+++++++||.|.++++|++     ||++..+
T Consensus        74 tp~~~h~~~~~~al~--~gk~vl~EKP~~~~~~~~~~l~~~a~~-~g~~~~v~~~~r~~p~~~~~~~~-----ig~~~~~  145 (308)
T 3uuw_A           74 SSTETHYEIIKILLN--LGVHVYVDKPLASTVSQGEELIELSTK-KNLNLMVGFNRRFCPMYKEIKNN-----ATEIVSI  145 (308)
T ss_dssp             CCGGGHHHHHHHHHH--TTCEEEECSSSSSSHHHHHHHHHHHHH-HTCCEEECCGGGGCHHHHHHHHH-----CCSEEEE
T ss_pred             CCcHhHHHHHHHHHH--CCCcEEEcCCCCCCHHHHHHHHHHHHH-cCCEEEEeeccccCHHHHHHHHH-----cCCCcEE
Confidence            999999999999999  999999999999999999999999954 59999999999999999999996     5666666


Q ss_pred             EEeeccCCcccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCccccCCCCCcccccEEEEEE
Q 017143          162 AIREHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVE  241 (376)
Q Consensus       162 ~~~~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l~  241 (376)
                      .+.+++.   ..+..|+     ++|.++|+|+|.+|+++||+| +|.+|.+......          ..+.+|.+.++++
T Consensus       146 ~~~~~r~---~~~~~~~-----~~g~l~d~g~H~id~~~~l~G-~~~~v~~~~~~~~----------~~~~~d~~~~~l~  206 (308)
T 3uuw_A          146 NICKHGL---NSLRNVR-----FDSTLIDDYIHVIDTALWLAN-EDVEISGEDLFLT----------DNKNLIFVSHKLK  206 (308)
T ss_dssp             EEEEECS---SCCCSSC-----HHHHHHHTHHHHHHHHHHHHC-SCCEEEEEEEEEC----------TTSCEEEEEEEEE
T ss_pred             EEEeccC---CCCCccc-----cCceeeecchHHHHHHHHHcC-CCceEEEeeeeec----------CCCceeEEEEEEE
Confidence            6654432   2234564     257999999999999999999 7888877644321          1256899999999


Q ss_pred             ecCCcEEEEEEEEeecCCCCceEEEEEecCCeeeeecccceeeeecccCCccceEEeeccCccccccCCCCCCCHHHHHH
Q 017143          242 FENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAEDDRIEYEGLHHGSSYLEHLN  321 (376)
Q Consensus       242 ~~~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  321 (376)
                      |++| ++++..++..  .....+++|+|++|+++++.... +....  .+.........+...     .....+..++++
T Consensus       207 ~~~g-~~~~~~s~~~--~~~~~~~~i~G~~G~i~~~~~~~-~~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~e~~~  275 (308)
T 3uuw_A          207 GKNF-SINTSMHRDS--GTKLEQVEILSKGKIQRVKNLNV-LEIEE--GGNLTLKQSGAWVNI-----LKQKGFEDISNH  275 (308)
T ss_dssp             CSSC-EEEEEEETTC--SSCEEEEEEEETTEEEEEETTTE-EEEEE--TTEEEEEECCTTCCH-----HHHHTHHHHHHH
T ss_pred             eCCE-EEEEEEEcCC--CCCeEEEEEEECCcEEEEecCce-EEEEc--CCcceecccCCccch-----hhccchHHHHHH
Confidence            9997 5777766543  22345899999999999976543 22211  111111111111100     011346689999


Q ss_pred             HHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 017143          322 FLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIE  356 (376)
Q Consensus       322 f~~~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~  356 (376)
                      |+++|+  +++++.++++|+++++++++++++|++
T Consensus       276 F~~~i~--~g~~~~~~~~d~~~~~~i~~ai~~S~k  308 (308)
T 3uuw_A          276 FIDCIE--NNIKPAINGEECIKAQRLLEKIINSVK  308 (308)
T ss_dssp             HHHHHH--TTCCCSSCGGGGTHHHHHHHHHHHTCC
T ss_pred             HHHHHh--CCCCCCcCHHHHHHHHHHHHHHHHhcC
Confidence            999999  667888999999999999999999964

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=100.00  E-value=1.5e-49  Score=365.56  Aligned_cols=290  Identities=16%  Similarity=0.142  Sum_probs=234.2

Q ss_pred             CceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHh---------hCCC
Q 017143            5 DTVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELL---------DSGL   74 (376)
Q Consensus         5 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---------~~~~   74 (376)
                      +|+||||||+ |++|..|++++...   +.++++|||+++++    ..++++++. ++.|+|+++|+         ++++
T Consensus         2 ~mirvgiIG~gG~i~~~h~~~l~~~---~~~lvav~d~~~~~----~~~~~~~~~-~~~~~~~~~ll~~~~~l~~~~~~~   73 (318)
T 3oa2_A            2 HMKNFALIGAAGYIAPRHMRAIKDT---GNCLVSAYDINDSV----GIIDSISPQ-SEFFTEFEFFLDHASNLKRDSATA   73 (318)
T ss_dssp             -CCEEEEETTTSSSHHHHHHHHHHT---TCEEEEEECSSCCC----GGGGGTCTT-CEEESSHHHHHHHHHHHTTSTTTS
T ss_pred             CceEEEEECCCcHHHHHHHHHHHhC---CCEEEEEEcCCHHH----HHHHhhCCC-CcEECCHHHHHHhhhhhhhccCCC
Confidence            4799999999 78999999999886   68999999999873    234556644 37899999999         3788


Q ss_pred             CCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCC
Q 017143           75 CDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGS  154 (376)
Q Consensus        75 ~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~  154 (376)
                      +|+|+|+||+..|++++++||+  +|||||||||++.|++|+++|.+++++ +|+.+++++++||.|.++.+|++|++|.
T Consensus        74 vD~V~I~tP~~~H~~~~~~al~--aGkhVl~EKPla~~~~ea~~l~~~a~~-~g~~~~v~~~~R~~p~~~~~k~~i~~g~  150 (318)
T 3oa2_A           74 LDYVSICSPNYLHYPHIAAGLR--LGCDVICEKPLVPTPEMLDQLAVIERE-TDKRLYNILQLRHHQAIIALKDKVAREK  150 (318)
T ss_dssp             CCEEEECSCGGGHHHHHHHHHH--TTCEEEECSSCCSCHHHHHHHHHHHHH-HTCCEEECCGGGGCHHHHHHHHHHHHS-
T ss_pred             CcEEEECCCcHHHHHHHHHHHH--CCCeEEEECCCcCCHHHHHHHHHHHHH-hCCEEEEEEhhhcCHHHHHHHHHHhcCC
Confidence            9999999999999999999999  999999999999999999999999955 5999999999999999999999999999


Q ss_pred             CCceEEEEEeeccCCcccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCccccCCCCCcccc
Q 017143          155 IGQVKMVAIREHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIID  234 (376)
Q Consensus       155 iG~i~~~~~~~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d  234 (376)
                      ||+|..+++.+........+.+|+.+...+||+++|+|+|.+|+++|++| +|.+|.+..                +.+|
T Consensus       151 iG~i~~v~~~~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~id~~~~l~G-~~~~v~~~~----------------~~~d  213 (318)
T 3oa2_A          151 SPHKYEVDLTYITSRGNWYLKSWKGDPRKSFGVATNIGVHFYDMLHFIFG-KLQRNVVHF----------------TSEY  213 (318)
T ss_dssp             CSSCEEEEEEEEECCCHHHHHSGGGCHHHHCCHHHHHHHHHHHHHHHHHC-SEEEEEEEE----------------ECSS
T ss_pred             CCceEEEEEEEEecCCCCCCcccccCCCcCCCccccCCcHHHHHHHHHhC-CCceEEEEe----------------cCCc
Confidence            99999999876543322234678888778899999999999999999999 688887752                3568


Q ss_pred             cEEEEEEecCCcEEEEEEEEeecCCCCceEEEEEecCCeeeeecccceeeeecccCCccceEEeeccCccccccCCCCCC
Q 017143          235 NAYVIVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAEDDRIEYEGLHHGS  314 (376)
Q Consensus       235 ~~~~~l~~~~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (376)
                      .+.++|+|+||.+..+ .++.. . ... + +|+|++|++.....+..              +..           ..+.
T Consensus       214 ~~~~~l~~~~g~~~~~-~s~~~-~-~~~-~-~i~G~~G~~~~~~~d~q--------------e~~-----------~~~g  263 (318)
T 3oa2_A          214 KTAGYLEYEQARVRWF-LSVDA-N-DLP-E-SVKGKKPTYRSITVNGE--------------EME-----------FSEG  263 (318)
T ss_dssp             EEEEEEEETTEEEEEE-EECCG-G-GSC-T-TTTTTCSEEEEEEETTE--------------ECC-----------C---
T ss_pred             EEEEEEEeCCCeEEEE-EEecC-C-CCC-e-EEEecCcEEEEEeECcc--------------HHH-----------HhcC
Confidence            8999999999987765 34322 2 222 3 99999999875432111              000           0134


Q ss_pred             CHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 017143          315 SYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIE  356 (376)
Q Consensus       315 ~~~~l~~f~~~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~  356 (376)
                      +..+..+|+++|+  +++++  +++|++.+++++++++.|..
T Consensus       264 ~~~~~~~~~~~i~--~g~~~--~~~da~~~~~i~~~i~~~~~  301 (318)
T 3oa2_A          264 FTDLHTTSYEEIL--AGRGY--GIDDARHCVETVNTIRSAVI  301 (318)
T ss_dssp             --CHHHHHHHHHH--TTCCC--CHHHHHHHHHHHHHHHHCCC
T ss_pred             CchhhHHHHHHHH--cCCCC--CHHHHHHHHHHHHHHhcCCc
Confidence            4457899999998  44444  89999999999999998766

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=100.00  E-value=2.4e-48  Score=358.21  Aligned_cols=307  Identities=19%  Similarity=0.202  Sum_probs=243.7

Q ss_pred             CCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeC
Q 017143            3 ANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         3 ~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t   82 (376)
                      +++++||||||+|.+|..|++.+.+.  +++++++|+|++++   ++++++++  +  ..|+|++++++++++|+|+|+|
T Consensus         7 ~~~~~~igiIG~G~~g~~~~~~l~~~--~~~~~v~v~d~~~~---~~~~~~~~--~--~~~~~~~~~l~~~~~D~V~i~t   77 (315)
T 3c1a_A            7 NNSPVRLALIGAGRWGKNYIRTIAGL--PGAALVRLASSNPD---NLALVPPG--C--VIESDWRSVVSAPEVEAVIIAT   77 (315)
T ss_dssp             --CCEEEEEEECTTTTTTHHHHHHHC--TTEEEEEEEESCHH---HHTTCCTT--C--EEESSTHHHHTCTTCCEEEEES
T ss_pred             CCCcceEEEECCcHHHHHHHHHHHhC--CCcEEEEEEeCCHH---HHHHHHhh--C--cccCCHHHHhhCCCCCEEEEeC
Confidence            34579999999999999999999987  79999999999987   45555544  4  4799999999987899999999


Q ss_pred             CCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEEE
Q 017143           83 PNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVA  162 (376)
Q Consensus        83 ~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~~  162 (376)
                      |+..|.+++++|++  +||||+||||++.+.+++++|.++++ ++|+.+++++++||.|.++.+|++|+  .||+|..++
T Consensus        78 p~~~h~~~~~~al~--~Gk~v~~eKP~~~~~~~~~~l~~~a~-~~g~~~~~~~~~r~~p~~~~~~~~i~--~lG~i~~v~  152 (315)
T 3c1a_A           78 PPATHAEITLAAIA--SGKAVLVEKPLTLDLAEAEAVAAAAK-ATGVMVWVEHTQLFNPAWEALKADLT--SIGPILAVR  152 (315)
T ss_dssp             CGGGHHHHHHHHHH--TTCEEEEESSSCSCHHHHHHHHHHHH-HHCCCEEEECGGGGCHHHHHHHHTHH--HHCSEEEEE
T ss_pred             ChHHHHHHHHHHHH--CCCcEEEcCCCcCCHHHHHHHHHHHH-HcCCEEEEeechhcCHHHHHHHHHHH--HcCCeEEEE
Confidence            99999999999999  89999999999999999999999995 45999999999999999999999999  899999998


Q ss_pred             EeeccCCcccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCccccCCCCCcccccEEEEEEe
Q 017143          163 IREHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEF  242 (376)
Q Consensus       163 ~~~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~  242 (376)
                      +++++      ..+|   ...+||.++|+|+|.+|+++||+|.+|.+|++........        ..+++|.+.++++|
T Consensus       153 ~~~~~------~~~~---~~~ggG~l~d~g~H~id~~~~l~G~~~~~v~a~~~~~~~~--------~~~~~d~~~~~l~~  215 (315)
T 3c1a_A          153 SEAGN------HGPY---RPGGVPMLWDWGAHDVSMVLDLMGRDPDSTSASWAARGEK--------DGGEAGDVTLTLAF  215 (315)
T ss_dssp             EEEEE------ECCC---CTTCCCHHHHHHHHHHHHHHHHHSSCCSEEEEEEEEEEEE--------TTEEEEEEEEEEEE
T ss_pred             EEEec------CCCc---cccCCcchhhhhchHHHHHHHHhCCCCcEEEEEeEeecCC--------CCCCCceEEEEEEE
Confidence            86411      2345   3347899999999999999999996699999986553211        12678999999999


Q ss_pred             cCCcEEEEEEEEeecCCCCceEEEEEecCCeeeeecccc-eeeeecccCCccceEEeeccCccccccCCCCCCCHHHHHH
Q 017143          243 ENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPES-IVRFATREAGREDVQTLKAEDDRIEYEGLHHGSSYLEHLN  321 (376)
Q Consensus       243 ~~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  321 (376)
                       ||.++++..+ ..+  ....+++|+|++|++.++.... .+....   +.. ...+. .+....+.....+.+..++++
T Consensus       216 -~g~~~~~~~s-~~~--~~~~~~~i~G~~G~i~~~~~~~~~~~~~~---~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~  286 (315)
T 3c1a_A          216 -STVEAHIRLC-NTM--DKCRRLAVFGEAGTLVMDDRATDKLTLHP---PQP-DGNWP-VGQGHALTVTDEMPLTRAVRL  286 (315)
T ss_dssp             -TTEEEEEEEE-SEE--EEEEEEEEEESSCEEEEETTSSSSSEEEC---CCS-SCCCC-CSCCEECCCCCCCHHHHHHHH
T ss_pred             -CCEEEEEEEe-cCC--CCCceEEEEecccEEEEccCCCceEEEEc---CCc-ccccC-CCcccccCCCccchHHHHHHH
Confidence             9999999987 332  2345899999999999876443 222211   100 00000 000000111123456689999


Q ss_pred             HHHHHHhcCCCCCCCCHHHHHHHHHHHHHH
Q 017143          322 FLSAIRAKGAKVPAVDLQDGLISVAIGVAA  351 (376)
Q Consensus       322 f~~~i~~~~~~~~~~~~~d~~~~~~ii~a~  351 (376)
                      |+++|+  ++.++.++++++++++++++|+
T Consensus       287 f~~~i~--~~~~~~~~~~~~~~~~~i~~a~  314 (315)
T 3c1a_A          287 FAGAVR--QPEPGPSPLELGLRVVRVLGAC  314 (315)
T ss_dssp             HHHHTT--SCCCCSSBHHHHHHHHHHHHHH
T ss_pred             HHHHHh--cCCCCCCCHHHHHHHHHHHHhh
Confidence            999998  6677889999999999999997

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=100.00  E-value=4.4e-48  Score=357.84  Aligned_cols=278  Identities=17%  Similarity=0.176  Sum_probs=226.6

Q ss_pred             CCCCceeEEEEeCChhhH-HHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhC-CCCCEEE
Q 017143            2 AANDTVKYGIIGMGMMGR-EHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDS-GLCDVVV   79 (376)
Q Consensus         2 ~~~~~~~v~iiG~G~~g~-~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~D~V~   79 (376)
                      .+|+++||||||+|.+|. .|++.+...  ++++|++|||++++          ++|++  .|+|+++||++ +++|+|+
T Consensus        21 ~~M~~~rvgiiG~G~ig~~~~~~~l~~~--~~~~lvav~d~~~~----------~~g~~--~~~~~~~ll~~~~~vD~V~   86 (330)
T 4ew6_A           21 QSMSPINLAIVGVGKIVRDQHLPSIAKN--ANFKLVATASRHGT----------VEGVN--SYTTIEAMLDAEPSIDAVS   86 (330)
T ss_dssp             CCCCCEEEEEECCSHHHHHTHHHHHHHC--TTEEEEEEECSSCC----------CTTSE--EESSHHHHHHHCTTCCEEE
T ss_pred             ccCCCceEEEEecCHHHHHHHHHHHHhC--CCeEEEEEEeCChh----------hcCCC--ccCCHHHHHhCCCCCCEEE
Confidence            456789999999999998 799999998  89999999999875          35765  89999999998 8999999


Q ss_pred             EeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceE
Q 017143           80 VSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVK  159 (376)
Q Consensus        80 i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~  159 (376)
                      |+||+..|++++++||+  +||||+||||++.+++|+++|.++|++ +|+.+++++++||.|.++.+|++|++|.||+|.
T Consensus        87 i~tp~~~H~~~~~~al~--aGkhVl~EKP~a~~~~e~~~l~~~a~~-~g~~~~v~~~~r~~p~~~~~k~~i~~g~iG~v~  163 (330)
T 4ew6_A           87 LCMPPQYRYEAAYKALV--AGKHVFLEKPPGATLSEVADLEALANK-QGASLFASWHSRYAPAVEAAKAFLASTTIKSVH  163 (330)
T ss_dssp             ECSCHHHHHHHHHHHHH--TTCEEEECSSSCSSHHHHHHHHHHHHH-HTCCEEECCGGGGSTTHHHHHHHHHSSCEEEEE
T ss_pred             EeCCcHHHHHHHHHHHH--cCCcEEEeCCCCCCHHHHHHHHHHHHh-cCCeEEEEehhhccHHHHHHHHHHhcCCceEEE
Confidence            99999999999999999  999999999999999999999999954 599999999999999999999999999999987


Q ss_pred             EEEEeeccCCcccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCccccCCCCCcccccEEEE
Q 017143          160 MVAIREHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVI  239 (376)
Q Consensus       160 ~~~~~~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~  239 (376)
                      .+.....+  .+.....|+.  ..+||.++|+|+|.+|+++|++| +|.+|.+.......         ..+.+|.+.+.
T Consensus       164 ~~~~~~~~--~~~~~~~w~~--~~ggG~l~d~g~H~ld~~~~l~g-~~~~v~~~~~~~~~---------~~~~~~~a~l~  229 (330)
T 4ew6_A          164 VIWKEDVR--HWHPNQDWIW--QAGGLGVFDPGINALSIVTHILP-RPVFITGAVLEFPE---------NRDAPIAADIH  229 (330)
T ss_dssp             EEEECBHH--HHSTTCSGGG--STTSCTTHHHHHHHHHHHHHHSS-SCCEEEEEEEEEEE---------SCSSCSEEEEE
T ss_pred             EEEccCcc--ccCCCCCceE--cCCCcEEEEchhHHHHHHHHHcC-CCeEEEEEEEecCC---------CCcccEEEEEE
Confidence            65432211  1222345654  35889999999999999999999 78888887544322         12567889999


Q ss_pred             EEecCCcEEEEEEEEeecCCCCceEEEEEecCCeeeeecccceeeeecccCCccceEEeeccCccccccCCCCCCCHHHH
Q 017143          240 VEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAEDDRIEYEGLHHGSSYLEH  319 (376)
Q Consensus       240 l~~~~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  319 (376)
                      +++++|..+++..+|..+.. ..++++|+|++|++.++.....+...    +.           .  ......+.|..++
T Consensus       230 ~~~~~g~~~~~~~~~~~~~~-~~~~~~i~Gt~G~i~~~~~~~~l~~~----g~-----------~--~~~~~~~~y~~~~  291 (330)
T 4ew6_A          230 FRDADGLPVHAEFDWRQTGK-QSWDIVAETAAGQMVLSEGGAKLSID----GR-----------L--TFAEPEQEYPSLY  291 (330)
T ss_dssp             EECTTCCEEEEEEESBCCSS-CEEEEEEEESSCCEEEETTTTEEEET----TC-----------C--C--CCCCHHHHHH
T ss_pred             EEcCCceEEEEEEEeccCCC-CceEEEEEeCCEEEEEECCccEEEEC----CE-----------E--EecCCCcchHHHH
Confidence            99999999999888765433 55689999999999988655444321    10           0  0111234567899


Q ss_pred             HHHHHHHHh
Q 017143          320 LNFLSAIRA  328 (376)
Q Consensus       320 ~~f~~~i~~  328 (376)
                      ++|+++|++
T Consensus       292 ~~F~~~v~~  300 (330)
T 4ew6_A          292 RRFAEIIKA  300 (330)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHc
Confidence            999999995

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=100.00  E-value=6.4e-48  Score=356.58  Aligned_cols=306  Identities=14%  Similarity=0.141  Sum_probs=239.0

Q ss_pred             ceeEEEEeCChhhHH-HHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIGMGMMGRE-HFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~-~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      ++||||||+|.+|.. |++.+.+.  ++++++ |||++++   +++++++++|++ ..|.++.++| ++++|+|+|+||+
T Consensus         2 ~~~igiIG~G~ig~~~~~~~l~~~--~~~~l~-v~d~~~~---~~~~~a~~~g~~-~~~~~~~~~l-~~~~D~V~i~tp~   73 (323)
T 1xea_A            2 SLKIAMIGLGDIAQKAYLPVLAQW--PDIELV-LCTRNPK---VLGTLATRYRVS-ATCTDYRDVL-QYGVDAVMIHAAT   73 (323)
T ss_dssp             CEEEEEECCCHHHHHTHHHHHTTS--TTEEEE-EECSCHH---HHHHHHHHTTCC-CCCSSTTGGG-GGCCSEEEECSCG
T ss_pred             CcEEEEECCCHHHHHHHHHHHHhC--CCceEE-EEeCCHH---HHHHHHHHcCCC-ccccCHHHHh-hcCCCEEEEECCc
Confidence            589999999999985 99999887  789999 9999988   677888899986 4366666777 5679999999999


Q ss_pred             CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEEEEe
Q 017143           85 MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIR  164 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~~~~  164 (376)
                      ..|.+++++||+  +||||+||||++.+.+++++|.++++ ++|+.+++++++||.|.++.+|++|++|.||+|..++..
T Consensus        74 ~~h~~~~~~al~--~Gk~V~~EKP~~~~~~~~~~l~~~a~-~~g~~~~v~~~~r~~p~~~~~~~~i~~g~iG~i~~v~~~  150 (323)
T 1xea_A           74 DVHSTLAAFFLH--LGIPTFVDKPLAASAQECENLYELAE-KHHQPLYVGFNRRHIPLYNQHLSELAQQECGALRSLRWE  150 (323)
T ss_dssp             GGHHHHHHHHHH--TTCCEEEESCSCSSHHHHHHHHHHHH-HTTCCEEEECGGGCCHHHHHHCHHHHHTSCTTCSEEEEE
T ss_pred             hhHHHHHHHHHH--CCCeEEEeCCCcCCHHHHHHHHHHHH-hcCCeEEEeeccccCHHHHHHHHHHhcCCcCCceEEEEE
Confidence            999999999999  89999999999999999999999994 459999999999999999999999999999999998875


Q ss_pred             eccCCcccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCccccCCCCCcccccEEEEEEecC
Q 017143          165 EHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFEN  244 (376)
Q Consensus       165 ~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~  244 (376)
                      +.+...   +..|       +|.++|+|+|.+|+++||+|.+|.+|++.....              .+|...++++|++
T Consensus       151 ~~~~~~---p~~~-------~g~l~d~g~H~id~~~~l~G~~~~~V~a~~~~~--------------~~d~~~~~~~~~~  206 (323)
T 1xea_A          151 KHRHAL---PGDI-------RTFVFDDFIHPLDSVNLSRQCNLDDLHLTYHMS--------------EGLLARLDVQWQT  206 (323)
T ss_dssp             EECBSC---CBCH-------HHHHHTTTHHHHHHHCTTCCCSCTTEEEEEEEE--------------TTEEEEEEEEEEE
T ss_pred             ecCCCC---cccc-------hhhhhhcceeHHHHHHHHhCCCceEEEEEEeec--------------CCceEEEEEEEcC
Confidence            433211   1222       578999999999999999997679999876432              1355677778877


Q ss_pred             Cc-EEEEEEEEeecCCCCceEEEEEecCCeeeeecccceeeeecccCCccceEEeeccCccccccCCCCCCCHHHHHHHH
Q 017143          245 GS-RGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAEDDRIEYEGLHHGSSYLEHLNFL  323 (376)
Q Consensus       245 G~-~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~  323 (376)
                      |. .+++.+++  .......+++|+|++|++.++.......+....   ........+..     ......+..++++|+
T Consensus       207 g~~~~~~~~~~--~~~~~~~~~~i~G~~G~i~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~f~  276 (323)
T 1xea_A          207 GDTLLHASMNR--QFGITTEHVTASYDNVAYLFDSFTQGKMWRDNQ---ESRVALKDWTP-----MLASKGFDAMVQDWL  276 (323)
T ss_dssp             TTEEEEEEEET--TBSSCEEEEEEEETTEEEEESSSSEEEEEETTE---EEEEECCTTCC-----HHHHTTHHHHHHHHH
T ss_pred             CCEEEEEEEEe--cCCCceEEEEEEECCcEEEEecCcccceEeecc---CCccccCCcCc-----hhhhccHHHHHHHHH
Confidence            74 66655443  223345589999999999987544321111100   00000011110     011245668999999


Q ss_pred             HHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 017143          324 SAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKG  358 (376)
Q Consensus       324 ~~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~g  358 (376)
                      ++|+  ++.++.++++++++++++++|+++|+++|
T Consensus       277 ~~i~--~g~~~~~~~~d~l~~~~i~~a~~~s~~~g  309 (323)
T 1xea_A          277 QVAA--AGKLPTHIIERNLASHQLAEAICQQITQQ  309 (323)
T ss_dssp             HHHH--HTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH--cCCCCCCCHHHHHHHHHHHHHHHHHhhhc
Confidence            9998  55567789999999999999999999988

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=100.00  E-value=8.3e-47  Score=348.62  Aligned_cols=310  Identities=16%  Similarity=0.243  Sum_probs=231.9

Q ss_pred             CCCCCceeEEEEeCChhhHH-HHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEE
Q 017143            1 MAANDTVKYGIIGMGMMGRE-HFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVV   79 (376)
Q Consensus         1 m~~~~~~~v~iiG~G~~g~~-~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~   79 (376)
                      |+ |+++||||||+|.+|.. |++.+.+.  +++++++|||++++   +++++++++|++  .|++++++  ++++|+|+
T Consensus         1 m~-m~~~~vgiiG~G~~g~~~~~~~l~~~--~~~~lvav~d~~~~---~~~~~~~~~g~~--~~~~~~~l--~~~~D~V~   70 (319)
T 1tlt_A            1 MS-LKKLRIGVVGLGGIAQKAWLPVLAAA--SDWTLQGAWSPTRA---KALPICESWRIP--YADSLSSL--AASCDAVF   70 (319)
T ss_dssp             -----CEEEEEECCSTHHHHTHHHHHHSC--SSEEEEEEECSSCT---THHHHHHHHTCC--BCSSHHHH--HTTCSEEE
T ss_pred             CC-CCcceEEEECCCHHHHHHHHHHHHhC--CCeEEEEEECCCHH---HHHHHHHHcCCC--ccCcHHHh--hcCCCEEE
Confidence            54 45799999999999996 89988887  89999999999998   566788888976  88999887  35699999


Q ss_pred             EeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceE
Q 017143           80 VSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVK  159 (376)
Q Consensus        80 i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~  159 (376)
                      |+||+..|.+++++||+  +||||+||||++.+.+++++|.+++++ .|+.+++++++||.|.++.+|++|     |++.
T Consensus        71 i~tp~~~h~~~~~~al~--~G~~v~~eKP~~~~~~~~~~l~~~a~~-~g~~~~~~~~~r~~p~~~~~k~~i-----~~~~  142 (319)
T 1tlt_A           71 VHSSTASHFDVVSTLLN--AGVHVCVDKPLAENLRDAERLVELAAR-KKLTLMVGFNRRFAPLYGELKTQL-----ATAA  142 (319)
T ss_dssp             ECSCTTHHHHHHHHHHH--TTCEEEEESSSCSSHHHHHHHHHHHHH-TTCCEEEECGGGGCHHHHHHTTTG-----GGCC
T ss_pred             EeCCchhHHHHHHHHHH--cCCeEEEeCCCCCCHHHHHHHHHHHHH-cCCeEEEeeecccCHHHHHHHHHh-----CCCc
Confidence            99999999999999999  999999999999999999999999954 599999999999999999999986     4454


Q ss_pred             EEEEeeccCCcccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCccccCCCCCcccccEEEE
Q 017143          160 MVAIREHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVI  239 (376)
Q Consensus       160 ~~~~~~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~  239 (376)
                      .++....+..      .|.  ....+|.++|+|+|.+|+++||+|. +.+|++......            +.+|...++
T Consensus       143 ~i~~~~~~~~------~~~--p~~~~g~l~d~g~H~id~~~~l~G~-~~~V~a~~~~~~------------~~~d~~~~~  201 (319)
T 1tlt_A          143 SLRMDKHRSN------SVG--PHDLYFTLLDDYLHVVDTALWLSGG-KASLDGGTLLTN------------DAGEMLFAE  201 (319)
T ss_dssp             EEEEEECCSS------CCC--SSCHHHHHHHTHHHHHHHHHHHTTT-CCCEEEEEEEEC------------TTCCEEEEE
T ss_pred             EEEEEecCCC------ccC--CCCCCceeecccccHHHHHHHHcCC-CeEEEEEEEecC------------CCCcEEEEE
Confidence            5544322211      110  1123578999999999999999994 599998754320            234667888


Q ss_pred             EEecCCcEEEEEEEEeecCCCCceEEEEEecCCeeeeecccceeeeecccCCccceEEeeccCccccccCCCCCCCHHHH
Q 017143          240 VEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAEDDRIEYEGLHHGSSYLEH  319 (376)
Q Consensus       240 l~~~~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  319 (376)
                      ++|++|. +++..++.........+++|+|++|++.++.... +....  .+  ... ...... .. .......+..++
T Consensus       202 ~~~~~g~-~~~~~~~~~~~~~~~~~~~i~G~~G~i~~~~~~~-~~~~~--~~--~~~-~~~~~~-~~-~~~~~~~~~~~~  272 (319)
T 1tlt_A          202 HHFSAGP-LQITTCMHRRAGSQRETVQAVTDGALIDITDMRE-WREER--GQ--GVV-HKPIPG-WQ-STLEQRGFVGCA  272 (319)
T ss_dssp             EEEEETT-EEEEEEEESSSSCCCEEEEEEETTEEEEEETTTE-EEEES--SS--CEE-ECCCCT-TC-CHHHHTTHHHHH
T ss_pred             EEEcCCC-EEEEEEEeccCCCCcEEEEEEECCCEEEEecCce-EEEec--CC--cee-cccCCC-Cc-cccccccHHHHH
Confidence            8888886 5555555444333456899999999999875443 22211  11  110 000000 00 000124566789


Q ss_pred             HHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCE
Q 017143          320 LNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRF  360 (376)
Q Consensus       320 ~~f~~~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~g~~  360 (376)
                      ++|+++|+  ++.++.++++++++++++++|+++|+++|++
T Consensus       273 ~~F~~~i~--~g~~~~~~~~~~~~~~~i~~a~~~Sa~~g~~  311 (319)
T 1tlt_A          273 RHFIECVQ--NQTVPQTAGEQAVLAQRIVDKIWRDAMSEEG  311 (319)
T ss_dssp             HHHHHHHH--HTCCCTTSGGGGSHHHHHHHHHHHHHTC---
T ss_pred             HHHHHHHh--cCCCCCCCHHHHHHHHHHHHHHHHHhhcCCC
Confidence            99999998  5566789999999999999999999999875

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=100.00  E-value=3.2e-47  Score=349.17  Aligned_cols=291  Identities=14%  Similarity=0.173  Sum_probs=233.6

Q ss_pred             CceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHh--------hCCCC
Q 017143            5 DTVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELL--------DSGLC   75 (376)
Q Consensus         5 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--------~~~~~   75 (376)
                      +|+||||||+ |++|..|+++++..   +.++++|||+++++   + .++++++. ++.|+|+++++        +++++
T Consensus         2 ~mirvgiIG~gG~i~~~h~~~l~~~---~~~lvav~d~~~~~---~-~~~~~~~~-~~~~~~~~~ll~~~~~l~~~~~~v   73 (312)
T 3o9z_A            2 HMTRFALTGLAGYIAPRHLKAIKEV---GGVLVASLDPATNV---G-LVDSFFPE-AEFFTEPEAFEAYLEDLRDRGEGV   73 (312)
T ss_dssp             -CCEEEEECTTSSSHHHHHHHHHHT---TCEEEEEECSSCCC---G-GGGGTCTT-CEEESCHHHHHHHHHHHHHTTCCC
T ss_pred             CceEEEEECCChHHHHHHHHHHHhC---CCEEEEEEcCCHHH---H-HHHhhCCC-CceeCCHHHHHHHhhhhcccCCCC
Confidence            4799999999 68999999999886   68999999999874   2 34555544 37999999999        78899


Q ss_pred             CEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCC
Q 017143           76 DVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSI  155 (376)
Q Consensus        76 D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~i  155 (376)
                      |+|+||||+..|++++++||+  +||||+||||++.+.+|+++|++++++ +|+.+++++++||.|.++++|++|++|  
T Consensus        74 D~V~I~tP~~~H~~~~~~al~--aGkhVl~EKPla~~~~ea~~l~~~a~~-~g~~~~v~~~~R~~p~~~~~k~~i~~g--  148 (312)
T 3o9z_A           74 DYLSIASPNHLHYPQIRMALR--LGANALSEKPLVLWPEEIARLKELEAR-TGRRVYTVLQLRVHPSLLALKERLGQE--  148 (312)
T ss_dssp             SEEEECSCGGGHHHHHHHHHH--TTCEEEECSSSCSCHHHHHHHHHHHHH-HCCCEEECCGGGGCHHHHHHHHHHHTC--
T ss_pred             cEEEECCCchhhHHHHHHHHH--CCCeEEEECCCCCCHHHHHHHHHHHHH-cCCEEEEEeehhcCHHHHHHHHHHHcC--
Confidence            999999999999999999999  999999999999999999999999955 599999999999999999999999999  


Q ss_pred             CceEEEEEeeccCCcccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCccccCCCCCccccc
Q 017143          156 GQVKMVAIREHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDN  235 (376)
Q Consensus       156 G~i~~~~~~~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~  235 (376)
                      |+|..+++.+..........+|+.+...+||+++|+|+|.+|+++||+| +|.+|++..                +.+|.
T Consensus       149 G~i~~v~~~~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~id~~~~l~G-~~~~v~~~~----------------~~~d~  211 (312)
T 3o9z_A          149 KGAKDVVLTYVTGRGKWYGKSWKVDEAKSGGLATNIGIHFFDLLAWLFG-RALHVEVHA----------------RTPTV  211 (312)
T ss_dssp             CSCEEEEEEEEECCCTTGGGSGGGCHHHHCCHHHHTTHHHHHHHHHHHC-CEEEEEEEE----------------ECSSE
T ss_pred             CCEEEEEEEEEccCCCccccccccCcccCCCeeeecccCHHHHHHHHhC-CCeEEEEEe----------------cCCce
Confidence            9999999876443222234678888778899999999999999999999 799998752                35688


Q ss_pred             EEEEEEecCCcEEEEEEEEeecCCCCceEEEEEecCCeeeeecccceeeeecccCCccceEEeeccCccccccCCCCCCC
Q 017143          236 AYVIVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAEDDRIEYEGLHHGSS  315 (376)
Q Consensus       236 ~~~~l~~~~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (376)
                      +.++|+|+||.+..+ .+..   .....+++|+|++|++.....+.              ++..+.           ..+
T Consensus       212 ~~~~l~~~~g~v~~~-~s~~---~~~~~~~~v~G~~G~~~~~~~d~--------------qe~~l~-----------~g~  262 (312)
T 3o9z_A          212 NAGYLELEGARVRWF-LSID---PSFVPEPLRRQGKRTYRSIAVDG--------------EEVEFS-----------EGF  262 (312)
T ss_dssp             EEEEEEETTEEEEEE-EESC---GGGSCHHHHTTTCCEEEEEEETT--------------EEEECC-----------TTT
T ss_pred             EEEEEEECCCcEEEE-EEec---CCCCCeEEEEecCcEEEEEeecc--------------cHHHHh-----------cCC
Confidence            999999999987654 3322   22333689999999997542211              111111           111


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 017143          316 YLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKG  358 (376)
Q Consensus       316 ~~~l~~f~~~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~g  358 (376)
                      ......++..++  .+.  ..+++++..+++++++++.|..++
T Consensus       263 ~~~h~~~~~~i~--~g~--~~g~~~~~~~~~~~~~ir~~~~~~  301 (312)
T 3o9z_A          263 TDLHTEVYRKTL--AGE--GFGLDEAAEAIRVAALLRTLPLSQ  301 (312)
T ss_dssp             TSCHHHHHHHHH--TTC--CEEHHHHHHHHHHHHHHTTCCCCC
T ss_pred             hhhhHHHHHHHH--cCC--CCChHHhHHHHHHHHHHhcCCCcC
Confidence            123458888887  433  349999999999999999775544

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=100.00  E-value=4.5e-41  Score=305.93  Aligned_cols=286  Identities=14%  Similarity=0.108  Sum_probs=216.0

Q ss_pred             CC-CCCceeEEEEeCChhhHHHHHHhhhhc-CCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEE
Q 017143            1 MA-ANDTVKYGIIGMGMMGREHFINLHHLR-SQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVV   78 (376)
Q Consensus         1 m~-~~~~~~v~iiG~G~~g~~~~~~~~~~~-~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V   78 (376)
                      |+ +++++||||||+|.+|..|+..+.... .+++++++|+|++..        ++++|++   |.|+++|++++++|+|
T Consensus         1 M~~~~~~~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~--------a~~~g~~---~~~~~ell~~~~vD~V   69 (294)
T 1lc0_A            1 MITNSGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRREL--------GSLDEVR---QISLEDALRSQEIDVA   69 (294)
T ss_dssp             CCCCCCSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCC--------CEETTEE---BCCHHHHHHCSSEEEE
T ss_pred             CCCCCCcceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHH--------HHHcCCC---CCCHHHHhcCCCCCEE
Confidence            63 556899999999999999999987621 178999999998642        3456754   5899999999889999


Q ss_pred             EEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCC--C
Q 017143           79 VVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSI--G  156 (376)
Q Consensus        79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~i--G  156 (376)
                      +|+||+..|++++++||+  +||||+||||++.+.+|+++|.+++++ +|+.+++++++||.|.++.+|+++.+|.|  |
T Consensus        70 ~i~tp~~~H~~~~~~al~--aGkhVl~EKPla~~~~ea~~l~~~a~~-~g~~~~~~~~~r~~p~~~~~~~~i~~g~i~~g  146 (294)
T 1lc0_A           70 YICSESSSHEDYIRQFLQ--AGKHVLVEYPMTLSFAAAQELWELAAQ-KGRVLHEEHVELLMEEFEFLRREVLGKELLKG  146 (294)
T ss_dssp             EECSCGGGHHHHHHHHHH--TTCEEEEESCSCSCHHHHHHHHHHHHH-TTCCEEEECGGGGSHHHHHHHHHHTTCCEEEE
T ss_pred             EEeCCcHhHHHHHHHHHH--CCCcEEEeCCCCCCHHHHHHHHHHHHH-hCCEEEEEEhHhccHHHHHHHHHHhcCCeeEE
Confidence            999999999999999999  999999999999999999999999955 59999999999999999999999998877  4


Q ss_pred             ceEEEEEeeccCCcccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCccccCCCCCcccccE
Q 017143          157 QVKMVAIREHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNA  236 (376)
Q Consensus       157 ~i~~~~~~~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~  236 (376)
                      ++...     ....   .+.|+.+.       ...|+|.++++++||| +|..|.+......           ....|..
T Consensus       147 ~~~~~-----~~~~---~~~~~~~~-------~~~Gi~~l~~~~~l~G-~~~~v~a~~~~~~-----------~~~~~~~  199 (294)
T 1lc0_A          147 SLRFT-----ASPL---EEERFGFP-------AFSGISRLTWLVSLFG-ELSLISATLEERK-----------EDQYMKM  199 (294)
T ss_dssp             EEEEE-----ESCC---CHHHHCCH-------HHHTHHHHHHHHHHHC-SCEEEEEEEEEEG-----------GGTEEEE
T ss_pred             EEEEe-----cCCC---ChhhccCh-------hhcCccHHHHHHHhcC-CceEEEEEEeecC-----------ccccccE
Confidence            33221     1111   12222111       1247999999999999 6888888654211           1345788


Q ss_pred             EEEEEecCCcEEEEEEEEeecCCCCceEEEEEecCCeeeeecccceeeeecccCCccceEEeeccCccccccCCCCCCCH
Q 017143          237 YVIVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAEDDRIEYEGLHHGSSY  316 (376)
Q Consensus       237 ~~~l~~~~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (376)
                      .+.+++.+|..+++..+.. .......++++.+++|.+....      .                      .+ ..+.++
T Consensus       200 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~------~----------------------~~-~~~~~~  249 (294)
T 1lc0_A          200 TVQLETQNKGLLSWIEEKG-PGLKRNRYVNFQFTSGSLEEVP------S----------------------VG-VNKNIF  249 (294)
T ss_dssp             EEEEECTTSCEEEEEEEEC-TTCCCEEEEEEEESSCEECCCC------C----------------------CS-CCTTHH
T ss_pred             EEEEECCCCceEEEEeccc-cccCCCcEEEEEecCCeeEEcC------C----------------------CC-CcCcee
Confidence            9999999999887653322 2233455899999998764210      0                      01 123444


Q ss_pred             HH-HHHHHHHHHhcCCCCCC-CCHHH--HHHHHHHHHHHHHHHHcCC
Q 017143          317 LE-HLNFLSAIRAKGAKVPA-VDLQD--GLISVAIGVAAQLSIEKGR  359 (376)
Q Consensus       317 ~~-l~~f~~~i~~~~~~~~~-~~~~d--~~~~~~ii~a~~~S~~~g~  359 (376)
                      .+ +++|+++|+  ++++++ ++.++  +++++++++|+++|+++++
T Consensus       250 ~~~~~~F~~~i~--~~~~~~~~~~~~~~~~~~l~~~~ai~~s~~~~~  294 (294)
T 1lc0_A          250 LKDQDIFVQKLL--DQVSAEDLAAEKKRIMHCLGLASDIQKLCHQKK  294 (294)
T ss_dssp             HHHHHHHHHHHT--TCSCHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             hHhHHHHHHHHc--cCCCchhcChHHhhhhHHHHHHHHHHHHhhcCC
Confidence            45 799999998  555433 57777  9999999999999998753

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=100.00  E-value=4.1e-31  Score=246.24  Aligned_cols=151  Identities=15%  Similarity=0.204  Sum_probs=127.1

Q ss_pred             CCC-CCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEE
Q 017143            1 MAA-NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVV   79 (376)
Q Consensus         1 m~~-~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~   79 (376)
                      |++ .+++||||||+| +|+.|++++.++. ++++|+||||++++   ++++++++||++  .|+|+++|+++  +|+|+
T Consensus         1 M~~~~~~~rv~VvG~G-~g~~h~~a~~~~~-~~~elvav~~~~~~---~a~~~a~~~gv~--~~~~~~~l~~~--~D~v~   71 (372)
T 4gmf_A            1 MPSASPKQRVLIVGAK-FGEMYLNAFMQPP-EGLELVGLLAQGSA---RSRELAHAFGIP--LYTSPEQITGM--PDIAC   71 (372)
T ss_dssp             ------CEEEEEECST-TTHHHHHTTSSCC-TTEEEEEEECCSSH---HHHHHHHHTTCC--EESSGGGCCSC--CSEEE
T ss_pred             CCCCCCCCEEEEEehH-HHHHHHHHHHhCC-CCeEEEEEECCCHH---HHHHHHHHhCCC--EECCHHHHhcC--CCEEE
Confidence            644 468999999999 6999999998872 47999999999998   788999999987  89999999975  99999


Q ss_pred             EeCCCCcc----HHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHH---HHc
Q 017143           80 VSTPNMTH----YQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQI---VKS  152 (376)
Q Consensus        80 i~t~~~~h----~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~---i~~  152 (376)
                      |+||+..|    ++++++||+  +|||||||||+  +.+|+++|+++|+ ++|+.++||+++||.|.++++.+.   +..
T Consensus        72 i~~p~~~h~~~~~~~a~~al~--aGkhVl~EKPl--~~~ea~~l~~~A~-~~g~~~~v~~~yr~~p~vr~~i~~~~~l~~  146 (372)
T 4gmf_A           72 IVVRSTVAGGAGTQLARHFLA--RGVHVIQEHPL--HPDDISSLQTLAQ-EQGCCYWINTFYPHTRAGRTWLRDAQQLRR  146 (372)
T ss_dssp             ECCC--CTTSHHHHHHHHHHH--TTCEEEEESCC--CHHHHHHHHHHHH-HHTCCEEEECSGGGSHHHHHHHHHHHHHHH
T ss_pred             EECCCcccchhHHHHHHHHHH--cCCcEEEecCC--CHHHHHHHHHHHH-HcCCEEEEcCcccCCHHHHHHHHHHHHHHh
Confidence            99999998    999999999  99999999997  7899999999995 559999999999999998776443   445


Q ss_pred             CCCCceEEEEEee
Q 017143          153 GSIGQVKMVAIRE  165 (376)
Q Consensus       153 g~iG~i~~~~~~~  165 (376)
                      +..+++.++++.+
T Consensus       147 ~~~~~~~~i~~~~  159 (372)
T 4gmf_A          147 CLAKTPPVVHATT  159 (372)
T ss_dssp             HHTSCCSEEEEEE
T ss_pred             hccCCceEEEEEe
Confidence            5567888887743

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=99.96  E-value=7.2e-31  Score=239.37  Aligned_cols=229  Identities=14%  Similarity=0.070  Sum_probs=155.8

Q ss_pred             CCCCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEE
Q 017143            1 MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         1 m~~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      |+.|+++||||||+|.+|+.|++.+.+.  ++++|++|||+++++   +++    +|++   |.+++++++.+++|+|+|
T Consensus         4 M~~M~~irv~IIG~G~iG~~~~~~l~~~--~~~elvav~d~~~~~---~~~----~g~~---~~~~~~l~~~~~~DvVii   71 (304)
T 3bio_A            4 MTDDKKIRAAIVGYGNIGRYALQALREA--PDFEIAGIVRRNPAE---VPF----ELQP---FRVVSDIEQLESVDVALV   71 (304)
T ss_dssp             ----CCEEEEEECCSHHHHHHHHHHHHC--TTEEEEEEECC--------------CCTT---SCEESSGGGSSSCCEEEE
T ss_pred             CccCCCCEEEEECChHHHHHHHHHHhcC--CCCEEEEEEcCCHHH---HHH----cCCC---cCCHHHHHhCCCCCEEEE
Confidence            6666789999999999999999999887  899999999999873   332    6754   455666666567999999


Q ss_pred             eCCCCccHHHHHHHHcCCCCCeEEEecCC-CCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceE
Q 017143           81 STPNMTHYQILMDIINHPKPHHVLVEKPL-CTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVK  159 (376)
Q Consensus        81 ~t~~~~h~~~~~~al~~~~g~~Vl~EKP~-a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~  159 (376)
                      |||+..|.+++.+|++  +||||+||||+ +.+.+++++|.+++++ .|+.+++++  ||.|.+..++++|++|.+|++.
T Consensus        72 atp~~~h~~~~~~al~--aG~~Vi~ekP~~a~~~~~~~~l~~~a~~-~g~~~~v~~--~~~p~~~~~~~~i~~g~lG~~~  146 (304)
T 3bio_A           72 CSPSREVERTALEILK--KGICTADSFDIHDGILALRRSLGDAAGK-SGAAAVIAS--GWDPGSDSVVRTLMQAIVPKGI  146 (304)
T ss_dssp             CSCHHHHHHHHHHHHT--TTCEEEECCCCGGGHHHHHHHHHHHHHH-HTCEEECSC--BBTTBHHHHHHHHHHHHSCEEE
T ss_pred             CCCchhhHHHHHHHHH--cCCeEEECCCCCCCCHHHHHHHHHHHHh-CCCEEEEeC--CCCHHHHHHHHHHHCCCCCCcE
Confidence            9999999999999999  89999999997 8999999999999954 588999997  9999999999999999999998


Q ss_pred             EEEEeeccCCcccccCccccccccCCcccc------cccccHHHHHHHHh---CCCCeEEEEecccccccCccccCCCCC
Q 017143          160 MVAIREHRFPFLVKVNDWNRFNENTGGTLV------EKCCHFFDLMRLFV---GSNPMRVMASGAVDVNHKDEMYNGKVP  230 (376)
Q Consensus       160 ~~~~~~~~~~~~~~~~~w~~~~~~~gG~l~------d~g~H~ld~~~~l~---G~~~~~V~a~~~~~~~~~~~~~~~~~~  230 (376)
                      .+.. +......+....|+...  +.+.+.      +.++|..+  +++.   |.++.+|++.....+ .... ......
T Consensus       147 ~~~~-~~~~~~~~~~~~~r~~~--g~~~~~~~~~p~~~~~h~~~--~~~~~~~~~~~~~v~~~i~~~p-~~~~-~~~~~~  219 (304)
T 3bio_A          147 TYTN-FGPGMSMGHTVAVKAID--GVKAALSMTIPLGTGVHRRM--VYVELLPGHNLEEVSAAIKADE-YFVH-DETHVI  219 (304)
T ss_dssp             EEEE-ECSEECHHHHHHHHTST--TEEEEEEEEEECSTTCEEEE--EEEEECTTCCHHHHHHHHHHST-TTTT-SEEEEE
T ss_pred             EEEE-eCCCcchhhHHHHHhCc--CchheEEecCCCCCCcceee--EEEEEcCCCCHHHHHHHHhcCC-ccCC-ceeEEE
Confidence            6653 22222222223454321  111122      23336522  2222   112333433332111 0000 001123


Q ss_pred             cccccEEEEEEecCCcEEEEEEEE
Q 017143          231 DIIDNAYVIVEFENGSRGMLDLCM  254 (376)
Q Consensus       231 ~~~d~~~~~l~~~~G~~~~l~~~~  254 (376)
                      ++||... .++|++|..+++..+.
T Consensus       220 ~~ed~~~-~~~~~~G~~~~~~~s~  242 (304)
T 3bio_A          220 QVDEVDA-LIDMGHGVRMVRKGVS  242 (304)
T ss_dssp             ECSCGGG-GCCCEEEEEEEEEEEE
T ss_pred             EEeeeee-eeccCCceEEEEEecc
Confidence            5678888 9999999998877654

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=99.88  E-value=5.5e-23  Score=193.96  Aligned_cols=149  Identities=18%  Similarity=0.228  Sum_probs=128.5

Q ss_pred             CCCCceeEEEEeCChhhHHHHHHhhhh-------cCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCC
Q 017143            2 AANDTVKYGIIGMGMMGREHFINLHHL-------RSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGL   74 (376)
Q Consensus         2 ~~~~~~~v~iiG~G~~g~~~~~~~~~~-------~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   74 (376)
                      +||+++||||||+|.+|+.++..+.++       ..++++|++|+|+++++   ++.+..  +  ...|+|+++++++++
T Consensus         6 ~MMk~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~---~~~~~~--~--~~~~~d~~ell~d~d   78 (444)
T 3mtj_A            6 QGMKPIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDK---AEALAG--G--LPLTTNPFDVVDDPE   78 (444)
T ss_dssp             CSCSCEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHH---HHHHHT--T--CCEESCTHHHHTCTT
T ss_pred             hhhCcccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHH---hhhhcc--c--CcccCCHHHHhcCCC
Confidence            356789999999999999888766532       13789999999999873   444432  3  258999999999999


Q ss_pred             CCEEEEeCCC-CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEE-EEeeccccCHHHHHHHHHHHc
Q 017143           75 CDVVVVSTPN-MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILV-QVGLEYRYMPPVAKLIQIVKS  152 (376)
Q Consensus        75 ~D~V~i~t~~-~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~-~v~~~~r~~p~~~~~k~~i~~  152 (376)
                      +|+|+++||+ ..|++++++||+  +||||+|||| +.+.+++++|.++|++ +|+.+ +.+...++.|.++.+|+++.+
T Consensus        79 iDvVve~tp~~~~h~~~~~~AL~--aGKhVvtenk-al~a~~~~eL~~~A~~-~gv~l~~Ea~V~~giPii~~LrelL~~  154 (444)
T 3mtj_A           79 IDIVVELIGGLEPARELVMQAIA--NGKHVVTANK-HLVAKYGNEIFAAAQA-KGVMVTFEAAVAGGIPIIKALREGLTA  154 (444)
T ss_dssp             CCEEEECCCSSTTHHHHHHHHHH--TTCEEEECCH-HHHHHHHHHHHHHHHH-HTCCEECGGGSSTTSCHHHHHHTTTTT
T ss_pred             CCEEEEcCCCchHHHHHHHHHHH--cCCEEEECCc-ccCHHHHHHHHHHHHH-hCCeEEEEEeeeCChHHHHHHHHHHhC
Confidence            9999999996 899999999999  9999999999 7899999999999955 48877 568889999999999999999


Q ss_pred             CCCCceEEE
Q 017143          153 GSIGQVKMV  161 (376)
Q Consensus       153 g~iG~i~~~  161 (376)
                      |+||+|..+
T Consensus       155 ~~Ig~I~GI  163 (444)
T 3mtj_A          155 NRIEWLAGI  163 (444)
T ss_dssp             SCEEEEEEE
T ss_pred             CCCceEEEE
Confidence            999999887

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=99.83  E-value=1.2e-20  Score=177.37  Aligned_cols=139  Identities=19%  Similarity=0.264  Sum_probs=113.5

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc-CC--------------------CCCc
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF-DW--------------------PLKV   62 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~-~~--------------------~~~~   62 (376)
                      ++++||||||+|.+|+.|+..+.+.  ++++|++|||++++   +++++++++ |.                    .+..
T Consensus        21 ~k~IRVGIIGaG~iG~~~~~~l~~~--~~veLvAV~D~~~e---ra~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v   95 (446)
T 3upl_A           21 GKPIRIGLIGAGEMGTDIVTQVARM--QGIEVGALSARRLP---NTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAV   95 (446)
T ss_dssp             TCCEEEEEECCSHHHHHHHHHHTTS--SSEEEEEEECSSTH---HHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEE
T ss_pred             CCceEEEEECChHHHHHHHHHHhhC--CCcEEEEEEeCCHH---HHHHHHHHhcCCccccccccchhhhhhhhccCCceE
Confidence            4689999999999999999999887  89999999999998   455555553 40                    1257


Q ss_pred             cCCHHHHhhCCCCCEEEEeCCC-CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCH
Q 017143           63 FPGHQELLDSGLCDVVVVSTPN-MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMP  141 (376)
Q Consensus        63 ~~~~~~~l~~~~~D~V~i~t~~-~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p  141 (376)
                      |+|++++|+++++|+|+++||+ ..|++++++||+  +||||+|+++ ..+..++.+|.++|++ +|+.++++..-+...
T Consensus        96 ~~D~eeLL~d~dIDaVviaTp~p~~H~e~a~~AL~--AGKHVv~~nk-~l~~~eg~eL~~~A~e-~Gvvl~~~~gdqp~~  171 (446)
T 3upl_A           96 TDDNDLILSNPLIDVIIDATGIPEVGAETGIAAIR--NGKHLVMMNV-EADVTIGPYLKAQADK-QGVIYSLGAGDEPSS  171 (446)
T ss_dssp             ESCHHHHHTCTTCCEEEECSCCHHHHHHHHHHHHH--TTCEEEECCH-HHHHHHHHHHHHHHHH-HTCCEEECTTSHHHH
T ss_pred             ECCHHHHhcCCCCCEEEEcCCChHHHHHHHHHHHH--cCCcEEecCc-ccCHHHHHHHHHHHHH-hCCeeeecCCcchHH
Confidence            8999999999999999999987 479999999999  9999999665 4688999999999954 599999988666444


Q ss_pred             HHHHHHHHHHc
Q 017143          142 PVAKLIQIVKS  152 (376)
Q Consensus       142 ~~~~~k~~i~~  152 (376)
                       ...+-++.+.
T Consensus       172 -~~eLv~~a~~  181 (446)
T 3upl_A          172 -CMELIEFVSA  181 (446)
T ss_dssp             -HHHHHHHHHH
T ss_pred             -HHHHHHHHHh
Confidence             3344444443

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=99.83  E-value=7.8e-21  Score=173.41  Aligned_cols=150  Identities=18%  Similarity=0.179  Sum_probs=120.3

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhc------CCCcEEEEEeCCChhhHH---HHHHHHHhcCCCCCccC--CHHHHhhCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLR------SQGVSVVCIADPHLQSRQ---QALKLANAFDWPLKVFP--GHQELLDSGL   74 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~------~~~~~~~~v~d~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~l~~~~   74 (376)
                      |+||||||+|.+|+.|+..+.+..      .++++|++|||+++....   ..+.++.+++.. ..|+  |+++++++++
T Consensus         2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~-~~~~~~d~~~ll~~~~   80 (327)
T 3do5_A            2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETG-MLRDDAKAIEVVRSAD   80 (327)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHS-SCSBCCCHHHHHHHSC
T ss_pred             cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCc-cccCCCCHHHHhcCCC
Confidence            699999999999999999887652      168999999999865321   122233333222 4666  9999999999


Q ss_pred             CCEEEEeCCCCcc----HHHHHHHHcCCCCCeEEEe--cCCCCCHHHHHHHHHHHHhCCCeEE-EEeeccccCHHHHHHH
Q 017143           75 CDVVVVSTPNMTH----YQILMDIINHPKPHHVLVE--KPLCTTVADCKKVVDAARKRPDILV-QVGLEYRYMPPVAKLI  147 (376)
Q Consensus        75 ~D~V~i~t~~~~h----~~~~~~al~~~~g~~Vl~E--KP~a~~~~e~~~l~~~a~~~~~~~~-~v~~~~r~~p~~~~~k  147 (376)
                      +|+|++|||+..|    ++++++||+  +||||+||  ||++   .+.++|.++|++ +|+.+ +.+...++.|.++.+|
T Consensus        81 iDvVv~~tp~~~h~~~a~~~~~~aL~--aGkhVv~~NKkpla---~~~~eL~~~A~~-~g~~~~~ea~v~~g~Pii~~l~  154 (327)
T 3do5_A           81 YDVLIEASVTRVDGGEGVNYIREALK--RGKHVVTSNKGPLV---AEFHGLMSLAER-NGVRLMYEATVGGAMPVVKLAK  154 (327)
T ss_dssp             CSEEEECCCCC----CHHHHHHHHHT--TTCEEEECCSHHHH---HHHHHHHHHHHH-TTCCEECGGGSSTTSCCHHHHH
T ss_pred             CCEEEECCCCcccchhHHHHHHHHHH--CCCeEEecCchhhH---HHHHHHHHHHHh-hCCcEEEEEEeeecCHHHHHHH
Confidence            9999999999999    999999999  99999999  9997   478899999955 47754 5688889999999999


Q ss_pred             HHHHcCCCCceEEEE
Q 017143          148 QIVKSGSIGQVKMVA  162 (376)
Q Consensus       148 ~~i~~g~iG~i~~~~  162 (376)
                      +++..++||+|..+-
T Consensus       155 ~~l~~~~I~~I~GIl  169 (327)
T 3do5_A          155 RYLALCEIESVKGIF  169 (327)
T ss_dssp             TTTTTSCEEEEEEEC
T ss_pred             HHhhCCCccEEEEEE
Confidence            999888888887764

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=99.81  E-value=1.9e-20  Score=171.67  Aligned_cols=131  Identities=11%  Similarity=0.044  Sum_probs=114.1

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      |+++||+|||+|.+|+.|+..+.+.  +++++++++|+++++     +++  +|+  ..|+|+++++  .++|+|+++||
T Consensus         1 M~~irV~IiG~G~mG~~~~~~l~~~--~~~elvav~d~~~~~-----~~~--~gv--~~~~d~~~ll--~~~DvViiatp   67 (320)
T 1f06_A            1 MTNIRVAIVGYGNLGRSVEKLIAKQ--PDMDLVGIFSRRATL-----DTK--TPV--FDVADVDKHA--DDVDVLFLCMG   67 (320)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHTTC--SSEEEEEEEESSSCC-----SSS--SCE--EEGGGGGGTT--TTCSEEEECSC
T ss_pred             CCCCEEEEEeecHHHHHHHHHHhcC--CCCEEEEEEcCCHHH-----hhc--CCC--ceeCCHHHHh--cCCCEEEEcCC
Confidence            3579999999999999999999887  799999999998763     222  564  4789999988  45999999999


Q ss_pred             CCccHHHHHHHHcCCCCCeEEEecCCCCCHHHH-HHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHc
Q 017143           84 NMTHYQILMDIINHPKPHHVLVEKPLCTTVADC-KKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKS  152 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~-~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~  152 (376)
                      +..|.+.+.++++  +|+||+||||++.+.+++ ++|.++++ +++ .+.+.++ ||.|.+..+++++.+
T Consensus        68 ~~~h~~~~~~al~--aG~~Vv~ekp~~~~~~~~~~~l~~~a~-~~~-~v~v~~~-~~~p~~~~l~~~l~~  132 (320)
T 1f06_A           68 SATDIPEQAPKFA--QFACTVDTYDNHRDIPRHRQVMNEAAT-AAG-NVALVST-GWDPGMFSINRVYAA  132 (320)
T ss_dssp             TTTHHHHHHHHHT--TTSEEECCCCCGGGHHHHHHHHHHHHH-HHT-CEEECSC-SBTTBHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHH--CCCEEEECCCCcCCHHHHHHHHHHHHH-hCC-CEEEEec-CChHHHHHHHHHHhh
Confidence            9999999999999  899999999999999999 99999994 434 5666777 999999999999986

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=99.80  E-value=5.8e-20  Score=168.62  Aligned_cols=150  Identities=16%  Similarity=0.152  Sum_probs=117.9

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhhc-----CCCcEEEEEeCCChhhHHH---HHHHHHh---cCCCCCccC---CHHHH
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHLR-----SQGVSVVCIADPHLQSRQQ---ALKLANA---FDWPLKVFP---GHQEL   69 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~~-----~~~~~~~~v~d~~~~~~~~---~~~~~~~---~~~~~~~~~---~~~~~   69 (376)
                      |+++||||||+|.+|+.|+..+.+.+     +.+++|++|+|+++++...   ..++++.   .+++ ..|+   |++++
T Consensus         4 M~~irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~l   82 (331)
T 3c8m_A            4 MKTINLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLD-SLEYESISASEA   82 (331)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGG-GCCSEECCHHHH
T ss_pred             CcEEeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcc-cccCCCCCHHHH
Confidence            56799999999999999999987762     1169999999998764322   1122222   2332 3566   99999


Q ss_pred             hhCCCCCEEEEeCCCC----ccHHHHHHHHcCCCCCeEEE--ecCCCCCHHHHHHHHHHHHhCCCeEE-EEeeccccCHH
Q 017143           70 LDSGLCDVVVVSTPNM----THYQILMDIINHPKPHHVLV--EKPLCTTVADCKKVVDAARKRPDILV-QVGLEYRYMPP  142 (376)
Q Consensus        70 l~~~~~D~V~i~t~~~----~h~~~~~~al~~~~g~~Vl~--EKP~a~~~~e~~~l~~~a~~~~~~~~-~v~~~~r~~p~  142 (376)
                      + ++++|+|++|||+.    .|++++++||+  +||||+|  +||+   ..++++|.++|+++ |+.+ +.+....+.|.
T Consensus        83 l-~~~iDvVv~~t~~~~~~~~~~~~~~~AL~--aGkhVvtanK~pl---a~~~~eL~~~A~~~-gv~~~~ea~vg~giPi  155 (331)
T 3c8m_A           83 L-ARDFDIVVDATPASADGKKELAFYKETFE--NGKDVVTANKSGL---ANFWPEIMEYARSN-NRRIRYEATVAGGVPL  155 (331)
T ss_dssp             H-HSSCSEEEECSCCCSSSHHHHHHHHHHHH--TTCEEEECCCHHH---HHHHHHHHHHHHHH-TCCEECGGGSSTTSCC
T ss_pred             h-CCCCCEEEECCCCCCccchHHHHHHHHHH--CCCeEEecCchhh---HHHHHHHHHHHHHc-CCEEEEEeecccccHH
Confidence            9 88999999999997    89999999999  9999999  4576   57899999999554 7544 44445666799


Q ss_pred             HHHHHHHHHcCCCCceEEE
Q 017143          143 VAKLIQIVKSGSIGQVKMV  161 (376)
Q Consensus       143 ~~~~k~~i~~g~iG~i~~~  161 (376)
                      ++.+|+++..++|++|..+
T Consensus       156 i~~l~~~l~g~~I~~I~GI  174 (331)
T 3c8m_A          156 FSFIDYSVLPSRIKKFRGI  174 (331)
T ss_dssp             HHHHHHHSTTCCCCEEEEE
T ss_pred             HHHHHHHhhcCcccEEEEE
Confidence            9999999998889888775

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=99.77  E-value=3e-19  Score=165.11  Aligned_cols=146  Identities=14%  Similarity=0.221  Sum_probs=117.5

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhhc-CCCcEEEEEeCCChhhHHHHHHHHHhc-CCCCCccCCHHHHhhCC-----CC-
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHLR-SQGVSVVCIADPHLQSRQQALKLANAF-DWPLKVFPGHQELLDSG-----LC-   75 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~~-~~~~~~~~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~-----~~-   75 (376)
                      .+++||||||+|.+|+.|+..+.+.+ ..+++|++|+|++..      .++++| |++  .|++++++++++     ++ 
T Consensus         2 ~k~i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~~------~~~~~~~gi~--~~~~~~e~l~~~~~~~~did   73 (358)
T 1ebf_A            2 TKVVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERS------LISKDFSPLN--VGSDWKAALAASTTKTLPLD   73 (358)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBE------EECSSCSCCS--CTTCHHHHHHTCCCBCCCHH
T ss_pred             CceEEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECChh------hhccccCCCC--ccccHHHHHhcccCCCCCHH
Confidence            46799999999999999999998862 227999999996543      234456 765  678999999875     45 


Q ss_pred             ------------CEEEEeCCCCccHHHHHHHHcCCCCCeEEE--ecCCCCCHHHHHHHHHHHHhCCCeEEE-EeeccccC
Q 017143           76 ------------DVVVVSTPNMTHYQILMDIINHPKPHHVLV--EKPLCTTVADCKKVVDAARKRPDILVQ-VGLEYRYM  140 (376)
Q Consensus        76 ------------D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~--EKP~a~~~~e~~~l~~~a~~~~~~~~~-v~~~~r~~  140 (376)
                                  |+|++|||+..|.....+||+  +||||+|  |||++.+.+++++|. +| +++|+.+. .+....+.
T Consensus        74 ~v~e~~~~~~~~DvVV~~t~~~~~a~~~~~AL~--aGkhVVtaNkkpla~~~~~~~eL~-~A-~~~gv~~~~Ea~vg~gi  149 (358)
T 1ebf_A           74 DLIAHLKTSPKPVILVDNTSSAYIAGFYTKFVE--NGISIATPNKKAFSSDLATWKALF-SN-KPTNGFVYHEATVGAGL  149 (358)
T ss_dssp             HHHHHHTTCSSCEEEEECSCCHHHHTTHHHHHH--TTCEEECCCCGGGSSCHHHHHHHT-CC-CTTCCCEECGGGTTTTS
T ss_pred             HHHHHhhhccCCcEEEEcCCChHHHHHHHHHHH--CCCeEEecCcccccCCHHHHHHHH-HH-HHcCCEEEEccccccCC
Confidence                        799999999999999999999  9999999  999999999999999 99 55676653 33345556


Q ss_pred             HHHHHHHHHHHc-CCCCceEEE
Q 017143          141 PPVAKLIQIVKS-GSIGQVKMV  161 (376)
Q Consensus       141 p~~~~~k~~i~~-g~iG~i~~~  161 (376)
                      |.++.+|+++++ ++|++|..+
T Consensus       150 Pii~~l~~~l~~G~~I~~I~GI  171 (358)
T 1ebf_A          150 PIISFLREIIQTGDEVEKIEGI  171 (358)
T ss_dssp             SCHHHHHHHHHHTCCEEEEEEE
T ss_pred             cHHHHHHHHHHcCCCeEEEEEE
Confidence            999999999965 455655554

>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A*

Probab=99.75  E-value=5.5e-18  Score=152.80  Aligned_cols=206  Identities=15%  Similarity=0.138  Sum_probs=164.6

Q ss_pred             ceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEE-eCCChhhHHHHHHHHHhcCCCCCcc-----CCH------------
Q 017143            6 TVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCI-ADPHLQSRQQALKLANAFDWPLKVF-----PGH------------   66 (376)
Q Consensus         6 ~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v-~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~------------   66 (376)
                      +.||+|+| +|.||..|+..++++  +.++|+++ ++++.+   ++.+.+++|+.+  .+     +++            
T Consensus         3 ~k~i~ILGsTGSIG~~tldVi~~~--~~~~vvaL~a~~n~~---~l~~q~~~f~p~--~v~v~~~~~~~~~l~~~~~G~~   75 (376)
T 3a06_A            3 ERTLVILGATGSIGTQTLDVLKKV--KGIRLIGISFHSNLE---LAFKIVKEFNVK--NVAITGDVEFEDSSINVWKGSH   75 (376)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHS--CSEEEEEEEESSCHH---HHHHHHHHHTCC--EEEECSSCCCCCSSSEEEESTT
T ss_pred             cceEEEECCCCHHHHHHHHHHHhC--CCeEEEEEEccCCHH---HHHHHHHHcCCC--EEEEccHHHHHHHHHHHccCHH
Confidence            37999999 699999999999987  78999999 777777   677778888854  33     344            


Q ss_pred             --HHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEE-ecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHH
Q 017143           67 --QELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLV-EKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPV  143 (376)
Q Consensus        67 --~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~-EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~  143 (376)
                        .+++..+++|+|+++++...|...+++|++  +||+|++ +|  ...+.....+.+++ +++|+.+....+ ++++.+
T Consensus        76 ~l~el~~~~~~D~Vv~AivG~aGL~ptlaAi~--aGK~vaLANK--EsLV~aG~li~~~a-~~~g~~llPVDS-EHsAif  149 (376)
T 3a06_A           76 SIEEMLEALKPDITMVAVSGFSGLRAVLASLE--HSKRVCLANK--ESLVCGGFLVKKKL-KEKGTELIPVDS-EHSAIF  149 (376)
T ss_dssp             HHHHHHHHHCCSEEEECCCSTTHHHHHHHHHH--HCSEEEECCS--HHHHHHHHHHHHHH-HHHCCEEEECSH-HHHHHH
T ss_pred             HHHHHhcCCCCCEEEEEeeCHHHHHHHHHHHH--CCCEEEEeCh--HHHHhhHHHHHHHH-HHcCCEEEEEcc-ccCHHH
Confidence              588887789999999999999999999999  8999999 99  66788888889999 445889988887 999999


Q ss_pred             HHHHHHHHcCCCCceEEEEEeeccCCccc------------c---cCcccccccc--CCcccccccccHHHHHHHHhCCC
Q 017143          144 AKLIQIVKSGSIGQVKMVAIREHRFPFLV------------K---VNDWNRFNEN--TGGTLVEKCCHFFDLMRLFVGSN  206 (376)
Q Consensus       144 ~~~k~~i~~g~iG~i~~~~~~~~~~~~~~------------~---~~~w~~~~~~--~gG~l~d~g~H~ld~~~~l~G~~  206 (376)
                      +.++     +.+++|...-+   .+|+..            +   -++|..-.+-  -+..|++.|.|.++ +.||||-+
T Consensus       150 Q~L~-----~~v~kiiLTAS---GGpFr~~~~~~l~~vt~~~Al~HPnW~MG~KITiDSATmmNKGlEvIE-A~wLF~~~  220 (376)
T 3a06_A          150 QVME-----PEVEKVVLTAS---GGALRDWKISKIDRARPEDVLKHPVWNMGARITVDSATMVNKAFEVLE-AMELFELP  220 (376)
T ss_dssp             HHCC-----SSCSEEEEEEC---CCTTSSSCHHHHTTCCGGGTCCCSSCCCCHHHHHHHHHTHHHHHHHHH-HHHHHTCC
T ss_pred             HHHH-----hhhceEEEecc---CCcccCCCHHHHhhCCHHHhccCCCCCCCCeEEecHHHHHHHHHHHHH-HHHHcCCC
Confidence            9887     45777765443   333221            1   1467654332  36678999999999 99999988


Q ss_pred             CeEEEEecccccccCccccCCCCCcccccEEEEEEecCCcEEE
Q 017143          207 PMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENGSRGM  249 (376)
Q Consensus       207 ~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~G~~~~  249 (376)
                      +.+|.+..+.                .+..+.+++|.||.+..
T Consensus       221 ~~~I~vvvHp----------------qSiIHsmVef~DGsv~A  247 (376)
T 3a06_A          221 FEKIEVKIHR----------------EGLVHGAVVLPDGNVKM  247 (376)
T ss_dssp             GGGEEEEECT----------------TCCEEEEEECTTSCEEE
T ss_pred             hheEEEEECC----------------CCeEEEEEEEcCCcEEE
Confidence            8888887431                36799999999998765

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=99.75  E-value=1.5e-19  Score=166.50  Aligned_cols=146  Identities=15%  Similarity=0.142  Sum_probs=109.0

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC----------------CCccCCHHHH
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP----------------LKVFPGHQEL   69 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~   69 (376)
                      ++||||||+|.+|+.|++.+...  ++++|++|+|++++   .+..+++++|++                +..+++++++
T Consensus         2 ~irVgIiG~G~iG~~~~r~l~~~--~~~elvav~d~~~~---~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l   76 (334)
T 2czc_A            2 KVKVGVNGYGTIGKRVAYAVTKQ--DDMELIGITKTKPD---FEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDL   76 (334)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTC--TTEEEEEEEESSCS---HHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHH
T ss_pred             CcEEEEEeEhHHHHHHHHHHhcC--CCCEEEEEEcCCHH---HHHHHHHhcCccccccccccceeccCCceEEcCcHHHh
Confidence            58999999999999999999888  89999999999876   455666666543                1467899999


Q ss_pred             hhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCH------HHHHHHHHHHHhCCCeEEEEeeccc-cCHH
Q 017143           70 LDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTV------ADCKKVVDAARKRPDILVQVGLEYR-YMPP  142 (376)
Q Consensus        70 l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~------~e~~~l~~~a~~~~~~~~~v~~~~r-~~p~  142 (376)
                      +.  ++|+|++|||+..|++.+.++++  +||||+||||...+.      .+..  .+.. +..++....++... +.|.
T Consensus        77 ~~--~vDvV~~aTp~~~h~~~a~~~l~--aGk~Vi~sap~~~d~~~~~~v~~vn--~~~~-~~~~ii~~~~C~t~~l~P~  149 (334)
T 2czc_A           77 LE--KVDIIVDATPGGIGAKNKPLYEK--AGVKAIFQGGEKADVAEVSFVAQAN--YEAA-LGKNYVRVVSCNTTGLVRT  149 (334)
T ss_dssp             HT--TCSEEEECCSTTHHHHHHHHHHH--HTCEEEECTTSCGGGSSEEECHHHH--GGGG-TTCSEEEECCHHHHHHHHH
T ss_pred             cc--CCCEEEECCCccccHHHHHHHHH--cCCceEeecccccccccceEEeccC--HHHH-hhCCcEEecCcHHHHHHHH
Confidence            96  59999999999999999999999  899999999984211      0111  0112 12245555555444 4588


Q ss_pred             HHHHHHHHHcCCCCceEEEEE
Q 017143          143 VAKLIQIVKSGSIGQVKMVAI  163 (376)
Q Consensus       143 ~~~~k~~i~~g~iG~i~~~~~  163 (376)
                      ++.+++.|++|.+|++..+..
T Consensus       150 ~~~l~~~I~~g~i~ti~a~s~  170 (334)
T 2czc_A          150 LSAIREYADYVYAVMIRRAAD  170 (334)
T ss_dssp             HHHHGGGEEEEEEEEEEESSC
T ss_pred             HHHHHHHhccccEEEEEEecC
Confidence            888887777766666655443

>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A*

Probab=99.73  E-value=3.8e-17  Score=150.42  Aligned_cols=211  Identities=14%  Similarity=0.126  Sum_probs=160.0

Q ss_pred             ceeEEEEeC-ChhhHHHHHHhhhhcCCC-cEEEEE-eCCChhhHHHHHHHHHhcCCCC-Cc-----c-------------
Q 017143            6 TVKYGIIGM-GMMGREHFINLHHLRSQG-VSVVCI-ADPHLQSRQQALKLANAFDWPL-KV-----F-------------   63 (376)
Q Consensus         6 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~-~~~~~v-~d~~~~~~~~~~~~~~~~~~~~-~~-----~-------------   63 (376)
                      |+||+|+|+ |.+|..++..+.++  ++ ++++++ ++++.+   ++.+.+++|+.+. .+     +             
T Consensus         4 m~rI~ILGsTGSIG~~~l~vi~~~--p~~~~v~al~ag~ni~---~l~~~~~~f~~~~v~v~d~~~~~~l~~~l~~~~~~   78 (388)
T 1r0k_A            4 PRTVTVLGATGSIGHSTLDLIERN--LDRYQVIALTANRNVK---DLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVE   78 (388)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHT--GGGEEEEEEEESSCHH---HHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSE
T ss_pred             ceEEEEECCCeEeHHHHHHHHHhC--cCcEEEEEEEcCCCHH---HHHHHHHHcCCcEEEEcChHHHHHHHHHhccCCcE
Confidence            489999999 99999999999888  65 999999 888776   6667777777651 11     1             


Q ss_pred             -----CCHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEe-cCCCCCHHHHHHHHHHHHhCCCeEEEEeecc
Q 017143           64 -----PGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVE-KPLCTTVADCKKVVDAARKRPDILVQVGLEY  137 (376)
Q Consensus        64 -----~~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~E-KP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~  137 (376)
                           ++++++++++ +|+|+.+++...|...+++|++  +||||.++ |+  ..+....+|.++|++ +|+.+...   
T Consensus        79 v~~g~~~~~el~~~~-iDvVV~ai~G~aGl~ptlaAi~--aGK~VvlANKE--~lv~~G~~l~~~A~~-~gv~liPV---  149 (388)
T 1r0k_A           79 AAAGADALVEAAMMG-ADWTMAAIIGCAGLKATLAAIR--KGKTVALANKE--SLVSAGGLMIDAVRE-HGTTLLPV---  149 (388)
T ss_dssp             EEESHHHHHHHHTSC-CSEEEECCCSGGGHHHHHHHHH--TTSEEEECCSH--HHHTTHHHHHHHHHH-HTCEEEEC---
T ss_pred             EEeCccHHHHHHcCC-CCEEEEeCCCHHHHHHHHHHHH--CCCEEEEeCcH--HHHhhHHHHHHHHHH-cCCEEEEe---
Confidence                 1123577777 9999999998899999999999  99999996 96  577888889999954 58887654   


Q ss_pred             ccCHHHHHHHHHHHcCCCCceEEEEEeeccCCccccc---------------Cccccccc--cCCcccccccccHHHHHH
Q 017143          138 RYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKV---------------NDWNRFNE--NTGGTLVEKCCHFFDLMR  200 (376)
Q Consensus       138 r~~p~~~~~k~~i~~g~iG~i~~~~~~~~~~~~~~~~---------------~~w~~~~~--~~gG~l~d~g~H~ld~~~  200 (376)
                        ++....+++.+..+.+++|..+......+++....               ++|..-.+  .-+..+++.|.|.++ +.
T Consensus       150 --Dseh~Ai~q~L~g~~i~~v~~IilTaSGGpfr~~~~~~l~~vt~~~Al~hp~W~mG~KitiDSAtm~NkglevIE-a~  226 (388)
T 1r0k_A          150 --DSEHNAIFQCFPHHNRDYVRRIIITASGGPFRTTSLAEMATVTPERAVQHPNWSMGAKISIDSATMMNKGLELIE-AF  226 (388)
T ss_dssp             --SHHHHHHHHHCCTTCGGGEEEEEEEECCCTTTTCCHHHHTTCCHHHHHC------CHHHHHHHHHTHHHHHHHHH-HH
T ss_pred             --chhHHHHHHHhhCCCccceeEEEEEeecccccCCCHHHHhcCCHHHhccCCCCCCcchhhhHHHHHHcCcCcccc-cc
Confidence              77788999999888888998877655454333211               35665433  225678999999999 99


Q ss_pred             HHhCCCCeEEEEecccccccCccccCCCCCcccccEEEEEEecCCcEEE
Q 017143          201 LFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENGSRGM  249 (376)
Q Consensus       201 ~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~G~~~~  249 (376)
                      ||||.++.+|.+..+.                .+..+.+++|.||.+..
T Consensus       227 ~Lf~~~~~~I~vvvhp----------------qsiihsmV~f~dGsv~a  259 (388)
T 1r0k_A          227 HLFQIPLEKFEILVHP----------------QSVIHSMVEYLDGSILA  259 (388)
T ss_dssp             HHHCCCGGGEEEEECT----------------TCCEEEEEEETTSCEEE
T ss_pred             ccCCCCHHHeeeeech----------------hHeeEEEEEEcCCcEEE
Confidence            9999878888776431                24679999999998765

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=99.73  E-value=1.6e-18  Score=158.16  Aligned_cols=189  Identities=11%  Similarity=0.118  Sum_probs=135.3

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCC--------CcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQ--------GVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCD   76 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~--------~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D   76 (376)
                      +++||||||+|.+|+.|+..+.+.  +        +++|++|+|++.++   ++    .++. ...|+|+++++   ++|
T Consensus         2 k~irvgIiG~G~VG~~~~~~l~~~--~~~l~~~g~~~~lvaV~d~~~~~---~~----~~~~-~~~~~d~~~ll---~iD   68 (332)
T 2ejw_A            2 EALKIALLGGGTVGSAFYNLVLER--AEELSAFGVVPRFLGVLVRDPRK---PR----AIPQ-ELLRAEPFDLL---EAD   68 (332)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT--GGGGGGGTEEEEEEEEECSCTTS---CC----SSCG-GGEESSCCCCT---TCS
T ss_pred             CeeEEEEEcCCHHHHHHHHHHHhC--hhhHhhcCCCEEEEEEEECCHHH---hh----ccCc-ccccCCHHHHh---CCC
Confidence            579999999999999999998876  4        78999999998763   21    2222 25788999999   599


Q ss_pred             EEEEeCCCCc-cHHHHHHHHcCCCCCeEEE--ecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcC
Q 017143           77 VVVVSTPNMT-HYQILMDIINHPKPHHVLV--EKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSG  153 (376)
Q Consensus        77 ~V~i~t~~~~-h~~~~~~al~~~~g~~Vl~--EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g  153 (376)
                      +|++|||+.. |++++++||+  +||||+|  +||++   +++++|.++| +++ ...+.+....+.|.++.+| .+.++
T Consensus        69 vVve~t~~~~~a~~~~~~AL~--aGKhVVtaNkkpla---~~~~eL~~~A-~~~-~~~~Ea~vg~giPii~~l~-~l~~~  140 (332)
T 2ejw_A           69 LVVEAMGGVEAPLRLVLPALE--AGIPLITANKALLA---EAWESLRPFA-EEG-LIYHEASVMAGTPALSFLE-TLRGS  140 (332)
T ss_dssp             EEEECCCCSHHHHHHHHHHHH--TTCCEEECCHHHHH---HSHHHHHHHH-HTT-CEECGGGTTTTSSSHHHHH-HHTTS
T ss_pred             EEEECCCCcHHHHHHHHHHHH--cCCeEEECCchhHH---HHHHHHHHHH-HhC-CeEEEEEcccCCHHHHHHH-HhcCC
Confidence            9999999884 5789999999  9999999  78987   7899999999 553 4555566666679999999 99988


Q ss_pred             CCCceEEEEEeeccCCcccccCcccccc------cc----CCcccccccccH----HHHHHHH-hCC--CCeEEEEecc
Q 017143          154 SIGQVKMVAIREHRFPFLVKVNDWNRFN------EN----TGGTLVEKCCHF----FDLMRLF-VGS--NPMRVMASGA  215 (376)
Q Consensus       154 ~iG~i~~~~~~~~~~~~~~~~~~w~~~~------~~----~gG~l~d~g~H~----ld~~~~l-~G~--~~~~V~a~~~  215 (376)
                      +||+|..+-.-...+ -+.....|..+.      +.    ..++..|+.-++    +.++.++ ||.  ++.+|...+-
T Consensus       141 ~I~~I~gI~nGT~ny-il~~m~~g~~f~~~l~eAq~~GyaE~dP~~Dv~G~d~a~Kl~iLa~~~~G~~~~~~~v~~egi  218 (332)
T 2ejw_A          141 ELLELHGILNGTTLY-ILQEMEKGRTYAEALLEAQRLGYAEADPTLDVEGIDAAHKLTLLARLLVDPGFPFAEVEAQGI  218 (332)
T ss_dssp             EEEEEEEECCHHHHH-HHHHHHTTCCHHHHHHHHHHTTSSCSSCHHHHTTHHHHHHHHHHHHHHTCTTCCGGGCEECCS
T ss_pred             CcceEEEEEeccccc-ccCccccCCCHHHHHHHHHHCCCCCCCCccccCchhHHHHHHHHHHHHhCCCCCHHHeEecCc
Confidence            888887763210000 000111222211      11    135666665444    7788887 896  3466766543

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=99.72  E-value=2.3e-17  Score=150.28  Aligned_cols=153  Identities=12%  Similarity=0.137  Sum_probs=116.4

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhhc----CCCcEEEEEeCCChhh------HHHHHHHHHhcC-CCCCccCCHHHHhhC
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHLR----SQGVSVVCIADPHLQS------RQQALKLANAFD-WPLKVFPGHQELLDS   72 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~~----~~~~~~~~v~d~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~l~~   72 (376)
                      |+++||+|||+|.+|+.++..+.+..    .++++|++|+|++...      .++..+..++++ ++...| ++++++.+
T Consensus         2 Mk~irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~~~~~-d~~e~l~~   80 (325)
T 3ing_A            2 MKEIRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRISDRAF-SGPEDLMG   80 (325)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSCSSBC-CSGGGGTT
T ss_pred             CceEEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCCcccC-CHHHHhcC
Confidence            56899999999999999999887631    2689999999998642      223333444455 431134 78999999


Q ss_pred             CCCCEEEEeCCCCcc----HHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeE-EEEeeccccCHHHHHHH
Q 017143           73 GLCDVVVVSTPNMTH----YQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDIL-VQVGLEYRYMPPVAKLI  147 (376)
Q Consensus        73 ~~~D~V~i~t~~~~h----~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~-~~v~~~~r~~p~~~~~k  147 (376)
                      +++|+|++|||+..|    ++++++||+  +||||.++++. ...++.++|.++|+++ |+. ++.+....+.|.++.+|
T Consensus        81 ~~iDvVVe~T~~~~~~~pa~~~~~~aL~--aGkhVVtaNK~-~la~~~~eL~~lA~~~-g~~~~~Ea~vg~giPii~~l~  156 (325)
T 3ing_A           81 EAADLLVDCTPASRDGVREYSLYRMAFE--SGMNVVTANKS-GLANKWHDIMDSANQN-SKYIRYEATVAGGVPLFSVLD  156 (325)
T ss_dssp             SCCSEEEECCCCCSSSHHHHHHHHHHHH--TTCEEEECCCH-HHHHHHHHHHHHHHHH-TCCEECGGGSSTTSCCHHHHH
T ss_pred             CCCCEEEECCCCccccchHHHHHHHHHH--CCCeEEEcCch-hHHHHHHHHHHHHHHc-CCeEEEEeeecccCHHHHHHH
Confidence            999999999999877    589999999  99999997553 2348999999999554 664 44556667899999999


Q ss_pred             HHHHcCCCCceEEE
Q 017143          148 QIVKSGSIGQVKMV  161 (376)
Q Consensus       148 ~~i~~g~iG~i~~~  161 (376)
                      +++..++|++|..+
T Consensus       157 ~~l~g~~I~~i~Gi  170 (325)
T 3ing_A          157 YSILPSKVKRFRGI  170 (325)
T ss_dssp             HTCTTCCEEEEEEE
T ss_pred             HHhhCCCeeEEEEE
Confidence            99976566665544

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=99.66  E-value=8.8e-17  Score=146.04  Aligned_cols=100  Identities=18%  Similarity=0.210  Sum_probs=88.1

Q ss_pred             CceeEEEEeCChhhHHHHHHhhh-hcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhC---CCCCEEEE
Q 017143            5 DTVKYGIIGMGMMGREHFINLHH-LRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDS---GLCDVVVV   80 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~-~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~D~V~i   80 (376)
                      +++||||||+|.+|..|+..+.+ .  +++++++++|+++++  .++++++++|++ ..++++++++++   +++|+|++
T Consensus         3 ~~irVaIIG~G~iG~~~~~~l~~~~--~~~elvav~d~~~~~--~~~~~a~~~g~~-~~~~~~e~ll~~~~~~~iDvV~~   77 (312)
T 1nvm_B            3 QKLKVAIIGSGNIGTDLMIKVLRNA--KYLEMGAMVGIDAAS--DGLARAQRMGVT-TTYAGVEGLIKLPEFADIDFVFD   77 (312)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHC--SSEEEEEEECSCTTC--HHHHHHHHTTCC-EESSHHHHHHHSGGGGGEEEEEE
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHhhC--cCeEEEEEEeCChhh--hHHHHHHHcCCC-cccCCHHHHHhccCCCCCcEEEE
Confidence            57999999999999999999866 6  899999999999873  256777888875 446789999987   67999999


Q ss_pred             eCCCCccHHHHHHHHcCCC--CCeEEEecCCCC
Q 017143           81 STPNMTHYQILMDIINHPK--PHHVLVEKPLCT  111 (376)
Q Consensus        81 ~t~~~~h~~~~~~al~~~~--g~~Vl~EKP~a~  111 (376)
                      +||+..|.+++.+|++  +  ||||+||||.+.
T Consensus        78 atp~~~h~~~a~~al~--a~~Gk~Vi~ekp~~~  108 (312)
T 1nvm_B           78 ATSASAHVQNEALLRQ--AKPGIRLIDLTPAAI  108 (312)
T ss_dssp             CSCHHHHHHHHHHHHH--HCTTCEEEECSTTCS
T ss_pred             CCChHHHHHHHHHHHH--hCCCCEEEEcCcccc
Confidence            9999999999999999  8  999999999864

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=99.65  E-value=3.2e-16  Score=137.55  Aligned_cols=112  Identities=21%  Similarity=0.194  Sum_probs=95.4

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      +||||||+|.||+.|+..+. .  +++++++++|+++.    ++          ..|+|++++++ +++|+|++|+|++.
T Consensus         1 m~vgiIG~G~mG~~~~~~l~-~--~g~~lv~v~d~~~~----~~----------~~~~~~~~l~~-~~~DvVv~~~~~~~   62 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLE-R--NGFEIAAILDVRGE----HE----------KMVRGIDEFLQ-REMDVAVEAASQQA   62 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-H--TTCEEEEEECSSCC----CT----------TEESSHHHHTT-SCCSEEEECSCHHH
T ss_pred             CEEEEECCCHHHHHHHHHHh-c--CCCEEEEEEecCcc----hh----------hhcCCHHHHhc-CCCCEEEECCCHHH
Confidence            58999999999999999887 4  78999999998853    11          16889999996 56999999999999


Q ss_pred             cHHHHHHHHcCCCCCeEEEecCCCCCHHHH-HHHHHHHHhCCCeEEEEeecccc
Q 017143           87 HYQILMDIINHPKPHHVLVEKPLCTTVADC-KKVVDAARKRPDILVQVGLEYRY  139 (376)
Q Consensus        87 h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~-~~l~~~a~~~~~~~~~v~~~~r~  139 (376)
                      |.+++..+++  +|+||+||||++.+..++ ++|.+++++ +|+.+++..+..-
T Consensus        63 ~~~~~~~~l~--~G~~vv~~~~~~~~~~~~~~~l~~~a~~-~g~~~~i~~~~~g  113 (236)
T 2dc1_A           63 VKDYAEKILK--AGIDLIVLSTGAFADRDFLSRVREVCRK-TGRRVYIASGAIG  113 (236)
T ss_dssp             HHHHHHHHHH--TTCEEEESCGGGGGSHHHHHHHHHHHHH-HCCCEEECCTTCS
T ss_pred             HHHHHHHHHH--CCCcEEEECcccCChHHHHHHHHHHHHh-cCCeEEecCcccc
Confidence            9999999999  999999999999998888 899999954 4777766555433

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=99.55  E-value=3.5e-15  Score=132.90  Aligned_cols=151  Identities=17%  Similarity=0.139  Sum_probs=111.7

Q ss_pred             CCCCCceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC---CCccCCHHHHhhCCCCC
Q 017143            1 MAANDTVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP---LKVFPGHQELLDSGLCD   76 (376)
Q Consensus         1 m~~~~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~D   76 (376)
                      |+ |+++||+|+|+ |.||+.++..+...  ++++|++++|+++++.. .+.+.+..++.   +..+++++++++  ++|
T Consensus         1 ~~-~~~mkV~V~Ga~G~mG~~~~~~~~~~--~~~elva~~d~~~~~~~-g~d~~~~~g~~~~~v~~~~dl~~~l~--~~D   74 (273)
T 1dih_A            1 MH-DANIRVAIAGAGGRMGRQLIQAALAL--EGVQLGAALEREGSSLL-GSDAGELAGAGKTGVTVQSSLDAVKD--DFD   74 (273)
T ss_dssp             -C-CCBEEEEETTTTSHHHHHHHHHHHHS--TTEECCCEECCTTCTTC-SCCTTCSSSSSCCSCCEESCSTTTTT--SCS
T ss_pred             CC-CCCcEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEecCchhhh-hhhHHHHcCCCcCCceecCCHHHHhc--CCC
Confidence            55 45799999998 99999999988877  89999999998764210 11111112211   236889999986  489


Q ss_pred             EEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCC
Q 017143           77 VVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIG  156 (376)
Q Consensus        77 ~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG  156 (376)
                      +|+.+|+|..|.+++..|++  +|+||+|+|| +.+.++..+|.+++ ++.++.+..++....+...+.++++.+  .++
T Consensus        75 vVIDft~p~~~~~~~~~a~~--~G~~vVigTt-G~~~e~~~~L~~~a-~~~~vv~a~N~siGvn~~~~l~~~aa~--~~~  148 (273)
T 1dih_A           75 VFIDFTRPEGTLNHLAFCRQ--HGKGMVIGTT-GFDEAGKQAIRDAA-ADIAIVFAANFSVGVNVMLKLLEKAAK--VMG  148 (273)
T ss_dssp             EEEECSCHHHHHHHHHHHHH--TTCEEEECCC-CCCHHHHHHHHHHT-TTSCEEECSCCCHHHHHHHHHHHHHHH--HHT
T ss_pred             EEEEcCChHHHHHHHHHHHh--CCCCEEEECC-CCCHHHHHHHHHhc-CCCCEEEEecCcHHHHHHHHHHHHHHH--hcC
Confidence            99999999999999999999  9999999999 68899999999998 555666655555555555555555544  243


Q ss_pred             ---ceEEEEE
Q 017143          157 ---QVKMVAI  163 (376)
Q Consensus       157 ---~i~~~~~  163 (376)
                         +|..++.
T Consensus       149 ~~~dieiiE~  158 (273)
T 1dih_A          149 DYTDIEIIEA  158 (273)
T ss_dssp             TTSEEEEEEE
T ss_pred             CCCCEEEEEe
Confidence               6666665

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=99.51  E-value=4.2e-13  Score=120.60  Aligned_cols=182  Identities=15%  Similarity=0.148  Sum_probs=127.0

Q ss_pred             CCceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeC
Q 017143            4 NDTVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         4 ~~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t   82 (376)
                      .+++||+|+|+ |.+|+.|+..+.+.   ++++++.+++....       .+.+|++  +|+|++++++++++|+|+|++
T Consensus         5 ~~~~rVaViG~sG~~G~~~~~~l~~~---g~~~V~~V~p~~~g-------~~~~G~~--vy~sl~el~~~~~~D~viI~t   72 (288)
T 2nu8_A            5 DKNTKVICQGFTGSQGTFHSEQAIAY---GTKMVGGVTPGKGG-------TTHLGLP--VFNTVREAVAATGATASVIYV   72 (288)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHH---TCEEEEEECTTCTT-------CEETTEE--EESSHHHHHHHHCCCEEEECC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHC---CCeEEEEeCCCccc-------ceeCCee--ccCCHHHHhhcCCCCEEEEec
Confidence            45799999998 99999999998876   57888888875310       1146766  899999999854599999999


Q ss_pred             CCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeecc--------c---cCHHHHHHHHHHH
Q 017143           83 PNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEY--------R---YMPPVAKLIQIVK  151 (376)
Q Consensus        83 ~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~--------r---~~p~~~~~k~~i~  151 (376)
                      |+..|.+.+.+|++  +|++++++.+...+.++.++|.+++++ .++.+ +|.|+        +   +.|..     ..+
T Consensus        73 P~~~~~~~~~ea~~--~Gi~~iVi~t~G~~~~~~~~l~~~A~~-~gv~l-iGPNc~Gi~~p~~~~~~~~~~~-----~~~  143 (288)
T 2nu8_A           73 PAPFCKDSILEAID--AGIKLIITITEGIPTLDMLTVKVKLDE-AGVRM-IGPNTPGVITPGECKIGIQPGH-----IHK  143 (288)
T ss_dssp             CGGGHHHHHHHHHH--TTCSEEEECCCCCCHHHHHHHHHHHHH-HTCEE-ECSSCCEEEETTTEEEESSCTT-----SCC
T ss_pred             CHHHHHHHHHHHHH--CCCCEEEEECCCCCHHHHHHHHHHHHH-cCCEE-EecCCcceecCCcceeEecccC-----CCC
Confidence            99999999999999  999999999988999999999999955 58765 56555        2   33321     112


Q ss_pred             cCCCCceEEEEEeeccCCccc------ccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEE
Q 017143          152 SGSIGQVKMVAIREHRFPFLV------KVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMA  212 (376)
Q Consensus       152 ~g~iG~i~~~~~~~~~~~~~~------~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a  212 (376)
                         -|+|-.+.-   +.....      ....|....-.+-|.-.+.++|..|++.||.+++-+++-.
T Consensus       144 ---~G~i~~vsq---SG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~l~~D~~t~~I~  204 (288)
T 2nu8_A          144 ---PGKVGIVSR---SGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIV  204 (288)
T ss_dssp             ---EEEEEEEES---CHHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEE
T ss_pred             ---CCCEEEEEC---cHHHHHHHHHHHHhcCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEE
Confidence               244443332   111111      1122221112233334455899999999999965444433

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=99.37  E-value=6.2e-14  Score=119.53  Aligned_cols=101  Identities=10%  Similarity=0.050  Sum_probs=83.4

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      +..|++|||+|.+|..|+..+... . +++++|++|.++++   ..+...  |+++..++++++++++ ++|+|+||+|+
T Consensus        79 ~~~rV~IIGaG~~G~~la~~~~~~-~-g~~iVg~~D~dp~k---~g~~i~--gv~V~~~~dl~ell~~-~ID~ViIA~Ps  150 (211)
T 2dt5_A           79 RKWGLCIVGMGRLGSALADYPGFG-E-SFELRGFFDVDPEK---VGRPVR--GGVIEHVDLLPQRVPG-RIEIALLTVPR  150 (211)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCC-S-SEEEEEEEESCTTT---TTCEET--TEEEEEGGGHHHHSTT-TCCEEEECSCH
T ss_pred             CCCEEEEECccHHHHHHHHhHhhc-C-CcEEEEEEeCCHHH---Hhhhhc--CCeeecHHhHHHHHHc-CCCEEEEeCCc
Confidence            468999999999999998864443 3 89999999999883   322222  4444457899999998 89999999999


Q ss_pred             CccHHHHHHHHcCCCCCe-EEEecCCCCCHHH
Q 017143           85 MTHYQILMDIINHPKPHH-VLVEKPLCTTVAD  115 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~~-Vl~EKP~a~~~~e  115 (376)
                      ..|.+++..+++  +|++ |++|||+++++.+
T Consensus       151 ~~~~ei~~~l~~--aGi~~Ilnf~P~~l~vp~  180 (211)
T 2dt5_A          151 EAAQKAADLLVA--AGIKGILNFAPVVLEVPK  180 (211)
T ss_dssp             HHHHHHHHHHHH--HTCCEEEECSSSCCCCCT
T ss_pred             hhHHHHHHHHHH--cCCCEEEECCcccccCCC
Confidence            999999999999  7877 8999999998875

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=99.32  E-value=2.1e-12  Score=123.41  Aligned_cols=189  Identities=16%  Similarity=0.154  Sum_probs=129.0

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcC-C-----CCCccCCHHHHhhCCCCCEEE
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFD-W-----PLKVFPGHQELLDSGLCDVVV   79 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~l~~~~~D~V~   79 (376)
                      +.+|+|+|+|.+|+.++..|.+.   +.+ +.+++++++   ++++++++++ +     ++.-.++++++++  ++|+|+
T Consensus         3 ~k~VlViGaG~iG~~ia~~L~~~---G~~-V~v~~R~~~---~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~--~~DvVI   73 (450)
T 1ff9_A            3 TKSVLMLGSGFVTRPTLDVLTDS---GIK-VTVACRTLE---SAKKLSAGVQHSTPISLDVNDDAALDAEVA--KHDLVI   73 (450)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTT---TCE-EEEEESSHH---HHHHTTTTCTTEEEEECCTTCHHHHHHHHT--TSSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC---cCE-EEEEECCHH---HHHHHHHhcCCceEEEeecCCHHHHHHHHc--CCcEEE
Confidence            46899999999999999998864   577 557899877   5666665543 1     1111124556676  499999


Q ss_pred             EeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcC-CC-Cc
Q 017143           80 VSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSG-SI-GQ  157 (376)
Q Consensus        80 i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g-~i-G~  157 (376)
                      .++|...|..++..+++  +|+||+++   +....+..+|.++|++ .|+.++.++..+..+....++++++++ .+ |+
T Consensus        74 n~a~~~~~~~i~~a~l~--~g~~vvd~---~~~~~~~~~l~~aA~~-aGv~~i~g~g~~pg~~~~~a~~li~q~~~~gg~  147 (450)
T 1ff9_A           74 SLIPYTFHATVIKSAIR--QKKHVVTT---SYVSPAMMELDQAAKD-AGITVMNEIGLDPGIDHLYAIKTIEEVHAAGGK  147 (450)
T ss_dssp             ECCC--CHHHHHHHHHH--HTCEEEES---SCCCHHHHHTHHHHHH-TTCEEECSCBBTTBHHHHHHHHHHHHHHHTTCE
T ss_pred             ECCccccchHHHHHHHh--CCCeEEEe---ecccHHHHHHHHHHHH-CCCeEEeCCCCcCchHHHHHHHHHHHhcccCCe
Confidence            99999999998999999  88999998   4455678899999955 599999999999999999999999875 33 56


Q ss_pred             eEEEEEeeccCCccc-ccCccccc-cccCCcccccccccHHHHHHHHhCCCCeEEEEe
Q 017143          158 VKMVAIREHRFPFLV-KVNDWNRF-NENTGGTLVEKCCHFFDLMRLFVGSNPMRVMAS  213 (376)
Q Consensus       158 i~~~~~~~~~~~~~~-~~~~w~~~-~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~  213 (376)
                      +..+.......+... ....|.+. .....|.+.    |..+.+.++.+.+..+|.+.
T Consensus       148 i~~~~~~~G~~p~~~~~~~~l~~~~~~s~~g~l~----~~~~~~~~~~~G~~~~v~~~  201 (450)
T 1ff9_A          148 IKTFLSYCGGLPAPESSDNPLGYKFSWSSRGVLL----ALRNAASFYKDGKVTNVAGP  201 (450)
T ss_dssp             EEEEEEEEEEEECGGGCCSTTSCCCSSCHHHHHH----HTTSCEEEEETTEEEEECTH
T ss_pred             eeEEEEEEcccCccccCCccccceeccChHHHHH----HhhChhheEeCCeEEEEeCc
Confidence            666554322221111 11222221 111123333    66778888885467777665

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=99.31  E-value=8.8e-12  Score=110.73  Aligned_cols=148  Identities=12%  Similarity=0.118  Sum_probs=109.7

Q ss_pred             CCCCceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHH--HHHHHH--HhcCCCCCccCCHHHHhhCCCCC
Q 017143            2 AANDTVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQ--QALKLA--NAFDWPLKVFPGHQELLDSGLCD   76 (376)
Q Consensus         2 ~~~~~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~l~~~~~D   76 (376)
                      .+++++||+|+| +|.||+.++..+.+.  ++++|++++|+++....  .+.+++  ...|++  +++|+++++..  +|
T Consensus        17 ~m~~~irV~V~Ga~GrMGr~i~~~v~~~--~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~--v~~dl~~ll~~--aD   90 (288)
T 3ijp_A           17 QGPGSMRLTVVGANGRMGRELITAIQRR--KDVELCAVLVRKGSSFVDKDASILIGSDFLGVR--ITDDPESAFSN--TE   90 (288)
T ss_dssp             ----CEEEEESSTTSHHHHHHHHHHHTC--SSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCB--CBSCHHHHTTS--CS
T ss_pred             hccCCeEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEecCCccccccchHHhhccCcCCce--eeCCHHHHhcC--CC
Confidence            445689999999 899999999998887  89999999999753110  011111  124544  89999999974  89


Q ss_pred             EEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHH--cCC
Q 017143           77 VVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVK--SGS  154 (376)
Q Consensus        77 ~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~--~g~  154 (376)
                      +|+.+|+|..+.+.+..|++  +|++|.+-... .+.++..+|.++| ++  +.  +-+...|+..+..+.++++  +..
T Consensus        91 VvIDFT~p~a~~~~~~~~l~--~Gv~vViGTTG-~~~e~~~~L~~aa-~~--~~--~~~a~N~SiGv~ll~~l~~~aa~~  162 (288)
T 3ijp_A           91 GILDFSQPQASVLYANYAAQ--KSLIHIIGTTG-FSKTEEAQIADFA-KY--TT--IVKSGNMSLGVNLLANLVKRAAKA  162 (288)
T ss_dssp             EEEECSCHHHHHHHHHHHHH--HTCEEEECCCC-CCHHHHHHHHHHH-TT--SE--EEECSCCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCHHHHHHHHHHHHH--cCCCEEEECCC-CCHHHHHHHHHHh-Cc--CC--EEEECCCcHHHHHHHHHHHHHHHh
Confidence            99999999999999999999  89999997764 5788888999999 54  33  3556677887777777663  234


Q ss_pred             CC---ceEEEEE
Q 017143          155 IG---QVKMVAI  163 (376)
Q Consensus       155 iG---~i~~~~~  163 (376)
                      ++   +|.-++.
T Consensus       163 l~~~~dieIiE~  174 (288)
T 3ijp_A          163 LDDDFDIEIYEM  174 (288)
T ss_dssp             SCTTSEEEEEEE
T ss_pred             cCCCCCEEEEEc
Confidence            55   5555555

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=99.30  E-value=6.1e-12  Score=111.45  Aligned_cols=146  Identities=11%  Similarity=0.096  Sum_probs=109.2

Q ss_pred             CCceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHH--HHHHHHH-hcCCCCCccCCHHHHhhCCCCCEEE
Q 017143            4 NDTVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQ--QALKLAN-AFDWPLKVFPGHQELLDSGLCDVVV   79 (376)
Q Consensus         4 ~~~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~l~~~~~D~V~   79 (376)
                      |+|+||+|+| +|.+|+.++..+.+.  ++++|++++|++.....  .+.+++. ..++  ..++|+++++++  +|+|+
T Consensus         5 M~mikV~V~Ga~G~MG~~i~~~l~~~--~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv--~v~~dl~~ll~~--~DVVI   78 (272)
T 4f3y_A            5 MSSMKIAIAGASGRMGRMLIEAVLAA--PDATLVGALDRTGSPQLGQDAGAFLGKQTGV--ALTDDIERVCAE--ADYLI   78 (272)
T ss_dssp             -CCEEEEESSTTSHHHHHHHHHHHHC--TTEEEEEEBCCTTCTTTTSBTTTTTTCCCSC--BCBCCHHHHHHH--CSEEE
T ss_pred             ccccEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEEecCcccccccHHHHhCCCCCc--eecCCHHHHhcC--CCEEE
Confidence            4579999999 899999999999887  89999999998754210  0111110 1144  478999999985  89999


Q ss_pred             EeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHH--cCCCC-
Q 017143           80 VSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVK--SGSIG-  156 (376)
Q Consensus        80 i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~--~g~iG-  156 (376)
                      .+|+|..+.+++..|++  +|++|.+-... .+.++..+|.++| ++  ..  +-+...|+..+..+.++++  +..++ 
T Consensus        79 DfT~p~a~~~~~~~al~--~G~~vVigTTG-~s~~~~~~L~~aa-~~--~~--vv~a~N~s~Gv~l~~~~~~~aa~~l~~  150 (272)
T 4f3y_A           79 DFTLPEGTLVHLDAALR--HDVKLVIGTTG-FSEPQKAQLRAAG-EK--IA--LVFSANMSVGVNVTMKLLEFAAKQFAQ  150 (272)
T ss_dssp             ECSCHHHHHHHHHHHHH--HTCEEEECCCC-CCHHHHHHHHHHT-TT--SE--EEECSCCCHHHHHHHHHHHHHHHHTSS
T ss_pred             EcCCHHHHHHHHHHHHH--cCCCEEEECCC-CCHHHHHHHHHHh-cc--CC--EEEECCCCHHHHHHHHHHHHHHHhcCc
Confidence            99999999999999999  99999997764 6888888999998 54  23  3556677777777776663  23455 


Q ss_pred             --ceEEEEE
Q 017143          157 --QVKMVAI  163 (376)
Q Consensus       157 --~i~~~~~  163 (376)
                        +|.-++.
T Consensus       151 ~~diei~E~  159 (272)
T 4f3y_A          151 GYDIEIIEA  159 (272)
T ss_dssp             SCEEEEEEE
T ss_pred             CCCEEEEEe
Confidence              4544554

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=99.28  E-value=1e-11  Score=108.15  Aligned_cols=130  Identities=12%  Similarity=0.073  Sum_probs=99.6

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      |+||+|+|+|.||+.++..+.+.  ++ +|++++|++...         .+|++  .|+|+++++   ++|+|+.+|+|.
T Consensus         3 MmkI~ViGaGrMG~~i~~~l~~~--~~-eLva~~d~~~~~---------~~gv~--v~~dl~~l~---~~DVvIDft~p~   65 (243)
T 3qy9_A            3 SMKILLIGYGAMNQRVARLAEEK--GH-EIVGVIENTPKA---------TTPYQ--QYQHIADVK---GADVAIDFSNPN   65 (243)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TC-EEEEEECSSCC-----------CCSC--BCSCTTTCT---TCSEEEECSCHH
T ss_pred             ceEEEEECcCHHHHHHHHHHHhC--CC-EEEEEEecCccc---------cCCCc--eeCCHHHHh---CCCEEEEeCChH
Confidence            68999999999999999999887  78 999999998761         35765  899999988   489999888877


Q ss_pred             ccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHH--cCCCCceEEEEE
Q 017143           86 THYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVK--SGSIGQVKMVAI  163 (376)
Q Consensus        86 ~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~--~g~iG~i~~~~~  163 (376)
                      ...+.+.  ++  +|+++.+..+. .+.++.++|.++| ++  ..+  -+...|+-.+..+.++++  +..+++ +.+++
T Consensus        66 a~~~~~~--l~--~g~~vVigTTG-~s~e~~~~l~~aa-~~--~~v--~~a~N~S~Gv~l~~~~~~~aa~~l~~-~dieI  134 (243)
T 3qy9_A           66 LLFPLLD--ED--FHLPLVVATTG-EKEKLLNKLDELS-QN--MPV--FFSANMSYGVHALTKILAAAVPLLDD-FDIEL  134 (243)
T ss_dssp             HHHHHHT--SC--CCCCEEECCCS-SHHHHHHHHHHHT-TT--SEE--EECSSCCHHHHHHHHHHHHHHHHTTT-SEEEE
T ss_pred             HHHHHHH--Hh--cCCceEeCCCC-CCHHHHHHHHHHH-hc--CCE--EEECCccHHHHHHHHHHHHHHHhcCC-CCEEE
Confidence            7667765  88  89999999884 7888899999999 54  343  445567777776666663  234553 34443

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=99.21  E-value=1.7e-12  Score=110.79  Aligned_cols=102  Identities=12%  Similarity=0.163  Sum_probs=77.6

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      ++.|++|||+|.+|..++..+.. ...+++++|++|.++++   ..+...  |+++..++++++++++.  |+|+||+|.
T Consensus        84 ~~~rV~IIGAG~~G~~La~~~~~-~~~g~~iVg~~D~dp~k---~g~~i~--gv~V~~~~dl~eli~~~--D~ViIAvPs  155 (215)
T 2vt3_A           84 EMTDVILIGVGNLGTAFLHYNFT-KNNNTKISMAFDINESK---IGTEVG--GVPVYNLDDLEQHVKDE--SVAILTVPA  155 (215)
T ss_dssp             ---CEEEECCSHHHHHHHHCC-------CCEEEEEESCTTT---TTCEET--TEEEEEGGGHHHHCSSC--CEEEECSCH
T ss_pred             CCCEEEEEccCHHHHHHHHHHhc-ccCCcEEEEEEeCCHHH---HHhHhc--CCeeechhhHHHHHHhC--CEEEEecCc
Confidence            35799999999999998884222 12689999999999983   322222  44444578899999874  999999999


Q ss_pred             CccHHHHHHHHcCCCCCe-EEEecCCCCCHHHH
Q 017143           85 MTHYQILMDIINHPKPHH-VLVEKPLCTTVADC  116 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~~-Vl~EKP~a~~~~e~  116 (376)
                      ..|.+++..+++  +|++ |++|||+.+++.++
T Consensus       156 ~~~~ei~~~l~~--aGi~~Ilnf~P~~l~vp~~  186 (215)
T 2vt3_A          156 VAAQSITDRLVA--LGIKGILNFTPARLNVPEH  186 (215)
T ss_dssp             HHHHHHHHHHHH--TTCCEEEECSSCCCCCCTT
T ss_pred             hhHHHHHHHHHH--cCCCEEEEcCceeccCCCc
Confidence            999999999999  8888 99999999988653

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=99.20  E-value=1.6e-10  Score=102.60  Aligned_cols=101  Identities=20%  Similarity=0.330  Sum_probs=79.9

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      +++||+|||+|.+|..++..+.+.   +.+ +.++|++++   +++++++++|+.  .++++++++++  .|+|++++|+
T Consensus         2 ~~m~i~iiG~G~mG~~~a~~l~~~---g~~-v~~~~~~~~---~~~~~~~~~g~~--~~~~~~~~~~~--~D~Vi~~v~~   70 (259)
T 2ahr_A            2 NAMKIGIIGVGKMASAIIKGLKQT---PHE-LIISGSSLE---RSKEIAEQLALP--YAMSHQDLIDQ--VDLVILGIKP   70 (259)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTTS---SCE-EEEECSSHH---HHHHHHHHHTCC--BCSSHHHHHHT--CSEEEECSCG
T ss_pred             CccEEEEECCCHHHHHHHHHHHhC---CCe-EEEECCCHH---HHHHHHHHcCCE--eeCCHHHHHhc--CCEEEEEeCc
Confidence            357999999999999999888775   444 578999987   566677777865  78899999985  8999999998


Q ss_pred             CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHH
Q 017143           85 MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVV  120 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~  120 (376)
                      ..|.+++. .++  .|+ ++|++|.+.+.++..++.
T Consensus        71 ~~~~~v~~-~l~--~~~-~vv~~~~~~~~~~l~~~~  102 (259)
T 2ahr_A           71 QLFETVLK-PLH--FKQ-PIISMAAGISLQRLATFV  102 (259)
T ss_dssp             GGHHHHHT-TSC--CCS-CEEECCTTCCHHHHHHHH
T ss_pred             HhHHHHHH-Hhc--cCC-EEEEeCCCCCHHHHHHhc
Confidence            77766554 456  566 999999999987655543

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=99.15  E-value=1.8e-09  Score=94.03  Aligned_cols=128  Identities=15%  Similarity=0.165  Sum_probs=99.6

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      +||+|+|+ |.||+.++..+...  ++++|++++|++                     +++++++.. ++|+|+-+|+|.
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~--~~~elva~~d~~---------------------~dl~~~~~~-~~DvvIDfT~p~   56 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAA--DDLTLSAELDAG---------------------DPLSLLTDG-NTEVVIDFTHPD   56 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHC--TTCEEEEEECTT---------------------CCTHHHHHT-TCCEEEECSCTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEccC---------------------CCHHHHhcc-CCcEEEEccChH
Confidence            58999996 99999999888776  799999999863                     346677763 489999999999


Q ss_pred             ccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHH--cCCCCceEEEEE
Q 017143           86 THYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVK--SGSIGQVKMVAI  163 (376)
Q Consensus        86 ~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~--~g~iG~i~~~~~  163 (376)
                      .+.+++..|++  +|+|+.+.++. .+.++..+|.++|++.+++.++...  .|+..+..+.++++  ...+.+|.-++.
T Consensus        57 a~~~~~~~a~~--~g~~~VigTTG-~~~e~~~~l~~aa~~~~~~~vv~a~--N~siGv~ll~~l~~~aa~~~~dieIiE~  131 (245)
T 1p9l_A           57 VVMGNLEFLID--NGIHAVVGTTG-FTAERFQQVESWLVAKPNTSVLIAP--NFAIGAVLSMHFAKQAARFFDSAEVIEL  131 (245)
T ss_dssp             THHHHHHHHHH--TTCEEEECCCC-CCHHHHHHHHHHHHTSTTCEEEECS--CCCHHHHHHHHHHHHHGGGCSEEEEEEE
T ss_pred             HHHHHHHHHHH--cCCCEEEcCCC-CCHHHHHHHHHHHHhCCCCCEEEEC--CccHHHHHHHHHHHHHHhhcCCEEEEEC
Confidence            99999999999  99999999994 7888899999999433366665554  45665655666663  334556655655

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=99.09  E-value=2.2e-10  Score=104.80  Aligned_cols=96  Identities=22%  Similarity=0.324  Sum_probs=73.8

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCC--ChhhHHHHHHHHH---hcC-CC----------------CCcc
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADP--HLQSRQQALKLAN---AFD-WP----------------LKVF   63 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~--~~~~~~~~~~~~~---~~~-~~----------------~~~~   63 (376)
                      ++||||+|+|.+|+.+++.+..+  ++++|++|.|+  +++   ....+.+   -+| ++                +.++
T Consensus         3 ~ikVgI~G~G~iGr~~~R~l~~~--~~vevvaI~d~~~~~~---~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~   77 (335)
T 1u8f_O            3 KVKVGVNGFGRIGRLVTRAAFNS--GKVDIVAINDPFIDLN---YMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIF   77 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH--CSSEEEEEECSSSCHH---HHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEE
T ss_pred             ceEEEEEccCHHHHHHHHHHHcC--CCcEEEEecCCCCCHH---HHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEE
Confidence            58999999999999999999888  89999999995  555   3333332   111 00                0112


Q ss_pred             --CCHHHH-hhCCCCCEEEEeCCCCccHHHHHHHHcCCCC-CeEEEecC
Q 017143           64 --PGHQEL-LDSGLCDVVVVSTPNMTHYQILMDIINHPKP-HHVLVEKP  108 (376)
Q Consensus        64 --~~~~~~-l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g-~~Vl~EKP  108 (376)
                        .+.+++ ..+.++|+|+.|||...|.+.+.++++  +| |.|++++|
T Consensus        78 ~~~d~~~l~~~~~~vDvV~eatg~~~~~e~a~~~l~--aGak~V~iSap  124 (335)
T 1u8f_O           78 QERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQ--GGAKRVIISAP  124 (335)
T ss_dssp             CCSSGGGCCTTTTTCCEEEECSSSCCSHHHHGGGGG--GTCSEEEESSC
T ss_pred             ecCCHHHCccccCCCCEEEECCCchhhHHHHHHHHh--CCCeEEEeccC
Confidence              256666 333469999999999999999999999  77 99999999

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=99.08  E-value=3.5e-10  Score=103.70  Aligned_cols=95  Identities=16%  Similarity=0.189  Sum_probs=75.7

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC----------------CCccCCHHHH
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP----------------LKVFPGHQEL   69 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~   69 (376)
                      |+||||+|+|.+|+.+++.+.++  +++++++++|+++..   ....+.+.+..                ..+..+.+++
T Consensus         1 mikVgIiGaG~iG~~l~r~L~~~--~~~elvav~d~~~~~---~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~   75 (337)
T 1cf2_P            1 MKAVAINGYGTVGKRVADAIAQQ--DDMKVIGVSKTRPDF---EARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDM   75 (337)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHTS--SSEEEEEEEESSCSH---HHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHH
T ss_pred             CeEEEEEeECHHHHHHHHHHHcC--CCcEEEEEEcCChhH---HHHhcCCcchhhccccccceeeecCCceEEcCCHHHH
Confidence            48999999999999999999888  899999999988653   22333222111                1122467777


Q ss_pred             hhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCC
Q 017143           70 LDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPL  109 (376)
Q Consensus        70 l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~  109 (376)
                      +..  +|+|+.|||+..|.+.+.++++  +|++|++++|-
T Consensus        76 ~~~--vDvV~~atp~~~~~~~a~~~l~--aG~~VId~sp~  111 (337)
T 1cf2_P           76 LDE--ADIVIDCTPEGIGAKNLKMYKE--KGIKAIFQGGE  111 (337)
T ss_dssp             HHT--CSEEEECCSTTHHHHHHHHHHH--HTCCEEECTTS
T ss_pred             hcC--CCEEEECCCchhhHHHHHHHHH--cCCEEEEecCC
Confidence            764  9999999999999999999999  88999999997

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=99.07  E-value=3.9e-10  Score=106.44  Aligned_cols=148  Identities=14%  Similarity=0.139  Sum_probs=107.9

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCc-EEEEEeCCChhhHHHHHHHHHhcC------CC-----CCccCCHHHHhhCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGV-SVVCIADPHLQSRQQALKLANAFD------WP-----LKVFPGHQELLDSGL   74 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~-~~~~v~d~~~~~~~~~~~~~~~~~------~~-----~~~~~~~~~~l~~~~   74 (376)
                      .||+|+|+|.+|+.++..+.+.  +++ ..+.+++++.+   ++++++++++      +.     +.-.+++++++++.+
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~--g~~~~~V~v~~r~~~---~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~   76 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMN--REVFSHITLASRTLS---KCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVK   76 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTC--TTTCCEEEEEESCHH---HHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCCceEEEEEECCHH---HHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhC
Confidence            5899999999999999999887  555 45668899988   4555554432      21     112345778887756


Q ss_pred             CCEEEEeCCCCccHHHHHHHHcCCCCCeEE----EecCCC--CCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHH
Q 017143           75 CDVVVVSTPNMTHYQILMDIINHPKPHHVL----VEKPLC--TTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQ  148 (376)
Q Consensus        75 ~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl----~EKP~a--~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~  148 (376)
                      +|+|+.++++..|.+++..|++  +|+|++    +++|..  .......++.+.+++ .|+.++.+..  +.|....+..
T Consensus        77 ~DvVin~ag~~~~~~v~~a~l~--~g~~vvD~a~~~~~~~~~~~~~~~~~l~~~a~~-aG~~~i~g~G--~~PG~~~l~a  151 (405)
T 4ina_A           77 PQIVLNIALPYQDLTIMEACLR--TGVPYLDTANYEHPDLAKFEYKEQWAFHDRYKE-KGVMALLGSG--FDPGVTNVFC  151 (405)
T ss_dssp             CSEEEECSCGGGHHHHHHHHHH--HTCCEEESSCCBCTTCSCBCSHHHHTTHHHHHH-HTCEEEECCB--TTTBHHHHHH
T ss_pred             CCEEEECCCcccChHHHHHHHH--hCCCEEEecCCCCcccchhhhHHHHHHHHHHHH-hCCEEEEcCC--CCccHHHHHH
Confidence            8999999999999999999999  899999    666632  124556788888844 5888888876  6776665544


Q ss_pred             HHHcC-CCCceEEEEEe
Q 017143          149 IVKSG-SIGQVKMVAIR  164 (376)
Q Consensus       149 ~i~~g-~iG~i~~~~~~  164 (376)
                      ....+ .++++..+.+.
T Consensus       152 ~~~~~~~~~~i~~i~i~  168 (405)
T 4ina_A          152 AYAQKHYFDEIHEIDIL  168 (405)
T ss_dssp             HHHHHHTCSEEEEEEEE
T ss_pred             HHHHHhccCcccEEEEE
Confidence            43333 58888888763

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=99.02  E-value=4.6e-10  Score=102.55  Aligned_cols=100  Identities=22%  Similarity=0.244  Sum_probs=72.9

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCC--ChhhHHHHHHHHHhcCCC-------------------CCccC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADP--HLQSRQQALKLANAFDWP-------------------LKVFP   64 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~--~~~~~~~~~~~~~~~~~~-------------------~~~~~   64 (376)
                      ++||||+|+|.+|+.+++.+...  ++++|++|.|+  +.+......+....+|.-                   +.++.
T Consensus         3 ~ikVgI~G~GrIGr~l~R~l~~~--p~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v~~   80 (337)
T 3e5r_O            3 KIKIGINGFGRIGRLVARVALQS--EDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFG   80 (337)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTC--SSEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEEEC
T ss_pred             ceEEEEECcCHHHHHHHHHHhCC--CCeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEEEe
Confidence            58999999999999999999887  89999999995  444222222113333310                   01132


Q ss_pred             --CHHHHh-hCCCCCEEEEeCCCCccHHHHHHHHcCCCCC-eEEEecCC
Q 017143           65 --GHQELL-DSGLCDVVVVSTPNMTHYQILMDIINHPKPH-HVLVEKPL  109 (376)
Q Consensus        65 --~~~~~l-~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~-~Vl~EKP~  109 (376)
                        +.+++. .+.++|+|+.|||...|.+.+.++++  +|. +|++++|.
T Consensus        81 ~~dp~~l~w~~~~vDvV~eaTg~~~~~e~a~~~l~--aGak~VVIs~pa  127 (337)
T 3e5r_O           81 IRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLK--GGAKKVVISAPS  127 (337)
T ss_dssp             CSCGGGCCHHHHTCSEEEECSSSCCSHHHHTHHHH--TTCSEEEESSCC
T ss_pred             cCChHHccccccCCCEEEECCCchhhHHHHHHHHH--cCCCEEEEecCC
Confidence              555552 22359999999999999999999999  665 69999996

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=98.96  E-value=2.8e-09  Score=97.78  Aligned_cols=90  Identities=17%  Similarity=0.211  Sum_probs=71.7

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC-----------------CHHH
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP-----------------GHQE   68 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~   68 (376)
                      |+||||+|+|.+|+.|++.+.++  ++++|++++|++++   .....+.+++++  .|.                 +.++
T Consensus         1 ~ikVgIiGaG~iG~~~~r~L~~~--p~~elvav~d~~~~---~~~~~a~~~g~~--~~~~~~~~~~~~~~~v~v~~~~e~   73 (340)
T 1b7g_O            1 MVNVAVNGYGTIGKRVADAIIKQ--PDMKLVGVAKTSPN---YEAFIAHRRGIR--IYVPQQSIKKFEESGIPVAGTVED   73 (340)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTC--TTEEEEEEECSSCS---HHHHHHHHTTCC--EECCGGGHHHHHTTTCCCCCCHHH
T ss_pred             CeEEEEEecCHHHHHHHHHHHcC--CCCEEEEEEcCChH---HHHHHHHhcCcc--eecCcCHHHHhcccccccccCHhH
Confidence            48999999999999999999888  89999999999876   344555566665  443                 3334


Q ss_pred             HhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEe
Q 017143           69 LLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVE  106 (376)
Q Consensus        69 ~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~E  106 (376)
                      +++  ++|+|+.|||+..+.+.+..+++  +|..++.-
T Consensus        74 l~~--~vDvV~~aTp~~~s~~~a~~~~~--aG~kvV~~  107 (340)
T 1b7g_O           74 LIK--TSDIVVDTTPNGVGAQYKPIYLQ--LQRNAIFQ  107 (340)
T ss_dssp             HHH--HCSEEEECCSTTHHHHHHHHHHH--TTCEEEEC
T ss_pred             hhc--CCCEEEECCCCchhHHHHHHHHH--cCCeEEEe
Confidence            443  48999999999999999999999  77766553

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=98.95  E-value=1.6e-09  Score=101.02  Aligned_cols=133  Identities=16%  Similarity=0.248  Sum_probs=93.0

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      +++||+|+|+|.+|+..+..|.+.    .+++ ++|++.++++++++.+....+++.-.+++++++++  .|+|+.++|+
T Consensus        15 ~~mkilvlGaG~vG~~~~~~L~~~----~~v~-~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~--~DvVi~~~p~   87 (365)
T 3abi_A           15 RHMKVLILGAGNIGRAIAWDLKDE----FDVY-IGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKE--FELVIGALPG   87 (365)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTTT----SEEE-EEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTT--CSEEEECCCG
T ss_pred             CccEEEEECCCHHHHHHHHHHhcC----CCeE-EEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhC--CCEEEEecCC
Confidence            468999999999999888777553    4543 67888886555444333333332223455666665  8999999999


Q ss_pred             CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHH--HHHHHHHc
Q 017143           85 MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVA--KLIQIVKS  152 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~--~~k~~i~~  152 (376)
                      ..|..++..|++  +|+|++-   ++...++.++|.+.|++ +|+.++.+.  =++|...  .++.+++.
T Consensus        88 ~~~~~v~~~~~~--~g~~yvD---~s~~~~~~~~l~~~a~~-~g~~~i~~~--G~~PG~~~~~a~~~~~~  149 (365)
T 3abi_A           88 FLGFKSIKAAIK--SKVDMVD---VSFMPENPLELRDEAEK-AQVTIVFDA--GFAPGLSNILMGRIFQE  149 (365)
T ss_dssp             GGHHHHHHHHHH--HTCEEEE---CCCCSSCGGGGHHHHHH-TTCEEECCC--BTTTBHHHHHHHHHHHH
T ss_pred             cccchHHHHHHh--cCcceEe---eeccchhhhhhhhhhcc-CCceeeecC--CCCCchHHHHHHHHHHh
Confidence            999999999999  8999875   44555667778888844 587777654  4666443  45555554

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=98.95  E-value=1.7e-08  Score=90.70  Aligned_cols=113  Identities=19%  Similarity=0.211  Sum_probs=89.6

Q ss_pred             CceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143            5 DTVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         5 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      ++.+++|+|+ |.+|+.|+..+.+.   ++++++.+++...    .+   +-+|++  +|+|++++.++.++|+++|++|
T Consensus        12 ~~~~v~V~Gasg~~G~~~~~~l~~~---g~~~V~~VnP~~~----g~---~i~G~~--vy~sl~el~~~~~~Dv~ii~vp   79 (294)
T 2yv1_A           12 ENTKAIVQGITGRQGSFHTKKMLEC---GTKIVGGVTPGKG----GQ---NVHGVP--VFDTVKEAVKETDANASVIFVP   79 (294)
T ss_dssp             TTCCEEEETTTSHHHHHHHHHHHHT---TCCEEEEECTTCT----TC---EETTEE--EESSHHHHHHHHCCCEEEECCC
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHhC---CCeEEEEeCCCCC----Cc---eECCEe--eeCCHHHHhhcCCCCEEEEccC
Confidence            4688999998 99999999988775   6777766665431    01   125765  9999999998434999999999


Q ss_pred             CCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEE
Q 017143           84 NMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQ  132 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~  132 (376)
                      +..|.+.+.+|++  +|++.++..+-..+.++.++|.++|++ .++.+.
T Consensus        80 ~~~~~~~v~ea~~--~Gi~~vVi~t~G~~~~~~~~l~~~A~~-~gi~vi  125 (294)
T 2yv1_A           80 APFAKDAVFEAID--AGIELIVVITEHIPVHDTMEFVNYAED-VGVKII  125 (294)
T ss_dssp             HHHHHHHHHHHHH--TTCSEEEECCSCCCHHHHHHHHHHHHH-HTCEEE
T ss_pred             HHHHHHHHHHHHH--CCCCEEEEECCCCCHHHHHHHHHHHHH-cCCEEE
Confidence            9999999999999  899976667767788899999999955 477543

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=98.90  E-value=5.4e-08  Score=87.12  Aligned_cols=114  Identities=14%  Similarity=0.182  Sum_probs=89.9

Q ss_pred             CCceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeC
Q 017143            4 NDTVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         4 ~~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t   82 (376)
                      .+..||+|+|+ |.+|+.|+..+.+.   ++++++.+++....    +   +.+|++  +|+|++++.+..++|+++|++
T Consensus         5 ~~~~~VaVvGasG~~G~~~~~~l~~~---g~~~v~~VnP~~~g----~---~i~G~~--vy~sl~el~~~~~~Dv~Ii~v   72 (288)
T 1oi7_A            5 NRETRVLVQGITGREGQFHTKQMLTY---GTKIVAGVTPGKGG----M---EVLGVP--VYDTVKEAVAHHEVDASIIFV   72 (288)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHH---TCEEEEEECTTCTT----C---EETTEE--EESSHHHHHHHSCCSEEEECC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHHc---CCeEEEEECCCCCC----c---eECCEE--eeCCHHHHhhcCCCCEEEEec
Confidence            35689999998 99999999988776   68887777765410    0   135765  999999999844599999999


Q ss_pred             CCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEE
Q 017143           83 PNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQ  132 (376)
Q Consensus        83 ~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~  132 (376)
                      |+..+.+.+.+|++  +|.+.++.-.-..+.++.++|.+.+++ .++.+.
T Consensus        73 p~~~~~~~~~ea~~--~Gi~~vVi~t~G~~~~~~~~l~~~a~~-~gi~vi  119 (288)
T 1oi7_A           73 PAPAAADAALEAAH--AGIPLIVLITEGIPTLDMVRAVEEIKA-LGSRLI  119 (288)
T ss_dssp             CHHHHHHHHHHHHH--TTCSEEEECCSCCCHHHHHHHHHHHHH-HTCEEE
T ss_pred             CHHHHHHHHHHHHH--CCCCEEEEECCCCCHHHHHHHHHHHHH-cCCEEE
Confidence            99999999999999  889855555556678888999999955 477433

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=98.81  E-value=1.2e-08  Score=93.49  Aligned_cols=96  Identities=16%  Similarity=0.129  Sum_probs=72.7

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC------------------CCccCCHH
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP------------------LKVFPGHQ   67 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~   67 (376)
                      |+||||+|+|.+|+.+++.+...  ++++|++|+|.+++.   ...+.+..|..                  ..+-.+.+
T Consensus         2 mikVgI~G~G~IGr~v~r~l~~~--~~~evvaV~d~~~~~---~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~   76 (343)
T 2yyy_A            2 PAKVLINGYGSIGKRVADAVSMQ--DDMEVIGVTKTKPDF---EARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTIL   76 (343)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHS--SSEEEEEEEESSCSH---HHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGG
T ss_pred             ceEEEEECCCHHHHHHHHHHHhC--CCceEEEEecCCHHH---HHHHHHhcCCccccccCCCceeecccCCeEEECCchH
Confidence            48999999999999999999877  889999999987653   33333222211                  01122344


Q ss_pred             HHhhCCCCCEEEEeCCCCccHHHHH-HHHcCCCCCeEEEecCCC
Q 017143           68 ELLDSGLCDVVVVSTPNMTHYQILM-DIINHPKPHHVLVEKPLC  110 (376)
Q Consensus        68 ~~l~~~~~D~V~i~t~~~~h~~~~~-~al~~~~g~~Vl~EKP~a  110 (376)
                      +++.  ++|+|+.|||...|.+.+. .+++  +|++|++.+|..
T Consensus        77 ~~~~--~vDiV~eatg~~~s~~~a~~~~l~--aG~~VI~sap~~  116 (343)
T 2yyy_A           77 DIIE--DADIVVDGAPKKIGKQNLENIYKP--HKVKAILQGGEK  116 (343)
T ss_dssp             GTGG--GCSEEEECCCTTHHHHHHHHTTTT--TTCEEEECTTSC
T ss_pred             Hhcc--CCCEEEECCCccccHHHHHHHHHH--CCCEEEECCCcc
Confidence            4444  4999999999999999996 8999  889999999963

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=98.79  E-value=2.2e-07  Score=83.47  Aligned_cols=112  Identities=19%  Similarity=0.213  Sum_probs=85.7

Q ss_pred             CceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCC-CCCEEEEeC
Q 017143            5 DTVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSG-LCDVVVVST   82 (376)
Q Consensus         5 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~D~V~i~t   82 (376)
                      ++.+++|+|+ |.+|+.|+..+.+.   ++++++.+++...    .+   +-+|++  +|+|++++.+.. ++|+++|++
T Consensus        12 ~~~~vvV~Gasg~~G~~~~~~l~~~---g~~~v~~VnP~~~----g~---~i~G~~--vy~sl~el~~~~~~~DvaIi~v   79 (297)
T 2yv2_A           12 SETRVLVQGITGREGSFHAKAMLEY---GTKVVAGVTPGKG----GS---EVHGVP--VYDSVKEALAEHPEINTSIVFV   79 (297)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHH---TCEEEEEECTTCT----TC---EETTEE--EESSHHHHHHHCTTCCEEEECC
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHhC---CCcEEEEeCCCCC----Cc---eECCEe--eeCCHHHHhhcCCCCCEEEEec
Confidence            4688999997 89999999988876   6777766665431    00   125765  999999999743 399999999


Q ss_pred             CCCccHHHHHHHHcCCCCCe-EEEecCCCCCHHHHHHHHHHHHhCCCeEEE
Q 017143           83 PNMTHYQILMDIINHPKPHH-VLVEKPLCTTVADCKKVVDAARKRPDILVQ  132 (376)
Q Consensus        83 ~~~~h~~~~~~al~~~~g~~-Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~  132 (376)
                      |+..+.+.+.+|++  +|++ ++| -.-..+.++.++|.+++++ .++.+.
T Consensus        80 p~~~~~~~v~ea~~--~Gi~~vVi-~t~G~~~~~~~~l~~~A~~-~gi~vi  126 (297)
T 2yv2_A           80 PAPFAPDAVYEAVD--AGIRLVVV-ITEGIPVHDTMRFVNYARQ-KGATII  126 (297)
T ss_dssp             CGGGHHHHHHHHHH--TTCSEEEE-CCCCCCHHHHHHHHHHHHH-HTCEEE
T ss_pred             CHHHHHHHHHHHHH--CCCCEEEE-ECCCCCHHHHHHHHHHHHH-cCCEEE
Confidence            99999999999999  8888 444 2324467888999999955 477543

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.78  E-value=3.9e-08  Score=94.09  Aligned_cols=145  Identities=15%  Similarity=0.116  Sum_probs=102.9

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC--CccC---CHHHHhhCCCCCEEE
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL--KVFP---GHQELLDSGLCDVVV   79 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~l~~~~~D~V~   79 (376)
                      ++.||.|+|+|.+|+.++..|.+.  ++++ +.|++|+++   ++++++++.++..  --+.   ++++++..  +|+|+
T Consensus        22 ~~k~VlIiGAGgiG~aia~~L~~~--~g~~-V~v~~R~~~---ka~~la~~~~~~~~~~D~~d~~~l~~~l~~--~DvVI   93 (467)
T 2axq_A           22 MGKNVLLLGSGFVAQPVIDTLAAN--DDIN-VTVACRTLA---NAQALAKPSGSKAISLDVTDDSALDKVLAD--NDVVI   93 (467)
T ss_dssp             -CEEEEEECCSTTHHHHHHHHHTS--TTEE-EEEEESSHH---HHHHHHGGGTCEEEECCTTCHHHHHHHHHT--SSEEE
T ss_pred             CCCEEEEECChHHHHHHHHHHHhC--CCCe-EEEEECCHH---HHHHHHHhcCCcEEEEecCCHHHHHHHHcC--CCEEE
Confidence            356899999999999999999886  5777 557899887   5666665544321  0122   45566664  89999


Q ss_pred             EeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcC-CC-Cc
Q 017143           80 VSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSG-SI-GQ  157 (376)
Q Consensus        80 i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g-~i-G~  157 (376)
                      .++|...|..++..|++  +|+|++..   +....+..+|.+.|++ .|+.++.++...-......++++++.+ .+ |+
T Consensus        94 n~tp~~~~~~v~~a~l~--~g~~vvd~---~~~~p~~~~Ll~~Ak~-aGv~~i~g~G~~PG~~~~~a~~li~q~~~~g~~  167 (467)
T 2axq_A           94 SLIPYTFHPNVVKSAIR--TKTDVVTS---SYISPALRELEPEIVK-AGITVMNEIGLDPGIDHLYAVKTIDEVHRAGGK  167 (467)
T ss_dssp             ECSCGGGHHHHHHHHHH--HTCEEEEC---SCCCHHHHHHHHHHHH-HTCEEECSCBBTTBHHHHHHHHHHHHHHHTTCE
T ss_pred             ECCchhhhHHHHHHHHh--cCCEEEEe---ecCCHHHHHHHHHHHH-cCCEEEecCCcCccchHHHHHHHHHHHHhccCc
Confidence            99999999889999999  88999973   3334456888888855 488888887664444455566666543 23 56


Q ss_pred             eEEEEE
Q 017143          158 VKMVAI  163 (376)
Q Consensus       158 i~~~~~  163 (376)
                      +..+..
T Consensus       168 ~~s~~~  173 (467)
T 2axq_A          168 LKSFLS  173 (467)
T ss_dssp             EEEEEE
T ss_pred             ceEEEE
Confidence            666554

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=98.78  E-value=8.8e-09  Score=81.74  Aligned_cols=104  Identities=16%  Similarity=0.232  Sum_probs=80.4

Q ss_pred             CceeEEEEeC----ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEE
Q 017143            5 DTVKYGIIGM----GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         5 ~~~~v~iiG~----G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      ++.+|+|||+    |.+|..++..+.+.   +++++ .++++.+      +   -.|.+  .|.|++++.+.  +|+|+|
T Consensus        13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~---G~~V~-~vnp~~~------~---i~G~~--~~~s~~el~~~--vDlvii   75 (138)
T 1y81_A           13 EFRKIALVGASKNPAKYGNIILKDLLSK---GFEVL-PVNPNYD------E---IEGLK--CYRSVRELPKD--VDVIVF   75 (138)
T ss_dssp             -CCEEEEETCCSCTTSHHHHHHHHHHHT---TCEEE-EECTTCS------E---ETTEE--CBSSGGGSCTT--CCEEEE
T ss_pred             CCCeEEEEeecCCCCCHHHHHHHHHHHC---CCEEE-EeCCCCC------e---ECCee--ecCCHHHhCCC--CCEEEE
Confidence            4689999999    99999999988775   77744 3444432      1   14755  99999999875  999999


Q ss_pred             eCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEE
Q 017143           81 STPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQ  132 (376)
Q Consensus        81 ~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~  132 (376)
                      ++|+..+.+++.++++  +|...++..+.+.    .++|.+.+++. |+.+.
T Consensus        76 ~vp~~~v~~v~~~~~~--~g~~~i~~~~~~~----~~~l~~~a~~~-Gi~~i  120 (138)
T 1y81_A           76 VVPPKVGLQVAKEAVE--AGFKKLWFQPGAE----SEEIRRFLEKA-GVEYS  120 (138)
T ss_dssp             CSCHHHHHHHHHHHHH--TTCCEEEECTTSC----CHHHHHHHHHH-TCEEE
T ss_pred             EeCHHHHHHHHHHHHH--cCCCEEEEcCccH----HHHHHHHHHHC-CCEEE
Confidence            9999999999999999  7777788777553    67888888554 77654

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=98.73  E-value=1.5e-08  Score=92.41  Aligned_cols=100  Identities=17%  Similarity=0.219  Sum_probs=78.4

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcC---CCCCccCCHHHHhhCCCCCEEEEe
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFD---WPLKVFPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~D~V~i~   81 (376)
                      +..+++|||+|.+|+.|+.++...  .+++.+.|++++++   ++++++++++   +++. ++++++++ +  .|+|++|
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~--~~~~~V~v~~r~~~---~a~~la~~~~~~~~~~~-~~~~~e~v-~--aDvVi~a  194 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRV--FDIGEVKAYDVREK---AAKKFVSYCEDRGISAS-VQPAEEAS-R--CDVLVTT  194 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHH--SCCCEEEEECSSHH---HHHHHHHHHHHTTCCEE-ECCHHHHT-S--SSEEEEC
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHh--CCccEEEEECCCHH---HHHHHHHHHHhcCceEE-ECCHHHHh-C--CCEEEEe
Confidence            357999999999999999999887  46788889999998   5666666543   4445 89999999 5  8999999


Q ss_pred             CCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHH
Q 017143           82 TPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADC  116 (376)
Q Consensus        82 t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~  116 (376)
                      ||...+. +-...++  .|+||+++++......|+
T Consensus       195 Tp~~~pv-~~~~~l~--~G~~V~~ig~~~p~~~el  226 (322)
T 1omo_A          195 TPSRKPV-VKAEWVE--EGTHINAIGADGPGKQEL  226 (322)
T ss_dssp             CCCSSCC-BCGGGCC--TTCEEEECSCCSTTCCCB
T ss_pred             eCCCCce-ecHHHcC--CCeEEEECCCCCCCcccc
Confidence            9976432 1135788  899999998877765554

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.68  E-value=3e-08  Score=85.49  Aligned_cols=94  Identities=15%  Similarity=0.165  Sum_probs=68.2

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      +++||+|||+|.+|..++..+.+.   +.+++.+++++++   +++++++++|+.  .+.+..+.+++  .|+|++++|+
T Consensus        22 ~mmkI~IIG~G~mG~~la~~l~~~---g~~V~~v~~r~~~---~~~~l~~~~g~~--~~~~~~~~~~~--aDvVilavp~   91 (220)
T 4huj_A           22 SMTTYAIIGAGAIGSALAERFTAA---QIPAIIANSRGPA---SLSSVTDRFGAS--VKAVELKDALQ--ADVVILAVPY   91 (220)
T ss_dssp             GSCCEEEEECHHHHHHHHHHHHHT---TCCEEEECTTCGG---GGHHHHHHHTTT--EEECCHHHHTT--SSEEEEESCG
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhC---CCEEEEEECCCHH---HHHHHHHHhCCC--cccChHHHHhc--CCEEEEeCCh
Confidence            468999999999999999988875   6788877999998   566677777865  44444455654  8999999999


Q ss_pred             CccHHHHHHHHcCCCCCe-EEEecCC
Q 017143           85 MTHYQILMDIINHPKPHH-VLVEKPL  109 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~~-Vl~EKP~  109 (376)
                      ..+.+++.+... ..++. |-+-+|+
T Consensus        92 ~~~~~v~~~l~~-~~~~ivi~~~~g~  116 (220)
T 4huj_A           92 DSIADIVTQVSD-WGGQIVVDASNAI  116 (220)
T ss_dssp             GGHHHHHTTCSC-CTTCEEEECCCCB
T ss_pred             HHHHHHHHHhhc-cCCCEEEEcCCCC
Confidence            888877765422 12332 3345555

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=98.67  E-value=6.6e-07  Score=80.64  Aligned_cols=115  Identities=17%  Similarity=0.150  Sum_probs=91.0

Q ss_pred             ceeEEEE-eC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143            6 TVKYGII-GM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         6 ~~~v~ii-G~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      +-+++|| |+ |..|+.|+..+.+.   ++++++.+++....       .+-+|++  +|.+++++.+...+|+++|++|
T Consensus        13 ~~siaVV~Gasg~~G~~~~~~l~~~---G~~~v~~VnP~~~g-------~~i~G~~--vy~sl~el~~~~~vD~avI~vP   80 (305)
T 2fp4_A           13 KNTKVICQGFTGKQGTFHSQQALEY---GTNLVGGTTPGKGG-------KTHLGLP--VFNTVKEAKEQTGATASVIYVP   80 (305)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHH---TCEEEEEECTTCTT-------CEETTEE--EESSHHHHHHHHCCCEEEECCC
T ss_pred             CCcEEEEECCCCCHHHHHHHHHHHC---CCcEEEEeCCCcCc-------ceECCee--eechHHHhhhcCCCCEEEEecC
Confidence            4568888 98 99999999988876   68877666665310       0135765  9999999998434999999999


Q ss_pred             CCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCC-CeEEEEeec
Q 017143           84 NMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRP-DILVQVGLE  136 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~-~~~~~v~~~  136 (376)
                      +..+.+.+.+|++  +|.+.++......+.++.+++.+.+ +++ |+.+ +|.+
T Consensus        81 ~~~~~~~~~e~i~--~Gi~~iv~~t~G~~~~~~~~l~~~a-~~~~gi~l-iGPn  130 (305)
T 2fp4_A           81 PPFAAAAINEAID--AEVPLVVCITEGIPQQDMVRVKHRL-LRQGKTRL-IGPN  130 (305)
T ss_dssp             HHHHHHHHHHHHH--TTCSEEEECCCCCCHHHHHHHHHHH-TTCSSCEE-ECSS
T ss_pred             HHHHHHHHHHHHH--CCCCEEEEECCCCChHHHHHHHHHH-HhcCCcEE-EeCC
Confidence            9999999999999  8888877777778888889999999 666 7664 5433

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=98.67  E-value=2e-08  Score=92.50  Aligned_cols=102  Identities=16%  Similarity=0.245  Sum_probs=79.2

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc----CCCCCccCCHHHHhhCCCCCEEEE
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF----DWPLKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      +..+++|||+|.+|+.|+.++...  .+++-+.|++++++   +++++++++    |+++..++++++++.+  .|+|++
T Consensus       128 ~~~~v~iIGaG~~a~~~a~al~~~--~~~~~V~V~~r~~~---~a~~la~~~~~~~g~~~~~~~~~~eav~~--aDiVi~  200 (350)
T 1x7d_A          128 NARKMALIGNGAQSEFQALAFHKH--LGIEEIVAYDTDPL---ATAKLIANLKEYSGLTIRRASSVAEAVKG--VDIITT  200 (350)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHH--SCCCEEEEECSSHH---HHHHHHHHHTTCTTCEEEECSSHHHHHTT--CSEEEE
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHh--CCCcEEEEEcCCHH---HHHHHHHHHHhccCceEEEeCCHHHHHhc--CCEEEE
Confidence            346899999999999999988776  46777889999998   566676665    5433568899999976  899999


Q ss_pred             eCCCCccHHHH-HHHHcCCCCCeEEEecCCCCCHHH
Q 017143           81 STPNMTHYQIL-MDIINHPKPHHVLVEKPLCTTVAD  115 (376)
Q Consensus        81 ~t~~~~h~~~~-~~al~~~~g~~Vl~EKP~a~~~~e  115 (376)
                      |||...|.+++ ...++  .|+||.+.........|
T Consensus       201 aTps~~~~pvl~~~~l~--~G~~V~~vgs~~p~~~E  234 (350)
T 1x7d_A          201 VTADKAYATIITPDMLE--PGMHLNAVGGDCPGKTE  234 (350)
T ss_dssp             CCCCSSEEEEECGGGCC--TTCEEEECSCCBTTBEE
T ss_pred             eccCCCCCceecHHHcC--CCCEEEECCCCCCCcee
Confidence            99987554433 35788  89999999776555333

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=98.65  E-value=1.8e-07  Score=84.64  Aligned_cols=111  Identities=21%  Similarity=0.305  Sum_probs=79.7

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      +++||+|||+|.+|..+...+...   +.+|+ ++|++++   +++++.++ |+  ..++++++++.+  .|+|++++|.
T Consensus         3 ~~~~i~iiG~G~~G~~~a~~l~~~---g~~V~-~~~~~~~---~~~~~~~~-g~--~~~~~~~~~~~~--~D~vi~~vp~   70 (301)
T 3cky_A            3 KSIKIGFIGLGAMGKPMAINLLKE---GVTVY-AFDLMEA---NVAAVVAQ-GA--QACENNQKVAAA--SDIIFTSLPN   70 (301)
T ss_dssp             -CCEEEEECCCTTHHHHHHHHHHT---TCEEE-EECSSHH---HHHHHHTT-TC--EECSSHHHHHHH--CSEEEECCSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHHC---CCeEE-EEeCCHH---HHHHHHHC-CC--eecCCHHHHHhC--CCEEEEECCC
Confidence            368999999999999999888775   67765 7899987   44455443 64  477899999886  8999999998


Q ss_pred             CccHHHHHH-------HHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEE
Q 017143           85 MTHYQILMD-------IINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQ  132 (376)
Q Consensus        85 ~~h~~~~~~-------al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~  132 (376)
                      ..|.+.+..       .++  .|+.|+ ..- +......++|.+...+. ++.++
T Consensus        71 ~~~~~~v~~~~~~l~~~l~--~~~~vv-~~~-~~~~~~~~~l~~~~~~~-g~~~~  120 (301)
T 3cky_A           71 AGIVETVMNGPGGVLSACK--AGTVIV-DMS-SVSPSSTLKMAKVAAEK-GIDYV  120 (301)
T ss_dssp             HHHHHHHHHSTTCHHHHSC--TTCEEE-ECC-CCCHHHHHHHHHHHHHT-TCEEE
T ss_pred             HHHHHHHHcCcchHhhcCC--CCCEEE-ECC-CCCHHHHHHHHHHHHHc-CCeEE
Confidence            887766552       455  566554 432 33456677788877443 65554

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.65  E-value=1.7e-08  Score=80.97  Aligned_cols=87  Identities=15%  Similarity=0.209  Sum_probs=67.6

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ..+|+|||+|.+|..++..+...   +++ +.+++++++   ++++++++++.....++++++++..  .|+|+.+||..
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~---g~~-v~v~~r~~~---~~~~~a~~~~~~~~~~~~~~~~~~~--~Divi~at~~~   91 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYP---QYK-VTVAGRNID---HVRAFAEKYEYEYVLINDIDSLIKN--NDVIITATSSK   91 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTT---TCE-EEEEESCHH---HHHHHHHHHTCEEEECSCHHHHHHT--CSEEEECSCCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC---CCE-EEEEcCCHH---HHHHHHHHhCCceEeecCHHHHhcC--CCEEEEeCCCC
Confidence            36899999999999998887764   788 779999988   6777888888654467899999986  89999999976


Q ss_pred             ccHHHHHHHHcCCCCCeEE
Q 017143           86 THYQILMDIINHPKPHHVL  104 (376)
Q Consensus        86 ~h~~~~~~al~~~~g~~Vl  104 (376)
                      . ..+....++  .|++|+
T Consensus        92 ~-~~~~~~~l~--~g~~vi  107 (144)
T 3oj0_A           92 T-PIVEERSLM--PGKLFI  107 (144)
T ss_dssp             S-CSBCGGGCC--TTCEEE
T ss_pred             C-cEeeHHHcC--CCCEEE
Confidence            3 233346677  666654

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=98.61  E-value=2.7e-08  Score=79.69  Aligned_cols=113  Identities=12%  Similarity=0.107  Sum_probs=81.3

Q ss_pred             ceeEEEEeC----ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEe
Q 017143            6 TVKYGIIGM----GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         6 ~~~v~iiG~----G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~   81 (376)
                      +.+|+|||+    |.+|..++..+.+.   +++++ .++++..    .++   -.|++  .|.|++++.+.  +|+|+|+
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~---G~~v~-~vnp~~~----g~~---i~G~~--~~~sl~el~~~--~Dlvii~   77 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQ---GYHVI-PVSPKVA----GKT---LLGQQ--GYATLADVPEK--VDMVDVF   77 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHH---TCCEE-EECSSST----TSE---ETTEE--CCSSTTTCSSC--CSEEECC
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHC---CCEEE-EeCCccc----ccc---cCCee--ccCCHHHcCCC--CCEEEEE
Confidence            578999999    78999998888776   67733 3455431    011   14754  99999998764  8999999


Q ss_pred             CCCCccHHHHHHHHcCCCC-CeEEEecCCCCCHHHHHHHHHHHHhCCCeEEE-EeeccccCH
Q 017143           82 TPNMTHYQILMDIINHPKP-HHVLVEKPLCTTVADCKKVVDAARKRPDILVQ-VGLEYRYMP  141 (376)
Q Consensus        82 t~~~~h~~~~~~al~~~~g-~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~-v~~~~r~~p  141 (376)
                      +|+..+.+++.++++  .| +.|+++. .+.    .++|.+.+ ++.|+.+. .++.....|
T Consensus        78 vp~~~v~~v~~~~~~--~g~~~i~i~~-~~~----~~~l~~~a-~~~Gi~~igpnc~g~~~~  131 (145)
T 2duw_A           78 RNSEAAWGVAQEAIA--IGAKTLWLQL-GVI----NEQAAVLA-REAGLSVVMDRCPAIELP  131 (145)
T ss_dssp             SCSTHHHHHHHHHHH--HTCCEEECCT-TCC----CHHHHHHH-HTTTCEEECSCCHHHHST
T ss_pred             eCHHHHHHHHHHHHH--cCCCEEEEcC-ChH----HHHHHHHH-HHcCCEEEcCCeeeEEcc
Confidence            999999999999988  45 7788883 222    67889999 45577665 444444444

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=98.61  E-value=2.6e-07  Score=82.95  Aligned_cols=109  Identities=22%  Similarity=0.242  Sum_probs=81.4

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      +||+|||+|.||..+...+.+.   +.+|+ ++|+++++   ++++.+ .|+  ..++++++++++  .|+|++|+|+..
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~---G~~V~-~~dr~~~~---~~~~~~-~g~--~~~~~~~~~~~~--aDvvi~~vp~~~   69 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKA---GCSVT-IWNRSPEK---AEELAA-LGA--ERAATPCEVVES--CPVTFAMLADPA   69 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCEEE-EECSSGGG---GHHHHH-TTC--EECSSHHHHHHH--CSEEEECCSSHH
T ss_pred             CEEEEEeecHHHHHHHHHHHHC---CCeEE-EEcCCHHH---HHHHHH-CCC--eecCCHHHHHhc--CCEEEEEcCCHH
Confidence            6899999999999999888875   67866 78999984   444433 364  478999999987  799999999766


Q ss_pred             cHHHHH-------HHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEE
Q 017143           87 HYQILM-------DIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQ  132 (376)
Q Consensus        87 h~~~~~-------~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~  132 (376)
                      +.+.+.       ..++  .|+.| +.. -+.++...+++.+...+. ++.+.
T Consensus        70 ~~~~v~~~~~~l~~~l~--~~~~v-i~~-st~~~~~~~~~~~~~~~~-g~~~~  117 (287)
T 3pef_A           70 AAEEVCFGKHGVLEGIG--EGRGY-VDM-STVDPATSQRIGVAVVAK-GGRFL  117 (287)
T ss_dssp             HHHHHHHSTTCHHHHCC--TTCEE-EEC-SCCCHHHHHHHHHHHHHT-TCEEE
T ss_pred             HHHHHHcCcchHhhcCC--CCCEE-EeC-CCCCHHHHHHHHHHHHHh-CCEEE
Confidence            555444       4566  66555 444 466888999999888554 65543

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=98.61  E-value=9e-08  Score=85.01  Aligned_cols=81  Identities=17%  Similarity=0.186  Sum_probs=66.2

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ++||+|||+|.+|..+...+...   +.+++.++|++++   +++++.+++|+.  .++++++++++  .|+|++++|+.
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~~---g~~~v~~~~~~~~---~~~~~~~~~g~~--~~~~~~~~~~~--~Dvvi~av~~~   79 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYRK---GFRIVQVYSRTEE---SARELAQKVEAE--YTTDLAEVNPY--AKLYIVSLKDS   79 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHH---TCCEEEEECSSHH---HHHHHHHHTTCE--EESCGGGSCSC--CSEEEECCCHH
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHC---CCeEEEEEeCCHH---HHHHHHHHcCCc--eeCCHHHHhcC--CCEEEEecCHH
Confidence            57999999999999999888876   5777889999988   566677777864  78889888865  89999999999


Q ss_pred             ccHHHHHHHHc
Q 017143           86 THYQILMDIIN   96 (376)
Q Consensus        86 ~h~~~~~~al~   96 (376)
                      .|.+++.+..+
T Consensus        80 ~~~~v~~~l~~   90 (266)
T 3d1l_A           80 AFAELLQGIVE   90 (266)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            88777665543

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=98.61  E-value=3.7e-08  Score=90.88  Aligned_cols=91  Identities=20%  Similarity=0.314  Sum_probs=66.3

Q ss_pred             CCceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCC-----------CCCccC--CHHHH
Q 017143            4 NDTVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDW-----------PLKVFP--GHQEL   69 (376)
Q Consensus         4 ~~~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~   69 (376)
                      ++++||||+| +|.+|+.+++.|..+  ++++|+++++.+..   ..+.+.+.|+.           + ..+.  +.++ 
T Consensus         2 ~~~~kV~IiGAtG~iG~~llr~L~~~--p~~elvai~~s~~~---~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~-   74 (350)
T 2ep5_A            2 ADKIKVSLLGSTGMVGQKMVKMLAKH--PYLELVKVSASPSK---IGKKYKDAVKWIEQGDIPEEVQD-LPIVSTNYED-   74 (350)
T ss_dssp             CCCEEEEEESCSSHHHHHHHHHHTTC--SSEEEEEEECCGGG---TTSBHHHHCCCCSSSSCCHHHHT-CBEECSSGGG-
T ss_pred             CCCcEEEEECcCCHHHHHHHHHHHhC--CCcEEEEEecChhh---cCCCHHHhcCcccccccccCCce-eEEeeCCHHH-
Confidence            3469999999 899999999999888  89999999843222   12223333321           1 1122  2333 


Q ss_pred             hhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEE
Q 017143           70 LDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLV  105 (376)
Q Consensus        70 l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~  105 (376)
                      +.  ++|+|+.|+|+..|.+++.++++  +|++|+.
T Consensus        75 ~~--~vDvVf~atp~~~s~~~a~~~~~--aG~~VId  106 (350)
T 2ep5_A           75 HK--DVDVVLSALPNELAESIELELVK--NGKIVVS  106 (350)
T ss_dssp             GT--TCSEEEECCCHHHHHHHHHHHHH--TTCEEEE
T ss_pred             hc--CCCEEEECCChHHHHHHHHHHHH--CCCEEEE
Confidence            33  59999999999999999999999  8899776

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=98.61  E-value=7.3e-08  Score=77.09  Aligned_cols=103  Identities=13%  Similarity=0.095  Sum_probs=78.1

Q ss_pred             ceeEEEEeC----ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEe
Q 017143            6 TVKYGIIGM----GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         6 ~~~v~iiG~----G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~   81 (376)
                      +.+|+|||+    |.+|..++..+.+.   +++++.   .++..    +   +-.|++  +|.|++++.+.  +|+|+|+
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~---G~~v~~---Vnp~~----~---~i~G~~--~y~sl~~l~~~--vDlvvi~   84 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEH---GYDVYP---VNPKY----E---EVLGRK--CYPSVLDIPDK--IEVVDLF   84 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHT---TCEEEE---ECTTC----S---EETTEE--CBSSGGGCSSC--CSEEEEC
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHC---CCEEEE---ECCCC----C---eECCee--ccCCHHHcCCC--CCEEEEE
Confidence            578999999    68899998888775   777444   34431    1   124755  99999998764  9999999


Q ss_pred             CCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEE
Q 017143           82 TPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQ  132 (376)
Q Consensus        82 t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~  132 (376)
                      +|+..+.+++.+|++  +|...++-.+...    .+++.+.+++ +|+.+.
T Consensus        85 vp~~~~~~vv~~~~~--~gi~~i~~~~g~~----~~~l~~~a~~-~Gi~vv  128 (144)
T 2d59_A           85 VKPKLTMEYVEQAIK--KGAKVVWFQYNTY----NREASKKADE-AGLIIV  128 (144)
T ss_dssp             SCHHHHHHHHHHHHH--HTCSEEEECTTCC----CHHHHHHHHH-TTCEEE
T ss_pred             eCHHHHHHHHHHHHH--cCCCEEEECCCch----HHHHHHHHHH-cCCEEE
Confidence            999999999999999  6777777666553    5788888955 477743

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=98.58  E-value=5.3e-07  Score=82.25  Aligned_cols=112  Identities=15%  Similarity=0.108  Sum_probs=82.1

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      +++||+|||+|.+|......+.+.   +.+|+ ++|++++   +++++.+. |+  ..++++++++++  .|+|++++|+
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~---G~~V~-~~dr~~~---~~~~l~~~-g~--~~~~~~~e~~~~--aDvVi~~vp~   97 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEA---GYALQ-VWNRTPA---RAASLAAL-GA--TIHEQARAAARD--ADIVVSMLEN   97 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHT---TCEEE-EECSCHH---HHHHHHTT-TC--EEESSHHHHHTT--CSEEEECCSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHhC---CCeEE-EEcCCHH---HHHHHHHC-CC--EeeCCHHHHHhc--CCEEEEECCC
Confidence            457999999999999998888875   77865 6899988   45555544 64  478999999987  8999999998


Q ss_pred             CccHHHHHH------HHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 017143           85 MTHYQILMD------IINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQV  133 (376)
Q Consensus        85 ~~h~~~~~~------al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v  133 (376)
                      ..+.+.+..      .+.  .|+ +++..- +.++...+++.+...+. ++.+.-
T Consensus        98 ~~~~~~v~~~~~~~~~l~--~~~-~vi~~s-t~~~~~~~~~~~~~~~~-g~~~~~  147 (320)
T 4dll_A           98 GAVVQDVLFAQGVAAAMK--PGS-LFLDMA-SITPREARDHAARLGAL-GIAHLD  147 (320)
T ss_dssp             HHHHHHHHTTTCHHHHCC--TTC-EEEECS-CCCHHHHHHHHHHHHHT-TCEEEE
T ss_pred             HHHHHHHHcchhHHhhCC--CCC-EEEecC-CCCHHHHHHHHHHHHHc-CCEEEe
Confidence            766655542      345  554 445443 45788888888888554 655443

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=98.58  E-value=6.5e-07  Score=81.38  Aligned_cols=110  Identities=15%  Similarity=0.166  Sum_probs=78.5

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh--hhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEe
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL--QSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~   81 (376)
                      +.++||+|||+|.||......|.+.   +.+-+.++|+++  +   +.+. ..+.|+  ..+++.++++++  .|+|+++
T Consensus        22 ~~~~~I~iIG~G~mG~~~A~~L~~~---G~~~V~~~dr~~~~~---~~~~-~~~~g~--~~~~~~~e~~~~--aDvVi~~   90 (312)
T 3qsg_A           22 SNAMKLGFIGFGEAASAIASGLRQA---GAIDMAAYDAASAES---WRPR-AEELGV--SCKASVAEVAGE--CDVIFSL   90 (312)
T ss_dssp             ---CEEEEECCSHHHHHHHHHHHHH---SCCEEEEECSSCHHH---HHHH-HHHTTC--EECSCHHHHHHH--CSEEEEC
T ss_pred             CCCCEEEEECccHHHHHHHHHHHHC---CCCeEEEEcCCCCHH---HHHH-HHHCCC--EEeCCHHHHHhc--CCEEEEe
Confidence            3468999999999999999988886   562344789973  4   2333 335575  478899999987  8999999


Q ss_pred             CCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q 017143           82 TPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARK  125 (376)
Q Consensus        82 t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~  125 (376)
                      +|+..+.+.+...+..-....+++..- +..+...+++.+...+
T Consensus        91 vp~~~~~~~~~~l~~~l~~~~ivvd~s-t~~~~~~~~~~~~~~~  133 (312)
T 3qsg_A           91 VTAQAALEVAQQAGPHLCEGALYADFT-SCSPAVKRAIGDVISR  133 (312)
T ss_dssp             SCTTTHHHHHHHHGGGCCTTCEEEECC-CCCHHHHHHHHHHHHH
T ss_pred             cCchhHHHHHHhhHhhcCCCCEEEEcC-CCCHHHHHHHHHHHHh
Confidence            999998887766544211235777665 5677888888877743

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=98.57  E-value=1.2e-07  Score=82.11  Aligned_cols=129  Identities=16%  Similarity=0.075  Sum_probs=97.1

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      .+||+++|+|.+|+..+..     . +++++++++   +   ++.    ++|+  ..++|++++++  ++|+|+-|.++.
T Consensus        12 ~~rV~i~G~GaIG~~v~~~-----~-~leLv~v~~---~---k~g----elgv--~a~~d~d~lla--~pD~VVe~A~~~   71 (253)
T 1j5p_A           12 HMTVLIIGMGNIGKKLVEL-----G-NFEKIYAYD---R---ISK----DIPG--VVRLDEFQVPS--DVSTVVECASPE   71 (253)
T ss_dssp             CCEEEEECCSHHHHHHHHH-----S-CCSEEEEEC---S---SCC----CCSS--SEECSSCCCCT--TCCEEEECSCHH
T ss_pred             cceEEEECcCHHHHHHHhc-----C-CcEEEEEEe---c---ccc----ccCc--eeeCCHHHHhh--CCCEEEECCCHH
Confidence            5899999999999987665     2 899999998   3   222    2254  47899999995  599999999887


Q ss_pred             ccHHHHHHHHcCCCCCeEEEecCCCC-CHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEEEEe
Q 017143           86 THYQILMDIINHPKPHHVLVEKPLCT-TVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIR  164 (376)
Q Consensus        86 ~h~~~~~~al~~~~g~~Vl~EKP~a~-~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~~~~  164 (376)
                      .=.+++.++|+  +|++|++=-+.++ +.+-.++|.++| +++|..+++..---..  ...+ ....    |.|..+.+.
T Consensus        72 av~e~~~~iL~--aG~dvv~~S~gaLad~~l~~~L~~aA-~~gg~~l~vpSGAi~G--lD~l-~aa~----g~l~~V~~~  141 (253)
T 1j5p_A           72 AVKEYSLQILK--NPVNYIIISTSAFADEVFRERFFSEL-KNSPARVFFPSGAIGG--LDVL-SSIK----DFVKNVRIE  141 (253)
T ss_dssp             HHHHHHHHHTT--SSSEEEECCGGGGGSHHHHHHHHHHH-HTCSCEEECCCTTCCC--HHHH-HHHG----GGEEEEEEE
T ss_pred             HHHHHHHHHHH--CCCCEEEcChhhhcCHHHHHHHHHHH-HHCCCeEEecCCcccc--hhHH-HHhc----CCccEEEEE
Confidence            77778999999  9999999888665 555568888888 6778888765444333  4443 2222    778777775

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=98.57  E-value=3.3e-07  Score=81.91  Aligned_cols=100  Identities=15%  Similarity=0.188  Sum_probs=71.1

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCc---EEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEe
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGV---SVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~---~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~   81 (376)
                      +++||+|||+|.||..++..+.+.   ++   + +.++|++++   +++++.+++|+.  .+++..+++++  .|+|+++
T Consensus         2 ~~~~I~iIG~G~mG~aia~~l~~~---g~~~~~-V~v~dr~~~---~~~~l~~~~gi~--~~~~~~~~~~~--aDvVila   70 (280)
T 3tri_A            2 NTSNITFIGGGNMARNIVVGLIAN---GYDPNR-ICVTNRSLD---KLDFFKEKCGVH--TTQDNRQGALN--ADVVVLA   70 (280)
T ss_dssp             CCSCEEEESCSHHHHHHHHHHHHT---TCCGGG-EEEECSSSH---HHHHHHHTTCCE--EESCHHHHHSS--CSEEEEC
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHC---CCCCCe-EEEEeCCHH---HHHHHHHHcCCE--EeCChHHHHhc--CCeEEEE
Confidence            357999999999999999888875   33   4 458999998   566777778864  78899999876  8999999


Q ss_pred             CCCCccHHHHHHHHcC-CCCCeEEEecCCCCCHHH
Q 017143           82 TPNMTHYQILMDIINH-PKPHHVLVEKPLCTTVAD  115 (376)
Q Consensus        82 t~~~~h~~~~~~al~~-~~g~~Vl~EKP~a~~~~e  115 (376)
                      +|++...+++.+.... -.++++++--=-+.+.+.
T Consensus        71 v~p~~~~~vl~~l~~~~l~~~~iiiS~~agi~~~~  105 (280)
T 3tri_A           71 VKPHQIKMVCEELKDILSETKILVISLAVGVTTPL  105 (280)
T ss_dssp             SCGGGHHHHHHHHHHHHHTTTCEEEECCTTCCHHH
T ss_pred             eCHHHHHHHHHHHHhhccCCCeEEEEecCCCCHHH
Confidence            9987766665544221 023445553223344444

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.56  E-value=6.7e-07  Score=68.48  Aligned_cols=106  Identities=20%  Similarity=0.145  Sum_probs=78.6

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC--Ccc---CCHHHHhhCCCCCEEE
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL--KVF---PGHQELLDSGLCDVVV   79 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~l~~~~~D~V~   79 (376)
                      ++.+|+|+|+|.+|...+..+...  ...+++ ++++++++   .+.+. ..++..  .-.   +++++++.  ++|+|+
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~--g~~~v~-~~~r~~~~---~~~~~-~~~~~~~~~d~~~~~~~~~~~~--~~d~vi   74 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTS--SNYSVT-VADHDLAA---LAVLN-RMGVATKQVDAKDEAGLAKALG--GFDAVI   74 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHC--SSEEEE-EEESCHHH---HHHHH-TTTCEEEECCTTCHHHHHHHTT--TCSEEE
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhC--CCceEE-EEeCCHHH---HHHHH-hCCCcEEEecCCCHHHHHHHHc--CCCEEE
Confidence            357999999999999998888876  337755 67888874   33433 334321  112   23445554  499999


Q ss_pred             EeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHH
Q 017143           80 VSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAAR  124 (376)
Q Consensus        80 i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~  124 (376)
                      .++|...+..++..+++  .|++++.   ++.+.+..+++.++.+
T Consensus        75 ~~~~~~~~~~~~~~~~~--~g~~~~~---~~~~~~~~~~~~~~~~  114 (118)
T 3ic5_A           75 SAAPFFLTPIIAKAAKA--AGAHYFD---LTEDVAATNAVRALVE  114 (118)
T ss_dssp             ECSCGGGHHHHHHHHHH--TTCEEEC---CCSCHHHHHHHHHHHH
T ss_pred             ECCCchhhHHHHHHHHH--hCCCEEE---ecCcHHHHHHHHHHHH
Confidence            99999999999999999  8888874   7788899999988883

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=98.55  E-value=8.2e-07  Score=82.00  Aligned_cols=114  Identities=17%  Similarity=0.192  Sum_probs=81.0

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhC-CCCCEEEEeCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDS-GLCDVVVVSTP   83 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~D~V~i~t~   83 (376)
                      +++||+|||+|.||..+...|.+.   +.+|+ ++|++++   +++++.+ .|+  ..+++++++++. ..+|+|++++|
T Consensus        21 ~~mkIgiIGlG~mG~~~A~~L~~~---G~~V~-v~dr~~~---~~~~l~~-~g~--~~~~s~~e~~~~a~~~DvVi~~vp   90 (358)
T 4e21_A           21 QSMQIGMIGLGRMGADMVRRLRKG---GHECV-VYDLNVN---AVQALER-EGI--AGARSIEEFCAKLVKPRVVWLMVP   90 (358)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHT---TCEEE-EECSCHH---HHHHHHT-TTC--BCCSSHHHHHHHSCSSCEEEECSC
T ss_pred             cCCEEEEECchHHHHHHHHHHHhC---CCEEE-EEeCCHH---HHHHHHH-CCC--EEeCCHHHHHhcCCCCCEEEEeCC
Confidence            458999999999999999988885   67765 7899988   4555543 364  478899999886 34699999999


Q ss_pred             CCccHHHHHHHHc-CC-CCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEE
Q 017143           84 NMTHYQILMDIIN-HP-KPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQ  132 (376)
Q Consensus        84 ~~~h~~~~~~al~-~~-~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~  132 (376)
                      +. +.+-+...+. .- .| .+++.. -+......+++.+.+.++ ++.+.
T Consensus        91 ~~-~v~~vl~~l~~~l~~g-~iiId~-st~~~~~~~~~~~~l~~~-g~~~v  137 (358)
T 4e21_A           91 AA-VVDSMLQRMTPLLAAN-DIVIDG-GNSHYQDDIRRADQMRAQ-GITYV  137 (358)
T ss_dssp             GG-GHHHHHHHHGGGCCTT-CEEEEC-SSCCHHHHHHHHHHHHTT-TCEEE
T ss_pred             HH-HHHHHHHHHHhhCCCC-CEEEeC-CCCChHHHHHHHHHHHHC-CCEEE
Confidence            99 6555444432 10 23 466654 355778888888888444 66543

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=98.53  E-value=8.6e-07  Score=80.01  Aligned_cols=110  Identities=22%  Similarity=0.383  Sum_probs=79.0

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ++||+|||+|.+|..+...+...   +.+| .++|+++++   ++++.++ |+  ..++++++++++  .|+|++++|+.
T Consensus         5 ~m~i~iiG~G~~G~~~a~~l~~~---g~~V-~~~~~~~~~---~~~~~~~-g~--~~~~~~~~~~~~--~D~vi~~v~~~   72 (299)
T 1vpd_A            5 TMKVGFIGLGIMGKPMSKNLLKA---GYSL-VVSDRNPEA---IADVIAA-GA--ETASTAKAIAEQ--CDVIITMLPNS   72 (299)
T ss_dssp             -CEEEEECCSTTHHHHHHHHHHT---TCEE-EEECSCHHH---HHHHHHT-TC--EECSSHHHHHHH--CSEEEECCSSH
T ss_pred             cceEEEECchHHHHHHHHHHHhC---CCEE-EEEeCCHHH---HHHHHHC-CC--eecCCHHHHHhC--CCEEEEECCCH
Confidence            36999999999999999888775   6775 578999874   4444433 65  477899999876  89999999988


Q ss_pred             ccHHHHH-------HHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEE
Q 017143           86 THYQILM-------DIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQ  132 (376)
Q Consensus        86 ~h~~~~~-------~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~  132 (376)
                      .|.+.+.       ..++  .|+ +++..- +......++|.+...+ .++.+.
T Consensus        73 ~~~~~~~~~~~~l~~~l~--~~~-~vv~~s-~~~~~~~~~l~~~~~~-~g~~~~  121 (299)
T 1vpd_A           73 PHVKEVALGENGIIEGAK--PGT-VLIDMS-SIAPLASREISDALKA-KGVEML  121 (299)
T ss_dssp             HHHHHHHHSTTCHHHHCC--TTC-EEEECS-CCCHHHHHHHHHHHHT-TTCEEE
T ss_pred             HHHHHHHhCcchHhhcCC--CCC-EEEECC-CCCHHHHHHHHHHHHH-cCCeEE
Confidence            7766555       3455  565 456653 4455667788887744 365443

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=98.53  E-value=3.4e-07  Score=82.50  Aligned_cols=109  Identities=16%  Similarity=0.219  Sum_probs=78.4

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ++||+|||+|.+|..+...+...   +.+|+ ++| ++++   ++++.++ |+  ..++++++++++  .|+|++++|..
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~---g~~V~-~~~-~~~~---~~~~~~~-g~--~~~~~~~~~~~~--~D~vi~~vp~~   69 (295)
T 1yb4_A            3 AMKLGFIGLGIMGSPMAINLARA---GHQLH-VTT-IGPV---ADELLSL-GA--VNVETARQVTEF--ADIIFIMVPDT   69 (295)
T ss_dssp             -CEEEECCCSTTHHHHHHHHHHT---TCEEE-ECC-SSCC---CHHHHTT-TC--BCCSSHHHHHHT--CSEEEECCSSH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhC---CCEEE-EEc-CHHH---HHHHHHc-CC--cccCCHHHHHhc--CCEEEEECCCH
Confidence            47999999999999998888775   67875 778 7774   4444433 64  477899999876  89999999999


Q ss_pred             ccHHHHHH-------HHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEE
Q 017143           86 THYQILMD-------IINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQ  132 (376)
Q Consensus        86 ~h~~~~~~-------al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~  132 (376)
                      .|.+.+..       .++  .|+. ++... +......++|.+.+.+ .++.++
T Consensus        70 ~~~~~v~~~~~~l~~~l~--~~~~-vv~~s-~~~~~~~~~l~~~~~~-~g~~~~  118 (295)
T 1yb4_A           70 PQVEDVLFGEHGCAKTSL--QGKT-IVDMS-SISPIETKRFAQRVNE-MGADYL  118 (295)
T ss_dssp             HHHHHHHHSTTSSTTSCC--TTEE-EEECS-CCCHHHHHHHHHHHHT-TTEEEE
T ss_pred             HHHHHHHhCchhHhhcCC--CCCE-EEECC-CCCHHHHHHHHHHHHH-cCCeEE
Confidence            88776664       244  4554 45543 3466778888888844 466554

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=98.52  E-value=4.8e-07  Score=79.34  Aligned_cols=99  Identities=13%  Similarity=0.210  Sum_probs=69.4

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCc----EEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEe
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGV----SVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~----~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~   81 (376)
                      ++||+|||+|.+|..+...+.+.   +.    +| .++|++++   +++++++++|+.  .+++.++++++  .|+|+++
T Consensus         2 ~~~i~iIG~G~mG~~~a~~l~~~---g~~~~~~V-~~~~r~~~---~~~~~~~~~g~~--~~~~~~e~~~~--aDvVila   70 (247)
T 3gt0_A            2 DKQIGFIGCGNMGMAMIGGMINK---NIVSSNQI-ICSDLNTA---NLKNASEKYGLT--TTTDNNEVAKN--ADILILS   70 (247)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHT---TSSCGGGE-EEECSCHH---HHHHHHHHHCCE--ECSCHHHHHHH--CSEEEEC
T ss_pred             CCeEEEECccHHHHHHHHHHHhC---CCCCCCeE-EEEeCCHH---HHHHHHHHhCCE--EeCChHHHHHh--CCEEEEE
Confidence            36899999999999999888775   43    54 47899988   566777777864  78899999987  8999999


Q ss_pred             CCCCccHHHHHHHHcCC-CCCeEEEecCCCCCHHHH
Q 017143           82 TPNMTHYQILMDIINHP-KPHHVLVEKPLCTTVADC  116 (376)
Q Consensus        82 t~~~~h~~~~~~al~~~-~g~~Vl~EKP~a~~~~e~  116 (376)
                      +|++...+++.+....- .|+ +++---.+.+.+..
T Consensus        71 v~~~~~~~v~~~l~~~l~~~~-~vvs~~~gi~~~~l  105 (247)
T 3gt0_A           71 IKPDLYASIINEIKEIIKNDA-IIVTIAAGKSIEST  105 (247)
T ss_dssp             SCTTTHHHHC---CCSSCTTC-EEEECSCCSCHHHH
T ss_pred             eCHHHHHHHHHHHHhhcCCCC-EEEEecCCCCHHHH
Confidence            98877666665443210 344 44433334555543

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=98.52  E-value=6.7e-07  Score=80.62  Aligned_cols=110  Identities=17%  Similarity=0.243  Sum_probs=81.7

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      +||+|||+|.+|..+...+.+.   +.+|+ ++|++++   +++++.+ .|+  ..+++.++++.+  .|+|++++|...
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~---g~~V~-~~~~~~~---~~~~~~~-~g~--~~~~~~~~~~~~--~Dvvi~~vp~~~   68 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKH---GYPLI-IYDVFPD---ACKEFQD-AGE--QVVSSPADVAEK--ADRIITMLPTSI   68 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHT---TCCEE-EECSSTH---HHHHHHT-TTC--EECSSHHHHHHH--CSEEEECCSSHH
T ss_pred             CeEEEEeccHHHHHHHHHHHHC---CCEEE-EEeCCHH---HHHHHHH-cCC--eecCCHHHHHhc--CCEEEEeCCCHH
Confidence            3799999999999998888775   56755 7899987   4444443 364  477899999876  899999999888


Q ss_pred             cHHHHHHH-------HcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 017143           87 HYQILMDI-------INHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVG  134 (376)
Q Consensus        87 h~~~~~~a-------l~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~  134 (376)
                      |.+.+...       ++  .|+ +++. .-+.+....+++.+...+. ++. +++
T Consensus        69 ~~~~v~~~~~~~~~~l~--~~~-~vv~-~s~~~~~~~~~~~~~~~~~-g~~-~~~  117 (296)
T 2gf2_A           69 NAIEAYSGANGILKKVK--KGS-LLID-SSTIDPAVSKELAKEVEKM-GAV-FMD  117 (296)
T ss_dssp             HHHHHHHSTTSGGGTCC--TTC-EEEE-CSCCCHHHHHHHHHHHHHT-TCE-EEE
T ss_pred             HHHHHHhCchhHHhcCC--CCC-EEEE-CCCCCHHHHHHHHHHHHHc-CCE-EEE
Confidence            77766653       24  454 7777 7788999999988877444 543 344

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=98.50  E-value=1.8e-07  Score=86.07  Aligned_cols=146  Identities=12%  Similarity=0.080  Sum_probs=92.4

Q ss_pred             CceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcC----CCCCccCCHHHHhhCCCCCEEE
Q 017143            5 DTVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFD----WPLKVFPGHQELLDSGLCDVVV   79 (376)
Q Consensus         5 ~~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~D~V~   79 (376)
                      +++||+|+| +|.+|+.+++.|.+.  +++++++++++...    .+++.+.++    .....+.+.++ +  .++|+|+
T Consensus         3 ~~~kV~IiGAtG~iG~~llr~L~~~--p~~elv~v~s~~~~----g~~~~~~~~~~~g~~~~~~~~~~~-~--~~vDvV~   73 (345)
T 2ozp_A            3 GKKTLSIVGASGYAGGEFLRLALSH--PYLEVKQVTSRRFA----GEPVHFVHPNLRGRTNLKFVPPEK-L--EPADILV   73 (345)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHTC--TTEEEEEEBCSTTT----TSBGGGTCGGGTTTCCCBCBCGGG-C--CCCSEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHcC--CCcEEEEEECchhh----CchhHHhCchhcCcccccccchhH-h--cCCCEEE
Confidence            468999999 799999999999887  89999999985432    122222221    11012334443 3  3599999


Q ss_pred             EeCCCCccHHHHHHHHcCCCCCeEEEecC-CCCC-HH--------------------HHHHHHHHHHhCCCeEEEEeecc
Q 017143           80 VSTPNMTHYQILMDIINHPKPHHVLVEKP-LCTT-VA--------------------DCKKVVDAARKRPDILVQVGLEY  137 (376)
Q Consensus        80 i~t~~~~h~~~~~~al~~~~g~~Vl~EKP-~a~~-~~--------------------e~~~l~~~a~~~~~~~~~v~~~~  137 (376)
                      .|+|+..|.+.+.++++  +|++|+.=-. +-.+ .+                    -.-|+-+..-+..  .+..+-++
T Consensus        74 ~a~g~~~s~~~a~~~~~--aG~~VId~Sa~~r~~~~~~y~~~y~~h~~~e~l~~~vygvpE~n~~~i~~~--~iIanp~C  149 (345)
T 2ozp_A           74 LALPHGVFAREFDRYSA--LAPVLVDLSADFRLKDPELYRRYYGEHPRPDLLGRFVYAVPELYREALKGA--DWIAGAGC  149 (345)
T ss_dssp             ECCCTTHHHHTHHHHHT--TCSEEEECSSTTSCSCHHHHHHHHCCCSSGGGTTSSEECCHHHHHHHHHTC--SEEECCCH
T ss_pred             EcCCcHHHHHHHHHHHH--CCCEEEEcCccccCCChHHHHhhhccccchhhhccCcEeccccCHHHhhcC--CEEeCCCc
Confidence            99999999999999999  8888765332 2211 11                    0112221111222  34455555


Q ss_pred             ccCHHHHHHHHHHHcCCCC--ceEEEEE
Q 017143          138 RYMPPVAKLIQIVKSGSIG--QVKMVAI  163 (376)
Q Consensus       138 r~~p~~~~~k~~i~~g~iG--~i~~~~~  163 (376)
                      .-......++-+.+.+.|.  ++.....
T Consensus       150 ~tt~~~~~l~pL~~~~~i~~~~i~v~t~  177 (345)
T 2ozp_A          150 NATATLLGLYPLLKAGVLKPTPIFVTLL  177 (345)
T ss_dssp             HHHHHHHHHHHHHHTTCBCSSCEEEEEE
T ss_pred             HHHHHHHHHHHHHHhcCCCCCeEEEEEE
Confidence            5566677788888888777  6654444

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=98.50  E-value=9.6e-07  Score=80.19  Aligned_cols=112  Identities=15%  Similarity=0.239  Sum_probs=82.0

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      ..++||+|||+|.||......|.+.   +.+|+ ++|+++++   ++++. +.|+  ..+++.++++++  .|+|++++|
T Consensus        19 ~~m~~I~iIG~G~mG~~~A~~l~~~---G~~V~-~~dr~~~~---~~~l~-~~g~--~~~~~~~~~~~~--aDvvi~~vp   86 (310)
T 3doj_A           19 SHMMEVGFLGLGIMGKAMSMNLLKN---GFKVT-VWNRTLSK---CDELV-EHGA--SVCESPAEVIKK--CKYTIAMLS   86 (310)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHT---TCEEE-EECSSGGG---GHHHH-HTTC--EECSSHHHHHHH--CSEEEECCS
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHC---CCeEE-EEeCCHHH---HHHHH-HCCC--eEcCCHHHHHHh--CCEEEEEcC
Confidence            3468999999999999999888875   67766 68999984   44443 3465  478899999987  799999999


Q ss_pred             CCccHHHHH---H----HHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEE
Q 017143           84 NMTHYQILM---D----IINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQ  132 (376)
Q Consensus        84 ~~~h~~~~~---~----al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~  132 (376)
                      ...+.+.+.   +    .++  .| .+++..- +.++...+++.+...+. |+.+.
T Consensus        87 ~~~~~~~v~~~~~~l~~~l~--~g-~~vv~~s-t~~~~~~~~~~~~~~~~-g~~~v  137 (310)
T 3doj_A           87 DPCAALSVVFDKGGVLEQIC--EG-KGYIDMS-TVDAETSLKINEAITGK-GGRFV  137 (310)
T ss_dssp             SHHHHHHHHHSTTCGGGGCC--TT-CEEEECS-CCCHHHHHHHHHHHHHT-TCEEE
T ss_pred             CHHHHHHHHhCchhhhhccC--CC-CEEEECC-CCCHHHHHHHHHHHHHc-CCEEE
Confidence            876655544   2    234  44 4556653 56788888898888554 65543

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=98.48  E-value=8.6e-07  Score=82.14  Aligned_cols=93  Identities=18%  Similarity=0.257  Sum_probs=68.1

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-----------C-CccCCHHHHhh
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-----------L-KVFPGHQELLD   71 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-----------~-~~~~~~~~~l~   71 (376)
                      |+++||+|||+|.+|..+...+.+.   +.+|+ ++++++++   ++++.++.++.           + ..++++++++.
T Consensus         2 m~~mki~iiG~G~~G~~~a~~L~~~---g~~V~-~~~r~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (359)
T 1bg6_A            2 IESKTYAVLGLGNGGHAFAAYLALK---GQSVL-AWDIDAQR---IKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVK   74 (359)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHT---TCEEE-EECSCHHH---HHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHT
T ss_pred             CCcCeEEEECCCHHHHHHHHHHHhC---CCEEE-EEeCCHHH---HHHHHhcCCeEEeccccccccccceecCCHHHHHh
Confidence            3457999999999999988888774   67755 78998874   44554443321           1 25678888886


Q ss_pred             CCCCCEEEEeCCCCccHHHHHHH---HcCCCCCeEEEec
Q 017143           72 SGLCDVVVVSTPNMTHYQILMDI---INHPKPHHVLVEK  107 (376)
Q Consensus        72 ~~~~D~V~i~t~~~~h~~~~~~a---l~~~~g~~Vl~EK  107 (376)
                      .  .|+|++++|+..|.+++...   ++  .|..|++.+
T Consensus        75 ~--~D~vi~~v~~~~~~~~~~~l~~~l~--~~~~vv~~~  109 (359)
T 1bg6_A           75 D--ADVILIVVPAIHHASIAANIASYIS--EGQLIILNP  109 (359)
T ss_dssp             T--CSEEEECSCGGGHHHHHHHHGGGCC--TTCEEEESS
T ss_pred             c--CCEEEEeCCchHHHHHHHHHHHhCC--CCCEEEEcC
Confidence            5  89999999999998887665   45  577788883

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=98.48  E-value=9.8e-08  Score=84.65  Aligned_cols=117  Identities=18%  Similarity=0.186  Sum_probs=82.6

Q ss_pred             eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCcc
Q 017143            8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMTH   87 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~h   87 (376)
                      +++|||+|.+|+.++..+...   +.+ +.+++++++   ++++++++++..   +++++++ .+  .|+|+++||...|
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~---g~~-v~v~~r~~~---~~~~l~~~~~~~---~~~~~~~-~~--~Divi~~tp~~~~  184 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREA---GLE-VWVWNRTPQ---RALALAEEFGLR---AVPLEKA-RE--ARLLVNATRVGLE  184 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT---TCC-EEEECSSHH---HHHHHHHHHTCE---ECCGGGG-GG--CSEEEECSSTTTT
T ss_pred             eEEEECCcHHHHHHHHHHHHC---CCE-EEEEECCHH---HHHHHHHHhccc---hhhHhhc-cC--CCEEEEccCCCCC
Confidence            899999999999999988876   455 568999887   567777777752   6788887 54  8999999999877


Q ss_pred             HH----HHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHH
Q 017143           88 YQ----ILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVA  144 (376)
Q Consensus        88 ~~----~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~  144 (376)
                      ..    +....++  .|++|+ +  ++.+..+. +|.+.++++ |+.++.|..........
T Consensus       185 ~~~~~~l~~~~l~--~g~~vi-D--~~~~p~~t-~l~~~a~~~-g~~~v~g~~mlv~q~~~  238 (263)
T 2d5c_A          185 DPSASPLPAELFP--EEGAAV-D--LVYRPLWT-RFLREAKAK-GLKVQTGLPMLAWQGAL  238 (263)
T ss_dssp             CTTCCSSCGGGSC--SSSEEE-E--SCCSSSSC-HHHHHHHHT-TCEEECSHHHHHHHHHH
T ss_pred             CCCCCCCCHHHcC--CCCEEE-E--eecCCccc-HHHHHHHHC-cCEEECcHHHHHHHHHH
Confidence            42    2245677  677554 6  44444444 477778454 88877775444433333

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=98.46  E-value=1.1e-07  Score=80.43  Aligned_cols=103  Identities=13%  Similarity=0.151  Sum_probs=77.9

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChh-hHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQ-SRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      ++.+++|||+|..|...+..+.. ...+++++|++|.+++ +..+    +.-.|+++...+++++++++.++|.++||+|
T Consensus        83 ~~~~V~IvGaG~lG~aLa~~~~~-~~~g~~iVg~~D~dp~~kiG~----~~i~GvpV~~~~dL~~~v~~~~Id~vIIAvP  157 (212)
T 3keo_A           83 STTNVMLVGCGNIGRALLHYRFH-DRNKMQISMAFDLDSNDLVGK----TTEDGIPVYGISTINDHLIDSDIETAILTVP  157 (212)
T ss_dssp             SCEEEEEECCSHHHHHHTTCCCC-TTSSEEEEEEEECTTSTTTTC----BCTTCCBEEEGGGHHHHC-CCSCCEEEECSC
T ss_pred             CCCEEEEECcCHHHHHHHHhhhc-ccCCeEEEEEEeCCchhccCc----eeECCeEEeCHHHHHHHHHHcCCCEEEEecC
Confidence            46899999999999987665422 2369999999999987 4221    0123777444678999999888999999999


Q ss_pred             CCccHHHHHHHHcCCCCCeEEEecCCCCCH
Q 017143           84 NMTHYQILMDIINHPKPHHVLVEKPLCTTV  113 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~  113 (376)
                      ...+.+++..++++| -+.|+.=-|..+++
T Consensus       158 s~~aq~v~d~lv~~G-Ik~I~nFap~~l~v  186 (212)
T 3keo_A          158 STEAQEVADILVKAG-IKGILSFSPVHLTL  186 (212)
T ss_dssp             GGGHHHHHHHHHHHT-CCEEEECSSSCCCC
T ss_pred             chhHHHHHHHHHHcC-CCEEEEcCCcccCC
Confidence            999999999999944 45577777777654

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=98.46  E-value=1.4e-06  Score=78.98  Aligned_cols=113  Identities=13%  Similarity=0.079  Sum_probs=79.4

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      +++||+|||+|.||..+...|.+.   +++|+ ++|+++++   ++++.+. |+  ..+++.++++++  .|+|++++|+
T Consensus         8 ~~~~IgiIG~G~mG~~~A~~l~~~---G~~V~-~~dr~~~~---~~~~~~~-g~--~~~~~~~e~~~~--aDvVi~~vp~   75 (306)
T 3l6d_A            8 FEFDVSVIGLGAMGTIMAQVLLKQ---GKRVA-IWNRSPGK---AAALVAA-GA--HLCESVKAALSA--SPATIFVLLD   75 (306)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHT---TCCEE-EECSSHHH---HHHHHHH-TC--EECSSHHHHHHH--SSEEEECCSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC---CCEEE-EEeCCHHH---HHHHHHC-CC--eecCCHHHHHhc--CCEEEEEeCC
Confidence            357999999999999999888875   67765 68999984   4444443 64  477899999987  8999999998


Q ss_pred             CccHHHHHH-----HHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 017143           85 MTHYQILMD-----IINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVG  134 (376)
Q Consensus        85 ~~h~~~~~~-----al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~  134 (376)
                      ..+.+.+..     .+.  .|+ +++..- +.++...+++.+..++. ++.+.-+
T Consensus        76 ~~~~~~v~~~~~l~~~~--~g~-ivid~s-t~~~~~~~~l~~~~~~~-g~~~vda  125 (306)
T 3l6d_A           76 NHATHEVLGMPGVARAL--AHR-TIVDYT-TNAQDEGLALQGLVNQA-GGHYVKG  125 (306)
T ss_dssp             HHHHHHHHTSTTHHHHT--TTC-EEEECC-CCCTTHHHHHHHHHHHT-TCEEEEE
T ss_pred             HHHHHHHhcccchhhcc--CCC-EEEECC-CCCHHHHHHHHHHHHHc-CCeEEec
Confidence            876554432     234  444 444442 45666777777777444 6555443

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=98.44  E-value=1.5e-06  Score=78.06  Aligned_cols=122  Identities=10%  Similarity=0.040  Sum_probs=77.5

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      |+++||+|||+|.||..+...+.... .+.+|+ ++|+++++   .+++. ++|+....++++++++.+  .|+|++++|
T Consensus         4 M~~~~I~iIG~G~mG~~~a~~l~~~g-~~~~V~-~~d~~~~~---~~~~~-~~g~~~~~~~~~~~~~~~--aDvVilavp   75 (290)
T 3b1f_A            4 MEEKTIYIAGLGLIGASLALGIKRDH-PHYKIV-GYNRSDRS---RDIAL-ERGIVDEATADFKVFAAL--ADVIILAVP   75 (290)
T ss_dssp             GCCCEEEEECCSHHHHHHHHHHHHHC-TTSEEE-EECSSHHH---HHHHH-HTTSCSEEESCTTTTGGG--CSEEEECSC
T ss_pred             cccceEEEEeeCHHHHHHHHHHHhCC-CCcEEE-EEcCCHHH---HHHHH-HcCCcccccCCHHHhhcC--CCEEEEcCC
Confidence            45689999999999999988887751 256754 68998874   33333 345421356788888765  899999999


Q ss_pred             CCccHHHHHHHHcC-CCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEee
Q 017143           84 NMTHYQILMDIINH-PKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGL  135 (376)
Q Consensus        84 ~~~h~~~~~~al~~-~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~  135 (376)
                      +..+.+++.+.... -....+++.. ........+.|.+.. ...++.++.++
T Consensus        76 ~~~~~~v~~~l~~~~l~~~~ivi~~-~~~~~~~~~~l~~~l-~~~~~~~v~~~  126 (290)
T 3b1f_A           76 IKKTIDFIKILADLDLKEDVIITDA-GSTKYEIVRAAEYYL-KDKPVQFVGSH  126 (290)
T ss_dssp             HHHHHHHHHHHHTSCCCTTCEEECC-CSCHHHHHHHHHHHH-TTSSCEEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEC-CCCchHHHHHHHHhc-cccCCEEEEeC
Confidence            99887777665441 0123455532 122333445566655 32255555543

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=98.42  E-value=2.5e-06  Score=81.98  Aligned_cols=114  Identities=13%  Similarity=0.196  Sum_probs=81.0

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc---CCCCCccCCHHHHhhC-CCCCEEEE
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF---DWPLKVFPGHQELLDS-GLCDVVVV   80 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~-~~~D~V~i   80 (376)
                      +++||+|||+|.||..+...+.+.   +++| .++|++++   +++++.+++   |+  ..+.|++++++. .++|+|++
T Consensus         4 ~~~~IgvIG~G~mG~~lA~~L~~~---G~~V-~v~dr~~~---~~~~l~~~~~~~gi--~~~~s~~e~v~~l~~aDvVil   74 (474)
T 2iz1_A            4 AQANFGVVGMAVMGKNLALNVESR---GYTV-AIYNRTTS---KTEEVFKEHQDKNL--VFTKTLEEFVGSLEKPRRIML   74 (474)
T ss_dssp             TTBSEEEECCSHHHHHHHHHHHHT---TCCE-EEECSSHH---HHHHHHHHTTTSCE--EECSSHHHHHHTBCSSCEEEE
T ss_pred             CCCcEEEEeeHHHHHHHHHHHHhC---CCEE-EEEcCCHH---HHHHHHHhCcCCCe--EEeCCHHHHHhhccCCCEEEE
Confidence            358999999999999999888875   6675 58899988   455666554   54  477899999875 35899999


Q ss_pred             eCCCCccHHHHHHH----HcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEE
Q 017143           81 STPNMTHYQILMDI----INHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQ  132 (376)
Q Consensus        81 ~t~~~~h~~~~~~a----l~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~  132 (376)
                      ++|+..+.+.+.+.    ++  .|+ ++++- ......+..++.+.+ +..++.+.
T Consensus        75 avp~~~~v~~vl~~l~~~l~--~g~-iiId~-s~~~~~~~~~l~~~l-~~~g~~~v  125 (474)
T 2iz1_A           75 MVQAGAATDATIKSLLPLLD--IGD-ILIDG-GNTHFPDTMRRNAEL-ADSGINFI  125 (474)
T ss_dssp             CCCTTHHHHHHHHHHGGGCC--TTC-EEEEC-SCCCHHHHHHHHHHT-TTSSCEEE
T ss_pred             EccCchHHHHHHHHHHhhCC--CCC-EEEEC-CCCCHHHHHHHHHHH-HHCCCeEE
Confidence            99998776655543    44  455 55553 234556777888777 44465543

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=98.41  E-value=2e-06  Score=77.84  Aligned_cols=111  Identities=17%  Similarity=0.197  Sum_probs=79.1

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCc-cCCHHHHhhCCCCCEEEEeCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKV-FPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      +++||+|||+|.||......|.+.   +.+|+ ++|++++   +++++.+ .|..  . ++++++++++  .|+|++++|
T Consensus         6 ~~~~I~iIG~G~mG~~~a~~l~~~---G~~V~-~~dr~~~---~~~~~~~-~g~~--~~~~~~~e~~~~--aDvvi~~vp   73 (303)
T 3g0o_A            6 TDFHVGIVGLGSMGMGAARSCLRA---GLSTW-GADLNPQ---ACANLLA-EGAC--GAAASAREFAGV--VDALVILVV   73 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHT---TCEEE-EECSCHH---HHHHHHH-TTCS--EEESSSTTTTTT--CSEEEECCS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC---CCeEE-EEECCHH---HHHHHHH-cCCc--cccCCHHHHHhc--CCEEEEECC
Confidence            357999999999999999888875   77766 6899988   4444443 3643  4 7888888876  899999999


Q ss_pred             CCccHHHHH-------HHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEE
Q 017143           84 NMTHYQILM-------DIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQ  132 (376)
Q Consensus        84 ~~~h~~~~~-------~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~  132 (376)
                      +..+.+.+.       ..++  .|+ +++..- +..+...+++.+...+ .++.+.
T Consensus        74 ~~~~~~~v~~~~~~l~~~l~--~g~-ivv~~s-t~~~~~~~~~~~~~~~-~g~~~~  124 (303)
T 3g0o_A           74 NAAQVRQVLFGEDGVAHLMK--PGS-AVMVSS-TISSADAQEIAAALTA-LNLNML  124 (303)
T ss_dssp             SHHHHHHHHC--CCCGGGSC--TTC-EEEECS-CCCHHHHHHHHHHHHT-TTCEEE
T ss_pred             CHHHHHHHHhChhhHHhhCC--CCC-EEEecC-CCCHHHHHHHHHHHHH-cCCeEE
Confidence            976666554       2344  444 455543 4577888888888844 465543

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.41  E-value=4.2e-07  Score=82.56  Aligned_cols=114  Identities=18%  Similarity=0.228  Sum_probs=81.3

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      ...+|+|||+|.+|..++..+...  .+++-+.++|++++   ++++++++++..+..++++++++++  .|+|+++||.
T Consensus       134 ~~~~igiIG~G~~g~~~a~~l~~~--~g~~~V~v~dr~~~---~~~~l~~~~~~~~~~~~~~~e~v~~--aDiVi~atp~  206 (312)
T 2i99_A          134 SSEVLCILGAGVQAYSHYEIFTEQ--FSFKEVRIWNRTKE---NAEKFADTVQGEVRVCSSVQEAVAG--ADVIITVTLA  206 (312)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHH--CCCSEEEEECSSHH---HHHHHHHHSSSCCEECSSHHHHHTT--CSEEEECCCC
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHh--CCCcEEEEEcCCHH---HHHHHHHHhhCCeEEeCCHHHHHhc--CCEEEEEeCC
Confidence            357999999999999999998876  46756779999988   6777887776112367899999976  8999999995


Q ss_pred             CccHHHHH-HHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 017143           85 MTHYQILM-DIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVG  134 (376)
Q Consensus        85 ~~h~~~~~-~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~  134 (376)
                      . + +++. ..++  .|+||++-......   .+++.+.+.++ ++ .++.
T Consensus       207 ~-~-~v~~~~~l~--~g~~vi~~g~~~p~---~~el~~~~~~~-g~-~~vD  248 (312)
T 2i99_A          207 T-E-PILFGEWVK--PGAHINAVGASRPD---WRELDDELMKE-AV-LYVD  248 (312)
T ss_dssp             S-S-CCBCGGGSC--TTCEEEECCCCSTT---CCSBCHHHHHH-SE-EEES
T ss_pred             C-C-cccCHHHcC--CCcEEEeCCCCCCC---ceeccHHHHhc-CE-EEEC
Confidence            3 2 2222 5678  88999986544332   35555555344 54 3443

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=98.40  E-value=1.7e-06  Score=78.06  Aligned_cols=111  Identities=15%  Similarity=0.236  Sum_probs=78.7

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ++||+|||+|.+|..+...+.+.   +.+|+ ++|+++++.   +++.+ .|+  ..+++++++++   .|+|++++|+.
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~---G~~V~-~~dr~~~~~---~~~~~-~g~--~~~~~~~~~~~---aDvvi~~vp~~   81 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEW---PGGVT-VYDIRIEAM---TPLAE-AGA--TLADSVADVAA---ADLIHITVLDD   81 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTS---TTCEE-EECSSTTTS---HHHHH-TTC--EECSSHHHHTT---SSEEEECCSSH
T ss_pred             CCeEEEECcCHHHHHHHHHHHHC---CCeEE-EEeCCHHHH---HHHHH-CCC--EEcCCHHHHHh---CCEEEEECCCh
Confidence            57999999999999998888875   67765 679999843   34433 364  47889999986   79999999987


Q ss_pred             ccHHHHHHHH-cCC-CCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEE
Q 017143           86 THYQILMDII-NHP-KPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQ  132 (376)
Q Consensus        86 ~h~~~~~~al-~~~-~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~  132 (376)
                      .+.+.+.+.+ ..- .| .+++..- +..+...+++.+...++ ++.+.
T Consensus        82 ~~~~~v~~~l~~~l~~g-~ivv~~s-t~~~~~~~~~~~~~~~~-g~~~~  127 (296)
T 3qha_A           82 AQVREVVGELAGHAKPG-TVIAIHS-TISDTTAVELARDLKAR-DIHIV  127 (296)
T ss_dssp             HHHHHHHHHHHTTCCTT-CEEEECS-CCCHHHHHHHHHHHGGG-TCEEE
T ss_pred             HHHHHHHHHHHHhcCCC-CEEEEeC-CCCHHHHHHHHHHHHHc-CCEEE
Confidence            6655433332 210 34 4566654 56788888898888443 65544

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=98.38  E-value=5.2e-06  Score=74.77  Aligned_cols=113  Identities=20%  Similarity=0.204  Sum_probs=86.7

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      |-|||+||+|.||......|.+.   +++|+ |||++++   +++.+.+. |.  ...+|..|+.+.  .|+|++|.|+.
T Consensus         3 M~kIgfIGlG~MG~~mA~~L~~~---G~~v~-v~dr~~~---~~~~l~~~-Ga--~~a~s~~e~~~~--~dvv~~~l~~~   70 (300)
T 3obb_A            3 MKQIAFIGLGHMGAPMATNLLKA---GYLLN-VFDLVQS---AVDGLVAA-GA--SAARSARDAVQG--ADVVISMLPAS   70 (300)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHT---TCEEE-EECSSHH---HHHHHHHT-TC--EECSSHHHHHTT--CSEEEECCSCH
T ss_pred             cCEEEEeeehHHHHHHHHHHHhC---CCeEE-EEcCCHH---HHHHHHHc-CC--EEcCCHHHHHhc--CCceeecCCch
Confidence            34899999999999999888874   78866 7999998   56666543 64  478999999987  89999999998


Q ss_pred             ccHHHHHHH-------HcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEee
Q 017143           86 THYQILMDI-------INHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGL  135 (376)
Q Consensus        86 ~h~~~~~~a-------l~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~  135 (376)
                      .+.+-+...       ++  .| .++++-- +.+++.++++.+.+++ .|+.+.-+.
T Consensus        71 ~~v~~V~~~~~g~~~~~~--~g-~iiId~s-T~~p~~~~~~a~~~~~-~G~~~lDaP  122 (300)
T 3obb_A           71 QHVEGLYLDDDGLLAHIA--PG-TLVLECS-TIAPTSARKIHAAARE-RGLAMLDAP  122 (300)
T ss_dssp             HHHHHHHHSSSSSTTSCC--C--CEEEECS-CCCHHHHHHHHHHHHT-TTCEEEECC
T ss_pred             HHHHHHHhchhhhhhcCC--CC-CEEEECC-CCCHHHHHHHHHHHHH-cCCEEEecC
Confidence            877766542       23  23 4777755 6799999999999954 477665443

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=98.37  E-value=1.4e-07  Score=84.33  Aligned_cols=77  Identities=16%  Similarity=0.193  Sum_probs=54.4

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ++||+|||+|.||..+...+.+   . ++++.++|++++   ++++++++++.   .++++++++++  .|+|++++|++
T Consensus         2 ~m~I~iIG~G~mG~~la~~l~~---~-~~v~~v~~~~~~---~~~~~~~~~g~---~~~~~~~~~~~--~DvVilav~~~   69 (276)
T 2i76_A            2 SLVLNFVGTGTLTRFFLECLKD---R-YEIGYILSRSID---RARNLAEVYGG---KAATLEKHPEL--NGVVFVIVPDR   69 (276)
T ss_dssp             --CCEEESCCHHHHHHHHTTC--------CCCEECSSHH---HHHHHHHHTCC---CCCSSCCCCC-----CEEECSCTT
T ss_pred             CceEEEEeCCHHHHHHHHHHHH---c-CcEEEEEeCCHH---HHHHHHHHcCC---ccCCHHHHHhc--CCEEEEeCChH
Confidence            4689999999999998877754   3 677678999987   56666667674   56777777765  89999999999


Q ss_pred             ccHHHHHHH
Q 017143           86 THYQILMDI   94 (376)
Q Consensus        86 ~h~~~~~~a   94 (376)
                      .+.+++.+.
T Consensus        70 ~~~~v~~~l   78 (276)
T 2i76_A           70 YIKTVANHL   78 (276)
T ss_dssp             THHHHHTTT
T ss_pred             HHHHHHHHh
Confidence            987766543

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=98.35  E-value=6.7e-07  Score=82.60  Aligned_cols=144  Identities=15%  Similarity=0.175  Sum_probs=90.6

Q ss_pred             CCceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcC-------CCCCccCCHHHHhhCCCC
Q 017143            4 NDTVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFD-------WPLKVFPGHQELLDSGLC   75 (376)
Q Consensus         4 ~~~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~   75 (376)
                      |+++||+|+| +|.+|+.+++.|.+.  ++++++++.++...    .+++...++       .++ .+.+ ++.+.  ++
T Consensus        14 M~~~kV~IiGAtG~iG~~llr~L~~~--p~~elvai~~~~~~----g~~~~~~~~~~~~~v~~dl-~~~~-~~~~~--~v   83 (359)
T 1xyg_A           14 EKDIRIGLLGASGYTGAEIVRLLANH--PHFQVTLMTADRKA----GQSMESVFPHLRAQKLPTL-VSVK-DADFS--TV   83 (359)
T ss_dssp             -CCEEEEEECCSSHHHHHHHHHHHTC--SSEEEEEEBCSTTT----TSCHHHHCGGGTTSCCCCC-BCGG-GCCGG--GC
T ss_pred             ccCcEEEEECcCCHHHHHHHHHHHcC--CCcEEEEEeCchhc----CCCHHHhCchhcCcccccc-eecc-hhHhc--CC
Confidence            3468999999 899999999999887  89999999987533    222332222       011 1222 44443  49


Q ss_pred             CEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCC--C-HHH---------------------HHHHHHHHHhCCCeEE
Q 017143           76 DVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCT--T-VAD---------------------CKKVVDAARKRPDILV  131 (376)
Q Consensus        76 D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~--~-~~e---------------------~~~l~~~a~~~~~~~~  131 (376)
                      |+|+.|+|...|.+.+.++ +  +|..|+- -+.+.  + .+.                     .-|+-+..-+..  .+
T Consensus        84 DvVf~atp~~~s~~~a~~~-~--aG~~VId-~sa~~R~~~~~~y~~~y~~~~~~~~~l~~~vygvpE~n~~~i~~~--~i  157 (359)
T 1xyg_A           84 DAVFCCLPHGTTQEIIKEL-P--TALKIVD-LSADFRLRNIAEYEEWYGQPHKAVELQKEVVYGLTEILREDIKKA--RL  157 (359)
T ss_dssp             SEEEECCCTTTHHHHHHTS-C--TTCEEEE-CSSTTTCSCHHHHHHHHSSCCSCHHHHTTCEECCHHHHHHHHHTC--SE
T ss_pred             CEEEEcCCchhHHHHHHHH-h--CCCEEEE-CCccccCCchhhhhhhhcCCcCChhhcCCceEECCccCHHHhccC--CE
Confidence            9999999999999999999 8  7886544 33322  1 110                     111222111222  34


Q ss_pred             EEeeccccCHHHHHHHHHHHcCCCC--ceEEEEE
Q 017143          132 QVGLEYRYMPPVAKLIQIVKSGSIG--QVKMVAI  163 (376)
Q Consensus       132 ~v~~~~r~~p~~~~~k~~i~~g~iG--~i~~~~~  163 (376)
                      ..+-++.-......++-+.+.+.|.  ++..-..
T Consensus       158 IanpgC~tt~~~~~l~pL~~~~~i~~~~i~v~t~  191 (359)
T 1xyg_A          158 VANPGCYPTTIQLPLVPLLKANLIKHENIIIDAK  191 (359)
T ss_dssp             EECCCHHHHHHHHHHHHHHHTTCBCSSSCEEEEE
T ss_pred             EECCCcHHHHHHHHHHHHHHcCCCCCCeEEEEEE
Confidence            4555555566677788888888777  6654443

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=98.33  E-value=8.1e-06  Score=74.23  Aligned_cols=114  Identities=11%  Similarity=0.039  Sum_probs=80.4

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCC-cEEEEEeCCChh---hHH-HHHHHHHhcCCCCCccC-CHHHHhhCCCCCEEE
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQG-VSVVCIADPHLQ---SRQ-QALKLANAFDWPLKVFP-GHQELLDSGLCDVVV   79 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~-~~~~~v~d~~~~---~~~-~~~~~~~~~~~~~~~~~-~~~~~l~~~~~D~V~   79 (376)
                      ++||+|||+|.||......|.+.   + .+|+ ++|++++   +.+ ..+++ .+.|+    ++ +.++++++  .|+|+
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~---G~~~V~-~~dr~~~~~~~~~~~~~~~-~~~g~----~~~s~~e~~~~--aDvVi   92 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGR---NAARLA-AYDLRFNDPAASGALRARA-AELGV----EPLDDVAGIAC--ADVVL   92 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT---TCSEEE-EECGGGGCTTTHHHHHHHH-HHTTC----EEESSGGGGGG--CSEEE
T ss_pred             CCeEEEECccHHHHHHHHHHHHc---CCCeEE-EEeCCCccccchHHHHHHH-HHCCC----CCCCHHHHHhc--CCEEE
Confidence            47999999999999998888875   6 7766 7899872   111 22222 23453    56 78888876  89999


Q ss_pred             EeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEE
Q 017143           80 VSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQ  132 (376)
Q Consensus        80 i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~  132 (376)
                      +++|+....+.+...+..-....+++..- +..+...+++.+...+ .++.+.
T Consensus        93 ~avp~~~~~~~~~~i~~~l~~~~ivv~~s-t~~p~~~~~~~~~l~~-~g~~~~  143 (317)
T 4ezb_A           93 SLVVGAATKAVAASAAPHLSDEAVFIDLN-SVGPDTKALAAGAIAT-GKGSFV  143 (317)
T ss_dssp             ECCCGGGHHHHHHHHGGGCCTTCEEEECC-SCCHHHHHHHHHHHHT-SSCEEE
T ss_pred             EecCCHHHHHHHHHHHhhcCCCCEEEECC-CCCHHHHHHHHHHHHH-cCCeEE
Confidence            99999988887765543111235677765 6788888999888844 465543

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=98.33  E-value=2.1e-06  Score=77.32  Aligned_cols=114  Identities=13%  Similarity=0.132  Sum_probs=80.5

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      -|||+||+|.||......|.+.   +++|+ +||++++   +++++.+ .|.  ...+|..++.+.  .|+|+++.|+..
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~---G~~V~-v~dr~~~---~~~~l~~-~G~--~~~~s~~e~~~~--~dvvi~~l~~~~   73 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEA---GYELV-VWNRTAS---KAEPLTK-LGA--TVVENAIDAITP--GGIVFSVLADDA   73 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT---TCEEE-EC----------CTTTT-TTC--EECSSGGGGCCT--TCEEEECCSSHH
T ss_pred             CcEEEEecHHHHHHHHHHHHHC---CCeEE-EEeCCHH---HHHHHHH-cCC--eEeCCHHHHHhc--CCceeeeccchh
Confidence            4899999999999999888885   88876 7999988   4545443 464  478899999986  899999999977


Q ss_pred             cHHH-----HHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeecc
Q 017143           87 HYQI-----LMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEY  137 (376)
Q Consensus        87 h~~~-----~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~  137 (376)
                      +.+-     +...+.  .| .|+++-- +.+++..+++.+.+.++ |+.+.-+...
T Consensus        74 ~~~~v~~~~~~~~~~--~~-~iiid~s-T~~p~~~~~~~~~~~~~-g~~~ldapVs  124 (297)
T 4gbj_A           74 AVEELFSMELVEKLG--KD-GVHVSMS-TISPETSRQLAQVHEWY-GAHYVGAPIF  124 (297)
T ss_dssp             HHHHHSCHHHHHHHC--TT-CEEEECS-CCCHHHHHHHHHHHHHT-TCEEEECCEE
T ss_pred             hHHHHHHHHHHhhcC--CC-eEEEECC-CCChHHHHHHHHHHHhc-CCceecCCcC
Confidence            6543     233455  44 4777765 67899999999999555 7666655444

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=98.32  E-value=4.3e-07  Score=83.93  Aligned_cols=147  Identities=15%  Similarity=0.228  Sum_probs=90.7

Q ss_pred             ceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeC-CChhhHHHHHHHHHhcCC-----------CCCcc-CCHHHHhh
Q 017143            6 TVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIAD-PHLQSRQQALKLANAFDW-----------PLKVF-PGHQELLD   71 (376)
Q Consensus         6 ~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d-~~~~~~~~~~~~~~~~~~-----------~~~~~-~~~~~~l~   71 (376)
                      ++||+|+| +|.+|+.+++.|..+  ++++|+++++ +...    .+.+.+.++.           +.... .+.+++++
T Consensus         8 ~~kV~IiGAtG~iG~~llr~L~~~--p~~ev~~i~~s~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (354)
T 1ys4_A            8 KIKVGVLGATGSVGQRFVQLLADH--PMFELTALAASERSA----GKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEF   81 (354)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTC--SSEEEEEEEECTTTT----TSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGG
T ss_pred             cceEEEECcCCHHHHHHHHHHhcC--CCCEEEEEEcccccc----cccHHHhcccccccccccCceeeEEEeCCHHHHhc
Confidence            48999999 899999999999887  8999999984 3221    1112222221           11111 14555544


Q ss_pred             CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCC--------CCHHHH----HHHHHHHHh-CC-CeEEEEeecc
Q 017143           72 SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLC--------TTVADC----KKVVDAARK-RP-DILVQVGLEY  137 (376)
Q Consensus        72 ~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a--------~~~~e~----~~l~~~a~~-~~-~~~~~v~~~~  137 (376)
                       .++|+|+.|+|+..|.+.+.++++  +|+.|+.- |..        .-+.|.    ..+.+..++ .+ +..+..+-++
T Consensus        82 -~~~DvV~~atp~~~~~~~a~~~~~--aG~~VId~-s~~~R~~~~~~~~vpevn~~~~~~~e~~r~~~~~~~~iIanpgC  157 (354)
T 1ys4_A           82 -EDVDIVFSALPSDLAKKFEPEFAK--EGKLIFSN-ASAYRMEEDVPLVIPEVNADHLELIEIQREKRGWDGAIITNPNC  157 (354)
T ss_dssp             -TTCCEEEECCCHHHHHHHHHHHHH--TTCEEEEC-CSTTTTCTTSCBCCHHHHGGGGGHHHHHHHHHCCSSEEEECCCH
T ss_pred             -CCCCEEEECCCchHHHHHHHHHHH--CCCEEEEC-CchhcCCCCCCccCcccCHHHhcChhhhhhhcccCCeEEECCCH
Confidence             259999999999999999999999  88886653 222        111111    122222221 11 2245566666


Q ss_pred             ccCHHHHHHHHHHHc-CCCCceEEEEE
Q 017143          138 RYMPPVAKLIQIVKS-GSIGQVKMVAI  163 (376)
Q Consensus       138 r~~p~~~~~k~~i~~-g~iG~i~~~~~  163 (376)
                      -.......++-+.+. | |.++.....
T Consensus       158 ~tt~~~l~l~pL~~~~g-i~~~~v~t~  183 (354)
T 1ys4_A          158 STICAVITLKPIMDKFG-LEAVFIATM  183 (354)
T ss_dssp             HHHHHHHHHHHHHHHHC-CSEEEEEEE
T ss_pred             HHHHHHHHHHHHHHhcC-CcEEEEEEE
Confidence            666677777777774 6 666654444

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=98.31  E-value=6.1e-06  Score=72.96  Aligned_cols=104  Identities=14%  Similarity=0.134  Sum_probs=77.1

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCC--ChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADP--HLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      +||+|||+|.||..+...|.+.   +.+|+. +|+  +++   ..+++.+ .|+  .  ++.++++.+  .|+|++++|+
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~---g~~V~~-~~~~~~~~---~~~~~~~-~g~--~--~~~~~~~~~--aDvvi~~v~~   66 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSR---GVEVVT-SLEGRSPS---TIERART-VGV--T--ETSEEDVYS--CPVVISAVTP   66 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHT---TCEEEE-CCTTCCHH---HHHHHHH-HTC--E--ECCHHHHHT--SSEEEECSCG
T ss_pred             CeEEEEechHHHHHHHHHHHHC---CCeEEE-eCCccCHH---HHHHHHH-CCC--c--CCHHHHHhc--CCEEEEECCC
Confidence            4899999999999998888775   678765 787  544   3344433 364  2  678888876  8999999999


Q ss_pred             CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCC
Q 017143           85 MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPD  128 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~  128 (376)
                      +.+.+.+...+.  ..++++++. -+.+....++|.+.. ...+
T Consensus        67 ~~~~~~~~~~~~--~~~~~vi~~-s~~~~~~~~~l~~~~-~~~g  106 (264)
T 1i36_A           67 GVALGAARRAGR--HVRGIYVDI-NNISPETVRMASSLI-EKGG  106 (264)
T ss_dssp             GGHHHHHHHHHT--TCCSEEEEC-SCCCHHHHHHHHHHC-SSSE
T ss_pred             HHHHHHHHHHHH--hcCcEEEEc-cCCCHHHHHHHHHHH-hhCC
Confidence            988888766665  333388988 467778888888887 4434

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=98.29  E-value=3.4e-06  Score=75.64  Aligned_cols=110  Identities=15%  Similarity=0.216  Sum_probs=79.3

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      +||+|||+|.||......+.+.   +.+|+ ++|+++++.+   ++.+ .|+  ..+++.++++++  .|+|++++|+..
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~---G~~V~-~~dr~~~~~~---~~~~-~g~--~~~~~~~~~~~~--advvi~~v~~~~   69 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRA---GFDVT-VWNRNPAKCA---PLVA-LGA--RQASSPAEVCAA--CDITIAMLADPA   69 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHH---TCCEE-EECSSGGGGH---HHHH-HTC--EECSCHHHHHHH--CSEEEECCSSHH
T ss_pred             CeEEEEccCHHHHHHHHHHHHC---CCeEE-EEcCCHHHHH---HHHH-CCC--eecCCHHHHHHc--CCEEEEEcCCHH
Confidence            5899999999999999888876   66755 6899998543   4333 264  477899999987  799999999876


Q ss_pred             cHHHHH---H----HHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 017143           87 HYQILM---D----IINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQV  133 (376)
Q Consensus        87 h~~~~~---~----al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v  133 (376)
                      +.+.+.   +    .++  .| .+++..- +.++...+++.+...+. ++.+..
T Consensus        70 ~~~~v~~~~~~l~~~l~--~g-~~vv~~s-t~~~~~~~~~~~~~~~~-g~~~~~  118 (287)
T 3pdu_A           70 AAREVCFGANGVLEGIG--GG-RGYIDMS-TVDDETSTAIGAAVTAR-GGRFLE  118 (287)
T ss_dssp             HHHHHHHSTTCGGGTCC--TT-CEEEECS-CCCHHHHHHHHHHHHHT-TCEEEE
T ss_pred             HHHHHHcCchhhhhccc--CC-CEEEECC-CCCHHHHHHHHHHHHHc-CCEEEE
Confidence            655544   2    234  44 4556554 45788888888888554 655443

>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}

Probab=98.26  E-value=1.8e-06  Score=68.61  Aligned_cols=93  Identities=15%  Similarity=0.126  Sum_probs=68.7

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      +++.++.|||+|..|..++..+.+.  ++++++|++|.++....  .   .-.|+++...+++.+++....+|.|+|+.|
T Consensus         2 ~~~~~vlIiGaG~~g~~l~~~l~~~--~g~~vvg~~d~~~~~~g--~---~i~g~pV~g~~~l~~~~~~~~id~viia~~   74 (141)
T 3nkl_A            2 NAKKKVLIYGAGSAGLQLANMLRQG--KEFHPIAFIDDDRKKHK--T---TMQGITIYRPKYLERLIKKHCISTVLLAVP   74 (141)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHS--SSEEEEEEECSCGGGTT--C---EETTEEEECGGGHHHHHHHHTCCEEEECCT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhC--CCcEEEEEEECCcccCC--C---EecCeEEECHHHHHHHHHHCCCCEEEEeCC
Confidence            4568999999999999998888876  69999999998875211  0   113555212456777777667999999999


Q ss_pred             CCcc---HHHHHHHHcCCCCCeEEE
Q 017143           84 NMTH---YQILMDIINHPKPHHVLV  105 (376)
Q Consensus        84 ~~~h---~~~~~~al~~~~g~~Vl~  105 (376)
                      ...+   .+++..+.+  .|..|.+
T Consensus        75 ~~~~~~~~~i~~~l~~--~gv~v~~   97 (141)
T 3nkl_A           75 SASQVQKKVIIESLAK--LHVEVLT   97 (141)
T ss_dssp             TSCHHHHHHHHHHHHT--TTCEEEE
T ss_pred             CCCHHHHHHHHHHHHH--cCCeEEE
Confidence            7666   566777778  7888764

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=98.25  E-value=6.5e-06  Score=74.84  Aligned_cols=111  Identities=14%  Similarity=0.190  Sum_probs=76.8

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ++||+|||+|.+|..+...+...   +.+| .++|+++++.+   ++.+ .|+  ..+++.++++++  .|+|++++|+.
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~---g~~V-~~~~~~~~~~~---~~~~-~g~--~~~~~~~~~~~~--~DvVi~av~~~   97 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKM---GHTV-TVWNRTAEKCD---LFIQ-EGA--RLGRTPAEVVST--CDITFACVSDP   97 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHT---TCCE-EEECSSGGGGH---HHHH-TTC--EECSCHHHHHHH--CSEEEECCSSH
T ss_pred             CCeEEEEcccHHHHHHHHHHHhC---CCEE-EEEeCCHHHHH---HHHH-cCC--EEcCCHHHHHhc--CCEEEEeCCCH
Confidence            47999999999999998888775   5675 57899988543   3333 464  367889898876  89999999976


Q ss_pred             ccHHHHHH-------HHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 017143           86 THYQILMD-------IINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQV  133 (376)
Q Consensus        86 ~h~~~~~~-------al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v  133 (376)
                      .+.+.+..       .+.  .|+.|+ ..- ..+....++|.+...+. ++.+..
T Consensus        98 ~~~~~v~~~~~~~~~~l~--~~~~vv-~~s-~~~~~~~~~l~~~~~~~-~~~~v~  147 (316)
T 2uyy_A           98 KAAKDLVLGPSGVLQGIR--PGKCYV-DMS-TVDADTVTELAQVIVSR-GGRFLE  147 (316)
T ss_dssp             HHHHHHHHSTTCGGGGCC--TTCEEE-ECS-CCCHHHHHHHHHHHHHT-TCEEEE
T ss_pred             HHHHHHHcCchhHhhcCC--CCCEEE-ECC-CCCHHHHHHHHHHHHHc-CCEEEE
Confidence            66655543       244  555554 322 34566777788777443 555443

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=98.22  E-value=1.1e-05  Score=73.19  Aligned_cols=106  Identities=16%  Similarity=0.073  Sum_probs=69.8

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCc--EEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHH-HhhCCCCCEEEEeC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGV--SVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQE-LLDSGLCDVVVVST   82 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~--~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~D~V~i~t   82 (376)
                      .+||+|||+|.||......+.+.   +.  +|+ ++|+++++.+.+    .+.|+....++++++ ++++  .|+|++|+
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~---G~~~~V~-~~dr~~~~~~~a----~~~G~~~~~~~~~~~~~~~~--aDvVilav  102 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRS---GFKGKIY-GYDINPESISKA----VDLGIIDEGTTSIAKVEDFS--PDFVMLSS  102 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHT---TCCSEEE-EECSCHHHHHHH----HHTTSCSEEESCTTGGGGGC--CSEEEECS
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhC---CCCCEEE-EEECCHHHHHHH----HHCCCcchhcCCHHHHhhcc--CCEEEEeC
Confidence            47999999999999999888875   55  655 689998744332    345642135678888 7766  89999999


Q ss_pred             CCCccHHHHHHHHcCC-CCCeEEEecCCCCCHHHHHHHHHHH
Q 017143           83 PNMTHYQILMDIINHP-KPHHVLVEKPLCTTVADCKKVVDAA  123 (376)
Q Consensus        83 ~~~~h~~~~~~al~~~-~g~~Vl~EKP~a~~~~e~~~l~~~a  123 (376)
                      |+..-.+++.+....- .| .+++.-- +......+.+.+..
T Consensus       103 p~~~~~~vl~~l~~~l~~~-~iv~d~~-Svk~~~~~~~~~~l  142 (314)
T 3ggo_A          103 PVRTFREIAKKLSYILSED-ATVTDQG-SVKGKLVYDLENIL  142 (314)
T ss_dssp             CGGGHHHHHHHHHHHSCTT-CEEEECC-SCCTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhhccCCC-cEEEECC-CCcHHHHHHHHHhc
Confidence            9987666655443210 33 4666642 22333344555444

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=98.19  E-value=6.1e-06  Score=73.90  Aligned_cols=107  Identities=11%  Similarity=0.118  Sum_probs=73.2

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      +||+|||+|.+|..+...+..    +.+| .++|+++++   ++++.+. |+.  .++ +++++.+  .|+|++|+|+..
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~----g~~V-~~~~~~~~~---~~~~~~~-g~~--~~~-~~~~~~~--~D~vi~~v~~~~   67 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR----RFPT-LVWNRTFEK---ALRHQEE-FGS--EAV-PLERVAE--ARVIFTCLPTTR   67 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT----TSCE-EEECSSTHH---HHHHHHH-HCC--EEC-CGGGGGG--CSEEEECCSSHH
T ss_pred             CeEEEEcccHHHHHHHHHHhC----CCeE-EEEeCCHHH---HHHHHHC-CCc--ccC-HHHHHhC--CCEEEEeCCChH
Confidence            589999999999998887765    3454 478999884   4444433 543  445 7777765  899999999887


Q ss_pred             cHHHHHHH----HcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEE
Q 017143           87 HYQILMDI----INHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQ  132 (376)
Q Consensus        87 h~~~~~~a----l~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~  132 (376)
                      |.+.+.+.    ++  .|+.|+..-  .......++|.+.+ ...++.+.
T Consensus        68 ~~~~v~~~l~~~l~--~~~~vv~~s--~~~~~~~~~l~~~~-~~~g~~~~  112 (289)
T 2cvz_A           68 EVYEVAEALYPYLR--EGTYWVDAT--SGEPEASRRLAERL-REKGVTYL  112 (289)
T ss_dssp             HHHHHHHHHTTTCC--TTEEEEECS--CCCHHHHHHHHHHH-HTTTEEEE
T ss_pred             HHHHHHHHHHhhCC--CCCEEEECC--CCCHHHHHHHHHHH-HHcCCEEE
Confidence            76655433    34  466665542  34667778888888 44465544

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=98.19  E-value=2.3e-05  Score=74.98  Aligned_cols=115  Identities=10%  Similarity=0.184  Sum_probs=78.9

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc--CCCCCccCCHHHHhhC-CCCCEEEEe
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF--DWPLKVFPGHQELLDS-GLCDVVVVS   81 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~-~~~D~V~i~   81 (376)
                      .+++|||||+|.||......+.+.   +++|+ ++|++++   +++++.++.  +..+..+.+++++++. .++|+|+++
T Consensus         3 ~~~kIgiIGlG~MG~~lA~~L~~~---G~~V~-v~dr~~~---~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~   75 (484)
T 4gwg_A            3 AQADIALIGLAVMGQNLILNMNDH---GFVVC-AFNRTVS---KVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILL   75 (484)
T ss_dssp             CCBSEEEECCSHHHHHHHHHHHHT---TCCEE-EECSSTH---HHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEEC
T ss_pred             CCCEEEEEChhHHHHHHHHHHHHC---CCEEE-EEeCCHH---HHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEe
Confidence            468999999999999999888875   67765 7899998   455555442  3222346899999874 348999999


Q ss_pred             CCCCccHHHHHHH----HcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEE
Q 017143           82 TPNMTHYQILMDI----INHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILV  131 (376)
Q Consensus        82 t~~~~h~~~~~~a----l~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~  131 (376)
                      +|+..+.+-+.+.    ++  .| .+++..- .....+..++.+...++ |+.+
T Consensus        76 Vp~~~~v~~vl~~l~~~L~--~g-~iIId~s-t~~~~~t~~~~~~l~~~-Gi~f  124 (484)
T 4gwg_A           76 VKAGQAVDDFIEKLVPLLD--TG-DIIIDGG-NSEYRDTTRRCRDLKAK-GILF  124 (484)
T ss_dssp             SCSSHHHHHHHHHHGGGCC--TT-CEEEECS-CCCHHHHHHHHHHHHHT-TCEE
T ss_pred             cCChHHHHHHHHHHHHhcC--CC-CEEEEcC-CCCchHHHHHHHHHHhh-cccc
Confidence            9997655444333    33  34 4666643 34566777777777454 6543

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=98.19  E-value=1.8e-05  Score=76.10  Aligned_cols=113  Identities=15%  Similarity=0.235  Sum_probs=77.8

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCC----C-CCccCCHHHHhhC-CCCCEEEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDW----P-LKVFPGHQELLDS-GLCDVVVV   80 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~l~~-~~~D~V~i   80 (376)
                      +||+|||+|.||..+...+.+.   +.+| .++|++++   +++++.+++|.    . +..+.+++++++. .++|+|++
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~---G~~V-~v~dr~~~---~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVil   74 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEK---GFKV-AVFNRTYS---KSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALI   74 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT---TCCE-EEECSSHH---HHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEE
T ss_pred             CEEEEEChHHHHHHHHHHHHHC---CCEE-EEEeCCHH---HHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEE
Confidence            5899999999999999888875   6675 58899988   45566655551    0 2367899998874 24899999


Q ss_pred             eCCCCccHHHHHH----HHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEE
Q 017143           81 STPNMTHYQILMD----IINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILV  131 (376)
Q Consensus        81 ~t~~~~h~~~~~~----al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~  131 (376)
                      ++|+..+.+.+.+    .++  .|+ +++.. ......+..++.+...+ .++.+
T Consensus        75 aVp~~~~v~~vl~~l~~~l~--~g~-iIId~-sng~~~~~~~l~~~l~~-~g~~~  124 (478)
T 1pgj_A           75 LVQAGAATDSTIEQLKKVFE--KGD-ILVDT-GNAHFKDQGRRAQQLEA-AGLRF  124 (478)
T ss_dssp             CCCCSHHHHHHHHHHHHHCC--TTC-EEEEC-CCCCHHHHHHHHHHHHT-TTCEE
T ss_pred             ecCChHHHHHHHHHHHhhCC--CCC-EEEEC-CCCChHHHHHHHHHHHH-CCCeE
Confidence            9999866554443    345  454 55553 23345567777777733 36543

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=98.17  E-value=4.5e-06  Score=73.77  Aligned_cols=99  Identities=15%  Similarity=0.125  Sum_probs=67.5

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCC-cEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQG-VSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~-~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      +||+|||+|.||..+...+.+.   + .++ .++|++++   +++++.+++|+.  .+++.++++ +  .|+|++++| .
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~---g~~~v-~~~~r~~~---~~~~~~~~~g~~--~~~~~~~~~-~--~D~vi~~v~-~   67 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQ---GGYRI-YIANRGAE---KRERLEKELGVE--TSATLPELH-S--DDVLILAVK-P   67 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH---CSCEE-EEECSSHH---HHHHHHHHTCCE--EESSCCCCC-T--TSEEEECSC-H
T ss_pred             CEEEEECchHHHHHHHHHHHHC---CCCeE-EEECCCHH---HHHHHHHhcCCE--EeCCHHHHh-c--CCEEEEEeC-c
Confidence            4899999999999999888875   4 554 57899987   566666677864  677777777 4  899999999 4


Q ss_pred             ccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHH
Q 017143           86 THYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAA  123 (376)
Q Consensus        86 ~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a  123 (376)
                      .+..-+.+.+.. . ..+++.---+.+.   ..|.+..
T Consensus        68 ~~~~~v~~~l~~-~-~~ivv~~~~g~~~---~~l~~~~  100 (263)
T 1yqg_A           68 QDMEAACKNIRT-N-GALVLSVAAGLSV---GTLSRYL  100 (263)
T ss_dssp             HHHHHHHTTCCC-T-TCEEEECCTTCCH---HHHHHHT
T ss_pred             hhHHHHHHHhcc-C-CCEEEEecCCCCH---HHHHHHc
Confidence            444444444441 2 3466665344454   3344444

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=98.17  E-value=1.4e-05  Score=71.12  Aligned_cols=103  Identities=15%  Similarity=0.185  Sum_probs=70.0

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      +||+|||+|.||..+...+.+.   +.+|+ ++|+++++   ++.+. ++|+....+++++++ .  +.|+|++++|++.
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~---g~~V~-~~~~~~~~---~~~~~-~~g~~~~~~~~~~~~-~--~~D~vi~av~~~~   69 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRR---GHYLI-GVSRQQST---CEKAV-ERQLVDEAGQDLSLL-Q--TAKIIFLCTPIQL   69 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCEEE-EECSCHHH---HHHHH-HTTSCSEEESCGGGG-T--TCSEEEECSCHHH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHC---CCEEE-EEECCHHH---HHHHH-hCCCCccccCCHHHh-C--CCCEEEEECCHHH
Confidence            4899999999999998888775   56755 57999874   44443 456532356788887 4  4899999999987


Q ss_pred             cHHHHHHHHcCC-CCCeEEEecCCCCCHHHHHHHHHH
Q 017143           87 HYQILMDIINHP-KPHHVLVEKPLCTTVADCKKVVDA  122 (376)
Q Consensus        87 h~~~~~~al~~~-~g~~Vl~EKP~a~~~~e~~~l~~~  122 (376)
                      +.+++.+....- .+. +++.- .+.+....+.+.+.
T Consensus        70 ~~~~~~~l~~~~~~~~-~vv~~-~~~~~~~~~~~~~~  104 (279)
T 2f1k_A           70 ILPTLEKLIPHLSPTA-IVTDV-ASVKTAIAEPASQL  104 (279)
T ss_dssp             HHHHHHHHGGGSCTTC-EEEEC-CSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCCC-EEEEC-CCCcHHHHHHHHHH
Confidence            777776553310 344 45553 44566555555443

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=98.14  E-value=2.5e-06  Score=77.21  Aligned_cols=92  Identities=18%  Similarity=0.282  Sum_probs=69.6

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      ..-+++|||+|.+|..|+..+...  ..++-+.|++++ ...+.++++.+++|+++..+ ++++++.+  .|+|+.|||.
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~--~~~~~V~v~~r~-~a~~la~~l~~~~g~~~~~~-~~~eav~~--aDIVi~aT~s  193 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSAR--FALEAILVHDPY-ASPEILERIGRRCGVPARMA-APADIAAQ--ADIVVTATRS  193 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHH--SCCCEEEEECTT-CCHHHHHHHHHHHTSCEEEC-CHHHHHHH--CSEEEECCCC
T ss_pred             CCcEEEEECccHHHHHHHHHHHHh--CCCcEEEEECCc-HHHHHHHHHHHhcCCeEEEe-CHHHHHhh--CCEEEEccCC
Confidence            346899999999999999999876  357777799999 43334455666678764456 99999987  8999999997


Q ss_pred             CccHHHH-HHHHcCCCCCeEEEe
Q 017143           85 MTHYQIL-MDIINHPKPHHVLVE  106 (376)
Q Consensus        85 ~~h~~~~-~~al~~~~g~~Vl~E  106 (376)
                      ..  +++ ...++  .|.||.+=
T Consensus       194 ~~--pvl~~~~l~--~G~~V~~v  212 (313)
T 3hdj_A          194 TT--PLFAGQALR--AGAFVGAI  212 (313)
T ss_dssp             SS--CSSCGGGCC--TTCEEEEC
T ss_pred             CC--cccCHHHcC--CCcEEEEC
Confidence            53  222 24578  88999875

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=98.14  E-value=2.3e-06  Score=76.23  Aligned_cols=121  Identities=23%  Similarity=0.318  Sum_probs=82.9

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ..+++|||+|.+|+.++..+...   +++ +.+++++++   +++++++++++.  .++++++++++  .|+|+++||..
T Consensus       129 ~~~v~iiGaG~~g~aia~~L~~~---g~~-V~v~~r~~~---~~~~l~~~~g~~--~~~~~~~~~~~--aDiVi~atp~~  197 (275)
T 2hk9_A          129 EKSILVLGAGGASRAVIYALVKE---GAK-VFLWNRTKE---KAIKLAQKFPLE--VVNSPEEVIDK--VQVIVNTTSVG  197 (275)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHH---TCE-EEEECSSHH---HHHHHTTTSCEE--ECSCGGGTGGG--CSEEEECSSTT
T ss_pred             CCEEEEECchHHHHHHHHHHHHc---CCE-EEEEECCHH---HHHHHHHHcCCe--eehhHHhhhcC--CCEEEEeCCCC
Confidence            46899999999999999998887   455 558999987   677888887754  66688888875  89999999998


Q ss_pred             ccHH---HH-HHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHH
Q 017143           86 THYQ---IL-MDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKL  146 (376)
Q Consensus        86 ~h~~---~~-~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~  146 (376)
                      .+..   .+ ...++  .|..| ++  ++.   ...++.+.++++ |+.++.|............
T Consensus       198 ~~~~~~~~i~~~~l~--~g~~v-iD--v~~---~~t~ll~~a~~~-g~~~v~g~~mlv~q~~~a~  253 (275)
T 2hk9_A          198 LKDEDPEIFNYDLIK--KDHVV-VD--IIY---KETKLLKKAKEK-GAKLLDGLPMLLWQGIEAF  253 (275)
T ss_dssp             SSTTCCCSSCGGGCC--TTSEE-EE--SSS---SCCHHHHHHHHT-TCEEECSHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHcC--CCCEE-EE--cCC---ChHHHHHHHHHC-cCEEECCHHHHHHHHHHHH
Confidence            7642   12 24466  56554 44  222   334466677454 7787777544443333333

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=98.13  E-value=3e-05  Score=74.44  Aligned_cols=117  Identities=14%  Similarity=0.162  Sum_probs=77.7

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc---CCCCCccCCHHHHhhC-CCCCEEE
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF---DWPLKVFPGHQELLDS-GLCDVVV   79 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~-~~~D~V~   79 (376)
                      |++.+|+|||+|.||......+.+.   +++|+ +++++++   +++++.+++   |+  ..++|++++++. .++|+|+
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~La~~---G~~V~-v~~r~~~---~~~~l~~~~~~~gi--~~~~s~~e~v~~l~~aDvVi   83 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNIESR---GYTVS-IFNRSRE---KTEEVIAENPGKKL--VPYYTVKEFVESLETPRRIL   83 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHTT---TCCEE-EECSSHH---HHHHHHHHSTTSCE--EECSSHHHHHHTBCSSCEEE
T ss_pred             cCCCeEEEEccHHHHHHHHHHHHhC---CCeEE-EEeCCHH---HHHHHHhhCCCCCe--EEeCCHHHHHhCCCCCCEEE
Confidence            4578999999999999998888875   67754 7899988   455666554   54  467899998875 3489999


Q ss_pred             EeCCCCccHHHHHHHH-cCC-CCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEE
Q 017143           80 VSTPNMTHYQILMDII-NHP-KPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQ  132 (376)
Q Consensus        80 i~t~~~~h~~~~~~al-~~~-~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~  132 (376)
                      +++|+....+-+++.+ ..- .|. +++.- ......+..++.+...++ ++.+.
T Consensus        84 l~Vp~~~~v~~vl~~l~~~l~~g~-iIId~-s~g~~~~t~~l~~~l~~~-g~~~v  135 (480)
T 2zyd_A           84 LMVKAGAGTDAAIDSLKPYLDKGD-IIIDG-GNTFFQDTIRRNRELSAE-GFNFI  135 (480)
T ss_dssp             ECSCSSSHHHHHHHHHGGGCCTTC-EEEEC-SCCCHHHHHHHHHHHHHT-TCEEE
T ss_pred             EECCCHHHHHHHHHHHHhhcCCCC-EEEEC-CCCCHHHHHHHHHHHHHC-CCCee
Confidence            9999975544444332 210 343 55542 233455666777766444 55443

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=98.13  E-value=2.6e-05  Score=75.03  Aligned_cols=113  Identities=11%  Similarity=0.221  Sum_probs=77.4

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH-h---cCCCCCccCCHHHHhhC-CCCCEEEE
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN-A---FDWPLKVFPGHQELLDS-GLCDVVVV   80 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~l~~-~~~D~V~i   80 (376)
                      ++||+|||+|.||..+...+.+.   +++| .++|++++   +++++.+ +   .|+  ..+.+++++++. .++|+|++
T Consensus         2 ~m~IgvIG~G~mG~~lA~~La~~---G~~V-~v~dr~~~---~~~~l~~~~~~g~gi--~~~~~~~e~v~~l~~aDvVil   72 (482)
T 2pgd_A            2 QADIALIGLAVMGQNLILNMNDH---GFVV-CAFNRTVS---KVDDFLANEAKGTKV--LGAHSLEEMVSKLKKPRRIIL   72 (482)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHT---TCCE-EEECSSTH---HHHHHHHTTTTTSSC--EECSSHHHHHHHBCSSCEEEE
T ss_pred             CCeEEEEChHHHHHHHHHHHHHC---CCeE-EEEeCCHH---HHHHHHhccccCCCe--EEeCCHHHHHhhccCCCEEEE
Confidence            36899999999999999888875   6775 57899988   4555554 2   354  467899999862 24899999


Q ss_pred             eCCCCccHHHHHH----HHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEE
Q 017143           81 STPNMTHYQILMD----IINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQ  132 (376)
Q Consensus        81 ~t~~~~h~~~~~~----al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~  132 (376)
                      ++|+..+.+.+.+    .++  .|+ +++.. ......+..++.+...+. ++.+.
T Consensus        73 aVp~~~~v~~vl~~l~~~l~--~g~-iII~~-s~~~~~~~~~l~~~l~~~-g~~~v  123 (482)
T 2pgd_A           73 LVKAGQAVDNFIEKLVPLLD--IGD-IIIDG-GNSEYRDTMRRCRDLKDK-GILFV  123 (482)
T ss_dssp             CSCTTHHHHHHHHHHHHHCC--TTC-EEEEC-SCCCHHHHHHHHHHHHHT-TCEEE
T ss_pred             eCCChHHHHHHHHHHHhhcC--CCC-EEEEC-CCCCHHHHHHHHHHHHHc-CCeEe
Confidence            9999866555443    345  455 55552 233455666777766443 65443

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=98.12  E-value=4.7e-06  Score=76.51  Aligned_cols=133  Identities=23%  Similarity=0.242  Sum_probs=84.6

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      .++|+|||+|.+|..+...+...   +++++ +++++++   +..+.+.++|+.  .+ +.++++.+  .|+|++++|+.
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~~---G~~V~-~~~~~~~---~~~~~a~~~G~~--~~-~~~e~~~~--aDvVilavp~~   83 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKDS---GVDVT-VGLRSGS---ATVAKAEAHGLK--VA-DVKTAVAA--ADVVMILTPDE   83 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHT---TCCEE-EECCTTC---HHHHHHHHTTCE--EE-CHHHHHHT--CSEEEECSCHH
T ss_pred             CCEEEEECchHHHHHHHHHHHHC---cCEEE-EEECChH---HHHHHHHHCCCE--Ec-cHHHHHhc--CCEEEEeCCcH
Confidence            46899999999999999988875   56765 6888776   334455667864  55 88888876  89999999999


Q ss_pred             ccHHHHH-HH---HcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEE
Q 017143           86 THYQILM-DI---INHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMV  161 (376)
Q Consensus        86 ~h~~~~~-~a---l~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~  161 (376)
                      .+.+++. +.   ++  .|..|..-+.    ..-   .........++.+...+.  ..| ....+++.+.| .|....+
T Consensus        84 ~~~~v~~~~i~~~l~--~~~ivi~~~g----v~~---~~~~~~~~~~~~vv~~~P--~gp-~~a~~~l~~~G-~g~~~ii  150 (338)
T 1np3_A           84 FQGRLYKEEIEPNLK--KGATLAFAHG----FSI---HYNQVVPRADLDVIMIAP--KAP-GHTVRSEFVKG-GGIPDLI  150 (338)
T ss_dssp             HHHHHHHHHTGGGCC--TTCEEEESCC----HHH---HTTSSCCCTTCEEEEEEE--SSC-SHHHHHHHHTT-CCCCEEE
T ss_pred             HHHHHHHHHHHhhCC--CCCEEEEcCC----chh---HHHhhcCCCCcEEEeccC--CCC-chhHHHHHhcc-CCCeEEE
Confidence            8877776 43   44  5665654432    221   112221123555555555  223 23345555544 3665554


Q ss_pred             EE
Q 017143          162 AI  163 (376)
Q Consensus       162 ~~  163 (376)
                      ..
T Consensus       151 ~~  152 (338)
T 1np3_A          151 AI  152 (338)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.10  E-value=1.9e-05  Score=75.26  Aligned_cols=71  Identities=14%  Similarity=0.250  Sum_probs=53.2

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc-----------------CCCCCccCCHHHH
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF-----------------DWPLKVFPGHQEL   69 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~   69 (376)
                      +||+|||+|.+|......+++.   +.+|+ ++|+++++.+   ++.+..                 .-.+..++|++++
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~---G~~V~-~~D~~~~~v~---~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea   75 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAEL---GANVR-CIDTDRNKIE---QLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQA   75 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCEEE-EECSCHHHHH---HHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhc---CCEEE-EEECCHHHHH---HHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHH
Confidence            6999999999999988888875   78877 6899998544   433310                 0002356788888


Q ss_pred             hhCCCCCEEEEeCCCCc
Q 017143           70 LDSGLCDVVVVSTPNMT   86 (376)
Q Consensus        70 l~~~~~D~V~i~t~~~~   86 (376)
                      +++  .|+|++|+|+..
T Consensus        76 ~~~--aDvViiaVptp~   90 (450)
T 3gg2_A           76 VPE--ADIIFIAVGTPA   90 (450)
T ss_dssp             GGG--CSEEEECCCCCB
T ss_pred             Hhc--CCEEEEEcCCCc
Confidence            876  899999999874

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=98.10  E-value=6.7e-06  Score=71.91  Aligned_cols=82  Identities=17%  Similarity=0.234  Sum_probs=61.9

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH-HH----------HHHHHHhcCCCCCccCCHHHHhhCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSR-QQ----------ALKLANAFDWPLKVFPGHQELLDSG   73 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~----------~~~~~~~~~~~~~~~~~~~~~l~~~   73 (376)
                      ...||+|||+|.||......|.+.   +.+|+ ++|+++++. .+          ..+++++++.  ..+.+.++++++ 
T Consensus        18 ~~~kIgiIG~G~mG~alA~~L~~~---G~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~~-   90 (245)
T 3dtt_A           18 QGMKIAVLGTGTVGRTMAGALADL---GHEVT-IGTRDPKATLARAEPDAMGAPPFSQWLPEHPH--VHLAAFADVAAG-   90 (245)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHT---TCEEE-EEESCHHHHHTCC-------CCHHHHGGGSTT--CEEEEHHHHHHH-
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC---CCEEE-EEeCChhhhhhhhhhhhhcchhhhHHHhhcCc--eeccCHHHHHhc-
Confidence            468999999999999998888875   67765 689988730 00          4555656553  367889999887 


Q ss_pred             CCCEEEEeCCCCccHHHHHHH
Q 017143           74 LCDVVVVSTPNMTHYQILMDI   94 (376)
Q Consensus        74 ~~D~V~i~t~~~~h~~~~~~a   94 (376)
                       .|+|++++|++...+.+.+.
T Consensus        91 -aDvVilavp~~~~~~~~~~i  110 (245)
T 3dtt_A           91 -AELVVNATEGASSIAALTAA  110 (245)
T ss_dssp             -CSEEEECSCGGGHHHHHHHH
T ss_pred             -CCEEEEccCcHHHHHHHHHh
Confidence             89999999999877776543

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=98.05  E-value=1.2e-06  Score=69.45  Aligned_cols=115  Identities=11%  Similarity=0.061  Sum_probs=80.0

Q ss_pred             ceeEEEEeC----ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEe
Q 017143            6 TVKYGIIGM----GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         6 ~~~v~iiG~----G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~   81 (376)
                      +-+|+|||+    |.+|..++..+.+.   +++   |++.++.+.  .++   -.|++  +|.|++++-+.  +|+++|+
T Consensus        13 p~~vaVvGas~~~g~~G~~~~~~l~~~---G~~---v~~vnp~~~--~~~---i~G~~--~~~sl~el~~~--vDlavi~   77 (140)
T 1iuk_A           13 AKTIAVLGAHKDPSRPAHYVPRYLREQ---GYR---VLPVNPRFQ--GEE---LFGEE--AVASLLDLKEP--VDILDVF   77 (140)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHT---TCE---EEEECGGGT--TSE---ETTEE--CBSSGGGCCSC--CSEEEEC
T ss_pred             CCEEEEECCCCCCCChHHHHHHHHHHC---CCE---EEEeCCCcc--cCc---CCCEE--ecCCHHHCCCC--CCEEEEE
Confidence            568999999    68899888888775   777   444555410  111   14654  99999998764  9999999


Q ss_pred             CCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEE-eeccccCHH
Q 017143           82 TPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQV-GLEYRYMPP  142 (376)
Q Consensus        82 t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v-~~~~r~~p~  142 (376)
                      +|+....+++.+|++.|. +.|++-.+..     .+++.+.+++ +|+.+.- ++.....|.
T Consensus        78 vp~~~~~~v~~~~~~~gi-~~i~~~~g~~-----~~~~~~~a~~-~Gir~vgpnc~g~~~~~  132 (140)
T 1iuk_A           78 RPPSALMDHLPEVLALRP-GLVWLQSGIR-----HPEFEKALKE-AGIPVVADRCLMVEHKR  132 (140)
T ss_dssp             SCHHHHTTTHHHHHHHCC-SCEEECTTCC-----CHHHHHHHHH-TTCCEEESCCHHHHHHH
T ss_pred             eCHHHHHHHHHHHHHcCC-CEEEEcCCcC-----HHHHHHHHHH-cCCEEEcCCccceEChh
Confidence            999888888888888442 4577765543     3778888855 4766543 455444443

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.02  E-value=4e-05  Score=73.68  Aligned_cols=76  Identities=16%  Similarity=0.239  Sum_probs=53.1

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-----------------CCccCCH
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-----------------LKVFPGH   66 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~   66 (376)
                      ++++||+|||+|.+|..+...|++. .++.+|+ ++|+++++   .+++.+. +.+                 +..++++
T Consensus         7 ~~~mkI~VIG~G~vG~~~A~~La~~-g~g~~V~-~~D~~~~~---v~~l~~g-~~~i~e~gl~~~~~~~~~~~l~~t~~~   80 (481)
T 2o3j_A            7 GKVSKVVCVGAGYVGGPTCAMIAHK-CPHITVT-VVDMNTAK---IAEWNSD-KLPIYEPGLDEIVFAARGRNLFFSSDI   80 (481)
T ss_dssp             CCCCEEEEECCSTTHHHHHHHHHHH-CTTSEEE-EECSCHHH---HHHHTSS-SCSSCCTTHHHHHHHHBTTTEEEESCH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhc-CCCCEEE-EEECCHHH---HHHHHCC-CCCcCCCCHHHHHHHhhcCCEEEECCH
Confidence            3457999999999999988888775 1368877 47999884   4444321 111                 2345677


Q ss_pred             HHHhhCCCCCEEEEeCCCCcc
Q 017143           67 QELLDSGLCDVVVVSTPNMTH   87 (376)
Q Consensus        67 ~~~l~~~~~D~V~i~t~~~~h   87 (376)
                      ++.+++  .|+|+||+|+..+
T Consensus        81 ~~~~~~--aDvvii~Vptp~~   99 (481)
T 2o3j_A           81 PKAIAE--ADLIFISVNTPTK   99 (481)
T ss_dssp             HHHHHH--CSEEEECCCCCBC
T ss_pred             HHHhhc--CCEEEEecCCccc
Confidence            777765  8999999887553

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=97.99  E-value=2.5e-05  Score=69.92  Aligned_cols=76  Identities=21%  Similarity=0.317  Sum_probs=56.8

Q ss_pred             ceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      ++||+|||+ |.+|......+.+.   +.+|+ ++|+++++   ++++.+ +|+.  . .+.++++++  .|+|++++|+
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~---g~~V~-~~~r~~~~---~~~~~~-~g~~--~-~~~~~~~~~--aDvVi~av~~   77 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDS---AHHLA-AIEIAPEG---RDRLQG-MGIP--L-TDGDGWIDE--ADVVVLALPD   77 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHS---SSEEE-EECCSHHH---HHHHHH-TTCC--C-CCSSGGGGT--CSEEEECSCH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhC---CCEEE-EEECCHHH---HHHHHh-cCCC--c-CCHHHHhcC--CCEEEEcCCc
Confidence            469999999 99999998888775   67876 78999874   444433 5754  3 366677765  8999999999


Q ss_pred             CccHHHHHHH
Q 017143           85 MTHYQILMDI   94 (376)
Q Consensus        85 ~~h~~~~~~a   94 (376)
                      ....+++.+.
T Consensus        78 ~~~~~v~~~l   87 (286)
T 3c24_A           78 NIIEKVAEDI   87 (286)
T ss_dssp             HHHHHHHHHH
T ss_pred             hHHHHHHHHH
Confidence            8766655544

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=97.99  E-value=8.2e-06  Score=75.11  Aligned_cols=141  Identities=14%  Similarity=0.143  Sum_probs=83.0

Q ss_pred             CCCC-CceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCC-----------CCCcc-CCH
Q 017143            1 MAAN-DTVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDW-----------PLKVF-PGH   66 (376)
Q Consensus         1 m~~~-~~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-----------~~~~~-~~~   66 (376)
                      |.+| +++|||||| +|..|...+..|.++  |.++|+.+.+++..    .+.+...|..           +..+. .+.
T Consensus         1 ~~~M~~~~kVaIvGATGyvG~eLlrlL~~h--P~~el~~l~S~~sa----Gk~~~~~~p~~~~~~~~~~~~~~~v~~~~~   74 (359)
T 4dpl_A            1 MILMRRTLKAAILGATGLVGIEYVRMLSNH--PYIKPAYLAGKGSV----GKPYGEVVRWQTVGQVPKEIADMEIKPTDP   74 (359)
T ss_dssp             -----CCEEEEETTTTSTTHHHHHHHHTTC--SSEEEEEEEESTTT----TSBHHHHCCCCSSSCCCHHHHTCBCEECCG
T ss_pred             CCcCCCCCeEEEECCCCHHHHHHHHHHHhC--CCceEEEEECchhc----CCChhHhcccccccccccccccceEEeCCH
Confidence            5544 579999999 699999999988888  99999999876542    2222222210           10111 122


Q ss_pred             HHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEE-e--------cCCC---CCHHHHHHHHHHHHhC-CCeEEEE
Q 017143           67 QELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLV-E--------KPLC---TTVADCKKVVDAARKR-PDILVQV  133 (376)
Q Consensus        67 ~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~-E--------KP~a---~~~~e~~~l~~~a~~~-~~~~~~v  133 (376)
                      ++ +  .++|+|+.|+|+....+++.++++  +|..|+- -        -|..   .+.++.+.+...-+++ .+-.+..
T Consensus        75 ~~-~--~~vDvvf~a~p~~~s~~~a~~~~~--~G~~vIDlSa~~R~~~~~p~~vpEvN~~~i~~i~~~~~~~~~~~~iIa  149 (359)
T 4dpl_A           75 KL-M--DDVDIIFSPLPQGAAGPVEEQFAK--EGFPVISNSPDHRFDPDVPLLVPELNPHTISLIDEQRKRREWKGFIVT  149 (359)
T ss_dssp             GG-C--TTCCEEEECCCTTTHHHHHHHHHH--TTCEEEECSSTTTTCTTSCBCCTTTCGGGGGHHHHHHHHHTCSSEEEE
T ss_pred             HH-h--cCCCEEEECCChHHHHHHHHHHHH--CCCEEEEcCCCccCCCCccEEEcCCCHHHHhhHhhcccccccCccEEE
Confidence            22 3  359999999999999999999999  7776654 1        2322   2333332222211011 0123444


Q ss_pred             eeccccCHHHHHHHHHHHc
Q 017143          134 GLEYRYMPPVAKLIQIVKS  152 (376)
Q Consensus       134 ~~~~r~~p~~~~~k~~i~~  152 (376)
                      +-++.-......++-+.+.
T Consensus       150 nPgC~tt~~~l~L~PL~~~  168 (359)
T 4dpl_A          150 TPLCTAQGAAIPLGAIFKD  168 (359)
T ss_dssp             CCCHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHh
Confidence            5555445556666777765

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=97.99  E-value=8.2e-06  Score=75.11  Aligned_cols=141  Identities=14%  Similarity=0.143  Sum_probs=83.0

Q ss_pred             CCCC-CceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCC-----------CCCcc-CCH
Q 017143            1 MAAN-DTVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDW-----------PLKVF-PGH   66 (376)
Q Consensus         1 m~~~-~~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-----------~~~~~-~~~   66 (376)
                      |.+| +++|||||| +|..|...+..|.++  |.++|+.+.+++..    .+.+...|..           +..+. .+.
T Consensus         1 ~~~M~~~~kVaIvGATGyvG~eLlrlL~~h--P~~el~~l~S~~sa----Gk~~~~~~p~~~~~~~~~~~~~~~v~~~~~   74 (359)
T 4dpk_A            1 MILMRRTLKAAILGATGLVGIEYVRMLSNH--PYIKPAYLAGKGSV----GKPYGEVVRWQTVGQVPKEIADMEIKPTDP   74 (359)
T ss_dssp             -----CCEEEEETTTTSTTHHHHHHHHTTC--SSEEEEEEEESTTT----TSBHHHHCCCCSSSCCCHHHHTCBCEECCG
T ss_pred             CCcCCCCCeEEEECCCCHHHHHHHHHHHhC--CCceEEEEECchhc----CCChhHhcccccccccccccccceEEeCCH
Confidence            5544 579999999 699999999988888  99999999876542    2222222210           10111 122


Q ss_pred             HHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEE-e--------cCCC---CCHHHHHHHHHHHHhC-CCeEEEE
Q 017143           67 QELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLV-E--------KPLC---TTVADCKKVVDAARKR-PDILVQV  133 (376)
Q Consensus        67 ~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~-E--------KP~a---~~~~e~~~l~~~a~~~-~~~~~~v  133 (376)
                      ++ +  .++|+|+.|+|+....+++.++++  +|..|+- -        -|..   .+.++.+.+...-+++ .+-.+..
T Consensus        75 ~~-~--~~vDvvf~a~p~~~s~~~a~~~~~--~G~~vIDlSa~~R~~~~~p~~vpEvN~~~i~~i~~~~~~~~~~~~iIa  149 (359)
T 4dpk_A           75 KL-M--DDVDIIFSPLPQGAAGPVEEQFAK--EGFPVISNSPDHRFDPDVPLLVPELNPHTISLIDEQRKRREWKGFIVT  149 (359)
T ss_dssp             GG-C--TTCCEEEECCCTTTHHHHHHHHHH--TTCEEEECSSTTTTCTTSCBCCTTTCGGGGGHHHHHHHHHTCSSEEEE
T ss_pred             HH-h--cCCCEEEECCChHHHHHHHHHHHH--CCCEEEEcCCCccCCCCccEEEcCCCHHHHhhHhhcccccccCccEEE
Confidence            22 3  359999999999999999999999  7776654 1        2322   2333332222211011 0123444


Q ss_pred             eeccccCHHHHHHHHHHHc
Q 017143          134 GLEYRYMPPVAKLIQIVKS  152 (376)
Q Consensus       134 ~~~~r~~p~~~~~k~~i~~  152 (376)
                      +-++.-......++-+.+.
T Consensus       150 nPgC~tt~~~l~L~PL~~~  168 (359)
T 4dpk_A          150 TPLCTAQGAAIPLGAIFKD  168 (359)
T ss_dssp             CCCHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHh
Confidence            5555445556666777765

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=97.99  E-value=2.1e-05  Score=70.18  Aligned_cols=104  Identities=17%  Similarity=0.143  Sum_probs=68.5

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCc--EEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGV--SVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~--~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      .||+|||+|.||..+...+...   +.  +|+ ++|+++++.+   . +.++|+....++++++++.+ +.|+|++|+|+
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~---g~~~~V~-~~d~~~~~~~---~-~~~~g~~~~~~~~~~~~~~~-~aDvVilavp~   72 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRS---GFKGKIY-GYDINPESIS---K-AVDLGIIDEGTTSIAKVEDF-SPDFVMLSSPV   72 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHT---TCCSEEE-EECSCHHHHH---H-HHHTTSCSEEESCGGGGGGT-CCSEEEECSCH
T ss_pred             cEEEEEecCHHHHHHHHHHHhc---CCCcEEE-EEeCCHHHHH---H-HHHCCCcccccCCHHHHhcC-CCCEEEEcCCH
Confidence            5899999999999998888775   44  655 6899987433   3 23556531246788888872 38999999999


Q ss_pred             CccHHHHHHH---HcCCCCCeEEEecCCCCCHHHHHHHHHHH
Q 017143           85 MTHYQILMDI---INHPKPHHVLVEKPLCTTVADCKKVVDAA  123 (376)
Q Consensus        85 ~~h~~~~~~a---l~~~~g~~Vl~EKP~a~~~~e~~~l~~~a  123 (376)
                      ..+.+++.+.   ++  .+. +++.-- .......+.|.+..
T Consensus        73 ~~~~~v~~~l~~~l~--~~~-iv~~~~-~~~~~~~~~l~~~l  110 (281)
T 2g5c_A           73 RTFREIAKKLSYILS--EDA-TVTDQG-SVKGKLVYDLENIL  110 (281)
T ss_dssp             HHHHHHHHHHHHHSC--TTC-EEEECC-SCCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCC--CCc-EEEECC-CCcHHHHHHHHHhc
Confidence            9877776554   34  443 555432 22233344455544

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=97.99  E-value=7.4e-05  Score=71.62  Aligned_cols=76  Identities=17%  Similarity=0.204  Sum_probs=53.5

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHH------------HHHh---cCCCCCccCCHHHHh
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALK------------LANA---FDWPLKVFPGHQELL   70 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~------------~~~~---~~~~~~~~~~~~~~l   70 (376)
                      ++||+|||+|.+|..+...+++.. ++.+|+ ++|+++++.+...+            +.++   .+  +..++++++++
T Consensus         5 ~mkI~VIG~G~mG~~lA~~La~~g-~G~~V~-~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~--~~~t~~~~e~~   80 (467)
T 2q3e_A            5 IKKICCIGAGYVGGPTCSVIAHMC-PEIRVT-VVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKN--LFFSTNIDDAI   80 (467)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHC-TTSEEE-EECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTT--EEEESCHHHHH
T ss_pred             ccEEEEECCCHHHHHHHHHHHhcC-CCCEEE-EEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCC--EEEECCHHHHH
Confidence            579999999999999888887751 367866 57999885443210            1111   12  23567888888


Q ss_pred             hCCCCCEEEEeCCCCcc
Q 017143           71 DSGLCDVVVVSTPNMTH   87 (376)
Q Consensus        71 ~~~~~D~V~i~t~~~~h   87 (376)
                      ++  .|+|++|+|+..+
T Consensus        81 ~~--aDvViiaVptp~~   95 (467)
T 2q3e_A           81 KE--ADLVFISVNTPTK   95 (467)
T ss_dssp             HH--CSEEEECCCCCBC
T ss_pred             hc--CCEEEEEcCCchh
Confidence            76  8999999887654

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=97.96  E-value=1.5e-05  Score=70.28  Aligned_cols=74  Identities=19%  Similarity=0.346  Sum_probs=57.2

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCC---cEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEe
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQG---VSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~---~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~   81 (376)
                      +++||+|||+|.||..+...+.+.  ..   .+| .++|+++++          +|+  ..+++.++++++  .|+|+++
T Consensus         3 ~~m~i~iiG~G~mG~~~a~~l~~~--g~~~~~~v-~~~~~~~~~----------~g~--~~~~~~~~~~~~--~D~vi~~   65 (262)
T 2rcy_A            3 ENIKLGFMGLGQMGSALAHGIANA--NIIKKENL-FYYGPSKKN----------TTL--NYMSSNEELARH--CDIIVCA   65 (262)
T ss_dssp             SSSCEEEECCSHHHHHHHHHHHHH--TSSCGGGE-EEECSSCCS----------SSS--EECSCHHHHHHH--CSEEEEC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHC--CCCCCCeE-EEEeCCccc----------Cce--EEeCCHHHHHhc--CCEEEEE
Confidence            357999999999999988888775  21   454 578998873          465  467889888876  8999999


Q ss_pred             CCCCccHHHHHHHH
Q 017143           82 TPNMTHYQILMDII   95 (376)
Q Consensus        82 t~~~~h~~~~~~al   95 (376)
                      +|+....+++.+..
T Consensus        66 v~~~~~~~v~~~l~   79 (262)
T 2rcy_A           66 VKPDIAGSVLNNIK   79 (262)
T ss_dssp             SCTTTHHHHHHHSG
T ss_pred             eCHHHHHHHHHHHH
Confidence            99887777766544

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=97.95  E-value=5.5e-05  Score=68.86  Aligned_cols=80  Identities=18%  Similarity=0.274  Sum_probs=57.0

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCC----cEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEE
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQG----VSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~----~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      +++||+|||+|.||......|.+.   +    .+|+ +++++++. ++++++. ++|+.  ..++..+++..  .|+|++
T Consensus        21 ~~mkI~iIG~G~mG~ala~~L~~~---G~~~~~~V~-v~~r~~~~-~~~~~l~-~~G~~--~~~~~~e~~~~--aDvVil   90 (322)
T 2izz_A           21 QSMSVGFIGAGQLAFALAKGFTAA---GVLAAHKIM-ASSPDMDL-ATVSALR-KMGVK--LTPHNKETVQH--SDVLFL   90 (322)
T ss_dssp             -CCCEEEESCSHHHHHHHHHHHHT---TSSCGGGEE-EECSCTTS-HHHHHHH-HHTCE--EESCHHHHHHH--CSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC---CCCCcceEE-EECCCccH-HHHHHHH-HcCCE--EeCChHHHhcc--CCEEEE
Confidence            457999999999999988888775   4    5654 78998751 0233333 45754  67788888876  899999


Q ss_pred             eCCCCccHHHHHHH
Q 017143           81 STPNMTHYQILMDI   94 (376)
Q Consensus        81 ~t~~~~h~~~~~~a   94 (376)
                      |+|++.-.+++.+.
T Consensus        91 av~~~~~~~vl~~l  104 (322)
T 2izz_A           91 AVKPHIIPFILDEI  104 (322)
T ss_dssp             CSCGGGHHHHHHHH
T ss_pred             EeCHHHHHHHHHHH
Confidence            99976555555443

>2y1e_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase, DOXP/MEP pathway; 1.65A {Mycobacterium tuberculosis} PDB: 2jcv_A* 2jcz_A* 2jd2_A 2jd1_A 2y1d_A* 2y1c_A 2y1f_A* 2y1g_A* 3ras_A* 4a03_A* 4aic_A* 2jcx_A* 2jcy_A 2jd0_A* 2c82_A

Probab=97.93  E-value=0.00034  Score=63.28  Aligned_cols=210  Identities=17%  Similarity=0.189  Sum_probs=132.3

Q ss_pred             ceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeC-C-ChhhHHHHHHHHHhcCCCC--------------Ccc---CC
Q 017143            6 TVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIAD-P-HLQSRQQALKLANAFDWPL--------------KVF---PG   65 (376)
Q Consensus         6 ~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d-~-~~~~~~~~~~~~~~~~~~~--------------~~~---~~   65 (376)
                      |.||.|+| +|.||..-+.-+++++ ..|+|++++. . +-+   ...+.+++|+-..              +++   +.
T Consensus        21 mk~i~ILGSTGSIGtqtLdVi~~~p-d~f~V~aLaa~g~nv~---~L~~q~~~f~p~~v~v~d~~~~~~~~~~v~~G~~~   96 (398)
T 2y1e_A           21 RLRVVVLGSTGSIGTQALQVIADNP-DRFEVVGLAAGGAHLD---TLLRQRAQTGVTNIAVADEHAAQRVGDIPYHGSDA   96 (398)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCT-TTEEEEEEEECSSCHH---HHHHHHHHHCCCCEEESCHHHHHHHCCCSEESTTH
T ss_pred             ceEEEEEccCcHHHHHHHHHHHhCC-CceEEEEEEecCCCHH---HHHHHHHHcCCCEEEEcCHHHhhhcCCEEEecHHH
Confidence            46899999 5999999998888872 4599999987 3 333   4555555655331              111   22


Q ss_pred             HHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHH-HHHHHhCCCeEEEEeeccccCHHHH
Q 017143           66 HQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKV-VDAARKRPDILVQVGLEYRYMPPVA  144 (376)
Q Consensus        66 ~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l-~~~a~~~~~~~~~v~~~~r~~p~~~  144 (376)
                      +.++...+++|.|+.+..-..=....++|++  +||.|.+.--  .++--+-+| .+++ ++++ .+      --+....
T Consensus        97 l~~~a~~~~~D~Vv~AIvG~aGL~PTlaAi~--aGK~iaLANK--EsLV~aG~lv~~~a-~~~~-il------PVDSEHs  164 (398)
T 2y1e_A           97 ATRLVEQTEADVVLNALVGALGLRPTLAALK--TGARLALANK--ESLVAGGSLVLRAA-RPGQ-IV------PVDSEHS  164 (398)
T ss_dssp             HHHHHHHSCCSEEEECCCSGGGHHHHHHHHH--HTCEEEECCH--HHHHHHTHHHHHHC-CTTC-EE------ECSHHHH
T ss_pred             HHHHhcCCCCCEEEEeCcCHHHHHHHHHHHH--CCCceEEccc--chheecHHHHHHHH-HHcC-ce------EecchHh
Confidence            4556656779999999999888999999999  8999987432  123333334 4445 5545 22      2245556


Q ss_pred             HHHHHHHcCCCCceEEEEEeeccCCcccc---------------cCccccccccC--CcccccccccHHHHHHHHhCCCC
Q 017143          145 KLIQIVKSGSIGQVKMVAIREHRFPFLVK---------------VNDWNRFNENT--GGTLVEKCCHFFDLMRLFVGSNP  207 (376)
Q Consensus       145 ~~k~~i~~g~iG~i~~~~~~~~~~~~~~~---------------~~~w~~~~~~~--gG~l~d~g~H~ld~~~~l~G~~~  207 (376)
                      .+-|.+..+...+|..+...-..+++...               -++|..-++-+  +-.|++-|--.|. +.||||-++
T Consensus       165 AIfQ~L~g~~~~~V~kiiLTASGGPFR~~~~e~L~~vT~eqAl~HPnWsMG~KITIDSATmmNKGLEvIE-A~~LF~~~~  243 (398)
T 2y1e_A          165 ALAQCLRGGTPDEVAKLVLTASGGPFRGWSAADLEHVTPEQAGAHPTWSMGPMNTLNSASLVNKGLEVIE-THLLFGIPY  243 (398)
T ss_dssp             HHHHHGGGSCGGGEEEEEEEECCCTTTTCCHHHHTTCCTTTC-------CCHHHHHHHHHSHHHHHHHHH-HHHHHCCCG
T ss_pred             HHHHHhCCCCcccccEEEEECCccccCCCCHHHHhCCCHHHHhhCCCcccCceeeehhHhHhhhhHHHHH-HHHHcCCCH
Confidence            66666665555678888877666665431               24554332211  1233443333232 689999877


Q ss_pred             eEEEEecccccccCccccCCCCCcccccEEEEEEecCCcEE
Q 017143          208 MRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENGSRG  248 (376)
Q Consensus       208 ~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~G~~~  248 (376)
                      .++....+.                ....+.+++|.||.+.
T Consensus       244 d~I~VvVHP----------------QSiIHSmVef~DGSv~  268 (398)
T 2y1e_A          244 DRIDVVVHP----------------QSIIHSMVTFIDGSTI  268 (398)
T ss_dssp             GGEEEEECT----------------TCCEEEEEEETTSCEE
T ss_pred             HHeEEEECC----------------CCceeEEEEEeCCcEE
Confidence            777776543                2458899999999764

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=97.90  E-value=0.0001  Score=65.74  Aligned_cols=105  Identities=12%  Similarity=0.182  Sum_probs=66.3

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH--------hc-CCC----------CCccCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN--------AF-DWP----------LKVFPG   65 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~--------~~-~~~----------~~~~~~   65 (376)
                      +..||+|||+|.||......++..   +++|+ ++|+++++++++.+..+        +. ++.          +...++
T Consensus         3 ~~~kV~VIGaG~mG~~iA~~la~~---G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~   78 (283)
T 4e12_A            3 GITNVTVLGTGVLGSQIAFQTAFH---GFAVT-AYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDD   78 (283)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHT---TCEEE-EECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC---CCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCC
Confidence            356899999999999988888775   78866 68999986655443210        00 110          135688


Q ss_pred             HHHHhhCCCCCEEEEeCCCC--ccHHHHHHHHcCCCCCeEEEecCCCCCHHH
Q 017143           66 HQELLDSGLCDVVVVSTPNM--THYQILMDIINHPKPHHVLVEKPLCTTVAD  115 (376)
Q Consensus        66 ~~~~l~~~~~D~V~i~t~~~--~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e  115 (376)
                      +++++++  .|+|++++|..  ....+..+..+......|++.---+.+..+
T Consensus        79 ~~~~~~~--aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~  128 (283)
T 4e12_A           79 LAQAVKD--ADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSD  128 (283)
T ss_dssp             HHHHTTT--CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHH
T ss_pred             HHHHhcc--CCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH
Confidence            8888876  89999999987  434443333221012345654444445443

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=97.89  E-value=0.00016  Score=69.65  Aligned_cols=114  Identities=14%  Similarity=0.234  Sum_probs=78.5

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH-h---cCCCCCccCCHHHHhhC-CCCCEEEE
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN-A---FDWPLKVFPGHQELLDS-GLCDVVVV   80 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~l~~-~~~D~V~i   80 (376)
                      ..+|||||+|.||......|.+.   +++|+ ++|++++   +++++.+ +   .|+  ..+.|++++++. .++|+|++
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~---G~~V~-v~dr~~~---~~~~l~~~~~~~~gi--~~~~s~~e~v~~l~~aDvVil   80 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADH---GFTVC-AYNRTQS---KVDHFLANEAKGKSI--IGATSIEDFISKLKRPRKVML   80 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT---TCCEE-EECSSSH---HHHHHHHTTTTTSSE--ECCSSHHHHHHTSCSSCEEEE
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHC---CCEEE-EEeCCHH---HHHHHHcccccCCCe--EEeCCHHHHHhcCCCCCEEEE
Confidence            46899999999999999888875   67764 7999998   4555554 3   354  467899998875 34899999


Q ss_pred             eCCCCccHHHHHHHHc-CC-CCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEE
Q 017143           81 STPNMTHYQILMDIIN-HP-KPHHVLVEKPLCTTVADCKKVVDAARKRPDILV  131 (376)
Q Consensus        81 ~t~~~~h~~~~~~al~-~~-~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~  131 (376)
                      ++|+....+-+.+.+. .- .| .+++.-- .....+..++.+...++ ++.+
T Consensus        81 ~Vp~~~~v~~vl~~l~~~l~~g-~iIId~s-~~~~~~~~~l~~~l~~~-g~~~  130 (497)
T 2p4q_A           81 LVKAGAPVDALINQIVPLLEKG-DIIIDGG-NSHFPDSNRRYEELKKK-GILF  130 (497)
T ss_dssp             CCCSSHHHHHHHHHHGGGCCTT-CEEEECS-CCCHHHHHHHHHHHHHT-TCEE
T ss_pred             EcCChHHHHHHHHHHHHhCCCC-CEEEECC-CCChhHHHHHHHHHHHc-CCce
Confidence            9999765554444332 10 34 4566532 44666777777777444 6544

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*

Probab=97.89  E-value=2.2e-05  Score=71.63  Aligned_cols=98  Identities=23%  Similarity=0.214  Sum_probs=67.9

Q ss_pred             ceeEEEEeCChhhHHHHHHhhh---hcCCCcEEEEEeCC-ChhhHHHHHHHHH---hcCC-----------------CCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHH---LRSQGVSVVCIADP-HLQSRQQALKLAN---AFDW-----------------PLK   61 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~---~~~~~~~~~~v~d~-~~~~~~~~~~~~~---~~~~-----------------~~~   61 (376)
                      ++||||+|.|.+|+..++.+..   .  +++++++|.++ +++   ....+.+   -+|-                 ++.
T Consensus         2 ~ikVgI~G~G~iGr~l~r~l~~~~~~--~~~eivai~~~~~~~---~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~   76 (339)
T 2x5j_O            2 TVRVAINGFGRIGRNVVRALYESGRR--AEITVVAINELADAA---GMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIR   76 (339)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTSGG--GTEEEEEEECSSCHH---HHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEE
T ss_pred             CeEEEEECcCHHHHHHHHHHHcCCCC--CCEEEEEEeCCCCHH---HHHHHhcccccCCCCCceEEEcCCeeEECCEEEE
Confidence            4899999999999999999887   6  89999999997 333   2222221   1110                 011


Q ss_pred             cc--CCHHHHh-hCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCC
Q 017143           62 VF--PGHQELL-DSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPL  109 (376)
Q Consensus        62 ~~--~~~~~~l-~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~  109 (376)
                      ++  .+.+++. .+.++|+|+-|||.....+.+.+.+++| -|-|++.-|.
T Consensus        77 v~~~~dp~~l~~~~~~vDvV~e~tg~~~s~e~a~~~l~~G-akkVVId~~a  126 (339)
T 2x5j_O           77 VLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAG-AKKVLFSHPG  126 (339)
T ss_dssp             EECCSSGGGCCHHHHTCSEEEECSSSCCSHHHHHHHHHTT-CSEEEESSCC
T ss_pred             EEecCChHHCcccccCCCEEEECCCccccHHHHHHHHHcC-CCEEEEeccc
Confidence            22  2334432 1125899999999999999999999943 2458888776

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=97.88  E-value=9.9e-05  Score=69.44  Aligned_cols=133  Identities=15%  Similarity=0.237  Sum_probs=82.2

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHH------------HHHh--cCCCCCccCCHHHHhh
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALK------------LANA--FDWPLKVFPGHQELLD   71 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~------------~~~~--~~~~~~~~~~~~~~l~   71 (376)
                      ++||+|||+|.+|......+++    +.+|+ ++|+++++.+...+            +..+  .+  +...+|++++++
T Consensus        36 ~mkIaVIGlG~mG~~lA~~La~----G~~V~-~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~--l~~ttd~~ea~~  108 (432)
T 3pid_A           36 FMKITISGTGYVGLSNGVLIAQ----NHEVV-ALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLN--FRATTDKHDAYR  108 (432)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT----TSEEE-EECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCC--EEEESCHHHHHT
T ss_pred             CCEEEEECcCHHHHHHHHHHHc----CCeEE-EEecCHHHhhHHhccCCccccccHHHHHhhccCC--eEEEcCHHHHHh
Confidence            5799999999999987766653    57876 58999985443322            0001  12  246678888887


Q ss_pred             CCCCCEEEEeCCCCcc----------HHH----HHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCe--------
Q 017143           72 SGLCDVVVVSTPNMTH----------YQI----LMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDI--------  129 (376)
Q Consensus        72 ~~~~D~V~i~t~~~~h----------~~~----~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~--------  129 (376)
                      +  .|+|++|+|+...          ..-    +.. ++  .|.-| +.|- +..+.-++++.+.. ...++        
T Consensus       109 ~--aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~--~g~iV-V~~S-Tv~pgtt~~l~~~l-~~~~v~~sPe~~~  180 (432)
T 3pid_A          109 N--ADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-IN--PNAVM-IIKS-TIPVGFTRDIKERL-GIDNVIFSPEFLR  180 (432)
T ss_dssp             T--CSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HC--TTSEE-EECS-CCCTTHHHHHHHHH-TCCCEEECCCCCC
T ss_pred             C--CCEEEEeCCCccccccccccHHHHHHHHHHHHh-cC--CCcEE-EEeC-CCChHHHHHHHHHH-hhccEeecCccCC
Confidence            6  8999999998742          221    223 56  56544 5543 34555566666666 33232        


Q ss_pred             ------------EEEEeeccccCHHHHHHHHHHHcCCCC
Q 017143          130 ------------LVQVGLEYRYMPPVAKLIQIVKSGSIG  156 (376)
Q Consensus       130 ------------~~~v~~~~r~~p~~~~~k~~i~~g~iG  156 (376)
                                  .+++|-.   .+....++.++..+.++
T Consensus       181 ~G~A~~~~l~p~rIvvG~~---~~~~~~~~~ll~~~~~~  216 (432)
T 3pid_A          181 EGRALYDNLHPSRIVIGER---SARAERFADLLKEGAIK  216 (432)
T ss_dssp             TTSHHHHHHSCSCEEESSC---SHHHHHHHHHHHHHCSS
T ss_pred             cchhhhcccCCceEEecCC---HHHHHHHHHHHHhhhcc
Confidence                        3444433   34567777777765443

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=97.88  E-value=5.4e-05  Score=71.95  Aligned_cols=71  Identities=15%  Similarity=0.134  Sum_probs=53.0

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh------------------cCCCCCccCCHHH
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA------------------FDWPLKVFPGHQE   68 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~   68 (376)
                      +||+|||+|.+|..+...+++.   +.+|+ ++|+++++.   +++.+.                  .|- +..++++++
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~---G~~V~-~~d~~~~~~---~~l~~~~~~i~e~~l~~~~~~~~~~g~-l~~t~~~~~   72 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSAR---GHEVI-GVDVSSTKI---DLINQGKSPIVEPGLEALLQQGRQTGR-LSGTTDFKK   72 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT---TCEEE-EECSCHHHH---HHHHTTCCSSCCTTHHHHHHHHHHTTC-EEEESCHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHC---CCEEE-EEECCHHHH---HHHhCCCCCcCCCCHHHHHHhhcccCc-eEEeCCHHH
Confidence            4899999999999988888875   67865 579998854   344331                  121 235678888


Q ss_pred             HhhCCCCCEEEEeCCCCcc
Q 017143           69 LLDSGLCDVVVVSTPNMTH   87 (376)
Q Consensus        69 ~l~~~~~D~V~i~t~~~~h   87 (376)
                      ++++  .|+|+||+|+..+
T Consensus        73 ~~~~--aDvviiaVptp~~   89 (436)
T 1mv8_A           73 AVLD--SDVSFICVGTPSK   89 (436)
T ss_dssp             HHHT--CSEEEECCCCCBC
T ss_pred             Hhcc--CCEEEEEcCCCcc
Confidence            8876  8999999998775

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=97.82  E-value=2.8e-05  Score=71.05  Aligned_cols=102  Identities=22%  Similarity=0.185  Sum_probs=66.5

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeC-CC-hhhHHHHHHHHHhcCC-----------------CCCccC
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIAD-PH-LQSRQQALKLANAFDW-----------------PLKVFP   64 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d-~~-~~~~~~~~~~~~~~~~-----------------~~~~~~   64 (376)
                      ++++||||+|.|.+|+..++.+...  ++++|++|.| .. .+......+..+-+|.                 ++..+.
T Consensus        15 ~~~ikVgI~G~G~iGr~llR~l~~~--p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~   92 (354)
T 3cps_A           15 YFQGTLGINGFGRIGRLVLRACMER--NDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQ   92 (354)
T ss_dssp             ---CEEEEECCSHHHHHHHHHHHTC--SSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEEC
T ss_pred             CcceEEEEECCCHHHHHHHHHHHcC--CCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEe
Confidence            3578999999999999999998887  8999999999 32 2211111111111210                 011222


Q ss_pred             --CHHHHhh-CCCCCEEEEeCCCCccHHHHHHHHcCCCC-CeEEEecCC
Q 017143           65 --GHQELLD-SGLCDVVVVSTPNMTHYQILMDIINHPKP-HHVLVEKPL  109 (376)
Q Consensus        65 --~~~~~l~-~~~~D~V~i~t~~~~h~~~~~~al~~~~g-~~Vl~EKP~  109 (376)
                        +.+++.. +.++|+|+-|||.....+.+.+.++  +| |-|++.-|.
T Consensus        93 ~~dp~~i~w~~~~vDvV~eatg~~~s~e~a~~~l~--~GakkvVId~pa  139 (354)
T 3cps_A           93 AKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLK--GGAKKVIISAPP  139 (354)
T ss_dssp             CSCGGGCCHHHHTCCEEEECSSSCCSHHHHGGGGT--TTCSEEEESSCC
T ss_pred             cCChHHCCcccCCCCEEEECCCchhhHHHHHHHHH--cCCcEEEEeCCC
Confidence              3444321 1258999999999999999999999  55 348887775

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.82  E-value=0.00013  Score=57.34  Aligned_cols=82  Identities=17%  Similarity=0.093  Sum_probs=53.7

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC--CccCCHHHHhh--CCCCCEEEEe
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL--KVFPGHQELLD--SGLCDVVVVS   81 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~--~~~~D~V~i~   81 (376)
                      .++|+|+|+|.+|...+..|.+.   +.+++ ++|++++   .++++.+++++..  .-..+.+.+.+  -.+.|+|+++
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~---g~~v~-~~d~~~~---~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~   76 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEK---GHDIV-LIDIDKD---ICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAV   76 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHT---TCEEE-EEESCHH---HHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC---CCeEE-EEECCHH---HHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEe
Confidence            47999999999999998888775   67766 5688877   4555555556531  11234444332  2358999999


Q ss_pred             CCCCccHHHHHHH
Q 017143           82 TPNMTHYQILMDI   94 (376)
Q Consensus        82 t~~~~h~~~~~~a   94 (376)
                      +|+...-..+..+
T Consensus        77 ~~~~~~~~~~~~~   89 (140)
T 1lss_A           77 TGKEEVNLMSSLL   89 (140)
T ss_dssp             CSCHHHHHHHHHH
T ss_pred             eCCchHHHHHHHH
Confidence            9986444433333

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=97.80  E-value=4.2e-05  Score=70.99  Aligned_cols=78  Identities=9%  Similarity=0.099  Sum_probs=54.4

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc-------C--C--CCCccCCHHHHhhCCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF-------D--W--PLKVFPGHQELLDSGLC   75 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~-------~--~--~~~~~~~~~~~l~~~~~   75 (376)
                      +||+|||+|.||......|.+.   +.+|+ ++++++++   ++.+.+..       +  +  .+...++.++++.+  .
T Consensus        16 ~kI~iIG~G~mG~~la~~L~~~---G~~V~-~~~r~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--a   86 (366)
T 1evy_A           16 NKAVVFGSGAFGTALAMVLSKK---CREVC-VWHMNEEE---VRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNG--A   86 (366)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTT---EEEEE-EECSCHHH---HHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTT--C
T ss_pred             CeEEEECCCHHHHHHHHHHHhC---CCEEE-EEECCHHH---HHHHHHcCcccccccccccccceeeeCCHHHHHcC--C
Confidence            3999999999999988888764   66755 68998874   44444331       1  1  12345788888765  8


Q ss_pred             CEEEEeCCCCccHHHHHH
Q 017143           76 DVVVVSTPNMTHYQILMD   93 (376)
Q Consensus        76 D~V~i~t~~~~h~~~~~~   93 (376)
                      |+|++++|+....+++..
T Consensus        87 DvVilav~~~~~~~v~~~  104 (366)
T 1evy_A           87 EIILFVIPTQFLRGFFEK  104 (366)
T ss_dssp             SSEEECCCHHHHHHHHHH
T ss_pred             CEEEECCChHHHHHHHHH
Confidence            999999998655555433

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=97.77  E-value=0.00017  Score=68.38  Aligned_cols=106  Identities=20%  Similarity=0.194  Sum_probs=69.0

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcC-----------------CCCCccCCHHH
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFD-----------------WPLKVFPGHQE   68 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~   68 (376)
                      .+||+|||+|.||......|++.   +.+|+ ++|+++++.   +++.+...                 -.++..+|+++
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~---G~~V~-~~D~~~~kv---~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~e   80 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDF---GHEVV-CVDKDARKI---ELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAE   80 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT---TCEEE-EECSCSTTH---HHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHH
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHC---CCEEE-EEeCCHHHH---HHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHH
Confidence            58999999999999988888875   78877 589999854   44433210                 00235678888


Q ss_pred             HhhCCCCCEEEEeCCCCc----------cHHHHHH----HHcCCCCCeEEEecCCCCCHHHHHHHHHHHH
Q 017143           69 LLDSGLCDVVVVSTPNMT----------HYQILMD----IINHPKPHHVLVEKPLCTTVADCKKVVDAAR  124 (376)
Q Consensus        69 ~l~~~~~D~V~i~t~~~~----------h~~~~~~----al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~  124 (376)
                      .+++  .|+|+||.|+..          +..-+.+    .++  .|. +++.|- +..+..++++.+...
T Consensus        81 a~~~--aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~--~g~-iVV~~S-Tv~pgtt~~l~~~l~  144 (446)
T 4a7p_A           81 GVKD--ADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLT--KPS-VIVTKS-TVPVGTGDEVERIIA  144 (446)
T ss_dssp             HHTT--CSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCC--SCC-EEEECS-CCCTTHHHHHHHHHH
T ss_pred             HHhc--CCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcC--CCC-EEEEeC-CCCchHHHHHHHHHH
Confidence            8876  899999977654          2333222    344  454 455554 555555566655553

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=97.76  E-value=7.5e-05  Score=68.01  Aligned_cols=104  Identities=19%  Similarity=0.206  Sum_probs=68.3

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCC-ChhhHHHHHHHHHhcCC-----------------CCCc--cCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADP-HLQSRQQALKLANAFDW-----------------PLKV--FPG   65 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~-~~~~~~~~~~~~~~~~~-----------------~~~~--~~~   65 (376)
                      ++||||+|.|.+|+..++.+.+...+++++++|.|+ +++......+.-+.+|-                 ++.+  ..+
T Consensus         2 ~ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaInd~~~~~~~~~l~~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~d   81 (339)
T 3b1j_A            2 TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRN   81 (339)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSCCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCSC
T ss_pred             ceEEEEECCCHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHhccccccCCCCCcEEEcCCeeeecCceEEEEecCC
Confidence            489999999999999998887642368999999987 33321111111111210                 0111  224


Q ss_pred             HHHHhh-CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCC
Q 017143           66 HQELLD-SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLC  110 (376)
Q Consensus        66 ~~~~l~-~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a  110 (376)
                      .+++.. +.++|+|+-||+...-.+.+.+.+++| -|-|++.-|..
T Consensus        82 p~~l~w~~~~vDvV~e~tg~~~s~e~a~~~l~~G-akkVVId~~~~  126 (339)
T 3b1j_A           82 PLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAG-AKKVLITAPGK  126 (339)
T ss_dssp             GGGSCTTTTTCCEEEECSSSCCBHHHHHHHHHTT-CSEEEESSCCB
T ss_pred             hHHCcccccCCCEEEECCCccccHHHHHHHHHcC-CcEEEEeCCCC
Confidence            455532 236999999999999999999999944 24577776654

>1q0q_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase; HET: DXP NDP; 1.90A {Escherichia coli} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1q0l_A* 1q0h_A* 3r0i_A* 1k5h_A 1onn_A 1ono_A 1onp_A* 1jvs_A* 1t1r_A* 1t1s_A* 2egh_A* 3anm_A* 3anl_A* 3ann_A* 3iie_A

Probab=97.75  E-value=0.0012  Score=60.14  Aligned_cols=213  Identities=13%  Similarity=0.166  Sum_probs=132.0

Q ss_pred             ceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-----------------------CC
Q 017143            6 TVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-----------------------LK   61 (376)
Q Consensus         6 ~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-----------------------~~   61 (376)
                      +-+|.|+| +|.||..-+.-+++++ ..|+|++++..+.  .+...+.+++|+-.                       +.
T Consensus         9 ~k~i~ILGSTGSIGtqtLdVi~~~p-d~f~V~aL~ag~n--v~~L~~q~~~f~p~~v~v~d~~~~~~L~~~l~~~~~~~~   85 (406)
T 1q0q_A            9 MKQLTILGSTGSIGCSTLDVVRHNP-EHFRVVALVAGKN--VTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTE   85 (406)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCT-TTEEEEEEEESSC--HHHHHHHHHHHCCSEEEESSHHHHHHHHHHHHHTTCCCE
T ss_pred             ceeEEEEccCcHHHHHHHHHHHhCC-CccEEEEEEcCCC--HHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhcCCCCcE
Confidence            56999999 5999999998888872 4599999986432  22444444444422                       11


Q ss_pred             ccC---CHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHH-HHHHHHHHhCCCeEEEEeecc
Q 017143           62 VFP---GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADC-KKVVDAARKRPDILVQVGLEY  137 (376)
Q Consensus        62 ~~~---~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~-~~l~~~a~~~~~~~~~v~~~~  137 (376)
                      ++.   .+.++...+++|.|+.+..-..=....+.|++  +||.|.+.--=  ++--+ .-+.+++++ ++..+..-   
T Consensus        86 v~~G~~~l~~~a~~~~~D~Vv~AIvG~aGL~PTlaAi~--aGK~iaLANKE--sLV~aG~lv~~~a~~-~~~~ilPV---  157 (406)
T 1q0q_A           86 VLSGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIR--AGKTILLANKE--SLVTCGRLFMDAVKQ-SKAQLLPV---  157 (406)
T ss_dssp             EEESHHHHHHHHTCTTCCEEEECCSSGGGHHHHHHHHH--TTCEEEECCHH--HHHHHTHHHHHHHHH-HTCEEEEC---
T ss_pred             EEeCHHHHHHHhcCCCCCEEEEccccHhHHHHHHHHHH--CCCeEEEechH--HHHhchHHHHHHHHH-cCCeEEEe---
Confidence            211   13344445679999999998888999999999  89999874321  22222 334555634 46555433   


Q ss_pred             ccCHHHHHHHHHH----HcC------CCCceEEEEEeeccCCcccc---------------cCccccccccC--Cccccc
Q 017143          138 RYMPPVAKLIQIV----KSG------SIGQVKMVAIREHRFPFLVK---------------VNDWNRFNENT--GGTLVE  190 (376)
Q Consensus       138 r~~p~~~~~k~~i----~~g------~iG~i~~~~~~~~~~~~~~~---------------~~~w~~~~~~~--gG~l~d  190 (376)
                        +.....+-|.+    ...      ...+|..+..+-..+++...               -++|..-++-+  +-.|++
T Consensus       158 --DSEHsAIfQ~L~~~~~g~~~~~~~~~~~V~kiiLTASGGPFR~~~~e~L~~vT~eqAl~HPnWsMG~KITIDSATmmN  235 (406)
T 1q0q_A          158 --DSEHNAIFQSLPQPIQHNLGYADLEQNGVVSILLTGSGGPFRETPLRDLATMTPDQACRHPNWSMGRKISVDSATMMN  235 (406)
T ss_dssp             --SHHHHHHHHTSCHHHHTTTTTSCTGGGTEEEEEEEECCCTTTTSCGGGGGGCCHHHHHCCSSCCCCHHHHHHHHHTHH
T ss_pred             --cchHHHHHHHcccccCCccccccCCcccccEEEEECCCcccCCCCHHHHhCCCHHHHhcCCCccCCCeeeehHHhHHh
Confidence              34444555555    332      22457777776666665432               25665443321  223444


Q ss_pred             ccccHHHHHHHHhCCCCeEEEEecccccccCccccCCCCCcccccEEEEEEecCCcEE
Q 017143          191 KCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENGSRG  248 (376)
Q Consensus       191 ~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~G~~~  248 (376)
                      -|--.|. +.||||-++.++....+.                ....+.+++|.||.+.
T Consensus       236 KGLEvIE-A~~LF~~~~d~I~VvVHP----------------QSiIHSmVef~DGSv~  276 (406)
T 1q0q_A          236 KGLEYIE-ARWLFNASASQMEVLIHP----------------QSVIHSMVRYQDGSVL  276 (406)
T ss_dssp             HHHHHHH-HHHHHTCCGGGEEEEECT----------------TCCEEEEEEETTSCEE
T ss_pred             hhHHHHH-HHHHcCCCHHHeEEEECC----------------CCceeEEEEEcCCcEE
Confidence            4433333 689999877777776543                2458899999999764

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=97.74  E-value=5.1e-05  Score=68.95  Aligned_cols=98  Identities=23%  Similarity=0.267  Sum_probs=68.9

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCC-ChhhHHHHHHHH---HhcC-----------------CCCCccC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADP-HLQSRQQALKLA---NAFD-----------------WPLKVFP   64 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~-~~~~~~~~~~~~---~~~~-----------------~~~~~~~   64 (376)
                      |+||||+|.|.+|+..++.+..+  +++++++|.|. +.+   ....+.   +.+|                 -++.++.
T Consensus         1 mikVgI~G~G~iGr~l~R~l~~~--~~veivain~~~~~~---~~~~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~   75 (334)
T 3cmc_O            1 AVKVGINGFGRIGRNVFRAALKN--PDIEVVAVNDLTDAN---TLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKA   75 (334)
T ss_dssp             CEEEEEESCSHHHHHHHHHHTTC--TTEEEEEEECSSCHH---HHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEEC
T ss_pred             CeEEEEECCCHHHHHHHHHHhCC--CCeEEEEEeCCCCHH---HHHHHhccCCcCCCcCceEEEccCcEEECCEEEEEEe
Confidence            48999999999999999998887  89999999997 333   222222   2122                 0112221


Q ss_pred             --CHHHHh-hCCCCCEEEEeCCCCccHHHHHHHHcCCCC-CeEEEecCCC
Q 017143           65 --GHQELL-DSGLCDVVVVSTPNMTHYQILMDIINHPKP-HHVLVEKPLC  110 (376)
Q Consensus        65 --~~~~~l-~~~~~D~V~i~t~~~~h~~~~~~al~~~~g-~~Vl~EKP~a  110 (376)
                        +.+++- .+.++|+|+-|||.....+.+.+.++  +| |-|++.-|..
T Consensus        76 ~~dp~~i~w~~~~vDvV~~atg~~~s~e~a~~~l~--~Gak~vVId~pa~  123 (334)
T 3cmc_O           76 ERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLE--AGAKKVIISAPAK  123 (334)
T ss_dssp             CSSGGGCCTGGGTCCEEEECSSSCCBHHHHTHHHH--TTCSEEEESSCCB
T ss_pred             cCChhhcCcccCccCEEEECCCchhhHHHHHHHHH--CCCCEEEEeCCCc
Confidence              344431 22268999999999999999999999  54 4588877754

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*

Probab=97.73  E-value=0.00015  Score=65.75  Aligned_cols=98  Identities=23%  Similarity=0.258  Sum_probs=65.7

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-------C--------------CccC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-------L--------------KVFP   64 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-------~--------------~~~~   64 (376)
                      ++||||+|.|.+|+..++.+..+  ++++|++|.|.....  ...-+. +|...       +              ..+.
T Consensus         1 ~ikVgI~G~G~iG~~l~R~l~~~--~~veiv~i~~~~~~~--~~a~l~-~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~   75 (330)
T 1gad_O            1 TIKVGINGFGRIGRIVFRAAQKR--SDIEIVAINDLLDAD--YMAYML-KYDSTHGRFDGTVEVKDGHLIVNGKKIRVTA   75 (330)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTC--SSEEEEEEECSSCHH--HHHHHH-HCCTTTCSCSSCEEEETTEEEETTEEEEEEC
T ss_pred             CeEEEEECcCHHHHHHHHHHHcC--CCeEEEEEcCCCChh--HHhHhh-cccccCCCCCCeEEEcCCEEEECCEEEEEEE
Confidence            48999999999999999999888  899999999974321  221111 22110       0              0121


Q ss_pred             --CHHHHh-hCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCC
Q 017143           65 --GHQELL-DSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPL  109 (376)
Q Consensus        65 --~~~~~l-~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~  109 (376)
                        +.+++- ...++|+|+-|||.....+.+.+.+++| -|-|.+--|+
T Consensus        76 ~~dp~~i~w~~~~vDvVf~atg~~~s~e~a~~~l~~G-akvVdlSa~~  122 (330)
T 1gad_O           76 ERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAG-AKKVVMTGPS  122 (330)
T ss_dssp             CSSGGGGCHHHHTCSEEEECSSSCCSHHHHTHHHHTT-CSEEEESSCC
T ss_pred             cCChhhCccccccCCEEEECCCccccHHHHHHHHHCC-CEEEEECCCC
Confidence              233331 1125899999999999999999999943 2446666555

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=97.73  E-value=3.1e-05  Score=66.21  Aligned_cols=68  Identities=24%  Similarity=0.278  Sum_probs=50.5

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      +++||+|||+|.+|..++..+.+.   +.+++ +++++++   +++++.+. |+.  .+ ++++++++  .|+|++++|+
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~---g~~V~-~~~r~~~---~~~~~~~~-g~~--~~-~~~~~~~~--~DvVi~av~~   93 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGS---GFKVV-VGSRNPK---RTARLFPS-AAQ--VT-FQEEAVSS--PEVIFVAVFR   93 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHT---TCCEE-EEESSHH---HHHHHSBT-TSE--EE-EHHHHTTS--CSEEEECSCG
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHC---CCEEE-EEeCCHH---HHHHHHHc-CCc--ee-cHHHHHhC--CCEEEECCCh
Confidence            357999999999999999888775   56755 6889887   44444433 543  43 78888865  8999999997


Q ss_pred             C
Q 017143           85 M   85 (376)
Q Consensus        85 ~   85 (376)
                      .
T Consensus        94 ~   94 (215)
T 2vns_A           94 E   94 (215)
T ss_dssp             G
T ss_pred             H
Confidence            5

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=97.73  E-value=0.00014  Score=69.66  Aligned_cols=71  Identities=20%  Similarity=0.167  Sum_probs=51.3

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc------CC-----------CCCccCCHHH
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF------DW-----------PLKVFPGHQE   68 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~------~~-----------~~~~~~~~~~   68 (376)
                      .+||+|||+|.+|......|++.   +.+|+ ++|+++++   .+++.+..      ++           .+...+|+++
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~---G~~V~-~~d~~~~~---v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~   80 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADI---GHDVF-CLDVDQAK---IDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEA   80 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT---TCEEE-EECSCHHH---HHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHH
T ss_pred             CceEEEECcCHHHHHHHHHHHhC---CCEEE-EEECCHHH---HHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHH
Confidence            58999999999999988888875   77866 57999884   44443321      10           0234567777


Q ss_pred             HhhCCCCCEEEEeCCCC
Q 017143           69 LLDSGLCDVVVVSTPNM   85 (376)
Q Consensus        69 ~l~~~~~D~V~i~t~~~   85 (376)
                      .+++  .|+|+||+|+.
T Consensus        81 a~~~--aDvviiaVptp   95 (478)
T 2y0c_A           81 AVAH--GDVQFIAVGTP   95 (478)
T ss_dssp             HHHH--CSEEEECCCCC
T ss_pred             Hhhc--CCEEEEEeCCC
Confidence            7766  89999999873

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=97.72  E-value=5.4e-05  Score=69.20  Aligned_cols=104  Identities=16%  Similarity=0.187  Sum_probs=67.7

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhC--CCCCEEEEeCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDS--GLCDVVVVSTP   83 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~D~V~i~t~   83 (376)
                      ..||+|||+|.||......+.+.   +.+|+ ++|+++++.+.    +.++|+.  .+++.++++++  .+.|+|++|+|
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~---G~~V~-~~dr~~~~~~~----a~~~G~~--~~~~~~e~~~~a~~~aDlVilavP   77 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAA---NHSVF-GYNRSRSGAKS----AVDEGFD--VSADLEATLQRAAAEDALIVLAVP   77 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHT---TCCEE-EECSCHHHHHH----HHHTTCC--EESCHHHHHHHHHHTTCEEEECSC
T ss_pred             CCEEEEEeecHHHHHHHHHHHHC---CCEEE-EEeCCHHHHHH----HHHcCCe--eeCCHHHHHHhcccCCCEEEEeCC
Confidence            47999999999999999888875   67765 68999874332    3456764  67889888864  24799999999


Q ss_pred             CCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHH
Q 017143           84 NMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVD  121 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~  121 (376)
                      +..-.+++.+......| .++++- .+....-.+++.+
T Consensus        78 ~~~~~~vl~~l~~~~~~-~iv~Dv-~Svk~~i~~~~~~  113 (341)
T 3ktd_A           78 MTAIDSLLDAVHTHAPN-NGFTDV-VSVKTAVYDAVKA  113 (341)
T ss_dssp             HHHHHHHHHHHHHHCTT-CCEEEC-CSCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCC-CEEEEc-CCCChHHHHHHHH
Confidence            76444444332221133 455553 2334444444443

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=97.70  E-value=6.9e-05  Score=68.63  Aligned_cols=94  Identities=15%  Similarity=0.176  Sum_probs=60.0

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcC-C-------CCCccCCHHHHhhCCCCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFD-W-------PLKVFPGHQELLDSGLCD   76 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~l~~~~~D   76 (376)
                      +++||+|||+|.||......|.+.   +.+|+ +++++++   +++.+.++.- .       .+..+++.++ +..  .|
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~~---G~~V~-~~~r~~~---~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~--aD   82 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHEN---GEEVI-LWARRKE---IVDLINVSHTSPYVEESKITVRATNDLEE-IKK--ED   82 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHT---TCEEE-EECSSHH---HHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCT--TE
T ss_pred             cCCcEEEECcCHHHHHHHHHHHhC---CCeEE-EEeCCHH---HHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcC--CC
Confidence            368999999999999988888775   66754 7899887   4555554420 0       1235677777 554  89


Q ss_pred             EEEEeCCCCccHHHHHHHHcCCCCCe-EEEecCCC
Q 017143           77 VVVVSTPNMTHYQILMDIINHPKPHH-VLVEKPLC  110 (376)
Q Consensus        77 ~V~i~t~~~~h~~~~~~al~~~~g~~-Vl~EKP~a  110 (376)
                      +|++++|+.. .+-+.+.+.. .++. |.+-|.+.
T Consensus        83 vVil~vk~~~-~~~v~~~l~~-~~~~vv~~~nGi~  115 (335)
T 1z82_A           83 ILVIAIPVQY-IREHLLRLPV-KPSMVLNLSKGIE  115 (335)
T ss_dssp             EEEECSCGGG-HHHHHTTCSS-CCSEEEECCCCCC
T ss_pred             EEEEECCHHH-HHHHHHHhCc-CCCEEEEEeCCCC
Confidence            9999999744 3333333431 2333 33455443

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=97.69  E-value=0.00011  Score=67.67  Aligned_cols=97  Identities=14%  Similarity=0.204  Sum_probs=64.1

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc-------CC--C--CCccCCHHHHhhCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF-------DW--P--LKVFPGHQELLDSGL   74 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~-------~~--~--~~~~~~~~~~l~~~~   74 (376)
                      ++||+|||+|.||......|.+.   +.+|+ +++++++.   ++++.+..       ++  +  +..++|+++++++  
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~---G~~V~-l~~r~~~~---~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~--   99 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARK---GQKVR-LWSYESDH---VDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEG--   99 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTT---TCCEE-EECSCHHH---HHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTT--
T ss_pred             CCeEEEECccHHHHHHHHHHHHC---CCeEE-EEeCCHHH---HHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhc--
Confidence            57999999999999988888775   66755 78999884   44444321       11  1  2345788888876  


Q ss_pred             CCEEEEeCCCCccHHHHHHHHcCC-CCCe-EEEecCCCC
Q 017143           75 CDVVVVSTPNMTHYQILMDIINHP-KPHH-VLVEKPLCT  111 (376)
Q Consensus        75 ~D~V~i~t~~~~h~~~~~~al~~~-~g~~-Vl~EKP~a~  111 (376)
                      .|+|++++|++.-.+.+.+....- .+.. |.+-|.+..
T Consensus       100 aDvVilaVp~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~  138 (356)
T 3k96_A          100 VTDILIVVPSFAFHEVITRMKPLIDAKTRIAWGTKGLAK  138 (356)
T ss_dssp             CCEEEECCCHHHHHHHHHHHGGGCCTTCEEEECCCSCBT
T ss_pred             CCEEEECCCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCc
Confidence            899999999875555554432210 3333 444665543

>3au8_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH binding; HET: NDP; 1.86A {Plasmodium falciparum} PDB: 3au9_A* 3aua_A*

Probab=97.65  E-value=0.0011  Score=61.17  Aligned_cols=217  Identities=13%  Similarity=0.105  Sum_probs=126.2

Q ss_pred             CCceeEEEEe-CChhhHHHHHHhhhhc--CCCcEEEEEeCCChhhHHHHHHHHHhcCCC-C-------------------
Q 017143            4 NDTVKYGIIG-MGMMGREHFINLHHLR--SQGVSVVCIADPHLQSRQQALKLANAFDWP-L-------------------   60 (376)
Q Consensus         4 ~~~~~v~iiG-~G~~g~~~~~~~~~~~--~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~-------------------   60 (376)
                      ++|.||.|+| +|.||..-+.-+++++  +..|+|+|++..+.  .+...+.+++|+-. +                   
T Consensus        75 ~~mk~I~ILGSTGSIGtqTLdVi~~~p~~pd~f~V~aLaAg~N--v~lL~eQ~~ef~P~~v~v~d~~~~~~L~~~l~~~~  152 (488)
T 3au8_A           75 KKPINVAIFGSTGSIGTNALNIIRECNKIENVFNVKALYVNKS--VNELYEQAREFLPEYLCIHDKSVYEELKELVKNIK  152 (488)
T ss_dssp             --CEEEEEETTTSHHHHHHHHHHHHHHHHSCCEEEEEEEESSC--HHHHHHHHHHHCCSEEEESCGGGTHHHHTGGGGST
T ss_pred             hcceEEEEEccCcHHHHHHHHHHHcccCCCCeEEEEEEEcCCC--HHHHHHHHHHcCCCEEEEcCHHHHHHHHHHhhhhc
Confidence            3457899999 5999999888888731  24699999886432  22455555555432 0                   


Q ss_pred             ----Ccc---CCHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHH-HHHHHHHHhCCCeEEE
Q 017143           61 ----KVF---PGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADC-KKVVDAARKRPDILVQ  132 (376)
Q Consensus        61 ----~~~---~~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~-~~l~~~a~~~~~~~~~  132 (376)
                          .++   +.+.++...+++|.|+.+..-..=....++|++  +||.|.+.--=  ++--+ .-+.+++++..+..+.
T Consensus       153 ~~~~~v~~G~egl~e~a~~~~~D~Vv~AIvG~aGL~PTlaAi~--aGK~IALANKE--SLV~aG~Lv~~~a~~~~g~~Il  228 (488)
T 3au8_A          153 DYKPIILCGDEGMKEICSSNSIDKIVIGIDSFQGLYSTMYAIM--NNKIVALANKE--SIVSAGFFLKKLLNIHKNAKII  228 (488)
T ss_dssp             TCCCEEEEHHHHHHHHHHCTTCCEEEECCCHHHHHHHHHHHHH--TTCEEEECCSH--HHHHHHHHHHHHHHHSTTCEEE
T ss_pred             CCCceEEeCHHHHHHHhcCCCCCEEEEccccHhHHHHHHHHHH--CCCcEEEecch--hhhhchHHHHHHHHhcCCCeEE
Confidence                011   113344445679999999988888889999999  89999875432  23333 3344555333155554


Q ss_pred             EeeccccCHHHHHHHHHHHcC-------------CCCceEEEEEeeccCCcccc---------------cCccccccccC
Q 017143          133 VGLEYRYMPPVAKLIQIVKSG-------------SIGQVKMVAIREHRFPFLVK---------------VNDWNRFNENT  184 (376)
Q Consensus       133 v~~~~r~~p~~~~~k~~i~~g-------------~iG~i~~~~~~~~~~~~~~~---------------~~~w~~~~~~~  184 (376)
                      .-     +.....+-|.+..+             ...+|..+..+-..+|+...               -++|..-.+-+
T Consensus       229 PV-----DSEHsAIFQcL~g~~~~~~~~~~~~~~~~~~V~kIiLTASGGPFR~~~~eeL~~VTpeqALkHPnWsMG~KIT  303 (488)
T 3au8_A          229 PV-----DSEHSAIFQCLDNNKVLKTKCLQDNFSKINNINKIFLCSSGGPFQNLTMDELKNVTSENALKHPKWKMGKKIT  303 (488)
T ss_dssp             EC-----SHHHHHHHHHSCHHHHTTSCTTCTTHHHHTTEEEEEEEECCCTTTTCCHHHHTTCCTTTC---------CHHH
T ss_pred             Ee-----chhHHHHHHHhcCCcccccccccccccccccccEEEEECCCcccCCCCHHHHhCCCHHHHhcCCCccCCceee
Confidence            32     33333444444321             11347777776566665431               24565433311


Q ss_pred             --CcccccccccHHHHHHHHhCCCCeEEEEecccccccCccccCCCCCcccccEEEEEEecCCcEE
Q 017143          185 --GGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENGSRG  248 (376)
Q Consensus       185 --gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~G~~~  248 (376)
                        +-.|++-|--.+. +.||||-++.++....+.                ....+.+++|.||.+.
T Consensus       304 IDSATMmNKGLEvIE-A~~LF~v~~d~IeVvVHP----------------QSIIHSmVef~DGSvi  352 (488)
T 3au8_A          304 IDSATMMNKGLEVIE-THFLFDVDYNDIEVIVHK----------------ECIIHSCVEFIDKSVI  352 (488)
T ss_dssp             HHHHSSHHHHHHHHH-HHHHHTCCGGGEEEEECT----------------TCCEEEEEEETTSCEE
T ss_pred             eehHhHhhhhHHHhH-HHHHcCCCHHHeEEEECC----------------CCceeEEEEEeCCcEE
Confidence              2234444433333 689999877777776543                2458899999999764

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=97.64  E-value=0.0005  Score=61.82  Aligned_cols=76  Identities=18%  Similarity=0.176  Sum_probs=53.8

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH-------hcCC----------------CCCc
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN-------AFDW----------------PLKV   62 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~-------~~~~----------------~~~~   62 (376)
                      +.||+|||+|.||......+...   +.+|+ ++|+++++++++.+..+       +.|.                .+..
T Consensus        15 ~~~I~VIG~G~mG~~iA~~la~~---G~~V~-~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~   90 (302)
T 1f0y_A           15 VKHVTVIGGGLMGAGIAQVAAAT---GHTVV-LVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT   90 (302)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT---TCEEE-EECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC---CCeEE-EEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEE
Confidence            46899999999999888888774   77866 78999886654422110       1121                0234


Q ss_pred             cCCHHHHhhCCCCCEEEEeCCCCcc
Q 017143           63 FPGHQELLDSGLCDVVVVSTPNMTH   87 (376)
Q Consensus        63 ~~~~~~~l~~~~~D~V~i~t~~~~h   87 (376)
                      .+++++.+++  .|+|++++|....
T Consensus        91 ~~~~~~~~~~--aD~Vi~avp~~~~  113 (302)
T 1f0y_A           91 STDAASVVHS--TDLVVEAIVENLK  113 (302)
T ss_dssp             ESCHHHHTTS--CSEEEECCCSCHH
T ss_pred             ecCHHHhhcC--CCEEEEcCcCcHH
Confidence            6788877765  8999999998753

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=97.61  E-value=5.4e-05  Score=64.39  Aligned_cols=77  Identities=18%  Similarity=0.351  Sum_probs=55.2

Q ss_pred             eeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcC-----CCCCccCCHHHHhhCCCCCEEEE
Q 017143            7 VKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFD-----WPLKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         7 ~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      +||+||| +|.+|...+..+.+.   +.+++ ++++++++   ++++.++++     .++. ++++++++++  .|+|++
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~---g~~V~-~~~r~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~D~Vi~   70 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATL---GHEIV-VGSRREEK---AEAKAAEYRRIAGDASIT-GMKNEDAAEA--CDIAVL   70 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTT---TCEEE-EEESSHHH---HHHHHHHHHHHHSSCCEE-EEEHHHHHHH--CSEEEE
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHC---CCEEE-EEeCCHHH---HHHHHHHhccccccCCCC-hhhHHHHHhc--CCEEEE
Confidence            4899999 999999988888775   67766 57888874   334443332     1122 4678888876  899999


Q ss_pred             eCCCCccHHHHHH
Q 017143           81 STPNMTHYQILMD   93 (376)
Q Consensus        81 ~t~~~~h~~~~~~   93 (376)
                      ++|+..+.+++.+
T Consensus        71 ~~~~~~~~~~~~~   83 (212)
T 1jay_A           71 TIPWEHAIDTARD   83 (212)
T ss_dssp             CSCHHHHHHHHHH
T ss_pred             eCChhhHHHHHHH
Confidence            9998776665544

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=97.60  E-value=7.8e-05  Score=57.28  Aligned_cols=103  Identities=10%  Similarity=0.034  Sum_probs=73.4

Q ss_pred             CceeEEEEeCC----hhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEE
Q 017143            5 DTVKYGIIGMG----MMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         5 ~~~~v~iiG~G----~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      ++-+|+|||+.    ..|...+..|.+.   +++++.| .+..+         +-.|.+  .|.|+.++-+   +|+|+|
T Consensus         3 ~p~siAVVGaS~~~~~~g~~v~~~L~~~---g~~V~pV-nP~~~---------~i~G~~--~y~sl~dlp~---vDlavi   64 (122)
T 3ff4_A            3 AMKKTLILGATPETNRYAYLAAERLKSH---GHEFIPV-GRKKG---------EVLGKT--IINERPVIEG---VDTVTL   64 (122)
T ss_dssp             CCCCEEEETCCSCTTSHHHHHHHHHHHH---TCCEEEE-SSSCS---------EETTEE--CBCSCCCCTT---CCEEEE
T ss_pred             CCCEEEEEccCCCCCCHHHHHHHHHHHC---CCeEEEE-CCCCC---------cCCCee--ccCChHHCCC---CCEEEE
Confidence            46789999984    4677777778776   6787765 44322         124654  8999888753   899999


Q ss_pred             eCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEE
Q 017143           81 STPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQ  132 (376)
Q Consensus        81 ~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~  132 (376)
                      ++|+..-.+++.+|.+  .|...++=-|...+    +++.+.|++ +|+.+.
T Consensus        65 ~~p~~~v~~~v~e~~~--~g~k~v~~~~G~~~----~e~~~~a~~-~Girvv  109 (122)
T 3ff4_A           65 YINPQNQLSEYNYILS--LKPKRVIFNPGTEN----EELEEILSE-NGIEPV  109 (122)
T ss_dssp             CSCHHHHGGGHHHHHH--HCCSEEEECTTCCC----HHHHHHHHH-TTCEEE
T ss_pred             EeCHHHHHHHHHHHHh--cCCCEEEECCCCCh----HHHHHHHHH-cCCeEE
Confidence            9999999999999998  44333444455443    578888844 588876

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=97.59  E-value=0.00016  Score=66.45  Aligned_cols=104  Identities=19%  Similarity=0.206  Sum_probs=67.8

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCC-ChhhHHHHHHHHHhcCC-----------------CCCc--cCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADP-HLQSRQQALKLANAFDW-----------------PLKV--FPG   65 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~-~~~~~~~~~~~~~~~~~-----------------~~~~--~~~   65 (376)
                      ++||||+|+|.+|+..++.+.....++++|++|.|+ +++......+.-+.+|-                 ++.+  ..+
T Consensus         2 ~ikVgInGfGrIGr~vlR~l~~~~~~~veIVaInd~~d~~~~a~ll~yds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~d   81 (380)
T 2d2i_A            2 TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRN   81 (380)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCSC
T ss_pred             CcEEEEECcCHHHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHHhhcccccCCCCCCcEEEeCCeEEECCeEEEEEecCC
Confidence            489999999999999988876542268999999997 33321111111111210                 0111  124


Q ss_pred             HHHHhh-CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCC
Q 017143           66 HQELLD-SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLC  110 (376)
Q Consensus        66 ~~~~l~-~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a  110 (376)
                      .+++.. +.++|+|+-||+...-.+.+.+.|++| -|-|++.-|..
T Consensus        82 p~~l~w~~~gvDvV~e~TG~f~s~e~a~~hl~aG-akkVVIs~ps~  126 (380)
T 2d2i_A           82 PLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAG-AKKVLITAPGK  126 (380)
T ss_dssp             GGGCCHHHHTCCEEEECSSSCCBHHHHHHHHHTT-CSEEEESSCCB
T ss_pred             hHHCCcccCCCCEEEECCCccccHHHHHHHHHcC-CcEEEEcCCCC
Confidence            444421 125899999999999999999999954 25577777654

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=97.57  E-value=0.00023  Score=66.79  Aligned_cols=75  Identities=25%  Similarity=0.281  Sum_probs=56.5

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ..+|+|||+|.+|...+..+...   +..-+.+++++++   +++++++++|..+..++++++++..  .|+|+.+||..
T Consensus       167 g~~VlIiGaG~iG~~~a~~l~~~---G~~~V~v~~r~~~---ra~~la~~~g~~~~~~~~l~~~l~~--aDvVi~at~~~  238 (404)
T 1gpj_A          167 DKTVLVVGAGEMGKTVAKSLVDR---GVRAVLVANRTYE---RAVELARDLGGEAVRFDELVDHLAR--SDVVVSATAAP  238 (404)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHH---CCSEEEEECSSHH---HHHHHHHHHTCEECCGGGHHHHHHT--CSEEEECCSSS
T ss_pred             CCEEEEEChHHHHHHHHHHHHHC---CCCEEEEEeCCHH---HHHHHHHHcCCceecHHhHHHHhcC--CCEEEEccCCC
Confidence            46899999999999988888876   6633447899887   5666777777542234677888865  89999999976


Q ss_pred             ccH
Q 017143           86 THY   88 (376)
Q Consensus        86 ~h~   88 (376)
                      .+.
T Consensus       239 ~~~  241 (404)
T 1gpj_A          239 HPV  241 (404)
T ss_dssp             SCC
T ss_pred             Cce
Confidence            553

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=97.57  E-value=6.5e-05  Score=69.50  Aligned_cols=146  Identities=17%  Similarity=0.179  Sum_probs=86.0

Q ss_pred             CCceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEe-CCChhhHHHHHHHHHhcCC------C----CCccCCHHH--H
Q 017143            4 NDTVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIA-DPHLQSRQQALKLANAFDW------P----LKVFPGHQE--L   69 (376)
Q Consensus         4 ~~~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~-d~~~~~~~~~~~~~~~~~~------~----~~~~~~~~~--~   69 (376)
                      |+++|||||| +|..|...+..|.++  |.++|+.++ +++..    .+.+..-+.+      |    -..+.+.+.  .
T Consensus        17 M~~~kVaIvGAtG~vG~ell~lL~~h--p~~el~~l~aS~~sa----Gk~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~   90 (381)
T 3hsk_A           17 MSVKKAGVLGATGSVGQRFILLLSKH--PEFEIHALGASSRSA----GKKYKDAASWKQTETLPETEQDIVVQECKPEGN   90 (381)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTC--SSEEEEEEEECTTTT----TSBHHHHCCCCCSSCCCHHHHTCBCEESSSCTT
T ss_pred             CCccEEEEECCCChHHHHHHHHHHcC--CCceEEEeecccccc----CCCHHHhcccccccccccccccceEEeCchhhh
Confidence            5679999999 699999999999988  899999886 33221    2222221111      0    011222211  2


Q ss_pred             hhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEE-ecCCCC-----------CH--HHHHHHHHHHH----hCCCeEE
Q 017143           70 LDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLV-EKPLCT-----------TV--ADCKKVVDAAR----KRPDILV  131 (376)
Q Consensus        70 l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~-EKP~a~-----------~~--~e~~~l~~~a~----~~~~~~~  131 (376)
                      ++  ++|+|+.|+|+....+++.++++  +|..|+- -.++-.           +.  -..-|+.+...    .-.+-.+
T Consensus        91 ~~--~~Dvvf~alp~~~s~~~~~~~~~--~G~~VIDlSa~fR~~~~vplvv~~vn~~~~~l~E~~r~~~~~~~~i~~~~i  166 (381)
T 3hsk_A           91 FL--ECDVVFSGLDADVAGDIEKSFVE--AGLAVVSNAKNYRREKDVPLVVPIVNPEHIDVVENKVKQAVSKGGKKPGFI  166 (381)
T ss_dssp             GG--GCSEEEECCCHHHHHHHHHHHHH--TTCEEEECCSTTTTCTTSCEECTTTCGGGGHHHHHHHHHHHHTTCCCCCEE
T ss_pred             cc--cCCEEEECCChhHHHHHHHHHHh--CCCEEEEcCCcccCCCCCcEEecccCHHHcCCHhhhhhhhcccccccCCcE
Confidence            33  48999999999999999999999  7766553 111111           11  12223332220    0123345


Q ss_pred             EEeeccccCHHHHHHHHHHHc-CCCCceE
Q 017143          132 QVGLEYRYMPPVAKLIQIVKS-GSIGQVK  159 (376)
Q Consensus       132 ~v~~~~r~~p~~~~~k~~i~~-g~iG~i~  159 (376)
                      ..+-++.-.-....++-+++. |.|-++.
T Consensus       167 IaNPgC~tt~~~laL~PL~~~~glI~~v~  195 (381)
T 3hsk_A          167 ICISNCSTAGLVAPLKPLVEKFGPIDALT  195 (381)
T ss_dssp             EEECCHHHHHHHHHHHHHHHHHCCEEEEE
T ss_pred             EECCCcHHHHHHHHHHHHHHhcCCceEEE
Confidence            566666556667777878875 6565443

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=97.56  E-value=8.4e-05  Score=67.67  Aligned_cols=141  Identities=11%  Similarity=0.109  Sum_probs=85.0

Q ss_pred             ceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc----CC-CCCccC--CHHHHhhCCCCCE
Q 017143            6 TVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF----DW-PLKVFP--GHQELLDSGLCDV   77 (376)
Q Consensus         6 ~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~----~~-~~~~~~--~~~~~l~~~~~D~   77 (376)
                      |+||+|+| +|.+|...+..|.++  ++++++++..++..+. ..+.+.+-|    +. +..+.+  +.+++++  ++|+
T Consensus         4 M~kv~IvGatG~vG~~l~~~L~~~--p~~el~~l~s~~~~~s-aGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~--~~Dv   78 (337)
T 3dr3_A            4 MLNTLIVGASGYAGAELVTYVNRH--PHMNITALTVSAQSND-AGKLISDLHPQLKGIVELPLQPMSDISEFSP--GVDV   78 (337)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHC--TTEEEEEEEEETTCTT-TTSBHHHHCGGGTTTCCCBEEEESSGGGTCT--TCSE
T ss_pred             ceEEEEECCCChHHHHHHHHHHhC--CCCcEEEEEecCchhh-cCCchHHhCccccCccceeEeccCCHHHHhc--CCCE
Confidence            58999999 599999999999888  8999999987651100 122222111    21 111111  3444443  4999


Q ss_pred             EEEeCCCCccHHHHHHHHcCCCCCeEEE-ecCCCC-CHHHHH----------HHH------------HHHHhCCCeEEEE
Q 017143           78 VVVSTPNMTHYQILMDIINHPKPHHVLV-EKPLCT-TVADCK----------KVV------------DAARKRPDILVQV  133 (376)
Q Consensus        78 V~i~t~~~~h~~~~~~al~~~~g~~Vl~-EKP~a~-~~~e~~----------~l~------------~~a~~~~~~~~~v  133 (376)
                      |+.|+|+..-.+++.++++  +|.-|+- --++-. +.+...          +|.            +.. +..  .+.-
T Consensus        79 vf~a~p~~~s~~~~~~~~~--~g~~vIDlSa~fR~~d~~v~~~wy~~~~~~p~l~~~~vyglPEvn~~~i-~~~--~iIa  153 (337)
T 3dr3_A           79 VFLATAHEVSHDLAPQFLE--AGCVVFDLSGAFRVNDATFYEKYYGFTHQYPELLEQAAYGLAEWCGNKL-KEA--NLIA  153 (337)
T ss_dssp             EEECSCHHHHHHHHHHHHH--TTCEEEECSSTTSSSCHHHHHHHTSSCCSCHHHHHHCEECCTTTCCHHH-HTC--SEEE
T ss_pred             EEECCChHHHHHHHHHHHH--CCCEEEEcCCccccCCcccchhhccccccChhhhcceEEEccccCHHHh-CCC--CEEe
Confidence            9999999988999999999  6765543 333323 322111          111            111 221  2444


Q ss_pred             eeccccCHHHHHHHHHHHcCCCC
Q 017143          134 GLEYRYMPPVAKLIQIVKSGSIG  156 (376)
Q Consensus       134 ~~~~r~~p~~~~~k~~i~~g~iG  156 (376)
                      +.++.-.-....++-+.+.|.+|
T Consensus       154 nPgC~tt~~~l~L~PL~~~g~~~  176 (337)
T 3dr3_A          154 VPGCYPTAAQLALKPLIDADLLD  176 (337)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCBC
T ss_pred             cCChHHHHHHHHHHHHHHcCccC
Confidence            44444455566777788888776

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=97.55  E-value=0.00031  Score=64.06  Aligned_cols=79  Identities=18%  Similarity=0.237  Sum_probs=55.2

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCC--ChhhHHHHHHHHHhc-----CC--C-CCccC--CHHHHhhCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADP--HLQSRQQALKLANAF-----DW--P-LKVFP--GHQELLDSGL   74 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~--~~~~~~~~~~~~~~~-----~~--~-~~~~~--~~~~~l~~~~   74 (376)
                      +||+|||+|.+|..+...|.+.   +.+|+ ++++  +++   +.+.+.++.     |+  . +..++  +.++++.+  
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~---g~~V~-~~~r~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--   71 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDN---GNEVR-IWGTEFDTE---ILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLEN--   71 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHH---CCEEE-EECCGGGHH---HHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTT--
T ss_pred             CEEEEECcCHHHHHHHHHHHhC---CCeEE-EEEccCCHH---HHHHHHHhCcCcccCccccceEEecHHhHHHHHhc--
Confidence            4899999999999988888775   56755 6788  776   344444332     11  0 12345  67777765  


Q ss_pred             CCEEEEeCCCCccHHHHHHH
Q 017143           75 CDVVVVSTPNMTHYQILMDI   94 (376)
Q Consensus        75 ~D~V~i~t~~~~h~~~~~~a   94 (376)
                      .|+|++++|+..+.+++...
T Consensus        72 ~D~vi~~v~~~~~~~v~~~i   91 (335)
T 1txg_A           72 AEVVLLGVSTDGVLPVMSRI   91 (335)
T ss_dssp             CSEEEECSCGGGHHHHHHHH
T ss_pred             CCEEEEcCChHHHHHHHHHH
Confidence            89999999998776665544

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=97.53  E-value=0.00014  Score=65.68  Aligned_cols=81  Identities=20%  Similarity=0.204  Sum_probs=52.3

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCC----------ccCCHHHHhhC-CC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLK----------VFPGHQELLDS-GL   74 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~-~~   74 (376)
                      ++||+|||+|.+|......|.+.   +.+|+ ++++++++   .+++.++ |+.+.          .+.+.+++.+. .+
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~---g~~V~-~~~r~~~~---~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (316)
T 2ew2_A            3 AMKIAIAGAGAMGSRLGIMLHQG---GNDVT-LIDQWPAH---IEAIRKN-GLIADFNGEEVVANLPIFSPEEIDHQNEQ   74 (316)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHT---TCEEE-EECSCHHH---HHHHHHH-CEEEEETTEEEEECCCEECGGGCCTTSCC
T ss_pred             CCeEEEECcCHHHHHHHHHHHhC---CCcEE-EEECCHHH---HHHHHhC-CEEEEeCCCeeEecceeecchhhcccCCC
Confidence            47999999999999988888775   66765 67998874   4444433 32100          01133344331 24


Q ss_pred             CCEEEEeCCCCccHHHHHHH
Q 017143           75 CDVVVVSTPNMTHYQILMDI   94 (376)
Q Consensus        75 ~D~V~i~t~~~~h~~~~~~a   94 (376)
                      .|+|++++|+....+.+...
T Consensus        75 ~d~vi~~v~~~~~~~v~~~l   94 (316)
T 2ew2_A           75 VDLIIALTKAQQLDAMFKAI   94 (316)
T ss_dssp             CSEEEECSCHHHHHHHHHHH
T ss_pred             CCEEEEEeccccHHHHHHHH
Confidence            89999999987666655544

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=97.52  E-value=0.00032  Score=64.59  Aligned_cols=85  Identities=13%  Similarity=0.103  Sum_probs=55.4

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhhcCCC-------cEEEEEeCCChh-----hHHHHHHHHH--hc--C--CC--CCcc
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHLRSQG-------VSVVCIADPHLQ-----SRQQALKLAN--AF--D--WP--LKVF   63 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~-------~~~~~v~d~~~~-----~~~~~~~~~~--~~--~--~~--~~~~   63 (376)
                      |.++||+|||+|.||......+.+.   +       .+| .+++++++     ..+...+...  .+  +  ++  +..+
T Consensus         6 m~~mkI~iIG~G~mG~~~a~~l~~~---g~~~~~~~~~V-~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   81 (354)
T 1x0v_A            6 MASKKVCIVGSGNWGSAIAKIVGGN---AAQLAQFDPRV-TMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAV   81 (354)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHH---HHHCTTEEEEE-EEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEE
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHhc---CCcccCCCCeE-EEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEE
Confidence            3457999999999999888888765   3       554 57888876     4333322100  01  1  11  2345


Q ss_pred             CCHHHHhhCCCCCEEEEeCCCCccHHHHHHH
Q 017143           64 PGHQELLDSGLCDVVVVSTPNMTHYQILMDI   94 (376)
Q Consensus        64 ~~~~~~l~~~~~D~V~i~t~~~~h~~~~~~a   94 (376)
                      ++.++++.+  .|+|++++|+....+++.+.
T Consensus        82 ~~~~~~~~~--aD~Vilav~~~~~~~v~~~i  110 (354)
T 1x0v_A           82 PDVVQAAED--ADILIFVVPHQFIGKICDQL  110 (354)
T ss_dssp             SSHHHHHTT--CSEEEECCCGGGHHHHHHHH
T ss_pred             cCHHHHHcC--CCEEEEeCCHHHHHHHHHHH
Confidence            788888865  89999999987655555443

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=97.50  E-value=0.00084  Score=63.20  Aligned_cols=123  Identities=17%  Similarity=0.168  Sum_probs=72.0

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHH------------HH----HhcCCCCCccCCHHH
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALK------------LA----NAFDWPLKVFPGHQE   68 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~------------~~----~~~~~~~~~~~~~~~   68 (376)
                      .+-+|+|||+|.+|......++..   +++|++ +|.++++.+...+            +.    +.-.  .+..++.++
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~---G~~V~g-~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~--l~~tt~~~~   93 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALL---GHRVVG-YDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGR--LSFAESAEE   93 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHH---TCEEEE-ECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTC--EEECSSHHH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhC---CCcEEE-EECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCC--eeEEcCHHH
Confidence            357999999999999888888876   889886 6999985543321            11    1111  234567788


Q ss_pred             HhhCCCCCEEEEeCCCCc---------cHHHHH----HHHcCC-CCCeEEEec--CCCCCHHHHHHHHHHHHhCCCeEEE
Q 017143           69 LLDSGLCDVVVVSTPNMT---------HYQILM----DIINHP-KPHHVLVEK--PLCTTVADCKKVVDAARKRPDILVQ  132 (376)
Q Consensus        69 ~l~~~~~D~V~i~t~~~~---------h~~~~~----~al~~~-~g~~Vl~EK--P~a~~~~e~~~l~~~a~~~~~~~~~  132 (376)
                      .+..  .|+++||.|+..         +.+-+.    +.|+.+ .|.-|..|-  |..++.+-...+++..  .++..+.
T Consensus        94 ai~~--ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~--~~~~~f~  169 (444)
T 3vtf_A           94 AVAA--TDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEE--AGGVKFS  169 (444)
T ss_dssp             HHHT--SSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTT--TTTCCCE
T ss_pred             HHhc--CCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHh--CCCCCce
Confidence            7776  688888876432         122222    234311 233344443  5555554444444332  3466666


Q ss_pred             Eeecc
Q 017143          133 VGLEY  137 (376)
Q Consensus       133 v~~~~  137 (376)
                      ++++.
T Consensus       170 v~~~P  174 (444)
T 3vtf_A          170 VASNP  174 (444)
T ss_dssp             EEECC
T ss_pred             eecCc
Confidence            66653

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=97.50  E-value=0.00038  Score=66.45  Aligned_cols=75  Identities=15%  Similarity=0.161  Sum_probs=50.3

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCc-EEEEEeCCChh----hHHHHHH--------------HHH---hcCCCCCc
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGV-SVVCIADPHLQ----SRQQALK--------------LAN---AFDWPLKV   62 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~-~~~~v~d~~~~----~~~~~~~--------------~~~---~~~~~~~~   62 (376)
                      +.+||+|||+|.+|......+++.  ++. +|+ ++|++++    +.+...+              +.+   ..+- +..
T Consensus        17 ~~mkIaVIGlG~mG~~lA~~la~~--~G~~~V~-~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~-l~~   92 (478)
T 3g79_A           17 PIKKIGVLGMGYVGIPAAVLFADA--PCFEKVL-GFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGK-FEC   92 (478)
T ss_dssp             SCCEEEEECCSTTHHHHHHHHHHS--TTCCEEE-EECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTC-EEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHh--CCCCeEE-EEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCC-eEE
Confidence            457999999999999988888775  478 877 5899987    5443321              000   0110 123


Q ss_pred             cCCHHHHhhCCCCCEEEEeCCCCc
Q 017143           63 FPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus        63 ~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      .++ .+.+++  .|+|++|.|+..
T Consensus        93 ttd-~ea~~~--aDvViiaVptp~  113 (478)
T 3g79_A           93 TPD-FSRISE--LDAVTLAIQTPF  113 (478)
T ss_dssp             ESC-GGGGGG--CSEEEECCCCCC
T ss_pred             eCc-HHHHhc--CCEEEEecCCch
Confidence            455 456655  899999999764

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1

Probab=97.50  E-value=8.4e-05  Score=70.86  Aligned_cols=109  Identities=17%  Similarity=0.169  Sum_probs=79.8

Q ss_pred             CceeEEEEeCC----hhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEE
Q 017143            5 DTVKYGIIGMG----MMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         5 ~~~~v~iiG~G----~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      ++-+|+|||++    .+|..|+..+.+.  ....|+. +++...         +-+|++  +|.|++++.+.  +|+++|
T Consensus         7 ~p~siAVvGas~~~~~~g~~v~~~l~~~--g~~~v~p-VnP~~~---------~i~G~~--~y~sl~~lp~~--~Dlavi   70 (457)
T 2csu_A            7 NPKGIAVIGASNDPKKLGYEVFKNLKEY--KKGKVYP-VNIKEE---------EVQGVK--AYKSVKDIPDE--IDLAII   70 (457)
T ss_dssp             SCSEEEEETCCSCTTSHHHHHHHHHTTC--CSSEEEE-ECSSCS---------EETTEE--CBSSTTSCSSC--CSEEEE
T ss_pred             CCCeEEEECcCCCCCchHHHHHHHHHHc--CCCEEEE-ECCCCC---------eECCEe--ccCCHHHcCCC--CCEEEE
Confidence            46789999997    5788998888775  3455544 455422         124765  99999998763  999999


Q ss_pred             eCCCCccHHHHHHHHcCCCCCeEEEecCCCCC--H----HHHHHHHHHHHhCCCeEEE
Q 017143           81 STPNMTHYQILMDIINHPKPHHVLVEKPLCTT--V----ADCKKVVDAARKRPDILVQ  132 (376)
Q Consensus        81 ~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~--~----~e~~~l~~~a~~~~~~~~~  132 (376)
                      ++|+..+.+.+.+|++  +|...++-.+-...  -    +..+++.+.+++ +|+.+.
T Consensus        71 ~vp~~~~~~~v~e~~~--~Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~-~g~~vi  125 (457)
T 2csu_A           71 VVPKRFVKDTLIQCGE--KGVKGVVIITAGFGETGEEGKREEKELVEIAHK-YGMRII  125 (457)
T ss_dssp             CSCHHHHHHHHHHHHH--HTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHH-HTCEEE
T ss_pred             ecCHHHHHHHHHHHHH--cCCCEEEEecCCCCccccccHHHHHHHHHHHHH-cCCEEE
Confidence            9999999999999999  77776666664332  1    226788888854 476655

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.48  E-value=8.9e-05  Score=66.59  Aligned_cols=119  Identities=16%  Similarity=0.179  Sum_probs=74.2

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC-Cc--cCCHHHHhhCCCCCEEEEeC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL-KV--FPGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~l~~~~~D~V~i~t   82 (376)
                      ..+++|||+|.+|+..+..|...   ++.-+.|++|+++   ++++++++++... ..  ++++.+.+..  .|+|+.+|
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~~---G~~~V~v~nR~~~---ka~~la~~~~~~~~~~~~~~~~~~~~~~--aDivIn~t  212 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLST---AAERIDMANRTVE---KAERLVREGDERRSAYFSLAEAETRLAE--YDIIINTT  212 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTT---TCSEEEEECSSHH---HHHHHHHHSCSSSCCEECHHHHHHTGGG--CSEEEECS
T ss_pred             CCEEEEECcHHHHHHHHHHHHHC---CCCEEEEEeCCHH---HHHHHHHHhhhccCceeeHHHHHhhhcc--CCEEEECC
Confidence            45899999999999998888875   6633458999987   6778887765310 12  1234444544  89999999


Q ss_pred             CCCccHH-----HHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeecccc
Q 017143           83 PNMTHYQ-----ILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRY  139 (376)
Q Consensus        83 ~~~~h~~-----~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~  139 (376)
                      |...+..     +....++  .|. ++++=  ..++.+. +|.+.++++ |..+.-|.....
T Consensus       213 ~~~~~~~~~~~~i~~~~l~--~~~-~v~D~--~y~P~~T-~ll~~A~~~-G~~~v~Gl~MLv  267 (297)
T 2egg_A          213 SVGMHPRVEVQPLSLERLR--PGV-IVSDI--IYNPLET-KWLKEAKAR-GARVQNGVGMLV  267 (297)
T ss_dssp             CTTCSSCCSCCSSCCTTCC--TTC-EEEEC--CCSSSSC-HHHHHHHHT-TCEEECSHHHHH
T ss_pred             CCCCCCCCCCCCCCHHHcC--CCC-EEEEc--CCCCCCC-HHHHHHHHC-cCEEECCHHHHH
Confidence            9876521     1223455  444 34432  2222233 266777454 777766654433

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=97.47  E-value=0.00019  Score=65.10  Aligned_cols=102  Identities=21%  Similarity=0.249  Sum_probs=66.7

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCC-ChhhHHHHHHHHHhcCC-----------------CCCccC--CH
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADP-HLQSRQQALKLANAFDW-----------------PLKVFP--GH   66 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~-~~~~~~~~~~~~~~~~~-----------------~~~~~~--~~   66 (376)
                      +||||+|.|.+|+..++.+..+..++++|++|.|. +++......+.-+.+|-                 ++.++.  +.
T Consensus         1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~dp   80 (332)
T 1hdg_O            1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPDP   80 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEcCCChHHhhhhccCcCcCCCcCCcEEEcCCEEEECCeEEEEEecCCh
Confidence            58999999999999998887652368999999996 33321111111122221                 111221  33


Q ss_pred             HHHh-hCCCCCEEEEeCCCCccHHHHHHHHcCCCC-CeEEEecCCC
Q 017143           67 QELL-DSGLCDVVVVSTPNMTHYQILMDIINHPKP-HHVLVEKPLC  110 (376)
Q Consensus        67 ~~~l-~~~~~D~V~i~t~~~~h~~~~~~al~~~~g-~~Vl~EKP~a  110 (376)
                      +++- .+.++|+|+-|||...-.+.+.+.++  +| |-|++.-|..
T Consensus        81 ~~l~w~~~~vDvV~~atg~~~s~e~a~~~l~--aGakkvVId~~a~  124 (332)
T 1hdg_O           81 SKLPWKDLGVDFVIESTGVFRNREKAELHLQ--AGAKKVIITAPAK  124 (332)
T ss_dssp             GGSCHHHHTCCEEEECSSSCCBHHHHTHHHH--TTCSEEEESSCCB
T ss_pred             HHCcccccCCCEEEECCccchhHHHHHHHHH--cCCcEEEEeCCCC
Confidence            3331 21258999999999999999999999  55 3477777654

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=97.45  E-value=0.00014  Score=68.47  Aligned_cols=81  Identities=16%  Similarity=0.163  Sum_probs=57.4

Q ss_pred             eeEEEEeCChhhHHHHHHhhhh---cCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC--CccCCHHHHhhCCCCCEEEEe
Q 017143            7 VKYGIIGMGMMGREHFINLHHL---RSQGVSVVCIADPHLQSRQQALKLANAFDWPL--KVFPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~---~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~D~V~i~   81 (376)
                      .||||||+|.+|..++..|++.   ...+++++...++++.    ..+.+.+.|+..  ....+.+++++.  .|+|+++
T Consensus        55 KkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sk----s~e~A~e~G~~v~d~ta~s~aEAa~~--ADVVILa  128 (525)
T 3fr7_A           55 KQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSK----SFDEARAAGFTEESGTLGDIWETVSG--SDLVLLL  128 (525)
T ss_dssp             SEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCS----CHHHHHHTTCCTTTTCEEEHHHHHHH--CSEEEEC
T ss_pred             CEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchh----hHHHHHHCCCEEecCCCCCHHHHHhc--CCEEEEC
Confidence            5899999999999999888774   1126777644444433    333455667651  123688999987  8999999


Q ss_pred             CCCCccHHHHHH
Q 017143           82 TPNMTHYQILMD   93 (376)
Q Consensus        82 t~~~~h~~~~~~   93 (376)
                      +|+..+.++..+
T Consensus       129 VP~~~~~eVl~e  140 (525)
T 3fr7_A          129 ISDAAQADNYEK  140 (525)
T ss_dssp             SCHHHHHHHHHH
T ss_pred             CChHHHHHHHHH
Confidence            999888766544

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=97.44  E-value=0.00082  Score=63.09  Aligned_cols=99  Identities=18%  Similarity=0.139  Sum_probs=64.7

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeC---CChhhHHHHHHHHHhcC---------C-------CCC-ccCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIAD---PHLQSRQQALKLANAFD---------W-------PLK-VFPG   65 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d---~~~~~~~~~~~~~~~~~---------~-------~~~-~~~~   65 (376)
                      ++||+|||+|.+|......|+..  .+.+|+ +++   ++++   ..+++.++.+         -       .+. .+++
T Consensus         2 ~mkI~ViGaG~~G~~~a~~La~~--~G~~V~-~~~~~~r~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   75 (404)
T 3c7a_A            2 TVKVCVCGGGNGAHTLSGLAASR--DGVEVR-VLTLFADEAE---RWTKALGADELTVIVNEKDGTQTEVKSRPKVITKD   75 (404)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTS--TTEEEE-EECCSTTHHH---HHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESC
T ss_pred             CceEEEECCCHHHHHHHHHHHhC--CCCEEE-EEeCCCCcHH---HHHHHHhhccceeeeecCCCccceeeccceEEeCC
Confidence            37999999999999988888663  367766 677   6555   3444222222         0       112 5578


Q ss_pred             HHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCC
Q 017143           66 HQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTT  112 (376)
Q Consensus        66 ~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~  112 (376)
                      .++++..  .|+|++++|+..+.+.+.+....-....+++-.+.+..
T Consensus        76 ~~~a~~~--aD~Vilav~~~~~~~v~~~l~~~l~~~~ivv~~~~~~G  120 (404)
T 3c7a_A           76 PEIAISG--ADVVILTVPAFAHEGYFQAMAPYVQDSALIVGLPSQAG  120 (404)
T ss_dssp             HHHHHTT--CSEEEECSCGGGHHHHHHHHTTTCCTTCEEEETTCCTT
T ss_pred             HHHHhCC--CCEEEEeCchHHHHHHHHHHHhhCCCCcEEEEcCCCcc
Confidence            8888765  89999999999887776654331111246666665554

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.43  E-value=0.0003  Score=55.43  Aligned_cols=95  Identities=15%  Similarity=0.147  Sum_probs=55.0

Q ss_pred             CCCCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc---CCHHHHhh--CCCC
Q 017143            1 MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF---PGHQELLD--SGLC   75 (376)
Q Consensus         1 m~~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~--~~~~   75 (376)
                      |+..++.+|.|+|+|.+|...+..|.+.   +.+++ ++|+++++   .+.+.+ .++. ..+   ++.+.+-+  -.+.
T Consensus         1 m~~~~~~~v~I~G~G~iG~~la~~L~~~---g~~V~-~id~~~~~---~~~~~~-~~~~-~~~gd~~~~~~l~~~~~~~~   71 (141)
T 3llv_A            1 MTENGRYEYIVIGSEAAGVGLVRELTAA---GKKVL-AVDKSKEK---IELLED-EGFD-AVIADPTDESFYRSLDLEGV   71 (141)
T ss_dssp             -----CCSEEEECCSHHHHHHHHHHHHT---TCCEE-EEESCHHH---HHHHHH-TTCE-EEECCTTCHHHHHHSCCTTC
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHC---CCeEE-EEECCHHH---HHHHHH-CCCc-EEECCCCCHHHHHhCCcccC
Confidence            5544567899999999999988888875   77876 56888874   444433 3443 111   23332222  2358


Q ss_pred             CEEEEeCCCCccHHHHHHHH-cCCCCCeEEE
Q 017143           76 DVVVVSTPNMTHYQILMDII-NHPKPHHVLV  105 (376)
Q Consensus        76 D~V~i~t~~~~h~~~~~~al-~~~~g~~Vl~  105 (376)
                      |+|++++|+...-..+...+ +.+ ...|++
T Consensus        72 d~vi~~~~~~~~n~~~~~~a~~~~-~~~iia  101 (141)
T 3llv_A           72 SAVLITGSDDEFNLKILKALRSVS-DVYAIV  101 (141)
T ss_dssp             SEEEECCSCHHHHHHHHHHHHHHC-CCCEEE
T ss_pred             CEEEEecCCHHHHHHHHHHHHHhC-CceEEE
Confidence            99999999654433333333 322 344554

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*

Probab=97.40  E-value=0.00062  Score=61.74  Aligned_cols=102  Identities=23%  Similarity=0.209  Sum_probs=66.9

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH---hcCCC------------------CCcc-
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN---AFDWP------------------LKVF-   63 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~---~~~~~------------------~~~~-   63 (376)
                      ++||||+|.|.+|+..++.+.....|.++|++|.|....  +....+.+   .+|-.                  +.++ 
T Consensus         1 ~ikVgInG~G~IGr~llR~l~~~~~p~~eivaInd~~~~--~~~a~ll~sds~~G~~~~~v~~~~~~~l~v~g~~i~v~~   78 (337)
T 1rm4_O            1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGV--KQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVS   78 (337)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCSSCSEEEEEEECTTCH--HHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEEC
T ss_pred             CeEEEEECCCHHHHHHHHHHHhCCCCCeEEEEEEcCCCH--HHHHHHhcccccCCCccceeEEecCCeEEECCeEEEEEe
Confidence            489999999999999998887643378999999986321  12222221   11110                  0111 


Q ss_pred             -CCHHHH-hhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCC
Q 017143           64 -PGHQEL-LDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLC  110 (376)
Q Consensus        64 -~~~~~~-l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a  110 (376)
                       .+.+++ ..+.++|+|+-|||...-.+.+.+.+++| -|-|.+--|..
T Consensus        79 ~~dp~~i~w~~~gvDiV~eatg~~~s~e~a~~~l~~G-ak~V~iSap~r  126 (337)
T 1rm4_O           79 DRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAG-AKKVLITAPGK  126 (337)
T ss_dssp             CSCGGGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTT-CSEEEESSCCB
T ss_pred             cCChhhCcccccCCCEEEECCCchhhHHHHHHHHHcC-CEEEEECCccc
Confidence             223332 22125899999999999999999999954 35677766654

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=97.40  E-value=0.00046  Score=61.84  Aligned_cols=115  Identities=17%  Similarity=0.221  Sum_probs=72.3

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ..+|+|||+|.+|+..+..++..   +.+|+ ++|+++++.   +.+ .++|.....+.++++++..  .|+|++++|..
T Consensus       155 g~~v~IiG~G~iG~~~a~~l~~~---G~~V~-~~dr~~~~~---~~~-~~~g~~~~~~~~l~~~l~~--aDvVi~~~p~~  224 (293)
T 3d4o_A          155 GANVAVLGLGRVGMSVARKFAAL---GAKVK-VGARESDLL---ARI-AEMGMEPFHISKAAQELRD--VDVCINTIPAL  224 (293)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT---TCEEE-EEESSHHHH---HHH-HHTTSEEEEGGGHHHHTTT--CSEEEECCSSC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhC---CCEEE-EEECCHHHH---HHH-HHCCCeecChhhHHHHhcC--CCEEEECCChH
Confidence            46899999999999988888776   67765 688888642   222 2456431113678888875  89999999986


Q ss_pred             ccHHHHHHHHcCCCCCeEEEe---cCCCCCHHHHHHHHHHHHhCCCeEEE--EeeccccCH
Q 017143           86 THYQILMDIINHPKPHHVLVE---KPLCTTVADCKKVVDAARKRPDILVQ--VGLEYRYMP  141 (376)
Q Consensus        86 ~h~~~~~~al~~~~g~~Vl~E---KP~a~~~~e~~~l~~~a~~~~~~~~~--v~~~~r~~p  141 (376)
                      .--+-..+.++  .| .+++.   .|...+.       +.+++. |+.+.  -+....+.|
T Consensus       225 ~i~~~~l~~mk--~~-~~lin~ar~~~~~~~-------~~a~~~-Gv~~~~~~~l~~~v~p  274 (293)
T 3d4o_A          225 VVTANVLAEMP--SH-TFVIDLASKPGGTDF-------RYAEKR-GIKALLVPGLPGIVAP  274 (293)
T ss_dssp             CBCHHHHHHSC--TT-CEEEECSSTTCSBCH-------HHHHHH-TCEEEECCCHHHHHCH
T ss_pred             HhCHHHHHhcC--CC-CEEEEecCCCCCCCH-------HHHHHC-CCEEEECCCCCcccCH
Confidence            54344556677  54 34443   3333332       233233 55553  455555544

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=97.39  E-value=0.00035  Score=62.84  Aligned_cols=88  Identities=13%  Similarity=0.226  Sum_probs=60.1

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ..+|+|||+|.+|+..+..+...   +.+|+ ++|+++++   .+.+. ++|.....+.+++++++.  .|+|++++|..
T Consensus       157 g~~v~IiG~G~iG~~~a~~l~~~---G~~V~-~~d~~~~~---~~~~~-~~g~~~~~~~~l~~~l~~--aDvVi~~~p~~  226 (300)
T 2rir_A          157 GSQVAVLGLGRTGMTIARTFAAL---GANVK-VGARSSAH---LARIT-EMGLVPFHTDELKEHVKD--IDICINTIPSM  226 (300)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHT---TCEEE-EEESSHHH---HHHHH-HTTCEEEEGGGHHHHSTT--CSEEEECCSSC
T ss_pred             CCEEEEEcccHHHHHHHHHHHHC---CCEEE-EEECCHHH---HHHHH-HCCCeEEchhhHHHHhhC--CCEEEECCChh
Confidence            46899999999999998888876   67765 68898863   33332 356431124678888875  89999999985


Q ss_pred             ccHHHHHHHHcCCCCCeEEEe
Q 017143           86 THYQILMDIINHPKPHHVLVE  106 (376)
Q Consensus        86 ~h~~~~~~al~~~~g~~Vl~E  106 (376)
                      .--+-....++  .| .+++.
T Consensus       227 ~i~~~~~~~mk--~g-~~lin  244 (300)
T 2rir_A          227 ILNQTVLSSMT--PK-TLILD  244 (300)
T ss_dssp             CBCHHHHTTSC--TT-CEEEE
T ss_pred             hhCHHHHHhCC--CC-CEEEE
Confidence            43333445566  44 45554

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=97.34  E-value=0.001  Score=58.39  Aligned_cols=115  Identities=12%  Similarity=0.113  Sum_probs=73.6

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      -++.|||+|.+|+..+..|...   +.+| .|++|+++   ++++++ ++++....   ++++ .  +.|+|+.+||...
T Consensus       119 k~vlvlGaGGaaraia~~L~~~---G~~v-~V~nRt~~---ka~~la-~~~~~~~~---~~~l-~--~~DiVInaTp~Gm  184 (269)
T 3phh_A          119 QNALILGAGGSAKALACELKKQ---GLQV-SVLNRSSR---GLDFFQ-RLGCDCFM---EPPK-S--AFDLIINATSASL  184 (269)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCEE-EEECSSCT---THHHHH-HHTCEEES---SCCS-S--CCSEEEECCTTCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHC---CCEE-EEEeCCHH---HHHHHH-HCCCeEec---HHHh-c--cCCEEEEcccCCC
Confidence            4899999999999999888886   4554 58899998   577777 77754222   3333 2  5899999999765


Q ss_pred             cH------HHHHHHHcCCCCCeEEEe---cCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHH
Q 017143           87 HY------QILMDIINHPKPHHVLVE---KPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKL  146 (376)
Q Consensus        87 h~------~~~~~al~~~~g~~Vl~E---KP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~  146 (376)
                      +.      +.+...++  .+ .++++   +|  .|.     +.+.|+++ |..+.-|....-..+....
T Consensus       185 ~~~~~l~~~~l~~~l~--~~-~~v~D~vY~P--~T~-----ll~~A~~~-G~~~~~Gl~MLv~Qa~~~f  242 (269)
T 3phh_A          185 HNELPLNKEVLKGYFK--EG-KLAYDLAYGF--LTP-----FLSLAKEL-KTPFQDGKDMLIYQAALSF  242 (269)
T ss_dssp             CCSCSSCHHHHHHHHH--HC-SEEEESCCSS--CCH-----HHHHHHHT-TCCEECSHHHHHHHHHHHH
T ss_pred             CCCCCCChHHHHhhCC--CC-CEEEEeCCCC--chH-----HHHHHHHC-cCEEECCHHHHHHHHHHHH
Confidence            42      22222555  33 45555   44  222     66666454 7777777655544433333

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=97.34  E-value=0.00044  Score=62.50  Aligned_cols=81  Identities=15%  Similarity=0.103  Sum_probs=51.8

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhc--CCC-cEEEEEeCCChhhHHHHHHHHHhcCCCC------------CccCCHHHHh
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLR--SQG-VSVVCIADPHLQSRQQALKLANAFDWPL------------KVFPGHQELL   70 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~--~~~-~~~~~v~d~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l   70 (376)
                      ++||+|||+|.+|......|.+..  ..+ .+|+ ++++ ++   +.+++.++.|+.+            ..+++.+ .+
T Consensus         8 ~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~-~~~r-~~---~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~   81 (317)
T 2qyt_A            8 PIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVS-WIAR-GA---HLEAIRAAGGLRVVTPSRDFLARPTCVTDNPA-EV   81 (317)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEE-EECC-HH---HHHHHHHHTSEEEECSSCEEEECCSEEESCHH-HH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCccccCCCCCEE-EEEc-HH---HHHHHHhcCCeEEEeCCCCeEEecceEecCcc-cc
Confidence            479999999999998877776530  005 6766 6777 55   4555544234321            1123443 34


Q ss_pred             hCCCCCEEEEeCCCCccHHHHHHH
Q 017143           71 DSGLCDVVVVSTPNMTHYQILMDI   94 (376)
Q Consensus        71 ~~~~~D~V~i~t~~~~h~~~~~~a   94 (376)
                      .  +.|+|++++|+....+.+...
T Consensus        82 ~--~~D~vil~vk~~~~~~v~~~i  103 (317)
T 2qyt_A           82 G--TVDYILFCTKDYDMERGVAEI  103 (317)
T ss_dssp             C--CEEEEEECCSSSCHHHHHHHH
T ss_pred             C--CCCEEEEecCcccHHHHHHHH
Confidence            3  489999999998876665443

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=97.33  E-value=0.00077  Score=61.45  Aligned_cols=67  Identities=25%  Similarity=0.411  Sum_probs=51.7

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      ...+|||||+|.||+.....++..   +.+++ ++|++++.     +.+.++|+.   +.++++++++  .|+|++++|.
T Consensus       145 ~g~~vgIIG~G~iG~~vA~~l~~~---G~~V~-~~d~~~~~-----~~~~~~g~~---~~~l~e~l~~--aDiVil~vp~  210 (333)
T 2d0i_A          145 YGKKVGILGMGAIGKAIARRLIPF---GVKLY-YWSRHRKV-----NVEKELKAR---YMDIDELLEK--SDIVILALPL  210 (333)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGG---TCEEE-EECSSCCH-----HHHHHHTEE---ECCHHHHHHH--CSEEEECCCC
T ss_pred             CcCEEEEEccCHHHHHHHHHHHHC---CCEEE-EECCCcch-----hhhhhcCce---ecCHHHHHhh--CCEEEEcCCC
Confidence            346899999999999998888776   67865 68888763     223345643   3489999986  8999999998


Q ss_pred             C
Q 017143           85 M   85 (376)
Q Consensus        85 ~   85 (376)
                      .
T Consensus       211 ~  211 (333)
T 2d0i_A          211 T  211 (333)
T ss_dssp             C
T ss_pred             C
Confidence            6

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.31  E-value=0.00056  Score=53.91  Aligned_cols=105  Identities=10%  Similarity=0.085  Sum_probs=64.6

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCC--HHHHhhC---CCCCEE
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPG--HQELLDS---GLCDVV   78 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~---~~~D~V   78 (376)
                      ..+-+|.|+|+|.+|...+..|...   +.+++ ++|+++++   .+++. +.|+. ..+.|  -++.|..   .+.|+|
T Consensus         5 ~~~~~viIiG~G~~G~~la~~L~~~---g~~v~-vid~~~~~---~~~~~-~~g~~-~i~gd~~~~~~l~~a~i~~ad~v   75 (140)
T 3fwz_A            5 DICNHALLVGYGRVGSLLGEKLLAS---DIPLV-VIETSRTR---VDELR-ERGVR-AVLGNAANEEIMQLAHLECAKWL   75 (140)
T ss_dssp             CCCSCEEEECCSHHHHHHHHHHHHT---TCCEE-EEESCHHH---HHHHH-HTTCE-EEESCTTSHHHHHHTTGGGCSEE
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHC---CCCEE-EEECCHHH---HHHHH-HcCCC-EEECCCCCHHHHHhcCcccCCEE
Confidence            3457899999999999998888875   77876 56888884   44433 35654 22222  2233332   358999


Q ss_pred             EEeCCCCccHHHHHH-HHcCCCCCeEEEecCCCCCHHHHHHHH
Q 017143           79 VVSTPNMTHYQILMD-IINHPKPHHVLVEKPLCTTVADCKKVV  120 (376)
Q Consensus        79 ~i~t~~~~h~~~~~~-al~~~~g~~Vl~EKP~a~~~~e~~~l~  120 (376)
                      ++++|++..-..+.. +-+...+..|++   .+.+.+....|.
T Consensus        76 i~~~~~~~~n~~~~~~a~~~~~~~~iia---r~~~~~~~~~l~  115 (140)
T 3fwz_A           76 ILTIPNGYEAGEIVASARAKNPDIEIIA---RAHYDDEVAYIT  115 (140)
T ss_dssp             EECCSCHHHHHHHHHHHHHHCSSSEEEE---EESSHHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHHHCCCCeEEE---EECCHHHHHHHH
Confidence            999998754443332 322113556765   345666655544

>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*

Probab=97.31  E-value=0.0012  Score=59.68  Aligned_cols=123  Identities=15%  Similarity=0.155  Sum_probs=80.1

Q ss_pred             CceeEEEEeC-ChhhHHHHHH--hhhhcCCCcEEEEEeCCChhhHHHHHHH---HHhcCCCCCccCCHHHHhhC-CCCCE
Q 017143            5 DTVKYGIIGM-GMMGREHFIN--LHHLRSQGVSVVCIADPHLQSRQQALKL---ANAFDWPLKVFPGHQELLDS-GLCDV   77 (376)
Q Consensus         5 ~~~~v~iiG~-G~~g~~~~~~--~~~~~~~~~~~~~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~-~~~D~   77 (376)
                      +..||.|-|+ |.+++..+..  +.+.  ++.++++.+++....  ..+++   ..+.|+|  +|+|++++.+. +++|+
T Consensus         9 ~~tkviV~G~~Gk~~~~ml~~~~~~~r--~~~~vVagV~P~~~g--~~~~v~~G~~~~Gvp--vy~sv~ea~~~~p~~Dl   82 (334)
T 3mwd_B            9 RHTKAIVWGMQTRAVQGMLDFDYVCSR--DEPSVAAMVYPFTGD--HKQKFYWGHKEILIP--VFKNMADAMRKHPEVDV   82 (334)
T ss_dssp             TTCCEEEESCCHHHHHHHHHHHHHTTC--SSCSEEEEECTTSCS--EEEEEEETTEEEEEE--EESSHHHHHHHCTTCCE
T ss_pred             CCCeEEEECCchHHHHHHHHhcccccC--CCceEEEEEcCCCCC--ccceEeccCccCCce--eeCCHHHHhhcCCCCcE
Confidence            4689999997 5444443332  2222  679999999986530  00111   0123555  99999999875 36899


Q ss_pred             EEEeCCCCccHHHHHHHHcCCCCC-eEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeecc
Q 017143           78 VVVSTPNMTHYQILMDIINHPKPH-HVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEY  137 (376)
Q Consensus        78 V~i~t~~~~h~~~~~~al~~~~g~-~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~  137 (376)
                      ++|++|+..-.+.+++++.+ +|. .|.|=-. ....++.++|.+++++. |+ -.+|.|.
T Consensus        83 aVi~vp~~~a~~ai~ea~~~-~Gv~~vViiT~-G~~e~~~~~l~~~a~~~-g~-rliGPNc  139 (334)
T 3mwd_B           83 LINFASLRSAYDSTMETMNY-AQIRTIAIIAE-GIPEALTRKLIKKADQK-GV-TIIGPAT  139 (334)
T ss_dssp             EEECCCTTTHHHHHHHHTTS-TTCCEEEECCS-CCCHHHHHHHHHHHHHH-TC-EEECSSC
T ss_pred             EEEecCHHHHHHHHHHHHHH-CCCCEEEEECC-CCCHHHHHHHHHHHHHc-CC-EEEccCC
Confidence            99999999888888888863 344 5666222 34557888999999554 65 3455544

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=97.31  E-value=0.00042  Score=63.46  Aligned_cols=68  Identities=21%  Similarity=0.369  Sum_probs=52.9

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      -.+|||||+|.||+..+..++..   +.+|+ ++|+++.+.+.    +.+.|+.  .++++++++++  .|+|++++|..
T Consensus       164 gktvGIIG~G~IG~~vA~~l~~~---G~~V~-~~dr~~~~~~~----~~~~g~~--~~~~l~ell~~--aDvV~l~~Plt  231 (351)
T 3jtm_A          164 GKTIGTVGAGRIGKLLLQRLKPF---GCNLL-YHDRLQMAPEL----EKETGAK--FVEDLNEMLPK--CDVIVINMPLT  231 (351)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGG---CCEEE-EECSSCCCHHH----HHHHCCE--ECSCHHHHGGG--CSEEEECSCCC
T ss_pred             CCEEeEEEeCHHHHHHHHHHHHC---CCEEE-EeCCCccCHHH----HHhCCCe--EcCCHHHHHhc--CCEEEECCCCC
Confidence            36899999999999999888876   78866 57887653222    2344653  66799999987  89999999954

>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}

Probab=97.28  E-value=0.00037  Score=63.30  Aligned_cols=118  Identities=10%  Similarity=0.012  Sum_probs=81.7

Q ss_pred             CCceeEEEEeCChhhHHH---HHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEE
Q 017143            4 NDTVKYGIIGMGMMGREH---FINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~---~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      +..-|+.|.+.|.+|..+   ...+.+.  +..+++++.|.+..-++..+-+....|+|  .+.|++++++. ++|.++|
T Consensus         5 ~~~~~~vi~~~g~~~~~~aKta~gl~r~--~~~~iVgvid~~~~G~d~ge~~g~~~gip--i~~~l~~al~~-~~d~lvi   79 (349)
T 2obn_A            5 PLNQRVAILLHEGTTGTIGKTGLALLRY--SEAPIVAVIDRNCAGQSLREITGIYRYVP--IVKSVEAALEY-KPQVLVI   79 (349)
T ss_dssp             --CCCEEEECTTTSSSSSCHHHHHHHHH--CCSCEEEEECGGGTTSCHHHHHCCCSCCC--EESSHHHHGGG-CCSEEEE
T ss_pred             CCCCcEEEEeCCCCCcHHHHHhHHhhhc--CCCcEEEEEeCCCCCCcHHHhcCCcCCCC--ccCCHHHHHhC-CCCEEEE
Confidence            345689999999988633   3445666  56899999998754322221121223454  88999999975 5999999


Q ss_pred             eCCC------CccHHHHHHHHcCCCCCeEEE--ecCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 017143           81 STPN------MTHYQILMDIINHPKPHHVLV--EKPLCTTVADCKKVVDAARKRPDILVQVG  134 (376)
Q Consensus        81 ~t~~------~~h~~~~~~al~~~~g~~Vl~--EKP~a~~~~e~~~l~~~a~~~~~~~~~v~  134 (376)
                      .+.|      ..=.+.+.+|++  +|++|..  +-|++.+++    |.++| ++ |+.++..
T Consensus        80 g~a~~gG~l~~~~~~~i~~Al~--~G~~Vvsglh~~l~~~pe----l~~~A-~~-g~~i~dv  133 (349)
T 2obn_A           80 GIAPKGGGIPDDYWIELKTALQ--AGMSLVNGLHTPLANIPD----LNALL-QP-GQLIWDV  133 (349)
T ss_dssp             CCCCCCC-SCGGGHHHHHHHHH--TTCEEEECSSSCCTTCHH----HHHHC-CT-TCCEEET
T ss_pred             EecCCCCCCCHHHHHHHHHHHH--cCCcEEeCccchhhCCHH----HHHHH-Hc-CCEEEEe
Confidence            9843      234688999999  8899964  447776666    77778 66 7776654

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=97.28  E-value=0.00011  Score=64.28  Aligned_cols=69  Identities=14%  Similarity=0.188  Sum_probs=54.3

Q ss_pred             eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      +++|||+|.+|+..+..|...   +++-+.|++|+++   ++++++++++.  ..+++.++.+.+  .|+|+.+||...
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~---G~~~I~v~nR~~~---ka~~la~~~~~--~~~~~~~~~~~~--aDiVInatp~gm  178 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQM---GVKDIWVVNRTIE---RAKALDFPVKI--FSLDQLDEVVKK--AKSLFNTTSVGM  178 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT---TCCCEEEEESCHH---HHHTCCSSCEE--EEGGGHHHHHHT--CSEEEECSSTTT
T ss_pred             eEEEECcHHHHHHHHHHHHHc---CCCEEEEEeCCHH---HHHHHHHHccc--CCHHHHHhhhcC--CCEEEECCCCCC
Confidence            899999999999988888876   5644568899987   67777776653  246777777776  899999998654

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=97.27  E-value=0.00017  Score=65.91  Aligned_cols=139  Identities=10%  Similarity=0.063  Sum_probs=81.9

Q ss_pred             CceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHH-HhhCCCCCEEEEeC
Q 017143            5 DTVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQE-LLDSGLCDVVVVST   82 (376)
Q Consensus         5 ~~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~D~V~i~t   82 (376)
                      +++||+|+| +|.+|+..++.+....-+.++++++.+++...  +  .+. -.+.++ .+.+.+. .+  .++|+|+.|+
T Consensus         2 ~~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G--~--~~~-~~~~~i-~~~~~~~~~~--~~vDvVf~a~   73 (336)
T 2r00_A            2 QQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEG--K--TYR-FNGKTV-RVQNVEEFDW--SQVHIALFSA   73 (336)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTT--C--EEE-ETTEEE-EEEEGGGCCG--GGCSEEEECS
T ss_pred             CccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCC--C--cee-ecCcee-EEecCChHHh--cCCCEEEECC
Confidence            369999999 89999999888766422689999999754321  0  000 001111 1222221 22  2589999999


Q ss_pred             CCCccHHHHHHHHcCCCCCeEEEec---------CCC---CCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHH
Q 017143           83 PNMTHYQILMDIINHPKPHHVLVEK---------PLC---TTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIV  150 (376)
Q Consensus        83 ~~~~h~~~~~~al~~~~g~~Vl~EK---------P~a---~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i  150 (376)
                      |+..+.+.+..+++  +|..|+.=-         |..   .+.++.+   . . +  +..+.-+.++.-......++-+.
T Consensus        74 g~~~s~~~a~~~~~--~G~~vId~s~~~R~~~~~~~~vpevN~~~i~---~-~-~--~~~iIanp~C~tt~~~~~l~pL~  144 (336)
T 2r00_A           74 GGELSAKWAPIAAE--AGVVVIDNTSHFRYDYDIPLVVPEVNPEAIA---E-F-R--NRNIIANPNCSTIQMLVALKPIY  144 (336)
T ss_dssp             CHHHHHHHHHHHHH--TTCEEEECSSTTTTCTTSCBCCTTTCGGGGG---G-G-G--GTTEEECCCHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHH--cCCEEEEcCCccccCCCCCeEeccCCHHHhc---c-c-c--CCcEEECCChHHHHHHHHHHHHH
Confidence            99999999999999  777655421         222   2222221   1 1 1  12244444444455566677777


Q ss_pred             HcCCCCceEE
Q 017143          151 KSGSIGQVKM  160 (376)
Q Consensus       151 ~~g~iG~i~~  160 (376)
                      +.+.|-++..
T Consensus       145 ~~~~i~~~~v  154 (336)
T 2r00_A          145 DAVGIERINV  154 (336)
T ss_dssp             HHHCEEEEEE
T ss_pred             HhCCccEEEE
Confidence            7666654443

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=97.25  E-value=0.00049  Score=63.09  Aligned_cols=143  Identities=12%  Similarity=0.031  Sum_probs=86.1

Q ss_pred             CCceeEEEEe-CChhhHHHHHHhhhhcCC-----CcEEEEEeCCChhhHHHHHHHHHhc-C-CCCCcc-CCHHHHhhCCC
Q 017143            4 NDTVKYGIIG-MGMMGREHFINLHHLRSQ-----GVSVVCIADPHLQSRQQALKLANAF-D-WPLKVF-PGHQELLDSGL   74 (376)
Q Consensus         4 ~~~~~v~iiG-~G~~g~~~~~~~~~~~~~-----~~~~~~v~d~~~~~~~~~~~~~~~~-~-~~~~~~-~~~~~~l~~~~   74 (376)
                      |+++||+|+| +|.+|+..++.|.+.  +     .++++++.+++.... ........+ + .+.... .+.++ +.  +
T Consensus         7 M~m~kVaIvGATG~vG~~llr~L~~~--~~~~~~~~ei~~l~s~~~agk-~~~~~~~~l~~~~~~~~~~~~~~~-~~--~   80 (352)
T 2nqt_A            7 ANATKVAVAGASGYAGGEILRLLLGH--PAYADGRLRIGALTAATSAGS-TLGEHHPHLTPLAHRVVEPTEAAV-LG--G   80 (352)
T ss_dssp             CSCEEEEEETTTSHHHHHHHHHHHTC--HHHHTTSEEEEEEEESSCTTS-BGGGTCTTCGGGTTCBCEECCHHH-HT--T
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHcC--CCCCCccEEEEEEECCCcCCC-chhhhcccccccceeeeccCCHHH-hc--C
Confidence            3468999999 899999999998877  7     899999986543200 011100001 1 111111 12333 43  4


Q ss_pred             CCEEEEeCCCCccHHHHHHHHcCCCCCeEEE-ecCCCCCHHH-----------------HHHH---HHHHHhCCCeEEEE
Q 017143           75 CDVVVVSTPNMTHYQILMDIINHPKPHHVLV-EKPLCTTVAD-----------------CKKV---VDAARKRPDILVQV  133 (376)
Q Consensus        75 ~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~-EKP~a~~~~e-----------------~~~l---~~~a~~~~~~~~~v  133 (376)
                      +|+|+.|+|+....+++.++ +  +|+-|+. --|+-.+..+                 .-|+   .+.. +..  .+..
T Consensus        81 ~DvVf~alg~~~s~~~~~~~-~--~G~~vIDlSa~~R~~~~~~~~~~y~~~h~~~~vyglPEv~~n~~~i-~~~--~iIa  154 (352)
T 2nqt_A           81 HDAVFLALPHGHSAVLAQQL-S--PETLIIDCGADFRLTDAAVWERFYGSSHAGSWPYGLPELPGARDQL-RGT--RRIA  154 (352)
T ss_dssp             CSEEEECCTTSCCHHHHHHS-C--TTSEEEECSSTTTCSCHHHHHHHHSSCCCCCCCBSCTTSTTHHHHH-TTC--SEEE
T ss_pred             CCEEEECCCCcchHHHHHHH-h--CCCEEEEECCCccCCcchhhhhhccccCCCCeeEEecccccCHHHH-hcC--CEEE
Confidence            99999999999999999999 8  6765443 3333322211                 0011   1122 222  3555


Q ss_pred             eeccccCHHHHHHHHHHHcCCCC-ce
Q 017143          134 GLEYRYMPPVAKLIQIVKSGSIG-QV  158 (376)
Q Consensus       134 ~~~~r~~p~~~~~k~~i~~g~iG-~i  158 (376)
                      +-++--......++-+++.+.|- ++
T Consensus       155 nPgC~tt~~~lal~PL~~~~~i~~~i  180 (352)
T 2nqt_A          155 VPGCYPTAALLALFPALAADLIEPAV  180 (352)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCSCSEE
T ss_pred             cCCHHHHHHHHHHHHHHHcCCCcceE
Confidence            55555577788888888888876 54

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.21  E-value=0.00045  Score=55.50  Aligned_cols=84  Identities=18%  Similarity=0.082  Sum_probs=53.9

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC--CccCCHHHHhhC--CCCCEEEEe
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL--KVFPGHQELLDS--GLCDVVVVS   81 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~--~~~D~V~i~   81 (376)
                      ..+|+|+|+|.+|...+..+...   +.+++ ++|+++++   ++.+.++.|...  .-..+.+.+.+.  .+.|+|+++
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~---g~~V~-vid~~~~~---~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~   91 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSS---GHSVV-VVDKNEYA---FHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAF   91 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT---TCEEE-EEESCGGG---GGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEEC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhC---CCeEE-EEECCHHH---HHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEE
Confidence            57999999999999988888775   67766 56888874   333322345431  112233333221  248999999


Q ss_pred             CCCCccHHHHHHHHc
Q 017143           82 TPNMTHYQILMDIIN   96 (376)
Q Consensus        82 t~~~~h~~~~~~al~   96 (376)
                      +++..-...+..+++
T Consensus        92 ~~~~~~~~~~~~~~~  106 (155)
T 2g1u_A           92 TNDDSTNFFISMNAR  106 (155)
T ss_dssp             SSCHHHHHHHHHHHH
T ss_pred             eCCcHHHHHHHHHHH
Confidence            998765555555554

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=97.21  E-value=0.001  Score=62.67  Aligned_cols=103  Identities=22%  Similarity=0.357  Sum_probs=67.3

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc-CCHHHHhhC-------------
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF-PGHQELLDS-------------   72 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~-------------   72 (376)
                      -|+-|||+|.+|......|++.   +.+|+ ++|++++   +.+++.+. ..+  .| ..+++++++             
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~~---G~~V~-~~D~~~~---kv~~L~~g-~~p--i~epgl~~ll~~~~~~g~l~~ttd~   81 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAKH---GVDVL-GVDINQQ---TIDKLQNG-QIS--IEEPGLQEVYEEVLSSGKLKVSTTP   81 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT---TCEEE-EECSCHH---HHHHHHTT-CCS--SCCTTHHHHHHHHHHTTCEEEESSC
T ss_pred             CccEEEeeCHHHHHHHHHHHHC---CCEEE-EEECCHH---HHHHHHCC-CCC--cCCCCHHHHHHhhcccCceEEeCch
Confidence            4789999999999988888885   88977 5799998   55555542 232  23 345555321             


Q ss_pred             CCCCEEEEeCCCCcc-----------HHHHHH----HHcCCCCCeEEEecCCCCCHHHHHHHHHHH
Q 017143           73 GLCDVVVVSTPNMTH-----------YQILMD----IINHPKPHHVLVEKPLCTTVADCKKVVDAA  123 (376)
Q Consensus        73 ~~~D~V~i~t~~~~h-----------~~~~~~----al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a  123 (376)
                      .+.|+|+||.|+..+           ...+.+    .++  .| .+++.|- +..+.-++++.+..
T Consensus        82 ~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~--~g-~iVV~~S-TV~pgtt~~v~~~i  143 (431)
T 3ojo_A           82 EASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLK--KG-NTIIVES-TIAPKTMDDFVKPV  143 (431)
T ss_dssp             CCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCC--TT-EEEEECS-CCCTTHHHHTHHHH
T ss_pred             hhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCC--CC-CEEEEec-CCChhHHHHHHHHH
Confidence            248999999998763           222222    244  45 4666664 66666677776643

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=97.21  E-value=0.00028  Score=64.54  Aligned_cols=141  Identities=9%  Similarity=0.035  Sum_probs=80.8

Q ss_pred             ceeEEEEe-CChhhHHHHHHhh--hhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHH-HHhhCCCCCEEEEe
Q 017143            6 TVKYGIIG-MGMMGREHFINLH--HLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQ-ELLDSGLCDVVVVS   81 (376)
Q Consensus         6 ~~~v~iiG-~G~~g~~~~~~~~--~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~D~V~i~   81 (376)
                      ++||+|+| +|.+|+..++.|.  .+  +.++++++.+++...  +  .+. -.+.++.. .+.+ +.+.  ++|+|+.|
T Consensus         6 ~~kV~IiGAtG~iG~~llr~L~~~~~--~~~elv~i~s~~~~g--~--~~~-~~g~~i~~-~~~~~~~~~--~~DvV~~a   75 (340)
T 2hjs_A            6 PLNVAVVGATGSVGEALVGLLDERDF--PLHRLHLLASAESAG--Q--RMG-FAESSLRV-GDVDSFDFS--SVGLAFFA   75 (340)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTC--CCSCEEEEECTTTTT--C--EEE-ETTEEEEC-EEGGGCCGG--GCSEEEEC
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCC--CcEEEEEEecCCCCC--C--ccc-cCCcceEE-ecCCHHHhc--CCCEEEEc
Confidence            57999999 7999999999887  44  889999998764321  0  000 00111111 1211 1132  48999999


Q ss_pred             CCCCccHHHHHHHHcCCCCCeEEE-ecCCC-----CCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCC
Q 017143           82 TPNMTHYQILMDIINHPKPHHVLV-EKPLC-----TTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSI  155 (376)
Q Consensus        82 t~~~~h~~~~~~al~~~~g~~Vl~-EKP~a-----~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~i  155 (376)
                      +|...+.+.+..+++  +|..|+. --|+.     .-+.|...  +..+...+..+..+.++.-......++-+.+.+.|
T Consensus        76 ~g~~~s~~~a~~~~~--aG~kvId~Sa~~rd~~~~~~vpevN~--~~i~~~~~~~iIanp~C~tt~~~~~l~pL~~~~~i  151 (340)
T 2hjs_A           76 AAAEVSRAHAERARA--AGCSVIDLSGALEPSVAPPVMVSVNA--ERLASQAAPFLLSSPCAVAAELCEVLAPLLATLDC  151 (340)
T ss_dssp             SCHHHHHHHHHHHHH--TTCEEEETTCTTTTTTSCBCCHHHHG--GGGGGSCSSCEEECCCHHHHHHHHHHHHHTTTCCE
T ss_pred             CCcHHHHHHHHHHHH--CCCEEEEeCCCCCCCCCCeEEcCcCH--HHHhcCcCCCEEEcCCHHHHHHHHHHHHHHHhcCc
Confidence            999999999999999  6766543 22321     11112211  11111111135555554445556667777676666


Q ss_pred             CceEE
Q 017143          156 GQVKM  160 (376)
Q Consensus       156 G~i~~  160 (376)
                      -++..
T Consensus       152 ~~~~v  156 (340)
T 2hjs_A          152 RQLNL  156 (340)
T ss_dssp             EEEEE
T ss_pred             ceEEE
Confidence            44433

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=97.20  E-value=0.0013  Score=60.06  Aligned_cols=67  Identities=19%  Similarity=0.349  Sum_probs=52.2

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ..+|||||+|.||......++..   +.+|+ ++|+++++ +    .+.++|+.   +.++++++.+  .|+|++++|..
T Consensus       150 g~~vgIIG~G~iG~~iA~~l~~~---G~~V~-~~d~~~~~-~----~~~~~g~~---~~~l~~~l~~--aDvVil~vp~~  215 (334)
T 2dbq_A          150 GKTIGIIGLGRIGQAIAKRAKGF---NMRIL-YYSRTRKE-E----VERELNAE---FKPLEDLLRE--SDFVVLAVPLT  215 (334)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT---TCEEE-EECSSCCH-H----HHHHHCCE---ECCHHHHHHH--CSEEEECCCCC
T ss_pred             CCEEEEEccCHHHHHHHHHHHhC---CCEEE-EECCCcch-h----hHhhcCcc---cCCHHHHHhh--CCEEEECCCCC
Confidence            46899999999999988888775   77866 57888763 2    23345653   4689999987  89999999976


Q ss_pred             c
Q 017143           86 T   86 (376)
Q Consensus        86 ~   86 (376)
                      .
T Consensus       216 ~  216 (334)
T 2dbq_A          216 R  216 (334)
T ss_dssp             T
T ss_pred             h
Confidence            4

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=97.20  E-value=0.0015  Score=62.32  Aligned_cols=80  Identities=10%  Similarity=0.021  Sum_probs=52.2

Q ss_pred             CceeEEEEeCChh-hHHHHHHhhhhc-CCCcEEEEEeCCChhhHHHHHHHHHh----cCCC--CCccCCHHHHhhCCCCC
Q 017143            5 DTVKYGIIGMGMM-GREHFINLHHLR-SQGVSVVCIADPHLQSRQQALKLANA----FDWP--LKVFPGHQELLDSGLCD   76 (376)
Q Consensus         5 ~~~~v~iiG~G~~-g~~~~~~~~~~~-~~~~~~~~v~d~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~l~~~~~D   76 (376)
                      +++||+|||+|.+ +...+..+.... +-...-+.++|+++++++....+...    .+.+  +..++|+++.+++  .|
T Consensus        27 ~~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~--AD  104 (472)
T 1u8x_X           27 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTD--VD  104 (472)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSS--CS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcC--CC
Confidence            4589999999997 433443444431 11134466899999876554444433    2444  3456799888876  89


Q ss_pred             EEEEeCCCCc
Q 017143           77 VVVVSTPNMT   86 (376)
Q Consensus        77 ~V~i~t~~~~   86 (376)
                      +|+++.|...
T Consensus       105 ~VViaag~~~  114 (472)
T 1u8x_X          105 FVMAHIRVGK  114 (472)
T ss_dssp             EEEECCCTTH
T ss_pred             EEEEcCCCcc
Confidence            9999999743

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=97.19  E-value=0.0003  Score=62.10  Aligned_cols=121  Identities=14%  Similarity=0.141  Sum_probs=76.6

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      -++.|||+|.+|+..+..|...   ++.-+.|++|+.+   ++++++++++.+  ..++.+  +  .+.|+|+.+||...
T Consensus       120 ~~vlvlGaGgaarav~~~L~~~---G~~~i~v~nRt~~---ka~~la~~~~~~--~~~~~~--~--~~~DivInaTp~gm  187 (271)
T 1npy_A          120 AKVIVHGSGGMAKAVVAAFKNS---GFEKLKIYARNVK---TGQYLAALYGYA--YINSLE--N--QQADILVNVTSIGM  187 (271)
T ss_dssp             SCEEEECSSTTHHHHHHHHHHT---TCCCEEEECSCHH---HHHHHHHHHTCE--EESCCT--T--CCCSEEEECSSTTC
T ss_pred             CEEEEECCcHHHHHHHHHHHHC---CCCEEEEEeCCHH---HHHHHHHHcCCc--cchhhh--c--ccCCEEEECCCCCc
Confidence            5899999999999998888876   6644558999987   677888887743  222222  2  35899999999876


Q ss_pred             cHH-------HHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHH
Q 017143           87 HYQ-------ILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKL  146 (376)
Q Consensus        87 h~~-------~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~  146 (376)
                      +..       +....+.  .+. ++++=  ..++.+. .|.+.|+++ |..+.-|....-..+....
T Consensus       188 ~~~~~~~~~~~~~~~l~--~~~-~v~Dl--vY~P~~T-~ll~~A~~~-G~~~i~Gl~MLv~Qa~~~f  247 (271)
T 1npy_A          188 KGGKEEMDLAFPKAFID--NAS-VAFDV--VAMPVET-PFIRYAQAR-GKQTISGAAVIVLQAVEQF  247 (271)
T ss_dssp             TTSTTTTSCSSCHHHHH--HCS-EEEEC--CCSSSSC-HHHHHHHHT-TCEEECHHHHHHHHHHHHH
T ss_pred             cCccccCCCCCCHHHcC--CCC-EEEEe--ecCCCCC-HHHHHHHHC-CCEEECCHHHHHHHHHHHH
Confidence            531       2235566  444 33332  2233333 566677454 7777666655443333333

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=97.16  E-value=0.0012  Score=59.73  Aligned_cols=82  Identities=17%  Similarity=0.271  Sum_probs=51.6

Q ss_pred             CCCCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHH-HHHHHHHhcC---CCCCccCCHHHHhhCCCCC
Q 017143            1 MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQ-QALKLANAFD---WPLKVFPGHQELLDSGLCD   76 (376)
Q Consensus         1 m~~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~l~~~~~D   76 (376)
                      |.++++.||+|||+|.+|...+..++..  .-+.-+.++|+++++.+ .+..+.....   .+++.+.+..+.+++  .|
T Consensus         1 m~~~~~~kI~IIGaG~vG~sla~~l~~~--~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~--aD   76 (316)
T 1ldn_A            1 MKNNGGARVVVIGAGFVGASYVFALMNQ--GIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRD--AD   76 (316)
T ss_dssp             CTTTTSCEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTT--CS
T ss_pred             CCCCCCCEEEEECcCHHHHHHHHHHHhC--CCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCC--CC
Confidence            7666778999999999999877777665  32333557899987443 2233433211   112222333344554  89


Q ss_pred             EEEEeCCCCc
Q 017143           77 VVVVSTPNMT   86 (376)
Q Consensus        77 ~V~i~t~~~~   86 (376)
                      +|+++.+...
T Consensus        77 vViia~~~~~   86 (316)
T 1ldn_A           77 LVVICAGANQ   86 (316)
T ss_dssp             EEEECCSCCC
T ss_pred             EEEEcCCCCC
Confidence            9999988643

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=97.15  E-value=0.00072  Score=62.79  Aligned_cols=68  Identities=18%  Similarity=0.353  Sum_probs=52.5

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      -.+|||||+|.||+..+..++..   +.+|+ ++|+++.+.+    .+.++|+.  .+.+++++++.  .|+|++++|..
T Consensus       191 gktvGIIGlG~IG~~vA~~l~a~---G~~V~-~~d~~~~~~~----~~~~~G~~--~~~~l~ell~~--aDvV~l~~Plt  258 (393)
T 2nac_A          191 AMHVGTVAAGRIGLAVLRRLAPF---DVHLH-YTDRHRLPES----VEKELNLT--WHATREDMYPV--CDVVTLNCPLH  258 (393)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGG---TCEEE-EECSSCCCHH----HHHHHTCE--ECSSHHHHGGG--CSEEEECSCCC
T ss_pred             CCEEEEEeECHHHHHHHHHHHhC---CCEEE-EEcCCccchh----hHhhcCce--ecCCHHHHHhc--CCEEEEecCCc
Confidence            46899999999999998888876   78876 5788765322    23445653  55789999987  89999999954

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=97.15  E-value=0.00085  Score=60.81  Aligned_cols=68  Identities=15%  Similarity=0.249  Sum_probs=52.0

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCC-ChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADP-HLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      ..+|||||+|.||+..+..++..   +.+|+ ++|+ ++++.     .+.++|+.  ..++++++++.  .|+|++++|.
T Consensus       146 g~~vgIIG~G~IG~~~A~~l~~~---G~~V~-~~d~~~~~~~-----~~~~~g~~--~~~~l~ell~~--aDvVil~~p~  212 (320)
T 1gdh_A          146 NKTLGIYGFGSIGQALAKRAQGF---DMDID-YFDTHRASSS-----DEASYQAT--FHDSLDSLLSV--SQFFSLNAPS  212 (320)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTT---TCEEE-EECSSCCCHH-----HHHHHTCE--ECSSHHHHHHH--CSEEEECCCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHC---CCEEE-EECCCCcChh-----hhhhcCcE--EcCCHHHHHhh--CCEEEEeccC
Confidence            46899999999999998888875   68876 5788 77631     23345653  45589999986  8999999996


Q ss_pred             Cc
Q 017143           85 MT   86 (376)
Q Consensus        85 ~~   86 (376)
                      ..
T Consensus       213 ~~  214 (320)
T 1gdh_A          213 TP  214 (320)
T ss_dssp             CT
T ss_pred             ch
Confidence            53

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=97.14  E-value=0.0013  Score=59.36  Aligned_cols=67  Identities=22%  Similarity=0.258  Sum_probs=52.1

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ..+|||||+|.+|+.....++..   +.+|+ ++|+++++   .  .+.++|+.   +.++++++..  .|+|++++|..
T Consensus       142 g~~vgIIG~G~IG~~~A~~l~~~---G~~V~-~~d~~~~~---~--~~~~~g~~---~~~l~ell~~--aDvVvl~~P~~  207 (313)
T 2ekl_A          142 GKTIGIVGFGRIGTKVGIIANAM---GMKVL-AYDILDIR---E--KAEKINAK---AVSLEELLKN--SDVISLHVTVS  207 (313)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHT---TCEEE-EECSSCCH---H--HHHHTTCE---ECCHHHHHHH--CSEEEECCCCC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHC---CCEEE-EECCCcch---h--HHHhcCce---ecCHHHHHhh--CCEEEEeccCC
Confidence            46899999999999998888876   78876 57888763   2  13456753   3589999986  89999999964


Q ss_pred             c
Q 017143           86 T   86 (376)
Q Consensus        86 ~   86 (376)
                      .
T Consensus       208 ~  208 (313)
T 2ekl_A          208 K  208 (313)
T ss_dssp             T
T ss_pred             h
Confidence            3

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=97.13  E-value=0.001  Score=61.00  Aligned_cols=69  Identities=25%  Similarity=0.293  Sum_probs=52.5

Q ss_pred             ceeEEEEeCChhhHHHHHHhh-hhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLH-HLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~-~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      -.+|||||+|.||+..+..++ ..   +.+|+ ++|+++++.+.+    .++|+.  ..+++++++++  .|+|++++|.
T Consensus       163 g~~vgIIG~G~IG~~vA~~l~~~~---G~~V~-~~d~~~~~~~~~----~~~g~~--~~~~l~ell~~--aDvVil~vp~  230 (348)
T 2w2k_A          163 GHVLGAVGLGAIQKEIARKAVHGL---GMKLV-YYDVAPADAETE----KALGAE--RVDSLEELARR--SDCVSVSVPY  230 (348)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT---CCEEE-EECSSCCCHHHH----HHHTCE--ECSSHHHHHHH--CSEEEECCCC
T ss_pred             CCEEEEEEECHHHHHHHHHHHHhc---CCEEE-EECCCCcchhhH----hhcCcE--EeCCHHHHhcc--CCEEEEeCCC
Confidence            368999999999999988887 65   77866 589887643322    234653  44689999987  8999999997


Q ss_pred             Cc
Q 017143           85 MT   86 (376)
Q Consensus        85 ~~   86 (376)
                      ..
T Consensus       231 ~~  232 (348)
T 2w2k_A          231 MK  232 (348)
T ss_dssp             SG
T ss_pred             Ch
Confidence            53

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=97.12  E-value=0.00081  Score=59.98  Aligned_cols=100  Identities=18%  Similarity=0.233  Sum_probs=63.0

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHH-HHh--cCCCCCccCCHHHHhhCCCCCEEEEeC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKL-ANA--FDWPLKVFPGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~l~~~~~D~V~i~t   82 (376)
                      ..||+|||+|.||......++ .   +++|+ ++|++++.++++.+. ..+  -++  ...+|+++ +++  .|+|+.+.
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-a---G~~V~-v~d~~~~~~~~~~~~l~~~~~~~i--~~~~~~~~-~~~--aDlVieav   81 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-S---KHEVV-LQDVSEKALEAAREQIPEELLSKI--EFTTTLEK-VKD--CDIVMEAV   81 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-T---TSEEE-EECSCHHHHHHHHHHSCGGGGGGE--EEESSCTT-GGG--CSEEEECC
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-c---CCEEE-EEECCHHHHHHHHHHHHHHHhCCe--EEeCCHHH-HcC--CCEEEEcC
Confidence            369999999999999888887 6   77865 789999865544432 000  032  35677776 555  89999999


Q ss_pred             CCCccHHHHH-HHHcCCCCCeEEEecCCCCCHHHH
Q 017143           83 PNMTHYQILM-DIINHPKPHHVLVEKPLCTTVADC  116 (376)
Q Consensus        83 ~~~~h~~~~~-~al~~~~g~~Vl~EKP~a~~~~e~  116 (376)
                      |......... ..++. ..-.|++----+.++.+.
T Consensus        82 pe~~~vk~~l~~~l~~-~~~~IlasntSti~~~~~  115 (293)
T 1zej_A           82 FEDLNTKVEVLREVER-LTNAPLCSNTSVISVDDI  115 (293)
T ss_dssp             CSCHHHHHHHHHHHHT-TCCSCEEECCSSSCHHHH
T ss_pred             cCCHHHHHHHHHHHhc-CCCCEEEEECCCcCHHHH
Confidence            9988643332 22331 211244433334555543

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=97.10  E-value=0.0021  Score=58.55  Aligned_cols=72  Identities=22%  Similarity=0.207  Sum_probs=51.1

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHH-HHHHHH---hcCCC--CCccCCHHHHhhCCCCCEEE
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQ-ALKLAN---AFDWP--LKVFPGHQELLDSGLCDVVV   79 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~---~~~~~--~~~~~~~~~~l~~~~~D~V~   79 (376)
                      ++||+|||+|.+|......++..  ..++ +.++|+++++++. +..+..   ..+.+  +..++|+++.+++  .|+|+
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~--g~~~-V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~--aDiVi   83 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALR--ELAD-VVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTG--ADCVI   83 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH--TCCE-EEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTT--CSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCCe-EEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCC--CCEEE
Confidence            47999999999999877777775  3337 7789999886544 222222   22333  3346899888876  89999


Q ss_pred             EeC
Q 017143           80 VST   82 (376)
Q Consensus        80 i~t   82 (376)
                      ++.
T Consensus        84 ~a~   86 (331)
T 1pzg_A           84 VTA   86 (331)
T ss_dssp             ECC
T ss_pred             Ecc
Confidence            998

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=97.10  E-value=0.0011  Score=59.69  Aligned_cols=67  Identities=25%  Similarity=0.389  Sum_probs=52.2

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ..+|||||+|.+|+.....++..   +.+|+ ++|+++++     +.+.++|+.  . .++++++..  .|+|++++|..
T Consensus       142 g~~vgIiG~G~IG~~~A~~l~~~---G~~V~-~~d~~~~~-----~~~~~~g~~--~-~~l~ell~~--aDvV~l~~p~~  207 (307)
T 1wwk_A          142 GKTIGIIGFGRIGYQVAKIANAL---GMNIL-LYDPYPNE-----ERAKEVNGK--F-VDLETLLKE--SDVVTIHVPLV  207 (307)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT---TCEEE-EECSSCCH-----HHHHHTTCE--E-CCHHHHHHH--CSEEEECCCCS
T ss_pred             CceEEEEccCHHHHHHHHHHHHC---CCEEE-EECCCCCh-----hhHhhcCcc--c-cCHHHHHhh--CCEEEEecCCC
Confidence            46899999999999998888876   78876 67888763     123456753  3 489999986  89999999965


Q ss_pred             c
Q 017143           86 T   86 (376)
Q Consensus        86 ~   86 (376)
                      .
T Consensus       208 ~  208 (307)
T 1wwk_A          208 E  208 (307)
T ss_dssp             T
T ss_pred             h
Confidence            4

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=97.10  E-value=0.00012  Score=69.06  Aligned_cols=89  Identities=11%  Similarity=0.179  Sum_probs=63.0

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCc---EEEEEeCCChhhHHHHHHHHHhcCCC---CCcc-CCH----HHHhhCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGV---SVVCIADPHLQSRQQALKLANAFDWP---LKVF-PGH----QELLDSGL   74 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~---~~~~v~d~~~~~~~~~~~~~~~~~~~---~~~~-~~~----~~~l~~~~   74 (376)
                      +.||.|||+|.+|+..++.+.+.  +++   +++ +.|++...+    ++.+..|++   ..+. +++    +++|..  
T Consensus        13 ~~rVlIIGaGgVG~~va~lla~~--~dv~~~~I~-vaD~~~~~~----~~~~~~g~~~~~~~Vdadnv~~~l~aLl~~--   83 (480)
T 2ph5_A           13 KNRFVILGFGCVGQALMPLIFEK--FDIKPSQVT-IIAAEGTKV----DVAQQYGVSFKLQQITPQNYLEVIGSTLEE--   83 (480)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHH--BCCCGGGEE-EEESSCCSC----CHHHHHTCEEEECCCCTTTHHHHTGGGCCT--
T ss_pred             CCCEEEECcCHHHHHHHHHHHhC--CCCceeEEE-Eeccchhhh----hHHhhcCCceeEEeccchhHHHHHHHHhcC--
Confidence            47999999999999999999888  555   444 456665432    222333433   1222 334    345544  


Q ss_pred             CCEEEEeCCCCccHHHHHHHHcCCCCCeEEE
Q 017143           75 CDVVVVSTPNMTHYQILMDIINHPKPHHVLV  105 (376)
Q Consensus        75 ~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~  105 (376)
                      .|+|+-++++..-.+++..|++  +|.|++-
T Consensus        84 ~DvVIN~s~~~~~l~Im~acle--aGv~YlD  112 (480)
T 2ph5_A           84 NDFLIDVSIGISSLALIILCNQ--KGALYIN  112 (480)
T ss_dssp             TCEEEECCSSSCHHHHHHHHHH--HTCEEEE
T ss_pred             CCEEEECCccccCHHHHHHHHH--cCCCEEE
Confidence            4999999999999999999999  8899875

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.10  E-value=0.0029  Score=53.80  Aligned_cols=102  Identities=18%  Similarity=0.127  Sum_probs=64.1

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc---CCHHHHhh--CCCCCEEEEe
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF---PGHQELLD--SGLCDVVVVS   81 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~--~~~~D~V~i~   81 (376)
                      |||.|+|+|.+|...+..|.+.   +.+++ ++|++++   +++++++++++. ..+   .+.+.+-+  -.+.|+|+++
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~---g~~v~-vid~~~~---~~~~l~~~~~~~-~i~gd~~~~~~l~~a~i~~ad~vi~~   72 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSR---KYGVV-IINKDRE---LCEEFAKKLKAT-IIHGDGSHKEILRDAEVSKNDVVVIL   72 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHT---TCCEE-EEESCHH---HHHHHHHHSSSE-EEESCTTSHHHHHHHTCCTTCEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC---CCeEE-EEECCHH---HHHHHHHHcCCe-EEEcCCCCHHHHHhcCcccCCEEEEe
Confidence            4899999999999998888775   67777 5688887   566666666654 122   23332222  2458999999


Q ss_pred             CCCCccHHHHHHHHcC-CCCCeEEEecCCCCCHHHHHHH
Q 017143           82 TPNMTHYQILMDIINH-PKPHHVLVEKPLCTTVADCKKV  119 (376)
Q Consensus        82 t~~~~h~~~~~~al~~-~~g~~Vl~EKP~a~~~~e~~~l  119 (376)
                      ++++.--..+...++. ...++|++   .+.+.+..+.|
T Consensus        73 ~~~d~~n~~~~~~a~~~~~~~~iia---~~~~~~~~~~l  108 (218)
T 3l4b_C           73 TPRDEVNLFIAQLVMKDFGVKRVVS---LVNDPGNMEIF  108 (218)
T ss_dssp             CSCHHHHHHHHHHHHHTSCCCEEEE---CCCSGGGHHHH
T ss_pred             cCCcHHHHHHHHHHHHHcCCCeEEE---EEeCcchHHHH
Confidence            9987554444444331 12456665   24445554444

>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus}

Probab=97.10  E-value=0.00057  Score=61.80  Aligned_cols=101  Identities=22%  Similarity=0.286  Sum_probs=65.8

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCC-ChhhHHHHHHHHHhcC---CC--------------CCccC--C
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADP-HLQSRQQALKLANAFD---WP--------------LKVFP--G   65 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~-~~~~~~~~~~~~~~~~---~~--------------~~~~~--~   65 (376)
                      ++||||.|.|.+|+..++.+...  +++++++|-|. +++......+.-+-+|   -.              +.++.  +
T Consensus         2 ~ikV~InGfGrIGr~v~r~l~~~--~~~evvaInd~~~~~~~a~ll~yDs~hG~~~~~v~~~~~~l~v~Gk~i~v~~~~d   79 (342)
T 2ep7_A            2 AIKVGINGFGRIGRSFFRASWGR--EEIEIVAINDLTDAKHLAHLLKYDSVHGIFKGSVEAKDDSIVVDGKEIKVFAQKD   79 (342)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTC--TTCEEEEEECSSCHHHHHHHHHEETTTEECSSCEEECSSEEEETTEEEEEECCSS
T ss_pred             ceEEEEECCCHHHHHHHHHHHhC--CCceEEEEecCCChHHHhhhhhcccccccCCCcEEEcCCEEEECCEEEEEEEcCC
Confidence            47999999999999999988776  89999999996 4432111111111121   00              11221  2


Q ss_pred             HHHHhh-CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCC
Q 017143           66 HQELLD-SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPL  109 (376)
Q Consensus        66 ~~~~l~-~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~  109 (376)
                      .+++-. +.++|+|+-||+.....+.+..++++|+ |-|++.-|.
T Consensus        80 p~~~~w~~~gvDiV~estG~~~s~e~a~~hl~aGa-kkVvisaps  123 (342)
T 2ep7_A           80 PSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGA-KKVIITAPA  123 (342)
T ss_dssp             GGGCCHHHHTCSEEEECSSSCCBHHHHTTTGGGTC-SEEEESSCC
T ss_pred             hhhCCccccCCCEEEECCCchhhhhhhHHHHhcCC-CEEEecCCC
Confidence            222211 1259999999999999999999999442 567887774

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=97.10  E-value=0.00062  Score=63.24  Aligned_cols=84  Identities=11%  Similarity=0.078  Sum_probs=52.4

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhc--CC--CcEEEEEeCCChh-----hHHHHHHHHH--hc--C--CC--CCccCCHHH
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLR--SQ--GVSVVCIADPHLQ-----SRQQALKLAN--AF--D--WP--LKVFPGHQE   68 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~--~~--~~~~~~v~d~~~~-----~~~~~~~~~~--~~--~--~~--~~~~~~~~~   68 (376)
                      ++||+|||+|.||......|.+..  .+  ..+|+ +++++++     ..+...+...  .+  +  ++  +..+++.++
T Consensus        21 ~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~-~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~e   99 (375)
T 1yj8_A           21 PLKISILGSGNWASAISKVVGTNAKNNYLFENEVR-MWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLAS   99 (375)
T ss_dssp             CBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEE-EECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEE-EEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHH
Confidence            468999999999998888777651  00  05554 6888876     4332222100  01  1  11  234577888


Q ss_pred             HhhCCCCCEEEEeCCCCccHHHHH
Q 017143           69 LLDSGLCDVVVVSTPNMTHYQILM   92 (376)
Q Consensus        69 ~l~~~~~D~V~i~t~~~~h~~~~~   92 (376)
                      ++.+  .|+|++++|+....+++.
T Consensus       100 a~~~--aDvVilav~~~~~~~vl~  121 (375)
T 1yj8_A          100 VIND--ADLLIFIVPCQYLESVLA  121 (375)
T ss_dssp             HHTT--CSEEEECCCHHHHHHHHH
T ss_pred             HHcC--CCEEEEcCCHHHHHHHHH
Confidence            8765  899999999854444443

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=97.10  E-value=0.00086  Score=61.46  Aligned_cols=67  Identities=21%  Similarity=0.216  Sum_probs=51.9

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      -.+|||||+|.||+.....++..   +.+|++ +|++...     +.+.+.|+.  ..+++++++++  .|+|++++|..
T Consensus       160 g~tvGIIGlG~IG~~vA~~l~~~---G~~V~~-~d~~~~~-----~~~~~~g~~--~~~~l~ell~~--aDiV~l~~Plt  226 (352)
T 3gg9_A          160 GQTLGIFGYGKIGQLVAGYGRAF---GMNVLV-WGRENSK-----ERARADGFA--VAESKDALFEQ--SDVLSVHLRLN  226 (352)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT---TCEEEE-ECSHHHH-----HHHHHTTCE--ECSSHHHHHHH--CSEEEECCCCS
T ss_pred             CCEEEEEeECHHHHHHHHHHHhC---CCEEEE-ECCCCCH-----HHHHhcCce--EeCCHHHHHhh--CCEEEEeccCc
Confidence            36899999999999998888876   788775 7876531     223445653  66799999987  89999999954

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=97.10  E-value=0.0007  Score=61.96  Aligned_cols=67  Identities=25%  Similarity=0.363  Sum_probs=52.0

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ..+|||||+|.||+..+..+...   +.+|+ ++|++.++     ..+.++|+.  .+.+++++++.  .|+|++++|..
T Consensus       168 g~tvGIIG~G~IG~~vA~~l~~~---G~~V~-~~d~~~~~-----~~~~~~g~~--~~~~l~ell~~--aDvV~l~~P~t  234 (347)
T 1mx3_A          168 GETLGIIGLGRVGQAVALRAKAF---GFNVL-FYDPYLSD-----GVERALGLQ--RVSTLQDLLFH--SDCVTLHCGLN  234 (347)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTT---TCEEE-EECTTSCT-----THHHHHTCE--ECSSHHHHHHH--CSEEEECCCCC
T ss_pred             CCEEEEEeECHHHHHHHHHHHHC---CCEEE-EECCCcch-----hhHhhcCCe--ecCCHHHHHhc--CCEEEEcCCCC
Confidence            46899999999999998888776   78876 57887653     122345653  56789999987  89999999975

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=97.10  E-value=0.00091  Score=61.05  Aligned_cols=65  Identities=22%  Similarity=0.365  Sum_probs=50.4

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      .+|||||+|.||+.....++..   +.+|++ +|+++.+.+    .. . +.  ...+++++++++  .|+|++++|..
T Consensus       174 ktvGIIGlG~IG~~vA~~l~~~---G~~V~~-~dr~~~~~~----~~-~-g~--~~~~~l~ell~~--sDvV~l~~Plt  238 (345)
T 4g2n_A          174 RRLGIFGMGRIGRAIATRARGF---GLAIHY-HNRTRLSHA----LE-E-GA--IYHDTLDSLLGA--SDIFLIAAPGR  238 (345)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTT---TCEEEE-ECSSCCCHH----HH-T-TC--EECSSHHHHHHT--CSEEEECSCCC
T ss_pred             CEEEEEEeChhHHHHHHHHHHC---CCEEEE-ECCCCcchh----hh-c-CC--eEeCCHHHHHhh--CCEEEEecCCC
Confidence            6899999999999998888876   788775 788764321    11 1 43  355799999987  89999999954

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=97.08  E-value=0.0018  Score=61.23  Aligned_cols=81  Identities=21%  Similarity=0.277  Sum_probs=55.2

Q ss_pred             CCCCCceeEEEEeCChh--hHHHHHHhhhhcC-CCcEEEEEeCCChhhHHHHHHHHHhcC-CC--CCccCCHHHHhhCCC
Q 017143            1 MAANDTVKYGIIGMGMM--GREHFINLHHLRS-QGVSVVCIADPHLQSRQQALKLANAFD-WP--LKVFPGHQELLDSGL   74 (376)
Q Consensus         1 m~~~~~~~v~iiG~G~~--g~~~~~~~~~~~~-~~~~~~~v~d~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~l~~~~   74 (376)
                      |++ +++||+|||+|.+  |...+..+..... .+ + +.++|++++++++....++.+. .+  +..++|+++++++  
T Consensus         1 m~m-~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-e-V~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~d--   75 (450)
T 3fef_A            1 MSL-DQIKIAYIGGGSQGWARSLMSDLSIDERMSG-T-VALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSA--   75 (450)
T ss_dssp             --C-CCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-E-EEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTT--
T ss_pred             CCC-CCCEEEEECCChhHhHHHHHHHHHhccccCC-e-EEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcC--
Confidence            554 4689999999995  4566666665311 23 5 5589999987666655554321 11  4567899999987  


Q ss_pred             CCEEEEeCCCCc
Q 017143           75 CDVVVVSTPNMT   86 (376)
Q Consensus        75 ~D~V~i~t~~~~   86 (376)
                      .|+|+++.+...
T Consensus        76 ADfVI~airvG~   87 (450)
T 3fef_A           76 ADIVIISILPGS   87 (450)
T ss_dssp             CSEEEECCCSSC
T ss_pred             CCEEEeccccCC
Confidence            899999998653

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=97.08  E-value=0.0019  Score=58.26  Aligned_cols=75  Identities=20%  Similarity=0.219  Sum_probs=48.4

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCC-cEEEEEeCCChhhHHHHH-HHHHh---cCCCCCc-cCCHHHHhhCCCCCEEEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQG-VSVVCIADPHLQSRQQAL-KLANA---FDWPLKV-FPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~-~~~~~v~d~~~~~~~~~~-~~~~~---~~~~~~~-~~~~~~~l~~~~~D~V~i   80 (376)
                      +||+|||+|.+|...+..+...  .- .+ +.++|+++++.+... ++...   .+.+++. .+++ +.+.+  .|+|++
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~--g~~~~-V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~--aDvVii   75 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQ--GVADD-YVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALAD--ADVVIS   75 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH--TCCSE-EEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTT--CSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCCCE-EEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCC--CCEEEE
Confidence            5899999999999888888765  21 35 458899987543221 22111   1111223 4677 55554  899999


Q ss_pred             eCCCCcc
Q 017143           81 STPNMTH   87 (376)
Q Consensus        81 ~t~~~~h   87 (376)
                      +++....
T Consensus        76 av~~~~~   82 (309)
T 1hyh_A           76 TLGNIKL   82 (309)
T ss_dssp             CCSCGGG
T ss_pred             ecCCccc
Confidence            9998664

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=97.08  E-value=0.0015  Score=59.02  Aligned_cols=81  Identities=21%  Similarity=0.215  Sum_probs=49.7

Q ss_pred             CCCCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHH-HHHHHHHh---cCCCCCccCCHHHHhhCCCCC
Q 017143            1 MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQ-QALKLANA---FDWPLKVFPGHQELLDSGLCD   76 (376)
Q Consensus         1 m~~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~l~~~~~D   76 (376)
                      |.+|+++||+|||+|.+|...+..+...  +-+.-+.++|+++++++ .+..+...   .+.+++.+.+-.+.+++  .|
T Consensus         1 m~~m~~~KI~IIGaG~vG~~la~~l~~~--~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~--aD   76 (317)
T 3d0o_A            1 MNKFKGNKVVLIGNGAVGSSYAFSLVNQ--SIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHD--AD   76 (317)
T ss_dssp             ---CCCCEEEEECCSHHHHHHHHHHHHH--CSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTT--CS
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHhC--CCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCC--CC
Confidence            6666789999999999999877777665  33445668899987553 23333321   11222233233444655  89


Q ss_pred             EEEEeCCCC
Q 017143           77 VVVVSTPNM   85 (376)
Q Consensus        77 ~V~i~t~~~   85 (376)
                      +|+++.+..
T Consensus        77 vVvi~ag~~   85 (317)
T 3d0o_A           77 LVVICAGAA   85 (317)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCCCC
Confidence            999998754

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=97.06  E-value=0.00099  Score=61.45  Aligned_cols=69  Identities=17%  Similarity=0.220  Sum_probs=52.7

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcE-EEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVS-VVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~-~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      -.+|||||+|.||+..+..+...   +.+ |+ ++|+++.+.+    .+.++|+.  .+.+++++++.  .|+|++++|.
T Consensus       164 g~tvgIIG~G~IG~~vA~~l~~~---G~~~V~-~~d~~~~~~~----~~~~~g~~--~~~~l~ell~~--aDvV~l~~P~  231 (364)
T 2j6i_A          164 GKTIATIGAGRIGYRVLERLVPF---NPKELL-YYDYQALPKD----AEEKVGAR--RVENIEELVAQ--ADIVTVNAPL  231 (364)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGG---CCSEEE-EECSSCCCHH----HHHHTTEE--ECSSHHHHHHT--CSEEEECCCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhC---CCcEEE-EECCCccchh----HHHhcCcE--ecCCHHHHHhc--CCEEEECCCC
Confidence            46899999999999998888876   675 66 5788775322    23455643  55789999987  8999999997


Q ss_pred             Cc
Q 017143           85 MT   86 (376)
Q Consensus        85 ~~   86 (376)
                      ..
T Consensus       232 t~  233 (364)
T 2j6i_A          232 HA  233 (364)
T ss_dssp             ST
T ss_pred             Ch
Confidence            53

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.06  E-value=0.0053  Score=50.53  Aligned_cols=103  Identities=12%  Similarity=0.116  Sum_probs=61.7

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc---CCHHHHhh---CCCCCEEE
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF---PGHQELLD---SGLCDVVV   79 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~---~~~~D~V~   79 (376)
                      ..+|+|+|+|.+|...+..|.+.  .+.+++ ++|+++++   ++++. +.|+. ..+   ++.+.+.+   -.+.|+|+
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~--~g~~V~-vid~~~~~---~~~~~-~~g~~-~~~gd~~~~~~l~~~~~~~~ad~vi  110 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRAR--YGKISL-GIEIREEA---AQQHR-SEGRN-VISGDATDPDFWERILDTGHVKLVL  110 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHH--HCSCEE-EEESCHHH---HHHHH-HTTCC-EEECCTTCHHHHHTBCSCCCCCEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhc--cCCeEE-EEECCHHH---HHHHH-HCCCC-EEEcCCCCHHHHHhccCCCCCCEEE
Confidence            45899999999999988887663  156766 56888874   44433 34654 222   23333322   13589999


Q ss_pred             EeCCCCccHHHHHHHHcC-CCCCeEEEecCCCCCHHHHHHH
Q 017143           80 VSTPNMTHYQILMDIINH-PKPHHVLVEKPLCTTVADCKKV  119 (376)
Q Consensus        80 i~t~~~~h~~~~~~al~~-~~g~~Vl~EKP~a~~~~e~~~l  119 (376)
                      +++|+......+...++. +....|++.   +.+.+..+.|
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~ii~~---~~~~~~~~~l  148 (183)
T 3c85_A          111 LAMPHHQGNQTALEQLQRRNYKGQIAAI---AEYPDQLEGL  148 (183)
T ss_dssp             ECCSSHHHHHHHHHHHHHTTCCSEEEEE---ESSHHHHHHH
T ss_pred             EeCCChHHHHHHHHHHHHHCCCCEEEEE---ECCHHHHHHH
Confidence            999986544444444432 123456652   4455555433

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=97.01  E-value=0.0021  Score=58.27  Aligned_cols=72  Identities=18%  Similarity=0.108  Sum_probs=48.5

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHH-HHHHH---hcCCC--CCccCCHHHHhhCCCCCEEE
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQA-LKLAN---AFDWP--LKVFPGHQELLDSGLCDVVV   79 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~---~~~~~--~~~~~~~~~~l~~~~~D~V~   79 (376)
                      ++||+|||+|.+|......++..  .-++ +.++|+++++++.. ..+..   ..+.+  +..++++ +.+++  .|+|+
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~--g~~~-v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~--aD~Vi   77 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQK--NLGD-VVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAG--ADVVI   77 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCCE-EEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTT--CSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCCe-EEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCC--CCEEE
Confidence            57999999999999877777665  3337 77899998865422 22221   12222  3345788 66665  89999


Q ss_pred             EeCC
Q 017143           80 VSTP   83 (376)
Q Consensus        80 i~t~   83 (376)
                      ++.+
T Consensus        78 ~a~g   81 (322)
T 1t2d_A           78 VTAG   81 (322)
T ss_dssp             ECCS
T ss_pred             EeCC
Confidence            9983

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=96.99  E-value=0.0021  Score=58.53  Aligned_cols=67  Identities=25%  Similarity=0.497  Sum_probs=52.0

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      -.+|||||+|.||+..+..++..   +.+|+ ++|+++.+     ..+.++|+.   +.+++++++.  .|+|++++|..
T Consensus       165 g~tvgIIGlG~IG~~vA~~l~~~---G~~V~-~~d~~~~~-----~~~~~~g~~---~~~l~ell~~--aDvV~l~~P~t  230 (335)
T 2g76_A          165 GKTLGILGLGRIGREVATRMQSF---GMKTI-GYDPIISP-----EVSASFGVQ---QLPLEEIWPL--CDFITVHTPLL  230 (335)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTT---TCEEE-EECSSSCH-----HHHHHTTCE---ECCHHHHGGG--CSEEEECCCCC
T ss_pred             cCEEEEEeECHHHHHHHHHHHHC---CCEEE-EECCCcch-----hhhhhcCce---eCCHHHHHhc--CCEEEEecCCC
Confidence            36899999999999998888776   78876 57887752     123456753   3589999987  89999999975


Q ss_pred             c
Q 017143           86 T   86 (376)
Q Consensus        86 ~   86 (376)
                      .
T Consensus       231 ~  231 (335)
T 2g76_A          231 P  231 (335)
T ss_dssp             T
T ss_pred             H
Confidence            3

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.98  E-value=0.0023  Score=55.75  Aligned_cols=93  Identities=16%  Similarity=0.170  Sum_probs=57.0

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh-------------------hhHHHHHHHHHhcC--CCCCc--
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL-------------------QSRQQALKLANAFD--WPLKV--   62 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~-------------------~~~~~~~~~~~~~~--~~~~~--   62 (376)
                      ..+|.|||+|.+|...+..|...   ++.-+.++|++.                   .+.+.+.+..++.+  +.+..  
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~---Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~  107 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASA---GVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVN  107 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHH---TCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHc---CCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEe
Confidence            46899999999999999999886   664455889987                   54333322222222  11111  


Q ss_pred             --cC--CHHHHhhCCCCCEEEEeCCCCcc-HHHHHHHHcCCCCCeEEE
Q 017143           63 --FP--GHQELLDSGLCDVVVVSTPNMTH-YQILMDIINHPKPHHVLV  105 (376)
Q Consensus        63 --~~--~~~~~l~~~~~D~V~i~t~~~~h-~~~~~~al~~~~g~~Vl~  105 (376)
                        ++  +.++++..  .|+|+.++++..- ..+...|.+  .|++++.
T Consensus       108 ~~~~~~~~~~~~~~--~DvVi~~~d~~~~~~~l~~~~~~--~~~p~i~  151 (249)
T 1jw9_B          108 ALLDDAELAALIAE--HDLVLDCTDNVAVRNQLNAGCFA--AKVPLVS  151 (249)
T ss_dssp             SCCCHHHHHHHHHT--SSEEEECCSSHHHHHHHHHHHHH--HTCCEEE
T ss_pred             ccCCHhHHHHHHhC--CCEEEEeCCCHHHHHHHHHHHHH--cCCCEEE
Confidence              22  34556665  8999999876432 333344555  5666555

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=96.96  E-value=0.0021  Score=60.23  Aligned_cols=69  Identities=22%  Similarity=0.260  Sum_probs=49.4

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC----------------CCccCCHHHHh
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP----------------LKVFPGHQELL   70 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~l   70 (376)
                      +||+|||+|.+|......|.+    +.+|+ ++|+++++   .+++.+. +.+                +..++++++.+
T Consensus         1 MkI~VIG~G~vG~~~A~~La~----G~~V~-~~d~~~~~---~~~l~~~-~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~   71 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL----QNEVT-IVDILPSK---VDKINNG-LSPIQDEYIEYYLKSKQLSIKATLDSKAAY   71 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT----TSEEE-EECSCHHH---HHHHHTT-CCSSCCHHHHHHHHHSCCCEEEESCHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHhC----CCEEE-EEECCHHH---HHHHHcC-CCCcCCCCHHHHHHhccCcEEEeCCHHHHh
Confidence            489999999999988777764    36755 57999884   4444332 221                13456777777


Q ss_pred             hCCCCCEEEEeCCCCc
Q 017143           71 DSGLCDVVVVSTPNMT   86 (376)
Q Consensus        71 ~~~~~D~V~i~t~~~~   86 (376)
                      ++  .|+|+||+|+..
T Consensus        72 ~~--aDvviiavpt~~   85 (402)
T 1dlj_A           72 KE--AELVIIATPTNY   85 (402)
T ss_dssp             HH--CSEEEECCCCCE
T ss_pred             cC--CCEEEEecCCCc
Confidence            75  899999999985

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=96.96  E-value=0.0017  Score=58.86  Aligned_cols=97  Identities=14%  Similarity=0.115  Sum_probs=58.4

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHH----H-hcC---C-CCCccCCHHHHhhCCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLA----N-AFD---W-PLKVFPGHQELLDSGLCD   76 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~----~-~~~---~-~~~~~~~~~~~l~~~~~D   76 (376)
                      ++||+|||+|.+|......|.+.   +.+|+ ++++++.  +..++..    . .++   + ++..+++.+++.+  +.|
T Consensus         2 ~mkI~IiGaGaiG~~~a~~L~~~---g~~V~-~~~r~~~--~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~--~~D   73 (320)
T 3i83_A            2 SLNILVIGTGAIGSFYGALLAKT---GHCVS-VVSRSDY--ETVKAKGIRIRSATLGDYTFRPAAVVRSAAELET--KPD   73 (320)
T ss_dssp             -CEEEEESCCHHHHHHHHHHHHT---TCEEE-EECSTTH--HHHHHHCEEEEETTTCCEEECCSCEESCGGGCSS--CCS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhC---CCeEE-EEeCChH--HHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCC--CCC
Confidence            37999999999999888888775   66766 5677652  2222210    0 111   0 1234567766643  489


Q ss_pred             EEEEeCCCCccHHHHHHHHcCC-CCCe-EEEecCCC
Q 017143           77 VVVVSTPNMTHYQILMDIINHP-KPHH-VLVEKPLC  110 (376)
Q Consensus        77 ~V~i~t~~~~h~~~~~~al~~~-~g~~-Vl~EKP~a  110 (376)
                      +|++++|+....+.+......- .+.. |.+-+-+.
T Consensus        74 lVilavK~~~~~~~l~~l~~~l~~~t~Iv~~~nGi~  109 (320)
T 3i83_A           74 CTLLCIKVVEGADRVGLLRDAVAPDTGIVLISNGID  109 (320)
T ss_dssp             EEEECCCCCTTCCHHHHHTTSCCTTCEEEEECSSSS
T ss_pred             EEEEecCCCChHHHHHHHHhhcCCCCEEEEeCCCCC
Confidence            9999999987666554432210 2333 44566654

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=96.95  E-value=0.0013  Score=59.79  Aligned_cols=68  Identities=24%  Similarity=0.342  Sum_probs=51.0

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ..+|||||+|.||+..+..+...   +.+|+ ++|+++++.+.    ..++|+.  .. ++++++++  .|+|++++|..
T Consensus       155 g~~vgIIG~G~iG~~iA~~l~~~---G~~V~-~~d~~~~~~~~----~~~~g~~--~~-~l~e~l~~--aDvVi~~vp~~  221 (330)
T 2gcg_A          155 QSTVGIIGLGRIGQAIARRLKPF---GVQRF-LYTGRQPRPEE----AAEFQAE--FV-STPELAAQ--SDFIVVACSLT  221 (330)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGG---TCCEE-EEESSSCCHHH----HHTTTCE--EC-CHHHHHHH--CSEEEECCCCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHC---CCEEE-EECCCCcchhH----HHhcCce--eC-CHHHHHhh--CCEEEEeCCCC
Confidence            46899999999999988888775   67766 57877653322    2345643  33 89999986  89999999976


Q ss_pred             c
Q 017143           86 T   86 (376)
Q Consensus        86 ~   86 (376)
                      .
T Consensus       222 ~  222 (330)
T 2gcg_A          222 P  222 (330)
T ss_dssp             T
T ss_pred             h
Confidence            3

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=96.94  E-value=0.0037  Score=56.55  Aligned_cols=76  Identities=14%  Similarity=0.144  Sum_probs=49.8

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCC-----------CCCccCCHHHHhhCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDW-----------PLKVFPGHQELLDSG   73 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~~~   73 (376)
                      .++||+|||+|.||......|.+.   +.+|+. + ++++.   .+++.++ |+           ++..+++.++ +.  
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~---G~~V~l-~-~~~~~---~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~-~~--   85 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARA---GHEVIL-I-ARPQH---VQAIEAT-GLRLETQSFDEQVKVSASSDPSA-VQ--   85 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHT---TCEEEE-E-CCHHH---HHHHHHH-CEEEECSSCEEEECCEEESCGGG-GT--
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHC---CCeEEE-E-EcHhH---HHHHHhC-CeEEEcCCCcEEEeeeeeCCHHH-cC--
Confidence            368999999999999988888775   677774 4 66663   4444332 21           1224566655 33  


Q ss_pred             CCCEEEEeCCCCccHHHHH
Q 017143           74 LCDVVVVSTPNMTHYQILM   92 (376)
Q Consensus        74 ~~D~V~i~t~~~~h~~~~~   92 (376)
                      +.|+|++++|+....+.+.
T Consensus        86 ~~D~vilavk~~~~~~~l~  104 (318)
T 3hwr_A           86 GADLVLFCVKSTDTQSAAL  104 (318)
T ss_dssp             TCSEEEECCCGGGHHHHHH
T ss_pred             CCCEEEEEcccccHHHHHH
Confidence            4899999999985444443

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=96.92  E-value=0.0023  Score=58.78  Aligned_cols=66  Identities=18%  Similarity=0.295  Sum_probs=50.8

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      .+|||||+|.||+..+..++..   +.+|+ ++|++...     +.+.+.|+   .+.+++++++.  .|+|++++|...
T Consensus       177 ktvGIIGlG~IG~~vA~~l~~f---G~~V~-~~d~~~~~-----~~~~~~g~---~~~~l~ell~~--aDvV~l~~Plt~  242 (365)
T 4hy3_A          177 SEIGIVGFGDLGKALRRVLSGF---RARIR-VFDPWLPR-----SMLEENGV---EPASLEDVLTK--SDFIFVVAAVTS  242 (365)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTS---CCEEE-EECSSSCH-----HHHHHTTC---EECCHHHHHHS--CSEEEECSCSSC
T ss_pred             CEEEEecCCcccHHHHHhhhhC---CCEEE-EECCCCCH-----HHHhhcCe---eeCCHHHHHhc--CCEEEEcCcCCH
Confidence            5899999999999998888776   78877 57887531     12234464   25789999997  899999999653

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=96.91  E-value=0.0072  Score=54.08  Aligned_cols=99  Identities=19%  Similarity=0.152  Sum_probs=64.0

Q ss_pred             eeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            7 VKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         7 ~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      .||+||| +|.||......+...   +.+++ ++|++++.                   +.++++.+  .|+|++|+|+.
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~---G~~V~-~~~~~~~~-------------------~~~~~~~~--aDvVilavp~~   76 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRAS---GYPIS-ILDREDWA-------------------VAESILAN--ADVVIVSVPIN   76 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTT---TCCEE-EECTTCGG-------------------GHHHHHTT--CSEEEECSCGG
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhC---CCeEE-EEECCccc-------------------CHHHHhcC--CCEEEEeCCHH
Confidence            5899999 999999998888775   56755 56876641                   35566665  89999999998


Q ss_pred             ccHHHHHHHHcCC-CCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeec
Q 017143           86 THYQILMDIINHP-KPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLE  136 (376)
Q Consensus        86 ~h~~~~~~al~~~-~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~  136 (376)
                      .-.+++.+....- .+ .|++.. .+......+++.+..    +..++.++.
T Consensus        77 ~~~~vl~~l~~~l~~~-~iv~~~-~svk~~~~~~~~~~~----~~~~v~~hP  122 (298)
T 2pv7_A           77 LTLETIERLKPYLTEN-MLLADL-TSVKREPLAKMLEVH----TGAVLGLHP  122 (298)
T ss_dssp             GHHHHHHHHGGGCCTT-SEEEEC-CSCCHHHHHHHHHHC----SSEEEEEEE
T ss_pred             HHHHHHHHHHhhcCCC-cEEEEC-CCCCcHHHHHHHHhc----CCCEEeeCC
Confidence            8666665543210 33 366664 234444444444432    245555544

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=96.91  E-value=0.0029  Score=57.48  Aligned_cols=73  Identities=25%  Similarity=0.214  Sum_probs=48.8

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHH-HHHHH---hcCCC--CCccCCHHHHhhCCCCCEE
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQA-LKLAN---AFDWP--LKVFPGHQELLDSGLCDVV   78 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~---~~~~~--~~~~~~~~~~l~~~~~D~V   78 (376)
                      +++||+|||+|.+|......++..  ..++ +.++|+++++++.. ..+..   .+..+  +..++++ +.+++  .|+|
T Consensus        13 ~~~kI~ViGaG~vG~~iA~~la~~--g~~~-V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~--aD~V   86 (328)
T 2hjr_A           13 MRKKISIIGAGQIGSTIALLLGQK--DLGD-VYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQN--SDVV   86 (328)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT--TCCE-EEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTT--CSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC--CCCe-EEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCC--CCEE
Confidence            357999999999999877777665  2337 77899998865431 12221   22222  3445788 56665  8999


Q ss_pred             EEeCC
Q 017143           79 VVSTP   83 (376)
Q Consensus        79 ~i~t~   83 (376)
                      +++.+
T Consensus        87 I~avg   91 (328)
T 2hjr_A           87 IITAG   91 (328)
T ss_dssp             EECCS
T ss_pred             EEcCC
Confidence            99984

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=96.90  E-value=0.0013  Score=60.06  Aligned_cols=74  Identities=16%  Similarity=0.142  Sum_probs=49.3

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-----------CCccCCHHHHhhCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-----------LKVFPGHQELLDSGL   74 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~   74 (376)
                      ++||+|||+|.+|......|.+.   +.+|+ +++++ +   ..+++. +.|+.           +..+++.+++ .  +
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~---g~~V~-~~~r~-~---~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~-~--~   70 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALA---GEAIN-VLARG-A---TLQALQ-TAGLRLTEDGATHTLPVRATHDAAAL-G--E   70 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHT---TCCEE-EECCH-H---HHHHHH-HTCEEEEETTEEEEECCEEESCHHHH-C--C
T ss_pred             CCEEEEECcCHHHHHHHHHHHHC---CCEEE-EEECh-H---HHHHHH-HCCCEEecCCCeEEEeeeEECCHHHc-C--C
Confidence            57999999999999988888775   56655 56774 3   233333 22321           1245677764 3  4


Q ss_pred             CCEEEEeCCCCccHHHH
Q 017143           75 CDVVVVSTPNMTHYQIL   91 (376)
Q Consensus        75 ~D~V~i~t~~~~h~~~~   91 (376)
                      .|+|++++|+....+.+
T Consensus        71 ~D~Vilavk~~~~~~~~   87 (335)
T 3ghy_A           71 QDVVIVAVKAPALESVA   87 (335)
T ss_dssp             CSEEEECCCHHHHHHHH
T ss_pred             CCEEEEeCCchhHHHHH
Confidence            89999999986444333

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=96.90  E-value=0.0018  Score=61.62  Aligned_cols=79  Identities=20%  Similarity=0.225  Sum_probs=52.7

Q ss_pred             ceeEEEEeCChhh--HHHHHHhhhhcC-CCcEEEEEeCCChhhHHHHHHHHHh----cCCC--CCccCCHHHHhhCCCCC
Q 017143            6 TVKYGIIGMGMMG--REHFINLHHLRS-QGVSVVCIADPHLQSRQQALKLANA----FDWP--LKVFPGHQELLDSGLCD   76 (376)
Q Consensus         6 ~~~v~iiG~G~~g--~~~~~~~~~~~~-~~~~~~~v~d~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~l~~~~~D   76 (376)
                      ++||+|||+|.+|  ...+..+..... ++.+ +.++|+++++++........    .+.+  +..++|+++.+++  .|
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~e-V~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~d--AD   79 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGST-VTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIID--AD   79 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCE-EEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT--CS
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCE-EEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCC--CC
Confidence            5799999999965  444445543211 2456 44899999876655444433    2333  3456789888876  89


Q ss_pred             EEEEeCCCCcc
Q 017143           77 VVVVSTPNMTH   87 (376)
Q Consensus        77 ~V~i~t~~~~h   87 (376)
                      +|+++.|....
T Consensus        80 ~VIiaagv~~~   90 (480)
T 1obb_A           80 FVINTAMVGGH   90 (480)
T ss_dssp             EEEECCCTTHH
T ss_pred             EEEECCCcccc
Confidence            99999987543

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=96.88  E-value=0.008  Score=57.32  Aligned_cols=75  Identities=24%  Similarity=0.335  Sum_probs=50.7

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh-------cC---------CCCCccCCHHHH
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA-------FD---------WPLKVFPGHQEL   69 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~-------~~---------~~~~~~~~~~~~   69 (376)
                      ..||+|||+|.||......++..   +++|+ ++|++++.++++.+..++       .|         ...+..++++ .
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~---G~~V~-l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~-~  111 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARV---GISVV-AVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTK-E  111 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT---TCEEE-EECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCGG-G
T ss_pred             CCEEEEECcCHHHHHHHHHHHhC---CCeEE-EEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCHH-H
Confidence            46899999999999888887764   78865 689999866554331100       01         0013456774 4


Q ss_pred             hhCCCCCEEEEeCCCCcc
Q 017143           70 LDSGLCDVVVVSTPNMTH   87 (376)
Q Consensus        70 l~~~~~D~V~i~t~~~~h   87 (376)
                      +++  .|+|++++|....
T Consensus       112 ~~~--aDlVIeaVpe~~~  127 (463)
T 1zcj_A          112 LST--VDLVVEAVFEDMN  127 (463)
T ss_dssp             GTT--CSEEEECCCSCHH
T ss_pred             HCC--CCEEEEcCCCCHH
Confidence            544  8999999998753

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=96.88  E-value=0.0012  Score=59.95  Aligned_cols=67  Identities=19%  Similarity=0.307  Sum_probs=50.8

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      -.+|||||+|.||+.....++..   +.+|+ ++|+++.+.+.    +.++|+.   +.+++++++.  .|+|++++|..
T Consensus       145 g~tvGIIG~G~IG~~vA~~l~~~---G~~V~-~~d~~~~~~~~----~~~~g~~---~~~l~ell~~--aDvV~l~~P~t  211 (330)
T 4e5n_A          145 NATVGFLGMGAIGLAMADRLQGW---GATLQ-YHEAKALDTQT----EQRLGLR---QVACSELFAS--SDFILLALPLN  211 (330)
T ss_dssp             TCEEEEECCSHHHHHHHHHTTTS---CCEEE-EECSSCCCHHH----HHHHTEE---ECCHHHHHHH--CSEEEECCCCS
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHC---CCEEE-EECCCCCcHhH----HHhcCce---eCCHHHHHhh--CCEEEEcCCCC
Confidence            46899999999999998888776   78876 57888743222    2344642   4589999987  89999999954

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=96.86  E-value=0.0019  Score=58.83  Aligned_cols=63  Identities=24%  Similarity=0.403  Sum_probs=48.2

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      -.+|||||+|.||+.....++..   +.+|+ ++|+++.+         ..+.  ..+.++++++++  .|+|++++|..
T Consensus       171 gktiGIIGlG~IG~~vA~~l~~~---G~~V~-~~dr~~~~---------~~~~--~~~~sl~ell~~--aDvVil~vP~t  233 (340)
T 4dgs_A          171 GKRIGVLGLGQIGRALASRAEAF---GMSVR-YWNRSTLS---------GVDW--IAHQSPVDLARD--SDVLAVCVAAS  233 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTT---TCEEE-EECSSCCT---------TSCC--EECSSHHHHHHT--CSEEEECC---
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC---CCEEE-EEcCCccc---------ccCc--eecCCHHHHHhc--CCEEEEeCCCC
Confidence            36899999999999988888775   78866 68888752         1232  356899999987  89999999943

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=96.86  E-value=0.0011  Score=60.30  Aligned_cols=64  Identities=19%  Similarity=0.313  Sum_probs=50.3

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ..+|||||+|.||+..+..+...   +.+|+ ++|++++..         .++  ..+.++++++++  .|+|++++|..
T Consensus       164 g~~vgIIG~G~iG~~vA~~l~~~---G~~V~-~~dr~~~~~---------~g~--~~~~~l~ell~~--aDvVil~vP~~  226 (333)
T 3ba1_A          164 GKRVGIIGLGRIGLAVAERAEAF---DCPIS-YFSRSKKPN---------TNY--TYYGSVVELASN--SDILVVACPLT  226 (333)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTT---TCCEE-EECSSCCTT---------CCS--EEESCHHHHHHT--CSEEEECSCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC---CCEEE-EECCCchhc---------cCc--eecCCHHHHHhc--CCEEEEecCCC
Confidence            46899999999999988888775   67765 588887621         143  357889999987  89999999975


Q ss_pred             c
Q 017143           86 T   86 (376)
Q Consensus        86 ~   86 (376)
                      .
T Consensus       227 ~  227 (333)
T 3ba1_A          227 P  227 (333)
T ss_dssp             G
T ss_pred             h
Confidence            3

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.85  E-value=0.0018  Score=50.72  Aligned_cols=88  Identities=18%  Similarity=0.237  Sum_probs=50.6

Q ss_pred             CCCCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC--CccCCHHHHhh--CCCCC
Q 017143            1 MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL--KVFPGHQELLD--SGLCD   76 (376)
Q Consensus         1 m~~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~--~~~~D   76 (376)
                      |...++.+|+|+|+|.+|...+..+...   +.+++ ++|+++++   .+.+. +.+...  .-..+.+.+.+  -.++|
T Consensus         1 m~~~~~~~v~I~G~G~iG~~~a~~l~~~---g~~v~-~~d~~~~~---~~~~~-~~~~~~~~~d~~~~~~l~~~~~~~~d   72 (144)
T 2hmt_A            1 MGRIKNKQFAVIGLGRFGGSIVKELHRM---GHEVL-AVDINEEK---VNAYA-SYATHAVIANATEENELLSLGIRNFE   72 (144)
T ss_dssp             -----CCSEEEECCSHHHHHHHHHHHHT---TCCCE-EEESCHHH---HHTTT-TTCSEEEECCTTCHHHHHTTTGGGCS
T ss_pred             CCCCcCCcEEEECCCHHHHHHHHHHHHC---CCEEE-EEeCCHHH---HHHHH-HhCCEEEEeCCCCHHHHHhcCCCCCC
Confidence            4444456799999999999998888775   56765 56787763   33332 223320  11233443322  13589


Q ss_pred             EEEEeCCCCcc--HHHHHHHHc
Q 017143           77 VVVVSTPNMTH--YQILMDIIN   96 (376)
Q Consensus        77 ~V~i~t~~~~h--~~~~~~al~   96 (376)
                      +|++++++..+  ...+..+.+
T Consensus        73 ~vi~~~~~~~~~~~~~~~~~~~   94 (144)
T 2hmt_A           73 YVIVAIGANIQASTLTTLLLKE   94 (144)
T ss_dssp             EEEECCCSCHHHHHHHHHHHHH
T ss_pred             EEEECCCCchHHHHHHHHHHHH
Confidence            99999997633  333444444

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=96.83  E-value=0.001  Score=59.22  Aligned_cols=63  Identities=19%  Similarity=0.273  Sum_probs=49.9

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      -.+|||||+|.||+.....++..   +.+|++ +|+++++.+         .+  ...+++++++++  .|+|++++|..
T Consensus       122 g~tvGIIGlG~IG~~vA~~l~~~---G~~V~~-~dr~~~~~~---------~~--~~~~~l~ell~~--aDiV~l~~P~t  184 (290)
T 3gvx_A          122 GKALGILGYGGIGRRVAHLAKAF---GMRVIA-YTRSSVDQN---------VD--VISESPADLFRQ--SDFVLIAIPLT  184 (290)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHH---TCEEEE-ECSSCCCTT---------CS--EECSSHHHHHHH--CSEEEECCCCC
T ss_pred             cchheeeccCchhHHHHHHHHhh---CcEEEE-Eeccccccc---------cc--cccCChHHHhhc--cCeEEEEeecc
Confidence            36899999999999999888887   888775 688775311         12  356799999987  89999999953

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=96.82  E-value=0.0042  Score=56.16  Aligned_cols=71  Identities=18%  Similarity=0.200  Sum_probs=48.0

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCc-EEEEEeCCChhhHHHH-HHHHH---hc--CCCCCccCCHHHHhhCCCCCEE
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGV-SVVCIADPHLQSRQQA-LKLAN---AF--DWPLKVFPGHQELLDSGLCDVV   78 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~-~~~~v~d~~~~~~~~~-~~~~~---~~--~~~~~~~~~~~~~l~~~~~D~V   78 (376)
                      ++||+|||+|.+|......+...   +. + +.++|+++++++.. ..+..   ..  ...+..++++ +.+++  .|+|
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~---g~~~-V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~--aDiV   76 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKD---NLAD-VVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISG--SDVV   76 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH---TCCE-EEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTT--CSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC---CCce-EEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCC--CCEE
Confidence            57999999999999888777775   44 7 66899998755431 12211   11  2222344777 56655  8999


Q ss_pred             EEeCC
Q 017143           79 VVSTP   83 (376)
Q Consensus        79 ~i~t~   83 (376)
                      +++.+
T Consensus        77 i~avg   81 (317)
T 2ewd_A           77 IITAS   81 (317)
T ss_dssp             EECCC
T ss_pred             EEeCC
Confidence            99994

>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3

Probab=96.82  E-value=0.011  Score=49.95  Aligned_cols=109  Identities=19%  Similarity=0.189  Sum_probs=78.5

Q ss_pred             ceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      .+|+.|+|+ |.||+..... ...  ++.+|++..|+...                   +    .+.  ++|+|+-.|.|
T Consensus        12 ~~~~~v~Ga~GrMG~~i~~~-~~~--~~~elv~~id~~~~-------------------~----~l~--~~DVvIDFT~P   63 (228)
T 1vm6_A           12 HMKYGIVGYSGRMGQEIQKV-FSE--KGHELVLKVDVNGV-------------------E----ELD--SPDVVIDFSSP   63 (228)
T ss_dssp             CCEEEEETTTSHHHHHHHHH-HHH--TTCEEEEEEETTEE-------------------E----ECS--CCSEEEECSCG
T ss_pred             cceeEEEEecCHHHHHHHHH-HhC--CCCEEEEEEcCCCc-------------------c----ccc--CCCEEEECCCH
Confidence            489999997 9999987654 444  78999999986431                   1    112  48999989999


Q ss_pred             CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHH
Q 017143           85 MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIV  150 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i  150 (376)
                      ..-.+.+..|++  +|+++.+=-.. .+.++..+|.+++ ++  +.+..+  ..|+-.+..+.+++
T Consensus        64 ~a~~~~~~~~~~--~g~~~ViGTTG-~~~~~~~~l~~~a-~~--~~vv~a--pNfSlGvnll~~l~  121 (228)
T 1vm6_A           64 EALPKTVDLCKK--YRAGLVLGTTA-LKEEHLQMLRELS-KE--VPVVQA--YNFSIGINVLKRFL  121 (228)
T ss_dssp             GGHHHHHHHHHH--HTCEEEECCCS-CCHHHHHHHHHHT-TT--SEEEEC--SCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH--cCCCEEEeCCC-CCHHHHHHHHHHH-hh--CCEEEe--ccccHHHHHHHHHH
Confidence            999999999999  89998886553 5777777777766 43  455554  45555554444444

>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10

Probab=96.80  E-value=0.0014  Score=59.74  Aligned_cols=114  Identities=12%  Similarity=0.177  Sum_probs=74.5

Q ss_pred             CceeEEEEeCChhhHHHHH---HhhhhcCCCcEEEEEeCCChhhHHHHHHHHH-----hcCCCCCccCCHHHHhhCCCCC
Q 017143            5 DTVKYGIIGMGMMGREHFI---NLHHLRSQGVSVVCIADPHLQSRQQALKLAN-----AFDWPLKVFPGHQELLDSGLCD   76 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~---~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~D   76 (376)
                      ..-|+.|.|.|.+|..+.+   .+.+.+ +..++|+++ ++..    .+.+.+     ..|++  .+.|++++++. .+|
T Consensus        21 ~~~~~vi~~~g~~g~~~aKta~gllr~~-~~~~iVgvi-~~~~----Gkd~ge~~~g~~~gip--v~~d~~~al~~-~~d   91 (350)
T 2g0t_A           21 PGTPAAIVAWGQLGTAHAKTTYGLLRHS-RLFKPVCVV-AEHE----GKMASDFVKPVRYDVP--VVSSVEKAKEM-GAE   91 (350)
T ss_dssp             TTEEEEEECTTTTTSGGGHHHHHHHHHC-SSEEEEEEE-SSCT----TCBGGGTCC-CCSCCB--EESSHHHHHHT-TCC
T ss_pred             cCCCEEEEeCCCCChHHHHHHHHHHhhC-CCCeEEEEe-ecCC----CCcHHHhhCCCCCCce--eeCCHHHHHhc-CCC
Confidence            3578999999998875554   334432 469999999 5432    122221     12444  88999999985 399


Q ss_pred             EEEEeCCCCc------cHHHHHHHHcCCCCCeEEE--ecCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 017143           77 VVVVSTPNMT------HYQILMDIINHPKPHHVLV--EKPLCTTVADCKKVVDAARKRPDILVQVG  134 (376)
Q Consensus        77 ~V~i~t~~~~------h~~~~~~al~~~~g~~Vl~--EKP~a~~~~e~~~l~~~a~~~~~~~~~v~  134 (376)
                      .++|++.+..      =.+.+.+|++  +|++|.+  +-|++    +-.+|.++|++ +|+.+...
T Consensus        92 ~lvig~a~~gg~l~~~~~~~I~~Al~--~G~nVvsglh~~l~----~~pel~~~A~~-~Gv~i~dv  150 (350)
T 2g0t_A           92 VLIIGVSNPGGYLEEQIATLVKKALS--LGMDVISGLHFKIS----QQTEFLKIAHE-NGTRIIDI  150 (350)
T ss_dssp             EEEECCCSCCHHHHHHHHHHHHHHHH--TTCEEEECCCC--C----CHHHHHHHHHH-HTCCEEES
T ss_pred             EEEEEecCCCCCCCHHHHHHHHHHHH--cCCcEEeCChhhhh----CCHHHHHHHHH-CCCEEEEe
Confidence            9999874432      2467889999  8999976  33443    33337777844 46666554

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=96.79  E-value=0.0074  Score=57.78  Aligned_cols=101  Identities=14%  Similarity=0.166  Sum_probs=63.2

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHH-H------hcCC-C----------CCccCCH
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLA-N------AFDW-P----------LKVFPGH   66 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~-~------~~~~-~----------~~~~~~~   66 (376)
                      +..||+|||+|.||......+++.   +++|+ ++|++++.++++.+.. +      +.|. +          +...+++
T Consensus         4 ~~~kVgVIGaG~MG~~IA~~la~a---G~~V~-l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (483)
T 3mog_A            4 NVQTVAVIGSGTMGAGIAEVAASH---GHQVL-LYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDI   79 (483)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHT---TCCEE-EECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCG
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHC---CCeEE-EEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCH
Confidence            356899999999999988888774   77765 6899998665543311 0      1121 0          1245677


Q ss_pred             HHHhhCCCCCEEEEeCCCCccH--HHHHH---HHcCCCCCeEEEecCCCCCHHH
Q 017143           67 QELLDSGLCDVVVVSTPNMTHY--QILMD---IINHPKPHHVLVEKPLCTTVAD  115 (376)
Q Consensus        67 ~~~l~~~~~D~V~i~t~~~~h~--~~~~~---al~~~~g~~Vl~EKP~a~~~~e  115 (376)
                      + .+++  .|+|+.+.|.....  ++..+   .++  .+ .|++----+.++.+
T Consensus        80 ~-~~~~--aDlVIeAVpe~~~vk~~v~~~l~~~~~--~~-~IlasntSti~i~~  127 (483)
T 3mog_A           80 H-ALAA--ADLVIEAASERLEVKKALFAQLAEVCP--PQ-TLLTTNTSSISITA  127 (483)
T ss_dssp             G-GGGG--CSEEEECCCCCHHHHHHHHHHHHHHSC--TT-CEEEECCSSSCHHH
T ss_pred             H-HhcC--CCEEEEcCCCcHHHHHHHHHHHHHhhc--cC-cEEEecCCCCCHHH
Confidence            5 4554  89999999998543  33333   334  33 45544333455543

>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A*

Probab=96.78  E-value=0.0031  Score=56.90  Aligned_cols=100  Identities=22%  Similarity=0.209  Sum_probs=65.0

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhh-cCCCcEEEEEeCC-ChhhHHHHHHHHH---hc---C-----------C---CCCcc
Q 017143            6 TVKYGIIGMGMMGREHFINLHHL-RSQGVSVVCIADP-HLQSRQQALKLAN---AF---D-----------W---PLKVF   63 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~-~~~~~~~~~v~d~-~~~~~~~~~~~~~---~~---~-----------~---~~~~~   63 (376)
                      ++||||.|.|.+|+..++.+... ..+++++++|-|. +++   ...-+.+   -+   .           +   ++.++
T Consensus         1 ~ikVaInGfGrIGr~v~r~l~~~~~~~~~evvaInd~~~~~---~~a~ll~ydS~hg~f~~~v~~~~~~l~v~g~~i~v~   77 (335)
T 1obf_O            1 TIRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPK---TNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVD   77 (335)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECSSCHH---HHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEE
T ss_pred             CcEEEEECCCHHHHHHHHHHHhcCCCCCcEEEEEeCCCCHH---HHHHHhccCCcCCCCCCCEEEeCCEEEECCEEEEEE
Confidence            37999999999999998887653 1258999999996 333   2212221   11   0           0   01122


Q ss_pred             --CCHHHHhh-CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCC
Q 017143           64 --PGHQELLD-SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPL  109 (376)
Q Consensus        64 --~~~~~~l~-~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~  109 (376)
                        .+.+++-. +.++|+|+-||+-....+.+..++++|+ |-|++--|.
T Consensus        78 ~~~dp~~~~w~~~gvDiV~estG~f~s~e~a~~h~~aGa-kkVviSaps  125 (335)
T 1obf_O           78 ANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGA-KKVIISAPG  125 (335)
T ss_dssp             CCSCGGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTC-SEEEESSCC
T ss_pred             EcCCcccCCccccCCCEEEEccCccccHHHHHHHHHcCC-CEEEECCcc
Confidence              13333322 2369999999999999999999999553 346665554

>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A*

Probab=96.75  E-value=0.0034  Score=56.79  Aligned_cols=97  Identities=25%  Similarity=0.324  Sum_probs=66.5

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCC-ChhhHHHHHHHHH---hcC------------C-----CCCcc--
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADP-HLQSRQQALKLAN---AFD------------W-----PLKVF--   63 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~-~~~~~~~~~~~~~---~~~------------~-----~~~~~--   63 (376)
                      +||||+|.|.+|+..++.+.+.   ++++++|-|. +.+   ....+.+   .+|            +     ++.++  
T Consensus         1 ikVgInG~G~IGr~vlr~l~~~---~~evvaind~~~~~---~~a~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~   74 (331)
T 2g82_O            1 MKVGINGFGRIGRQVFRILHSR---GVEVALINDLTDNK---TLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAV   74 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH---TCCEEEEECSSCHH---HHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhC---CCEEEEEecCCCHH---HHhHhhhccccCCCCCceEEEcCCEEEECCEEEEEEec
Confidence            5899999999999999988765   8999999986 333   2222222   122            0     01122  


Q ss_pred             CCHHHHh-hCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCC
Q 017143           64 PGHQELL-DSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLC  110 (376)
Q Consensus        64 ~~~~~~l-~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a  110 (376)
                      .+.+++- .+.++|+|+-||+...-.+.+.+.+++| -|-|++.-|..
T Consensus        75 ~dp~~l~w~~~gvDiV~estG~~~s~e~a~~~l~aG-akkvVIsaps~  121 (331)
T 2g82_O           75 KDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGG-AKKVIITAPAK  121 (331)
T ss_dssp             SSGGGSCTTTTTEEEEEECSSSCCBHHHHTHHHHTT-CSEEEESSCCB
T ss_pred             CChhhCcccccCCCEEEECCCchhhHHHHHHHHHCC-CCEEEECCCCc
Confidence            1333332 2236899999999999999999999944 25688877765

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=96.75  E-value=0.011  Score=54.48  Aligned_cols=98  Identities=14%  Similarity=0.181  Sum_probs=67.1

Q ss_pred             ceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc---CCHHHHhhC---CCCCEE
Q 017143            6 TVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF---PGHQELLDS---GLCDVV   78 (376)
Q Consensus         6 ~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~---~~~D~V   78 (376)
                      --+|.|+| +|.+|...+..++..  .+.+++++ ++++++++    +++++|.+ .++   +++.+.+.+   ..+|+|
T Consensus       172 g~~VlV~Ga~G~vG~~a~qlak~~--~g~~Vi~~-~~~~~~~~----~~~~lGad-~vi~~~~~~~~~v~~~~~~g~Dvv  243 (363)
T 4dvj_A          172 APAILIVGGAGGVGSIAVQIARQR--TDLTVIAT-ASRPETQE----WVKSLGAH-HVIDHSKPLAAEVAALGLGAPAFV  243 (363)
T ss_dssp             EEEEEEESTTSHHHHHHHHHHHHH--CCSEEEEE-CSSHHHHH----HHHHTTCS-EEECTTSCHHHHHHTTCSCCEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHh--cCCEEEEE-eCCHHHHH----HHHHcCCC-EEEeCCCCHHHHHHHhcCCCceEE
Confidence            35799999 899998877776665  57787764 56666433    34556765 222   344444432   358999


Q ss_pred             EEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCC
Q 017143           79 VVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTT  112 (376)
Q Consensus        79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~  112 (376)
                      +-++......+.+.++++.+ |+-|++..|...+
T Consensus       244 id~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~~~  276 (363)
T 4dvj_A          244 FSTTHTDKHAAEIADLIAPQ-GRFCLIDDPSAFD  276 (363)
T ss_dssp             EECSCHHHHHHHHHHHSCTT-CEEEECSCCSSCC
T ss_pred             EECCCchhhHHHHHHHhcCC-CEEEEECCCCccc
Confidence            99998777778888888864 7888887665544

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=96.74  E-value=0.004  Score=57.65  Aligned_cols=104  Identities=14%  Similarity=0.141  Sum_probs=64.2

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhhcC--C-C-cEEEEEeCCChhhH--HHHHHHHHh-----c--C--CC--CCccCCH
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHLRS--Q-G-VSVVCIADPHLQSR--QQALKLANA-----F--D--WP--LKVFPGH   66 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~--~-~-~~~~~v~d~~~~~~--~~~~~~~~~-----~--~--~~--~~~~~~~   66 (376)
                      .+++||+|||+|.||......+.++..  + . -..|-+|.++++..  ..++.+..+     |  |  +|  +..++|+
T Consensus        32 ~~p~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl  111 (391)
T 4fgw_A           32 EKPFKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDL  111 (391)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCH
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCH
Confidence            467899999999999987777765410  0 0 12355787776521  012222221     1  2  22  3567899


Q ss_pred             HHHhhCCCCCEEEEeCCCCccHHHHHHHHcCC-CCCe-EEEecCC
Q 017143           67 QELLDSGLCDVVVVSTPNMTHYQILMDIINHP-KPHH-VLVEKPL  109 (376)
Q Consensus        67 ~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~-~g~~-Vl~EKP~  109 (376)
                      ++.+++  .|+|++++|.+.-.+.+.+....- .+.. |.|-|=+
T Consensus       112 ~~al~~--ad~ii~avPs~~~r~~l~~l~~~~~~~~~iv~~~KGi  154 (391)
T 4fgw_A          112 IDSVKD--VDIIVFNIPHQFLPRICSQLKGHVDSHVRAISCLKGF  154 (391)
T ss_dssp             HHHHTT--CSEEEECSCGGGHHHHHHHHTTTSCTTCEEEECCCSC
T ss_pred             HHHHhc--CCEEEEECChhhhHHHHHHhccccCCCceeEEecccc
Confidence            999987  899999999988777777653210 3333 4455655

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=96.73  E-value=0.0049  Score=55.77  Aligned_cols=74  Identities=22%  Similarity=0.200  Sum_probs=48.5

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhhcCCCc-EEEEEeCCChhhHH-HHHHHHHh---c--CCCCCccCCHHHHhhCCCCC
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHLRSQGV-SVVCIADPHLQSRQ-QALKLANA---F--DWPLKVFPGHQELLDSGLCD   76 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~-~~~~v~d~~~~~~~-~~~~~~~~---~--~~~~~~~~~~~~~l~~~~~D   76 (376)
                      |+++||+|||+|.+|......+...   +. + +.++|+++++.+ .+.++...   .  +..+..++++ +.+++  .|
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~---~~~~-v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~--aD   77 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLK---ELGD-VVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEG--AD   77 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHT---TCCE-EEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTT--CS
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhC---CCCe-EEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCC--CC
Confidence            4568999999999999877777665   33 6 458899987542 22233221   1  2222345777 56655  89


Q ss_pred             EEEEeCCC
Q 017143           77 VVVVSTPN   84 (376)
Q Consensus        77 ~V~i~t~~   84 (376)
                      +|+|+...
T Consensus        78 iVIiaag~   85 (324)
T 3gvi_A           78 VVIVTAGV   85 (324)
T ss_dssp             EEEECCSC
T ss_pred             EEEEccCc
Confidence            99999753

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=96.73  E-value=0.0042  Score=56.12  Aligned_cols=78  Identities=22%  Similarity=0.302  Sum_probs=49.6

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHH-HHHHHHHh--cCCCCCccCCHHHHhhCCCCCEEEE
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQ-QALKLANA--FDWPLKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      .+++||+|||+|.+|...+..+...  +-+.-+.++|+++++++ .+..+...  +..+++.+.+-.+.+++  .|+|++
T Consensus         3 ~~~~KI~IiGaG~vG~~~a~~l~~~--~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~--aDvVii   78 (318)
T 1ez4_A            3 PNHQKVVLVGDGAVGSSYAFAMAQQ--GIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKD--ADLVVI   78 (318)
T ss_dssp             TTBCEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTT--CSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHcC--CCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCC--CCEEEE
Confidence            4568999999999999877777665  44444668899887554 23344322  22222233333444655  899999


Q ss_pred             eCCCC
Q 017143           81 STPNM   85 (376)
Q Consensus        81 ~t~~~   85 (376)
                      +.+..
T Consensus        79 ~ag~~   83 (318)
T 1ez4_A           79 TAGAP   83 (318)
T ss_dssp             CCCC-
T ss_pred             CCCCC
Confidence            98754

>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, structural genomi pathogenic protozoa consortium; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O*

Probab=96.72  E-value=0.0044  Score=56.01  Aligned_cols=100  Identities=25%  Similarity=0.310  Sum_probs=65.4

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCC--ChhhHHHHHHHHHhcCC-------C--------------C
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADP--HLQSRQQALKLANAFDW-------P--------------L   60 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~--~~~~~~~~~~~~~~~~~-------~--------------~   60 (376)
                      |.++||||-|.|.||+..++++...  ++++|++|-|+  +++.   ..-+. +|.-       .              +
T Consensus         9 ~~~~kv~INGfGrIGr~v~ra~~~~--~~~evvaInd~~~~~~~---~a~l~-~yDS~hg~~~~~v~~~~~~l~v~Gk~i   82 (345)
T 2b4r_O            9 MAATKLGINGFGRIGRLVFRAAFGR--KDIEVVAINDPFMDLNH---LCYLL-KYDSVHGQFPCEVTHADGFLLIGEKKV   82 (345)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHTC--SSEEEEEEECTTCCHHH---HHHHH-HCCTTTCSCSSCEEEETTEEEESSCEE
T ss_pred             hhheEEEEeCCchHHHHHHHHHhhC--CCcEEEEEcCCCCChHH---HHHHh-ccCCCCCcCCCCEEEcCCEEEECCEEE
Confidence            3479999999999999999988776  89999999993  4442   22121 1210       0              0


Q ss_pred             CccC--CHHHHhh-CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCC
Q 017143           61 KVFP--GHQELLD-SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLC  110 (376)
Q Consensus        61 ~~~~--~~~~~l~-~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a  110 (376)
                      .++.  +.+++-. +.++|+|+-||+-..-.+.+..++++|+ |-|++.-|.+
T Consensus        83 ~v~~~~dp~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGa-kkVVIsaps~  134 (345)
T 2b4r_O           83 SVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGA-KKVIMSAPPK  134 (345)
T ss_dssp             EEECCSSGGGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTC-SEEEESSCCS
T ss_pred             EEEEcCCcccCcccccCCCEEEECcCccccHhhHHHHHHCCC-CEEEECCCCC
Confidence            1111  2222211 1169999999999999999999999553 4467766643

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=96.71  E-value=0.0048  Score=55.65  Aligned_cols=75  Identities=19%  Similarity=0.182  Sum_probs=50.0

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCC------------CCCccCCHHHHhhCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDW------------PLKVFPGHQELLDSGL   74 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~~~~   74 (376)
                      +||+|||+|.+|......|.+.   +.+|+ ++++++  .+   ++. +.|+            ++..+++.++ +.  .
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~---g~~V~-~~~r~~--~~---~i~-~~g~~~~~~~g~~~~~~~~~~~~~~~-~~--~   69 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRS---GEDVH-FLLRRD--YE---AIA-GNGLKVFSINGDFTLPHVKGYRAPEE-IG--P   69 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHT---SCCEE-EECSTT--HH---HHH-HTCEEEEETTCCEEESCCCEESCHHH-HC--C
T ss_pred             CEEEEECcCHHHHHHHHHHHHC---CCeEE-EEEcCc--HH---HHH-hCCCEEEcCCCeEEEeeceeecCHHH-cC--C
Confidence            7999999999999988888775   56655 567765  22   222 2222            1234566665 33  4


Q ss_pred             CCEEEEeCCCCccHHHHHHH
Q 017143           75 CDVVVVSTPNMTHYQILMDI   94 (376)
Q Consensus        75 ~D~V~i~t~~~~h~~~~~~a   94 (376)
                      .|+|++++|+....+.+...
T Consensus        70 ~D~vilavk~~~~~~~l~~l   89 (312)
T 3hn2_A           70 MDLVLVGLKTFANSRYEELI   89 (312)
T ss_dssp             CSEEEECCCGGGGGGHHHHH
T ss_pred             CCEEEEecCCCCcHHHHHHH
Confidence            89999999998776665544

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=96.70  E-value=0.0031  Score=57.50  Aligned_cols=145  Identities=12%  Similarity=0.138  Sum_probs=89.4

Q ss_pred             ceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc-CCHHHHhhCCCCCEEEEeCC
Q 017143            6 TVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF-PGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         6 ~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~D~V~i~t~   83 (376)
                      ++|||||| +|..|...++.|..+  |.++|+.+.+++..-. +..++-..+..+..+. .+.++++.+  +|+|+.|+|
T Consensus        13 ~~~V~IvGAtG~vG~ellrlL~~h--P~~el~~l~S~~~aG~-~~~~~~p~~~~~l~~~~~~~~~~~~~--~Dvvf~alp   87 (351)
T 1vkn_A           13 MIRAGIIGATGYTGLELVRLLKNH--PEAKITYLSSRTYAGK-KLEEIFPSTLENSILSEFDPEKVSKN--CDVLFTALP   87 (351)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHC--TTEEEEEEECSTTTTS-BHHHHCGGGCCCCBCBCCCHHHHHHH--CSEEEECCS
T ss_pred             eeEEEEECCCCHHHHHHHHHHHcC--CCcEEEEEeCcccccC-ChHHhChhhccCceEEeCCHHHhhcC--CCEEEECCC
Confidence            79999999 599999999999998  9999999987543311 1111111121111121 245565544  899999999


Q ss_pred             CCccHHHHHHHHcCCCCCeEEEecCCCCCHH--H---------------------HHHHHHHHHhCCCeEEEEeeccccC
Q 017143           84 NMTHYQILMDIINHPKPHHVLVEKPLCTTVA--D---------------------CKKVVDAARKRPDILVQVGLEYRYM  140 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~--e---------------------~~~l~~~a~~~~~~~~~v~~~~r~~  140 (376)
                      +..-.+++.++ +   |. +.++-..+.-.+  +                     .-|+-+..-+..  .+..+.++.-.
T Consensus        88 ~~~s~~~~~~~-~---g~-~VIDlSsdfRl~~~~~y~~~y~~~h~~p~~~~~~yglPE~n~e~i~~a--~iIANPgC~~t  160 (351)
T 1vkn_A           88 AGASYDLVREL-K---GV-KIIDLGADFRFDDPGVYREWYGKELSGYENIKRVYGLPELHREEIKNA--QVVGNPGCYPT  160 (351)
T ss_dssp             TTHHHHHHTTC-C---SC-EEEESSSTTTCSSHHHHHHHHCCCCTTGGGCCEEECCHHHHHHHHTTC--SEEECCCHHHH
T ss_pred             cHHHHHHHHHh-C---CC-EEEECChhhhCCchhhhhhhcCCCCCchhhcCCceECCccCHHHhccC--CEEeCCChHHH
Confidence            99888888877 3   33 355554432111  1                     122333321332  35555555556


Q ss_pred             HHHHHHHHHHHcCCCC--ceEEEE
Q 017143          141 PPVAKLIQIVKSGSIG--QVKMVA  162 (376)
Q Consensus       141 p~~~~~k~~i~~g~iG--~i~~~~  162 (376)
                      -....++-+++.|.|.  +|..-.
T Consensus       161 ~~~laL~PL~~~~~i~~~~iiv~t  184 (351)
T 1vkn_A          161 SVILALAPALKHNLVDPETILVDA  184 (351)
T ss_dssp             HHHHHHHHHHHTTCSCCSEEEEEE
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEEE
Confidence            6788889999998887  654333

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=96.67  E-value=0.0046  Score=56.29  Aligned_cols=66  Identities=17%  Similarity=0.303  Sum_probs=50.3

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ..+|||||+|.||+..+..++..   +.+|+ ++|+++++.  +    .++ +  ...++++++++.  .|+|++++|..
T Consensus       146 g~~vgIiG~G~IG~~~A~~l~~~---G~~V~-~~d~~~~~~--~----~~~-~--~~~~~l~ell~~--aDvV~l~~p~~  210 (333)
T 1j4a_A          146 DQVVGVVGTGHIGQVFMQIMEGF---GAKVI-TYDIFRNPE--L----EKK-G--YYVDSLDDLYKQ--ADVISLHVPDV  210 (333)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHT---TCEEE-EECSSCCHH--H----HHT-T--CBCSCHHHHHHH--CSEEEECSCCC
T ss_pred             CCEEEEEccCHHHHHHHHHHHHC---CCEEE-EECCCcchh--H----Hhh-C--eecCCHHHHHhh--CCEEEEcCCCc
Confidence            36899999999999998888876   78876 578887632  1    222 3  244589999986  89999999965


Q ss_pred             c
Q 017143           86 T   86 (376)
Q Consensus        86 ~   86 (376)
                      .
T Consensus       211 ~  211 (333)
T 1j4a_A          211 P  211 (333)
T ss_dssp             G
T ss_pred             H
Confidence            3

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=95.69  E-value=0.00028  Score=59.47  Aligned_cols=67  Identities=22%  Similarity=0.211  Sum_probs=47.9

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      +.+||+|||+|.||..+...+.+.   +.+++ +++++++ .   +.+. ..++.  .. +.+++++.  .|+|++++|+
T Consensus        18 ~~~~I~iIG~G~mG~~la~~L~~~---G~~V~-~~~r~~~-~---~~~~-~~g~~--~~-~~~~~~~~--aDvVilav~~   83 (201)
T 2yjz_A           18 KQGVVCIFGTGDFGKSLGLKMLQC---GYSVV-FGSRNPQ-V---SSLL-PRGAE--VL-CYSEAASR--SDVIVLAVHR   83 (201)
Confidence            357899999999999988888764   56655 5788765 2   2222 23543  44 67777765  8999999997


Q ss_pred             C
Q 017143           85 M   85 (376)
Q Consensus        85 ~   85 (376)
                      +
T Consensus        84 ~   84 (201)
T 2yjz_A           84 E   84 (201)
Confidence            5

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=96.64  E-value=0.0039  Score=56.47  Aligned_cols=75  Identities=16%  Similarity=0.200  Sum_probs=47.7

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHH-HHHHHHHhcC---CCCCccC-CHHHHhhCCCCCEEE
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQ-QALKLANAFD---WPLKVFP-GHQELLDSGLCDVVV   79 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~~~~~---~~~~~~~-~~~~~l~~~~~D~V~   79 (376)
                      +.+||+|||+|.+|...+..++..  +-+.-+.++|+++++++ .+.++.....   .+++.++ +++ .+++  .|+|+
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~~--~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~-a~~~--aDvVv   78 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALINQ--GITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYE-DCKD--ADIVC   78 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGG-GGTT--CSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC--CCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHH-HhCC--CCEEE
Confidence            468999999999999888888776  44434557899887543 2233433211   1122333 443 4554  89999


Q ss_pred             EeCCC
Q 017143           80 VSTPN   84 (376)
Q Consensus        80 i~t~~   84 (376)
                      |+...
T Consensus        79 i~ag~   83 (326)
T 3pqe_A           79 ICAGA   83 (326)
T ss_dssp             ECCSC
T ss_pred             Eeccc
Confidence            98753

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=96.62  E-value=0.0081  Score=55.29  Aligned_cols=143  Identities=13%  Similarity=0.085  Sum_probs=85.9

Q ss_pred             ceeEEEEe-CChhhHHHHH-HhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc--CCHHHHhhCCCCCEEEEe
Q 017143            6 TVKYGIIG-MGMMGREHFI-NLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF--PGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         6 ~~~v~iiG-~G~~g~~~~~-~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~D~V~i~   81 (376)
                      |+||||+| +|.+|+..+. .+.+..-+.++++.+..++.-     +.+....|.++...  ++.++ ++  ++|+|+.|
T Consensus         1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~G-----~~v~~~~g~~i~~~~~~~~~~-~~--~~DvVf~a   72 (367)
T 1t4b_A            1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLG-----QAAPSFGGTTGTLQDAFDLEA-LK--ALDIIVTC   72 (367)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTT-----SBCCGGGTCCCBCEETTCHHH-HH--TCSEEEEC
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCCC-----CCccccCCCceEEEecCChHH-hc--CCCEEEEC
Confidence            36999999 8999999998 444431135677766654321     11110112222222  24444 34  49999999


Q ss_pred             CCCCccHHHHHHHHcCCCCC-eEEEecCCCCC--------HHHH-HHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHH
Q 017143           82 TPNMTHYQILMDIINHPKPH-HVLVEKPLCTT--------VADC-KKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVK  151 (376)
Q Consensus        82 t~~~~h~~~~~~al~~~~g~-~Vl~EKP~a~~--------~~e~-~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~  151 (376)
                      +|.....+++..+++  +|. -+.+.-|.+.-        +.|. .+-++.++.+ |+.+..+-++.-......++-+.+
T Consensus        73 ~g~~~s~~~a~~~~~--~G~k~vVID~ss~~R~~~~~~~~vpevN~~~i~~~~~~-g~~~Ianp~Cttt~~~~al~pL~~  149 (367)
T 1t4b_A           73 QGGDYTNEIYPKLRE--SGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNN-GIRTFVGGNCTVSLMLMSLGGLFA  149 (367)
T ss_dssp             SCHHHHHHHHHHHHH--TTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHT-TCCEEEECCHHHHHHHHHHHHHHH
T ss_pred             CCchhHHHHHHHHHH--CCCCEEEEcCChhhccCCCCcEEeCCcCHHHHhhhhhc-CCCEEEeCCHHHHHHHHHHHHHHH
Confidence            999999999999999  664 47887665521        1222 1222222123 434555666666777778888888


Q ss_pred             cCCCCceE
Q 017143          152 SGSIGQVK  159 (376)
Q Consensus       152 ~g~iG~i~  159 (376)
                      .+.|-++.
T Consensus       150 ~~~I~~~~  157 (367)
T 1t4b_A          150 NDLVDWVS  157 (367)
T ss_dssp             TTCEEEEE
T ss_pred             cCCCcEEE
Confidence            76554443

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=96.62  E-value=0.0071  Score=57.27  Aligned_cols=80  Identities=19%  Similarity=0.112  Sum_probs=52.7

Q ss_pred             ceeEEEEeCChh-hHHHHHHhhhh-cCCCcEEEEEeCCCh--hhHHHHHHHHHh----cCCC--CCccCCHHHHhhCCCC
Q 017143            6 TVKYGIIGMGMM-GREHFINLHHL-RSQGVSVVCIADPHL--QSRQQALKLANA----FDWP--LKVFPGHQELLDSGLC   75 (376)
Q Consensus         6 ~~~v~iiG~G~~-g~~~~~~~~~~-~~~~~~~~~v~d~~~--~~~~~~~~~~~~----~~~~--~~~~~~~~~~l~~~~~   75 (376)
                      ++||+|||+|.+ |...+..+... .+-...-+.++|+++  ++.+....++..    .+.+  +..++|+++.+++  .
T Consensus         7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~g--A   84 (450)
T 1s6y_A            7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDG--A   84 (450)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT--C
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCC--C
Confidence            689999999997 55554445442 111134466899999  865543334433    3444  3446799888886  8


Q ss_pred             CEEEEeCCCCcc
Q 017143           76 DVVVVSTPNMTH   87 (376)
Q Consensus        76 D~V~i~t~~~~h   87 (376)
                      |+|+++.+....
T Consensus        85 D~VVitagv~~~   96 (450)
T 1s6y_A           85 DFVTTQFRVGGL   96 (450)
T ss_dssp             SEEEECCCTTHH
T ss_pred             CEEEEcCCCCCC
Confidence            999999997543

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=96.61  E-value=0.0021  Score=58.12  Aligned_cols=80  Identities=20%  Similarity=0.326  Sum_probs=43.9

Q ss_pred             CCCC-CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHH-HHHHHHHh--cCCCCCcc-CCHHHHhhCCCC
Q 017143            1 MAAN-DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQ-QALKLANA--FDWPLKVF-PGHQELLDSGLC   75 (376)
Q Consensus         1 m~~~-~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~~~--~~~~~~~~-~~~~~~l~~~~~   75 (376)
                      |.|+ +++||+|||+|.+|...+..+...  +-+.-+.++|+++++++ .+.++...  +..+++.. ++++ .+++  .
T Consensus         1 ~~m~~~~~KI~IiGaG~vG~~~a~~l~~~--~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~-a~~~--a   75 (318)
T 1y6j_A            1 MEMVKSRSKVAIIGAGFVGASAAFTMALR--QTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYS-DVKD--C   75 (318)
T ss_dssp             ------CCCEEEECCSHHHHHHHHHHHHT--TCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGG-GGTT--C
T ss_pred             CCCCCCCCEEEEECCCHHHHHHHHHHHhC--CCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHH-HhCC--C
Confidence            4433 368999999999999877777665  33334557899886432 23333322  11111122 3443 4554  8


Q ss_pred             CEEEEeCCCC
Q 017143           76 DVVVVSTPNM   85 (376)
Q Consensus        76 D~V~i~t~~~   85 (376)
                      |+|+|+.+..
T Consensus        76 DvVii~~g~p   85 (318)
T 1y6j_A           76 DVIVVTAGAN   85 (318)
T ss_dssp             SEEEECCCC-
T ss_pred             CEEEEcCCCC
Confidence            9999998864

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=96.61  E-value=0.0085  Score=54.75  Aligned_cols=91  Identities=14%  Similarity=0.136  Sum_probs=61.3

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc---CCHHHHhh----CCCCCEEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF---PGHQELLD----SGLCDVVV   79 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~----~~~~D~V~   79 (376)
                      -+|.|+|+|.+|...+..++..  .+.++++ +++++++++    +++++|.+ .++   +++.+.+.    ...+|+|+
T Consensus       173 ~~vlv~GaG~vG~~a~qla~~~--g~~~Vi~-~~~~~~~~~----~~~~lGa~-~~i~~~~~~~~~v~~~t~g~g~d~v~  244 (345)
T 3jv7_A          173 STAVVIGVGGLGHVGIQILRAV--SAARVIA-VDLDDDRLA----LAREVGAD-AAVKSGAGAADAIRELTGGQGATAVF  244 (345)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH--CCCEEEE-EESCHHHHH----HHHHTTCS-EEEECSTTHHHHHHHHHGGGCEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHc--CCCEEEE-EcCCHHHHH----HHHHcCCC-EEEcCCCcHHHHHHHHhCCCCCeEEE
Confidence            4799999999999877776666  5677775 466776433    45566765 222   22322222    23699999


Q ss_pred             EeCCCCccHHHHHHHHcCCCCCeEEEe
Q 017143           80 VSTPNMTHYQILMDIINHPKPHHVLVE  106 (376)
Q Consensus        80 i~t~~~~h~~~~~~al~~~~g~~Vl~E  106 (376)
                      -++......+.+.++++.+ |+-|++-
T Consensus       245 d~~G~~~~~~~~~~~l~~~-G~iv~~G  270 (345)
T 3jv7_A          245 DFVGAQSTIDTAQQVVAVD-GHISVVG  270 (345)
T ss_dssp             ESSCCHHHHHHHHHHEEEE-EEEEECS
T ss_pred             ECCCCHHHHHHHHHHHhcC-CEEEEEC
Confidence            9999887888888888743 6666654

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=96.59  E-value=0.0024  Score=57.74  Aligned_cols=66  Identities=20%  Similarity=0.317  Sum_probs=49.4

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-CCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      -.+|||||+|.||+.....++..   +.+|++ +|+++..   ..      .+. ...+.++++++++  .|+|++++|.
T Consensus       140 g~tvGIIGlG~IG~~vA~~l~~~---G~~V~~-~dr~~~~---~~------~~~~~~~~~~l~ell~~--aDvV~l~lPl  204 (324)
T 3hg7_A          140 GRTLLILGTGSIGQHIAHTGKHF---GMKVLG-VSRSGRE---RA------GFDQVYQLPALNKMLAQ--ADVIVSVLPA  204 (324)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT---TCEEEE-ECSSCCC---CT------TCSEEECGGGHHHHHHT--CSEEEECCCC
T ss_pred             cceEEEEEECHHHHHHHHHHHhC---CCEEEE-EcCChHH---hh------hhhcccccCCHHHHHhh--CCEEEEeCCC
Confidence            36899999999999998888876   888774 6887642   11      111 1235789999987  8999999995


Q ss_pred             Cc
Q 017143           85 MT   86 (376)
Q Consensus        85 ~~   86 (376)
                      ..
T Consensus       205 t~  206 (324)
T 3hg7_A          205 TR  206 (324)
T ss_dssp             CS
T ss_pred             CH
Confidence            43

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=96.59  E-value=0.0046  Score=56.23  Aligned_cols=65  Identities=25%  Similarity=0.435  Sum_probs=49.6

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ..++||||+|.+|+.....++..   +.++++ +|+....  .    ..+.++   .+.+++++|++  .|+|++++|-.
T Consensus       141 g~tvGIiG~G~IG~~va~~~~~f---g~~v~~-~d~~~~~--~----~~~~~~---~~~~l~ell~~--sDivslh~Plt  205 (334)
T 3kb6_A          141 RLTLGVIGTGRIGSRVAMYGLAF---GMKVLC-YDVVKRE--D----LKEKGC---VYTSLDELLKE--SDVISLHVPYT  205 (334)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHT---TCEEEE-ECSSCCH--H----HHHTTC---EECCHHHHHHH--CSEEEECCCCC
T ss_pred             CcEEEEECcchHHHHHHHhhccc---Cceeee-cCCccch--h----hhhcCc---eecCHHHHHhh--CCEEEEcCCCC
Confidence            35899999999999988888776   889875 6776542  1    122343   46899999998  79999999943

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=96.59  E-value=0.0065  Score=54.66  Aligned_cols=72  Identities=25%  Similarity=0.168  Sum_probs=48.4

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHH-HHHHHHh---c--CCCCCccCCHHHHhhCCCCCEEEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQ-ALKLANA---F--DWPLKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~---~--~~~~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      +||+|||+|.+|...+..++..  +.++ +.++|+++++++. +.++...   .  ...+..++++ +.+++  .|+|++
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~--g~~~-v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~--aD~Vi~   76 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAK--ELGD-IVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTAN--SDVIVV   76 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCSE-EEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTT--CSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCCe-EEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCC--CCEEEE
Confidence            6999999999999887777765  3347 7789999875532 2233221   1  2222334788 55665  899999


Q ss_pred             eCCC
Q 017143           81 STPN   84 (376)
Q Consensus        81 ~t~~   84 (376)
                      +.+.
T Consensus        77 a~g~   80 (309)
T 1ur5_A           77 TSGA   80 (309)
T ss_dssp             CCCC
T ss_pred             cCCC
Confidence            9754

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=96.59  E-value=0.0073  Score=55.65  Aligned_cols=147  Identities=12%  Similarity=0.106  Sum_probs=89.6

Q ss_pred             CceeEEEEeC-ChhhHHHHH-HhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC--CCccCCHHHHhhCCCCCEEEE
Q 017143            5 DTVKYGIIGM-GMMGREHFI-NLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP--LKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         5 ~~~~v~iiG~-G~~g~~~~~-~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      .++||||||+ |..|...++ .|.++.-+.++++.+.+++.-     +.+..-.+..  +.-.++.++ ++  ++|+|+.
T Consensus         3 ~~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~aG-----~~~~~~~~~~~~v~~~~~~~~-~~--~vDvvf~   74 (377)
T 3uw3_A            3 GSMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSNAG-----GKAPSFAKNETTLKDATSIDD-LK--KCDVIIT   74 (377)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSCTT-----SBCCTTCCSCCBCEETTCHHH-HH--TCSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEechhcC-----CCHHHcCCCceEEEeCCChhH-hc--CCCEEEE
Confidence            3689999995 888999998 777772237898888776322     1111001111  111123334 34  4999999


Q ss_pred             eCCCCccHHHHHHHHcCCCCC-eEEEecCCCCC--------HHHH-HHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHH
Q 017143           81 STPNMTHYQILMDIINHPKPH-HVLVEKPLCTT--------VADC-KKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIV  150 (376)
Q Consensus        81 ~t~~~~h~~~~~~al~~~~g~-~Vl~EKP~a~~--------~~e~-~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i  150 (376)
                      |+|+..-.+.+.++++  +|. -+.+.-|.+.-        +.|. .+-++.++++ ++.+..+.++.-.-....++-+.
T Consensus        75 a~~~~~s~~~~~~~~~--~G~k~~VID~ss~fR~~~~~p~~vpevN~~~i~~~~~~-~i~~Ianp~C~tt~~~l~L~pL~  151 (377)
T 3uw3_A           75 CQGGDYTNDVFPKLRA--AGWNGYWIDAASSLRMKDDAVIILDPVNLNVIKDALVN-GTKNFIGGNCTVSLMLMALGGLF  151 (377)
T ss_dssp             CSCHHHHHHHHHHHHH--TTCCSEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHT-TCCEEEECCHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHH--CCCCEEEEeCCcccccCCCCceECCcCCHHHHhhhhhc-CCcEEEcCCHHHHHHHHHHHHHH
Confidence            9999998999999999  775 47787775421        1122 1222333123 54445566665566677778888


Q ss_pred             HcCCCCceEEEE
Q 017143          151 KSGSIGQVKMVA  162 (376)
Q Consensus       151 ~~g~iG~i~~~~  162 (376)
                      +.+.|-++....
T Consensus       152 ~~~~I~~i~v~t  163 (377)
T 3uw3_A          152 RENLVDWMTAMT  163 (377)
T ss_dssp             HTTCEEEEEEEE
T ss_pred             HhCCCCEEEEee
Confidence            876665543333

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=96.58  E-value=0.004  Score=55.27  Aligned_cols=74  Identities=23%  Similarity=0.198  Sum_probs=52.9

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc-----CCCCCc--cCCHHHHhhCCCCCEE
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF-----DWPLKV--FPGHQELLDSGLCDVV   78 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~-----~~~~~~--~~~~~~~l~~~~~D~V   78 (376)
                      .-++.|+|+|.+|+..+..|...   +++-+.|++|+.++   ++++++++     ++.+..  ++++++.+.+  .|+|
T Consensus       127 ~k~vlVlGaGG~g~aia~~L~~~---G~~~v~i~~R~~~~---a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~--~DiV  198 (283)
T 3jyo_A          127 LDSVVQVGAGGVGNAVAYALVTH---GVQKLQVADLDTSR---AQALADVINNAVGREAVVGVDARGIEDVIAA--ADGV  198 (283)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT---TCSEEEEECSSHHH---HHHHHHHHHHHHTSCCEEEECSTTHHHHHHH--SSEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC---CCCEEEEEECCHHH---HHHHHHHHHhhcCCceEEEcCHHHHHHHHhc--CCEE
Confidence            35899999999999988888886   67445588999884   44554433     222223  3478888876  8999


Q ss_pred             EEeCCCCcc
Q 017143           79 VVSTPNMTH   87 (376)
Q Consensus        79 ~i~t~~~~h   87 (376)
                      +-+||-..+
T Consensus       199 InaTp~Gm~  207 (283)
T 3jyo_A          199 VNATPMGMP  207 (283)
T ss_dssp             EECSSTTST
T ss_pred             EECCCCCCC
Confidence            999996554

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=96.56  E-value=0.0067  Score=55.73  Aligned_cols=100  Identities=10%  Similarity=0.111  Sum_probs=66.7

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      -.+|+|+|+|.+|...+..+...   +.+|+ ++|++++   ++++++++++..  . -+.++++.. +.|+++.|....
T Consensus       173 GktV~V~G~G~VG~~~A~~L~~~---GakVv-v~D~~~~---~l~~~a~~~ga~--~-v~~~~ll~~-~~DIvip~a~~~  241 (364)
T 1leh_A          173 GLAVSVQGLGNVAKALCKKLNTE---GAKLV-VTDVNKA---AVSAAVAEEGAD--A-VAPNAIYGV-TCDIFAPCALGA  241 (364)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT---TCEEE-EECSCHH---HHHHHHHHHCCE--E-CCGGGTTTC-CCSEEEECSCSC
T ss_pred             cCEEEEECchHHHHHHHHHHHHC---CCEEE-EEcCCHH---HHHHHHHHcCCE--E-EChHHHhcc-CCcEeeccchHH
Confidence            46899999999999988888776   78988 9999987   566777777743  3 355677663 489998876543


Q ss_pred             -ccHHHHHHHHcCCCCCeEEEecCCCCC-HHHHHHHHH
Q 017143           86 -THYQILMDIINHPKPHHVLVEKPLCTT-VADCKKVVD  121 (376)
Q Consensus        86 -~h~~~~~~al~~~~g~~Vl~EKP~a~~-~~e~~~l~~  121 (376)
                       ...+. .+.+.    ..+++|.--... .+++.++.+
T Consensus       242 ~I~~~~-~~~lg----~~iV~e~An~p~t~~ea~~~L~  274 (364)
T 1leh_A          242 VLNDFT-IPQLK----AKVIAGSADNQLKDPRHGKYLH  274 (364)
T ss_dssp             CBSTTH-HHHCC----CSEECCSCSCCBSSHHHHHHHH
T ss_pred             HhCHHH-HHhCC----CcEEEeCCCCCcccHHHHHHHH
Confidence             22232 23333    457888654332 235555443

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=96.55  E-value=0.0043  Score=60.25  Aligned_cols=100  Identities=19%  Similarity=0.328  Sum_probs=64.5

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ..+|||||+|.+|......++..   +.+|+ ++|++... +.    +.+.|+.  .. +++++++.  .|+|++++|..
T Consensus       142 g~~vgIIG~G~IG~~vA~~l~~~---G~~V~-~~d~~~~~-~~----a~~~g~~--~~-~l~e~~~~--aDvV~l~~P~~  207 (529)
T 1ygy_A          142 GKTVGVVGLGRIGQLVAQRIAAF---GAYVV-AYDPYVSP-AR----AAQLGIE--LL-SLDDLLAR--ADFISVHLPKT  207 (529)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTT---TCEEE-EECTTSCH-HH----HHHHTCE--EC-CHHHHHHH--CSEEEECCCCS
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhC---CCEEE-EECCCCCh-hH----HHhcCcE--Ec-CHHHHHhc--CCEEEECCCCc
Confidence            46899999999999998888775   77876 57887642 22    3345754  33 79999987  89999999976


Q ss_pred             -ccHHHH----HHHHcCCCCCeEEEecCCCCCHHHHHHHHHHH
Q 017143           86 -THYQIL----MDIINHPKPHHVLVEKPLCTTVADCKKVVDAA  123 (376)
Q Consensus        86 -~h~~~~----~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a  123 (376)
                       .-..++    ...++  .| .+++.-- .-.+-+..+|.++.
T Consensus       208 ~~t~~~i~~~~~~~~k--~g-~ilin~a-rg~iv~~~aL~~al  246 (529)
T 1ygy_A          208 PETAGLIDKEALAKTK--PG-VIIVNAA-RGGLVDEAALADAI  246 (529)
T ss_dssp             TTTTTCBCHHHHTTSC--TT-EEEEECS-CTTSBCHHHHHHHH
T ss_pred             hHHHHHhCHHHHhCCC--CC-CEEEECC-CCchhhHHHHHHHH
Confidence             222222    22344  33 4555433 22333344555555

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=96.51  E-value=0.0067  Score=54.98  Aligned_cols=80  Identities=21%  Similarity=0.267  Sum_probs=50.3

Q ss_pred             CCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHH-HHHHHHh--cCCCCCccCCHHHHhhCCCCCEEE
Q 017143            3 ANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQ-ALKLANA--FDWPLKVFPGHQELLDSGLCDVVV   79 (376)
Q Consensus         3 ~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~l~~~~~D~V~   79 (376)
                      .++++||+|||+|.+|...+..+...  +-+.-+.++|+++++++. +.++...  +..+++.+.+-.+.+++  .|+|+
T Consensus         6 ~~~~~KI~IiGaG~vG~~la~~l~~~--~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~--aDvVi   81 (326)
T 2zqz_A            6 DKDHQKVILVGDGAVGSSYAYAMVLQ--GIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKD--ADLVV   81 (326)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGG--CSEEE
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHcC--CCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCC--CCEEE
Confidence            45679999999999999877777665  444446688998875432 3333322  22222233333444655  89999


Q ss_pred             EeCCCCc
Q 017143           80 VSTPNMT   86 (376)
Q Consensus        80 i~t~~~~   86 (376)
                      ++.+...
T Consensus        82 i~ag~~~   88 (326)
T 2zqz_A           82 ITAGAPQ   88 (326)
T ss_dssp             ECCCCC-
T ss_pred             EcCCCCC
Confidence            9987543

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=96.51  E-value=0.03  Score=52.99  Aligned_cols=103  Identities=18%  Similarity=0.231  Sum_probs=60.9

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHH-----HHHHHHhcCCC----------CCccCCHHHHh
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQ-----ALKLANAFDWP----------LKVFPGHQELL   70 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-----~~~~~~~~~~~----------~~~~~~~~~~l   70 (376)
                      ..||+|||+|.||......+++.   +++|+ ++|+++++...     .+++.++-.++          +...+|++ .+
T Consensus        54 i~kVaVIGaG~MG~~IA~~la~a---G~~V~-l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al  128 (460)
T 3k6j_A           54 VNSVAIIGGGTMGKAMAICFGLA---GIETF-LVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KL  128 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT---TCEEE-EECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC---CCeEE-EEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HH
Confidence            46899999999999988888774   88866 68999873210     11222221111          13467775 45


Q ss_pred             hCCCCCEEEEeCCCCccH--HHHHHHHcCCCCCeEEEecCCCCCHHH
Q 017143           71 DSGLCDVVVVSTPNMTHY--QILMDIINHPKPHHVLVEKPLCTTVAD  115 (376)
Q Consensus        71 ~~~~~D~V~i~t~~~~h~--~~~~~al~~~~g~~Vl~EKP~a~~~~e  115 (376)
                      ++  .|+|+.++|.....  .+..+..+......|++----+.++.+
T Consensus       129 ~~--aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~~  173 (460)
T 3k6j_A          129 SN--CDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNE  173 (460)
T ss_dssp             TT--CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHH
T ss_pred             cc--CCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHHH
Confidence            44  89999999987543  333332221112345554333455543

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=96.50  E-value=0.0038  Score=56.00  Aligned_cols=63  Identities=21%  Similarity=0.272  Sum_probs=49.5

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ..+|||||+|.||+.....++..   +.+++ ++|++++  +       . +.  ..+.+++++++.  .|+|++++|..
T Consensus       124 g~~vgIIG~G~IG~~~A~~l~~~---G~~V~-~~dr~~~--~-------~-~~--~~~~~l~ell~~--aDvV~l~~P~~  185 (303)
T 1qp8_A          124 GEKVAVLGLGEIGTRVGKILAAL---GAQVR-GFSRTPK--E-------G-PW--RFTNSLEEALRE--ARAAVCALPLN  185 (303)
T ss_dssp             TCEEEEESCSTHHHHHHHHHHHT---TCEEE-EECSSCC--C-------S-SS--CCBSCSHHHHTT--CSEEEECCCCS
T ss_pred             CCEEEEEccCHHHHHHHHHHHHC---CCEEE-EECCCcc--c-------c-Cc--ccCCCHHHHHhh--CCEEEEeCcCc
Confidence            46899999999999988888876   78876 5788764  1       1 32  256789999987  89999999976


Q ss_pred             c
Q 017143           86 T   86 (376)
Q Consensus        86 ~   86 (376)
                      .
T Consensus       186 ~  186 (303)
T 1qp8_A          186 K  186 (303)
T ss_dssp             T
T ss_pred             h
Confidence            4

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=96.49  E-value=0.0036  Score=56.36  Aligned_cols=62  Identities=27%  Similarity=0.417  Sum_probs=49.1

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ..+|||||+|.||+.....++..   +.+++ ++|+++++.   .       +   .+.+++++++.  .|+|++++|..
T Consensus       144 g~~vgIIG~G~IG~~~A~~l~~~---G~~V~-~~d~~~~~~---~-------~---~~~~l~ell~~--aDvV~l~~p~~  204 (311)
T 2cuk_A          144 GLTLGLVGMGRIGQAVAKRALAF---GMRVV-YHARTPKPL---P-------Y---PFLSLEELLKE--ADVVSLHTPLT  204 (311)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT---TCEEE-EECSSCCSS---S-------S---CBCCHHHHHHH--CSEEEECCCCC
T ss_pred             CCEEEEEEECHHHHHHHHHHHHC---CCEEE-EECCCCccc---c-------c---ccCCHHHHHhh--CCEEEEeCCCC
Confidence            46899999999999998888876   68876 588877631   1       2   35789999987  89999999976


Q ss_pred             c
Q 017143           86 T   86 (376)
Q Consensus        86 ~   86 (376)
                      .
T Consensus       205 ~  205 (311)
T 2cuk_A          205 P  205 (311)
T ss_dssp             T
T ss_pred             h
Confidence            3

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=96.48  E-value=0.0059  Score=56.09  Aligned_cols=142  Identities=11%  Similarity=0.087  Sum_probs=87.0

Q ss_pred             eeEEEEeC-ChhhHHHHH-HhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC---CHHHHhhCCCCCEEEEe
Q 017143            7 VKYGIIGM-GMMGREHFI-NLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP---GHQELLDSGLCDVVVVS   81 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~-~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~D~V~i~   81 (376)
                      +||||||+ |..|...++ .|.++.-+.++++.+.+++.-     +.+..-.|.. ..+.   +.++ ++  ++|+|+.|
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~aG-----~~~~~~~~~~-~~~~~~~~~~~-~~--~~Dvvf~a   71 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIG-----VPAPNFGKDA-GMLHDAFDIES-LK--QLDAVITC   71 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSSTT-----SBCCCSSSCC-CBCEETTCHHH-HT--TCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccccC-----cCHHHhCCCc-eEEEecCChhH-hc--cCCEEEEC
Confidence            68999995 889999998 777772237899888776521     1111001111 1222   3333 33  49999999


Q ss_pred             CCCCccHHHHHHHHcCCCCC-eEEEecCCCC--C------HHHHH-HHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHH
Q 017143           82 TPNMTHYQILMDIINHPKPH-HVLVEKPLCT--T------VADCK-KVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVK  151 (376)
Q Consensus        82 t~~~~h~~~~~~al~~~~g~-~Vl~EKP~a~--~------~~e~~-~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~  151 (376)
                      +|+..-.+.+.++++  +|. -+.+.-|.+.  +      +.|.. +-++.++++ ++.+..+.++.-.-....++-+.+
T Consensus        72 ~~~~~s~~~~~~~~~--~G~k~~VID~ss~fR~~~~~p~~vpevN~~~i~~~~~~-~i~~Ianp~C~tt~~~l~L~pL~~  148 (370)
T 3pzr_A           72 QGGSYTEKVYPALRQ--AGWKGYWIDAASTLRMDKEAIITLDPVNLKQILHGIHH-GTKTFVGGNCTVSLMLMALGGLYE  148 (370)
T ss_dssp             SCHHHHHHHHHHHHH--TTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHT-TCCEEEECCHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHH--CCCCEEEEeCCchhccCCCCcEEcccCCHHHHhhhhhc-CCcEEEcCChHHHHHHHHHHHHHH
Confidence            999988999999999  775 4777777542  1      12221 222333123 544455666555566677777888


Q ss_pred             cCCCCceEE
Q 017143          152 SGSIGQVKM  160 (376)
Q Consensus       152 ~g~iG~i~~  160 (376)
                      .+.|-++..
T Consensus       149 ~~~I~~i~v  157 (370)
T 3pzr_A          149 RGLVEWMSA  157 (370)
T ss_dssp             TTCEEEEEE
T ss_pred             hCCCcEEEE
Confidence            766655433

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=96.47  E-value=0.0053  Score=55.91  Aligned_cols=64  Identities=20%  Similarity=0.351  Sum_probs=49.2

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      -.+|||||+|.||+.....++..   +.+|+ ++|++++.     .  .+.++   .+.++++++++  .|+|++++|..
T Consensus       148 gktvgIiGlG~IG~~vA~~l~~~---G~~V~-~~d~~~~~-----~--~~~~~---~~~~l~ell~~--aDvV~l~~Plt  211 (343)
T 2yq5_A          148 NLTVGLIGVGHIGSAVAEIFSAM---GAKVI-AYDVAYNP-----E--FEPFL---TYTDFDTVLKE--ADIVSLHTPLF  211 (343)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHT---TCEEE-EECSSCCG-----G--GTTTC---EECCHHHHHHH--CSEEEECCCCC
T ss_pred             CCeEEEEecCHHHHHHHHHHhhC---CCEEE-EECCChhh-----h--hhccc---cccCHHHHHhc--CCEEEEcCCCC
Confidence            35899999999999998888876   88877 57887752     1  11122   34589999987  89999999954

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=96.46  E-value=0.0044  Score=57.09  Aligned_cols=63  Identities=27%  Similarity=0.422  Sum_probs=48.2

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      -.+|||||+|.||+.....++..   +.+|++ +|+..+   ..     ..+   ..+.++++++++  .|+|++++|..
T Consensus       119 gktvGIIGlG~IG~~vA~~l~a~---G~~V~~-~d~~~~---~~-----~~~---~~~~sl~ell~~--aDiV~l~~Plt  181 (381)
T 3oet_A          119 DRTIGIVGVGNVGSRLQTRLEAL---GIRTLL-CDPPRA---AR-----GDE---GDFRTLDELVQE--ADVLTFHTPLY  181 (381)
T ss_dssp             GCEEEEECCSHHHHHHHHHHHHT---TCEEEE-ECHHHH---HT-----TCC---SCBCCHHHHHHH--CSEEEECCCCC
T ss_pred             CCEEEEEeECHHHHHHHHHHHHC---CCEEEE-ECCChH---Hh-----ccC---cccCCHHHHHhh--CCEEEEcCcCC
Confidence            36899999999999998888876   888775 675332   11     112   357899999987  89999999954

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=96.46  E-value=0.0059  Score=56.61  Aligned_cols=71  Identities=15%  Similarity=0.159  Sum_probs=49.8

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC-C---ccCCHHHHhhCCCCCEEEEe
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL-K---VFPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~l~~~~~D~V~i~   81 (376)
                      .-+|+|||+|.+|...+..++..   +.+|+ ++|++++++   +.+.+.+|... .   .+.++++++..  .|+|+.+
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~---Ga~V~-~~d~~~~~l---~~~~~~~g~~~~~~~~~~~~l~~~l~~--aDvVi~~  238 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGM---GATVT-VLDINIDKL---RQLDAEFCGRIHTRYSSAYELEGAVKR--ADLVIGA  238 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT---TCEEE-EEESCHHHH---HHHHHHTTTSSEEEECCHHHHHHHHHH--CSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC---CCEEE-EEeCCHHHH---HHHHHhcCCeeEeccCCHHHHHHHHcC--CCEEEEC
Confidence            46899999999999988888776   66755 689988743   34444455431 0   13456677765  8999998


Q ss_pred             CCCC
Q 017143           82 TPNM   85 (376)
Q Consensus        82 t~~~   85 (376)
                      ++..
T Consensus       239 ~~~p  242 (377)
T 2vhw_A          239 VLVP  242 (377)
T ss_dssp             CCCT
T ss_pred             CCcC
Confidence            8643

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=96.45  E-value=0.019  Score=51.82  Aligned_cols=102  Identities=22%  Similarity=0.281  Sum_probs=66.9

Q ss_pred             CCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcC-----CC----------------CC
Q 017143            3 ANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFD-----WP----------------LK   61 (376)
Q Consensus         3 ~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~-----~~----------------~~   61 (376)
                      ...++||||.|.|+||+..++++...  + +++++|.|+..+. +...-+- +|+     ++                +.
T Consensus         4 ~~~~~kvgInGFGRIGrlv~R~~~~~--~-veivainDp~~d~-~~~a~l~-~yDS~hG~f~~~v~~~~~~l~i~Gk~I~   78 (346)
T 3h9e_O            4 VARELTVGINGFGRIGRLVLRACMEK--G-VKVVAVNDPFIDP-EYMVYMF-KYDSTHGRYKGSVEFRNGQLVVDNHEIS   78 (346)
T ss_dssp             --CCCEEEEECCSHHHHHHHHHHHHT--T-CEEEEEECTTCCH-HHHHHHH-HCCTTTCSCSSCEEEETTEEEETTEEEE
T ss_pred             cCCeeEEEEECCChHHHHHHHHHHhC--C-CEEEEEeCCCCCh-hHhcccc-cccCCCCCCCCcEEEcCCEEEECCEEEE
Confidence            34579999999999999888877665  3 9999999963221 1222222 221     00                11


Q ss_pred             cc--CCHHHHhh-CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCC
Q 017143           62 VF--PGHQELLD-SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLC  110 (376)
Q Consensus        62 ~~--~~~~~~l~-~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a  110 (376)
                      ++  .+.+++-. +..+|+|+-||.-....+.+..++++| -|-|++.-|.+
T Consensus        79 v~~e~dp~~i~W~~~gvDiVlesTG~f~s~e~a~~hl~aG-AkkVVIsaps~  129 (346)
T 3h9e_O           79 VYQCKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAG-AQRVVISAPSP  129 (346)
T ss_dssp             EECCSSGGGCCGGGGTSCEEEECSSSCCSHHHHHHHHHTT-CSEEEESSCCS
T ss_pred             EEecCChhhCCcccccccEEEEeccccCCHHHHHHHHHcC-CCEEEECCCCC
Confidence            11  12232221 126999999999999999999999955 26688888854

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=96.45  E-value=0.0031  Score=56.73  Aligned_cols=75  Identities=20%  Similarity=0.208  Sum_probs=46.9

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCc--------cCCHHHHhhCCCCCE
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKV--------FPGHQELLDSGLCDV   77 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~D~   77 (376)
                      ++||+|||+|.+|......|. .   +.+|+ ++++++++   ++++.+ .|+.+..        +...++..  ...|+
T Consensus         2 ~mkI~IiGaGa~G~~~a~~L~-~---g~~V~-~~~r~~~~---~~~l~~-~G~~~~~~~~~~~~~~~~~~~~~--~~~D~   70 (307)
T 3ego_A            2 SLKIGIIGGGSVGLLCAYYLS-L---YHDVT-VVTRRQEQ---AAAIQS-EGIRLYKGGEEFRADCSADTSIN--SDFDL   70 (307)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-T---TSEEE-EECSCHHH---HHHHHH-HCEEEEETTEEEEECCEEESSCC--SCCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHh-c---CCceE-EEECCHHH---HHHHHh-CCceEecCCCeeccccccccccc--CCCCE
Confidence            479999999999998877777 4   46765 67888763   444433 2432110        00001222  34899


Q ss_pred             EEEeCCCCccHHHH
Q 017143           78 VVVSTPNMTHYQIL   91 (376)
Q Consensus        78 V~i~t~~~~h~~~~   91 (376)
                      |++++++..-.+.+
T Consensus        71 vilavK~~~~~~~l   84 (307)
T 3ego_A           71 LVVTVKQHQLQSVF   84 (307)
T ss_dssp             EEECCCGGGHHHHH
T ss_pred             EEEEeCHHHHHHHH
Confidence            99999987654444

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=96.44  E-value=0.0094  Score=53.12  Aligned_cols=73  Identities=21%  Similarity=0.255  Sum_probs=48.1

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHH-HHHHHHH---hcCCC--CCccCCHHHHhhCCCCCEEEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQ-QALKLAN---AFDWP--LKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~~---~~~~~--~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      |||+|||+|.+|...+..+...  +.+.-+.++|+++++++ .+.++..   .++.+  +..+++ .+.+++  .|+|++
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~--~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~--aDiVVi   75 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLN--LDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKG--SEIIVV   75 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH--SCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTT--CSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCC--CCEEEE
Confidence            5899999999999888777776  34433558999998543 1222221   23333  233456 566665  899999


Q ss_pred             eCCC
Q 017143           81 STPN   84 (376)
Q Consensus        81 ~t~~   84 (376)
                      +.+.
T Consensus        76 aag~   79 (294)
T 1oju_A           76 TAGL   79 (294)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9764

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=96.42  E-value=0.002  Score=57.11  Aligned_cols=119  Identities=15%  Similarity=0.159  Sum_probs=76.6

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      .-++.|+|+|..|+..+..|...   +++-+.|++|+.+   ++++++++++.  ..|+++++ +   +.|+||-+||-.
T Consensus       122 ~k~vlvlGaGGaaraia~~L~~~---G~~~v~v~nRt~~---ka~~La~~~~~--~~~~~l~~-l---~~DivInaTp~G  189 (282)
T 3fbt_A          122 NNICVVLGSGGAARAVLQYLKDN---FAKDIYVVTRNPE---KTSEIYGEFKV--ISYDELSN-L---KGDVIINCTPKG  189 (282)
T ss_dssp             TSEEEEECSSTTHHHHHHHHHHT---TCSEEEEEESCHH---HHHHHCTTSEE--EEHHHHTT-C---CCSEEEECSSTT
T ss_pred             CCEEEEECCcHHHHHHHHHHHHc---CCCEEEEEeCCHH---HHHHHHHhcCc--ccHHHHHh-c---cCCEEEECCccC
Confidence            35899999999999988888876   6744558899887   67788776541  23333333 2   589999999975


Q ss_pred             ccH-----HHHHHHHcCCCCCeEEEe---cCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHH
Q 017143           86 THY-----QILMDIINHPKPHHVLVE---KPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKL  146 (376)
Q Consensus        86 ~h~-----~~~~~al~~~~g~~Vl~E---KP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~  146 (376)
                      .+.     .+-...++  .+ .+.++   +|.     +. .|.+.|+++ |..+.-|....-..+....
T Consensus       190 m~~~~~~~pi~~~~l~--~~-~~v~DlvY~P~-----~T-~ll~~A~~~-G~~~~~Gl~MLv~Qa~~~f  248 (282)
T 3fbt_A          190 MYPKEGESPVDKEVVA--KF-SSAVDLIYNPV-----ET-LFLKYARES-GVKAVNGLYMLVSQAAASE  248 (282)
T ss_dssp             STTSTTCCSSCHHHHT--TC-SEEEESCCSSS-----SC-HHHHHHHHT-TCEEECSHHHHHHHHHHHH
T ss_pred             ccCCCccCCCCHHHcC--CC-CEEEEEeeCCC-----CC-HHHHHHHHC-cCeEeCcHHHHHHHHHHHH
Confidence            542     23445566  44 45455   443     22 256666455 7787777665554443333

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=96.40  E-value=0.015  Score=52.51  Aligned_cols=74  Identities=16%  Similarity=0.266  Sum_probs=45.2

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCc--EEEEEeCCChhhHH-HHHHHHHhc----CCCCCccCCHHHHhhCCCCCE
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGV--SVVCIADPHLQSRQ-QALKLANAF----DWPLKVFPGHQELLDSGLCDV   77 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~--~~~~v~d~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~l~~~~~D~   77 (376)
                      +++||+|||+|.+|......+...   +.  +|+ ++|+++++.+ .+.++....    ...+...++++ .+.  +.|+
T Consensus         6 ~~mkI~IiGaG~vG~~~a~~l~~~---g~~~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~--~aD~   78 (319)
T 1lld_A            6 KPTKLAVIGAGAVGSTLAFAAAQR---GIAREIV-LEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPE-ICR--DADM   78 (319)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHT---TCCSEEE-EECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGG-GGT--TCSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC---CCCCEEE-EEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHH-HhC--CCCE
Confidence            458999999999999888777664   44  654 7899876443 122222211    11111223553 444  4899


Q ss_pred             EEEeCCCC
Q 017143           78 VVVSTPNM   85 (376)
Q Consensus        78 V~i~t~~~   85 (376)
                      |++++...
T Consensus        79 Vii~v~~~   86 (319)
T 1lld_A           79 VVITAGPR   86 (319)
T ss_dssp             EEECCCCC
T ss_pred             EEECCCCC
Confidence            99999644

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=96.37  E-value=0.0011  Score=60.85  Aligned_cols=143  Identities=10%  Similarity=0.036  Sum_probs=83.2

Q ss_pred             ceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHH-HHhhCCCCCEEEEeCC
Q 017143            6 TVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQ-ELLDSGLCDVVVVSTP   83 (376)
Q Consensus         6 ~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~D~V~i~t~   83 (376)
                      ++||+||| +|..|...++.|.+..-|.++++.+.+++..    .+.+. ..+.+ ..+.+.+ +.++  ++|+|+.|+|
T Consensus         2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~sa----G~~~~-~~~~~-~~~~~~~~~~~~--~~Dvvf~a~~   73 (366)
T 3pwk_A            2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSA----GKSLK-FKDQD-ITIEETTETAFE--GVDIALFSAG   73 (366)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTT----TCEEE-ETTEE-EEEEECCTTTTT--TCSEEEECSC
T ss_pred             CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccC----CCcce-ecCCC-ceEeeCCHHHhc--CCCEEEECCC
Confidence            58999999 6999999988777642267888888765432    11111 00111 1111111 1233  5999999999


Q ss_pred             CCccHHHHHHHHcCCCCCeEEEecCCCC--------CHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCC
Q 017143           84 NMTHYQILMDIINHPKPHHVLVEKPLCT--------TVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSI  155 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~EKP~a~--------~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~i  155 (376)
                      .....+.+.++++  +|.-|+- -+.+.        =+.|..   ...-+. ...+..+-++.-......++-+.+.+.|
T Consensus        74 ~~~s~~~a~~~~~--~G~~vID-lSa~~R~~~~~p~~vpevN---~~~i~~-~~~iIanpgC~tt~~~l~l~pL~~~~~i  146 (366)
T 3pwk_A           74 SSTSAKYAPYAVK--AGVVVVD-NTSYFRQNPDVPLVVPEVN---AHALDA-HNGIIACPNCSTIQMMVALEPVRQKWGL  146 (366)
T ss_dssp             HHHHHHHHHHHHH--TTCEEEE-CSSTTTTCTTSCBCCHHHH---GGGGTT-CCSEEECCCHHHHHHHHHHHHHHHHHCC
T ss_pred             hHhHHHHHHHHHH--CCCEEEE-cCCccccCCCceEEEccCC---HHHHcC-CCCeEECCCcHHHHHHHHHHHHHHhCCC
Confidence            9999999999999  7765443 22211        122222   211121 1234455555556666777778777667


Q ss_pred             CceEEEEE
Q 017143          156 GQVKMVAI  163 (376)
Q Consensus       156 G~i~~~~~  163 (376)
                      .++.....
T Consensus       147 ~~i~v~t~  154 (366)
T 3pwk_A          147 DRIIVSTY  154 (366)
T ss_dssp             SEEEEEEE
T ss_pred             cEEEEEEE
Confidence            66544433

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=96.37  E-value=0.012  Score=56.28  Aligned_cols=67  Identities=21%  Similarity=0.193  Sum_probs=50.2

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      -.+|+|||+|.+|...+..++..   +.+|+ ++|+++.+.+    .+.+.|+.   +.++++++..  .|+|+.++++.
T Consensus       274 GktV~IiG~G~IG~~~A~~lka~---Ga~Vi-v~d~~~~~~~----~A~~~Ga~---~~~l~e~l~~--aDvVi~atgt~  340 (494)
T 3ce6_A          274 GKKVLICGYGDVGKGCAEAMKGQ---GARVS-VTEIDPINAL----QAMMEGFD---VVTVEEAIGD--ADIVVTATGNK  340 (494)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT---TCEEE-EECSCHHHHH----HHHHTTCE---ECCHHHHGGG--CSEEEECSSSS
T ss_pred             cCEEEEEccCHHHHHHHHHHHHC---CCEEE-EEeCCHHHHH----HHHHcCCE---EecHHHHHhC--CCEEEECCCCH
Confidence            36899999999999988888776   67755 6899887433    23456753   3568888865  89999998643

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=96.37  E-value=0.0022  Score=58.05  Aligned_cols=66  Identities=17%  Similarity=0.254  Sum_probs=49.4

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-CCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      -.+|||||+|.||+.....++..   +.+|++ +|++++..   +.      +. ...+.++++++++  .|+|++++|.
T Consensus       137 gktvGIiGlG~IG~~vA~~l~~~---G~~V~~-~dr~~~~~---~~------~~~~~~~~~l~ell~~--aDvV~l~lPl  201 (324)
T 3evt_A          137 GQQLLIYGTGQIGQSLAAKASAL---GMHVIG-VNTTGHPA---DH------FHETVAFTATADALAT--ANFIVNALPL  201 (324)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT---TCEEEE-EESSCCCC---TT------CSEEEEGGGCHHHHHH--CSEEEECCCC
T ss_pred             CCeEEEECcCHHHHHHHHHHHhC---CCEEEE-ECCCcchh---Hh------HhhccccCCHHHHHhh--CCEEEEcCCC
Confidence            36899999999999998888876   889875 67776521   11      11 1234688999987  8999999996


Q ss_pred             Cc
Q 017143           85 MT   86 (376)
Q Consensus        85 ~~   86 (376)
                      ..
T Consensus       202 t~  203 (324)
T 3evt_A          202 TP  203 (324)
T ss_dssp             CG
T ss_pred             ch
Confidence            43

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=96.35  E-value=0.0045  Score=54.56  Aligned_cols=74  Identities=24%  Similarity=0.316  Sum_probs=52.3

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCC-CCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDW-PLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      .-++.|+|+|.+|+..+..|.+.   ++.-+.|++|+.+   ++++++++++- .+.. .+++++-. .+.|+|+-+||.
T Consensus       120 ~k~~lvlGaGg~~~aia~~L~~~---G~~~v~i~~R~~~---~a~~la~~~~~~~~~~-~~~~~l~~-~~~DivInaTp~  191 (272)
T 3pwz_A          120 NRRVLLLGAGGAVRGALLPFLQA---GPSELVIANRDMA---KALALRNELDHSRLRI-SRYEALEG-QSFDIVVNATSA  191 (272)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHT---CCSEEEEECSCHH---HHHHHHHHHCCTTEEE-ECSGGGTT-CCCSEEEECSSG
T ss_pred             CCEEEEECccHHHHHHHHHHHHc---CCCEEEEEeCCHH---HHHHHHHHhccCCeeE-eeHHHhcc-cCCCEEEECCCC
Confidence            35899999999999988888875   6644568899987   67777777652 1111 23444432 459999999997


Q ss_pred             Ccc
Q 017143           85 MTH   87 (376)
Q Consensus        85 ~~h   87 (376)
                      ..+
T Consensus       192 gm~  194 (272)
T 3pwz_A          192 SLT  194 (272)
T ss_dssp             GGG
T ss_pred             CCC
Confidence            654

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=96.35  E-value=0.016  Score=52.93  Aligned_cols=92  Identities=14%  Similarity=0.086  Sum_probs=61.1

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-CCcc--CCH-HHHhh---CCCCCEEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LKVF--PGH-QELLD---SGLCDVVV   79 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~~~~--~~~-~~~l~---~~~~D~V~   79 (376)
                      =+|.|+|+|.+|...+..++..  .+.+++++ +++++++    ++++++|.+ +-.|  .++ +++.+   ...+|.++
T Consensus       165 ~~VlV~GaG~~g~~a~~~a~~~--~g~~Vi~~-~~~~~r~----~~~~~~Ga~~~i~~~~~~~~~~v~~~t~g~g~d~~~  237 (348)
T 4eez_A          165 DWQVIFGAGGLGNLAIQYAKNV--FGAKVIAV-DINQDKL----NLAKKIGADVTINSGDVNPVDEIKKITGGLGVQSAI  237 (348)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--SCCEEEEE-ESCHHHH----HHHHHTTCSEEEEC-CCCHHHHHHHHTTSSCEEEEE
T ss_pred             CEEEEEcCCCccHHHHHHHHHh--CCCEEEEE-ECcHHHh----hhhhhcCCeEEEeCCCCCHHHHhhhhcCCCCceEEE
Confidence            4799999999998888777776  67888865 5666643    345556654 1112  233 33332   23578999


Q ss_pred             EeCCCCccHHHHHHHHcCCCCCeEEEe
Q 017143           80 VSTPNMTHYQILMDIINHPKPHHVLVE  106 (376)
Q Consensus        80 i~t~~~~h~~~~~~al~~~~g~~Vl~E  106 (376)
                      .++........+..+++.+ |+-+++-
T Consensus       238 ~~~~~~~~~~~~~~~l~~~-G~~v~~g  263 (348)
T 4eez_A          238 VCAVARIAFEQAVASLKPM-GKMVAVA  263 (348)
T ss_dssp             ECCSCHHHHHHHHHTEEEE-EEEEECC
T ss_pred             EeccCcchhheeheeecCC-ceEEEEe
Confidence            9998888788888888743 6655553

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=96.35  E-value=0.0065  Score=56.06  Aligned_cols=64  Identities=31%  Similarity=0.458  Sum_probs=49.0

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ..+|||||+|.+|+.....++..   +.+++ ++|++++   ..     ..+.   .+.++++++++  .|+|++++|..
T Consensus       116 g~tvGIIGlG~IG~~vA~~l~~~---G~~V~-~~d~~~~---~~-----~~g~---~~~~l~ell~~--aDvV~l~~Plt  178 (380)
T 2o4c_A          116 ERTYGVVGAGQVGGRLVEVLRGL---GWKVL-VCDPPRQ---AR-----EPDG---EFVSLERLLAE--ADVISLHTPLN  178 (380)
T ss_dssp             GCEEEEECCSHHHHHHHHHHHHT---TCEEE-EECHHHH---HH-----STTS---CCCCHHHHHHH--CSEEEECCCCC
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHC---CCEEE-EEcCChh---hh-----ccCc---ccCCHHHHHHh--CCEEEEeccCc
Confidence            46899999999999998888876   78876 4776443   11     2232   46789999987  89999999975


Q ss_pred             c
Q 017143           86 T   86 (376)
Q Consensus        86 ~   86 (376)
                      .
T Consensus       179 ~  179 (380)
T 2o4c_A          179 R  179 (380)
T ss_dssp             S
T ss_pred             c
Confidence            4

>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}

Probab=96.33  E-value=0.011  Score=53.12  Aligned_cols=80  Identities=14%  Similarity=0.178  Sum_probs=53.7

Q ss_pred             CCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH--------HHHHHHHHhcCCCCC---ccCC--HHHH
Q 017143            3 ANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSR--------QQALKLANAFDWPLK---VFPG--HQEL   69 (376)
Q Consensus         3 ~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~--------~~~~~~~~~~~~~~~---~~~~--~~~~   69 (376)
                      ||+++||.++|+..++...+..|.+.   +.++++|+..-+.+.        ...+++|+++|+|+.   .+.+  +.+.
T Consensus         4 m~~~mrivf~Gt~~fa~~~L~~L~~~---~~~v~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~   80 (318)
T 3q0i_A            4 MSQSLRIVFAGTPDFAARHLAALLSS---EHEIIAVYTQPERPAGRGKKLTASPVKTLALEHNVPVYQPENFKSDESKQQ   80 (318)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHTS---SSEEEEEECCCC---------CCCHHHHHHHHTTCCEECCSCSCSHHHHHH
T ss_pred             cccCCEEEEEecCHHHHHHHHHHHHC---CCcEEEEEcCCCCcccccccCCCCHHHHHHHHcCCCEEccCcCCCHHHHHH
Confidence            35679999999998888777777664   789999997522211        134688999999821   1222  3456


Q ss_pred             hhCCCCCEEEEeCCCC
Q 017143           70 LDSGLCDVVVVSTPNM   85 (376)
Q Consensus        70 l~~~~~D~V~i~t~~~   85 (376)
                      |+..++|+++++.-..
T Consensus        81 l~~~~~Dliv~~~y~~   96 (318)
T 3q0i_A           81 LAALNADLMVVVAYGL   96 (318)
T ss_dssp             HHTTCCSEEEESSCCS
T ss_pred             HHhcCCCEEEEeCccc
Confidence            6677899999887643

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=96.33  E-value=0.0091  Score=53.73  Aligned_cols=74  Identities=15%  Similarity=0.140  Sum_probs=48.0

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHH-HHHHh---cCCC--CCccCCHHHHhhCCCCCEEEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQAL-KLANA---FDWP--LKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~---~~~~--~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      +||+|||+|.+|......++.. +.+.+|+ ++|+++++.+... .+...   +..+  +..++++++ +++  .|+|++
T Consensus         1 mkI~VIGaG~vG~~la~~la~~-~~g~~V~-l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~--aDvVii   75 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEK-QLARELV-LLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TAN--SDIVII   75 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCCSEEE-EECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTT--CSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCCEEE-EEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCC--CCEEEE
Confidence            4899999999999877777664 1255655 7899987544221 12111   1222  234578877 655  899999


Q ss_pred             eCCCC
Q 017143           81 STPNM   85 (376)
Q Consensus        81 ~t~~~   85 (376)
                      ++|..
T Consensus        76 av~~p   80 (310)
T 1guz_A           76 TAGLP   80 (310)
T ss_dssp             CCSCC
T ss_pred             eCCCC
Confidence            99753

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=96.31  E-value=0.021  Score=52.04  Aligned_cols=134  Identities=16%  Similarity=0.175  Sum_probs=80.8

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc----CCHHHHhh----CCCCCEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF----PGHQELLD----SGLCDVV   78 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~----~~~~D~V   78 (376)
                      -+|.|+|+|.+|...+..++..   +...+.++++++++++    +++++|.+ .++    .+..+...    ...+|+|
T Consensus       162 ~~VlV~GaG~vG~~aiq~ak~~---G~~~vi~~~~~~~k~~----~a~~lGa~-~~i~~~~~~~~~~~~~~~~~~g~d~v  233 (346)
T 4a2c_A          162 KNVIIIGAGTIGLLAIQCAVAL---GAKSVTAIDISSEKLA----LAKSFGAM-QTFNSSEMSAPQMQSVLRELRFNQLI  233 (346)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT---TCSEEEEEESCHHHHH----HHHHTTCS-EEEETTTSCHHHHHHHHGGGCSSEEE
T ss_pred             CEEEEECCCCcchHHHHHHHHc---CCcEEEEEechHHHHH----HHHHcCCe-EEEeCCCCCHHHHHHhhcccCCcccc
Confidence            4789999999998877766665   6666667788887443    45566755 222    23333332    2457999


Q ss_pred             EEeCCCCccHHHHHHHHcCCCCCeEEEecCC---CCCHHHHHHHHHHHHhCCCeEEEEeecccc-----CHHHHHHHHHH
Q 017143           79 VVSTPNMTHYQILMDIINHPKPHHVLVEKPL---CTTVADCKKVVDAARKRPDILVQVGLEYRY-----MPPVAKLIQIV  150 (376)
Q Consensus        79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~---a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~-----~p~~~~~k~~i  150 (376)
                      +.++......+.+.++++.+ |+-+++--+.   .........+   . .+ ++.+. |....+     ...+..+.+++
T Consensus       234 ~d~~G~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~---~-~k-~~~i~-G~~~~~~~~~~~~~~~~~~~l~  306 (346)
T 4a2c_A          234 LETAGVPQTVELAVEIAGPH-AQLALVGTLHQDLHLTSATFGKI---L-RK-ELTVI-GSWMNYSSPWPGQEWETASRLL  306 (346)
T ss_dssp             EECSCSHHHHHHHHHHCCTT-CEEEECCCCSSCEEECHHHHHHH---H-HH-TCEEE-ECCTTCCSSTTCHHHHHHHHHH
T ss_pred             cccccccchhhhhhheecCC-eEEEEEeccCCCccccccCHHHH---h-hc-eeEEE-EEeccccCcchHHHHHHHHHHH
Confidence            99998888888899999832 4444443222   2233333332   3 22 33332 222221     24577788888


Q ss_pred             HcCCC
Q 017143          151 KSGSI  155 (376)
Q Consensus       151 ~~g~i  155 (376)
                      ++|++
T Consensus       307 ~~g~l  311 (346)
T 4a2c_A          307 TERKL  311 (346)
T ss_dssp             HTTCS
T ss_pred             HcCCC
Confidence            88876

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=96.31  E-value=0.01  Score=53.86  Aligned_cols=93  Identities=16%  Similarity=0.071  Sum_probs=58.8

Q ss_pred             CceeEEEEeCChhhHH-HHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143            5 DTVKYGIIGMGMMGRE-HFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~-~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      .+.||.|||.|.+|.. ....+.+   .+.+|. ++|..+... ..+++. +.|+++..-.+.+++.+ .++|+|+++.-
T Consensus         3 ~~~~i~~iGiGg~Gms~~A~~L~~---~G~~V~-~~D~~~~~~-~~~~L~-~~gi~v~~g~~~~~l~~-~~~d~vV~Spg   75 (326)
T 3eag_A            3 AMKHIHIIGIGGTFMGGLAAIAKE---AGFEVS-GCDAKMYPP-MSTQLE-ALGIDVYEGFDAAQLDE-FKADVYVIGNV   75 (326)
T ss_dssp             CCCEEEEESCCSHHHHHHHHHHHH---TTCEEE-EEESSCCTT-HHHHHH-HTTCEEEESCCGGGGGS-CCCSEEEECTT
T ss_pred             CCcEEEEEEECHHHHHHHHHHHHh---CCCEEE-EEcCCCCcH-HHHHHH-hCCCEEECCCCHHHcCC-CCCCEEEECCC
Confidence            3568999999999986 4444445   488876 578764311 223333 45776211134444431 23898888765


Q ss_pred             CCccHHHHHHHHcCCCCCeEEEe
Q 017143           84 NMTHYQILMDIINHPKPHHVLVE  106 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~E  106 (376)
                      -....+.+.+|.+  +|++|+-|
T Consensus        76 i~~~~p~~~~a~~--~gi~v~~~   96 (326)
T 3eag_A           76 AKRGMDVVEAILN--LGLPYISG   96 (326)
T ss_dssp             CCTTCHHHHHHHH--TTCCEEEH
T ss_pred             cCCCCHHHHHHHH--cCCcEEeH
Confidence            5555566778889  89999987

>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*

Probab=96.31  E-value=0.019  Score=48.45  Aligned_cols=88  Identities=13%  Similarity=0.020  Sum_probs=53.8

Q ss_pred             CCceeEEEE--eCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC-----C-------HHHH
Q 017143            4 NDTVKYGII--GMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP-----G-------HQEL   69 (376)
Q Consensus         4 ~~~~~v~ii--G~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~-----~-------~~~~   69 (376)
                      ++++||+|.  |.|......+.++...  -.+++++|++..+.   ...+.|+++|+|+...+     +       +.+.
T Consensus        10 ~~~~ri~vl~SG~gsnl~all~~~~~~--~~~eI~~Vis~~~a---~~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~   84 (215)
T 3da8_A           10 SAPARLVVLASGTGSLLRSLLDAAVGD--YPARVVAVGVDREC---RAAEIAAEASVPVFTVRLADHPSRDAWDVAITAA   84 (215)
T ss_dssp             CSSEEEEEEESSCCHHHHHHHHHSSTT--CSEEEEEEEESSCC---HHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHH
T ss_pred             CCCcEEEEEEeCChHHHHHHHHHHhcc--CCCeEEEEEeCCch---HHHHHHHHcCCCEEEeCcccccchhhhhHHHHHH
Confidence            457899999  6665545555544331  35788888765443   56778999999832221     1       2345


Q ss_pred             hhCCCCCEEEEeCCCCccHHHHHHHHc
Q 017143           70 LDSGLCDVVVVSTPNMTHYQILMDIIN   96 (376)
Q Consensus        70 l~~~~~D~V~i~t~~~~h~~~~~~al~   96 (376)
                      |+..++|+++++.-...=.+-++...+
T Consensus        85 l~~~~~Dlivlagy~~iL~~~~l~~~~  111 (215)
T 3da8_A           85 TAAHEPDLVVSAGFMRILGPQFLSRFY  111 (215)
T ss_dssp             HHTTCCSEEEEEECCSCCCHHHHHHHT
T ss_pred             HHhhCCCEEEEcCchhhCCHHHHhhcc
Confidence            566779999988765433333333333

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=96.28  E-value=0.0022  Score=57.85  Aligned_cols=65  Identities=20%  Similarity=0.278  Sum_probs=48.2

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-CCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      -.+|||||+|.||+.....++..   +.+|++ +|++++..   .      ++. .....++++++++  .|+|++++|.
T Consensus       139 g~tvGIiG~G~IG~~vA~~l~~~---G~~V~~-~dr~~~~~---~------~~~~~~~~~~l~ell~~--aDiV~l~~Pl  203 (315)
T 3pp8_A          139 EFSVGIMGAGVLGAKVAESLQAW---GFPLRC-WSRSRKSW---P------GVESYVGREELRAFLNQ--TRVLINLLPN  203 (315)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTT---TCCEEE-EESSCCCC---T------TCEEEESHHHHHHHHHT--CSEEEECCCC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHC---CCEEEE-EcCCchhh---h------hhhhhcccCCHHHHHhh--CCEEEEecCC
Confidence            46899999999999998888776   788775 67766521   1      221 0112678999987  8999999995


Q ss_pred             C
Q 017143           85 M   85 (376)
Q Consensus        85 ~   85 (376)
                      .
T Consensus       204 t  204 (315)
T 3pp8_A          204 T  204 (315)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}

Probab=96.24  E-value=0.013  Score=50.02  Aligned_cols=89  Identities=13%  Similarity=0.091  Sum_probs=56.0

Q ss_pred             CceeEEEE--eCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCc-----cCC-------HHHHh
Q 017143            5 DTVKYGII--GMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKV-----FPG-------HQELL   70 (376)
Q Consensus         5 ~~~~v~ii--G~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~-----~~~-------~~~~l   70 (376)
                      +|+||+|+  |.|......+.++.+.. .+.++++|+...++.  ...++|+++|+|+..     |.+       +.+.|
T Consensus        21 ~~~rI~~l~SG~g~~~~~~l~~l~~~~-~~~~I~~Vvt~~~~~--~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l   97 (229)
T 3auf_A           21 HMIRIGVLISGSGTNLQAILDGCREGR-IPGRVAVVISDRADA--YGLERARRAGVDALHMDPAAYPSRTAFDAALAERL   97 (229)
T ss_dssp             TCEEEEEEESSCCHHHHHHHHHHHTTS-SSEEEEEEEESSTTC--HHHHHHHHTTCEEEECCGGGSSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEEeCCcHHHHHHHHHHHhCC-CCCeEEEEEcCCCch--HHHHHHHHcCCCEEEECcccccchhhccHHHHHHH
Confidence            46899999  77777666666665531 257898888654433  467788999998321     222       22445


Q ss_pred             hCCCCCEEEEeCCCCccHHHHHHHHc
Q 017143           71 DSGLCDVVVVSTPNMTHYQILMDIIN   96 (376)
Q Consensus        71 ~~~~~D~V~i~t~~~~h~~~~~~al~   96 (376)
                      +..++|+++++.....=.+-++.+.+
T Consensus        98 ~~~~~Dliv~agy~~IL~~~~l~~~~  123 (229)
T 3auf_A           98 QAYGVDLVCLAGYMRLVRGPMLTAFP  123 (229)
T ss_dssp             HHTTCSEEEESSCCSCCCHHHHHHST
T ss_pred             HhcCCCEEEEcChhHhCCHHHHhhcc
Confidence            55679999998865443333444433

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=96.22  E-value=0.0055  Score=57.23  Aligned_cols=64  Identities=28%  Similarity=0.332  Sum_probs=49.5

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      -.++||||+|.||+.....+...   +.+|+ ++|+++..         ..+. +..+.+++++++.  .|+|++++|..
T Consensus       145 gktlGiIGlG~IG~~vA~~l~~~---G~~V~-~~d~~~~~---------~~~~-~~~~~~l~ell~~--aDvV~l~~P~t  208 (404)
T 1sc6_A          145 GKKLGIIGYGHIGTQLGILAESL---GMYVY-FYDIENKL---------PLGN-ATQVQHLSDLLNM--SDVVSLHVPEN  208 (404)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT---TCEEE-EECSSCCC---------CCTT-CEECSCHHHHHHH--CSEEEECCCSS
T ss_pred             CCEEEEEeECHHHHHHHHHHHHC---CCEEE-EEcCCchh---------ccCC-ceecCCHHHHHhc--CCEEEEccCCC
Confidence            35899999999999988888876   78876 57886642         1121 2356789999987  89999999965

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=96.21  E-value=0.019  Score=57.81  Aligned_cols=102  Identities=15%  Similarity=0.219  Sum_probs=61.3

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHH--------HHHhcCC-C----------CCccCCH
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALK--------LANAFDW-P----------LKVFPGH   66 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--------~~~~~~~-~----------~~~~~~~   66 (376)
                      ..||+|||+|.||......++..   +++|+ ++|++++.++++.+        +.+ .|. +          +...+|+
T Consensus       314 i~kV~VIGaG~MG~~iA~~la~a---G~~V~-l~D~~~~~~~~~~~~i~~~l~~~~~-~G~~~~~~~~~~~~~i~~~~d~  388 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSASK---GTPIL-MKDINEHGIEQGLAEAAKLLVGRVD-KGRMTPAKMAEVLNGIRPTLSY  388 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHT---TCCEE-EECSSHHHHHHHHHHHHHHHHHHHT-TTSSCHHHHHHHHHHEEEESSS
T ss_pred             CCEEEEECCChhhHHHHHHHHhC---CCEEE-EEECCHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHhcCeEEECCH
Confidence            45899999999999888888775   77766 78999986654322        111 121 0          1234566


Q ss_pred             HHHhhCCCCCEEEEeCCCCccH--HHHHHHHcCCCCCeEEEecCCCCCHHH
Q 017143           67 QELLDSGLCDVVVVSTPNMTHY--QILMDIINHPKPHHVLVEKPLCTTVAD  115 (376)
Q Consensus        67 ~~~l~~~~~D~V~i~t~~~~h~--~~~~~al~~~~g~~Vl~EKP~a~~~~e  115 (376)
                       +.+++  .|+|+.+.|.....  .+..+..+......|++----+.++.+
T Consensus       389 -~~~~~--aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~  436 (715)
T 1wdk_A          389 -GDFGN--VDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISL  436 (715)
T ss_dssp             -TTGGG--CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHH
T ss_pred             -HHHCC--CCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHHH
Confidence             45555  89999999988643  333332221122345553333455543

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.20  E-value=0.027  Score=44.74  Aligned_cols=92  Identities=9%  Similarity=0.109  Sum_probs=53.4

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCC-hhhHHHHHHHHHh--cCCCCCcc---CCHHHHhh--CCCCCE
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPH-LQSRQQALKLANA--FDWPLKVF---PGHQELLD--SGLCDV   77 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~-~~~~~~~~~~~~~--~~~~~~~~---~~~~~~l~--~~~~D~   77 (376)
                      +-+|.|+|+|.+|...+..|...   +.+++. +|++ ++   +++.+.+.  .|+. ..+   ++.+.+-+  -.+.|+
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~---g~~V~v-id~~~~~---~~~~~~~~~~~~~~-~i~gd~~~~~~l~~a~i~~ad~   74 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQR---GQNVTV-ISNLPED---DIKQLEQRLGDNAD-VIPGDSNDSSVLKKAGIDRCRA   74 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHT---TCCEEE-EECCCHH---HHHHHHHHHCTTCE-EEESCTTSHHHHHHHTTTTCSE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHC---CCCEEE-EECCChH---HHHHHHHhhcCCCe-EEEcCCCCHHHHHHcChhhCCE
Confidence            56899999999999988888775   678775 5665 34   33333322  2443 112   23332221  235899


Q ss_pred             EEEeCCCCccHHHHHHHH-cCCCCCeEEE
Q 017143           78 VVVSTPNMTHYQILMDII-NHPKPHHVLV  105 (376)
Q Consensus        78 V~i~t~~~~h~~~~~~al-~~~~g~~Vl~  105 (376)
                      |+++++++..-..+...+ +.....+|++
T Consensus        75 vi~~~~~d~~n~~~~~~a~~~~~~~~ii~  103 (153)
T 1id1_A           75 ILALSDNDADNAFVVLSAKDMSSDVKTVL  103 (153)
T ss_dssp             EEECSSCHHHHHHHHHHHHHHTSSSCEEE
T ss_pred             EEEecCChHHHHHHHHHHHHHCCCCEEEE
Confidence            999999864433333333 2102345665

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.19  E-value=0.016  Score=50.45  Aligned_cols=93  Identities=22%  Similarity=0.275  Sum_probs=55.0

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh-------------------hhHHHHHHHHHhcC--CCCCcc-
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL-------------------QSRQQALKLANAFD--WPLKVF-   63 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~-------------------~~~~~~~~~~~~~~--~~~~~~-   63 (376)
                      ..||.|||+|..|...+..|...   ++.-+.++|.|.                   .+.+.+.+..++.+  +.+..+ 
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~---Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~  104 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGA---GVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQ  104 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHT---TCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred             cCcEEEEccCHHHHHHHHHHHHc---CCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEe
Confidence            46999999999999988888886   776677888764                   22222222222222  111111 


Q ss_pred             -----CCHHHHhhCCCCCEEEEeCCCC-ccHHHHHHHHcCCCCCeEEE
Q 017143           64 -----PGHQELLDSGLCDVVVVSTPNM-THYQILMDIINHPKPHHVLV  105 (376)
Q Consensus        64 -----~~~~~~l~~~~~D~V~i~t~~~-~h~~~~~~al~~~~g~~Vl~  105 (376)
                           ++.++++..  .|+|+.++.+. ....+...|.+  .+++++.
T Consensus       105 ~~~~~~~~~~~~~~--~DvVi~~~d~~~~r~~l~~~~~~--~~~p~i~  148 (251)
T 1zud_1          105 QRLTGEALKDAVAR--ADVVLDCTDNMATRQEINAACVA--LNTPLIT  148 (251)
T ss_dssp             SCCCHHHHHHHHHH--CSEEEECCSSHHHHHHHHHHHHH--TTCCEEE
T ss_pred             ccCCHHHHHHHHhc--CCEEEECCCCHHHHHHHHHHHHH--hCCCEEE
Confidence                 134556654  78888888753 33344444556  5666554

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=96.19  E-value=0.0055  Score=57.18  Aligned_cols=64  Identities=27%  Similarity=0.313  Sum_probs=48.4

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      .++||||+|.||+.....+...   +.+|+ ++|+++..   .     ..+  ...+.+++++++.  .|+|++++|...
T Consensus       157 ktvGIIGlG~IG~~vA~~l~~~---G~~V~-~yd~~~~~---~-----~~~--~~~~~sl~ell~~--aDvV~lhvPlt~  220 (416)
T 3k5p_A          157 KTLGIVGYGNIGSQVGNLAESL---GMTVR-YYDTSDKL---Q-----YGN--VKPAASLDELLKT--SDVVSLHVPSSK  220 (416)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCEEE-EECTTCCC---C-----BTT--BEECSSHHHHHHH--CSEEEECCCC--
T ss_pred             CEEEEEeeCHHHHHHHHHHHHC---CCEEE-EECCcchh---c-----ccC--cEecCCHHHHHhh--CCEEEEeCCCCH
Confidence            5899999999999988888776   78877 57876531   0     112  2356899999987  899999999643

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=96.18  E-value=0.016  Score=52.28  Aligned_cols=74  Identities=22%  Similarity=0.296  Sum_probs=45.9

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCc--EEEEEeCCChhhHHHHH-HHHHh--cCCCCCc-cCCHHHHhhCCCCCEEEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGV--SVVCIADPHLQSRQQAL-KLANA--FDWPLKV-FPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~--~~~~v~d~~~~~~~~~~-~~~~~--~~~~~~~-~~~~~~~l~~~~~D~V~i   80 (376)
                      +||+|||+|.+|...+..+...   +.  +| .++|+++++++... .+...  +..+.+. .++++ .++  +.|+|++
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~---g~~~~V-~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~-~~~--~aDvVii   73 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMK---GFAREM-VLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYA-DLK--GSDVVIV   73 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH---TCCSEE-EEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGG-GGT--TCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhC---CCCCeE-EEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCCHH-HhC--CCCEEEE
Confidence            4899999999999888877765   33  54 47899987544321 11111  1111111 24543 444  4899999


Q ss_pred             eCCCCcc
Q 017143           81 STPNMTH   87 (376)
Q Consensus        81 ~t~~~~h   87 (376)
                      +++...+
T Consensus        74 av~~~~~   80 (319)
T 1a5z_A           74 AAGVPQK   80 (319)
T ss_dssp             CCCCCCC
T ss_pred             ccCCCCC
Confidence            9997553

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.18  E-value=0.018  Score=52.68  Aligned_cols=132  Identities=14%  Similarity=0.159  Sum_probs=82.9

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      -+|.|+|+|.+|...+..++..   +.+++++ ++++++++    +++++|.+ .++.+.++ +.. .+|+|+-++....
T Consensus       178 ~~VlV~GaG~vG~~a~qla~~~---Ga~Vi~~-~~~~~~~~----~~~~lGa~-~v~~~~~~-~~~-~~D~vid~~g~~~  246 (348)
T 3two_A          178 TKVGVAGFGGLGSMAVKYAVAM---GAEVSVF-ARNEHKKQ----DALSMGVK-HFYTDPKQ-CKE-ELDFIISTIPTHY  246 (348)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHT---TCEEEEE-CSSSTTHH----HHHHTTCS-EEESSGGG-CCS-CEEEEEECCCSCC
T ss_pred             CEEEEECCcHHHHHHHHHHHHC---CCeEEEE-eCCHHHHH----HHHhcCCC-eecCCHHH-Hhc-CCCEEEECCCcHH
Confidence            4799999999998877666654   6787764 66666543    44567765 44444333 333 6999999999887


Q ss_pred             cHHHHHHHHcCCCCCeEEEecCC----C-CCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCce
Q 017143           87 HYQILMDIINHPKPHHVLVEKPL----C-TTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQV  158 (376)
Q Consensus        87 h~~~~~~al~~~~g~~Vl~EKP~----a-~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i  158 (376)
                      ..+.+.++++.+ |+-|++-.|.    . .+.      .... -..++.+. +........+..+.+++++|.|-.+
T Consensus       247 ~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~------~~~~-~~~~~~i~-g~~~~~~~~~~~~~~l~~~g~l~~~  314 (348)
T 3two_A          247 DLKDYLKLLTYN-GDLALVGLPPVEVAPVLSV------FDFI-HLGNRKVY-GSLIGGIKETQEMVDFSIKHNIYPE  314 (348)
T ss_dssp             CHHHHHTTEEEE-EEEEECCCCCGGGCCEEEH------HHHH-HTCSCEEE-ECCSCCHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHhcC-CEEEEECCCCCCCcccCCH------HHHH-hhCCeEEE-EEecCCHHHHHHHHHHHHhCCCCce
Confidence            888888988753 6666664332    2 221      1122 12244443 3333333557778888888877543

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=96.17  E-value=0.0032  Score=55.89  Aligned_cols=78  Identities=14%  Similarity=0.101  Sum_probs=50.0

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc--CC--CC-CccCCHHHHhhCCCCCEEEEe
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF--DW--PL-KVFPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~--~~--~~-~~~~~~~~~l~~~~~D~V~i~   81 (376)
                      +||+|||+|.+|......|.+.   +.+|+ ++++++++.   +++....  +.  +. ...++. +.++.  .|+|+++
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~---g~~V~-~~~r~~~~~---~~l~~~~~~~~~~~~~~~~~~~-~~~~~--~d~vi~~   70 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQ---GHEVQ-GWLRVPQPY---CSVNLVETDGSIFNESLTANDP-DFLAT--SDLLLVT   70 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCEEE-EECSSCCSE---EEEEEECTTSCEEEEEEEESCH-HHHHT--CSEEEEC
T ss_pred             CeEEEECcCHHHHHHHHHHHhC---CCCEE-EEEcCccce---eeEEEEcCCCceeeeeeeecCc-cccCC--CCEEEEE
Confidence            4899999999999888888775   66765 578887632   2222111  11  00 012443 45554  8999999


Q ss_pred             CCCCccHHHHHHH
Q 017143           82 TPNMTHYQILMDI   94 (376)
Q Consensus        82 t~~~~h~~~~~~a   94 (376)
                      +|+....+.+.+.
T Consensus        71 v~~~~~~~v~~~l   83 (291)
T 1ks9_A           71 LKAWQVSDAVKSL   83 (291)
T ss_dssp             SCGGGHHHHHHHH
T ss_pred             ecHHhHHHHHHHH
Confidence            9998765555444

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=96.17  E-value=0.0083  Score=54.00  Aligned_cols=114  Identities=15%  Similarity=0.152  Sum_probs=68.2

Q ss_pred             CCCCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHH--------HhcCCC-----------CC
Q 017143            1 MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLA--------NAFDWP-----------LK   61 (376)
Q Consensus         1 m~~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~--------~~~~~~-----------~~   61 (376)
                      |++...-||+|||+|.||......++..   +++|+ ++|++++.++++.+..        ++..+.           +.
T Consensus         1 Ma~p~~~~VaViGaG~MG~giA~~~a~~---G~~V~-l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~   76 (319)
T 3ado_A            1 MASPAAGDVLIVGSGLVGRSWAMLFASG---GFRVK-LYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLIS   76 (319)
T ss_dssp             ------CEEEEECCSHHHHHHHHHHHHT---TCCEE-EECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEE
T ss_pred             CCCCCCCeEEEECCcHHHHHHHHHHHhC---CCeEE-EEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcc
Confidence            6666567999999999999887777764   88866 7899998665443221        111111           12


Q ss_pred             ccCCHHHHhhCCCCCEEEEeCCCCccHHH--HHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHH
Q 017143           62 VFPGHQELLDSGLCDVVVVSTPNMTHYQI--LMDIINHPKPHHVLVEKPLCTTVADCKKVVDAA  123 (376)
Q Consensus        62 ~~~~~~~~l~~~~~D~V~i~t~~~~h~~~--~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a  123 (376)
                      .++++++.+++  .|+|+=+.|...-...  ..+.=+......|+.----++++.+   |.+..
T Consensus        77 ~~~~l~~a~~~--ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is~---ia~~~  135 (319)
T 3ado_A           77 SCTNLAEAVEG--VVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSK---LFTGL  135 (319)
T ss_dssp             EECCHHHHTTT--EEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHH---HHTTC
T ss_pred             cccchHhHhcc--CcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccchh---hhhhc
Confidence            35678888876  8999988887654332  2222121123456666666677766   44444

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=96.17  E-value=0.017  Score=53.39  Aligned_cols=130  Identities=16%  Similarity=0.140  Sum_probs=82.5

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc----CCHHHHhhC------CCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF----PGHQELLDS------GLCD   76 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~------~~~D   76 (376)
                      -+|.|+|+|.+|...+...+..   +...+.++++++++.+    +++++|.+ .++    .++.+.+.+      ..+|
T Consensus       184 ~~VlV~GaG~vG~~aiqlak~~---Ga~~Vi~~~~~~~~~~----~a~~lGa~-~vi~~~~~~~~~~i~~~~~~~~gg~D  255 (370)
T 4ej6_A          184 STVAILGGGVIGLLTVQLARLA---GATTVILSTRQATKRR----LAEEVGAT-ATVDPSAGDVVEAIAGPVGLVPGGVD  255 (370)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCSEEEEECSCHHHHH----HHHHHTCS-EEECTTSSCHHHHHHSTTSSSTTCEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHc---CCCEEEEECCCHHHHH----HHHHcCCC-EEECCCCcCHHHHHHhhhhccCCCCC
Confidence            4799999999998877666654   7733445677776443    44556655 222    345444443      2589


Q ss_pred             EEEEeCCCCccHHHHHHHHcCCCCCeEEEec-----CCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHH
Q 017143           77 VVVVSTPNMTHYQILMDIINHPKPHHVLVEK-----PLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVK  151 (376)
Q Consensus        77 ~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EK-----P~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~  151 (376)
                      +|+-++........+.++++.+ |+-|++--     ++..+.      .... .+ ++.+.-.+.  +...+..+.++++
T Consensus       256 vvid~~G~~~~~~~~~~~l~~~-G~vv~~G~~~~~~~~~~~~------~~~~-~~-~~~i~g~~~--~~~~~~~~~~l~~  324 (370)
T 4ej6_A          256 VVIECAGVAETVKQSTRLAKAG-GTVVILGVLPQGEKVEIEP------FDIL-FR-ELRVLGSFI--NPFVHRRAADLVA  324 (370)
T ss_dssp             EEEECSCCHHHHHHHHHHEEEE-EEEEECSCCCTTCCCCCCH------HHHH-HT-TCEEEECCS--CTTCHHHHHHHHH
T ss_pred             EEEECCCCHHHHHHHHHHhccC-CEEEEEeccCCCCccccCH------HHHH-hC-CcEEEEecc--ChHHHHHHHHHHH
Confidence            9999998777788888888843 66666532     333343      2233 33 444444333  3445888899999


Q ss_pred             cCCC
Q 017143          152 SGSI  155 (376)
Q Consensus       152 ~g~i  155 (376)
                      +|++
T Consensus       325 ~g~i  328 (370)
T 4ej6_A          325 TGAI  328 (370)
T ss_dssp             TTCS
T ss_pred             cCCC
Confidence            9887

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=96.16  E-value=0.001  Score=58.85  Aligned_cols=121  Identities=12%  Similarity=0.151  Sum_probs=71.4

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      .-++.|+|+|.+|+..+..|...   +++-+.|++|+.+   +++++++++.  ...+++.++++.+  .|+|+.+||..
T Consensus       117 ~k~vlvlGaGg~g~aia~~L~~~---G~~~v~v~~R~~~---~a~~la~~~~--~~~~~~~~~~~~~--aDiVInaTp~G  186 (277)
T 3don_A          117 DAYILILGAGGASKGIANELYKI---VRPTLTVANRTMS---RFNNWSLNIN--KINLSHAESHLDE--FDIIINTTPAG  186 (277)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHTT---CCSCCEEECSCGG---GGTTCCSCCE--EECHHHHHHTGGG--CSEEEECCC--
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC---CCCEEEEEeCCHH---HHHHHHHhcc--cccHhhHHHHhcC--CCEEEECccCC
Confidence            35899999999999988888875   6633557899988   4555554322  1234455555555  89999999976


Q ss_pred             ccHHH----HHHHHcCCCCCeEEEe---cCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHH
Q 017143           86 THYQI----LMDIINHPKPHHVLVE---KPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKL  146 (376)
Q Consensus        86 ~h~~~----~~~al~~~~g~~Vl~E---KP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~  146 (376)
                      .+...    -...++  .+ .+.++   +|.-     . .+.+.|+++ |+.+.-|.......+....
T Consensus       187 m~~~~~~~l~~~~l~--~~-~~V~D~vY~P~~-----T-~ll~~A~~~-G~~~~~Gl~MLv~Qa~~~f  244 (277)
T 3don_A          187 MNGNTDSVISLNRLA--SH-TLVSDIVYNPYK-----T-PILIEAEQR-GNPIYNGLDMFVHQGAESF  244 (277)
T ss_dssp             -----CCSSCCTTCC--SS-CEEEESCCSSSS-----C-HHHHHHHHT-TCCEECTHHHHHHHHHHHH
T ss_pred             CCCCCcCCCCHHHcC--CC-CEEEEecCCCCC-----C-HHHHHHHHC-cCEEeCCHHHHHHHHHHHH
Confidence            54321    122344  33 45455   4442     2 366667454 7777777655544444333

>3v1y_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosol; rossmann fold; HET: NAD; 1.86A {Oryza sativa japonica group} PDB: 3e5r_O* 3e6a_O

Probab=96.11  E-value=0.023  Score=51.09  Aligned_cols=98  Identities=22%  Similarity=0.270  Sum_probs=66.6

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCC--ChhhHHHHHHHHHhcC-------C-CC---------------
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADP--HLQSRQQALKLANAFD-------W-PL---------------   60 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~--~~~~~~~~~~~~~~~~-------~-~~---------------   60 (376)
                      ++||||-|.|+||+..++++...  +++++++|-|+  +.+   ...-+- +|.       - .+               
T Consensus         3 ~~kv~INGfGrIGr~v~R~~~~~--~~~~ivaiNd~~~d~~---~~a~l~-kyDS~hG~f~~~~v~~~~~~~l~i~Gk~I   76 (337)
T 3v1y_O            3 KIKIGINGFGRIGRLVARVALQS--EDVELVAVNDPFITTD---YMTYMF-KYDTVHGQWKHSDIKIKDSKTLLLGEKPV   76 (337)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTC--SSEEEEEEECTTSCHH---HHHHHH-HCCTTTCCCCSSCEEEEETTEEEETTEEE
T ss_pred             ceEEEEECCChHHHHHHHHHHhC--CCcEEEEEeCCCCCHH---HHHHHh-hhccCCCcccCceEEEcCCcEEEECCEEE
Confidence            69999999999999988887765  78999999997  433   222222 221       1 10               


Q ss_pred             Ccc--CCHHHHhh-CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCC
Q 017143           61 KVF--PGHQELLD-SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLC  110 (376)
Q Consensus        61 ~~~--~~~~~~l~-~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a  110 (376)
                      +++  .+.+++-. +..+|+|+-||.-..-.+.+..++++| -|-|++.-|.+
T Consensus        77 ~v~~e~dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aG-AkkViIsaps~  128 (337)
T 3v1y_O           77 TVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGG-AKKVVISAPSK  128 (337)
T ss_dssp             EEECCSSGGGCCHHHHTCCEEEECSSSCCSHHHHTHHHHTT-CCEEEESSCCS
T ss_pred             EEEEecCcccCCccccCCcEEEEeccccCCHHHHHHHHHcC-CCEEEECCCCC
Confidence            011  11221111 125899999999999999999999955 35688887753

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=96.11  E-value=0.034  Score=56.05  Aligned_cols=100  Identities=19%  Similarity=0.183  Sum_probs=61.3

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH-------hcCC-C----------CCccCCHH
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN-------AFDW-P----------LKVFPGHQ   67 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~-------~~~~-~----------~~~~~~~~   67 (376)
                      +.||+|||+|.||......++..   +++|+ ++|++++.++++.+..+       +.|. +          +...+|+ 
T Consensus       312 ~~kV~VIGaG~MG~~iA~~la~a---G~~V~-l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-  386 (725)
T 2wtb_A          312 IKKVAIIGGGLMGSGIATALILS---NYPVI-LKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-  386 (725)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTT---TCCEE-EECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-
T ss_pred             CcEEEEEcCCHhhHHHHHHHHhC---CCEEE-EEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-
Confidence            46899999999999888888775   77866 68999986654422100       0111 0          1244666 


Q ss_pred             HHhhCCCCCEEEEeCCCCccH--HHHHH---HHcCCCCCeEEEecCCCCCHHH
Q 017143           68 ELLDSGLCDVVVVSTPNMTHY--QILMD---IINHPKPHHVLVEKPLCTTVAD  115 (376)
Q Consensus        68 ~~l~~~~~D~V~i~t~~~~h~--~~~~~---al~~~~g~~Vl~EKP~a~~~~e  115 (376)
                      +.+++  .|+|+++.|.....  .+..+   .++  . ..|++--.-+.++.+
T Consensus       387 ~~~~~--aDlVIeaVpe~~~vk~~v~~~l~~~~~--~-~~IlasntStl~i~~  434 (725)
T 2wtb_A          387 ESFRD--VDMVIEAVIENISLKQQIFADLEKYCP--Q-HCILASNTSTIDLNK  434 (725)
T ss_dssp             GGGTT--CSEEEECCCSCHHHHHHHHHHHHHHSC--T-TCEEEECCSSSCHHH
T ss_pred             HHHCC--CCEEEEcCcCCHHHHHHHHHHHHhhCC--C-CcEEEeCCCCCCHHH
Confidence            34554  89999999988643  33222   334  3 346654444555554

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=96.08  E-value=0.02  Score=51.72  Aligned_cols=75  Identities=21%  Similarity=0.155  Sum_probs=47.8

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHH-HHHHHHHh---c--CCCCCccCCHHHHhhCCCCCE
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQ-QALKLANA---F--DWPLKVFPGHQELLDSGLCDV   77 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~~~---~--~~~~~~~~~~~~~l~~~~~D~   77 (376)
                      |+++||+|||+|.+|...+..++..  +-.+ +.++|+++++.+ .+.++...   .  +..+..++++ +.+++  .|+
T Consensus         3 m~~~kI~iiGaG~vG~~~a~~l~~~--~~~~-v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~-~a~~~--aDv   76 (321)
T 3p7m_A            3 MARKKITLVGAGNIGGTLAHLALIK--QLGD-VVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDY-KDLEN--SDV   76 (321)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHT--TCCE-EEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTT--CSE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhC--CCce-EEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCH-HHHCC--CCE
Confidence            4568999999999999877777665  2225 458899987542 23333321   1  2222234666 45555  899


Q ss_pred             EEEeCCC
Q 017143           78 VVVSTPN   84 (376)
Q Consensus        78 V~i~t~~   84 (376)
                      |+++.+.
T Consensus        77 VIi~ag~   83 (321)
T 3p7m_A           77 VIVTAGV   83 (321)
T ss_dssp             EEECCSC
T ss_pred             EEEcCCc
Confidence            9999753

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=96.06  E-value=0.0091  Score=50.38  Aligned_cols=58  Identities=21%  Similarity=0.231  Sum_probs=42.1

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ++||+|||+|.+|......+.+.   +.+++ ++|++++                        .+  .+.|+|++++|+.
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~---g~~V~-~~~~~~~------------------------~~--~~aD~vi~av~~~   68 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIA---GHEVT-YYGSKDQ------------------------AT--TLGEIVIMAVPYP   68 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHT---TCEEE-EECTTCC------------------------CS--SCCSEEEECSCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC---CCEEE-EEcCCHH------------------------Hh--ccCCEEEEcCCcH
Confidence            57999999999999988888775   67766 5677643                        22  2489999999965


Q ss_pred             ccHHHHHH
Q 017143           86 THYQILMD   93 (376)
Q Consensus        86 ~h~~~~~~   93 (376)
                      ...+++.+
T Consensus        69 ~~~~v~~~   76 (209)
T 2raf_A           69 ALAALAKQ   76 (209)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            54444443

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=96.04  E-value=0.015  Score=51.21  Aligned_cols=73  Identities=22%  Similarity=0.300  Sum_probs=51.0

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCC--CCCccCCHHHHhhCCCCCEEEEeCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDW--PLKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      ..++.|+|+|.+|+..+..+...   +.+|+ |++|+++   ++++++++++.  .+.. .+++++.+ ..+|+|+.+||
T Consensus       119 ~k~vlViGaGg~g~a~a~~L~~~---G~~V~-v~~R~~~---~~~~la~~~~~~~~~~~-~~~~~~~~-~~~DivVn~t~  189 (271)
T 1nyt_A          119 GLRILLIGAGGASRGVLLPLLSL---DCAVT-ITNRTVS---RAEELAKLFAHTGSIQA-LSMDELEG-HEFDLIINATS  189 (271)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT---TCEEE-EECSSHH---HHHHHHHHTGGGSSEEE-CCSGGGTT-CCCSEEEECCS
T ss_pred             CCEEEEECCcHHHHHHHHHHHHc---CCEEE-EEECCHH---HHHHHHHHhhccCCeeE-ecHHHhcc-CCCCEEEECCC
Confidence            35899999999999998888886   56655 7899987   56666665432  1111 23444433 45999999999


Q ss_pred             CCcc
Q 017143           84 NMTH   87 (376)
Q Consensus        84 ~~~h   87 (376)
                      ...+
T Consensus       190 ~~~~  193 (271)
T 1nyt_A          190 SGIS  193 (271)
T ss_dssp             CGGG
T ss_pred             CCCC
Confidence            7654

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.04  E-value=0.012  Score=56.02  Aligned_cols=93  Identities=19%  Similarity=0.118  Sum_probs=59.8

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH-HHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSR-QQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      ..||.|||+|..|...+..|.+.   +.+|. ++|..+... ...+.+ ++.|+++..-.+.++++.. ++|+|+++.--
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~---G~~V~-~~D~~~~~~~~~~~~L-~~~gi~~~~g~~~~~~~~~-~~d~vv~spgi   82 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKL---GAIVT-VNDGKPFDENPTAQSL-LEEGIKVVCGSHPLELLDE-DFCYMIKNPGI   82 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHT---TCEEE-EEESSCGGGCHHHHHH-HHTTCEEEESCCCGGGGGS-CEEEEEECTTS
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhC---CCEEE-EEeCCcccCChHHHHH-HhCCCEEEECCChHHhhcC-CCCEEEECCcC
Confidence            46899999999998766666664   88877 478754211 123333 3458762111223445443 27999887665


Q ss_pred             CccHHHHHHHHcCCCCCeEEEe
Q 017143           85 MTHYQILMDIINHPKPHHVLVE  106 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~~Vl~E  106 (376)
                      ..+.+.+.+|.+  +|.+|+.|
T Consensus        83 ~~~~p~~~~a~~--~gi~v~~~  102 (451)
T 3lk7_A           83 PYNNPMVKKALE--KQIPVLTE  102 (451)
T ss_dssp             CTTSHHHHHHHH--TTCCEECH
T ss_pred             CCCChhHHHHHH--CCCcEEeH
Confidence            555566788889  88998865

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=95.96  E-value=0.034  Score=50.57  Aligned_cols=136  Identities=14%  Similarity=0.156  Sum_probs=79.8

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc----CCHHHHhhC--CCCCEEEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF----PGHQELLDS--GLCDVVVV   80 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~--~~~D~V~i   80 (376)
                      -+|.|+|+|.+|...+..++..   +.+++++ ++++++++    +++++|.+ .++    .++.+.+.+  ..+|+|+.
T Consensus       168 ~~VlV~GaG~vG~~a~qla~~~---Ga~Vi~~-~~~~~~~~----~~~~lGa~-~~i~~~~~~~~~~~~~~~g~~d~vid  238 (340)
T 3s2e_A          168 QWVVISGIGGLGHVAVQYARAM---GLRVAAV-DIDDAKLN----LARRLGAE-VAVNARDTDPAAWLQKEIGGAHGVLV  238 (340)
T ss_dssp             SEEEEECCSTTHHHHHHHHHHT---TCEEEEE-ESCHHHHH----HHHHTTCS-EEEETTTSCHHHHHHHHHSSEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHC---CCeEEEE-eCCHHHHH----HHHHcCCC-EEEeCCCcCHHHHHHHhCCCCCEEEE
Confidence            4789999999998877666654   7787764 56666443    44566754 222    234333331  25899999


Q ss_pred             eCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCce
Q 017143           81 STPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQV  158 (376)
Q Consensus        81 ~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i  158 (376)
                      ++......+.+..+++.+ |+-|++--+.....-.   +.... .+ ++.+. +........+..+.+++++|+|-.+
T Consensus       239 ~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~---~~~~~-~~-~~~i~-g~~~~~~~~~~~~~~l~~~g~l~~~  309 (340)
T 3s2e_A          239 TAVSPKAFSQAIGMVRRG-GTIALNGLPPGDFGTP---IFDVV-LK-GITIR-GSIVGTRSDLQESLDFAAHGDVKAT  309 (340)
T ss_dssp             SSCCHHHHHHHHHHEEEE-EEEEECSCCSSEEEEE---HHHHH-HT-TCEEE-ECCSCCHHHHHHHHHHHHTTSCCCC
T ss_pred             eCCCHHHHHHHHHHhccC-CEEEEeCCCCCCCCCC---HHHHH-hC-CeEEE-EEecCCHHHHHHHHHHHHhCCCCce
Confidence            998777888888888743 6555553322110001   12223 22 33332 3322233567777788888777543

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=95.94  E-value=0.0076  Score=54.79  Aligned_cols=102  Identities=15%  Similarity=0.346  Sum_probs=67.3

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ..+|||||+|.+|+..+..++..   +.+|+ ++|+++++.      ..+ .+   .+.+++++++.  .|+|++++|..
T Consensus       145 g~~vgIiG~G~IG~~~A~~l~~~---G~~V~-~~d~~~~~~------~~~-~~---~~~~l~ell~~--aDvV~~~~P~~  208 (333)
T 1dxy_A          145 QQTVGVMGTGHIGQVAIKLFKGF---GAKVI-AYDPYPMKG------DHP-DF---DYVSLEDLFKQ--SDVIDLHVPGI  208 (333)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHT---TCEEE-EECSSCCSS------CCT-TC---EECCHHHHHHH--CSEEEECCCCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHC---CCEEE-EECCCcchh------hHh-cc---ccCCHHHHHhc--CCEEEEcCCCc
Confidence            36899999999999998888876   78876 578877521      111 12   35689999987  89999999975


Q ss_pred             ccH-----HHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCC
Q 017143           86 THY-----QILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPD  128 (376)
Q Consensus        86 ~h~-----~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~  128 (376)
                      ...     .-....++  .| .+++.---. .+-+.+.|.++. +.++
T Consensus       209 ~~t~~li~~~~l~~mk--~g-a~lIn~srg-~~vd~~aL~~aL-~~g~  251 (333)
T 1dxy_A          209 EQNTHIINEAAFNLMK--PG-AIVINTARP-NLIDTQAMLSNL-KSGK  251 (333)
T ss_dssp             GGGTTSBCHHHHHHSC--TT-EEEEECSCT-TSBCHHHHHHHH-HTTS
T ss_pred             hhHHHHhCHHHHhhCC--CC-cEEEECCCC-cccCHHHHHHHH-HhCC
Confidence            421     22344566  43 555554332 334446677777 4433

>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O*

Probab=95.94  E-value=0.039  Score=49.42  Aligned_cols=98  Identities=21%  Similarity=0.284  Sum_probs=67.7

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCC--ChhhHHHHHHHHHhcC-----CC----------------CCc
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADP--HLQSRQQALKLANAFD-----WP----------------LKV   62 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~--~~~~~~~~~~~~~~~~-----~~----------------~~~   62 (376)
                      |+||||-|.|+||+..++++...  +++++++|-|+  +.+   ...-+- +|.     ++                +++
T Consensus         1 ~~kv~INGfGrIGr~v~R~~~~~--~~~~ivaiNd~~~d~~---~~a~l~-kyDS~hG~f~~~v~~~~~~l~i~Gk~I~v   74 (332)
T 3pym_A            1 MVRVAINGFGRIGRLVMRIALSR--PNVEVVALNDPFITND---YAAYMF-KYDSTHGRYAGEVSHDDKHIIVDGKKIAT   74 (332)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHS--TTCEEEEEECTTCCHH---HHHHHH-HCCTTTCSCSSCEEECSSEEEETTEEEEE
T ss_pred             CeEEEEECCCcHHHHHHHHHHhC--CCcEEEEEeCCCCCHH---HHHHHh-cccCCCCCCCCcEEEcCCEEEECCEEEEE
Confidence            47999999999999988887765  78999999997  444   222222 221     00                111


Q ss_pred             c--CCHHHHhh-CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCC
Q 017143           63 F--PGHQELLD-SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLC  110 (376)
Q Consensus        63 ~--~~~~~~l~-~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a  110 (376)
                      +  .+.+++-. +..+|+|+-||.-..-.+.+..++++| -|-|++.-|.+
T Consensus        75 ~~e~dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aG-AkkViIsaps~  124 (332)
T 3pym_A           75 YQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAG-AKKVVITAPSS  124 (332)
T ss_dssp             ECCSSGGGSCTTTTTCSEEEECSSSSCSHHHHHHHHHTT-CSEEEESSCCS
T ss_pred             EeecccccCCccccCccEEEEecccccCHHHHHHHHHcC-CCEEEECCCCC
Confidence            2  23333321 236999999999999999999999965 35688887753

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=95.94  E-value=0.031  Score=51.92  Aligned_cols=89  Identities=18%  Similarity=0.248  Sum_probs=60.3

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH--HHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSR--QQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      --+|+|||.|.-|+.|..+|+..   +++|+.-. |.....  .+..+-|.+-|+.  +. +++|+.+.  .|+|++.+|
T Consensus        37 gK~IaVIGyGsQG~AqAlNLRDS---Gv~V~Vgl-r~~s~~e~~~S~~~A~~~Gf~--v~-~~~eA~~~--ADvV~~L~P  107 (491)
T 3ulk_A           37 GKKVVIVGCGAQGLNQGLNMRDS---GLDISYAL-RKEAIAEKRASWRKATENGFK--VG-TYEELIPQ--ADLVINLTP  107 (491)
T ss_dssp             TSEEEEESCSHHHHHHHHHHHHT---TCEEEEEE-CHHHHHTTCHHHHHHHHTTCE--EE-EHHHHGGG--CSEEEECSC
T ss_pred             CCEEEEeCCChHhHHHHhHHHhc---CCcEEEEe-CCCCcccccchHHHHHHCCCE--ec-CHHHHHHh--CCEEEEeCC
Confidence            36899999999999999888775   88866333 211100  0222334556765  43 58889887  899999999


Q ss_pred             CCccHHHHHH---HHcCCCCCeEEE
Q 017143           84 NMTHYQILMD---IINHPKPHHVLV  105 (376)
Q Consensus        84 ~~~h~~~~~~---al~~~~g~~Vl~  105 (376)
                      +..|..+...   .|+  .|+.+..
T Consensus       108 D~~q~~vy~~I~p~lk--~G~~L~f  130 (491)
T 3ulk_A          108 DKQHSDVVRTVQPLMK--DGAALGY  130 (491)
T ss_dssp             GGGHHHHHHHHGGGSC--TTCEEEE
T ss_pred             hhhHHHHHHHHHhhCC--CCCEEEe
Confidence            9999887654   355  4555443

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=95.93  E-value=0.016  Score=55.17  Aligned_cols=74  Identities=23%  Similarity=0.271  Sum_probs=53.4

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC--CHHHHhhC---CCCCEEE
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP--GHQELLDS---GLCDVVV   79 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~---~~~D~V~   79 (376)
                      ..|||.|+|+|.+|...+..|...   +.+++ |.|.+++   +++++.+++++. ..+.  +-.+.|++   .+.|+++
T Consensus         2 ~~M~iiI~G~G~vG~~la~~L~~~---~~~v~-vId~d~~---~~~~~~~~~~~~-~i~Gd~~~~~~L~~Agi~~ad~~i   73 (461)
T 4g65_A            2 NAMKIIILGAGQVGGTLAENLVGE---NNDIT-IVDKDGD---RLRELQDKYDLR-VVNGHASHPDVLHEAGAQDADMLV   73 (461)
T ss_dssp             CCEEEEEECCSHHHHHHHHHTCST---TEEEE-EEESCHH---HHHHHHHHSSCE-EEESCTTCHHHHHHHTTTTCSEEE
T ss_pred             CcCEEEEECCCHHHHHHHHHHHHC---CCCEE-EEECCHH---HHHHHHHhcCcE-EEEEcCCCHHHHHhcCCCcCCEEE
Confidence            468999999999999988777664   77876 6799988   567777788765 2222  22334432   4689999


Q ss_pred             EeCCCCc
Q 017143           80 VSTPNMT   86 (376)
Q Consensus        80 i~t~~~~   86 (376)
                      .+|+.+.
T Consensus        74 a~t~~De   80 (461)
T 4g65_A           74 AVTNTDE   80 (461)
T ss_dssp             ECCSCHH
T ss_pred             EEcCChH
Confidence            8888764

>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3vaz_P* 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O*

Probab=95.93  E-value=0.12  Score=46.47  Aligned_cols=99  Identities=27%  Similarity=0.364  Sum_probs=68.3

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcC-----CC----------------CCcc-
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFD-----WP----------------LKVF-   63 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~-----~~----------------~~~~-   63 (376)
                      ++||||-|.|+||+..++++...  +++++++|-|....  +...-+- +|.     ++                ++++ 
T Consensus         4 ~~kv~INGfGrIGr~v~R~~~~~--~~~~ivaind~~d~--~~~a~l~-kyDS~hG~f~~~v~~~~~~l~inGk~I~v~~   78 (338)
T 3lvf_P            4 AVKVAINGFGRIGRLAFRRIQEV--EGLEVVAVNDLTDD--DMLAHLL-KYDTMQGRFTGEVEVVDGGFRVNGKEVKSFS   78 (338)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTS--TTEEEEEEECSSCH--HHHHHHH-HCCTTTCCCSSCEEEETTEEEETTEEEEEEC
T ss_pred             cEEEEEECCCcHHHHHHHHHHHC--CCceEEEEecCCCH--HHHHHHh-ccCCCCCCcCCeEEEcCCEEEECCEEEEEEE
Confidence            58999999999999988887765  78999999985332  2222222 221     00                1112 


Q ss_pred             -CCHHHHhh-CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCC
Q 017143           64 -PGHQELLD-SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLC  110 (376)
Q Consensus        64 -~~~~~~l~-~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a  110 (376)
                       .+.+++-. +..+|+|+-||.-..-.+.+..++++| -|-|++.-|..
T Consensus        79 e~dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aG-AkkViISaps~  126 (338)
T 3lvf_P           79 EPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAG-AKKVLISAPAT  126 (338)
T ss_dssp             CSCGGGSCTTTTTCSEEEECSSSCCBHHHHHHHHHTT-CSEEEESSCCB
T ss_pred             ecccccCCccccCCCEEEEccCCcCCHHHHHHHHHcC-CCEEEECCCCC
Confidence             23333322 236999999999999999999999955 35688887764

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=95.93  E-value=0.011  Score=53.17  Aligned_cols=77  Identities=14%  Similarity=0.106  Sum_probs=52.6

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc----CCCC--CccCCH---HHHhhCCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF----DWPL--KVFPGH---QELLDSGLCD   76 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~----~~~~--~~~~~~---~~~l~~~~~D   76 (376)
                      .-++.|+|+|.+|+..+..|...   +++-+.|++|++++.++++++++++    +..+  ..+.+.   .+.+..  .|
T Consensus       148 gk~~lVlGAGGaaraia~~L~~~---G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~--~D  222 (312)
T 3t4e_A          148 GKTMVLLGAGGAATAIGAQAAIE---GIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALAS--AD  222 (312)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT---TCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHH--CS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHc---CCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccC--ce
Confidence            35899999999999988888876   7744568899944444666666543    3321  123444   445555  89


Q ss_pred             EEEEeCCCCcc
Q 017143           77 VVVVSTPNMTH   87 (376)
Q Consensus        77 ~V~i~t~~~~h   87 (376)
                      +||-+||-..+
T Consensus       223 iIINaTp~Gm~  233 (312)
T 3t4e_A          223 ILTNGTKVGMK  233 (312)
T ss_dssp             EEEECSSTTST
T ss_pred             EEEECCcCCCC
Confidence            99999997653

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=95.90  E-value=0.029  Score=51.62  Aligned_cols=132  Identities=11%  Similarity=0.013  Sum_probs=80.4

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc----CCHHHHhh----CCCCCEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF----PGHQELLD----SGLCDVV   78 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~----~~~~D~V   78 (376)
                      -+|.|+|+|.+|...+..++..   +.+++++ ++++++++.    ++++|.+ .++    .++.+.+.    ...+|+|
T Consensus       191 ~~VlV~G~G~vG~~a~qla~~~---Ga~Vi~~-~~~~~~~~~----~~~lGa~-~vi~~~~~~~~~~v~~~~~g~g~D~v  261 (363)
T 3uog_A          191 DRVVVQGTGGVALFGLQIAKAT---GAEVIVT-SSSREKLDR----AFALGAD-HGINRLEEDWVERVYALTGDRGADHI  261 (363)
T ss_dssp             CEEEEESSBHHHHHHHHHHHHT---TCEEEEE-ESCHHHHHH----HHHHTCS-EEEETTTSCHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHc---CCEEEEE-ecCchhHHH----HHHcCCC-EEEcCCcccHHHHHHHHhCCCCceEE
Confidence            4799999999998877766654   7787765 566664443    4455654 222    24433322    2369999


Q ss_pred             EEeCCCCccHHHHHHHHcCCCCCeEEEecCC----CCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCC
Q 017143           79 VVSTPNMTHYQILMDIINHPKPHHVLVEKPL----CTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGS  154 (376)
Q Consensus        79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~----a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~  154 (376)
                      +-++. ......+.++++. .|+-|++--+.    ..+.      .... .+ ++.+ .+........+..+.+++++|.
T Consensus       262 id~~g-~~~~~~~~~~l~~-~G~iv~~G~~~~~~~~~~~------~~~~-~~-~~~i-~g~~~~~~~~~~~~~~l~~~g~  330 (363)
T 3uog_A          262 LEIAG-GAGLGQSLKAVAP-DGRISVIGVLEGFEVSGPV------GPLL-LK-SPVV-QGISVGHRRALEDLVGAVDRLG  330 (363)
T ss_dssp             EEETT-SSCHHHHHHHEEE-EEEEEEECCCSSCEECCBT------THHH-HT-CCEE-EECCCCCHHHHHHHHHHHHHHT
T ss_pred             EECCC-hHHHHHHHHHhhc-CCEEEEEecCCCcccCcCH------HHHH-hC-CcEE-EEEecCCHHHHHHHHHHHHcCC
Confidence            99998 5567778888874 36666664322    2221      1223 23 3333 3433333456778888888887


Q ss_pred             CCce
Q 017143          155 IGQV  158 (376)
Q Consensus       155 iG~i  158 (376)
                      +-.+
T Consensus       331 l~~~  334 (363)
T 3uog_A          331 LKPV  334 (363)
T ss_dssp             CCCC
T ss_pred             Cccc
Confidence            7554

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=95.90  E-value=0.028  Score=52.54  Aligned_cols=64  Identities=19%  Similarity=0.282  Sum_probs=48.2

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t   82 (376)
                      -.+|+|||+|.+|+..+..++..   +.+|+ ++|+++.+   +.. +...|+.   +.++++++..  .|+|+.++
T Consensus       211 GktVgIiG~G~IG~~vA~~Lka~---Ga~Vi-v~D~~p~~---a~~-A~~~G~~---~~sL~eal~~--ADVVilt~  274 (436)
T 3h9u_A          211 GKTACVCGYGDVGKGCAAALRGF---GARVV-VTEVDPIN---ALQ-AAMEGYQ---VLLVEDVVEE--AHIFVTTT  274 (436)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT---TCEEE-EECSCHHH---HHH-HHHTTCE---ECCHHHHTTT--CSEEEECS
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHC---CCEEE-EECCChhh---hHH-HHHhCCe---ecCHHHHHhh--CCEEEECC
Confidence            36899999999999988888876   78865 68998863   222 2344643   4589999987  89998754

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=95.90  E-value=0.014  Score=52.26  Aligned_cols=72  Identities=14%  Similarity=0.217  Sum_probs=44.8

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-CCccCCHHHHhhCCCCCEEEEeCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      +.||+|||+|.+|......+...  .-+.-+.++|++++....+.++.. +..+ +..++|+ +.+++  .|+|+++..
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~--g~~~ev~L~Di~~~~~g~a~dl~~-~~~~~i~~t~d~-~~l~~--aD~Vi~aag   86 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAK--GIADRLVLLDLSEGTKGATMDLEI-FNLPNVEISKDL-SASAH--SKVVIFTVN   86 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECCC-----CHHHHHH-HTCTTEEEESCG-GGGTT--CSEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhc--CCCCEEEEEcCCcchHHHHHHHhh-hcCCCeEEeCCH-HHHCC--CCEEEEcCC
Confidence            57999999999998766666554  223335588998864344555543 2222 3456788 45655  899999973

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=95.90  E-value=0.071  Score=49.00  Aligned_cols=133  Identities=16%  Similarity=0.219  Sum_probs=76.9

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-CCccCCHHHHhhC-CCCCEEEEeCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LKVFPGHQELLDS-GLCDVVVVSTPN   84 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~-~~~D~V~i~t~~   84 (376)
                      -+|.|+|+|.+|...+..++..   +.+++++ +++++++   +.+.+++|.+ +-.+++.+.+.+. ..+|+|+.++..
T Consensus       189 ~~VlV~GaG~vG~~~~q~a~~~---Ga~Vi~~-~~~~~~~---~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~  261 (366)
T 1yqd_A          189 KHIGIVGLGGLGHVAVKFAKAF---GSKVTVI-STSPSKK---EEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSA  261 (366)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCEEEEE-ESCGGGH---HHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHC---CCEEEEE-eCCHHHH---HHHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCc
Confidence            4799999999999887766664   6787764 5666643   2333467755 1123443333221 258999999987


Q ss_pred             CccHHHHHHHHcCCCCCeEEEecCC---CCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCC
Q 017143           85 MTHYQILMDIINHPKPHHVLVEKPL---CTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIG  156 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~~Vl~EKP~---a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG  156 (376)
                      ......+.++++. .|+-|++--+.   ..+.      .... .+ ++.+. +........+..+-+++++|.+-
T Consensus       262 ~~~~~~~~~~l~~-~G~iv~~g~~~~~~~~~~------~~~~-~~-~~~i~-g~~~~~~~~~~~~~~l~~~g~l~  326 (366)
T 1yqd_A          262 VHPLLPLFGLLKS-HGKLILVGAPEKPLELPA------FSLI-AG-RKIVA-GSGIGGMKETQEMIDFAAKHNIT  326 (366)
T ss_dssp             CCCSHHHHHHEEE-EEEEEECCCCSSCEEECH------HHHH-TT-TCEEE-ECCSCCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHhc-CCEEEEEccCCCCCCcCH------HHHH-hC-CcEEE-EecCCCHHHHHHHHHHHHcCCCC
Confidence            6555677788874 36555553322   1221      2233 22 43333 33222234566777777787764

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=95.90  E-value=0.019  Score=53.86  Aligned_cols=104  Identities=17%  Similarity=0.235  Sum_probs=64.0

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCH--HHHhhC---CCCCEEEE
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGH--QELLDS---GLCDVVVV   80 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~---~~~D~V~i   80 (376)
                      +.+|.|+|+|.+|+..+..|...   +.+++ ++|.++++   .+.+. ++|++ .+|.|.  .++|..   .+.|+|++
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~---g~~vv-vId~d~~~---v~~~~-~~g~~-vi~GDat~~~~L~~agi~~A~~viv   74 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSS---GVKMV-VLDHDPDH---IETLR-KFGMK-VFYGDATRMDLLESAGAAKAEVLIN   74 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT---TCCEE-EEECCHHH---HHHHH-HTTCC-CEESCTTCHHHHHHTTTTTCSEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC---CCCEE-EEECCHHH---HHHHH-hCCCe-EEEcCCCCHHHHHhcCCCccCEEEE
Confidence            46899999999999998888875   78877 56899884   33333 45766 334332  233432   45899999


Q ss_pred             eCCCCccHHHHHHHH-cCCCCCeEEEecCCCCCHHHHHHHHH
Q 017143           81 STPNMTHYQILMDII-NHPKPHHVLVEKPLCTTVADCKKVVD  121 (376)
Q Consensus        81 ~t~~~~h~~~~~~al-~~~~g~~Vl~EKP~a~~~~e~~~l~~  121 (376)
                      ++++...-..+...+ +.+...+|++   -+.+..++..|.+
T Consensus        75 ~~~~~~~n~~i~~~ar~~~p~~~Iia---ra~~~~~~~~L~~  113 (413)
T 3l9w_A           75 AIDDPQTNLQLTEMVKEHFPHLQIIA---RARDVDHYIRLRQ  113 (413)
T ss_dssp             CCSSHHHHHHHHHHHHHHCTTCEEEE---EESSHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHhCCCCeEEE---EECCHHHHHHHHH
Confidence            999865443333333 2112335665   2344555554433

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=95.88  E-value=0.0087  Score=54.37  Aligned_cols=64  Identities=20%  Similarity=0.405  Sum_probs=48.9

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ..+|||||+|.+|+..+..++..   +.+|+ ++|+++++.     + ++ .+   .+.+++++++.  .|+|++++|..
T Consensus       146 g~~vgIiG~G~IG~~~A~~l~~~---G~~V~-~~d~~~~~~-----~-~~-~~---~~~~l~ell~~--aDvV~~~~p~t  209 (331)
T 1xdw_A          146 NCTVGVVGLGRIGRVAAQIFHGM---GATVI-GEDVFEIKG-----I-ED-YC---TQVSLDEVLEK--SDIITIHAPYI  209 (331)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHT---TCEEE-EECSSCCCS-----C-TT-TC---EECCHHHHHHH--CSEEEECCCCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHC---CCEEE-EECCCccHH-----H-Hh-cc---ccCCHHHHHhh--CCEEEEecCCc
Confidence            46899999999999988888876   78876 578877531     1 12 12   35689999987  89999999964

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=95.86  E-value=0.053  Score=49.67  Aligned_cols=134  Identities=11%  Similarity=0.148  Sum_probs=76.8

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCc--cCCHHHHhhC-CCCCEEEEeCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKV--FPGHQELLDS-GLCDVVVVSTP   83 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~-~~~D~V~i~t~   83 (376)
                      -+|.|+|+|.+|...+..++..   +.+++++ ++++++   .+.+.+++|.+ .+  +++.+.+.+. ..+|+|+-++.
T Consensus       182 ~~VlV~GaG~vG~~a~qlak~~---Ga~Vi~~-~~~~~~---~~~~~~~lGa~-~vi~~~~~~~~~~~~~g~D~vid~~g  253 (357)
T 2cf5_A          182 LRGGILGLGGVGHMGVKIAKAM---GHHVTVI-SSSNKK---REEALQDLGAD-DYVIGSDQAKMSELADSLDYVIDTVP  253 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH---TCEEEEE-ESSTTH---HHHHHTTSCCS-CEEETTCHHHHHHSTTTEEEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHC---CCeEEEE-eCChHH---HHHHHHHcCCc-eeeccccHHHHHHhcCCCCEEEECCC
Confidence            4799999999999887766665   6787765 555553   33333367765 22  3443333221 25899999998


Q ss_pred             CCccHHHHHHHHcCCCCCeEEEecCCCC-C-HHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCc
Q 017143           84 NMTHYQILMDIINHPKPHHVLVEKPLCT-T-VADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQ  157 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~EKP~a~-~-~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~  157 (376)
                      .....+.+.++++. .|+-|++--+-.. + ..    .. .. .+ ++.+. +........+..+-+++++|++-.
T Consensus       254 ~~~~~~~~~~~l~~-~G~iv~~G~~~~~~~~~~----~~-~~-~~-~~~i~-g~~~~~~~~~~~~~~l~~~g~l~~  320 (357)
T 2cf5_A          254 VHHALEPYLSLLKL-DGKLILMGVINNPLQFLT----PL-LM-LG-RKVIT-GSFIGSMKETEEMLEFCKEKGLSS  320 (357)
T ss_dssp             SCCCSHHHHTTEEE-EEEEEECSCCSSCCCCCH----HH-HH-HH-TCEEE-ECCSCCHHHHHHHHHHHHHTTCCC
T ss_pred             ChHHHHHHHHHhcc-CCEEEEeCCCCCCccccC----HH-HH-hC-ccEEE-EEccCCHHHHHHHHHHHHcCCCCC
Confidence            76666777788874 3666665332111 1 11    11 22 12 33332 322222245667777788877743

>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural genomics, national institute of allergy AN infectious diseases; 2.55A {Bacillus anthracis}

Probab=95.80  E-value=0.03  Score=50.36  Aligned_cols=101  Identities=18%  Similarity=0.202  Sum_probs=68.5

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh------cCCC--------------CCcc-
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA------FDWP--------------LKVF-   63 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~------~~~~--------------~~~~-   63 (376)
                      .|+||||-|.|+||+..++++...  +++++++|-|+..  .+...-+-+.      |.-.              ++++ 
T Consensus         3 ~~~kv~INGfGrIGr~v~Ra~~~~--~~~~ivaINd~~d--~~~~a~llkyDS~hG~f~~~v~~~~~~l~inGk~I~v~~   78 (345)
T 4dib_A            3 AMTRVAINGFGRIGRMVFRQAIKE--SAFEIVAINASYP--SETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKMIRLLN   78 (345)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTTC--SSSEEEEEECSSC--HHHHHHHHHEETTTEECSSCEEECSSEEEETTEEEEEEC
T ss_pred             ccEEEEEECCCcHHHHHHHHHHhC--CCceEEEEcCCCC--HHHHHHHhcccCCCCCCCCcEEEcCCEEEECCEEEEEee
Confidence            368999999999999988887766  7899999999843  2223222221      1100              1122 


Q ss_pred             -CCHHHHhh-CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCC
Q 017143           64 -PGHQELLD-SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLC  110 (376)
Q Consensus        64 -~~~~~~l~-~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a  110 (376)
                       .+.+++-. +..+|+|+-||.-..-.+.+..++++|+ |-|++.-|..
T Consensus        79 e~dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGA-kkViISaps~  126 (345)
T 4dib_A           79 NRDPKELPWTDLGVEVVIEATGKFNSKEKAILHVEAGA-KKVILTAPGK  126 (345)
T ss_dssp             CSCGGGSCTTTTTEEEEEECSSSCCBHHHHTHHHHTTC-SEEEESSCCB
T ss_pred             cCChhhCCccccCccEEEEeccCcCCHHHHHHHHHCCC-CEEEECCCCC
Confidence             23333322 2368999999999999999999999653 5688877753

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=95.78  E-value=0.029  Score=52.44  Aligned_cols=64  Identities=20%  Similarity=0.228  Sum_probs=47.9

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      -+++|||+|.+|+..+..++..   +.+|+ ++|+++.+   +.+ +...|+.   +.++++++..  .|+|+.++.
T Consensus       248 KTVgVIG~G~IGr~vA~~lraf---Ga~Vi-v~d~dp~~---a~~-A~~~G~~---vv~LeElL~~--ADIVv~atg  311 (464)
T 3n58_A          248 KVAVVCGYGDVGKGSAQSLAGA---GARVK-VTEVDPIC---ALQ-AAMDGFE---VVTLDDAAST--ADIVVTTTG  311 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCEEE-EECSSHHH---HHH-HHHTTCE---ECCHHHHGGG--CSEEEECCS
T ss_pred             CEEEEECcCHHHHHHHHHHHHC---CCEEE-EEeCCcch---hhH-HHhcCce---eccHHHHHhh--CCEEEECCC
Confidence            5899999999999988888776   77866 68988863   222 2344643   3579999986  899988764

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=95.77  E-value=0.016  Score=52.03  Aligned_cols=126  Identities=16%  Similarity=0.126  Sum_probs=73.0

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh----cCCC--CCccCCHH---HHhhCCCCCE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA----FDWP--LKVFPGHQ---ELLDSGLCDV   77 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~----~~~~--~~~~~~~~---~~l~~~~~D~   77 (376)
                      -++.|+|+|.+|+..+..|...   +++-+.|++|+++..+++++++++    ++..  +..+++.+   +.+..  .|+
T Consensus       155 k~~lVlGaGG~g~aia~~L~~~---Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~--aDi  229 (315)
T 3tnl_A          155 KKMTICGAGGAATAICIQAALD---GVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAE--SVI  229 (315)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT---TCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHT--CSE
T ss_pred             CEEEEECCChHHHHHHHHHHHC---CCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcC--CCE
Confidence            5899999999999988888875   774455789983223356665544    3432  12344543   44554  899


Q ss_pred             EEEeCCCCccHH-----H-HHHHHcCCCCCeEEEe---cCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHH
Q 017143           78 VVVSTPNMTHYQ-----I-LMDIINHPKPHHVLVE---KPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLI  147 (376)
Q Consensus        78 V~i~t~~~~h~~-----~-~~~al~~~~g~~Vl~E---KP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k  147 (376)
                      ||-+||-..+..     + -...++  .+ .+.++   +|.     +. .|.+.|+++ |..+.-|.......+....+
T Consensus       230 IINaTp~Gm~~~~~~~p~~~~~~l~--~~-~~V~DlvY~P~-----~T-~ll~~A~~~-G~~~~~Gl~MLv~Qa~~af~  298 (315)
T 3tnl_A          230 FTNATGVGMKPFEGETLLPSADMLR--PE-LIVSDVVYKPT-----KT-RLLEIAEEQ-GCQTLNGLGMMLWQGAKAFE  298 (315)
T ss_dssp             EEECSSTTSTTSTTCCSCCCGGGCC--TT-CEEEESCCSSS-----SC-HHHHHHHHT-TCEEECSHHHHHHHHHHHHH
T ss_pred             EEECccCCCCCCCCCCCCCcHHHcC--CC-CEEEEeccCCC-----CC-HHHHHHHHC-CCeEeCcHHHHHHHHHHHHH
Confidence            999999655421     1 123344  33 44444   443     22 245555344 77776666555544444333

>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A*

Probab=95.77  E-value=0.051  Score=48.76  Aligned_cols=102  Identities=22%  Similarity=0.214  Sum_probs=67.1

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH------hcCCC--------------CCcc--
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN------AFDWP--------------LKVF--   63 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~------~~~~~--------------~~~~--   63 (376)
                      ++||||-|.|+||+..++++.....+++++++|-|+..  .+...-+-+      +|.-.              ++++  
T Consensus         2 ~~kv~INGfGrIGr~v~Ra~~~~~~~~~~ivaiNd~~d--~~~~a~l~kyDS~hG~f~~~v~~~~~~l~i~Gk~I~v~~e   79 (335)
T 3doc_A            2 AVRVAINGFGRIGRNILRAIVESGRTDIQVVAINDLGP--VETNAHLLRYDSVHGRFPKEVEVAGDTIDVGYGPIKVHAV   79 (335)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCSEEEEEEECSSC--HHHHHHHHHEETTTEECSSCCEECSSEEESSSSEEEEECC
T ss_pred             CEEEEEECCCcHHHHHHHHHHhccCCCeEEEEEeCCCC--HHHHHHHhcccCCCCCCCCeEEEecCEEEECCEEEEEEee
Confidence            58999999999999888876654225899999999832  222322222      11110              1111  


Q ss_pred             CCHHHHhh-CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCC
Q 017143           64 PGHQELLD-SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLC  110 (376)
Q Consensus        64 ~~~~~~l~-~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a  110 (376)
                      .+.+++-. +..+|+|+-||.-..-.+.+..++++| -|-|++.-|..
T Consensus        80 ~dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aG-AkkViIsaps~  126 (335)
T 3doc_A           80 RNPAELPWKEENVDIALECTGIFTSRDKAALHLEAG-AKRVIVSAPAD  126 (335)
T ss_dssp             SSTTSSCTTTTTCSEEEECSSSCCSHHHHTHHHHTT-CSEEEESSCCT
T ss_pred             cccccccccccCCCEEEEccCccCCHHHHHHHHHcC-CCEEEECCCCC
Confidence            12222211 236999999999999999999999965 35688887753

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=95.77  E-value=0.0051  Score=56.43  Aligned_cols=89  Identities=16%  Similarity=0.208  Sum_probs=59.7

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCc-EEEEEeCCChhhHHHHHHHHHhcCCCCCcc----CCHHHHhh----CCCCCE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGV-SVVCIADPHLQSRQQALKLANAFDWPLKVF----PGHQELLD----SGLCDV   77 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~-~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~----~~~~D~   77 (376)
                      -+|.|+|+|.+|...+...+..   +. ++++ +++++++++    +++++|.+ .++    .++.+.+.    ...+|+
T Consensus       168 ~~VlV~GaG~vG~~a~qla~~~---Ga~~Vi~-~~~~~~~~~----~~~~lGa~-~vi~~~~~~~~~~v~~~t~g~g~D~  238 (352)
T 3fpc_A          168 DTVCVIGIGPVGLMSVAGANHL---GAGRIFA-VGSRKHCCD----IALEYGAT-DIINYKNGDIVEQILKATDGKGVDK  238 (352)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTT---TCSSEEE-ECCCHHHHH----HHHHHTCC-EEECGGGSCHHHHHHHHTTTCCEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHc---CCcEEEE-ECCCHHHHH----HHHHhCCc-eEEcCCCcCHHHHHHHHcCCCCCCE
Confidence            4799999999999877666654   66 5665 677776544    44455654 222    23433322    235899


Q ss_pred             EEEeCCCCccHHHHHHHHcCCCCCeEEE
Q 017143           78 VVVSTPNMTHYQILMDIINHPKPHHVLV  105 (376)
Q Consensus        78 V~i~t~~~~h~~~~~~al~~~~g~~Vl~  105 (376)
                      |+.++......+.+.++++.+ |+-|++
T Consensus       239 v~d~~g~~~~~~~~~~~l~~~-G~~v~~  265 (352)
T 3fpc_A          239 VVIAGGDVHTFAQAVKMIKPG-SDIGNV  265 (352)
T ss_dssp             EEECSSCTTHHHHHHHHEEEE-EEEEEC
T ss_pred             EEECCCChHHHHHHHHHHhcC-CEEEEe
Confidence            999999878888888998743 555555

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=95.76  E-value=0.046  Score=49.43  Aligned_cols=35  Identities=23%  Similarity=0.248  Sum_probs=29.5

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL   43 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~   43 (376)
                      .-||.|||+|..|...+..|...   ++.-+.++|.+.
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~a---GVg~ItlvD~D~   68 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIAW---GVRKITFVDNGT   68 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT---TCCEEEEECCCB
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc---CCCEEEEecCCE
Confidence            46899999999999999888886   777677888865

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=95.73  E-value=0.0083  Score=53.11  Aligned_cols=74  Identities=19%  Similarity=0.181  Sum_probs=51.0

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCC--CCCccCCHHHHhhCCCCCEEEEeCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDW--PLKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      .-++.|+|+|.+|+..+..|...   ++.-+.|++|+++   ++++++++++-  ++.. .+++++.  .+.|+|+.+||
T Consensus       126 ~k~vlvlGaGg~g~aia~~L~~~---G~~~v~v~~R~~~---~a~~la~~~~~~~~~~~-~~~~~l~--~~aDiIInaTp  196 (281)
T 3o8q_A          126 GATILLIGAGGAARGVLKPLLDQ---QPASITVTNRTFA---KAEQLAELVAAYGEVKA-QAFEQLK--QSYDVIINSTS  196 (281)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTT---CCSEEEEEESSHH---HHHHHHHHHGGGSCEEE-EEGGGCC--SCEEEEEECSC
T ss_pred             CCEEEEECchHHHHHHHHHHHhc---CCCeEEEEECCHH---HHHHHHHHhhccCCeeE-eeHHHhc--CCCCEEEEcCc
Confidence            45899999999999988888875   6634558899987   56666665431  1112 2455554  35899999999


Q ss_pred             CCccH
Q 017143           84 NMTHY   88 (376)
Q Consensus        84 ~~~h~   88 (376)
                      ...+.
T Consensus       197 ~gm~~  201 (281)
T 3o8q_A          197 ASLDG  201 (281)
T ss_dssp             CCC--
T ss_pred             CCCCC
Confidence            87653

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=95.73  E-value=0.015  Score=52.62  Aligned_cols=73  Identities=14%  Similarity=0.121  Sum_probs=47.1

Q ss_pred             CceeEEEEe-CChhhHHHHHHhhhhcCCC-cEEEEEeCCChhhHHHHHHHHHhcCCC--CCc---cCCHHHHhhCCCCCE
Q 017143            5 DTVKYGIIG-MGMMGREHFINLHHLRSQG-VSVVCIADPHLQSRQQALKLANAFDWP--LKV---FPGHQELLDSGLCDV   77 (376)
Q Consensus         5 ~~~~v~iiG-~G~~g~~~~~~~~~~~~~~-~~~~~v~d~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~l~~~~~D~   77 (376)
                      +++||+||| +|++|...+..|...  +. .+|+ ++|++++ ...+.++... ..+  +..   .+++++++++  .|+
T Consensus         7 ~~mKI~ViGAaG~VG~~la~~L~~~--g~~~ev~-l~Di~~~-~~~~~dL~~~-~~~~~v~~~~~t~d~~~al~g--aDv   79 (326)
T 1smk_A            7 PGFKVAILGAAGGIGQPLAMLMKMN--PLVSVLH-LYDVVNA-PGVTADISHM-DTGAVVRGFLGQQQLEAALTG--MDL   79 (326)
T ss_dssp             -CEEEEEETTTSTTHHHHHHHHHHC--TTEEEEE-EEESSSH-HHHHHHHHTS-CSSCEEEEEESHHHHHHHHTT--CSE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhC--CCCCEEE-EEeCCCc-HhHHHHhhcc-cccceEEEEeCCCCHHHHcCC--CCE
Confidence            568999999 799999887777654  22 4554 5787765 3334444431 111  122   2367777876  899


Q ss_pred             EEEeCCC
Q 017143           78 VVVSTPN   84 (376)
Q Consensus        78 V~i~t~~   84 (376)
                      |+++.+.
T Consensus        80 Vi~~ag~   86 (326)
T 1smk_A           80 IIVPAGV   86 (326)
T ss_dssp             EEECCCC
T ss_pred             EEEcCCc
Confidence            9999864

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=95.73  E-value=0.018  Score=51.61  Aligned_cols=76  Identities=24%  Similarity=0.352  Sum_probs=42.7

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHH-HHHHHHhc--CCCCCcc-CCHHHHhhCCCCCEEEEeC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQ-ALKLANAF--DWPLKVF-PGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~--~~~~~~~-~~~~~~l~~~~~D~V~i~t   82 (376)
                      +||+|||+|.+|...+..++..  ..+.-+.++|+++++.+. +.++....  ..+.+.. ++++ .+++  .|+|+++.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~--g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~-a~~~--aDvVIi~~   75 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLR--GSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGHS-ELAD--AQVVILTA   75 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEECGG-GGTT--CSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECCHH-HhCC--CCEEEEcC
Confidence            4899999999999887777664  222235578999874431 22222111  1111122 4553 4544  89999999


Q ss_pred             CCCcc
Q 017143           83 PNMTH   87 (376)
Q Consensus        83 ~~~~h   87 (376)
                      +...+
T Consensus        76 ~~~~~   80 (304)
T 2v6b_A           76 GANQK   80 (304)
T ss_dssp             -----
T ss_pred             CCCCC
Confidence            75543

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=95.72  E-value=0.018  Score=53.19  Aligned_cols=71  Identities=15%  Similarity=0.156  Sum_probs=48.8

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC----CccCCHHHHhhCCCCCEEEEe
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL----KVFPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~D~V~i~   81 (376)
                      ..+|+|+|+|.+|...+..++..   +.+|+ ++|+++++   .+.+.+.++..+    ....++++++..  .|+|+.+
T Consensus       166 ~~~V~ViGaG~iG~~~a~~l~~~---Ga~V~-~~d~~~~~---~~~~~~~~g~~~~~~~~~~~~l~~~~~~--~DvVi~~  236 (369)
T 2eez_A          166 PASVVILGGGTVGTNAAKIALGM---GAQVT-ILDVNHKR---LQYLDDVFGGRVITLTATEANIKKSVQH--ADLLIGA  236 (369)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT---TCEEE-EEESCHHH---HHHHHHHTTTSEEEEECCHHHHHHHHHH--CSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC---CCEEE-EEECCHHH---HHHHHHhcCceEEEecCCHHHHHHHHhC--CCEEEEC
Confidence            47899999999999988888776   67755 67888874   334444455431    113456677764  8999999


Q ss_pred             CCCC
Q 017143           82 TPNM   85 (376)
Q Consensus        82 t~~~   85 (376)
                      ++..
T Consensus       237 ~g~~  240 (369)
T 2eez_A          237 VLVP  240 (369)
T ss_dssp             CC--
T ss_pred             CCCC
Confidence            8754

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=95.71  E-value=0.033  Score=52.95  Aligned_cols=89  Identities=11%  Similarity=0.048  Sum_probs=56.8

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-CCccCC--H----------------
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LKVFPG--H----------------   66 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~--~----------------   66 (376)
                      -+|.|+|+ |.+|...+..++..   +.+++++. +++++++.    ++++|.+ +-.+.+  +                
T Consensus       230 ~~VlV~GasG~vG~~avqlak~~---Ga~vi~~~-~~~~~~~~----~~~lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~  301 (456)
T 3krt_A          230 DNVLIWGASGGLGSYATQFALAG---GANPICVV-SSPQKAEI----CRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKR  301 (456)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHT---TCEEEEEE-SSHHHHHH----HHHHTCCEEEETTTTTCCSEEETTEECHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHc---CCeEEEEE-CCHHHHHH----HHhhCCcEEEecCcCcccccccccccchHHHHH
Confidence            47999998 99998877766654   78888765 56664443    3455654 111111  1                


Q ss_pred             --HHHhh---CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEE
Q 017143           67 --QELLD---SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLV  105 (376)
Q Consensus        67 --~~~l~---~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~  105 (376)
                        +++.+   ...+|+|+-++.. .....+..+++.+ |+-|++
T Consensus       302 ~~~~i~~~t~g~g~Dvvid~~G~-~~~~~~~~~l~~~-G~iv~~  343 (456)
T 3krt_A          302 FGKRIRELTGGEDIDIVFEHPGR-ETFGASVFVTRKG-GTITTC  343 (456)
T ss_dssp             HHHHHHHHHTSCCEEEEEECSCH-HHHHHHHHHEEEE-EEEEES
T ss_pred             HHHHHHHHhCCCCCcEEEEcCCc-hhHHHHHHHhhCC-cEEEEE
Confidence              22222   2369999999887 6677788888743 555555

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=95.69  E-value=0.016  Score=52.70  Aligned_cols=76  Identities=21%  Similarity=0.303  Sum_probs=49.4

Q ss_pred             CCceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHH-HHHHHHHh-cC-CCCCccCCHHHHhhCCCCCEEE
Q 017143            4 NDTVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQ-QALKLANA-FD-WPLKVFPGHQELLDSGLCDVVV   79 (376)
Q Consensus         4 ~~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~~~-~~-~~~~~~~~~~~~l~~~~~D~V~   79 (376)
                      |++.||+|||+ |.+|...+..+...  ....-+.++|+++++.+ .+.++..- +. ..+...+++.+.+++  .|+|+
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~--g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~d--ADvVv   81 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMM--RLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTD--AKYIV   81 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHT--TCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTT--EEEEE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhc--CCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCC--CCEEE
Confidence            44689999997 99999887766665  22222457899887442 23334322 11 123345788888876  89999


Q ss_pred             EeCC
Q 017143           80 VSTP   83 (376)
Q Consensus        80 i~t~   83 (376)
                      |+..
T Consensus        82 itaG   85 (343)
T 3fi9_A           82 SSGG   85 (343)
T ss_dssp             ECCC
T ss_pred             EccC
Confidence            9853

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=95.67  E-value=0.043  Score=46.56  Aligned_cols=88  Identities=13%  Similarity=0.087  Sum_probs=57.1

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHH-HHhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQ-ELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~D~V~i~t~~   84 (376)
                      ..+|.|||.|.+|..-+..|.+.   +.+|+ |++++...  ..++++++.++. -....++ +.|.  +.|+|+.+|.+
T Consensus        31 gk~VLVVGgG~va~~ka~~Ll~~---GA~Vt-Vvap~~~~--~l~~l~~~~~i~-~i~~~~~~~dL~--~adLVIaAT~d  101 (223)
T 3dfz_A           31 GRSVLVVGGGTIATRRIKGFLQE---GAAIT-VVAPTVSA--EINEWEAKGQLR-VKRKKVGEEDLL--NVFFIVVATND  101 (223)
T ss_dssp             TCCEEEECCSHHHHHHHHHHGGG---CCCEE-EECSSCCH--HHHHHHHTTSCE-EECSCCCGGGSS--SCSEEEECCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC---CCEEE-EECCCCCH--HHHHHHHcCCcE-EEECCCCHhHhC--CCCEEEECCCC
Confidence            46999999999999888888775   66766 44554432  466777665554 1112222 2343  48999999987


Q ss_pred             CccHHHHHHHHcCCCCCeEE
Q 017143           85 MTHYQILMDIINHPKPHHVL  104 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~~Vl  104 (376)
                      ..--..+.++.+  +|+.|-
T Consensus       102 ~~~N~~I~~~ak--~gi~VN  119 (223)
T 3dfz_A          102 QAVNKFVKQHIK--NDQLVN  119 (223)
T ss_dssp             THHHHHHHHHSC--TTCEEE
T ss_pred             HHHHHHHHHHHh--CCCEEE
Confidence            755555555556  566643

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=95.66  E-value=0.027  Score=51.68  Aligned_cols=88  Identities=17%  Similarity=0.225  Sum_probs=56.3

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC-----CHHHHhhCCCCCEEEEe
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP-----GHQELLDSGLCDVVVVS   81 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~D~V~i~   81 (376)
                      -+|.|+|+|.+|...+..++..   +.++++ +++++++++.+    +++|.+ .+++     ++.+.+. ..+|+|+.+
T Consensus       181 ~~VlV~GaG~vG~~~~qlak~~---Ga~Vi~-~~~~~~~~~~~----~~lGa~-~v~~~~~~~~~~~~~~-~~~D~vid~  250 (360)
T 1piw_A          181 KKVGIVGLGGIGSMGTLISKAM---GAETYV-ISRSSRKREDA----MKMGAD-HYIATLEEGDWGEKYF-DTFDLIVVC  250 (360)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH---TCEEEE-EESSSTTHHHH----HHHTCS-EEEEGGGTSCHHHHSC-SCEEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHHC---CCEEEE-EcCCHHHHHHH----HHcCCC-EEEcCcCchHHHHHhh-cCCCEEEEC
Confidence            4799999999999877766665   678665 45666654433    345654 2221     3333333 358999999


Q ss_pred             CCC--CccHHHHHHHHcCCCCCeEEE
Q 017143           82 TPN--MTHYQILMDIINHPKPHHVLV  105 (376)
Q Consensus        82 t~~--~~h~~~~~~al~~~~g~~Vl~  105 (376)
                      +..  ......+.++++.+ |+-|++
T Consensus       251 ~g~~~~~~~~~~~~~l~~~-G~iv~~  275 (360)
T 1piw_A          251 ASSLTDIDFNIMPKAMKVG-GRIVSI  275 (360)
T ss_dssp             CSCSTTCCTTTGGGGEEEE-EEEEEC
T ss_pred             CCCCcHHHHHHHHHHhcCC-CEEEEe
Confidence            987  55566677777632 444444

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=95.65  E-value=0.076  Score=49.55  Aligned_cols=130  Identities=16%  Similarity=0.150  Sum_probs=79.6

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCc-EEEEEeCCChhhHHHHHHHHHhcCCCCCcc----CCHHHHhh----CCCCCE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGV-SVVCIADPHLQSRQQALKLANAFDWPLKVF----PGHQELLD----SGLCDV   77 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~-~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~----~~~~D~   77 (376)
                      -+|.|+|+|.+|...+..++..   +. ++++ +++++++++.    ++++|.+ .++    .++.+.+.    ...+|+
T Consensus       215 ~~VlV~GaG~vG~~aiqlak~~---Ga~~Vi~-~~~~~~~~~~----~~~lGa~-~vi~~~~~~~~~~i~~~t~g~g~D~  285 (404)
T 3ip1_A          215 DNVVILGGGPIGLAAVAILKHA---GASKVIL-SEPSEVRRNL----AKELGAD-HVIDPTKENFVEAVLDYTNGLGAKL  285 (404)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCSEEEE-ECSCHHHHHH----HHHHTCS-EEECTTTSCHHHHHHHHTTTCCCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHHc---CCCEEEE-ECCCHHHHHH----HHHcCCC-EEEcCCCCCHHHHHHHHhCCCCCCE
Confidence            4799999999998877666654   77 6664 6777775444    4455654 222    23433332    235999


Q ss_pred             EEEeCCCC-ccHHHHHHHH----cCCCCCeEEEecC---CCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHH
Q 017143           78 VVVSTPNM-THYQILMDII----NHPKPHHVLVEKP---LCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQI  149 (376)
Q Consensus        78 V~i~t~~~-~h~~~~~~al----~~~~g~~Vl~EKP---~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~  149 (376)
                      |+-++... ...+.+.++|    +. .|+-|++--+   ...+..      ... .+ ++.+.-.+.......+..+.++
T Consensus       286 vid~~g~~~~~~~~~~~~l~~~~~~-~G~iv~~G~~~~~~~~~~~------~~~-~~-~~~i~g~~~~~~~~~~~~~~~l  356 (404)
T 3ip1_A          286 FLEATGVPQLVWPQIEEVIWRARGI-NATVAIVARADAKIPLTGE------VFQ-VR-RAQIVGSQGHSGHGTFPRVISL  356 (404)
T ss_dssp             EEECSSCHHHHHHHHHHHHHHCSCC-CCEEEECSCCCSCEEECHH------HHH-HT-TCEEEECCCCCSTTHHHHHHHH
T ss_pred             EEECCCCcHHHHHHHHHHHHhccCC-CcEEEEeCCCCCCCcccHH------HHh-cc-ceEEEEecCCCchHHHHHHHHH
Confidence            99999876 4566677777    64 3666666332   223322      233 33 4455444433334567888899


Q ss_pred             HHcCCC
Q 017143          150 VKSGSI  155 (376)
Q Consensus       150 i~~g~i  155 (376)
                      +++| +
T Consensus       357 l~~g-l  361 (404)
T 3ip1_A          357 MASG-M  361 (404)
T ss_dssp             HHTT-C
T ss_pred             HHcC-C
Confidence            9988 5

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=95.65  E-value=0.0032  Score=57.36  Aligned_cols=139  Identities=15%  Similarity=0.094  Sum_probs=79.6

Q ss_pred             eeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc-CCCCCccCCHH-HHhhCCCCCEEEEeCC
Q 017143            7 VKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF-DWPLKVFPGHQ-ELLDSGLCDVVVVSTP   83 (376)
Q Consensus         7 ~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~l~~~~~D~V~i~t~   83 (376)
                      +|||||| +|..|...+..|.++.=|.++++.+.+.+..    .+.+.  + +.+ ..+.+.+ +.+  .++|+|+.|+|
T Consensus         2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~a----G~~~~--~~~~~-~~~~~~~~~~~--~~~Dvvf~a~~   72 (344)
T 3tz6_A            2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQ----GRKLA--FRGQE-IEVEDAETADP--SGLDIALFSAG   72 (344)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTS----SCEEE--ETTEE-EEEEETTTSCC--TTCSEEEECSC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccC----CCcee--ecCCc-eEEEeCCHHHh--ccCCEEEECCC
Confidence            7999999 6999999888777642257888888765432    11111  1 111 1111111 122  35899999999


Q ss_pred             CCccHHHHHHHHcCCCCCeEEEecCCCC--C------HHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCC
Q 017143           84 NMTHYQILMDIINHPKPHHVLVEKPLCT--T------VADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSI  155 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~EKP~a~--~------~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~i  155 (376)
                      ...+.+.+.++++  +|.-|+ .-+.+.  +      +.|..+= +.. +..+..+..+.++.-......++-+.+.+.|
T Consensus        73 ~~~s~~~a~~~~~--~G~~vI-D~Sa~~R~~~~~p~~vpevN~~-~~i-~~~~~~iIanpgC~tt~~~l~l~pL~~~~~i  147 (344)
T 3tz6_A           73 SAMSKVQAPRFAA--AGVTVI-DNSSAWRKDPDVPLVVSEVNFE-RDA-HRRPKGIIANPNCTTMAAMPVLKVLHDEARL  147 (344)
T ss_dssp             HHHHHHHHHHHHH--TTCEEE-ECSSTTTTCTTSCBCCTTTSHH-HHT-TCCTTSEEECCCHHHHHHHHHHHHHHHHHCE
T ss_pred             hHHHHHHHHHHHh--CCCEEE-ECCCccccCCCccEEEccCCCH-HHh-hhcCCCEEECCCcHHHHHHHHHHHHHHhCCC
Confidence            9999999999999  777544 332211  1      1111100 111 1111135555555556667777777776555


Q ss_pred             CceE
Q 017143          156 GQVK  159 (376)
Q Consensus       156 G~i~  159 (376)
                      .++.
T Consensus       148 ~~i~  151 (344)
T 3tz6_A          148 VRLV  151 (344)
T ss_dssp             EEEE
T ss_pred             ceEE
Confidence            4443

>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A

Probab=95.64  E-value=0.032  Score=50.15  Aligned_cols=78  Identities=19%  Similarity=0.188  Sum_probs=54.1

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH--------HHHHHHHHhcCCCCCc---cCC--HHHHhh
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSR--------QQALKLANAFDWPLKV---FPG--HQELLD   71 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~--------~~~~~~~~~~~~~~~~---~~~--~~~~l~   71 (376)
                      +++||+++|++.++...+.+|.+.   +.++++|+..-+.+.        ...+++|+++|+|+..   +.+  +.+.|+
T Consensus         2 ~~mrIvf~Gt~~fa~~~L~~L~~~---~~~i~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~l~   78 (314)
T 1fmt_A            2 ESLRIIFAGTPDFAARHLDALLSS---GHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSLRPQENQQLVA   78 (314)
T ss_dssp             CCCEEEEEECSHHHHHHHHHHHHT---TCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCSCSCSHHHHHHHH
T ss_pred             CCCEEEEEecCHHHHHHHHHHHHC---CCcEEEEEeCCCCccccccccCcCHHHHHHHHcCCcEEecCCCCCHHHHHHHH
Confidence            469999999999888888877764   689999987522111        1467889999998311   222  234455


Q ss_pred             CCCCCEEEEeCCCC
Q 017143           72 SGLCDVVVVSTPNM   85 (376)
Q Consensus        72 ~~~~D~V~i~t~~~   85 (376)
                      ..++|+++++....
T Consensus        79 ~~~~Dliv~~~y~~   92 (314)
T 1fmt_A           79 ELQADVMVVVAYGL   92 (314)
T ss_dssp             HTTCSEEEEESCCS
T ss_pred             hcCCCEEEEeeccc
Confidence            56799999887644

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=95.64  E-value=0.0071  Score=53.37  Aligned_cols=73  Identities=16%  Similarity=0.188  Sum_probs=48.3

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCC--CCCccCCHHHHhhCCCCCEEEEeCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDW--PLKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      ..++.|+|+|.+|+..+..|...   +.+|+ |++|+.+   ++++++++++-  .+. ..+++++.+ .+.|+|+.+||
T Consensus       119 ~~~vlvlGaGg~g~a~a~~L~~~---G~~v~-v~~R~~~---~a~~l~~~~~~~~~~~-~~~~~~~~~-~~~DivIn~t~  189 (272)
T 1p77_A          119 NQHVLILGAGGATKGVLLPLLQA---QQNIV-LANRTFS---KTKELAERFQPYGNIQ-AVSMDSIPL-QTYDLVINATS  189 (272)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHT---TCEEE-EEESSHH---HHHHHHHHHGGGSCEE-EEEGGGCCC-SCCSEEEECCC
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC---CCEEE-EEECCHH---HHHHHHHHccccCCeE-EeeHHHhcc-CCCCEEEECCC
Confidence            35899999999999888888876   46654 7899987   56666655431  111 123443322 25899999999


Q ss_pred             CCcc
Q 017143           84 NMTH   87 (376)
Q Consensus        84 ~~~h   87 (376)
                      ...+
T Consensus       190 ~~~~  193 (272)
T 1p77_A          190 AGLS  193 (272)
T ss_dssp             C---
T ss_pred             CCCC
Confidence            8765

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=95.64  E-value=0.025  Score=50.87  Aligned_cols=74  Identities=18%  Similarity=0.191  Sum_probs=46.2

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHH-HHHHHHHh---cCCCCCc--cCCHHHHhhCCCCCEEEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQ-QALKLANA---FDWPLKV--FPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~~~---~~~~~~~--~~~~~~~l~~~~~D~V~i   80 (376)
                      |||+|||+|.+|...+..++..  +-+.-+.++|+++++.+ .+.++...   .+.+++.  +++++ .+++  .|+|+|
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~--~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~-a~~~--aDvVii   75 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQ--DVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYG-PTED--SDVCII   75 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH--TCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSG-GGTT--CSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHH-HhCC--CCEEEE
Confidence            5899999999999888888776  33434558899987542 22233221   1222223  34544 4444  899999


Q ss_pred             eCCCC
Q 017143           81 STPNM   85 (376)
Q Consensus        81 ~t~~~   85 (376)
                      +.+..
T Consensus        76 ~ag~~   80 (314)
T 3nep_X           76 TAGLP   80 (314)
T ss_dssp             CCCC-
T ss_pred             CCCCC
Confidence            97643

>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}

Probab=95.63  E-value=0.022  Score=48.27  Aligned_cols=77  Identities=17%  Similarity=0.182  Sum_probs=50.2

Q ss_pred             eeEEEE--eCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCc-----cCC-------HHHHhhC
Q 017143            7 VKYGII--GMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKV-----FPG-------HQELLDS   72 (376)
Q Consensus         7 ~~v~ii--G~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~-----~~~-------~~~~l~~   72 (376)
                      +||+|+  |.|......+.++.+.. -.+++++|+...++.  ...+.|+++|+|+..     +.+       +.+.|+.
T Consensus         2 ~rI~vl~SG~g~~~~~~l~~l~~~~-~~~~i~~Vvs~~~~~--~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~   78 (216)
T 2ywr_A            2 LKIGVLVSGRGSNLQAIIDAIESGK-VNASIELVISDNPKA--YAIERCKKHNVECKVIQRKEFPSKKEFEERMALELKK   78 (216)
T ss_dssp             EEEEEEECSCCHHHHHHHHHHHTTS-SCEEEEEEEESCTTC--HHHHHHHHHTCCEEECCGGGSSSHHHHHHHHHHHHHH
T ss_pred             CEEEEEEeCCcHHHHHHHHHHHhCC-CCCeEEEEEeCCCCh--HHHHHHHHcCCCEEEeCcccccchhhhhHHHHHHHHh
Confidence            689999  88877777777666531 134888888654432  467788899998221     222       2244555


Q ss_pred             CCCCEEEEeCCCCc
Q 017143           73 GLCDVVVVSTPNMT   86 (376)
Q Consensus        73 ~~~D~V~i~t~~~~   86 (376)
                      .++|+++++.....
T Consensus        79 ~~~Dliv~a~y~~i   92 (216)
T 2ywr_A           79 KGVELVVLAGFMRI   92 (216)
T ss_dssp             TTCCEEEESSCCSC
T ss_pred             cCCCEEEEeCchhh
Confidence            67999998876443

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=95.63  E-value=0.021  Score=54.55  Aligned_cols=74  Identities=12%  Similarity=0.247  Sum_probs=49.7

Q ss_pred             eeEEEEeCChhh--HHHHHHhhhhcC---CCcEEEEEeCCChhhHHHHHH----HHHhcCCC--CCccCCHHHHhhCCCC
Q 017143            7 VKYGIIGMGMMG--REHFINLHHLRS---QGVSVVCIADPHLQSRQQALK----LANAFDWP--LKVFPGHQELLDSGLC   75 (376)
Q Consensus         7 ~~v~iiG~G~~g--~~~~~~~~~~~~---~~~~~~~v~d~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~l~~~~~   75 (376)
                      |||+|||.|+.|  ...+..++....   ...+ ++++|+++++++....    ..+..|.+  +..++|++++|+.  .
T Consensus         1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~e-i~L~Di~~~rl~~~~~~~~~~~~~~~~~~~i~~t~d~~eAl~g--A   77 (477)
T 3u95_A            1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTH-IYLMDVHERRLNASYILARKYVEELNSPVKVVKTESLDEAIEG--A   77 (477)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCE-EEEECSCHHHHHHHHHHHHHHHHHHTCCCEEEEESCHHHHHTT--C
T ss_pred             CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCE-EEEECCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHhCC--C
Confidence            689999999865  345544444311   1234 5589999987754333    33445655  4567899999987  8


Q ss_pred             CEEEEeCC
Q 017143           76 DVVVVSTP   83 (376)
Q Consensus        76 D~V~i~t~   83 (376)
                      |.|+++.-
T Consensus        78 D~Vi~~~g   85 (477)
T 3u95_A           78 DFIINTAY   85 (477)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECcc
Confidence            99999863

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=95.61  E-value=0.12  Score=47.02  Aligned_cols=129  Identities=19%  Similarity=0.240  Sum_probs=79.2

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCc--cC---C-HHHHhh------CCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKV--FP---G-HQELLD------SGL   74 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~--~~---~-~~~~l~------~~~   74 (376)
                      -+|.|+|+|.+|...+..++..   +.+++ ++++++++++    +++++|.+ .+  ++   + .+++.+      ...
T Consensus       170 ~~VlV~GaG~vG~~a~qla~~~---Ga~Vi-~~~~~~~~~~----~~~~lGa~-~~~~~~~~~~~~~~i~~~~~~~~g~g  240 (352)
T 1e3j_A          170 TTVLVIGAGPIGLVSVLAAKAY---GAFVV-CTARSPRRLE----VAKNCGAD-VTLVVDPAKEEESSIIERIRSAIGDL  240 (352)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCEEE-EEESCHHHHH----HHHHTTCS-EEEECCTTTSCHHHHHHHHHHHSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHc---CCEEE-EEcCCHHHHH----HHHHhCCC-EEEcCcccccHHHHHHHHhccccCCC
Confidence            4799999999998877666554   77855 4667776433    34466754 22  22   2 233332      235


Q ss_pred             CCEEEEeCCCCccHHHHHHHHcCCCCCeEEEec---CCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHH
Q 017143           75 CDVVVVSTPNMTHYQILMDIINHPKPHHVLVEK---PLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVK  151 (376)
Q Consensus        75 ~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EK---P~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~  151 (376)
                      +|+|+-++........+.++++.+ |+-|++-.   +...+.      .... .+ ++.+.-.  .+|...+..+.++++
T Consensus       241 ~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~------~~~~-~~-~~~i~g~--~~~~~~~~~~~~l~~  309 (352)
T 1e3j_A          241 PNVTIDCSGNEKCITIGINITRTG-GTLMLVGMGSQMVTVPL------VNAC-AR-EIDIKSV--FRYCNDYPIALEMVA  309 (352)
T ss_dssp             CSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCSSCCCCCH------HHHH-TT-TCEEEEC--CSCSSCHHHHHHHHH
T ss_pred             CCEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCCCCccccH------HHHH-hc-CcEEEEe--ccchHHHHHHHHHHH
Confidence            999999998766677788888743 65555532   233332      2233 33 4444333  234556888889999


Q ss_pred             cCCC
Q 017143          152 SGSI  155 (376)
Q Consensus       152 ~g~i  155 (376)
                      +|++
T Consensus       310 ~g~i  313 (352)
T 1e3j_A          310 SGRC  313 (352)
T ss_dssp             TTSC
T ss_pred             cCCC
Confidence            8875

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=95.61  E-value=0.071  Score=48.42  Aligned_cols=133  Identities=18%  Similarity=0.212  Sum_probs=78.1

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc----CCHHHHhhC--CCCCEEEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF----PGHQELLDS--GLCDVVVV   80 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~--~~~D~V~i   80 (376)
                      -+|.|+|+|.+|...+..++..   +.++++ +++++++++.    ++++|.. ..+    .++.+.+.+  ..+|+|+.
T Consensus       166 ~~VlV~GaG~vG~~~~~~a~~~---Ga~Vi~-~~~~~~~~~~----~~~lGa~-~~~d~~~~~~~~~~~~~~~~~d~vid  236 (339)
T 1rjw_A          166 EWVAIYGIGGLGHVAVQYAKAM---GLNVVA-VDIGDEKLEL----AKELGAD-LVVNPLKEDAAKFMKEKVGGVHAAVV  236 (339)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT---TCEEEE-ECSCHHHHHH----HHHTTCS-EEECTTTSCHHHHHHHHHSSEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHc---CCEEEE-EeCCHHHHHH----HHHCCCC-EEecCCCccHHHHHHHHhCCCCEEEE
Confidence            4799999999999877766665   678775 5777774443    3456654 222    233333321  35899999


Q ss_pred             eCCCCccHHHHHHHHcCCCCCeEEEecCC---CCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCc
Q 017143           81 STPNMTHYQILMDIINHPKPHHVLVEKPL---CTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQ  157 (376)
Q Consensus        81 ~t~~~~h~~~~~~al~~~~g~~Vl~EKP~---a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~  157 (376)
                      ++......+.+.++++. .|+-|++--+.   ..+.      .... .+ ++.+. +........+..+.+++++|.+-.
T Consensus       237 ~~g~~~~~~~~~~~l~~-~G~~v~~g~~~~~~~~~~------~~~~-~~-~~~i~-g~~~~~~~~~~~~~~l~~~g~l~~  306 (339)
T 1rjw_A          237 TAVSKPAFQSAYNSIRR-GGACVLVGLPPEEMPIPI------FDTV-LN-GIKII-GSIVGTRKDLQEALQFAAEGKVKT  306 (339)
T ss_dssp             SSCCHHHHHHHHHHEEE-EEEEEECCCCSSEEEEEH------HHHH-HT-TCEEE-ECCSCCHHHHHHHHHHHHTTSCCC
T ss_pred             CCCCHHHHHHHHHHhhc-CCEEEEecccCCCCccCH------HHHH-hC-CcEEE-EeccCCHHHHHHHHHHHHcCCCCc
Confidence            99875666777788874 25555553322   1222      1222 22 33433 322222345777888888887754


Q ss_pred             e
Q 017143          158 V  158 (376)
Q Consensus       158 i  158 (376)
                      +
T Consensus       307 ~  307 (339)
T 1rjw_A          307 I  307 (339)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=95.60  E-value=0.12  Score=47.27  Aligned_cols=129  Identities=20%  Similarity=0.165  Sum_probs=78.7

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCc-EEEEEeCCChhhHHHHHHHHHhcCCCCCcc--C--CHHH----Hhh--CCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGV-SVVCIADPHLQSRQQALKLANAFDWPLKVF--P--GHQE----LLD--SGLC   75 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~-~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~----~l~--~~~~   75 (376)
                      -+|.|+|+|.+|...+..++..   +. ++++ ++++++++    ++++++|.+ .++  +  +.++    +.+  ...+
T Consensus       173 ~~VlV~GaG~vG~~aiqlak~~---Ga~~Vi~-~~~~~~~~----~~a~~lGa~-~vi~~~~~~~~~~~~~i~~~~~~g~  243 (356)
T 1pl8_A          173 HKVLVCGAGPIGMVTLLVAKAM---GAAQVVV-TDLSATRL----SKAKEIGAD-LVLQISKESPQEIARKVEGQLGCKP  243 (356)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCSEEEE-EESCHHHH----HHHHHTTCS-EEEECSSCCHHHHHHHHHHHHTSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHc---CCCEEEE-ECCCHHHH----HHHHHhCCC-EEEcCcccccchHHHHHHHHhCCCC
Confidence            4799999999999877666654   67 6665 45666643    345567765 222  2  1122    222  1359


Q ss_pred             CEEEEeCCCCccHHHHHHHHcCCCCCeEEEe---cCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHc
Q 017143           76 DVVVVSTPNMTHYQILMDIINHPKPHHVLVE---KPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKS  152 (376)
Q Consensus        76 D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~E---KP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~  152 (376)
                      |+|+.++........+.++|+.+ |+-|++-   .+...+..      ... .+ ++.+.-.+  ++...+..+.+++++
T Consensus       244 D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~------~~~-~~-~~~i~g~~--~~~~~~~~~~~l~~~  312 (356)
T 1pl8_A          244 EVTIECTGAEASIQAGIYATRSG-GTLVLVGLGSEMTTVPLL------HAA-IR-EVDIKGVF--RYCNTWPVAISMLAS  312 (356)
T ss_dssp             SEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCCSCCCCCHH------HHH-HT-TCEEEECC--SCSSCHHHHHHHHHT
T ss_pred             CEEEECCCChHHHHHHHHHhcCC-CEEEEEecCCCCCccCHH------HHH-hc-ceEEEEec--ccHHHHHHHHHHHHc
Confidence            99999998766677788888843 6555543   23333432      233 33 44443332  345567888899998


Q ss_pred             CCC
Q 017143          153 GSI  155 (376)
Q Consensus       153 g~i  155 (376)
                      |++
T Consensus       313 g~i  315 (356)
T 1pl8_A          313 KSV  315 (356)
T ss_dssp             TSC
T ss_pred             CCC
Confidence            875

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=95.55  E-value=0.022  Score=51.39  Aligned_cols=77  Identities=19%  Similarity=0.260  Sum_probs=48.1

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHH-HHHHHHHhcC--CCCCccCCHHHHhhCCCCCEEEE
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQ-QALKLANAFD--WPLKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      +...||+|||+|.+|...+..+...  +-+.-+.++|+++++++ .+.++..-..  -+++.+++..+.+++  .|+|+|
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~--~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~--aDiVvi   82 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQ--GIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKD--ADLVVI   82 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTT--CSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhC--CCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcC--CCEEEE
Confidence            3568999999999999888888776  44444558999887432 2223322111  112334333344554  899999


Q ss_pred             eCCC
Q 017143           81 STPN   84 (376)
Q Consensus        81 ~t~~   84 (376)
                      +...
T Consensus        83 ~ag~   86 (326)
T 3vku_A           83 TAGA   86 (326)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            8753

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=95.55  E-value=0.043  Score=51.12  Aligned_cols=63  Identities=17%  Similarity=0.258  Sum_probs=47.4

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t   82 (376)
                      .+++|+|+|.+|+..+..++..   +.+|+ ++|+++.+..   + +...|+.   +.++++++..  .|+|+.|+
T Consensus       221 ktV~ViG~G~IGk~vA~~Lra~---Ga~Vi-v~D~dp~ra~---~-A~~~G~~---v~~Leeal~~--ADIVi~at  283 (435)
T 3gvp_A          221 KQVVVCGYGEVGKGCCAALKAM---GSIVY-VTEIDPICAL---Q-ACMDGFR---LVKLNEVIRQ--VDIVITCT  283 (435)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCEEE-EECSCHHHHH---H-HHHTTCE---ECCHHHHTTT--CSEEEECS
T ss_pred             CEEEEEeeCHHHHHHHHHHHHC---CCEEE-EEeCChhhhH---H-HHHcCCE---eccHHHHHhc--CCEEEECC
Confidence            5899999999999988888776   77855 6899886322   2 2344543   4579999986  89999974

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=95.54  E-value=0.052  Score=48.79  Aligned_cols=72  Identities=24%  Similarity=0.320  Sum_probs=44.1

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCc-EEEEEeCCCh--hhHH-HHHHHHHh-----cCCCCCccCCHHHHhhCCCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGV-SVVCIADPHL--QSRQ-QALKLANA-----FDWPLKVFPGHQELLDSGLC   75 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~-~~~~v~d~~~--~~~~-~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~   75 (376)
                      +..||+|||+|.+|...+..++..   +. +| .++|+++  ++.+ .+.++...     ....+...+++++ +++  .
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~---g~~~v-~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a-~~~--a   79 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQK---ELADV-VLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYAD-TAD--S   79 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT---TCCEE-EEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGG-GTT--C
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC---CCCeE-EEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHH-hCC--C
Confidence            457999999999999888777765   45 54 4789983  3221 12222211     1111223456654 444  8


Q ss_pred             CEEEEeCC
Q 017143           76 DVVVVSTP   83 (376)
Q Consensus        76 D~V~i~t~   83 (376)
                      |+|+++..
T Consensus        80 DvVIiaag   87 (315)
T 3tl2_A           80 DVVVITAG   87 (315)
T ss_dssp             SEEEECCS
T ss_pred             CEEEEeCC
Confidence            99999974

>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}

Probab=95.53  E-value=0.036  Score=46.78  Aligned_cols=86  Identities=12%  Similarity=0.051  Sum_probs=51.3

Q ss_pred             eeEEEE--eCChhhHHHHHHhhhhcCC-CcEEEEEeCCChhhHHHHHHHHHhcCCCCCc-----cCC-------HHHHhh
Q 017143            7 VKYGII--GMGMMGREHFINLHHLRSQ-GVSVVCIADPHLQSRQQALKLANAFDWPLKV-----FPG-------HQELLD   71 (376)
Q Consensus         7 ~~v~ii--G~G~~g~~~~~~~~~~~~~-~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~-----~~~-------~~~~l~   71 (376)
                      +||+|+  |.|......+.++.+.  . +.++++|+...++.  ...++|+++|+|+..     |.+       +.+.|+
T Consensus         4 ~ki~vl~sG~g~~~~~~l~~l~~~--~l~~~I~~Vit~~~~~--~v~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~   79 (212)
T 3av3_A            4 KRLAVFASGSGTNFQAIVDAAKRG--DLPARVALLVCDRPGA--KVIERAARENVPAFVFSPKDYPSKAAFESEILRELK   79 (212)
T ss_dssp             EEEEEECCSSCHHHHHHHHHHHTT--CCCEEEEEEEESSTTC--HHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHH
T ss_pred             cEEEEEEECCcHHHHHHHHHHHhC--CCCCeEEEEEeCCCCc--HHHHHHHHcCCCEEEeCcccccchhhhHHHHHHHHH
Confidence            566666  6666655666665543  2 68998888654432  567889999998321     111       224455


Q ss_pred             CCCCCEEEEeCCCCccHHHHHHHHc
Q 017143           72 SGLCDVVVVSTPNMTHYQILMDIIN   96 (376)
Q Consensus        72 ~~~~D~V~i~t~~~~h~~~~~~al~   96 (376)
                      ..++|+++++.....=.+-++.+.+
T Consensus        80 ~~~~Dliv~a~y~~il~~~~l~~~~  104 (212)
T 3av3_A           80 GRQIDWIALAGYMRLIGPTLLSAYE  104 (212)
T ss_dssp             HTTCCEEEESSCCSCCCHHHHHHTT
T ss_pred             hcCCCEEEEchhhhhCCHHHHhhhc
Confidence            5679999888764433333333333

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=95.51  E-value=0.13  Score=41.49  Aligned_cols=75  Identities=20%  Similarity=0.181  Sum_probs=48.1

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC--CCccCCHHHHhhC--CCCCEEEEe
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP--LKVFPGHQELLDS--GLCDVVVVS   81 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~--~~~D~V~i~   81 (376)
                      ..+|.-||||. |..........  ++.++++ +|.+++..+.+++..++.+++  +....+..+.+..  ..+|+|++.
T Consensus        26 ~~~vldiG~G~-G~~~~~l~~~~--~~~~v~~-vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~  101 (178)
T 3hm2_A           26 HETLWDIGGGS-GSIAIEWLRST--PQTTAVC-FEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIG  101 (178)
T ss_dssp             TEEEEEESTTT-THHHHHHHTTS--SSEEEEE-ECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEEC
T ss_pred             CCeEEEeCCCC-CHHHHHHHHHC--CCCeEEE-EeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEEC
Confidence            46899999995 65444444444  6788775 699998777777777666654  2122344334443  568998865


Q ss_pred             CCC
Q 017143           82 TPN   84 (376)
Q Consensus        82 t~~   84 (376)
                      .+-
T Consensus       102 ~~~  104 (178)
T 3hm2_A          102 GGL  104 (178)
T ss_dssp             C-T
T ss_pred             Ccc
Confidence            543

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=95.47  E-value=0.039  Score=48.90  Aligned_cols=36  Identities=22%  Similarity=0.281  Sum_probs=29.9

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL   43 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~   43 (376)
                      +.-||.|||+|..|...+..|...   ++.-+.++|.|.
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~a---GVG~i~lvD~D~   70 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRC---GIGKLLLFDYDK   70 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHH---TCSEEEEECCCB
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHc---CCCEEEEECCCc
Confidence            347999999999999998888886   666666888876

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=95.43  E-value=0.049  Score=50.17  Aligned_cols=132  Identities=13%  Similarity=0.083  Sum_probs=78.9

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCc-EEEEEeCCChhhHHHHHHHHHhcCCCCCc--c--CCHHHHhhC---CCCCEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGV-SVVCIADPHLQSRQQALKLANAFDWPLKV--F--PGHQELLDS---GLCDVV   78 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~-~~~~v~d~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~l~~---~~~D~V   78 (376)
                      -+|.|+|+|.+|...+..++..   +. ++++ +++++++++.    ++++|.+ .+  +  .++.+.+.+   ..+|+|
T Consensus       192 ~~VlV~GaG~vG~~a~qlak~~---Ga~~Vi~-~~~~~~~~~~----a~~lGa~-~vi~~~~~~~~~~~~~~~~gg~D~v  262 (371)
T 1f8f_A          192 SSFVTWGAGAVGLSALLAAKVC---GASIIIA-VDIVESRLEL----AKQLGAT-HVINSKTQDPVAAIKEITDGGVNFA  262 (371)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHH---TCSEEEE-EESCHHHHHH----HHHHTCS-EEEETTTSCHHHHHHHHTTSCEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHc---CCCeEEE-ECCCHHHHHH----HHHcCCC-EEecCCccCHHHHHHHhcCCCCcEE
Confidence            4799999999999877766665   66 5554 5677765443    3455654 22  2  234333321   258999


Q ss_pred             EEeCCCCccHHHHHHHHcCCCCCeEEEec-----CCCCCHHHHHHHHHHHHhCCCeEEEEeecccc--CHHHHHHHHHHH
Q 017143           79 VVSTPNMTHYQILMDIINHPKPHHVLVEK-----PLCTTVADCKKVVDAARKRPDILVQVGLEYRY--MPPVAKLIQIVK  151 (376)
Q Consensus        79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~EK-----P~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~--~p~~~~~k~~i~  151 (376)
                      +-++......+.+.++++.+ |+-|++--     |+..+..      ... .+ ++.+.-.+...+  ...+..+.++++
T Consensus       263 id~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~------~~~-~~-~~~i~g~~~~~~~~~~~~~~~~~l~~  333 (371)
T 1f8f_A          263 LESTGSPEILKQGVDALGIL-GKIAVVGAPQLGTTAQFDVN------DLL-LG-GKTILGVVEGSGSPKKFIPELVRLYQ  333 (371)
T ss_dssp             EECSCCHHHHHHHHHTEEEE-EEEEECCCCSTTCCCCCCHH------HHH-HT-TCEEEECSGGGSCHHHHHHHHHHHHH
T ss_pred             EECCCCHHHHHHHHHHHhcC-CEEEEeCCCCCCCccccCHH------HHH-hC-CCEEEEeCCCCCchHHHHHHHHHHHH
Confidence            99998766677788888743 66666532     2333432      223 23 444443322222  245778888999


Q ss_pred             cCCCC
Q 017143          152 SGSIG  156 (376)
Q Consensus       152 ~g~iG  156 (376)
                      +|+|-
T Consensus       334 ~g~l~  338 (371)
T 1f8f_A          334 QGKFP  338 (371)
T ss_dssp             TTSCC
T ss_pred             cCCCC
Confidence            88764

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=95.42  E-value=0.044  Score=52.03  Aligned_cols=64  Identities=22%  Similarity=0.251  Sum_probs=48.7

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t   82 (376)
                      ..+|+|||+|.+|+..+..++..   +.+|+ ++|+++.+   +.+ +...|+.   +.++++++..  .|+|++++
T Consensus       257 GktVgIIG~G~IG~~vA~~l~~~---G~~Vi-v~d~~~~~---~~~-a~~~g~~---~~~l~ell~~--aDiVi~~~  320 (479)
T 1v8b_A          257 GKIVVICGYGDVGKGCASSMKGL---GARVY-ITEIDPIC---AIQ-AVMEGFN---VVTLDEIVDK--GDFFITCT  320 (479)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHH---TCEEE-EECSCHHH---HHH-HHTTTCE---ECCHHHHTTT--CSEEEECC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhC---cCEEE-EEeCChhh---HHH-HHHcCCE---ecCHHHHHhc--CCEEEECC
Confidence            46899999999999998888887   78866 68998873   222 2234543   3589999986  89999995

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=95.42  E-value=0.046  Score=48.56  Aligned_cols=72  Identities=19%  Similarity=0.241  Sum_probs=46.6

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH-HHHHHHHH---hcCCC--CCccCCHHHHhhCCCCCEEEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSR-QQALKLAN---AFDWP--LKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~---~~~~~--~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      |||+|||+|.+|......+...  +-+.-+.++|.++++. ..+.++..   -.+..  +...+++++ +++  .|+|+|
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~--~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~-~~~--aDvVvi   75 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLN--LDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSL-LKG--SEIIVV   75 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH--SCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGG-GTT--CSEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhC--CCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHH-hCC--CCEEEE
Confidence            6899999999999777666665  5555566899988643 23344432   12221  123457765 444  799999


Q ss_pred             eCC
Q 017143           81 STP   83 (376)
Q Consensus        81 ~t~   83 (376)
                      +.-
T Consensus        76 tAG   78 (294)
T 2x0j_A           76 TAG   78 (294)
T ss_dssp             CCC
T ss_pred             ecC
Confidence            875

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=95.35  E-value=0.064  Score=52.18  Aligned_cols=93  Identities=13%  Similarity=0.084  Sum_probs=58.8

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh-------------------hhHHHHHHHHHhcC--CCCCccC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL-------------------QSRQQALKLANAFD--WPLKVFP   64 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~-------------------~~~~~~~~~~~~~~--~~~~~~~   64 (376)
                      .-||.|||+|..|...+..|+..   ++.-+.++|.|.                   .+.+.+++..++.+  +.+..+.
T Consensus       326 ~arVLIVGaGGLGs~vA~~La~a---GVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iNP~V~v~~~~  402 (615)
T 4gsl_A          326 NTKVLLLGAGTLGCYVSRALIAW---GVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVK  402 (615)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT---TCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc---CCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhCCCcEEEEee
Confidence            46999999999999999888886   777777888875                   22232322222222  1111221


Q ss_pred             ---------------------CHHHHhhCCCCCEEEEeCCCC-ccHHHHHHHHcCCCCCeEEE
Q 017143           65 ---------------------GHQELLDSGLCDVVVVSTPNM-THYQILMDIINHPKPHHVLV  105 (376)
Q Consensus        65 ---------------------~~~~~l~~~~~D~V~i~t~~~-~h~~~~~~al~~~~g~~Vl~  105 (376)
                                           +.++++..  .|+|+.|+-+. .+..+...|.+  .|++++.
T Consensus       403 ~~Ipm~gh~v~~e~~~~l~~~~l~~ll~~--~DlVvd~tDn~~tR~~ln~~c~~--~~~PlI~  461 (615)
T 4gsl_A          403 LSIPMIGHKLVNEEAQHKDFDRLRALIKE--HDIIFLLVDSRESRWLPSLLSNI--ENKTVIN  461 (615)
T ss_dssp             CCCCCTTCCCSCHHHHHHHHHHHHHHHHH--CSEEEECCSSGGGTHHHHHHHHH--TTCEEEE
T ss_pred             ccccccCccccchhhhcCCHHHHHHHhhc--CCEEEecCCCHHHHHHHHHHHHH--cCCeEEE
Confidence                                 23455554  78888888774 55556666677  6776654

>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}

Probab=95.34  E-value=0.048  Score=48.94  Aligned_cols=77  Identities=17%  Similarity=0.144  Sum_probs=54.1

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH--------HHHHHHHHhcCCCCC---ccCC--HHHHhhC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSR--------QQALKLANAFDWPLK---VFPG--HQELLDS   72 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~--------~~~~~~~~~~~~~~~---~~~~--~~~~l~~   72 (376)
                      ++||.++|+..++...+..|.+.   +.++++|+..-+.+.        ...+++|+++|+|+.   .+.+  ..+.|+.
T Consensus         2 ~mrivf~Gtp~fa~~~L~~L~~~---~~~v~~Vvt~pd~~~grg~~l~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~l~~   78 (314)
T 3tqq_A            2 SLKIVFAGTPQFAVPTLRALIDS---SHRVLAVYTQPDRPSGRGQKIMESPVKEIARQNEIPIIQPFSLRDEVEQEKLIA   78 (314)
T ss_dssp             CCEEEEEECSGGGHHHHHHHHHS---SSEEEEEECCCC----------CCHHHHHHHHTTCCEECCSCSSSHHHHHHHHT
T ss_pred             CcEEEEECCCHHHHHHHHHHHHC---CCeEEEEEeCCCCccccCCccCCCHHHHHHHHcCCCEECcccCCCHHHHHHHHh
Confidence            48999999999998888888764   689999997422211        134688899999821   1222  3356667


Q ss_pred             CCCCEEEEeCCCC
Q 017143           73 GLCDVVVVSTPNM   85 (376)
Q Consensus        73 ~~~D~V~i~t~~~   85 (376)
                      .++|+++++.-..
T Consensus        79 ~~~Dliv~~~~~~   91 (314)
T 3tqq_A           79 MNADVMVVVAYGL   91 (314)
T ss_dssp             TCCSEEEEESCCS
T ss_pred             cCCCEEEEcCccc
Confidence            7899999887643

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=95.34  E-value=0.066  Score=48.77  Aligned_cols=89  Identities=15%  Similarity=0.151  Sum_probs=57.8

Q ss_pred             eeEEEE-eCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc---CCHHHHhh---CCCCCEEE
Q 017143            7 VKYGII-GMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF---PGHQELLD---SGLCDVVV   79 (376)
Q Consensus         7 ~~v~ii-G~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~---~~~~D~V~   79 (376)
                      -+|.|+ |+|.+|...+..++..   +.+++++ ++++++++.+    +++|.+ .++   +++.+.+.   ...+|+|+
T Consensus       152 ~~VlV~gg~G~vG~~a~qla~~~---Ga~Vi~~-~~~~~~~~~~----~~lGa~-~vi~~~~~~~~~~~~~~~~g~Dvv~  222 (346)
T 3fbg_A          152 KTLLIINGAGGVGSIATQIAKAY---GLRVITT-ASRNETIEWT----KKMGAD-IVLNHKESLLNQFKTQGIELVDYVF  222 (346)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHT---TCEEEEE-CCSHHHHHHH----HHHTCS-EEECTTSCHHHHHHHHTCCCEEEEE
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHc---CCEEEEE-eCCHHHHHHH----HhcCCc-EEEECCccHHHHHHHhCCCCccEEE
Confidence            478999 6899999877766654   7787765 6666644433    345654 222   23333332   23589999


Q ss_pred             EeCCCCccHHHHHHHHcCCCCCeEEE
Q 017143           80 VSTPNMTHYQILMDIINHPKPHHVLV  105 (376)
Q Consensus        80 i~t~~~~h~~~~~~al~~~~g~~Vl~  105 (376)
                      .++......+.+.++++.+ |+-|.+
T Consensus       223 d~~g~~~~~~~~~~~l~~~-G~iv~~  247 (346)
T 3fbg_A          223 CTFNTDMYYDDMIQLVKPR-GHIATI  247 (346)
T ss_dssp             ESSCHHHHHHHHHHHEEEE-EEEEES
T ss_pred             ECCCchHHHHHHHHHhccC-CEEEEE
Confidence            9998777778888888743 554444

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=95.33  E-value=0.04  Score=49.65  Aligned_cols=131  Identities=15%  Similarity=0.072  Sum_probs=76.9

Q ss_pred             eeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc--C--C-HHHHhhCCCCCEEEE
Q 017143            7 VKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF--P--G-HQELLDSGLCDVVVV   80 (376)
Q Consensus         7 ~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~--~--~-~~~~l~~~~~D~V~i   80 (376)
                      -+|.|+| +|.+|...+..++..   +.++++++  +++   + .++++++|.+ .++  +  + +.+.+  ..+|+|+-
T Consensus       154 ~~vlV~Ga~G~vG~~a~q~a~~~---Ga~vi~~~--~~~---~-~~~~~~lGa~-~~i~~~~~~~~~~~~--~g~D~v~d  221 (321)
T 3tqh_A          154 DVVLIHAGAGGVGHLAIQLAKQK---GTTVITTA--SKR---N-HAFLKALGAE-QCINYHEEDFLLAIS--TPVDAVID  221 (321)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHT---TCEEEEEE--CHH---H-HHHHHHHTCS-EEEETTTSCHHHHCC--SCEEEEEE
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHc---CCEEEEEe--ccc---h-HHHHHHcCCC-EEEeCCCcchhhhhc--cCCCEEEE
Confidence            4789997 899999877776664   77888876  233   2 3456667765 222  2  2 33433  34899999


Q ss_pred             eCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCce
Q 017143           81 STPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQV  158 (376)
Q Consensus        81 ~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i  158 (376)
                      ++....- ..+.++++.+ |+-|.+  .. .....   +......+ ++.+.-.........+..+.+++++|.|-.+
T Consensus       222 ~~g~~~~-~~~~~~l~~~-G~iv~~--g~-~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~  290 (321)
T 3tqh_A          222 LVGGDVG-IQSIDCLKET-GCIVSV--PT-ITAGR---VIEVAKQK-HRRAFGLLKQFNIEELHYLGKLVSEDKLRIE  290 (321)
T ss_dssp             SSCHHHH-HHHGGGEEEE-EEEEEC--CS-TTHHH---HHHHHHHT-TCEEECCCCCCCHHHHHHHHHHHHTTSSCCC
T ss_pred             CCCcHHH-HHHHHhccCC-CEEEEe--CC-CCchh---hhhhhhhc-ceEEEEEecCCCHHHHHHHHHHHHCCCcccc
Confidence            9886443 6667777742 554544  21 12222   22223133 5444332222233567888888898887653

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=95.29  E-value=0.048  Score=52.00  Aligned_cols=64  Identities=22%  Similarity=0.237  Sum_probs=48.6

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t   82 (376)
                      ..+|+|||+|.+|+..+..++.+   +.+|+ ++|+++.+   ..+ +...|+.   +.++++++..  .|+|++++
T Consensus       277 GktVgIIG~G~IG~~vA~~l~~~---G~~V~-v~d~~~~~---~~~-a~~~G~~---~~~l~ell~~--aDiVi~~~  340 (494)
T 3d64_A          277 GKIAVVAGYGDVGKGCAQSLRGL---GATVW-VTEIDPIC---ALQ-AAMEGYR---VVTMEYAADK--ADIFVTAT  340 (494)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTT---TCEEE-EECSCHHH---HHH-HHTTTCE---ECCHHHHTTT--CSEEEECS
T ss_pred             CCEEEEEccCHHHHHHHHHHHHC---CCEEE-EEeCChHh---HHH-HHHcCCE---eCCHHHHHhc--CCEEEECC
Confidence            46899999999999988888876   78866 68998863   211 2234543   3579999987  89999997

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=95.18  E-value=0.061  Score=48.98  Aligned_cols=132  Identities=9%  Similarity=-0.014  Sum_probs=76.9

Q ss_pred             eeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC-CccCCHHHHhh----CCCCCEEEE
Q 017143            7 VKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL-KVFPGHQELLD----SGLCDVVVV   80 (376)
Q Consensus         7 ~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~~~D~V~i   80 (376)
                      -+|.|+| +|.+|...+..++..   +.+++++  .++++++.    ++++|.+. ....++.+.+.    ...+|+|+-
T Consensus       152 ~~VlV~Ga~g~iG~~~~q~a~~~---Ga~Vi~~--~~~~~~~~----~~~lGa~~i~~~~~~~~~~~~~~~~~g~D~vid  222 (343)
T 3gaz_A          152 QTVLIQGGGGGVGHVAIQIALAR---GARVFAT--ARGSDLEY----VRDLGATPIDASREPEDYAAEHTAGQGFDLVYD  222 (343)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT---TCEEEEE--ECHHHHHH----HHHHTSEEEETTSCHHHHHHHHHTTSCEEEEEE
T ss_pred             CEEEEecCCCHHHHHHHHHHHHC---CCEEEEE--eCHHHHHH----HHHcCCCEeccCCCHHHHHHHHhcCCCceEEEE
Confidence            4799999 799999877766654   7788877  55554443    34455441 12234444332    235899999


Q ss_pred             eCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccc----------cCHHHHHHHHHH
Q 017143           81 STPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYR----------YMPPVAKLIQIV  150 (376)
Q Consensus        81 ~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r----------~~p~~~~~k~~i  150 (376)
                      ++.. .....+..+++. .|+-|.+--+...+.      .... .+ ++.+.-.+..+          +...+..+.+++
T Consensus       223 ~~g~-~~~~~~~~~l~~-~G~iv~~g~~~~~~~------~~~~-~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~  292 (343)
T 3gaz_A          223 TLGG-PVLDASFSAVKR-FGHVVSCLGWGTHKL------APLS-FK-QATYSGVFTLHTLLANEGLAHFGEMLREADALV  292 (343)
T ss_dssp             SSCT-HHHHHHHHHEEE-EEEEEESCCCSCCCC------HHHH-HT-TCEEEECCTTHHHHHTCSHHHHHHHHHHHHHHH
T ss_pred             CCCc-HHHHHHHHHHhc-CCeEEEEcccCcccc------chhh-hc-CcEEEEEEeccchhcccchHHHHHHHHHHHHHH
Confidence            9885 556777778874 366666644432222      1222 22 44443322211          124567777888


Q ss_pred             HcCCCCc
Q 017143          151 KSGSIGQ  157 (376)
Q Consensus       151 ~~g~iG~  157 (376)
                      ++|.|-.
T Consensus       293 ~~g~l~~  299 (343)
T 3gaz_A          293 QTGKLAP  299 (343)
T ss_dssp             HTTCCCC
T ss_pred             HCCCccc
Confidence            8887743

>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0

Probab=95.17  E-value=0.11  Score=43.80  Aligned_cols=88  Identities=14%  Similarity=0.160  Sum_probs=54.1

Q ss_pred             CceeEEEE--eCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCc-----cCC-------HHHHh
Q 017143            5 DTVKYGII--GMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKV-----FPG-------HQELL   70 (376)
Q Consensus         5 ~~~~v~ii--G~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~-----~~~-------~~~~l   70 (376)
                      .++||+|.  |.|.-....+.++...  -.+++++|+...++.  ...+.|+++|+|+..     |.+       +.+.|
T Consensus         4 ~~~riavl~SG~Gsnl~all~~~~~~--~~~eI~~Vis~~~~a--~~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l   79 (215)
T 3tqr_A            4 EPLPIVVLISGNGTNLQAIIGAIQKG--LAIEIRAVISNRADA--YGLKRAQQADIPTHIIPHEEFPSRTDFESTLQKTI   79 (215)
T ss_dssp             CCEEEEEEESSCCHHHHHHHHHHHTT--CSEEEEEEEESCTTC--HHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEEeCCcHHHHHHHHHHHcC--CCCEEEEEEeCCcch--HHHHHHHHcCCCEEEeCccccCchhHhHHHHHHHH
Confidence            36899999  5565444555554442  368999988754442  456788899998322     122       23456


Q ss_pred             hCCCCCEEEEeCCCCccHHHHHHHHc
Q 017143           71 DSGLCDVVVVSTPNMTHYQILMDIIN   96 (376)
Q Consensus        71 ~~~~~D~V~i~t~~~~h~~~~~~al~   96 (376)
                      ++.++|+++++.-...=.+-++...+
T Consensus        80 ~~~~~Dliv~agy~~il~~~~l~~~~  105 (215)
T 3tqr_A           80 DHYDPKLIVLAGFMRKLGKAFVSHYS  105 (215)
T ss_dssp             HTTCCSEEEESSCCSCCCHHHHHHTT
T ss_pred             HhcCCCEEEEccchhhCCHHHHhhcc
Confidence            67789999998865433333444433

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=95.15  E-value=0.11  Score=47.44  Aligned_cols=106  Identities=15%  Similarity=0.239  Sum_probs=66.4

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC-
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN-   84 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~-   84 (376)
                      -.+|+|+|+|.+|...+..+...   +.+|+ ++|+++.+    .+++++++..  . -+.++++.. +.|+++-|.-. 
T Consensus       175 GktV~I~G~GnVG~~~A~~l~~~---GakVv-vsD~~~~~----~~~a~~~ga~--~-v~~~ell~~-~~DIliP~A~~~  242 (355)
T 1c1d_A          175 GLTVLVQGLGAVGGSLASLAAEA---GAQLL-VADTDTER----VAHAVALGHT--A-VALEDVLST-PCDVFAPCAMGG  242 (355)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT---TCEEE-EECSCHHH----HHHHHHTTCE--E-CCGGGGGGC-CCSEEEECSCSC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHC---CCEEE-EEeCCccH----HHHHHhcCCE--E-eChHHhhcC-ccceecHhHHHh
Confidence            46899999999999888877775   88998 99998763    4556667643  3 366788874 48988765433 


Q ss_pred             CccHHHHHHHHcCCCCCeEEEecCCCC-CHHHHHHHHHHHHhCCCeEEE
Q 017143           85 MTHYQILMDIINHPKPHHVLVEKPLCT-TVADCKKVVDAARKRPDILVQ  132 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~~Vl~EKP~a~-~~~e~~~l~~~a~~~~~~~~~  132 (376)
                      ....+.+ +.++    ..+++|--=.. +.+++.++++   ++ ++.+.
T Consensus       243 ~I~~~~~-~~lk----~~iVie~AN~p~t~~eA~~~L~---~~-gIlv~  282 (355)
T 1c1d_A          243 VITTEVA-RTLD----CSVVAGAANNVIADEAASDILH---AR-GILYA  282 (355)
T ss_dssp             CBCHHHH-HHCC----CSEECCSCTTCBCSHHHHHHHH---HT-TCEEC
T ss_pred             hcCHHHH-hhCC----CCEEEECCCCCCCCHHHHHHHH---hC-CEEEE
Confidence            2333332 3444    35777753322 2245543332   33 65554

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=95.10  E-value=0.045  Score=49.43  Aligned_cols=74  Identities=14%  Similarity=0.125  Sum_probs=48.1

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHH-HHHHHHH--hcCCC--CCccCCHHHHhhCCCCCEEEE
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQ-QALKLAN--AFDWP--LKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~~--~~~~~--~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      ..||+|||+|.+|...+..++..  +-+.-+.++|+++++.+ .+.++..  .+...  +...+++++ +++  .|+|+|
T Consensus        21 ~~kV~ViGaG~vG~~~a~~la~~--g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~d--aDiVIi   95 (330)
T 3ldh_A           21 YNKITVVGCDAVGMADAISVLMK--DLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAG--SKLVVI   95 (330)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHHH--CCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSS--CSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCC--CCEEEE
Confidence            57999999999999888877776  33434568899887442 2222322  12111  223467876 555  899999


Q ss_pred             eCCC
Q 017143           81 STPN   84 (376)
Q Consensus        81 ~t~~   84 (376)
                      +...
T Consensus        96 taG~   99 (330)
T 3ldh_A           96 TAGA   99 (330)
T ss_dssp             CCSC
T ss_pred             eCCC
Confidence            8653

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=95.08  E-value=0.0014  Score=58.56  Aligned_cols=76  Identities=13%  Similarity=0.141  Sum_probs=45.4

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCC-CCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDW-PLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      ++||+|||+|.+|......|.+.   +.+|+ +++++++.++    .....|. +.....+..+.+. ...|+|++++++
T Consensus         2 ~mkI~iiGaGa~G~~~a~~L~~~---g~~V~-~~~r~~~~~~----~~~~~g~~~~~~~~~~~~~~~-~~~D~vilavk~   72 (294)
T 3g17_A            2 SLSVAIIGPGAVGTTIAYELQQS---LPHTT-LIGRHAKTIT----YYTVPHAPAQDIVVKGYEDVT-NTFDVIIIAVKT   72 (294)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHH---CTTCE-EEESSCEEEE----EESSTTSCCEEEEEEEGGGCC-SCEEEEEECSCG
T ss_pred             CcEEEEECCCHHHHHHHHHHHHC---CCeEE-EEEeccCcEE----EEecCCeeccceecCchHhcC-CCCCEEEEeCCc
Confidence            37999999999999888888775   44555 5567655321    1112231 1112223333331 348999999998


Q ss_pred             CccHHH
Q 017143           85 MTHYQI   90 (376)
Q Consensus        85 ~~h~~~   90 (376)
                      ....+.
T Consensus        73 ~~~~~~   78 (294)
T 3g17_A           73 HQLDAV   78 (294)
T ss_dssp             GGHHHH
T ss_pred             cCHHHH
Confidence            764443

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=95.04  E-value=0.12  Score=46.97  Aligned_cols=135  Identities=16%  Similarity=0.132  Sum_probs=79.8

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCH--HHH---hh-CCCCCEEEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGH--QEL---LD-SGLCDVVVV   80 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---l~-~~~~D~V~i   80 (376)
                      -+|.|+|+|.+|...+..++... ++.++++ .++++++++.    ++++|.+ .+++.-  ++.   +. ...+|+|+-
T Consensus       172 ~~VlV~GaG~vG~~aiqlak~~~-~Ga~Vi~-~~~~~~~~~~----~~~lGa~-~vi~~~~~~~~~~~~~~g~g~D~vid  244 (344)
T 2h6e_A          172 PVVIVNGIGGLAVYTIQILKALM-KNITIVG-ISRSKKHRDF----ALELGAD-YVSEMKDAESLINKLTDGLGASIAID  244 (344)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHC-TTCEEEE-ECSCHHHHHH----HHHHTCS-EEECHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHhc-CCCEEEE-EeCCHHHHHH----HHHhCCC-EEeccccchHHHHHhhcCCCccEEEE
Confidence            47999999999987766554431 2678665 5677764443    4456654 333311  112   22 225899999


Q ss_pred             eCCCCccHHHHHHHHcCCCCCeEEEe---cCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCc
Q 017143           81 STPNMTHYQILMDIINHPKPHHVLVE---KPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQ  157 (376)
Q Consensus        81 ~t~~~~h~~~~~~al~~~~g~~Vl~E---KP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~  157 (376)
                      ++......+.+.++++. .|+-|++-   .+...+..      ... .+ ++.+. +........+..+.+++++|++-.
T Consensus       245 ~~g~~~~~~~~~~~l~~-~G~iv~~g~~~~~~~~~~~------~~~-~~-~~~i~-g~~~~~~~~~~~~~~l~~~g~i~~  314 (344)
T 2h6e_A          245 LVGTEETTYNLGKLLAQ-EGAIILVGMEGKRVSLEAF------DTA-VW-NKKLL-GSNYGSLNDLEDVVRLSESGKIKP  314 (344)
T ss_dssp             SSCCHHHHHHHHHHEEE-EEEEEECCCCSSCCCCCHH------HHH-HT-TCEEE-ECCSCCHHHHHHHHHHHHTTSSCC
T ss_pred             CCCChHHHHHHHHHhhc-CCEEEEeCCCCCCcccCHH------HHh-hC-CcEEE-EEecCCHHHHHHHHHHHHcCCCCc
Confidence            99877677788888874 25555553   23333332      223 23 44433 332222346778889999988854


Q ss_pred             e
Q 017143          158 V  158 (376)
Q Consensus       158 i  158 (376)
                      +
T Consensus       315 ~  315 (344)
T 2h6e_A          315 Y  315 (344)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0

Probab=95.03  E-value=0.039  Score=46.56  Aligned_cols=89  Identities=12%  Similarity=0.149  Sum_probs=51.5

Q ss_pred             CceeEEEEeCC--hhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCc-----cC--CHHHHhhCCCC
Q 017143            5 DTVKYGIIGMG--MMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKV-----FP--GHQELLDSGLC   75 (376)
Q Consensus         5 ~~~~v~iiG~G--~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~l~~~~~   75 (376)
                      ++.||+|+-.|  ......+.++... .-..++++|+...++.  ...+.|+++|+|+..     +.  .+.+.|++.++
T Consensus         7 ~~~ri~vl~SG~gsnl~all~~~~~~-~~~~~I~~Vis~~~~a--~~l~~A~~~gIp~~~~~~~~~~~~~~~~~L~~~~~   83 (215)
T 3kcq_A            7 KELRVGVLISGRGSNLEALAKAFSTE-ESSVVISCVISNNAEA--RGLLIAQSYGIPTFVVKRKPLDIEHISTVLREHDV   83 (215)
T ss_dssp             CCEEEEEEESSCCHHHHHHHHHTCCC--CSEEEEEEEESCTTC--THHHHHHHTTCCEEECCBTTBCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCcHHHHHHHHHHHcC-CCCcEEEEEEeCCcch--HHHHHHHHcCCCEEEeCcccCChHHHHHHHHHhCC
Confidence            45677776655  3334444444332 1247999988754432  356778899998322     21  23455666779


Q ss_pred             CEEEEeCCCCccHHHHHHHHc
Q 017143           76 DVVVVSTPNMTHYQILMDIIN   96 (376)
Q Consensus        76 D~V~i~t~~~~h~~~~~~al~   96 (376)
                      |+++++.-...=.+-++...+
T Consensus        84 Dlivlagy~~IL~~~~l~~~~  104 (215)
T 3kcq_A           84 DLVCLAGFMSILPEKFVTDWH  104 (215)
T ss_dssp             SEEEESSCCSCCCHHHHHHTT
T ss_pred             CEEEEeCCceEeCHHHHhhcc
Confidence            999998865543344444433

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=95.02  E-value=0.088  Score=45.43  Aligned_cols=98  Identities=11%  Similarity=0.029  Sum_probs=63.1

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC--C-CccCCHHHHhhCCCCCEEEEeC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP--L-KVFPGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~l~~~~~D~V~i~t   82 (376)
                      ..+|.-+|||. |.......... .+..++++ +|.+++..+.+++..+++|++  + -...|+.+.+.+..+|+|+...
T Consensus        94 ~~~vldiG~G~-G~~~~~l~~~~-~~~~~v~~-~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~  170 (255)
T 3mb5_A           94 GDFIVEAGVGS-GALTLFLANIV-GPEGRVVS-YEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEENVDHVILDL  170 (255)
T ss_dssp             TCEEEEECCTT-SHHHHHHHHHH-CTTSEEEE-ECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCCSEEEEEECS
T ss_pred             CCEEEEecCCc-hHHHHHHHHHh-CCCeEEEE-EecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCCCcCEEEECC
Confidence            46899999995 55433333332 25778776 699998887777777666754  1 1235666666666689998876


Q ss_pred             CCC-ccHHHHHHHHcCCCCCeEEEecC
Q 017143           83 PNM-THYQILMDIINHPKPHHVLVEKP  108 (376)
Q Consensus        83 ~~~-~h~~~~~~al~~~~g~~Vl~EKP  108 (376)
                      |.. .-.+.+.++|+  .|-.+++.-|
T Consensus       171 ~~~~~~l~~~~~~L~--~gG~l~~~~~  195 (255)
T 3mb5_A          171 PQPERVVEHAAKALK--PGGFFVAYTP  195 (255)
T ss_dssp             SCGGGGHHHHHHHEE--EEEEEEEEES
T ss_pred             CCHHHHHHHHHHHcC--CCCEEEEEEC
Confidence            653 35666667777  4445555444

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=95.02  E-value=0.042  Score=50.48  Aligned_cols=134  Identities=15%  Similarity=0.110  Sum_probs=79.9

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCc----cCCHHHHhh----CCCCCEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKV----FPGHQELLD----SGLCDVV   78 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~----~~~~D~V   78 (376)
                      -+|.|+|+|.+|...+...+..   +.+.+.++++++++++.+++++.. -+....    -.++.+.+.    ...+|+|
T Consensus       181 ~~VlV~GaG~vG~~aiqlak~~---Ga~~Vi~~~~~~~~~~~a~~l~~~-~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvv  256 (363)
T 3m6i_A          181 DPVLICGAGPIGLITMLCAKAA---GACPLVITDIDEGRLKFAKEICPE-VVTHKVERLSAEESAKKIVESFGGIEPAVA  256 (363)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT---TCCSEEEEESCHHHHHHHHHHCTT-CEEEECCSCCHHHHHHHHHHHTSSCCCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHc---CCCEEEEECCCHHHHHHHHHhchh-cccccccccchHHHHHHHHHHhCCCCCCEE
Confidence            4789999999998877666554   777334567788766655554211 110000    012222221    2369999


Q ss_pred             EEeCCCCccHHHHHHHHcCCCCCeEEEe---cCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCC
Q 017143           79 VVSTPNMTHYQILMDIINHPKPHHVLVE---KPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSI  155 (376)
Q Consensus        79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~E---KP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~i  155 (376)
                      +-++........+.++++.+ |+-|++-   .+...+..      ... .+ ++.+.-.+  ++...+..+.+++++|++
T Consensus       257 id~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~------~~~-~~-~~~i~g~~--~~~~~~~~~~~l~~~g~i  325 (363)
T 3m6i_A          257 LECTGVESSIAAAIWAVKFG-GKVFVIGVGKNEIQIPFM------RAS-VR-EVDLQFQY--RYCNTWPRAIRLVENGLV  325 (363)
T ss_dssp             EECSCCHHHHHHHHHHSCTT-CEEEECCCCCSCCCCCHH------HHH-HH-TCEEEECC--SCSSCHHHHHHHHHTTSS
T ss_pred             EECCCChHHHHHHHHHhcCC-CEEEEEccCCCCccccHH------HHH-hc-CcEEEEcc--CCHHHHHHHHHHHHhCCC
Confidence            99999877788888999853 6666653   33333332      233 22 33333322  335667888899999887

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=94.98  E-value=0.042  Score=49.82  Aligned_cols=74  Identities=9%  Similarity=0.194  Sum_probs=47.6

Q ss_pred             CceeEEEEeC-ChhhHHHHHHhhhhcCCC------cEEEEEeCCC----hhhHH-HHHHHHHh-cCC--CCCccCCHHHH
Q 017143            5 DTVKYGIIGM-GMMGREHFINLHHLRSQG------VSVVCIADPH----LQSRQ-QALKLANA-FDW--PLKVFPGHQEL   69 (376)
Q Consensus         5 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~------~~~~~v~d~~----~~~~~-~~~~~~~~-~~~--~~~~~~~~~~~   69 (376)
                      +++||+|+|+ |++|...+..+...  +.      .+|+ ++|++    +++.+ .+.++... +.+  ++..++++.+.
T Consensus         4 ~~~KI~ViGaaG~VG~~l~~~L~~~--~~~~~~~~~ev~-l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~a   80 (329)
T 1b8p_A            4 TPMRVAVTGAAGQICYSLLFRIANG--DMLGKDQPVILQ-LLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTA   80 (329)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTT--TTTCTTCCEEEE-EECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhC--CCcCCCCCCEEE-EEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHH
Confidence            4689999997 99999888777664  22      2555 58988    44221 23334321 111  12344778888


Q ss_pred             hhCCCCCEEEEeCC
Q 017143           70 LDSGLCDVVVVSTP   83 (376)
Q Consensus        70 l~~~~~D~V~i~t~   83 (376)
                      +++  .|+|+++..
T Consensus        81 l~~--aD~Vi~~ag   92 (329)
T 1b8p_A           81 FKD--ADVALLVGA   92 (329)
T ss_dssp             TTT--CSEEEECCC
T ss_pred             hCC--CCEEEEeCC
Confidence            876  899998876

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=94.93  E-value=0.058  Score=48.34  Aligned_cols=72  Identities=24%  Similarity=0.226  Sum_probs=46.7

Q ss_pred             eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHH-HHHHHHh---c--CCCCCccCCHHHHhhCCCCCEEEEe
Q 017143            8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQ-ALKLANA---F--DWPLKVFPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~---~--~~~~~~~~~~~~~l~~~~~D~V~i~   81 (376)
                      ||+|||+|.+|...+..+...   ++.-+.++|+++++++. +.++...   .  ...+..++++ +.+++  .|+|+++
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~---~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~--aD~Vi~~   74 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMR---GYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRG--SDIVLVT   74 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHH---TCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTT--CSEEEEC
T ss_pred             CEEEECcCHHHHHHHHHHHhC---CCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCC--CCEEEEe
Confidence            799999999999877666654   33335578999875532 3333321   2  2223344677 45655  8999999


Q ss_pred             CCCC
Q 017143           82 TPNM   85 (376)
Q Consensus        82 t~~~   85 (376)
                      .+..
T Consensus        75 ag~~   78 (308)
T 2d4a_B           75 AGIG   78 (308)
T ss_dssp             CSCC
T ss_pred             CCCC
Confidence            7654

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=94.92  E-value=0.046  Score=49.15  Aligned_cols=72  Identities=24%  Similarity=0.268  Sum_probs=47.1

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC--CCc---cCCHHHHhhCCCCCEEEE
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP--LKV---FPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~l~~~~~D~V~i   80 (376)
                      +||+|||+ |.+|...+..|...  +-+.-+.++|+++ ....+.++... ..+  +..   .+++++.+++  .|+|++
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~--~~~~ev~L~Di~~-~~~~a~dL~~~-~~~~~l~~~~~t~d~~~a~~~--aDvVvi   74 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNS--PLVSRLTLYDIAH-TPGVAADLSHI-ETRATVKGYLGPEQLPDCLKG--CDVVVI   74 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTC--TTCSEEEEEESSS-HHHHHHHHTTS-SSSCEEEEEESGGGHHHHHTT--CSEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhC--CCCcEEEEEeCCc-cHHHHHHHhcc-CcCceEEEecCCCCHHHHhCC--CCEEEE
Confidence            48999998 99999877777654  2233355789887 32344444332 111  222   2478888876  899999


Q ss_pred             eCCC
Q 017143           81 STPN   84 (376)
Q Consensus        81 ~t~~   84 (376)
                      +...
T Consensus        75 ~ag~   78 (314)
T 1mld_A           75 PAGV   78 (314)
T ss_dssp             CCSC
T ss_pred             CCCc
Confidence            8754

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=94.92  E-value=0.051  Score=49.93  Aligned_cols=73  Identities=19%  Similarity=0.106  Sum_probs=47.6

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCC--ccCCHHHHhhCCCCCEEEEeCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLK--VFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      .-+|.|+|+|.+|...+..++..   +.+|+ ++|+++++++.+++..... +.+.  ...++.+.+..  .|+|+.+++
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~---Ga~V~-v~dr~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~DvVI~~~~  239 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGL---GAQVQ-IFDINVERLSYLETLFGSR-VELLYSNSAEIETAVAE--ADLLIGAVL  239 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT---TCEEE-EEESCHHHHHHHHHHHGGG-SEEEECCHHHHHHHHHT--CSEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC---CCEEE-EEeCCHHHHHHHHHhhCce-eEeeeCCHHHHHHHHcC--CCEEEECCC
Confidence            36899999999999988888876   56655 6899988655444332111 1000  11234555554  899999987


Q ss_pred             CC
Q 017143           84 NM   85 (376)
Q Consensus        84 ~~   85 (376)
                      ..
T Consensus       240 ~~  241 (361)
T 1pjc_A          240 VP  241 (361)
T ss_dssp             CT
T ss_pred             cC
Confidence            53

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=94.89  E-value=0.12  Score=47.36  Aligned_cols=136  Identities=8%  Similarity=0.075  Sum_probs=78.5

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCC-------HHHHhhC-CCCCE
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPG-------HQELLDS-GLCDV   77 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~-~~~D~   77 (376)
                      -+|.|+|+ |.+|...+...+..   +.+++++++.++.+.+ ..++++++|.+ .+++.       +.++... ..+|+
T Consensus       169 ~~VlV~Ga~G~vG~~aiqlak~~---Ga~vi~~~~~~~~~~~-~~~~~~~lGa~-~vi~~~~~~~~~~~~~~~~~~~~Dv  243 (357)
T 1zsy_A          169 DSVIQNASNSGVGQAVIQIAAAL---GLRTINVVRDRPDIQK-LSDRLKSLGAE-HVITEEELRRPEMKNFFKDMPQPRL  243 (357)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHH---TCEEEEEECCCSCHHH-HHHHHHHTTCS-EEEEHHHHHSGGGGGTTSSSCCCSE
T ss_pred             CEEEEeCCcCHHHHHHHHHHHHc---CCEEEEEecCccchHH-HHHHHHhcCCc-EEEecCcchHHHHHHHHhCCCCceE
Confidence            47999997 99999877766665   7888988887654222 23456677865 33331       1122222 14899


Q ss_pred             EEEeCCCCccHHHHHHHHcCCCCCeEEEe----cCCCCCHHHHHHHHHHHHhCCCeEEEEeeccc---------cCHHHH
Q 017143           78 VVVSTPNMTHYQILMDIINHPKPHHVLVE----KPLCTTVADCKKVVDAARKRPDILVQVGLEYR---------YMPPVA  144 (376)
Q Consensus        78 V~i~t~~~~h~~~~~~al~~~~g~~Vl~E----KP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r---------~~p~~~  144 (376)
                      |+-++....- ..+.++++. .|+-|++-    +|...+...      .. .+ ++.+.-.+...         +...+.
T Consensus       244 vid~~g~~~~-~~~~~~l~~-~G~iv~~G~~~~~~~~~~~~~------~~-~~-~~~i~g~~~~~~~~~~~~~~~~~~~~  313 (357)
T 1zsy_A          244 ALNCVGGKSS-TELLRQLAR-GGTMVTYGGMAKQPVVASVSL------LI-FK-DLKLRGFWLSQWKKDHSPDQFKELIL  313 (357)
T ss_dssp             EEESSCHHHH-HHHHTTSCT-TCEEEECCCCTTCCBCCCHHH------HH-HS-CCEEEECCHHHHHHHSCHHHHHHHHH
T ss_pred             EEECCCcHHH-HHHHHhhCC-CCEEEEEecCCCCCCCCCHHH------HH-hc-CceEEEEEcchhcccCCHHHHHHHHH
Confidence            9999875432 345666764 36666652    344444422      22 23 44443322211         122356


Q ss_pred             HHHHHHHcCCCCc
Q 017143          145 KLIQIVKSGSIGQ  157 (376)
Q Consensus       145 ~~k~~i~~g~iG~  157 (376)
                      .+.+++++|+|-.
T Consensus       314 ~~~~l~~~g~l~~  326 (357)
T 1zsy_A          314 TLCDLIRRGQLTA  326 (357)
T ss_dssp             HHHHHHHTTSSCC
T ss_pred             HHHHHHHcCCCcC
Confidence            7778888888753

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=94.88  E-value=0.085  Score=45.03  Aligned_cols=91  Identities=14%  Similarity=0.007  Sum_probs=54.0

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC--CccCCHHHHhh--CCCCCEEEEe
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL--KVFPGHQELLD--SGLCDVVVVS   81 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~--~~~~D~V~i~   81 (376)
                      +.+|.|+|+|.+|...+..|...   +. ++ ++|++++.   ++++.  .++.+  .-.++.+.+-+  -.+.|+|+++
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~---g~-v~-vid~~~~~---~~~~~--~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~   78 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGS---EV-FV-LAEDENVR---KKVLR--SGANFVHGDPTRVSDLEKANVRGARAVIVD   78 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTS---EE-EE-EESCGGGH---HHHHH--TTCEEEESCTTCHHHHHHTTCTTCSEEEEC
T ss_pred             CCEEEEECCChHHHHHHHHHHhC---Ce-EE-EEECCHHH---HHHHh--cCCeEEEcCCCCHHHHHhcCcchhcEEEEc
Confidence            46899999999999988887664   55 55 67998874   44433  45431  11233333322  1358999999


Q ss_pred             CCCCccHHHHHH-HHcCCCCCeEEEe
Q 017143           82 TPNMTHYQILMD-IINHPKPHHVLVE  106 (376)
Q Consensus        82 t~~~~h~~~~~~-al~~~~g~~Vl~E  106 (376)
                      ++++.--..+.. |-+.+...+|++.
T Consensus        79 ~~~d~~n~~~~~~a~~~~~~~~iia~  104 (234)
T 2aef_A           79 LESDSETIHCILGIRKIDESVRIIAE  104 (234)
T ss_dssp             CSCHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred             CCCcHHHHHHHHHHHHHCCCCeEEEE
Confidence            998643333333 3231133366664

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=94.87  E-value=0.055  Score=48.94  Aligned_cols=75  Identities=13%  Similarity=0.189  Sum_probs=47.1

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHH-HHHHHHHh--cC-CC-CCccCCHHHHhhCCCCCEE
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQ-QALKLANA--FD-WP-LKVFPGHQELLDSGLCDVV   78 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~~~--~~-~~-~~~~~~~~~~l~~~~~D~V   78 (376)
                      .+..||+|||+|.+|......+...  +-+.-+.++|+++++.+ .+.++..-  +. .+ +...+++++ +++  .|+|
T Consensus        17 ~~~~kV~ViGaG~vG~~~a~~l~~~--~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~~-~~~--aDiV   91 (331)
T 4aj2_A           17 VPQNKITVVGVGAVGMACAISILMK--DLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYSV-TAN--SKLV   91 (331)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHT--TCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGGG-GTT--EEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhC--CCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHHH-hCC--CCEE
Confidence            3468999999999999877777664  33334558999887432 22333321  21 11 123467775 554  8999


Q ss_pred             EEeCC
Q 017143           79 VVSTP   83 (376)
Q Consensus        79 ~i~t~   83 (376)
                      +|+..
T Consensus        92 vi~aG   96 (331)
T 4aj2_A           92 IITAG   96 (331)
T ss_dssp             EECCS
T ss_pred             EEccC
Confidence            99864

>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso; irreversible inhibitor, protein-ligand complex,X-RAY, glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A* 1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A*

Probab=94.83  E-value=0.1  Score=47.19  Aligned_cols=99  Identities=19%  Similarity=0.176  Sum_probs=64.7

Q ss_pred             ceeEEEEeCChhhHHHHHH----hhhhcCCCcEEEEEeCC--ChhhHHHHHHHHH------hcCCCC-------------
Q 017143            6 TVKYGIIGMGMMGREHFIN----LHHLRSQGVSVVCIADP--HLQSRQQALKLAN------AFDWPL-------------   60 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~----~~~~~~~~~~~~~v~d~--~~~~~~~~~~~~~------~~~~~~-------------   60 (376)
                      ++||||-|.|+||+..+++    +...  +++++++|-|+  +.+   ...-+-+      +|.-.+             
T Consensus         2 ~~kv~INGFGrIGr~v~Ra~~~~~~~~--~~~~vvaINd~~~d~~---~~a~llkyDS~hG~f~~~v~~~~~~~~~~~~~   76 (359)
T 3ids_C            2 PIKVGINGFGRIGRMVFQALCEDGLLG--TEIDVVAVVDMNTDAE---YFAYQMRYDTVHGKFKYEVTTTKSSPSVAKDD   76 (359)
T ss_dssp             CEEEEEECTTHHHHHHHHHHHHTTCBT--TTEEEEEEECSSCCHH---HHHHHHHEETTTEECSSCEEEECSCTTSSSCC
T ss_pred             ceEEEEECCChHHHHHHHHhHHHHhcC--CCcEEEEEecCCCCHH---HHHHHhcccCCCCCEeeEEEecccccccCCCC
Confidence            5899999999999988887    4443  68999999995  333   2222221      111111             


Q ss_pred             ---------CccC---CHHHHhh-CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCC
Q 017143           61 ---------KVFP---GHQELLD-SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLC  110 (376)
Q Consensus        61 ---------~~~~---~~~~~l~-~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a  110 (376)
                               +++.   +.+++-. +..+|+|+-||.-..-.+.+..++++|+ |-|++--|..
T Consensus        77 ~l~inGk~I~v~~~e~dp~~i~w~~~gvDiVlesTG~f~s~e~A~~hl~aGA-kkViISaps~  138 (359)
T 3ids_C           77 TLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGA-RKVVISAPAS  138 (359)
T ss_dssp             EEEETTEEEEECCCCSSTTTSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTC-CEEEESSCCB
T ss_pred             EEEECCEEEEEEEccCCcccCCccccCccEEEEeccccCCHHHHHHHHHcCC-CEEEECCCCC
Confidence                     1121   2222110 1258999999999999999999999653 5688877754

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=94.82  E-value=0.071  Score=49.88  Aligned_cols=78  Identities=10%  Similarity=0.087  Sum_probs=50.3

Q ss_pred             ceeEEEEeCChh-hHHHHHHhhh-hcC-CCcEEEEEeCCChhhHHHHHHHHHhc---CCCCCccCCHHHHhhCCCCCEEE
Q 017143            6 TVKYGIIGMGMM-GREHFINLHH-LRS-QGVSVVCIADPHLQSRQQALKLANAF---DWPLKVFPGHQELLDSGLCDVVV   79 (376)
Q Consensus         6 ~~~v~iiG~G~~-g~~~~~~~~~-~~~-~~~~~~~v~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~D~V~   79 (376)
                      ++||+|||+|.. +...+..+.. ..+ +.-+ +.++|+++++++.+..++...   ...+..++|+++.+++  .|+|+
T Consensus         2 ~~KI~IIGaG~v~~~~l~~~l~~~~~~l~~~e-l~L~Di~~~~~~~~~~~~~~~~~~~~~v~~t~d~~~al~~--AD~Vi   78 (417)
T 1up7_A            2 HMRIAVIGGGSSYTPELVKGLLDISEDVRIDE-VIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVD--AKYVI   78 (417)
T ss_dssp             CCEEEEETTTCTTHHHHHHHHHHHTTTSCCCE-EEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTT--CSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcccCCCcCE-EEEEeCCHHHHHHHHHHHHHHhhCCeEEEEeCCHHHHhCC--CCEEE
Confidence            579999999984 2233334444 211 2344 558999998776655555422   1223456788888876  89999


Q ss_pred             EeCCCCc
Q 017143           80 VSTPNMT   86 (376)
Q Consensus        80 i~t~~~~   86 (376)
                      ++.....
T Consensus        79 itagvg~   85 (417)
T 1up7_A           79 FQFRPGG   85 (417)
T ss_dssp             ECCCTTH
T ss_pred             EcCCCCC
Confidence            9996543

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=94.81  E-value=0.092  Score=43.60  Aligned_cols=75  Identities=15%  Similarity=-0.026  Sum_probs=47.9

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-CC-ccCCHHHHhh-CCCCCEEEEeC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LK-VFPGHQELLD-SGLCDVVVVST   82 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~l~-~~~~D~V~i~t   82 (376)
                      ..+|.-||||. |...+......  +..++++ +|.+++..+.+++..++.+++ +. ...+..+.+. ...+|+|++..
T Consensus        41 ~~~vLDiG~G~-G~~~~~la~~~--~~~~v~~-vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~  116 (204)
T 3e05_A           41 DLVMWDIGAGS-ASVSIEASNLM--PNGRIFA-LERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGG  116 (204)
T ss_dssp             TCEEEEETCTT-CHHHHHHHHHC--TTSEEEE-EECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEESC
T ss_pred             CCEEEEECCCC-CHHHHHHHHHC--CCCEEEE-EeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEECC
Confidence            46899999994 55433333333  5678876 699999887777777666654 11 2244434333 25689988776


Q ss_pred             CC
Q 017143           83 PN   84 (376)
Q Consensus        83 ~~   84 (376)
                      +.
T Consensus       117 ~~  118 (204)
T 3e05_A          117 SG  118 (204)
T ss_dssp             CT
T ss_pred             CC
Confidence            54

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=94.75  E-value=0.04  Score=49.45  Aligned_cols=74  Identities=27%  Similarity=0.341  Sum_probs=46.3

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHH-HHHHHHHh--cCCCCCcc-CCHHHHhhCCCCCEEEEeC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQ-QALKLANA--FDWPLKVF-PGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~~~--~~~~~~~~-~~~~~~l~~~~~D~V~i~t   82 (376)
                      +||+|||+|.+|...+..+...  +-+.-+.++|+++++++ .+.++...  +..+++.. ++++ .+++  .|+|+++.
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~--~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~-a~~~--aD~Vii~a   75 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALL--GVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYG-DLEG--ARAVVLAA   75 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGG-GGTT--EEEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHH-HhCC--CCEEEECC
Confidence            5899999999999877766665  33444558899987543 23344321  11122222 4444 4554  89999998


Q ss_pred             CCC
Q 017143           83 PNM   85 (376)
Q Consensus        83 ~~~   85 (376)
                      +..
T Consensus        76 g~~   78 (310)
T 2xxj_A           76 GVA   78 (310)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            753

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=94.74  E-value=0.084  Score=44.67  Aligned_cols=79  Identities=18%  Similarity=0.133  Sum_probs=53.0

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC---CHHHHhhCCCCCEEEEe
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP---GHQELLDSGLCDVVVVS   81 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~D~V~i~   81 (376)
                      ++-|+.|+|+|..|+..+..+.+   .+++++++.|.++..    .   .-.|+|  ++.   +++++.+.. .+.++++
T Consensus        11 ~~k~v~IiGAGg~g~~v~~~l~~---~~~~~vgfiDd~~~~----~---~~~g~~--Vlg~~~~~~~~~~~~-~~~v~iA   77 (220)
T 4ea9_A           11 AIGGVVIIGGGGHAKVVIESLRA---CGETVAAIVDADPTR----R---AVLGVP--VVGDDLALPMLREQG-LSRLFVA   77 (220)
T ss_dssp             CSSCEEEECCSHHHHHHHHHHHH---TTCCEEEEECSCC----------CBTTBC--EEESGGGHHHHHHTT-CCEEEEC
T ss_pred             CCCCEEEEcCCHHHHHHHHHHHh---CCCEEEEEEeCCccc----C---cCCCee--EECCHHHHHHhhccc-ccEEEEe
Confidence            35689999999999998888776   479999999977651    1   134666  443   355555543 7788888


Q ss_pred             CCCC-ccHHHHHHHHc
Q 017143           82 TPNM-THYQILMDIIN   96 (376)
Q Consensus        82 t~~~-~h~~~~~~al~   96 (376)
                      .++. .+.++...+.+
T Consensus        78 Ig~~~~R~~i~~~l~~   93 (220)
T 4ea9_A           78 IGDNRLRQKLGRKARD   93 (220)
T ss_dssp             CCCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHh
Confidence            8864 34444444555

>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A

Probab=94.73  E-value=0.043  Score=49.60  Aligned_cols=77  Identities=16%  Similarity=0.131  Sum_probs=49.9

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCC-Ch-hhHHHHHHHHHhcCCCCCccCC----------HHHHhh
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADP-HL-QSRQQALKLANAFDWPLKVFPG----------HQELLD   71 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~-~~-~~~~~~~~~~~~~~~~~~~~~~----------~~~~l~   71 (376)
                      |+++||+++|...++...+..+...   +.++++|+.. +. .+....+++|+++|+|+...++          +.+.|+
T Consensus        20 ~~~mrIvf~G~~~fa~~~L~~L~~~---~~~i~~Vvt~pd~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~l~   96 (329)
T 2bw0_A           20 FQSMKIAVIGQSLFGQEVYCHLRKE---GHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKGQALPDVVAKYQ   96 (329)
T ss_dssp             -CCCEEEEECCHHHHHHHHHHHHHT---TCEEEEEEECCCCSSCCCHHHHHHHHHTCCEEECSCCEETTEECHHHHHHHH
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHC---CCeEEEEEeCCCcCCCCCHHHHHHHHcCCCEEecCcccccccccHHHHHHHH
Confidence            3468999999877776666666654   6899999862 21 0011355788899998322222          234555


Q ss_pred             CCCCCEEEEeCC
Q 017143           72 SGLCDVVVVSTP   83 (376)
Q Consensus        72 ~~~~D~V~i~t~   83 (376)
                      ..++|+++++.-
T Consensus        97 ~~~~Dliv~a~y  108 (329)
T 2bw0_A           97 ALGAELNVLPFC  108 (329)
T ss_dssp             TTCCSEEEESSC
T ss_pred             hcCCCEEEEeeh
Confidence            667999998765

>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}

Probab=94.72  E-value=0.12  Score=52.20  Aligned_cols=122  Identities=16%  Similarity=0.204  Sum_probs=79.7

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhh----cCCCcEEEEEeCCChhhHHHHHHH---HHhcCCCCCccCCHHHHhhC-CCCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHL----RSQGVSVVCIADPHLQSRQQALKL---ANAFDWPLKVFPGHQELLDS-GLCD   76 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~----~~~~~~~~~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~-~~~D   76 (376)
                      +..|+.|-|+-.  + |+..+...    ..++.++++.+++....  .-+++   ..+.|+|  +|.|++++.+. +++|
T Consensus       495 ~~trviV~G~tg--~-~~~~ml~~~~~~~~~~~~vVa~V~P~~~g--~~~~~~~G~~~~Gvp--~y~sv~ea~~~~p~~D  567 (829)
T 3pff_A          495 RHTKAIVWGMQT--R-AVQGMLDFDYVCSRDEPSVAAMVYPFTGD--HKQKFYWGHKEILIP--VFKNMADAMRKHPEVD  567 (829)
T ss_dssp             TTCCEEEESCCH--H-HHHHHHHHHHHTTCSSCSEEEEECTTSCS--EEEEEEETTEEEEEE--EESSHHHHHHHCTTCC
T ss_pred             CCCeEEEECCcH--H-HHHHHHHhcccccCCCCcEEEEEcCCCCC--ccceEEecCCcCCcc--cCCcHHHHhhccCCCc
Confidence            458999999752  2 55554443    11568899999876531  00111   1123555  99999999875 4699


Q ss_pred             EEEEeCCCCccHHHHHHHHc-CCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeecc
Q 017143           77 VVVVSTPNMTHYQILMDIIN-HPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEY  137 (376)
Q Consensus        77 ~V~i~t~~~~h~~~~~~al~-~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~  137 (376)
                      +++|++|+..-.+.+.+|++ .| -+.+.|=- -.....+.++|.+.|++. |+ -.+|.|+
T Consensus       568 laVI~vP~~~v~~av~ea~~~~G-vk~~Viis-~Gf~e~~~~~l~~~A~~~-g~-rliGPNc  625 (829)
T 3pff_A          568 VLINFASLRSAYDSTMETMNYAQ-IRTIAIIA-EGIPEALTRKLIKKADQK-GV-TIIGPAT  625 (829)
T ss_dssp             EEEECCCTTTHHHHHHHHTTSTT-CCEEEECC-SCCCHHHHHHHHHHHHHH-TC-EEECSSC
T ss_pred             EEEEeCCHHHHHHHHHHHHhhCC-CCEEEEeC-CCCCHHHHHHHHHHHHHc-CC-EEEcCCC
Confidence            99999999999999999998 54 23343422 223446778999999554 65 3455544

>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}

Probab=94.66  E-value=0.064  Score=45.01  Aligned_cols=90  Identities=12%  Similarity=-0.008  Sum_probs=51.8

Q ss_pred             CCceeEEEEeCCh--hhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCc-----cCC-------HHHH
Q 017143            4 NDTVKYGIIGMGM--MGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKV-----FPG-------HQEL   69 (376)
Q Consensus         4 ~~~~~v~iiG~G~--~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~-----~~~-------~~~~   69 (376)
                      |++.||+|+-.|.  .....+.++... .-.+++++|+...++.  ...+.|+++|+|+..     |.+       +.+.
T Consensus         5 m~~~ri~vl~SG~gsnl~all~~~~~~-~l~~~I~~Visn~~~a--~~l~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~   81 (209)
T 4ds3_A            5 MKRNRVVIFISGGGSNMEALIRAAQAP-GFPAEIVAVFSDKAEA--GGLAKAEAAGIATQVFKRKDFASKEAHEDAILAA   81 (209)
T ss_dssp             -CCEEEEEEESSCCHHHHHHHHHHTST-TCSEEEEEEEESCTTC--THHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHH
T ss_pred             CCCccEEEEEECCcHHHHHHHHHHHcC-CCCcEEEEEEECCccc--HHHHHHHHcCCCEEEeCccccCCHHHHHHHHHHH
Confidence            4567888877663  333444444332 1247999988754432  345788899998322     222       2244


Q ss_pred             hhCCCCCEEEEeCCCCccHHHHHHHHc
Q 017143           70 LDSGLCDVVVVSTPNMTHYQILMDIIN   96 (376)
Q Consensus        70 l~~~~~D~V~i~t~~~~h~~~~~~al~   96 (376)
                      |++.++|+++++.-...=.+-++...+
T Consensus        82 l~~~~~Dliv~agy~~il~~~~l~~~~  108 (209)
T 4ds3_A           82 LDVLKPDIICLAGYMRLLSGRFIAPYE  108 (209)
T ss_dssp             HHHHCCSEEEESSCCSCCCHHHHGGGT
T ss_pred             HHhcCCCEEEEeccccCcCHHHHhhcc
Confidence            555679999998865543334444433

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=94.63  E-value=0.1  Score=50.67  Aligned_cols=34  Identities=24%  Similarity=0.268  Sum_probs=28.5

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPH   42 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~   42 (376)
                      .-||.|||+|..|...+..|+..   ++.=+.++|.|
T Consensus       327 ~~kVLIVGaGGLGs~va~~La~a---GVG~ItLvD~D  360 (598)
T 3vh1_A          327 NTKVLLLGAGTLGCYVSRALIAW---GVRKITFVDNG  360 (598)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTT---TCCEEEEECCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc---CCCEEEEECCC
Confidence            46899999999999999888886   67666788776

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=94.63  E-value=0.069  Score=48.49  Aligned_cols=89  Identities=11%  Similarity=0.034  Sum_probs=54.6

Q ss_pred             eeEEEEeCC-hhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCc--c--CCHHHHhh----CCCCCE
Q 017143            7 VKYGIIGMG-MMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKV--F--PGHQELLD----SGLCDV   77 (376)
Q Consensus         7 ~~v~iiG~G-~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~l~----~~~~D~   77 (376)
                      -+|.|+|+| .+|...+..++..   +.+++++ ++++++++.+++    +|.+ .+  +  .++.+.+.    ...+|+
T Consensus       146 ~~VlV~Ga~g~iG~~~~~~a~~~---Ga~Vi~~-~~~~~~~~~~~~----lga~-~~~~~~~~~~~~~~~~~~~~~g~Dv  216 (340)
T 3gms_A          146 DVLLVNACGSAIGHLFAQLSQIL---NFRLIAV-TRNNKHTEELLR----LGAA-YVIDTSTAPLYETVMELTNGIGADA  216 (340)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHH---TCEEEEE-ESSSTTHHHHHH----HTCS-EEEETTTSCHHHHHHHHTTTSCEEE
T ss_pred             CEEEEeCCccHHHHHHHHHHHHc---CCEEEEE-eCCHHHHHHHHh----CCCc-EEEeCCcccHHHHHHHHhCCCCCcE
Confidence            479999987 8998877766665   6787765 566665544444    4543 11  1  23333322    235899


Q ss_pred             EEEeCCCCccHHHHHHHHcCCCCCeEEEe
Q 017143           78 VVVSTPNMTHYQILMDIINHPKPHHVLVE  106 (376)
Q Consensus        78 V~i~t~~~~h~~~~~~al~~~~g~~Vl~E  106 (376)
                      |+-++....-.. +..+++. .|+-|++-
T Consensus       217 vid~~g~~~~~~-~~~~l~~-~G~iv~~G  243 (340)
T 3gms_A          217 AIDSIGGPDGNE-LAFSLRP-NGHFLTIG  243 (340)
T ss_dssp             EEESSCHHHHHH-HHHTEEE-EEEEEECC
T ss_pred             EEECCCChhHHH-HHHHhcC-CCEEEEEe
Confidence            999888654333 3467764 36666664

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=94.61  E-value=0.34  Score=45.72  Aligned_cols=89  Identities=16%  Similarity=0.114  Sum_probs=56.4

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC----C----------------
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP----G----------------   65 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~----~----------------   65 (376)
                      -+|.|+|+ |.+|...+..++..   +.+++++. +++++++    +++++|.+ .+++    +                
T Consensus       222 ~~VlV~GasG~iG~~a~qla~~~---Ga~vi~~~-~~~~~~~----~~~~lGa~-~~i~~~~~~~~~~~~~~~~~~~~~~  292 (447)
T 4a0s_A          222 DIVLIWGASGGLGSYAIQFVKNG---GGIPVAVV-SSAQKEA----AVRALGCD-LVINRAELGITDDIADDPRRVVETG  292 (447)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHT---TCEEEEEE-SSHHHHH----HHHHTTCC-CEEEHHHHTCCTTGGGCHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHc---CCEEEEEe-CCHHHHH----HHHhcCCC-EEEecccccccccccccccccchhh
Confidence            47999998 99999877666654   78888765 5666433    34566754 2222    1                


Q ss_pred             ---HHHHhh--CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEe
Q 017143           66 ---HQELLD--SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVE  106 (376)
Q Consensus        66 ---~~~~l~--~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~E  106 (376)
                         .+++.+  ...+|+|+-++.. .....+..+++.+ |+-|++-
T Consensus       293 ~~~~~~v~~~~g~g~Dvvid~~G~-~~~~~~~~~l~~~-G~iv~~G  336 (447)
T 4a0s_A          293 RKLAKLVVEKAGREPDIVFEHTGR-VTFGLSVIVARRG-GTVVTCG  336 (447)
T ss_dssp             HHHHHHHHHHHSSCCSEEEECSCH-HHHHHHHHHSCTT-CEEEESC
T ss_pred             hHHHHHHHHHhCCCceEEEECCCc-hHHHHHHHHHhcC-CEEEEEe
Confidence               111211  2359999998886 3566777788743 6666653

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=94.59  E-value=0.093  Score=50.36  Aligned_cols=89  Identities=20%  Similarity=0.143  Sum_probs=57.7

Q ss_pred             ceeEEEEeCChhhHH-HHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIGMGMMGRE-HFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~-~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      ..||.|||+|..|.. .+..|.+   .+.+|. ++|.....  ..+++ ++.|+++ .+..-.+.+.  ++|+|+++.--
T Consensus        22 ~~~v~viGiG~sG~s~~A~~l~~---~G~~V~-~~D~~~~~--~~~~l-~~~gi~~-~~g~~~~~~~--~~d~vV~Spgi   91 (494)
T 4hv4_A           22 VRHIHFVGIGGAGMGGIAEVLAN---EGYQIS-GSDLAPNS--VTQHL-TALGAQI-YFHHRPENVL--DASVVVVSTAI   91 (494)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHH---TTCEEE-EECSSCCH--HHHHH-HHTTCEE-ESSCCGGGGT--TCSEEEECTTS
T ss_pred             CCEEEEEEEcHhhHHHHHHHHHh---CCCeEE-EEECCCCH--HHHHH-HHCCCEE-ECCCCHHHcC--CCCEEEECCCC
Confidence            358999999999986 4555555   488877 57876542  23333 3458762 1222223343  38998887654


Q ss_pred             CccHHHHHHHHcCCCCCeEEEe
Q 017143           85 MTHYQILMDIINHPKPHHVLVE  106 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~~Vl~E  106 (376)
                      ....+.+.+|.+  +|.+|+-|
T Consensus        92 ~~~~p~~~~a~~--~gi~v~~~  111 (494)
T 4hv4_A           92 SADNPEIVAARE--ARIPVIRR  111 (494)
T ss_dssp             CTTCHHHHHHHH--TTCCEEEH
T ss_pred             CCCCHHHHHHHH--CCCCEEcH
Confidence            444566777888  89999976

>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A

Probab=94.54  E-value=0.097  Score=46.75  Aligned_cols=74  Identities=16%  Similarity=0.033  Sum_probs=51.5

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH-----HHHHHHHHhcCCCCCccCC-----HHHHhhCCCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSR-----QQALKLANAFDWPLKVFPG-----HQELLDSGLCD   76 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~-----~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~D   76 (376)
                      +||++.|++.++...+.+|...   +.++++|+...+.+.     ...+++|+++|+|+...++     +.+.|+..++|
T Consensus         1 mrivf~gt~~fa~~~L~~L~~~---~~~i~~Vvt~~d~~~g~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~l~~~~~D   77 (305)
T 2bln_A            1 MKTVVFAYHDMGCLGIEALLAA---GYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPD   77 (305)
T ss_dssp             CEEEEEECHHHHHHHHHHHHHT---TCEEEEEECCCC------CCCCHHHHHHHHTCCEECCSCCCSHHHHHHHHHTCCS
T ss_pred             CEEEEEEcCHHHHHHHHHHHHC---CCcEEEEEcCCCCCCCCcCccHHHHHHHHcCCCEECCCcCCcHHHHHHHHhcCCC
Confidence            5899999999888888887764   689999997533321     1267888899998322222     33555666799


Q ss_pred             EEEEeCC
Q 017143           77 VVVVSTP   83 (376)
Q Consensus        77 ~V~i~t~   83 (376)
                      +++++..
T Consensus        78 liv~~~y   84 (305)
T 2bln_A           78 VIFSFYY   84 (305)
T ss_dssp             EEEEESC
T ss_pred             EEEEecc
Confidence            9998875

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=94.50  E-value=0.14  Score=47.58  Aligned_cols=90  Identities=16%  Similarity=0.118  Sum_probs=56.0

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCc-EEEEEeCCChhhHHHHHHHHHhcCCCCCccC---CHHHHhh----CCCCCEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGV-SVVCIADPHLQSRQQALKLANAFDWPLKVFP---GHQELLD----SGLCDVV   78 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~-~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~----~~~~D~V   78 (376)
                      -+|.|+|+|.+|...+...+..   +. .++ ++++++++++    +++++|..+-.|+   ++.+.+.    ...+|+|
T Consensus       187 ~~VlV~GaG~vG~~aiqlAk~~---Ga~~Vi-~~~~~~~~~~----~a~~lGa~~i~~~~~~~~~~~v~~~t~g~g~Dvv  258 (398)
T 1kol_A          187 STVYVAGAGPVGLAAAASARLL---GAAVVI-VGDLNPARLA----HAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCA  258 (398)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCSEEE-EEESCHHHHH----HHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEE
T ss_pred             CEEEEECCcHHHHHHHHHHHHC---CCCeEE-EEcCCHHHHH----HHHHcCCcEEccCCcchHHHHHHHHhCCCCCCEE
Confidence            4799999999999877766654   66 455 4577777444    3445665411122   2333332    2358999


Q ss_pred             EEeCCCCc---------------cHHHHHHHHcCCCCCeEEE
Q 017143           79 VVSTPNMT---------------HYQILMDIINHPKPHHVLV  105 (376)
Q Consensus        79 ~i~t~~~~---------------h~~~~~~al~~~~g~~Vl~  105 (376)
                      +-++....               ....+.++++.+ |+-|++
T Consensus       259 id~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-G~iv~~  299 (398)
T 1kol_A          259 VDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVA-GKIGIP  299 (398)
T ss_dssp             EECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEE-EEEEEC
T ss_pred             EECCCCcccccccccccccchHHHHHHHHHHHhcC-CEEEEe
Confidence            99998652               467778888742 555554

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=94.48  E-value=0.12  Score=46.96  Aligned_cols=89  Identities=12%  Similarity=0.147  Sum_probs=56.4

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc---CCHHHHhh----CCCCCEE
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF---PGHQELLD----SGLCDVV   78 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~----~~~~D~V   78 (376)
                      -+|.|+|+ |.+|...+..++..   +.+++++ ++++++++.++    ++|.+ .++   .++.+.+.    ...+|+|
T Consensus       161 ~~VlV~Gasg~iG~~~~~~a~~~---Ga~Vi~~-~~~~~~~~~~~----~~ga~-~v~~~~~~~~~~v~~~~~~~g~Dvv  231 (342)
T 4eye_A          161 ETVLVLGAAGGIGTAAIQIAKGM---GAKVIAV-VNRTAATEFVK----SVGAD-IVLPLEEGWAKAVREATGGAGVDMV  231 (342)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHT---TCEEEEE-ESSGGGHHHHH----HHTCS-EEEESSTTHHHHHHHHTTTSCEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHc---CCEEEEE-eCCHHHHHHHH----hcCCc-EEecCchhHHHHHHHHhCCCCceEE
Confidence            47999998 99999877776665   7788765 45666544444    44544 111   34444333    2258999


Q ss_pred             EEeCCCCccHHHHHHHHcCCCCCeEEEe
Q 017143           79 VVSTPNMTHYQILMDIINHPKPHHVLVE  106 (376)
Q Consensus        79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~E  106 (376)
                      +-++... ....+..+++.+ |+-|++-
T Consensus       232 id~~g~~-~~~~~~~~l~~~-G~iv~~G  257 (342)
T 4eye_A          232 VDPIGGP-AFDDAVRTLASE-GRLLVVG  257 (342)
T ss_dssp             EESCC---CHHHHHHTEEEE-EEEEEC-
T ss_pred             EECCchh-HHHHHHHhhcCC-CEEEEEE
Confidence            9998864 567777888743 6666654

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=94.46  E-value=0.12  Score=47.78  Aligned_cols=40  Identities=20%  Similarity=0.385  Sum_probs=31.9

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHH
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQA   49 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~   49 (376)
                      ..+|+|+|+|.+|...+..++.+   +.+ |-++|+++++++.+
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~---Ga~-V~~~d~~~~~~~~~  211 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRL---GAV-VMATDVRAATKEQV  211 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT---TCE-EEEECSCSTTHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC---CCE-EEEEeCCHHHHHHH
Confidence            46899999999999988888776   677 55789998854443

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=94.35  E-value=0.11  Score=46.84  Aligned_cols=90  Identities=12%  Similarity=0.030  Sum_probs=58.2

Q ss_pred             eeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc----CCHHHHhh----CCCCCE
Q 017143            7 VKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF----PGHQELLD----SGLCDV   77 (376)
Q Consensus         7 ~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~----~~~~D~   77 (376)
                      -+|.|+| +|.+|...+..++..   +.+++++ ++++++++.+    +++|.+ ..+    .++.+.+.    ...+|+
T Consensus       142 ~~VlV~Ga~g~iG~~~~~~a~~~---Ga~Vi~~-~~~~~~~~~~----~~~Ga~-~~~~~~~~~~~~~~~~~~~~~g~Dv  212 (325)
T 3jyn_A          142 EIILFHAAAGGVGSLACQWAKAL---GAKLIGT-VSSPEKAAHA----KALGAW-ETIDYSHEDVAKRVLELTDGKKCPV  212 (325)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHH---TCEEEEE-ESSHHHHHHH----HHHTCS-EEEETTTSCHHHHHHHHTTTCCEEE
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHC---CCEEEEE-eCCHHHHHHH----HHcCCC-EEEeCCCccHHHHHHHHhCCCCceE
Confidence            4789999 799999887777765   6787765 5666654433    345543 121    23333322    235899


Q ss_pred             EEEeCCCCccHHHHHHHHcCCCCCeEEEec
Q 017143           78 VVVSTPNMTHYQILMDIINHPKPHHVLVEK  107 (376)
Q Consensus        78 V~i~t~~~~h~~~~~~al~~~~g~~Vl~EK  107 (376)
                      |+-++.. .....+..+++.+ |+-|++--
T Consensus       213 vid~~g~-~~~~~~~~~l~~~-G~iv~~g~  240 (325)
T 3jyn_A          213 VYDGVGQ-DTWLTSLDSVAPR-GLVVSFGN  240 (325)
T ss_dssp             EEESSCG-GGHHHHHTTEEEE-EEEEECCC
T ss_pred             EEECCCh-HHHHHHHHHhcCC-CEEEEEec
Confidence            9998886 5677778888743 66666643

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=94.34  E-value=0.21  Score=45.06  Aligned_cols=88  Identities=10%  Similarity=0.040  Sum_probs=57.7

Q ss_pred             eeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc----CCHHHHhh----CCCCCE
Q 017143            7 VKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF----PGHQELLD----SGLCDV   77 (376)
Q Consensus         7 ~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~----~~~~D~   77 (376)
                      -+|.|+| +|.+|...+..++..   +.+++++ ++++++++    +++++|.+ .++    .++.+.+.    ...+|+
T Consensus       150 ~~vlV~Ga~g~iG~~~~~~a~~~---Ga~Vi~~-~~~~~~~~----~~~~~ga~-~~~~~~~~~~~~~~~~~~~~~g~D~  220 (334)
T 3qwb_A          150 DYVLLFAAAGGVGLILNQLLKMK---GAHTIAV-ASTDEKLK----IAKEYGAE-YLINASKEDILRQVLKFTNGKGVDA  220 (334)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHT---TCEEEEE-ESSHHHHH----HHHHTTCS-EEEETTTSCHHHHHHHHTTTSCEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC---CCEEEEE-eCCHHHHH----HHHHcCCc-EEEeCCCchHHHHHHHHhCCCCceE
Confidence            4799999 799999877766664   7788765 56666433    44556654 221    23333322    235899


Q ss_pred             EEEeCCCCccHHHHHHHHcCCCCCeEEE
Q 017143           78 VVVSTPNMTHYQILMDIINHPKPHHVLV  105 (376)
Q Consensus        78 V~i~t~~~~h~~~~~~al~~~~g~~Vl~  105 (376)
                      |+-++.. .....+..+++.+ |+-|++
T Consensus       221 vid~~g~-~~~~~~~~~l~~~-G~iv~~  246 (334)
T 3qwb_A          221 SFDSVGK-DTFEISLAALKRK-GVFVSF  246 (334)
T ss_dssp             EEECCGG-GGHHHHHHHEEEE-EEEEEC
T ss_pred             EEECCCh-HHHHHHHHHhccC-CEEEEE
Confidence            9999886 6677788888743 665665

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=94.29  E-value=0.071  Score=48.61  Aligned_cols=87  Identities=6%  Similarity=0.012  Sum_probs=54.7

Q ss_pred             EEEE--eCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCc--c--CCHHHHhhC----CCCCEE
Q 017143            9 YGII--GMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKV--F--PGHQELLDS----GLCDVV   78 (376)
Q Consensus         9 v~ii--G~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~l~~----~~~D~V   78 (376)
                      ..+|  |+|.+|...+..++..   +.+++++ ++++++++.++    ++|.+ .+  +  .++.+.+.+    ..+|+|
T Consensus       167 ~vli~gg~g~vG~~a~qla~~~---Ga~Vi~~-~~~~~~~~~~~----~~Ga~-~~~~~~~~~~~~~v~~~~~~~g~D~v  237 (349)
T 3pi7_A          167 AFVMTAGASQLCKLIIGLAKEE---GFRPIVT-VRRDEQIALLK----DIGAA-HVLNEKAPDFEATLREVMKAEQPRIF  237 (349)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHH---TCEEEEE-ESCGGGHHHHH----HHTCS-EEEETTSTTHHHHHHHHHHHHCCCEE
T ss_pred             EEEEeCCCcHHHHHHHHHHHHC---CCEEEEE-eCCHHHHHHHH----HcCCC-EEEECCcHHHHHHHHHHhcCCCCcEE
Confidence            4555  8999999887777665   6788765 56666554444    45544 12  1  234333322    359999


Q ss_pred             EEeCCCCccHHHHHHHHcCCCCCeEEEe
Q 017143           79 VVSTPNMTHYQILMDIINHPKPHHVLVE  106 (376)
Q Consensus        79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~E  106 (376)
                      +-++.... ...+.++++. .|+-|++-
T Consensus       238 id~~g~~~-~~~~~~~l~~-~G~iv~~G  263 (349)
T 3pi7_A          238 LDAVTGPL-ASAIFNAMPK-RARWIIYG  263 (349)
T ss_dssp             EESSCHHH-HHHHHHHSCT-TCEEEECC
T ss_pred             EECCCChh-HHHHHhhhcC-CCEEEEEe
Confidence            99887543 4667788875 36666663

>1gr0_A Inositol-3-phosphate synthase; isomerase, oxidoreductase, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: NAD; 1.95A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3

Probab=94.28  E-value=0.51  Score=42.60  Aligned_cols=141  Identities=13%  Similarity=0.062  Sum_probs=83.4

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhc--------------------CCCcEEEEEeCCChhhHHHHHHHH--HhcCC----
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLR--------------------SQGVSVVCIADPHLQSRQQALKLA--NAFDW----   58 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~--------------------~~~~~~~~v~d~~~~~~~~~~~~~--~~~~~----   58 (376)
                      .++||||||.|+.|...+..+...+                    ..++++++.+|.|+.+..+.-.-+  .+.+.    
T Consensus        14 ~~~rVaIVGvGN~GsaLv~Gi~~yk~~~~~~~~~Gl~~~~~g~~~~~Di~iVaafDId~~KVG~~l~~A~~~~~n~~~~~   93 (367)
T 1gr0_A           14 TEVRVAIVGVGNCASSLVQGVEYYYNADDTSTVPGLMHVRFGPYHVRDVKFVAAFDVDAKKVGFDLSDAIFASENNTIKI   93 (367)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTTCCTTSCCTTCSCSEETTEEGGGEEEEEEEECBTTTTTSBHHHHTTSTTCCCCCC
T ss_pred             cCCCEEEECcChHHHHHHHHHHHHhccCcccccCCccccccCCccCCCeEEEEEEcCChHHHHHHhhCCEecCCCchhhh
Confidence            4799999999999987766443331                    248899999999998653221111  11121    


Q ss_pred             ---C----------------------C----CccCCHHHHhhCCCCCEEEEeCCCCcc---HHHHHHHHcCCCCCeEEEe
Q 017143           59 ---P----------------------L----KVFPGHQELLDSGLCDVVVVSTPNMTH---YQILMDIINHPKPHHVLVE  106 (376)
Q Consensus        59 ---~----------------------~----~~~~~~~~~l~~~~~D~V~i~t~~~~h---~~~~~~al~~~~g~~Vl~E  106 (376)
                         +                      +    ..-.|+.+++++..+|+|+...|....   .-+|..||+  +|.+-.-=
T Consensus        94 ~~v~~~~v~v~~g~~ldgia~~~~~~i~~s~~~~~Di~~~~~~~~~dVvV~~lp~gs~~aS~~YA~Aal~--ag~~fvN~  171 (367)
T 1gr0_A           94 ADVAPTNVIVQRGPTLDGIGKYYADTIELSDAEPVDVVQALKEAKVDVLVSYLPVGSEEADKFYAQCAID--AGVAFVNA  171 (367)
T ss_dssp             SCCCCCCCBCEECCCTTSCCHHHHTTSCBCSSCCCCHHHHHHHTTCSEEEECCCTTCHHHHHHHHHHHHH--HTCEEEEC
T ss_pred             hcccccCceEccCCCCCchhhhhhhccccccchhhHHHHHHHHhCCcEEEEeeeCCCcCHHHHHHHHHHH--cCCceEec
Confidence               0                      0    012257778887889966666665432   223567888  77888777


Q ss_pred             cCCCCC-HHHHHHHHHHHHhCCCeEEEEeeccc--c--CHHHHHHHHHHHc
Q 017143          107 KPLCTT-VADCKKVVDAARKRPDILVQVGLEYR--Y--MPPVAKLIQIVKS  152 (376)
Q Consensus       107 KP~a~~-~~e~~~l~~~a~~~~~~~~~v~~~~r--~--~p~~~~~k~~i~~  152 (376)
                      -|...- ..+   +.+++++ .|++ ..|-...  .  ...-..+-+++.+
T Consensus       172 ~P~~~~~~P~---~~el~~~-~g~p-i~GdD~Ksq~G~T~~k~~La~~l~~  217 (367)
T 1gr0_A          172 LPVFIASDPV---WAKKFTD-ARVP-IVGDDIKSQVGATITHRVLAKLFED  217 (367)
T ss_dssp             SSCCSTTSHH---HHHHHHH-HTCE-EEESSBCCSSCHHHHHHHHHHHHHH
T ss_pred             CCccccCCHH---HHHHHHH-cCCC-EeccccccccCCChHHHHHHHHHHH
Confidence            775432 344   5566633 3655 4555555  2  2233344455544

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=94.28  E-value=0.093  Score=47.79  Aligned_cols=131  Identities=13%  Similarity=0.080  Sum_probs=78.8

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCc-EEEEEeCCChhhHHHHHHHHHhcCCCCCc--c--CCHHHHhh----CCCCCE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGV-SVVCIADPHLQSRQQALKLANAFDWPLKV--F--PGHQELLD----SGLCDV   77 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~-~~~~v~d~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~l~----~~~~D~   77 (376)
                      -+|.|+|+|.+|...+..++..   +. ++++ +++++++++.+    +++|.+ .+  +  .++.+.+.    ...+|+
T Consensus       169 ~~VlV~GaG~vG~~~~q~a~~~---Ga~~Vi~-~~~~~~~~~~~----~~~Ga~-~~~~~~~~~~~~~v~~~~~g~g~D~  239 (348)
T 2d8a_A          169 KSVLITGAGPLGLLGIAVAKAS---GAYPVIV-SEPSDFRRELA----KKVGAD-YVINPFEEDVVKEVMDITDGNGVDV  239 (348)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT---TCCSEEE-ECSCHHHHHHH----HHHTCS-EEECTTTSCHHHHHHHHTTTSCEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHc---CCCEEEE-ECCCHHHHHHH----HHhCCC-EEECCCCcCHHHHHHHHcCCCCCCE
Confidence            3799999999999887766665   66 7665 56777644433    355644 22  1  24443332    235899


Q ss_pred             EEEeCCCCccHHHHHHHHcCCCCCeEEEe---cCCCCCHHHHHHHHHHHHhCCCeEEEEeecccc-CHHHHHHHHHHHcC
Q 017143           78 VVVSTPNMTHYQILMDIINHPKPHHVLVE---KPLCTTVADCKKVVDAARKRPDILVQVGLEYRY-MPPVAKLIQIVKSG  153 (376)
Q Consensus        78 V~i~t~~~~h~~~~~~al~~~~g~~Vl~E---KP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~-~p~~~~~k~~i~~g  153 (376)
                      |+.++........+.++++. .|+-|++-   .+...+..     .... .+ ++.+ .+...+. ...+..+.+++++|
T Consensus       240 vid~~g~~~~~~~~~~~l~~-~G~iv~~g~~~~~~~~~~~-----~~~~-~~-~~~i-~g~~~~~~~~~~~~~~~l~~~g  310 (348)
T 2d8a_A          240 FLEFSGAPKALEQGLQAVTP-AGRVSLLGLYPGKVTIDFN-----NLII-FK-ALTI-YGITGRHLWETWYTVSRLLQSG  310 (348)
T ss_dssp             EEECSCCHHHHHHHHHHEEE-EEEEEECCCCSSCCCCCHH-----HHTT-TT-TCEE-EECCCCCSHHHHHHHHHHHHHT
T ss_pred             EEECCCCHHHHHHHHHHHhc-CCEEEEEccCCCCcccCch-----HHHH-hC-CcEE-EEecCCCcHHHHHHHHHHHHcC
Confidence            99999876667777888873 25555543   23333320     1222 22 4444 3433333 45678888999988


Q ss_pred             CC
Q 017143          154 SI  155 (376)
Q Consensus       154 ~i  155 (376)
                      ++
T Consensus       311 ~i  312 (348)
T 2d8a_A          311 KL  312 (348)
T ss_dssp             CC
T ss_pred             CC
Confidence            74

>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}

Probab=94.24  E-value=0.16  Score=42.60  Aligned_cols=87  Identities=13%  Similarity=0.129  Sum_probs=51.1

Q ss_pred             ceeEEEEeCChhhHH---HHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCc-----cCC-------HHHHh
Q 017143            6 TVKYGIIGMGMMGRE---HFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKV-----FPG-------HQELL   70 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~---~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~-----~~~-------~~~~l   70 (376)
                      |+||+|...|. |..   .+.+.+.. .-..++++|+...++.  ...+.|+++|+|+..     |.+       +.+.|
T Consensus         2 m~riavl~Sg~-Gsnl~ali~~~~~~-~l~~eI~~Visn~~~a--~v~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l   77 (211)
T 3p9x_A            2 MKRVAIFASGS-GTNAEAIIQSQKAG-QLPCEVALLITDKPGA--KVVERVKVHEIPVCALDPKTYPSKEAYEIEVVQQL   77 (211)
T ss_dssp             -CEEEEECCTT-CHHHHHHHHHHHTT-CCSSEEEEEEESCSSS--HHHHHHHTTTCCEEECCGGGSSSHHHHHHHHHHHH
T ss_pred             CCEEEEEEeCC-chHHHHHHHHHHcC-CCCcEEEEEEECCCCc--HHHHHHHHcCCCEEEeChhhcCchhhhHHHHHHHH
Confidence            47899998885 432   22222221 1246888888654432  567889999998322     222       23445


Q ss_pred             hCCCCCEEEEeCCCCccHHHHHHHHc
Q 017143           71 DSGLCDVVVVSTPNMTHYQILMDIIN   96 (376)
Q Consensus        71 ~~~~~D~V~i~t~~~~h~~~~~~al~   96 (376)
                      +..++|+++++.-...=.+-++...+
T Consensus        78 ~~~~~Dliv~agy~~Il~~~~l~~~~  103 (211)
T 3p9x_A           78 KEKQIDFVVLAGYMRLVGPTLLGAYE  103 (211)
T ss_dssp             HHTTCCEEEESSCCSCCCHHHHHHHT
T ss_pred             HhcCCCEEEEeCchhhcCHHHHhhcc
Confidence            56679999998865443344444444

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=94.22  E-value=0.1  Score=48.02  Aligned_cols=136  Identities=15%  Similarity=0.214  Sum_probs=77.3

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCc--cCCHHHHhhC--CCCCEEEEeC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKV--FPGHQELLDS--GLCDVVVVST   82 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~--~~~D~V~i~t   82 (376)
                      -+|.|+|+|.+|...+..++..   +.++++ +++++++++.++    ++|.+ .+  +.+- +.++.  ..+|+|+.++
T Consensus       196 ~~VlV~GaG~vG~~aiqlak~~---Ga~Vi~-~~~~~~~~~~a~----~lGa~-~vi~~~~~-~~~~~~~~g~Dvvid~~  265 (369)
T 1uuf_A          196 KKVGVVGIGGLGHMGIKLAHAM---GAHVVA-FTTSEAKREAAK----ALGAD-EVVNSRNA-DEMAAHLKSFDFILNTV  265 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCEEEE-EESSGGGHHHHH----HHTCS-EEEETTCH-HHHHTTTTCEEEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHHC---CCEEEE-EeCCHHHHHHHH----HcCCc-EEeccccH-HHHHHhhcCCCEEEECC
Confidence            4799999999998877666554   778665 556776544443    45654 22  2332 22221  3589999999


Q ss_pred             CCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCce
Q 017143           83 PNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQV  158 (376)
Q Consensus        83 ~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i  158 (376)
                      ......+.+.++++. .|+-|++--+-. .... ..+.... .+ ++.+. +........+..+.+++++|++-..
T Consensus       266 g~~~~~~~~~~~l~~-~G~iv~~G~~~~-~~~~-~~~~~~~-~~-~~~i~-g~~~~~~~~~~~~~~l~~~g~i~~~  335 (369)
T 1uuf_A          266 AAPHNLDDFTTLLKR-DGTMTLVGAPAT-PHKS-PEVFNLI-MK-RRAIA-GSMIGGIPETQEMLDFCAEHGIVAD  335 (369)
T ss_dssp             SSCCCHHHHHTTEEE-EEEEEECCCC---------CHHHHH-TT-TCEEE-ECCSCCHHHHHHHHHHHHHHTCCCC
T ss_pred             CCHHHHHHHHHHhcc-CCEEEEeccCCC-Cccc-cCHHHHH-hC-CcEEE-EeecCCHHHHHHHHHHHHhCCCCcc
Confidence            877677788888874 255555433211 0001 1122233 33 44443 3222222456777888888877543

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=94.19  E-value=0.12  Score=47.47  Aligned_cols=42  Identities=17%  Similarity=0.241  Sum_probs=34.1

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHH
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALK   51 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~   51 (376)
                      ..||+|||+|.+|...+..+..+   +.+|+ ++|+++++++.+++
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~l---Ga~V~-v~D~~~~~l~~~~~  225 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKRL---GAKTT-GYDVRPEVAEQVRS  225 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHH---TCEEE-EECSSGGGHHHHHH
T ss_pred             CCEEEEECchHHHHHHHHHHHHC---CCEEE-EEeCCHHHHHHHHH
Confidence            46999999999999988888887   67755 79999986555544

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=94.16  E-value=0.099  Score=44.58  Aligned_cols=33  Identities=18%  Similarity=0.193  Sum_probs=26.7

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADP   41 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~   41 (376)
                      .++||+|||+|.||......|.+.   +.+|++ +++
T Consensus         5 ~~mkI~IIG~G~~G~sLA~~L~~~---G~~V~~-~~~   37 (232)
T 3dfu_A            5 PRLRVGIFDDGSSTVNMAEKLDSV---GHYVTV-LHA   37 (232)
T ss_dssp             CCCEEEEECCSCCCSCHHHHHHHT---TCEEEE-CSS
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHHC---CCEEEE-ecC
Confidence            357999999999999888888875   778775 454

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=94.15  E-value=0.12  Score=47.32  Aligned_cols=132  Identities=12%  Similarity=0.092  Sum_probs=76.3

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc--CC-HHHHhh----CCCCCEEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF--PG-HQELLD----SGLCDVVV   79 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~l~----~~~~D~V~   79 (376)
                      -+|.|+|+|.+|...+...+..  .+.++++ .++++++++    +++++|.+ .++  ++ +.+.+.    ...+|+|+
T Consensus       188 ~~VlV~GaG~vG~~avqlak~~--~Ga~Vi~-~~~~~~~~~----~~~~lGa~-~vi~~~~~~~~~v~~~~~g~g~Dvvi  259 (359)
T 1h2b_A          188 AYVAIVGVGGLGHIAVQLLKVM--TPATVIA-LDVKEEKLK----LAERLGAD-HVVDARRDPVKQVMELTRGRGVNVAM  259 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH--CCCEEEE-EESSHHHHH----HHHHTTCS-EEEETTSCHHHHHHHHTTTCCEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHc--CCCeEEE-EeCCHHHHH----HHHHhCCC-EEEeccchHHHHHHHHhCCCCCcEEE
Confidence            4799999999998877666554  3778775 456666433    34466754 222  22 222222    12589999


Q ss_pred             EeCCCCc--cHHHHHHHHcCCCCCeEEEecCC--CCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCC
Q 017143           80 VSTPNMT--HYQILMDIINHPKPHHVLVEKPL--CTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSI  155 (376)
Q Consensus        80 i~t~~~~--h~~~~~~al~~~~g~~Vl~EKP~--a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~i  155 (376)
                      -++....  ..+.+.++ .  .|+-|++--+.  ..+..      ... .+ ++.+. +........+..+.+++++|++
T Consensus       260 d~~G~~~~~~~~~~~~~-~--~G~~v~~g~~~~~~~~~~------~~~-~~-~~~i~-g~~~~~~~~~~~~~~l~~~g~l  327 (359)
T 1h2b_A          260 DFVGSQATVDYTPYLLG-R--MGRLIIVGYGGELRFPTI------RVI-SS-EVSFE-GSLVGNYVELHELVTLALQGKV  327 (359)
T ss_dssp             ESSCCHHHHHHGGGGEE-E--EEEEEECCCSSCCCCCHH------HHH-HT-TCEEE-ECCSCCHHHHHHHHHHHHTTSC
T ss_pred             ECCCCchHHHHHHHhhc-C--CCEEEEEeCCCCCCCCHH------HHH-hC-CcEEE-EecCCCHHHHHHHHHHHHcCCC
Confidence            9998654  44444555 5  57667664332  22222      233 23 44443 3222223457788888888887


Q ss_pred             Cce
Q 017143          156 GQV  158 (376)
Q Consensus       156 G~i  158 (376)
                      -.+
T Consensus       328 ~~~  330 (359)
T 1h2b_A          328 RVE  330 (359)
T ss_dssp             CCC
T ss_pred             cce
Confidence            543

>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*

Probab=94.09  E-value=0.23  Score=45.75  Aligned_cols=87  Identities=10%  Similarity=0.175  Sum_probs=65.7

Q ss_pred             hhHHHHHHHHHhcCCC--CCccC--CHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHH
Q 017143           44 QSRQQALKLANAFDWP--LKVFP--GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKV  119 (376)
Q Consensus        44 ~~~~~~~~~~~~~~~~--~~~~~--~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l  119 (376)
                      +......+.++++|++  ...++  +. +++.+. +|++-|++.+-...++..++-+  .||+|++-+++..+++|....
T Consensus       193 egl~~L~~~~~~~Gl~~~te~~d~~~~-~~l~~~-vd~lkIgs~~~~n~~LL~~~a~--~gkPVilk~G~~~t~~e~~~A  268 (385)
T 3nvt_A          193 EGLKILKRVSDEYGLGVISEIVTPADI-EVALDY-VDVIQIGARNMQNFELLKAAGR--VDKPILLKRGLSATIEEFIGA  268 (385)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECCSGGGH-HHHTTT-CSEEEECGGGTTCHHHHHHHHT--SSSCEEEECCTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCEEEEecCCHHHH-HHHHhh-CCEEEECcccccCHHHHHHHHc--cCCcEEEecCCCCCHHHHHHH
Confidence            4445667788889998  23333  33 444454 9999999999999999999999  899999999999999999888


Q ss_pred             HHHHHhCCCeEEEEe
Q 017143          120 VDAARKRPDILVQVG  134 (376)
Q Consensus       120 ~~~a~~~~~~~~~v~  134 (376)
                      ++.....++-.+.+.
T Consensus       269 ve~i~~~Gn~~i~L~  283 (385)
T 3nvt_A          269 AEYIMSQGNGKIILC  283 (385)
T ss_dssp             HHHHHTTTCCCEEEE
T ss_pred             HHHHHHcCCCeEEEE
Confidence            888754433333333

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=94.07  E-value=0.17  Score=45.97  Aligned_cols=132  Identities=11%  Similarity=0.113  Sum_probs=79.2

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCc--c--CCHHHHhh----CCCCCE
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKV--F--PGHQELLD----SGLCDV   77 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~l~----~~~~D~   77 (376)
                      -+|.|+|+ |.+|...+..++..   +.++++ +++++++++.++    ++|.. ..  +  .++.+.+.    ...+|+
T Consensus       168 ~~vlV~Gasg~iG~~~~~~a~~~---G~~Vi~-~~~~~~~~~~~~----~~ga~-~~~d~~~~~~~~~~~~~~~~~~~d~  238 (343)
T 2eih_A          168 DDVLVMAAGSGVSVAAIQIAKLF---GARVIA-TAGSEDKLRRAK----ALGAD-ETVNYTHPDWPKEVRRLTGGKGADK  238 (343)
T ss_dssp             CEEEECSTTSTTHHHHHHHHHHT---TCEEEE-EESSHHHHHHHH----HHTCS-EEEETTSTTHHHHHHHHTTTTCEEE
T ss_pred             CEEEEECCCchHHHHHHHHHHHC---CCEEEE-EeCCHHHHHHHH----hcCCC-EEEcCCcccHHHHHHHHhCCCCceE
Confidence            57999998 89999877776665   678776 467776544443    34543 11  1  23333332    235899


Q ss_pred             EEEeCCCCccHHHHHHHHcCCCCCeEEEecCC----CCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcC
Q 017143           78 VVVSTPNMTHYQILMDIINHPKPHHVLVEKPL----CTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSG  153 (376)
Q Consensus        78 V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~----a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g  153 (376)
                      |+.++. ......+.++++. .|+-|++--+.    ..+.      .... .+ ++.+ .+........+..+.+++++|
T Consensus       239 vi~~~g-~~~~~~~~~~l~~-~G~~v~~g~~~~~~~~~~~------~~~~-~~-~~~~-~g~~~~~~~~~~~~~~l~~~g  307 (343)
T 2eih_A          239 VVDHTG-ALYFEGVIKATAN-GGRIAIAGASSGYEGTLPF------AHVF-YR-QLSI-LGSTMASKSRLFPILRFVEEG  307 (343)
T ss_dssp             EEESSC-SSSHHHHHHHEEE-EEEEEESSCCCSCCCCCCT------THHH-HT-TCEE-EECCSCCGGGHHHHHHHHHHT
T ss_pred             EEECCC-HHHHHHHHHhhcc-CCEEEEEecCCCCcCccCH------HHHH-hC-CcEE-EEecCccHHHHHHHHHHHHcC
Confidence            999998 6667788888874 36656554322    1222      1222 22 4443 343333345678888999988


Q ss_pred             CCCce
Q 017143          154 SIGQV  158 (376)
Q Consensus       154 ~iG~i  158 (376)
                      ++-.+
T Consensus       308 ~l~~~  312 (343)
T 2eih_A          308 KLKPV  312 (343)
T ss_dssp             SSCCC
T ss_pred             CCCCc
Confidence            87543

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=94.05  E-value=0.19  Score=45.92  Aligned_cols=35  Identities=23%  Similarity=0.343  Sum_probs=28.5

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL   43 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~   43 (376)
                      .-||.|||+|..|...+..|...   ++.-+.++|.|.
T Consensus       118 ~~~VlvvG~GglGs~va~~La~a---Gvg~i~lvD~D~  152 (353)
T 3h5n_A          118 NAKVVILGCGGIGNHVSVILATS---GIGEIILIDNDQ  152 (353)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHH---TCSEEEEEECCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC---CCCeEEEECCCc
Confidence            46899999999999988888886   666666888764

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=94.01  E-value=0.21  Score=45.30  Aligned_cols=76  Identities=12%  Similarity=0.155  Sum_probs=47.1

Q ss_pred             CCCceeEEEEeC-ChhhHHHHHHhhhhcCCCc-----EEEEEeCCChhhHHHHHHHHH---hcCCC----CCccCCHHHH
Q 017143            3 ANDTVKYGIIGM-GMMGREHFINLHHLRSQGV-----SVVCIADPHLQSRQQALKLAN---AFDWP----LKVFPGHQEL   69 (376)
Q Consensus         3 ~~~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~-----~~~~v~d~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~   69 (376)
                      +|+++||+|+|+ |.+|...+..++..  +-+     .-+.++|..+... +++-++.   ...++    +...++..+.
T Consensus        21 s~~~vKVaViGAaG~IG~~la~~la~~--~l~~~~~~~eL~L~Di~~~~~-~~~Gva~DL~~~~~~~~~~~~~~~~~~~a   97 (345)
T 4h7p_A           21 SMSAVKVAVTGAAGQIGYALVPLIARG--ALLGPTTPVELRLLDIEPALK-ALAGVEAELEDCAFPLLDKVVVTADPRVA   97 (345)
T ss_dssp             -CCCEEEEEESTTSHHHHHHHHHHHHT--TTTCTTCCEEEEEECCGGGHH-HHHHHHHHHHHTTCTTEEEEEEESCHHHH
T ss_pred             CCCCCEEEEECcCcHHHHHHHHHHHhc--cccCCCCccEEEEECCCCccc-cchhhhhhhhhcCccCCCcEEEcCChHHH
Confidence            456799999996 99999877766654  222     2355889876421 2222221   11222    2345677777


Q ss_pred             hhCCCCCEEEEeCC
Q 017143           70 LDSGLCDVVVVSTP   83 (376)
Q Consensus        70 l~~~~~D~V~i~t~   83 (376)
                      +++  .|+|+|+.-
T Consensus        98 ~~~--advVvi~aG  109 (345)
T 4h7p_A           98 FDG--VAIAIMCGA  109 (345)
T ss_dssp             TTT--CSEEEECCC
T ss_pred             hCC--CCEEEECCC
Confidence            776  899999874

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=93.99  E-value=0.12  Score=46.93  Aligned_cols=133  Identities=11%  Similarity=0.091  Sum_probs=75.7

Q ss_pred             eeEEEEeCC-hhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCc--c--CCH----HHHhhCCCCCE
Q 017143            7 VKYGIIGMG-MMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKV--F--PGH----QELLDSGLCDV   77 (376)
Q Consensus         7 ~~v~iiG~G-~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~--~--~~~----~~~l~~~~~D~   77 (376)
                      -+|.|+|+| .+|...+..++..  .+.++++ +++++++++.++    ++|.+ ..  +  .++    .++.....+|+
T Consensus       172 ~~vlV~Gagg~iG~~~~~~a~~~--~Ga~Vi~-~~~~~~~~~~~~----~~g~~-~~~~~~~~~~~~~~~~~~~~~~~d~  243 (347)
T 1jvb_A          172 KTLLVVGAGGGLGTMAVQIAKAV--SGATIIG-VDVREEAVEAAK----RAGAD-YVINASMQDPLAEIRRITESKGVDA  243 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHH--TCCEEEE-EESSHHHHHHHH----HHTCS-EEEETTTSCHHHHHHHHTTTSCEEE
T ss_pred             CEEEEECCCccHHHHHHHHHHHc--CCCeEEE-EcCCHHHHHHHH----HhCCC-EEecCCCccHHHHHHHHhcCCCceE
Confidence            479999998 8998877766654  3778664 567776544443    44543 11  1  122    22222135899


Q ss_pred             EEEeCCCCccHHHHHHHHcCCCCCeEEEecCC---CCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCC
Q 017143           78 VVVSTPNMTHYQILMDIINHPKPHHVLVEKPL---CTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGS  154 (376)
Q Consensus        78 V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~---a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~  154 (376)
                      |+-++......+.+.++++. .|+-|++--+-   ..+..      ... .+ ++.+. +........+..+.+++++|+
T Consensus       244 vi~~~g~~~~~~~~~~~l~~-~G~iv~~g~~~~~~~~~~~------~~~-~~-~~~i~-g~~~~~~~~~~~~~~l~~~g~  313 (347)
T 1jvb_A          244 VIDLNNSEKTLSVYPKALAK-QGKYVMVGLFGADLHYHAP------LIT-LS-EIQFV-GSLVGNQSDFLGIMRLAEAGK  313 (347)
T ss_dssp             EEESCCCHHHHTTGGGGEEE-EEEEEECCSSCCCCCCCHH------HHH-HH-TCEEE-ECCSCCHHHHHHHHHHHHTTS
T ss_pred             EEECCCCHHHHHHHHHHHhc-CCEEEEECCCCCCCCCCHH------HHH-hC-ceEEE-EEeccCHHHHHHHHHHHHcCC
Confidence            99998876556666677763 25555553222   33332      222 12 33333 322222346778888888888


Q ss_pred             CCc
Q 017143          155 IGQ  157 (376)
Q Consensus       155 iG~  157 (376)
                      +-.
T Consensus       314 l~~  316 (347)
T 1jvb_A          314 VKP  316 (347)
T ss_dssp             SCC
T ss_pred             CCc
Confidence            743

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=93.96  E-value=0.33  Score=44.57  Aligned_cols=140  Identities=13%  Similarity=0.103  Sum_probs=75.3

Q ss_pred             eeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc----CCHHHHh-hCCCCCEEEE
Q 017143            7 VKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF----PGHQELL-DSGLCDVVVV   80 (376)
Q Consensus         7 ~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l-~~~~~D~V~i   80 (376)
                      -+|.|+| +|.+|...+..++..   +.++++++  ++++++    +++++|.+ .++    .++.+.+ +...+|+|+-
T Consensus       185 ~~VlV~Ga~G~vG~~~~qla~~~---Ga~Vi~~~--~~~~~~----~~~~lGa~-~v~~~~~~~~~~~~~~~~g~D~vid  254 (375)
T 2vn8_A          185 KRVLILGASGGVGTFAIQVMKAW---DAHVTAVC--SQDASE----LVRKLGAD-DVIDYKSGSVEEQLKSLKPFDFILD  254 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT---TCEEEEEE--CGGGHH----HHHHTTCS-EEEETTSSCHHHHHHTSCCBSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC---CCEEEEEe--ChHHHH----HHHHcCCC-EEEECCchHHHHHHhhcCCCCEEEE
Confidence            4799999 799999877666654   67888776  344333    34566755 222    2343333 3346899999


Q ss_pred             eCCCC-ccHHHHHHHHcCCCCCeEEEecCCCCCHHH----H------HHHHHH-H-H-hCCCeEEEEeeccccCHHHHHH
Q 017143           81 STPNM-THYQILMDIINHPKPHHVLVEKPLCTTVAD----C------KKVVDA-A-R-KRPDILVQVGLEYRYMPPVAKL  146 (376)
Q Consensus        81 ~t~~~-~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e----~------~~l~~~-a-~-~~~~~~~~v~~~~r~~p~~~~~  146 (376)
                      ++... .-...+.++++. .|+-|++--+...+...    .      ..+... . . .. +..+...+.......+..+
T Consensus       255 ~~g~~~~~~~~~~~~l~~-~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~  332 (375)
T 2vn8_A          255 NVGGSTETWAPDFLKKWS-GATYVTLVTPFLLNMDRLGIADGMLQTGVTVGSKALKHFWK-GVHYRWAFFMASGPCLDDI  332 (375)
T ss_dssp             SSCTTHHHHGGGGBCSSS-CCEEEESCCSHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCEEEECCCCCCHHHHHHH
T ss_pred             CCCChhhhhHHHHHhhcC-CcEEEEeCCCcccccccccccchhheeehhhcccccccccc-CcceEEEEeCCCHHHHHHH
Confidence            99865 333445555663 36555554322100100    0      011111 0 0 02 4443322222122346888


Q ss_pred             HHHHHcCCCCce
Q 017143          147 IQIVKSGSIGQV  158 (376)
Q Consensus       147 k~~i~~g~iG~i  158 (376)
                      .+++++|.|-.+
T Consensus       333 ~~l~~~g~l~~~  344 (375)
T 2vn8_A          333 AELVDAGKIRPV  344 (375)
T ss_dssp             HHHHHTTSCCCC
T ss_pred             HHHHHCCCcccC
Confidence            899999888543

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=93.93  E-value=0.31  Score=44.35  Aligned_cols=35  Identities=23%  Similarity=0.265  Sum_probs=29.2

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL   43 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~   43 (376)
                      .-+|.|||+|..|...+..|...   ++.-+.++|.+.
T Consensus        36 ~~~VlivG~GGlG~~ia~~La~~---Gvg~itlvD~d~   70 (346)
T 1y8q_A           36 ASRVLLVGLKGLGAEIAKNLILA---GVKGLTMLDHEQ   70 (346)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHH---TCSEEEEECCCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc---CCCEEEEEECCC
Confidence            46899999999999999998886   676666888765

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=93.92  E-value=0.18  Score=46.98  Aligned_cols=40  Identities=25%  Similarity=0.309  Sum_probs=31.9

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHH
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQA   49 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~   49 (376)
                      ..+|+|||+|.+|...+..++.+   +.+ +-++|+++++++.+
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~---Ga~-V~v~D~~~~~~~~~  211 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSL---GAI-VRAFDTRPEVKEQV  211 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT---TCE-EEEECSCGGGHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC---CCE-EEEEcCCHHHHHHH
Confidence            46899999999999988888876   566 45789998865444

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=93.88  E-value=0.23  Score=46.03  Aligned_cols=42  Identities=21%  Similarity=0.343  Sum_probs=33.6

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHH
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALK   51 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~   51 (376)
                      ..||+|||+|.+|...+..+..+   +.+|+ ++|+++++++.+++
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~l---Ga~V~-v~D~~~~~l~~~~~  231 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRL---GAVVS-ATDVRPAAKEQVAS  231 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT---TCEEE-EECSSTTHHHHHHH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC---CCEEE-EEcCCHHHHHHHHH
Confidence            57999999999999988888876   67755 79999986554443

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=93.79  E-value=0.34  Score=41.06  Aligned_cols=71  Identities=15%  Similarity=0.137  Sum_probs=47.3

Q ss_pred             CceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCC-C---CCccCCHHHHhhCCCCCEEE
Q 017143            5 DTVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDW-P---LKVFPGHQELLDSGLCDVVV   79 (376)
Q Consensus         5 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~l~~~~~D~V~   79 (376)
                      +.++|.|.|+ |++|...+..|.+.   +.+|++ ++|++++.   .++.. .++ .   ....+++.+++..  +|+|+
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~---G~~V~~-~~R~~~~~---~~~~~-~~~~~~~~~Dl~~~~~~~~~~--~D~vi   89 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNK---GHEPVA-MVRNEEQG---PELRE-RGASDIVVANLEEDFSHAFAS--IDAVV   89 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHT---TCEEEE-EESSGGGH---HHHHH-TTCSEEEECCTTSCCGGGGTT--CSEEE
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhC---CCeEEE-EECChHHH---HHHHh-CCCceEEEcccHHHHHHHHcC--CCEEE
Confidence            4579999996 99999999888875   778775 46777743   33332 133 1   0122566677764  99999


Q ss_pred             EeCCCC
Q 017143           80 VSTPNM   85 (376)
Q Consensus        80 i~t~~~   85 (376)
                      .+....
T Consensus        90 ~~ag~~   95 (236)
T 3e8x_A           90 FAAGSG   95 (236)
T ss_dssp             ECCCCC
T ss_pred             ECCCCC
Confidence            887643

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=93.77  E-value=0.11  Score=50.30  Aligned_cols=92  Identities=13%  Similarity=0.047  Sum_probs=57.5

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ..+|-+||.|.+|..-+..+...  .+.+|. ++|...... ..+++. +.|+++..-.+.+.+..  ++|+|+++.--.
T Consensus        19 ~~~i~~iGiGg~Gms~lA~~l~~--~G~~V~-~sD~~~~~~-~~~~L~-~~gi~~~~G~~~~~~~~--~~d~vV~Spgi~   91 (524)
T 3hn7_A           19 GMHIHILGICGTFMGSLALLARA--LGHTVT-GSDANIYPP-MSTQLE-QAGVTIEEGYLIAHLQP--APDLVVVGNAMK   91 (524)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH--TTCEEE-EEESCCCTT-HHHHHH-HTTCEEEESCCGGGGCS--CCSEEEECTTCC
T ss_pred             CCEEEEEEecHhhHHHHHHHHHh--CCCEEE-EECCCCCcH-HHHHHH-HCCCEEECCCCHHHcCC--CCCEEEECCCcC
Confidence            46899999999998755554444  588866 578754211 223333 45776211123344433  389888875544


Q ss_pred             ccHHHHHHHHcCCCCCeEEEe
Q 017143           86 THYQILMDIINHPKPHHVLVE  106 (376)
Q Consensus        86 ~h~~~~~~al~~~~g~~Vl~E  106 (376)
                      ...+.+.+|.+  +|++|+-|
T Consensus        92 ~~~p~l~~a~~--~gi~v~~~  110 (524)
T 3hn7_A           92 RGMDVIEYMLD--TGLRYTSG  110 (524)
T ss_dssp             TTSHHHHHHHH--HTCCEEEH
T ss_pred             CCCHHHHHHHH--CCCcEEEH
Confidence            44455678888  89999987

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=93.75  E-value=0.3  Score=41.68  Aligned_cols=95  Identities=12%  Similarity=0.023  Sum_probs=55.7

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC--C-CccCCHHHHh-hCCCCCEEEEe
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP--L-KVFPGHQELL-DSGLCDVVVVS   81 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~l-~~~~~D~V~i~   81 (376)
                      .-+|..+|+| .|...... ++.   ..++++ +|.+++..+.+++..+.+++.  + -...++.+.+ ....+|+|+..
T Consensus        92 ~~~vldiG~G-~G~~~~~l-~~~---~~~v~~-vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  165 (248)
T 2yvl_A           92 EKRVLEFGTG-SGALLAVL-SEV---AGEVWT-FEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVD  165 (248)
T ss_dssp             TCEEEEECCT-TSHHHHHH-HHH---SSEEEE-ECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEEC
T ss_pred             CCEEEEeCCC-ccHHHHHH-HHh---CCEEEE-EecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEEC
Confidence            3589999999 56644333 222   456664 699998877777766666652  1 1224554544 44468999886


Q ss_pred             CCCC-ccHHHHHHHHcCCCCCeEEEecC
Q 017143           82 TPNM-THYQILMDIINHPKPHHVLVEKP  108 (376)
Q Consensus        82 t~~~-~h~~~~~~al~~~~g~~Vl~EKP  108 (376)
                      .|.. .-.+.+.+.|+  .|-.+++.-|
T Consensus       166 ~~~~~~~l~~~~~~L~--~gG~l~~~~~  191 (248)
T 2yvl_A          166 VREPWHYLEKVHKSLM--EGAPVGFLLP  191 (248)
T ss_dssp             SSCGGGGHHHHHHHBC--TTCEEEEEES
T ss_pred             CcCHHHHHHHHHHHcC--CCCEEEEEeC
Confidence            6543 33444455555  3334444433

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=93.74  E-value=0.044  Score=46.36  Aligned_cols=102  Identities=17%  Similarity=0.162  Sum_probs=60.8

Q ss_pred             ceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh---cCCCCCccCCHHHHhhCCCCCEEEEe
Q 017143            6 TVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA---FDWPLKVFPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         6 ~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~D~V~i~   81 (376)
                      +++|.|.| +|++|...+..|.+.   +.+|++ .++++++.   ..+...   ...++.-.++++++++.  +|+|+.+
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~---g~~V~~-~~r~~~~~---~~~~~~~~~~~~Dl~d~~~~~~~~~~--~d~vi~~   74 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNR---GFEVTA-VVRHPEKI---KIENEHLKVKKADVSSLDEVCEVCKG--ADAVISA   74 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTT---TCEEEE-ECSCGGGC---CCCCTTEEEECCCTTCHHHHHHHHTT--CSEEEEC
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHC---CCEEEE-EEcCcccc---hhccCceEEEEecCCCHHHHHHHhcC--CCEEEEe
Confidence            47899999 589999998888875   678775 56776632   111111   11111122345566764  8999988


Q ss_pred             CCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCe--EEEEe
Q 017143           82 TPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDI--LVQVG  134 (376)
Q Consensus        82 t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~--~~~v~  134 (376)
                      .....         .  . .     ..+..+......+++++++. ++  .++++
T Consensus        75 a~~~~---------~--~-~-----~~~~~n~~~~~~l~~~~~~~-~~~~~v~~S  111 (227)
T 3dhn_A           75 FNPGW---------N--N-P-----DIYDETIKVYLTIIDGVKKA-GVNRFLMVG  111 (227)
T ss_dssp             CCC-----------------------CCSHHHHHHHHHHHHHHHT-TCSEEEEEC
T ss_pred             CcCCC---------C--C-h-----hHHHHHHHHHHHHHHHHHHh-CCCEEEEeC
Confidence            75431         1  0 0     13445777888899998554 43  44444

>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus}

Probab=93.73  E-value=0.037  Score=50.17  Aligned_cols=88  Identities=20%  Similarity=0.273  Sum_probs=55.5

Q ss_pred             eeEEEEe-CChhhHHHHHHhh--hhcCCCcEEEEEeCCChhhHHHHHHHHHhc-CCCCCccC-CHHHHhhCCCCCEEEEe
Q 017143            7 VKYGIIG-MGMMGREHFINLH--HLRSQGVSVVCIADPHLQSRQQALKLANAF-DWPLKVFP-GHQELLDSGLCDVVVVS   81 (376)
Q Consensus         7 ~~v~iiG-~G~~g~~~~~~~~--~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~l~~~~~D~V~i~   81 (376)
                      +||+|+| +|.+|+..++.+.  .+  +.++++.+.++...    .+.+.  + +.++.+++ +.++ +   ++|+|+.|
T Consensus         1 mkVaI~GAtG~iG~~llr~L~~~~~--~~~~l~~~~s~~~~----g~~l~--~~g~~i~v~~~~~~~-~---~~DvV~~a   68 (331)
T 2yv3_A            1 MRVAVVGATGAVGREILKVLEARNF--PLSELRLYASPRSA----GVRLA--FRGEEIPVEPLPEGP-L---PVDLVLAS   68 (331)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTC--CCSCCEEEECGGGS----SCEEE--ETTEEEEEEECCSSC-C---CCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--CcEEEEEeeccccC----CCEEE--EcCceEEEEeCChhh-c---CCCEEEEC
Confidence            5899999 8999999988887  44  67777655543211    00000  0 10111211 2222 2   58999999


Q ss_pred             CCCCccHHHHHHHHcCCCCCeEEEecCC
Q 017143           82 TPNMTHYQILMDIINHPKPHHVLVEKPL  109 (376)
Q Consensus        82 t~~~~h~~~~~~al~~~~g~~Vl~EKP~  109 (376)
                      +|.....+.+..+++  +|. +.+.-+.
T Consensus        69 ~g~~~s~~~a~~~~~--~G~-~vId~s~   93 (331)
T 2yv3_A           69 AGGGISRAKALVWAE--GGA-LVVDNSS   93 (331)
T ss_dssp             SHHHHHHHHHHHHHH--TTC-EEEECSS
T ss_pred             CCccchHHHHHHHHH--CCC-EEEECCC
Confidence            999999999999999  676 4444443

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=93.70  E-value=0.43  Score=39.96  Aligned_cols=69  Identities=12%  Similarity=0.078  Sum_probs=42.6

Q ss_pred             eEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChh-hHHHHHHHHH-hcCC-----CCCccCCHHHHhhCCCCCEEE
Q 017143            8 KYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQ-SRQQALKLAN-AFDW-----PLKVFPGHQELLDSGLCDVVV   79 (376)
Q Consensus         8 ~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~-~~~~~~~~~~-~~~~-----~~~~~~~~~~~l~~~~~D~V~   79 (376)
                      +|.|.| +|.+|+..+..|.+.  .+.+|++ ++++++ +.   ++++. ..++     ++.-.++++++++.  +|+|+
T Consensus         7 ~vlVtGasg~iG~~~~~~l~~~--~g~~V~~-~~r~~~~~~---~~~~~~~~~~~~~~~D~~d~~~~~~~~~~--~d~vv   78 (221)
T 3r6d_A            7 YITILGAAGQIAQXLTATLLTY--TDMHITL-YGRQLKTRI---PPEIIDHERVTVIEGSFQNPGXLEQAVTN--AEVVF   78 (221)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHH--CCCEEEE-EESSHHHHS---CHHHHTSTTEEEEECCTTCHHHHHHHHTT--CSEEE
T ss_pred             EEEEEeCCcHHHHHHHHHHHhc--CCceEEE-EecCccccc---hhhccCCCceEEEECCCCCHHHHHHHHcC--CCEEE
Confidence            399999 599999999888833  5888876 467665 32   23321 1111     11112345566654  89999


Q ss_pred             EeCCC
Q 017143           80 VSTPN   84 (376)
Q Consensus        80 i~t~~   84 (376)
                      .+...
T Consensus        79 ~~ag~   83 (221)
T 3r6d_A           79 VGAME   83 (221)
T ss_dssp             ESCCC
T ss_pred             EcCCC
Confidence            88764

>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}

Probab=93.69  E-value=0.29  Score=43.12  Aligned_cols=82  Identities=13%  Similarity=0.157  Sum_probs=63.0

Q ss_pred             hhHHHHHHHHHhcCCCC--CccCCH-HHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHH
Q 017143           44 QSRQQALKLANAFDWPL--KVFPGH-QELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVV  120 (376)
Q Consensus        44 ~~~~~~~~~~~~~~~~~--~~~~~~-~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~  120 (376)
                      +-+...+++++++|+++  ..++.. -+++.+. +|++-|.+..-...++.+++-+  -||+|++-++++.+++|....+
T Consensus        99 ~GL~~L~~~~~e~GLpv~Tev~D~~~v~~l~~~-vd~lkIgA~~~~n~~LLr~va~--~gkPVilK~Gms~t~~ei~~av  175 (298)
T 3fs2_A           99 KALEVFSDLKKEYGFPVLTDIHTEEQCAAVAPV-VDVLQIPAFLCRQTDLLIAAAR--TGRVVNVKKGQFLAPWDMKNVL  175 (298)
T ss_dssp             HHHHHHHHHHHHHCCCEEEECCSHHHHHHHTTT-CSEEEECGGGTTCHHHHHHHHH--TTSEEEEECCTTCCGGGHHHHH
T ss_pred             HHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhh-CCEEEECccccCCHHHHHHHHc--cCCcEEEeCCCCCCHHHHHHHH
Confidence            44556677888999982  333322 2455555 9999999999888998888888  8999999999999999998888


Q ss_pred             HHHHhCCC
Q 017143          121 DAARKRPD  128 (376)
Q Consensus       121 ~~a~~~~~  128 (376)
                      +...+.++
T Consensus       176 e~i~~~Gn  183 (298)
T 3fs2_A          176 AKITESGN  183 (298)
T ss_dssp             HHHHTTTC
T ss_pred             HHHHHcCC
Confidence            88855433

>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}

Probab=93.69  E-value=0.92  Score=39.37  Aligned_cols=111  Identities=13%  Similarity=0.137  Sum_probs=76.5

Q ss_pred             EEEEeCChhh-----HHHHHHhhhhcCCCcEEEEEeCCC------------hhhHHHHHHHHHhcCCCC--CccC--CHH
Q 017143            9 YGIIGMGMMG-----REHFINLHHLRSQGVSVVCIADPH------------LQSRQQALKLANAFDWPL--KVFP--GHQ   67 (376)
Q Consensus         9 v~iiG~G~~g-----~~~~~~~~~~~~~~~~~~~v~d~~------------~~~~~~~~~~~~~~~~~~--~~~~--~~~   67 (376)
                      +.|.|....+     ...+..++..   +++++-.....            .+....+.++++++|+++  ..++  +.+
T Consensus        25 ~vIAgpc~~~~~e~a~~~a~~l~~~---Ga~~vk~~~fkprts~~~~~g~~~egl~~l~~~~~~~Gl~~~te~~d~~~~~  101 (262)
T 1zco_A           25 TIIAGPCSIESREQIMKVAEFLAEV---GIKVLRGGAFKPRTSPYSFQGYGEKALRWMREAADEYGLVTVTEVMDTRHVE  101 (262)
T ss_dssp             EEEEECSBCCCHHHHHHHHHHHHHT---TCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCEEEEECCCGGGHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHc---CCCEEEEEecccCCCcccccCccHHHHHHHHHHHHHcCCcEEEeeCCHHhHH
Confidence            3455654443     3455555554   55554443322            334456677888999982  3333  333


Q ss_pred             HHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhC
Q 017143           68 ELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKR  126 (376)
Q Consensus        68 ~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~  126 (376)
                       ++.+. +|++-|.+.+-.+.++.+++.+  .||+|++-++++.+++|+..-++.....
T Consensus       102 -~l~~~-vd~~kIga~~~~n~~ll~~~a~--~~kPV~lk~G~~~t~~e~~~Av~~i~~~  156 (262)
T 1zco_A          102 -LVAKY-SDILQIGARNSQNFELLKEVGK--VENPVLLKRGMGNTIQELLYSAEYIMAQ  156 (262)
T ss_dssp             -HHHHH-CSEEEECGGGTTCHHHHHHHTT--SSSCEEEECCTTCCHHHHHHHHHHHHTT
T ss_pred             -HHHhh-CCEEEECcccccCHHHHHHHHh--cCCcEEEecCCCCCHHHHHHHHHHHHHC
Confidence             44444 8999999999999999999999  8999999999999999988877666433

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=93.68  E-value=0.36  Score=42.76  Aligned_cols=72  Identities=18%  Similarity=0.214  Sum_probs=44.1

Q ss_pred             ceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCC-----hhhHHHHHHHHHhcCCCC--CccC---CHHHHhhCCC
Q 017143            6 TVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPH-----LQSRQQALKLANAFDWPL--KVFP---GHQELLDSGL   74 (376)
Q Consensus         6 ~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~-----~~~~~~~~~~~~~~~~~~--~~~~---~~~~~l~~~~   74 (376)
                      +++|.|+| +|.+|...+..|.+.   +.+|+++ +|+     +++.+..+.+. ..++.+  --++   +++++++.  
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~---g~~V~~~-~R~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~d~~~l~~~~~~--   76 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISL---GHPTYVL-FRPEVVSNIDKVQMLLYFK-QLGAKLIEASLDDHQRLVDALKQ--   76 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHT---TCCEEEE-CCSCCSSCHHHHHHHHHHH-TTTCEEECCCSSCHHHHHHHHTT--
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhC---CCcEEEE-ECCCcccchhHHHHHHHHH-hCCeEEEeCCCCCHHHHHHHHhC--
Confidence            46899999 599999999888875   6787764 565     33222222222 223320  1122   35566654  


Q ss_pred             CCEEEEeCCC
Q 017143           75 CDVVVVSTPN   84 (376)
Q Consensus        75 ~D~V~i~t~~   84 (376)
                      +|+|+.++..
T Consensus        77 ~d~vi~~a~~   86 (313)
T 1qyd_A           77 VDVVISALAG   86 (313)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCcc
Confidence            8999988764

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=93.66  E-value=0.38  Score=43.33  Aligned_cols=134  Identities=18%  Similarity=0.150  Sum_probs=76.5

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCc--c--CCHHH-H---hhCCCCCE
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKV--F--PGHQE-L---LDSGLCDV   77 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~-~---l~~~~~D~   77 (376)
                      -+|.|+|+ |.+|...+..++..   +.++++ +++++++++.++    ++|.. ..  +  .++.+ +   .....+|+
T Consensus       147 ~~vlV~Ga~ggiG~~~~~~a~~~---G~~Vi~-~~~~~~~~~~~~----~~g~~-~~~d~~~~~~~~~i~~~~~~~~~d~  217 (333)
T 1wly_A          147 DYVLIHAAAGGMGHIMVPWARHL---GATVIG-TVSTEEKAETAR----KLGCH-HTINYSTQDFAEVVREITGGKGVDV  217 (333)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHT---TCEEEE-EESSHHHHHHHH----HHTCS-EEEETTTSCHHHHHHHHHTTCCEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHHC---CCEEEE-EeCCHHHHHHHH----HcCCC-EEEECCCHHHHHHHHHHhCCCCCeE
Confidence            47899995 99999888777765   678775 567776444333    34543 11  1  23322 2   22235899


Q ss_pred             EEEeCCCCccHHHHHHHHcCCCCCeEEEec----CCCCCHHHHHHHHHHHHhCCC-eEEEEeecccc--CH-----HHHH
Q 017143           78 VVVSTPNMTHYQILMDIINHPKPHHVLVEK----PLCTTVADCKKVVDAARKRPD-ILVQVGLEYRY--MP-----PVAK  145 (376)
Q Consensus        78 V~i~t~~~~h~~~~~~al~~~~g~~Vl~EK----P~a~~~~e~~~l~~~a~~~~~-~~~~v~~~~r~--~p-----~~~~  145 (376)
                      |+-++.. ...+.+.++++. .|+-|++--    |...+...     ... .+ + +....+....|  .|     .+..
T Consensus       218 vi~~~g~-~~~~~~~~~l~~-~G~iv~~g~~~~~~~~~~~~~-----~~~-~~-~~~~~i~g~~~~~~~~~~~~~~~~~~  288 (333)
T 1wly_A          218 VYDSIGK-DTLQKSLDCLRP-RGMCAAYGHASGVADPIRVVE-----DLG-VR-GSLFITRPALWHYMSNRSEIDEGSKC  288 (333)
T ss_dssp             EEECSCT-TTHHHHHHTEEE-EEEEEECCCTTCCCCCCCHHH-----HTT-TT-TSCEEECCCGGGGSCSHHHHHHHHHH
T ss_pred             EEECCcH-HHHHHHHHhhcc-CCEEEEEecCCCCcCCCChhH-----hhh-hc-CCcEEEEEeehhhccCHHHHHHHHHH
Confidence            9999887 667778888874 255555532    22233220     222 22 3 12233332222  33     4677


Q ss_pred             HHHHHHcCCCCce
Q 017143          146 LIQIVKSGSIGQV  158 (376)
Q Consensus       146 ~k~~i~~g~iG~i  158 (376)
                      +.+++++|.|-.+
T Consensus       289 ~~~l~~~g~l~~~  301 (333)
T 1wly_A          289 LFDAVKAGVLHSS  301 (333)
T ss_dssp             HHHHHHTTSCCCC
T ss_pred             HHHHHHCCCcCCC
Confidence            8888898887543

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=93.60  E-value=0.23  Score=44.33  Aligned_cols=83  Identities=18%  Similarity=0.189  Sum_probs=50.0

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChh-hHHHHHHHHHhcCCCC--CccC---CHHHHhhCCCCCEEE
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQ-SRQQALKLANAFDWPL--KVFP---GHQELLDSGLCDVVV   79 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~-~~~~~~~~~~~~~~~~--~~~~---~~~~~l~~~~~D~V~   79 (376)
                      .+|.|+|+ |.+|...+..|.+.   +.+|+++ +|++. +.+..+++. ..++.+  --++   +++++++.  +|+|+
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~---g~~V~~l-~R~~~~~~~~~~~l~-~~~v~~v~~Dl~d~~~l~~a~~~--~d~vi   84 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKL---GHPTYVF-TRPNSSKTTLLDEFQ-SLGAIIVKGELDEHEKLVELMKK--VDVVI   84 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHT---TCCEEEE-ECTTCSCHHHHHHHH-HTTCEEEECCTTCHHHHHHHHTT--CSEEE
T ss_pred             CeEEEECCCchHHHHHHHHHHHC---CCcEEEE-ECCCCchhhHHHHhh-cCCCEEEEecCCCHHHHHHHHcC--CCEEE
Confidence            48999995 99999999888875   6787765 45553 222222332 224321  1122   35566654  89999


Q ss_pred             EeCCC---CccHHHHHHHHc
Q 017143           80 VSTPN---MTHYQILMDIIN   96 (376)
Q Consensus        80 i~t~~---~~h~~~~~~al~   96 (376)
                      .++..   .....++..|.+
T Consensus        85 ~~a~~~~~~~~~~l~~aa~~  104 (318)
T 2r6j_A           85 SALAFPQILDQFKILEAIKV  104 (318)
T ss_dssp             ECCCGGGSTTHHHHHHHHHH
T ss_pred             ECCchhhhHHHHHHHHHHHh
Confidence            88864   234455555555

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=93.57  E-value=0.18  Score=45.62  Aligned_cols=88  Identities=11%  Similarity=0.063  Sum_probs=51.7

Q ss_pred             CCceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCCh----hhHHHHHHHHHhcCCC-----CCccCCHHHHhhCC
Q 017143            4 NDTVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHL----QSRQQALKLANAFDWP-----LKVFPGHQELLDSG   73 (376)
Q Consensus         4 ~~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~----~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~   73 (376)
                      |++.+|.|+|+ |++|...+..|.+.   +.+|+++. |++    ++....+++.. .++.     +.-.++++++++..
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~---g~~V~~l~-R~~~~~~~~~~~~~~l~~-~~v~~~~~Dl~d~~~l~~~~~~~   82 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDA---HRPTYILA-RPGPRSPSKAKIFKALED-KGAIIVYGLINEQEAMEKILKEH   82 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHT---TCCEEEEE-CSSCCCHHHHHHHHHHHH-TTCEEEECCTTCHHHHHHHHHHT
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHC---CCCEEEEE-CCCCCChhHHHHHHHHHh-CCcEEEEeecCCHHHHHHHHhhC
Confidence            34579999997 99999999888875   57877654 544    32222223321 2332     11223456777743


Q ss_pred             CCCEEEEeCCC---CccHHHHHHHHc
Q 017143           74 LCDVVVVSTPN---MTHYQILMDIIN   96 (376)
Q Consensus        74 ~~D~V~i~t~~---~~h~~~~~~al~   96 (376)
                      .+|+|+.+...   ..+..++..|.+
T Consensus        83 ~~d~Vi~~a~~~n~~~~~~l~~aa~~  108 (346)
T 3i6i_A           83 EIDIVVSTVGGESILDQIALVKAMKA  108 (346)
T ss_dssp             TCCEEEECCCGGGGGGHHHHHHHHHH
T ss_pred             CCCEEEECCchhhHHHHHHHHHHHHH
Confidence            59999988874   233445555555

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=93.55  E-value=0.64  Score=42.60  Aligned_cols=88  Identities=15%  Similarity=0.091  Sum_probs=59.1

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc----CCHHHHhh---CCCCCEE
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF----PGHQELLD---SGLCDVV   78 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~---~~~~D~V   78 (376)
                      -+|.|+|+ |.+|...+...+..   +.++++++  ++++++    +++++|.+ .++    .++.+.+.   ...+|+|
T Consensus       166 ~~VlV~Ga~G~vG~~a~qla~~~---Ga~Vi~~~--~~~~~~----~~~~lGa~-~vi~~~~~~~~~~v~~~t~g~~d~v  235 (371)
T 3gqv_A          166 VYVLVYGGSTATATVTMQMLRLS---GYIPIATC--SPHNFD----LAKSRGAE-EVFDYRAPNLAQTIRTYTKNNLRYA  235 (371)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHT---TCEEEEEE--CGGGHH----HHHHTTCS-EEEETTSTTHHHHHHHHTTTCCCEE
T ss_pred             cEEEEECCCcHHHHHHHHHHHHC---CCEEEEEe--CHHHHH----HHHHcCCc-EEEECCCchHHHHHHHHccCCccEE
Confidence            57999999 88998877766654   77998886  455433    55667765 222    23433332   1349999


Q ss_pred             EEeCCCCccHHHHHHHH-cCCCCCeEEE
Q 017143           79 VVSTPNMTHYQILMDII-NHPKPHHVLV  105 (376)
Q Consensus        79 ~i~t~~~~h~~~~~~al-~~~~g~~Vl~  105 (376)
                      +-++......+.+.++| +. .|+-|++
T Consensus       236 ~d~~g~~~~~~~~~~~l~~~-~G~iv~~  262 (371)
T 3gqv_A          236 LDCITNVESTTFCFAAIGRA-GGHYVSL  262 (371)
T ss_dssp             EESSCSHHHHHHHHHHSCTT-CEEEEES
T ss_pred             EECCCchHHHHHHHHHhhcC-CCEEEEE
Confidence            99999877788888888 43 3655554

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=93.53  E-value=0.072  Score=48.84  Aligned_cols=75  Identities=15%  Similarity=0.116  Sum_probs=45.3

Q ss_pred             CCCCCceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-----CC-ccCCHHHHhhCC
Q 017143            1 MAANDTVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-----LK-VFPGHQELLDSG   73 (376)
Q Consensus         1 m~~~~~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~l~~~   73 (376)
                      |..|++++|.|.| +|++|...+..|.+.  ++.+|+++ ++++++   ...+...-++.     +. -.++++++++. 
T Consensus        19 ~~~m~~~~vlVtGatG~iG~~l~~~L~~~--~g~~V~~~-~r~~~~---~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~-   91 (372)
T 3slg_A           19 PGSMKAKKVLILGVNGFIGHHLSKRILET--TDWEVFGM-DMQTDR---LGDLVKHERMHFFEGDITINKEWVEYHVKK-   91 (372)
T ss_dssp             ----CCCEEEEESCSSHHHHHHHHHHHHH--SSCEEEEE-ESCCTT---TGGGGGSTTEEEEECCTTTCHHHHHHHHHH-
T ss_pred             CcccCCCEEEEECCCChHHHHHHHHHHhC--CCCEEEEE-eCChhh---hhhhccCCCeEEEeCccCCCHHHHHHHhcc-
Confidence            4455678999999 699999999988886  68898876 465542   22222212222     11 11234556664 


Q ss_pred             CCCEEEEeCC
Q 017143           74 LCDVVVVSTP   83 (376)
Q Consensus        74 ~~D~V~i~t~   83 (376)
                       +|+|+-+..
T Consensus        92 -~d~Vih~A~  100 (372)
T 3slg_A           92 -CDVILPLVA  100 (372)
T ss_dssp             -CSEEEECBC
T ss_pred             -CCEEEEcCc
Confidence             899987554

>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}

Probab=93.53  E-value=0.28  Score=43.91  Aligned_cols=77  Identities=9%  Similarity=0.128  Sum_probs=53.8

Q ss_pred             CceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCC----ChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEE
Q 017143            5 DTVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADP----HLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVV   79 (376)
Q Consensus         5 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~   79 (376)
                      +.+||++||= +++++..+..+..+   +++++.++-.    .++-.+.+++.+++.|..+..++|.++++++  .|+|+
T Consensus       156 ~glkva~vGD~~rva~Sl~~~~~~~---G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~eav~~--aDvvy  230 (323)
T 3gd5_A          156 AGLKLAYVGDGNNVAHSLLLGCAKV---GMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARG--AHILY  230 (323)
T ss_dssp             TTCEEEEESCCCHHHHHHHHHHHHH---TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTT--CSEEE
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHc---CCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEECCHHHHhcC--CCEEE
Confidence            3589999995 55677777777776   7887765522    2233345666666777666688999999987  89988


Q ss_pred             EeCCCCc
Q 017143           80 VSTPNMT   86 (376)
Q Consensus        80 i~t~~~~   86 (376)
                      .-+.-..
T Consensus       231 t~~wqs~  237 (323)
T 3gd5_A          231 TDVWTSM  237 (323)
T ss_dssp             ECCCC--
T ss_pred             EeceecC
Confidence            8765443

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=93.48  E-value=0.079  Score=48.90  Aligned_cols=132  Identities=14%  Similarity=0.106  Sum_probs=78.9

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCc-EEEEEeCCChhhHHHHHHHHHhcCCCCCcc------CCHHHHhhC---CCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGV-SVVCIADPHLQSRQQALKLANAFDWPLKVF------PGHQELLDS---GLCD   76 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~-~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~---~~~D   76 (376)
                      -+|.|+|+|.+|...+..++..   +. ++++ +++++++++    +++++|.+ .++      .++.+.+.+   ..+|
T Consensus       195 ~~VlV~GaG~vG~~a~q~a~~~---Ga~~Vi~-~~~~~~~~~----~a~~lGa~-~vi~~~~~~~~~~~~i~~~~~gg~D  265 (378)
T 3uko_A          195 SNVAIFGLGTVGLAVAEGAKTA---GASRIIG-IDIDSKKYE----TAKKFGVN-EFVNPKDHDKPIQEVIVDLTDGGVD  265 (378)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHH---TCSCEEE-ECSCTTHHH----HHHTTTCC-EEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred             CEEEEECCCHHHHHHHHHHHHc---CCCeEEE-EcCCHHHHH----HHHHcCCc-EEEccccCchhHHHHHHHhcCCCCC
Confidence            4799999999999877776665   66 5665 577777443    45567765 221      234333321   2699


Q ss_pred             EEEEeCCCCccHHHHHHHHcCCCCCeEEEecCC-----CCCHHHHHHHHHHHHhCCCeEEEEeecccc--CHHHHHHHHH
Q 017143           77 VVVVSTPNMTHYQILMDIINHPKPHHVLVEKPL-----CTTVADCKKVVDAARKRPDILVQVGLEYRY--MPPVAKLIQI  149 (376)
Q Consensus        77 ~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~-----a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~--~p~~~~~k~~  149 (376)
                      +|+-++........+.++++.+.|+-|++--+.     ..+..      ... .  ++.+.-.+...+  ...+..+.++
T Consensus       266 ~vid~~g~~~~~~~~~~~l~~g~G~iv~~G~~~~~~~~~~~~~------~~~-~--~~~i~g~~~~~~~~~~~~~~~~~l  336 (378)
T 3uko_A          266 YSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPF------QLV-T--GRVWKGTAFGGFKSRTQVPWLVEK  336 (378)
T ss_dssp             EEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTH------HHH-T--TCEEEECSGGGCCHHHHHHHHHHH
T ss_pred             EEEECCCCHHHHHHHHHHhhccCCEEEEEcccCCCCccccCHH------HHh-c--CcEEEEEEecCCCchHHHHHHHHH
Confidence            999999987778888888883115556554321     11211      122 1  333332222322  2356777788


Q ss_pred             HHcCCCC
Q 017143          150 VKSGSIG  156 (376)
Q Consensus       150 i~~g~iG  156 (376)
                      +.+|++-
T Consensus       337 ~~~g~l~  343 (378)
T 3uko_A          337 YMNKEIK  343 (378)
T ss_dssp             HHTTSSC
T ss_pred             HHcCCCC
Confidence            8887764

>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6

Probab=93.48  E-value=0.56  Score=42.95  Aligned_cols=83  Identities=11%  Similarity=0.076  Sum_probs=66.3

Q ss_pred             ChhhHHHHHHHHHhcCCC--CCccCCH-HHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHH
Q 017143           42 HLQSRQQALKLANAFDWP--LKVFPGH-QELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKK  118 (376)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~  118 (376)
                      ..+-.....+.+++.|++  ...|+.- -++|++-++|+.=|++.+-.++++++++.+  .||+|++-.-|+ |++|...
T Consensus        99 ~~e~~~~L~~~~~~~Gi~~~stpfD~~svd~l~~~~vd~~KIgS~~~~N~pLL~~va~--~gKPViLStGma-Tl~Ei~~  175 (385)
T 1vli_A           99 PAEWILPLLDYCREKQVIFLSTVCDEGSADLLQSTSPSAFKIASYEINHLPLLKYVAR--LNRPMIFSTAGA-EISDVHE  175 (385)
T ss_dssp             CGGGHHHHHHHHHHTTCEEECBCCSHHHHHHHHTTCCSCEEECGGGTTCHHHHHHHHT--TCSCEEEECTTC-CHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCcEEEccCCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHh--cCCeEEEECCCC-CHHHHHH
Confidence            334446677888899988  2334422 256666678999999999999999999999  899999999998 9999999


Q ss_pred             HHHHHHhCC
Q 017143          119 VVDAARKRP  127 (376)
Q Consensus       119 l~~~a~~~~  127 (376)
                      -++...+.+
T Consensus       176 Ave~i~~~G  184 (385)
T 1vli_A          176 AWRTIRAEG  184 (385)
T ss_dssp             HHHHHHTTT
T ss_pred             HHHHHHHCC
Confidence            999995543

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=93.40  E-value=0.1  Score=47.45  Aligned_cols=131  Identities=15%  Similarity=0.097  Sum_probs=77.8

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCc-EEEEEeCCChhhHHHHHHHHHhcCCCCCc--c--CCHHHHhh---CCCCCEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGV-SVVCIADPHLQSRQQALKLANAFDWPLKV--F--PGHQELLD---SGLCDVV   78 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~-~~~~v~d~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~l~---~~~~D~V   78 (376)
                      -+|.|+|+|.+|...+..++..   +. ++++ .++++++++.+    +++ .. .+  +  .++.+.+.   ...+|+|
T Consensus       166 ~~VlV~GaG~vG~~~~q~a~~~---Ga~~Vi~-~~~~~~~~~~~----~~l-a~-~v~~~~~~~~~~~~~~~~~~g~D~v  235 (343)
T 2dq4_A          166 KSVLITGAGPIGLMAAMVVRAS---GAGPILV-SDPNPYRLAFA----RPY-AD-RLVNPLEEDLLEVVRRVTGSGVEVL  235 (343)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHT---TCCSEEE-ECSCHHHHGGG----TTT-CS-EEECTTTSCHHHHHHHHHSSCEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHc---CCCEEEE-ECCCHHHHHHH----HHh-HH-hccCcCccCHHHHHHHhcCCCCCEE
Confidence            3799999999999877766654   67 7775 56777644333    333 22 11  1  24444443   2358999


Q ss_pred             EEeCCCCccHHHHHHHHcCCCCCeEEEecC---CCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCC
Q 017143           79 VVSTPNMTHYQILMDIINHPKPHHVLVEKP---LCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSI  155 (376)
Q Consensus        79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP---~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~i  155 (376)
                      +.++......+.+.++++. .|+-|++--+   ...+..     .... .+ ++.+.-.+..+....+..+.+++++|++
T Consensus       236 id~~g~~~~~~~~~~~l~~-~G~iv~~g~~~~~~~~~~~-----~~~~-~~-~~~i~g~~~~~~~~~~~~~~~l~~~g~~  307 (343)
T 2dq4_A          236 LEFSGNEAAIHQGLMALIP-GGEARILGIPSDPIRFDLA-----GELV-MR-GITAFGIAGRRLWQTWMQGTALVYSGRV  307 (343)
T ss_dssp             EECSCCHHHHHHHHHHEEE-EEEEEECCCCSSCEEECHH-----HHTG-GG-TCEEEECCSCCTTHHHHHHHHHHHHTSS
T ss_pred             EECCCCHHHHHHHHHHHhc-CCEEEEEecCCCCceeCcH-----HHHH-hC-ceEEEEeecCCCHHHHHHHHHHHHcCCC
Confidence            9999876667778888874 2555555322   222220     1222 22 4444333222255678888899998874

>2bh9_A G6PD, glucose-6-phosphate 1-dehydrogenase; oxidoreductase, oxidoreductase (CHOH(D)-NADP), carbohydrate metabolism, glucose metabolism; HET: NAP; 2.5A {Homo sapiens} PDB: 2bhl_A* 1qki_A*

Probab=93.38  E-value=0.79  Score=43.18  Aligned_cols=339  Identities=13%  Similarity=0.067  Sum_probs=164.7

Q ss_pred             CceeEEEEeC-ChhhH-HHHHHhhhh-----cCCCcEEEEEeCCChhhHH-----------------HHHHHHHhc----
Q 017143            5 DTVKYGIIGM-GMMGR-EHFINLHHL-----RSQGVSVVCIADPHLQSRQ-----------------QALKLANAF----   56 (376)
Q Consensus         5 ~~~~v~iiG~-G~~g~-~~~~~~~~~-----~~~~~~~~~v~d~~~~~~~-----------------~~~~~~~~~----   56 (376)
                      .+.-+.|.|+ |-.++ ..+|+|-++     .++++.|+|+.-++-+..+                 ..++|++..    
T Consensus         4 ~~~~~VIFGatGDLA~RKL~PaLy~L~~~g~Lp~~~~iiG~aR~~~~~~~~r~~~~~~l~~~~~~~~~~~~F~~~~~Y~~   83 (489)
T 2bh9_A            4 DTHIFIIMGASGDLAKKKIYPTIWWLFRDGLLPENTFIVGYARSRLTVADIRKQSEPFFKATPEEKLKLEDFFARNSYVA   83 (489)
T ss_dssp             CCEEEEEETTTSHHHHHTHHHHHHHHHHTTCSCSSEEEEEEESSCCCHHHHHHHHGGGSCCCGGGHHHHHHHHHTEEEEE
T ss_pred             CCeEEEEeCCcHHHHHHhHHHHHHHHHHcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHhcccCCHHHHHHHHhcCEEEe
Confidence            3467889995 76765 577877664     1367999998744322111                 112222221    


Q ss_pred             -CCC-CCccCCHHHHhhCC-----CCCEEEEeCCCCccHHHHHHHHcCC---C-CCeEEEecCCCCCHHHHHHHHHHHHh
Q 017143           57 -DWP-LKVFPGHQELLDSG-----LCDVVVVSTPNMTHYQILMDIINHP---K-PHHVLVEKPLCTTVADCKKVVDAARK  125 (376)
Q Consensus        57 -~~~-~~~~~~~~~~l~~~-----~~D~V~i~t~~~~h~~~~~~al~~~---~-g~~Vl~EKP~a~~~~e~~~l~~~a~~  125 (376)
                       ++. ...|..+.+.++..     .--+.++++||..-..++...-++|   . ..-|.+|||+..+++.|++|-+... 
T Consensus        84 ~d~~~~~~~~~L~~~l~~~~~~~~~nr~fYLA~pP~~f~~i~~~L~~~gl~~~g~~RvViEKPFG~DL~SA~~Ln~~l~-  162 (489)
T 2bh9_A           84 GQYDDAASYQRLNSHMNALHLGSQANRLFYLALPPTVYEAVTKNIHESCMSQIGWNRIIVEKPFGRDLQSSDRLSNHIS-  162 (489)
T ss_dssp             CCSSCHHHHHHHHHHHHTTTTTTTSEEEEEECSCTTSHHHHHHHHHHHSCCSSSCEEEEECSCSCSSHHHHHHHHHHHT-
T ss_pred             cCCCCHHHHHHHHHHHHHhhccCCCceEEEEeCCHHHHHHHHHHHHHhCCCcCCceEEEEeCCCCCchhhHHHHHHHHH-
Confidence             000 01122222333321     1248889999997666655443311   1 2479999999999999999999883 


Q ss_pred             CCCeEEEEeeccccC-----HHHHHHHHHHHcCC-CC------ceEEEEEeeccCCcccccCccccccccCCcccccccc
Q 017143          126 RPDILVQVGLEYRYM-----PPVAKLIQIVKSGS-IG------QVKMVAIREHRFPFLVKVNDWNRFNENTGGTLVEKCC  193 (376)
Q Consensus       126 ~~~~~~~v~~~~r~~-----p~~~~~k~~i~~g~-iG------~i~~~~~~~~~~~~~~~~~~w~~~~~~~gG~l~d~g~  193 (376)
                      +   .+-....+|=+     ..++-+.-+-=++. +.      -|-.|++...=.-....+..  .  =...|++-|+.-
T Consensus       163 ~---~F~E~qIyRIDHYLGKE~VQNll~lRFaN~ifeplWNr~~Id~VqIt~aE~~GvegRgg--Y--YD~~GalRDmvQ  235 (489)
T 2bh9_A          163 S---LFREDQIYRIDHYLGKEMVQNLMVLRFANRIFGPIWNRDNIACVILTFKEPFGTEGRGG--Y--FDEFGIIRDVMQ  235 (489)
T ss_dssp             T---TSCGGGEEECCGGGGCHHHHHHHHHHHSCGGGSTTCSTTTEEEEEEEEECSCCCTTCHH--H--HTTTHHHHHTTT
T ss_pred             h---hCCHHHeeecccccchHHHHHHHHHHHhhHHHHhhhcccccceEEEEEecCCCccchhh--h--hhccchHHHHHH
Confidence            2   12222233322     23333322221211 11      23334332111000000000  0  123578888754


Q ss_pred             -cHHHHHHHHhCCCCeE-------------------------EEEecccccc-------cCc-cccCCCCCcccccEEEE
Q 017143          194 -HFFDLMRLFVGSNPMR-------------------------VMASGAVDVN-------HKD-EMYNGKVPDIIDNAYVI  239 (376)
Q Consensus       194 -H~ld~~~~l~G~~~~~-------------------------V~a~~~~~~~-------~~~-~~~~~~~~~~~d~~~~~  239 (376)
                       |.+.++..+.=++|.+                         |.++=.....       .+- +..-+..+.++.++.+.
T Consensus       236 NHLlQlL~lvAMEpP~s~~a~~iRdEKvKVLralrp~~~~~~VrGQY~~g~~~~g~~v~gY~~E~~V~~~S~TeTfaA~k  315 (489)
T 2bh9_A          236 NHLLQMLCLVAMEKPASTNSDDVRDEKVKVLKCISEVQANNVVLGQYVGNPDGEGEATKGYLDDPTVPRGSTTATFAAVV  315 (489)
T ss_dssp             THHHHHHHHHHCCCCSSSSHHHHHHHHHHHHTTBCCCCGGGEEEEEEECCTTSCSTTSSCGGGCTTSCTTCCCCSEEEEE
T ss_pred             HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhccCCCCccCeEEecccCCcCCCCCCCCCcccCCCCCCCCCCcceEEEE
Confidence             8888888775445543                         3333211100       000 00112345678888888


Q ss_pred             EEecC----CcEEEEEEEEeecCCCCceEEEEEecCCe------------eeee--ccc-ceeeeecccCCcc-ceEEe-
Q 017143          240 VEFEN----GSRGMLDLCMFAEGSKNEQEIVVVGNTGK------------GEAF--VPE-SIVRFATREAGRE-DVQTL-  298 (376)
Q Consensus       240 l~~~~----G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~------------i~~~--~~~-~~~~~~~~~~~~~-~~~~~-  298 (376)
                      +..+|    |+-..+.++......  ..++.|+..+--            +.+.  .++ -.+.+..+.++.. ..... 
T Consensus       316 l~IdN~RW~GVPFylRtGKrL~~r--~teI~I~Fk~~p~~~f~~~~~~N~LviriqP~e~i~l~~~~K~PG~~~~~~~~~  393 (489)
T 2bh9_A          316 LYVENERWDGVPFILRCGKALNER--KAEVRLQFHDVAGDIFHQQCKRNELVIRVQPNEAVYTKMMTKKPGMFFNPEESE  393 (489)
T ss_dssp             EEBCSTTTTTCEEEEEEESSCSSC--EEEEEEEECCCSSCCSTTCCCCCEEEEEEESSCEEEEEEEEECTTTCCSEEEEE
T ss_pred             EEEcCcCcCCCCEEEEcCCCCCcc--eEEEEEEecCCChhhcccCCCCCEEEEEeCCCCeEEEEEeccCCCCCCcceeee
Confidence            88877    677777655433221  124444444311            1111  111 0112222222211 01111 


Q ss_pred             -eccCccccccCCCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 017143          299 -KAEDDRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKG  358 (376)
Q Consensus       299 -~~~~~~~~~~~~~~~~~~~~l~~f~~~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~g  358 (376)
                       ..............+.|   -+-++++++  ++...=...++...+=++++-+.+..+.+
T Consensus       394 ld~~~~~~~~~~~~p~aY---ErLllD~~~--Gd~tlF~r~DEve~aW~ivdpil~~w~~~  449 (489)
T 2bh9_A          394 LDLTYGNRYKNVKLPDAY---ERLILDVFC--GSQMHFVRSDELREAWRIFTPLLHQIELE  449 (489)
T ss_dssp             EEEETTTSSSSSCCCCHH---HHHHHHHHH--TCCTTSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEechhcccCCCCCchH---HHHHHHHHc--CChhcCCChHHHHHHHHHHhHHHHHHhhC
Confidence             11000000000011122   245778887  77777688899999999999999987753

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=93.37  E-value=0.27  Score=44.42  Aligned_cols=143  Identities=12%  Similarity=0.037  Sum_probs=79.5

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc----CCHHHHhhC---CCCCEE
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF----PGHQELLDS---GLCDVV   78 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~---~~~D~V   78 (376)
                      -+|.|+|+ |.+|...+..++..   +.+++++ ++++++   .+.+++++|.. ..+    .++.+.+.+   ..+|+|
T Consensus       151 ~~vlI~Ga~g~iG~~~~~~a~~~---Ga~Vi~~-~~~~~~---~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~d~v  222 (336)
T 4b7c_A          151 ETVVISGAAGAVGSVAGQIARLK---GCRVVGI-AGGAEK---CRFLVEELGFD-GAIDYKNEDLAAGLKRECPKGIDVF  222 (336)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHT---TCEEEEE-ESSHHH---HHHHHHTTCCS-EEEETTTSCHHHHHHHHCTTCEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC---CCEEEEE-eCCHHH---HHHHHHHcCCC-EEEECCCHHHHHHHHHhcCCCceEE
Confidence            47999998 99998877766664   7787765 566663   43443567765 221    234333321   358999


Q ss_pred             EEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHH----HHHHHHHHHhCCCeEEEEeecccc----CHHHHHHHHHH
Q 017143           79 VVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVAD----CKKVVDAARKRPDILVQVGLEYRY----MPPVAKLIQIV  150 (376)
Q Consensus        79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e----~~~l~~~a~~~~~~~~~v~~~~r~----~p~~~~~k~~i  150 (376)
                      +-++.. .....+..+++.+ |+-|++=.+...+..+    -..+.... .+ ++.+.-.....+    ...+..+.+++
T Consensus       223 i~~~g~-~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~-~~-~~~i~g~~~~~~~~~~~~~~~~~~~l~  298 (336)
T 4b7c_A          223 FDNVGG-EILDTVLTRIAFK-ARIVLCGAISQYNNKEAVRGPANYLSLL-VN-RARMEGMVVMDYAQRFPEGLKEMATWL  298 (336)
T ss_dssp             EESSCH-HHHHHHHTTEEEE-EEEEECCCGGGGC------CCTTTTHHH-HT-TCEEEECCGGGGGGGHHHHHHHHHHHH
T ss_pred             EECCCc-chHHHHHHHHhhC-CEEEEEeecccccCCcccccchhHHHHH-hC-CcEEEEEEhhhhhhhhHHHHHHHHHHH
Confidence            988874 4556666677642 5555553221100000    00112233 23 444443333333    25667788888


Q ss_pred             HcCCCCceEEE
Q 017143          151 KSGSIGQVKMV  161 (376)
Q Consensus       151 ~~g~iG~i~~~  161 (376)
                      ++|.|-.....
T Consensus       299 ~~g~l~~~~~~  309 (336)
T 4b7c_A          299 AEGKLQSREDI  309 (336)
T ss_dssp             HTTSSCCCEEE
T ss_pred             HCCCcccceee
Confidence            88887655444

>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*

Probab=93.29  E-value=0.35  Score=42.37  Aligned_cols=79  Identities=18%  Similarity=0.184  Sum_probs=61.6

Q ss_pred             hhHHHHHHHHHhcCCCC--CccC--CHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHH
Q 017143           44 QSRQQALKLANAFDWPL--KVFP--GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKV  119 (376)
Q Consensus        44 ~~~~~~~~~~~~~~~~~--~~~~--~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l  119 (376)
                      +-+...+++++++|+++  ..++  +. +++.+. +|++-|.+-.-...++.+++-+  .||+|++-++++.+++|....
T Consensus        78 ~GL~~L~~~~~e~Glp~~Tev~d~~~v-~~l~~~-vd~lqIgA~~~~n~~LLr~va~--~gkPVilK~G~~~t~~ei~~a  153 (285)
T 3sz8_A           78 EGLKIFAEVKARFGVPVITDVHEAEQA-APVAEI-ADVLQVPAFLARQTDLVVAIAK--AGKPVNVKKPQFMSPTQLKHV  153 (285)
T ss_dssp             HHHHHHHHHHHHHCCCEEEECCSGGGH-HHHHTT-CSEEEECGGGTTCHHHHHHHHH--TSSCEEEECCTTSCGGGTHHH
T ss_pred             HHHHHHHHHHHhcCCeEEEEeCCHHHH-HHHHHh-CCEEEECccccCCHHHHHHHHc--cCCcEEEeCCCCCCHHHHHHH
Confidence            44566778888999982  3333  33 445555 9999999999899999998888  899999999999999998877


Q ss_pred             HHHHHhC
Q 017143          120 VDAARKR  126 (376)
Q Consensus       120 ~~~a~~~  126 (376)
                      ++...+.
T Consensus       154 ve~i~~~  160 (285)
T 3sz8_A          154 VSKCGEV  160 (285)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            7776444

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=93.26  E-value=0.25  Score=43.24  Aligned_cols=97  Identities=10%  Similarity=0.032  Sum_probs=60.0

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC--C-CccCCHHHHhhCCCCCEEEEeCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP--L-KVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      .+|.-+|+|. |...+..+... .+..++++ +|.+++..+.+++..+.+++.  + -...|+.+.+....+|+|++..|
T Consensus       114 ~~VLDiG~G~-G~~~~~la~~~-~~~~~v~~-vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~V~~~~~  190 (277)
T 1o54_A          114 DRIIDTGVGS-GAMCAVLARAV-GSSGKVFA-YEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLDVP  190 (277)
T ss_dssp             CEEEEECCTT-SHHHHHHHHHT-TTTCEEEE-ECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEECCS
T ss_pred             CEEEEECCcC-CHHHHHHHHHh-CCCcEEEE-EECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCCccCEEEECCc
Confidence            5899999996 55444333332 15678775 699998877777766666652  1 12346666555556899998665


Q ss_pred             CC-ccHHHHHHHHcCCCCCeEEEecC
Q 017143           84 NM-THYQILMDIINHPKPHHVLVEKP  108 (376)
Q Consensus        84 ~~-~h~~~~~~al~~~~g~~Vl~EKP  108 (376)
                      .. .-.+.+.++|+  .|-.++++-|
T Consensus       191 ~~~~~l~~~~~~L~--pgG~l~~~~~  214 (277)
T 1o54_A          191 DPWNYIDKCWEALK--GGGRFATVCP  214 (277)
T ss_dssp             CGGGTHHHHHHHEE--EEEEEEEEES
T ss_pred             CHHHHHHHHHHHcC--CCCEEEEEeC
Confidence            43 44555566666  4444555444

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=93.22  E-value=0.74  Score=41.90  Aligned_cols=132  Identities=9%  Similarity=0.011  Sum_probs=77.8

Q ss_pred             eeEEEEeCChhhHHH-HHHh-hhhcCCCcE-EEEEeCCChh---hHHHHHHHHHhcCCC-CCccC--CHHHHhh-CCCCC
Q 017143            7 VKYGIIGMGMMGREH-FINL-HHLRSQGVS-VVCIADPHLQ---SRQQALKLANAFDWP-LKVFP--GHQELLD-SGLCD   76 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~-~~~~-~~~~~~~~~-~~~v~d~~~~---~~~~~~~~~~~~~~~-~~~~~--~~~~~l~-~~~~D   76 (376)
                      -+|.|+|+|.+|... +..+ +..   +.+ ++++. ++++   +++.    ++++|.+ + .++  ++.++.+ ...+|
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~---Ga~~Vi~~~-~~~~~~~~~~~----~~~lGa~~v-~~~~~~~~~i~~~~gg~D  244 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDK---GYENLYCLG-RRDRPDPTIDI----IEELDATYV-DSRQTPVEDVPDVYEQMD  244 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTT---CCCEEEEEE-CCCSSCHHHHH----HHHTTCEEE-ETTTSCGGGHHHHSCCEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHc---CCcEEEEEe-CCcccHHHHHH----HHHcCCccc-CCCccCHHHHHHhCCCCC
Confidence            589999999999988 6665 444   776 77654 5444   4433    4456654 1 122  2322111 22689


Q ss_pred             EEEEeCCCCccHHHHHHHHcCCCCCeEEEe----cCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHc
Q 017143           77 VVVVSTPNMTHYQILMDIINHPKPHHVLVE----KPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKS  152 (376)
Q Consensus        77 ~V~i~t~~~~h~~~~~~al~~~~g~~Vl~E----KP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~  152 (376)
                      +|+-++........+.++++.+ |+-|++-    .+...+....  +.+.. .+ ++.+. +........+..+.+++++
T Consensus       245 vvid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~--~~~~~-~~-~~~i~-g~~~~~~~~~~~~~~l~~~  318 (357)
T 2b5w_A          245 FIYEATGFPKHAIQSVQALAPN-GVGALLGVPSDWAFEVDAGAF--HREMV-LH-NKALV-GSVNSHVEHFEAATVTFTK  318 (357)
T ss_dssp             EEEECSCCHHHHHHHHHHEEEE-EEEEECCCCCCCCCCCCHHHH--HHHHH-HT-TCEEE-ECCCCCHHHHHHHHHHHHH
T ss_pred             EEEECCCChHHHHHHHHHHhcC-CEEEEEeCCCCCCceecHHHH--hHHHH-hC-CeEEE-EeccCCHHHHHHHHHHHHh
Confidence            9999998766677888888742 6555553    3344444332  11223 33 44443 3333234567888899988


Q ss_pred             C
Q 017143          153 G  153 (376)
Q Consensus       153 g  153 (376)
                      |
T Consensus       319 g  319 (357)
T 2b5w_A          319 L  319 (357)
T ss_dssp             S
T ss_pred             C
Confidence            7

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=93.19  E-value=0.17  Score=46.52  Aligned_cols=130  Identities=12%  Similarity=0.091  Sum_probs=78.1

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCc-EEEEEeCCChhhHHHHHHHHHhcCCCCCcc------CCHHHHhhC---CCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGV-SVVCIADPHLQSRQQALKLANAFDWPLKVF------PGHQELLDS---GLCD   76 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~-~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~---~~~D   76 (376)
                      -+|.|+|+|.+|...+...+..   +. ++++ +++++++++.    ++++|.+ .++      .++.+.+.+   ..+|
T Consensus       193 ~~VlV~GaG~vG~~aiqlak~~---Ga~~Vi~-~~~~~~~~~~----a~~lGa~-~vi~~~~~~~~~~~~i~~~t~gg~D  263 (373)
T 1p0f_A          193 STCAVFGLGGVGFSAIVGCKAA---GASRIIG-VGTHKDKFPK----AIELGAT-ECLNPKDYDKPIYEVICEKTNGGVD  263 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH---TCSEEEE-ECSCGGGHHH----HHHTTCS-EEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred             CEEEEECCCHHHHHHHHHHHHc---CCCeEEE-ECCCHHHHHH----HHHcCCc-EEEecccccchHHHHHHHHhCCCCC
Confidence            4799999999999877766665   66 6664 5777775443    4456754 222      234443331   2589


Q ss_pred             EEEEeCCCCccHHHHHHHHcCCC-CCeEEEecCC-----CCCHHHHHHHHHHHHhCCCeEEEEeec-cccC-HHHHHHHH
Q 017143           77 VVVVSTPNMTHYQILMDIINHPK-PHHVLVEKPL-----CTTVADCKKVVDAARKRPDILVQVGLE-YRYM-PPVAKLIQ  148 (376)
Q Consensus        77 ~V~i~t~~~~h~~~~~~al~~~~-g~~Vl~EKP~-----a~~~~e~~~l~~~a~~~~~~~~~v~~~-~r~~-p~~~~~k~  148 (376)
                      +|+-++........+.++++. . |+-|++--+.     ..+.      .... .+ . .+ .+.. ..+. ..+..+.+
T Consensus       264 vvid~~g~~~~~~~~~~~l~~-~~G~iv~~G~~~~~~~~~~~~------~~~~-~~-~-~i-~g~~~~~~~~~~~~~~~~  332 (373)
T 1p0f_A          264 YAVECAGRIETMMNALQSTYC-GSGVTVVLGLASPNERLPLDP------LLLL-TG-R-SL-KGSVFGGFKGEEVSRLVD  332 (373)
T ss_dssp             EEEECSCCHHHHHHHHHTBCT-TTCEEEECCCCCTTCCEEECT------HHHH-TT-C-EE-EECSGGGCCGGGHHHHHH
T ss_pred             EEEECCCCHHHHHHHHHHHhc-CCCEEEEEccCCCCCccccCH------HHhc-cC-c-eE-EeeccCCcCHHHHHHHHH
Confidence            999999876667778888872 2 5555553322     1222      1223 22 3 23 3322 2333 46778888


Q ss_pred             HHHcCCCC
Q 017143          149 IVKSGSIG  156 (376)
Q Consensus       149 ~i~~g~iG  156 (376)
                      ++++|+|-
T Consensus       333 l~~~g~i~  340 (373)
T 1p0f_A          333 DYMKKKIN  340 (373)
T ss_dssp             HHHTTSSC
T ss_pred             HHHcCCCC
Confidence            89888763

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=93.16  E-value=0.78  Score=38.18  Aligned_cols=75  Identities=15%  Similarity=0.120  Sum_probs=46.9

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-CC-ccCCHHHH---hhCCCCCEEEE
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LK-VFPGHQEL---LDSGLCDVVVV   80 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~---l~~~~~D~V~i   80 (376)
                      .-+|.=|||| .|...+......  ++.++++ +|.++...+.+++-+++.+++ +. ...|..++   +....+|+|++
T Consensus        42 ~~~vLDiGcG-~G~~~~~la~~~--p~~~v~g-vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~  117 (214)
T 1yzh_A           42 NPIHVEVGSG-KGAFVSGMAKQN--PDINYIG-IDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYL  117 (214)
T ss_dssp             CCEEEEESCT-TSHHHHHHHHHC--TTSEEEE-EESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEE
T ss_pred             CCeEEEEccC-cCHHHHHHHHHC--CCCCEEE-EEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEE
Confidence            3578999998 444333333444  6788887 599998777777666665653 11 12344433   33446899998


Q ss_pred             eCCC
Q 017143           81 STPN   84 (376)
Q Consensus        81 ~t~~   84 (376)
                      .-|.
T Consensus       118 ~~~~  121 (214)
T 1yzh_A          118 NFSD  121 (214)
T ss_dssp             ESCC
T ss_pred             ECCC
Confidence            8664

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=93.15  E-value=0.22  Score=45.34  Aligned_cols=89  Identities=10%  Similarity=0.019  Sum_probs=50.9

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc---CCHHHHhh---CCCCCEEE
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF---PGHQELLD---SGLCDVVV   79 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~---~~~~D~V~   79 (376)
                      -+|.|+|+ |.+|...+...+..  ...++++++  ++++.+    +++ +|.+ .++   .++.+.+.   ...+|+|+
T Consensus       144 ~~VlV~Ga~G~vG~~a~qla~~~--g~~~V~~~~--~~~~~~----~~~-~ga~-~~~~~~~~~~~~~~~~~~~g~Dvv~  213 (349)
T 4a27_A          144 MSVLVHSAGGGVGQAVAQLCSTV--PNVTVFGTA--STFKHE----AIK-DSVT-HLFDRNADYVQEVKRISAEGVDIVL  213 (349)
T ss_dssp             CEEEESSTTSHHHHHHHHHHTTS--TTCEEEEEE--CGGGHH----HHG-GGSS-EEEETTSCHHHHHHHHCTTCEEEEE
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHc--CCcEEEEeC--CHHHHH----HHH-cCCc-EEEcCCccHHHHHHHhcCCCceEEE
Confidence            47999998 89998877766655  467888776  334322    222 5554 222   23433332   23589999


Q ss_pred             EeCCCCccHHHHHHHHcCCCCCeEEEec
Q 017143           80 VSTPNMTHYQILMDIINHPKPHHVLVEK  107 (376)
Q Consensus        80 i~t~~~~h~~~~~~al~~~~g~~Vl~EK  107 (376)
                      -++.... ...+.++++. .|+-|++-.
T Consensus       214 d~~g~~~-~~~~~~~l~~-~G~~v~~G~  239 (349)
T 4a27_A          214 DCLCGDN-TGKGLSLLKP-LGTYILYGS  239 (349)
T ss_dssp             EECC--------CTTEEE-EEEEEEEC-
T ss_pred             ECCCchh-HHHHHHHhhc-CCEEEEECC
Confidence            9987654 3566677764 366677644

>1dpg_A G6PD, glucose 6-phosphate dehydrogenase; oxidoreductase, NADP/NAD, glucose metabolism, oxidoreductase (CHOH(D) - NAD(P)); 2.00A {Leuconostoc mesenteroides} SCOP: c.2.1.3 d.81.1.5 PDB: 1e7y_A* 1e7m_A* 1h93_A 1h94_A* 1h9a_A* 1e77_A* 1h9b_A 2dpg_A*

Probab=93.04  E-value=1.1  Score=42.27  Aligned_cols=120  Identities=13%  Similarity=0.156  Sum_probs=71.8

Q ss_pred             CceeEEEEeC-ChhhH-HHHHHhhhhc-----CCCcEEEEEeCCChhhH---HHH--------------HHHHHhc----
Q 017143            5 DTVKYGIIGM-GMMGR-EHFINLHHLR-----SQGVSVVCIADPHLQSR---QQA--------------LKLANAF----   56 (376)
Q Consensus         5 ~~~~v~iiG~-G~~g~-~~~~~~~~~~-----~~~~~~~~v~d~~~~~~---~~~--------------~~~~~~~----   56 (376)
                      .+.-+.|.|+ |-.++ ..+|+|-++-     ++++.|+|+.-++-+..   +.+              ++|++..    
T Consensus         4 ~~~~~VIFGatGDLA~RKL~PaLy~L~~~g~Lp~~~~iiG~aR~~~~~~~~r~~~~~~l~~~~~~~~~~~~F~~~~~Y~~   83 (485)
T 1dpg_A            4 IKTLVTFFGGTGDLAKRKLYPSVFNLYKKGYLQKHFAIVGTARQALNDDEFKQLVRDCIKDFTDDQAQAEAFIEHFSYRA   83 (485)
T ss_dssp             CCEEEEEETTTSHHHHHTHHHHHHHHHHTTSSCSSEEEEEEESSCCCHHHHHHHHHHHHGGGCSCHHHHHHHHTTEEEEE
T ss_pred             CCeEEEEECCcHHHHHHhHHHHHHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhcccCHHHHHHHHhcCEEec
Confidence            3467888995 76765 5777776552     36799999874432211   111              1222211    


Q ss_pred             -CCC-CCccCCHHHHhhC-------CCCCEEEEeCCCCccHHHHHHHHcCCC-----CCeEEEecCCCCCHHHHHHHHHH
Q 017143           57 -DWP-LKVFPGHQELLDS-------GLCDVVVVSTPNMTHYQILMDIINHPK-----PHHVLVEKPLCTTVADCKKVVDA  122 (376)
Q Consensus        57 -~~~-~~~~~~~~~~l~~-------~~~D~V~i~t~~~~h~~~~~~al~~~~-----g~~Vl~EKP~a~~~~e~~~l~~~  122 (376)
                       ++. ...|..+.+.++.       ..--+.++++||..-..++...-++|-     ..-|.+|||+..+++.|++|-+.
T Consensus        84 ~d~~~~~~~~~L~~~l~~l~~~~~~~~nr~fYLA~pP~~f~~i~~~L~~~gl~~~~g~~RvViEKPFG~DL~SA~~Ln~~  163 (485)
T 1dpg_A           84 HDVTDAASYAVLKEAIEEAADKFDIDGNRIFYMSVAPRFFGTIAKYLKSEGLLADTGYNRLMIEKPFGTSYDTAAELQND  163 (485)
T ss_dssp             CCTTCTTHHHHHHHHHHHHHHHTTCCSCEEEEECSCGGGHHHHHHHHHHTTCSCSSSCEEEEECSCCCSSHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHHHhcCCCCCCCceEEEEeCCCCCchhhHHHHHHH
Confidence             111 1222333334431       123588999999976666655444221     24799999999999999999998


Q ss_pred             HH
Q 017143          123 AR  124 (376)
Q Consensus       123 a~  124 (376)
                      ..
T Consensus       164 l~  165 (485)
T 1dpg_A          164 LE  165 (485)
T ss_dssp             HT
T ss_pred             HH
Confidence            83

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=93.00  E-value=0.23  Score=45.12  Aligned_cols=134  Identities=14%  Similarity=0.125  Sum_probs=76.6

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-C-Cc--cCCHHHHhhC---CCCCEE
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-L-KV--FPGHQELLDS---GLCDVV   78 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~-~~--~~~~~~~l~~---~~~D~V   78 (376)
                      -+|.|+|+ |.+|...+..++..   +.++++ +++++++.+    +++++|.. + ..  ..++.+.+.+   ..+|+|
T Consensus       171 ~~vlV~Ga~ggiG~~~~~~a~~~---Ga~V~~-~~~~~~~~~----~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~v  242 (347)
T 2hcy_A          171 HWVAISGAAGGLGSLAVQYAKAM---GYRVLG-IDGGEGKEE----LFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGV  242 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT---TCEEEE-EECSTTHHH----HHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEE
T ss_pred             CEEEEECCCchHHHHHHHHHHHC---CCcEEE-EcCCHHHHH----HHHHcCCceEEecCccHhHHHHHHHHhCCCCCEE
Confidence            47999998 88999887776665   678775 466666433    33445643 1 11  1345544432   158999


Q ss_pred             EEeCCCCccHHHHHHHHcCCCCCeEEEecCC----CCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCC
Q 017143           79 VVSTPNMTHYQILMDIINHPKPHHVLVEKPL----CTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGS  154 (376)
Q Consensus        79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~----a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~  154 (376)
                      +.++........+.++++. .|+-|++--+-    ..+.      .... .+ ++.+. +........+..+.+++++|.
T Consensus       243 i~~~g~~~~~~~~~~~l~~-~G~iv~~g~~~~~~~~~~~------~~~~-~~-~~~i~-g~~~~~~~~~~~~~~l~~~g~  312 (347)
T 2hcy_A          243 INVSVSEAAIEASTRYVRA-NGTTVLVGMPAGAKCCSDV------FNQV-VK-SISIV-GSYVGNRADTREALDFFARGL  312 (347)
T ss_dssp             EECSSCHHHHHHHTTSEEE-EEEEEECCCCTTCEEEEEH------HHHH-HT-TCEEE-ECCCCCHHHHHHHHHHHHTTS
T ss_pred             EECCCcHHHHHHHHHHHhc-CCEEEEEeCCCCCCCCCCH------HHHh-hC-CcEEE-EccCCCHHHHHHHHHHHHhCC
Confidence            9998865555566666663 25555553322    1222      1223 22 33333 332222345777888888887


Q ss_pred             CCce
Q 017143          155 IGQV  158 (376)
Q Consensus       155 iG~i  158 (376)
                      +-.+
T Consensus       313 l~~~  316 (347)
T 2hcy_A          313 VKSP  316 (347)
T ss_dssp             CCCC
T ss_pred             Cccc
Confidence            7543

>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}

Probab=92.99  E-value=0.12  Score=49.06  Aligned_cols=74  Identities=12%  Similarity=0.144  Sum_probs=55.9

Q ss_pred             CCCCCccCCHHHHhhCC-CCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEee
Q 017143           57 DWPLKVFPGHQELLDSG-LCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGL  135 (376)
Q Consensus        57 ~~~~~~~~~~~~~l~~~-~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~  135 (376)
                      ++|  +|.+|.++.+.+ .+|+++|++|...-.+.+.+|++  +|..++|= .-....++-++|.+.|+++ |+.+ +|.
T Consensus        20 ~~P--v~~~~~~~~~~p~~~DlavI~vPa~~v~~~v~e~~~--~Gv~~vii-s~Gf~~~~~~~l~~~A~~~-g~rl-iGP   92 (480)
T 3dmy_A           20 ALT--QVRRWDSACQKLPDANLALISVAGEYAAELANQALD--RNLNVMMF-SDNVTLEDEIQLKTRAREK-GLLV-MGP   92 (480)
T ss_dssp             CCE--EESSHHHHHHHSTTCCEEEECSCHHHHHHHHHHHHH--TTCEEEEC-CCCCCHHHHHHHHHHHHHT-TCCE-ECS
T ss_pred             CCc--ccchHHHHHhcCCCCCEEEEecCHHHHHHHHHHHHh--cCCCEEEE-CCCCCHHHHHHHHHHHHHc-CCEE-Eec
Confidence            566  888888887764 69999999999999999999999  77776662 2233477778999999554 6554 444


Q ss_pred             cc
Q 017143          136 EY  137 (376)
Q Consensus       136 ~~  137 (376)
                      |+
T Consensus        93 Nc   94 (480)
T 3dmy_A           93 DC   94 (480)
T ss_dssp             SC
T ss_pred             Cc
Confidence            44

>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}

Probab=92.97  E-value=0.38  Score=43.29  Aligned_cols=76  Identities=9%  Similarity=0.148  Sum_probs=53.4

Q ss_pred             CceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCC----ChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEE
Q 017143            5 DTVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADP----HLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVV   79 (376)
Q Consensus         5 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~   79 (376)
                      +.+||++||= +++++..+..+..+   +++++.++-.    +++-.+.+++.+++.|..+..++|.++++++  .|+|+
T Consensus       178 ~glkva~vGD~~nva~Sl~~~~~~~---G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~--aDVvy  252 (340)
T 4ep1_A          178 KGIKLAYVGDGNNVCHSLLLASAKV---GMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILHNPELAVNE--ADFIY  252 (340)
T ss_dssp             TTCEEEEESCCCHHHHHHHHHHHHH---TCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEEESCHHHHHTT--CSEEE
T ss_pred             CCCEEEEECCCchhHHHHHHHHHHc---CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEECCHHHHhCC--CCEEE
Confidence            3589999995 55677788888887   7887765522    2333345666677778665678999999987  89998


Q ss_pred             EeCCCC
Q 017143           80 VSTPNM   85 (376)
Q Consensus        80 i~t~~~   85 (376)
                      .-..-.
T Consensus       253 t~~w~s  258 (340)
T 4ep1_A          253 TDVWMS  258 (340)
T ss_dssp             ECCC--
T ss_pred             ecCccC
Confidence            866543

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=92.94  E-value=0.49  Score=41.90  Aligned_cols=73  Identities=15%  Similarity=0.155  Sum_probs=49.3

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-C-CccCCHHHHhhCCCCCEEEEeCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-L-KVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      .-+|..||||..+...+. +++.  ++.++++| |.+++..+.|++..++.|++ + -...+..++- +..+|+|++..-
T Consensus       123 g~rVLDIGcG~G~~ta~~-lA~~--~ga~V~gI-Dis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~-d~~FDvV~~~a~  197 (298)
T 3fpf_A          123 GERAVFIGGGPLPLTGIL-LSHV--YGMRVNVV-EIEPDIAELSRKVIEGLGVDGVNVITGDETVID-GLEFDVLMVAAL  197 (298)
T ss_dssp             TCEEEEECCCSSCHHHHH-HHHT--TCCEEEEE-ESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG-GCCCSEEEECTT
T ss_pred             cCEEEEECCCccHHHHHH-HHHc--cCCEEEEE-ECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC-CCCcCEEEECCC
Confidence            579999999975432221 3444  67898875 99999888888887776753 1 1234555543 456999997653

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=92.89  E-value=0.16  Score=46.32  Aligned_cols=138  Identities=7%  Similarity=0.054  Sum_probs=77.2

Q ss_pred             eeEEEE-eCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCc--c--CCHHHHhh---CCCCCEE
Q 017143            7 VKYGII-GMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKV--F--PGHQELLD---SGLCDVV   78 (376)
Q Consensus         7 ~~v~ii-G~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~l~---~~~~D~V   78 (376)
                      -+|.|+ |+|.+|...+..++..   +.++++ +++++++++.++    ++|.+ ..  +  .++.+.+.   ...+|+|
T Consensus       169 ~~VlV~Gg~g~iG~~~~~~a~~~---Ga~Vi~-~~~~~~~~~~~~----~lGa~-~~~~~~~~~~~~~~~~~~~~g~Dvv  239 (353)
T 4dup_A          169 ESVLIHGGTSGIGTTAIQLARAF---GAEVYA-TAGSTGKCEACE----RLGAK-RGINYRSEDFAAVIKAETGQGVDII  239 (353)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHT---TCEEEE-EESSHHHHHHHH----HHTCS-EEEETTTSCHHHHHHHHHSSCEEEE
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHc---CCEEEE-EeCCHHHHHHHH----hcCCC-EEEeCCchHHHHHHHHHhCCCceEE
Confidence            478999 5799999887777664   778775 567777544444    44544 11  1  23333332   2358999


Q ss_pred             EEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHH---------HHHHHHH
Q 017143           79 VVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPP---------VAKLIQI  149 (376)
Q Consensus        79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~---------~~~~k~~  149 (376)
                      +-++... ....+..+++. .|+-|++--+....... ..+.... .+ ++.+.-.....+...         +..+.++
T Consensus       240 id~~g~~-~~~~~~~~l~~-~G~iv~~g~~~~~~~~~-~~~~~~~-~~-~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l  314 (353)
T 4dup_A          240 LDMIGAA-YFERNIASLAK-DGCLSIIAFLGGAVAEK-VNLSPIM-VK-RLTVTGSTMRPRTAEEKRAIRDDLLSEVWPL  314 (353)
T ss_dssp             EESCCGG-GHHHHHHTEEE-EEEEEECCCTTCSEEEE-EECHHHH-HT-TCEEEECCSTTSCHHHHHHHHHHHHHHTHHH
T ss_pred             EECCCHH-HHHHHHHHhcc-CCEEEEEEecCCCcccC-CCHHHHH-hc-CceEEEEeccccchhhhHHHHHHHHHHHHHH
Confidence            9998864 56667777774 35555554322111000 0112233 33 444444433333321         5667778


Q ss_pred             HHcCCCCce
Q 017143          150 VKSGSIGQV  158 (376)
Q Consensus       150 i~~g~iG~i  158 (376)
                      +++|.|-.+
T Consensus       315 ~~~g~l~~~  323 (353)
T 4dup_A          315 LEAGTVAPV  323 (353)
T ss_dssp             HHHTSSCCC
T ss_pred             HHCCCccCC
Confidence            888887544

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=92.85  E-value=0.4  Score=43.04  Aligned_cols=88  Identities=18%  Similarity=0.099  Sum_probs=56.3

Q ss_pred             eeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc----CCHH-HHhh---CCCCCE
Q 017143            7 VKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF----PGHQ-ELLD---SGLCDV   77 (376)
Q Consensus         7 ~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~l~---~~~~D~   77 (376)
                      -+|.|+| +|.+|...+..++..   +.++++ +++++++++.+++    +|.. ..+    .++. ++.+   ...+|+
T Consensus       142 ~~vlV~Ga~ggiG~~~~~~a~~~---G~~V~~-~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~~~~~~~~~~~D~  212 (327)
T 1qor_A          142 EQFLFHAAAGGVGLIACQWAKAL---GAKLIG-TVGTAQKAQSALK----AGAW-QVINYREEDLVERLKEITGGKKVRV  212 (327)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHH---TCEEEE-EESSHHHHHHHHH----HTCS-EEEETTTSCHHHHHHHHTTTCCEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHc---CCEEEE-EeCCHHHHHHHHH----cCCC-EEEECCCccHHHHHHHHhCCCCceE
Confidence            4789999 699999888777776   678775 5677765444433    4543 111    2332 2222   235899


Q ss_pred             EEEeCCCCccHHHHHHHHcCCCCCeEEE
Q 017143           78 VVVSTPNMTHYQILMDIINHPKPHHVLV  105 (376)
Q Consensus        78 V~i~t~~~~h~~~~~~al~~~~g~~Vl~  105 (376)
                      |+.++. ......+.++++. .|+-|++
T Consensus       213 vi~~~g-~~~~~~~~~~l~~-~G~iv~~  238 (327)
T 1qor_A          213 VYDSVG-RDTWERSLDCLQR-RGLMVSF  238 (327)
T ss_dssp             EEECSC-GGGHHHHHHTEEE-EEEEEEC
T ss_pred             EEECCc-hHHHHHHHHHhcC-CCEEEEE
Confidence            999998 6667778888874 2555555

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=92.85  E-value=0.29  Score=44.99  Aligned_cols=130  Identities=15%  Similarity=0.140  Sum_probs=77.3

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCc-EEEEEeCCChhhHHHHHHHHHhcCCCCCcc------CCHHHHhhC---CCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGV-SVVCIADPHLQSRQQALKLANAFDWPLKVF------PGHQELLDS---GLCD   76 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~-~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~---~~~D   76 (376)
                      -+|.|+|+|.+|...+..++..   +. ++++ +++++++++.    ++++|.+ .++      +++.+.+.+   ..+|
T Consensus       193 ~~VlV~GaG~vG~~a~qla~~~---Ga~~Vi~-~~~~~~~~~~----~~~lGa~-~vi~~~~~~~~~~~~~~~~~~~g~D  263 (374)
T 2jhf_A          193 STCAVFGLGGVGLSVIMGCKAA---GAARIIG-VDINKDKFAK----AKEVGAT-ECVNPQDYKKPIQEVLTEMSNGGVD  263 (374)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCSEEEE-ECSCGGGHHH----HHHTTCS-EEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred             CEEEEECCCHHHHHHHHHHHHc---CCCeEEE-EcCCHHHHHH----HHHhCCc-eEecccccchhHHHHHHHHhCCCCc
Confidence            4799999999999877766654   66 6664 5777775443    3456654 222      234444332   2589


Q ss_pred             EEEEeCCCCccHHHHHHHHcCCC-CCeEEEecC-----CCCCHHHHHHHHHHHHhCCCeEEEEeec-ccc--CHHHHHHH
Q 017143           77 VVVVSTPNMTHYQILMDIINHPK-PHHVLVEKP-----LCTTVADCKKVVDAARKRPDILVQVGLE-YRY--MPPVAKLI  147 (376)
Q Consensus        77 ~V~i~t~~~~h~~~~~~al~~~~-g~~Vl~EKP-----~a~~~~e~~~l~~~a~~~~~~~~~v~~~-~r~--~p~~~~~k  147 (376)
                      +|+.++........+.++++. . |+-|++--+     +..+..      ... .+ + .+ .+.. ..+  ...+..+.
T Consensus       264 ~vid~~g~~~~~~~~~~~l~~-~~G~iv~~G~~~~~~~~~~~~~------~~~-~~-~-~i-~g~~~~~~~~~~~~~~~~  332 (374)
T 2jhf_A          264 FSFEVIGRLDTMVTALSCCQE-AYGVSVIVGVPPDSQNLSMNPM------LLL-SG-R-TW-KGAIFGGFKSKDSVPKLV  332 (374)
T ss_dssp             EEEECSCCHHHHHHHHHHBCT-TTCEEEECSCCCTTCCEEECTH------HHH-TT-C-EE-EECSGGGCCHHHHHHHHH
T ss_pred             EEEECCCCHHHHHHHHHHhhc-CCcEEEEeccCCCCCccccCHH------HHh-cC-C-eE-EEeccCCCChHHHHHHHH
Confidence            999999876667788888872 2 455554322     122221      223 23 3 33 3332 222  24577788


Q ss_pred             HHHHcCCCC
Q 017143          148 QIVKSGSIG  156 (376)
Q Consensus       148 ~~i~~g~iG  156 (376)
                      +++++|+|-
T Consensus       333 ~l~~~g~i~  341 (374)
T 2jhf_A          333 ADFMAKKFA  341 (374)
T ss_dssp             HHHHTTSSC
T ss_pred             HHHHcCCCC
Confidence            888888763

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=92.85  E-value=0.46  Score=39.98  Aligned_cols=76  Identities=16%  Similarity=0.121  Sum_probs=50.5

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-CC-ccCCHHHH----hhCCCCCEEE
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LK-VFPGHQEL----LDSGLCDVVV   79 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~----l~~~~~D~V~   79 (376)
                      ..+|.=|||| .|...+......  ++..++| +|.++...+.+++-+++.+++ +. ...|..++    +.+..+|.|+
T Consensus        35 ~~~vLDiGcG-~G~~~~~lA~~~--p~~~v~g-iD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~  110 (218)
T 3dxy_A           35 APVTLEIGFG-MGASLVAMAKDR--PEQDFLG-IEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQ  110 (218)
T ss_dssp             CCEEEEESCT-TCHHHHHHHHHC--TTSEEEE-ECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEE
T ss_pred             CCeEEEEeee-ChHHHHHHHHHC--CCCeEEE-EEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEE
Confidence            3578899998 444333333344  7888887 599998887777777666654 22 23577766    4455689999


Q ss_pred             EeCCCC
Q 017143           80 VSTPNM   85 (376)
Q Consensus        80 i~t~~~   85 (376)
                      +..|+.
T Consensus       111 ~~~~~p  116 (218)
T 3dxy_A          111 LFFPDP  116 (218)
T ss_dssp             EESCCC
T ss_pred             EeCCCC
Confidence            886544

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=92.81  E-value=0.3  Score=45.68  Aligned_cols=83  Identities=22%  Similarity=0.288  Sum_probs=51.1

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhC-CCCCEEEEeCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDS-GLCDVVVVSTP   83 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~D~V~i~t~   83 (376)
                      +.-||+|+|.|..|+.++.+++++   +++++. +|+++..  .+.+++.++-+  .-|.|.+.+++- ..+|+|+.. .
T Consensus        34 ~~~~IlIlG~G~lg~~~~~aa~~l---G~~v~v-~d~~~~~--p~~~~ad~~~~--~~~~d~~~l~~~a~~~D~V~~~-~  104 (419)
T 4e4t_A           34 PGAWLGMVGGGQLGRMFCFAAQSM---GYRVAV-LDPDPAS--PAGAVADRHLR--AAYDDEAALAELAGLCEAVSTE-F  104 (419)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT---TCEEEE-ECSCTTC--HHHHHSSEEEC--CCTTCHHHHHHHHHHCSEEEEC-C
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC---CCEEEE-ECCCCcC--chhhhCCEEEE--CCcCCHHHHHHHHhcCCEEEEc-c
Confidence            345999999999999999988887   889764 5776653  35555544322  245665544431 248988743 2


Q ss_pred             CCccHHHHHHHHc
Q 017143           84 NMTHYQILMDIIN   96 (376)
Q Consensus        84 ~~~h~~~~~~al~   96 (376)
                      .+.....+..+-+
T Consensus       105 e~~~~~~~~~l~~  117 (419)
T 4e4t_A          105 ENVPAASLDFLAR  117 (419)
T ss_dssp             TTCCHHHHHHHHT
T ss_pred             CcCCHHHHHHHHc
Confidence            3333344443333

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=92.79  E-value=0.31  Score=44.67  Aligned_cols=130  Identities=17%  Similarity=0.170  Sum_probs=77.4

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCc-EEEEEeCCChhhHHHHHHHHHhcCCCCCcc------CCHHHHhhC---CCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGV-SVVCIADPHLQSRQQALKLANAFDWPLKVF------PGHQELLDS---GLCD   76 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~-~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~---~~~D   76 (376)
                      -+|.|+|+|.+|...+..++..   +. ++++ +++++++++.++    ++|.+ .++      +++.+.+.+   ..+|
T Consensus       192 ~~VlV~GaG~vG~~avqla~~~---Ga~~Vi~-~~~~~~~~~~~~----~lGa~-~vi~~~~~~~~~~~~v~~~~~~g~D  262 (373)
T 2fzw_A          192 SVCAVFGLGGVGLAVIMGCKVA---GASRIIG-VDINKDKFARAK----EFGAT-ECINPQDFSKPIQEVLIEMTDGGVD  262 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH---TCSEEEE-ECSCGGGHHHHH----HHTCS-EEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred             CEEEEECCCHHHHHHHHHHHHc---CCCeEEE-EcCCHHHHHHHH----HcCCc-eEeccccccccHHHHHHHHhCCCCC
Confidence            4799999999999887766665   66 6664 577777555444    45654 222      234443332   2589


Q ss_pred             EEEEeCCCCccHHHHHHHHcCCC-CCeEEEecC-----CCCCHHHHHHHHHHHHhCCCeEEEEeec-ccc--CHHHHHHH
Q 017143           77 VVVVSTPNMTHYQILMDIINHPK-PHHVLVEKP-----LCTTVADCKKVVDAARKRPDILVQVGLE-YRY--MPPVAKLI  147 (376)
Q Consensus        77 ~V~i~t~~~~h~~~~~~al~~~~-g~~Vl~EKP-----~a~~~~e~~~l~~~a~~~~~~~~~v~~~-~r~--~p~~~~~k  147 (376)
                      +|+.++........+.++++. . |+-|++--+     +..+.      .... .+ . .+ .+.. ..+  ...+..+.
T Consensus       263 ~vid~~g~~~~~~~~~~~l~~-~~G~iv~~G~~~~~~~~~~~~------~~~~-~~-~-~i-~g~~~~~~~~~~~~~~~~  331 (373)
T 2fzw_A          263 YSFECIGNVKVMRAALEACHK-GWGVSVVVGVAASGEEIATRP------FQLV-TG-R-TW-KGTAFGGWKSVESVPKLV  331 (373)
T ss_dssp             EEEECSCCHHHHHHHHHTBCT-TTCEEEECSCCCTTCCEEECT------HHHH-TT-C-EE-EECSGGGCCHHHHHHHHH
T ss_pred             EEEECCCcHHHHHHHHHhhcc-CCcEEEEEecCCCCceeeeCH------HHHh-cC-C-EE-EEeccCCCCcHHHHHHHH
Confidence            999999876667778888872 2 555554322     12222      1233 23 3 22 3332 222  34577788


Q ss_pred             HHHHcCCCC
Q 017143          148 QIVKSGSIG  156 (376)
Q Consensus       148 ~~i~~g~iG  156 (376)
                      +++++|.+-
T Consensus       332 ~l~~~g~l~  340 (373)
T 2fzw_A          332 SEYMSKKIK  340 (373)
T ss_dssp             HHHHTTSSC
T ss_pred             HHHHcCCCC
Confidence            888887764

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=92.75  E-value=0.13  Score=43.09  Aligned_cols=94  Identities=16%  Similarity=0.151  Sum_probs=55.7

Q ss_pred             eeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCc-cCCHHHHhhCCCCCEEEEeCCC
Q 017143            7 VKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKV-FPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         7 ~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      |||.|.| +|++|+..+..|.+.   +.+|+++ +|++++.+.... ..-...++.- .++++++++  ++|+|+.+...
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~---g~~V~~~-~R~~~~~~~~~~-~~~~~~D~~d~~~~~~~~~~--~~d~vi~~ag~   73 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTT---DYQIYAG-ARKVEQVPQYNN-VKAVHFDVDWTPEEMAKQLH--GMDAIINVSGS   73 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTS---SCEEEEE-ESSGGGSCCCTT-EEEEECCTTSCHHHHHTTTT--TCSEEEECCCC
T ss_pred             CeEEEECCCCHHHHHHHHHHHHC---CCEEEEE-ECCccchhhcCC-ceEEEecccCCHHHHHHHHc--CCCEEEECCcC
Confidence            3899999 699999998888874   7888865 566653211100 0000111111 123444454  48999988765


Q ss_pred             CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhC
Q 017143           85 MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKR  126 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~  126 (376)
                      ..                   +..+..+..-...+.+++++.
T Consensus        74 ~~-------------------~~~~~~n~~~~~~l~~a~~~~   96 (219)
T 3dqp_A           74 GG-------------------KSLLKVDLYGAVKLMQAAEKA   96 (219)
T ss_dssp             TT-------------------SSCCCCCCHHHHHHHHHHHHT
T ss_pred             CC-------------------CCcEeEeHHHHHHHHHHHHHh
Confidence            43                   124556677777788888544

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=92.73  E-value=1.6  Score=36.39  Aligned_cols=75  Identities=11%  Similarity=0.031  Sum_probs=47.7

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-CC-ccCCHHHH---hhCCCCCEEEE
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LK-VFPGHQEL---LDSGLCDVVVV   80 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~---l~~~~~D~V~i   80 (376)
                      ..+|.=|||| .|...+......  ++.+++| +|.++..++.+++-+++.+++ +. ...|..++   +.+..+|.|++
T Consensus        39 ~~~vLDiGcG-~G~~~~~la~~~--p~~~v~g-iD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~  114 (213)
T 2fca_A           39 NPIHIEVGTG-KGQFISGMAKQN--PDINYIG-IELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYL  114 (213)
T ss_dssp             CCEEEEECCT-TSHHHHHHHHHC--TTSEEEE-ECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEE
T ss_pred             CceEEEEecC-CCHHHHHHHHHC--CCCCEEE-EEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEE
Confidence            3578889999 344333323334  6888887 599998777777766666654 21 22455443   44556899988


Q ss_pred             eCCC
Q 017143           81 STPN   84 (376)
Q Consensus        81 ~t~~   84 (376)
                      .-|+
T Consensus       115 ~~~~  118 (213)
T 2fca_A          115 NFSD  118 (213)
T ss_dssp             ESCC
T ss_pred             ECCC
Confidence            7654

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=92.73  E-value=0.34  Score=44.96  Aligned_cols=90  Identities=17%  Similarity=0.157  Sum_probs=55.9

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCc-EEEEEeCCChhhHHHHHHHHHhcCCCCCcc--CCH-HHHhh----CCCCCEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGV-SVVCIADPHLQSRQQALKLANAFDWPLKVF--PGH-QELLD----SGLCDVV   78 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~-~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~l~----~~~~D~V   78 (376)
                      -+|.|+|+|.+|...+..++..   +. ++++ +++++++++    +++++|..+-.+  .++ .+.+.    ...+|+|
T Consensus       187 ~~VlV~GaG~vG~~aiqlak~~---Ga~~Vi~-~~~~~~~~~----~a~~lGa~~i~~~~~~~~~~~~~~~~~g~g~Dvv  258 (398)
T 2dph_A          187 SHVYIAGAGPVGRCAAAGARLL---GAACVIV-GDQNPERLK----LLSDAGFETIDLRNSAPLRDQIDQILGKPEVDCG  258 (398)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH---TCSEEEE-EESCHHHHH----HHHTTTCEEEETTSSSCHHHHHHHHHSSSCEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHc---CCCEEEE-EcCCHHHHH----HHHHcCCcEEcCCCcchHHHHHHHHhCCCCCCEE
Confidence            4799999999999877766665   66 7765 566776433    445666531112  222 22222    2258999


Q ss_pred             EEeCCCCc--------------cHHHHHHHHcCCCCCeEEE
Q 017143           79 VVSTPNMT--------------HYQILMDIINHPKPHHVLV  105 (376)
Q Consensus        79 ~i~t~~~~--------------h~~~~~~al~~~~g~~Vl~  105 (376)
                      +-++....              ..+.+.++++.+ |+-|++
T Consensus       259 id~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-G~iv~~  298 (398)
T 2dph_A          259 VDAVGFEAHGLGDEANTETPNGALNSLFDVVRAG-GAIGIP  298 (398)
T ss_dssp             EECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEE-EEEECC
T ss_pred             EECCCCccccccccccccccHHHHHHHHHHHhcC-CEEEEe
Confidence            99998653              467778888732 444443

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=92.71  E-value=0.27  Score=43.79  Aligned_cols=73  Identities=23%  Similarity=0.237  Sum_probs=43.8

Q ss_pred             eeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCC--ChhhHH-HHHHHHHh--cCCCCCcc-CCHHHHhhCCCCCEEE
Q 017143            7 VKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADP--HLQSRQ-QALKLANA--FDWPLKVF-PGHQELLDSGLCDVVV   79 (376)
Q Consensus         7 ~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~--~~~~~~-~~~~~~~~--~~~~~~~~-~~~~~~l~~~~~D~V~   79 (376)
                      +||+|+| +|++|...+..+...  +.+.-+.++|+  ++++.+ .+..+...  ++.+++.. ++ .+.+++  .|+|+
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~--~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~-~~a~~~--aDvVi   75 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALR--DIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGG-YEDTAG--SDVVV   75 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT--TCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECC-GGGGTT--CSEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhC--CCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCC-HHHhCC--CCEEE
Confidence            5899999 999999877777664  33332457898  765432 12333221  12222222 34 445554  89999


Q ss_pred             EeCCC
Q 017143           80 VSTPN   84 (376)
Q Consensus        80 i~t~~   84 (376)
                      ++...
T Consensus        76 ~~ag~   80 (303)
T 1o6z_A           76 ITAGI   80 (303)
T ss_dssp             ECCCC
T ss_pred             EcCCC
Confidence            99864

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=92.68  E-value=0.81  Score=37.92  Aligned_cols=71  Identities=14%  Similarity=0.131  Sum_probs=45.5

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC--CCc-cCCHHHHhh-CCCCCEEEEe
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP--LKV-FPGHQELLD-SGLCDVVVVS   81 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~l~-~~~~D~V~i~   81 (376)
                      .-+|.-||||. |..-+ .++..   +.++++ +|.+++..+.+++.++++|++  +.. ..|..+.+. .+.+|+|++.
T Consensus        56 ~~~vLDlGcG~-G~~~~-~la~~---~~~v~~-vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~  129 (204)
T 3njr_A           56 GELLWDIGGGS-GSVSV-EWCLA---GGRAIT-IEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIG  129 (204)
T ss_dssp             TCEEEEETCTT-CHHHH-HHHHT---TCEEEE-EESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEEC
T ss_pred             CCEEEEecCCC-CHHHH-HHHHc---CCEEEE-EeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEEC
Confidence            35899999995 54332 23332   567776 699999887777777777764  222 345655443 3468998865


Q ss_pred             C
Q 017143           82 T   82 (376)
Q Consensus        82 t   82 (376)
                      .
T Consensus       130 ~  130 (204)
T 3njr_A          130 G  130 (204)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=92.67  E-value=0.28  Score=45.13  Aligned_cols=130  Identities=15%  Similarity=0.178  Sum_probs=77.1

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCc-EEEEEeCCChhhHHHHHHHHHhcCCCCCcc------CCHHHHhh---CCCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGV-SVVCIADPHLQSRQQALKLANAFDWPLKVF------PGHQELLD---SGLCD   76 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~-~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~---~~~~D   76 (376)
                      -+|.|+|+|.+|...+..++..   +. ++++ +++++++++.    ++++|.+ .++      +++.+.+.   ...+|
T Consensus       197 ~~VlV~GaG~vG~~aiqlak~~---Ga~~Vi~-~~~~~~~~~~----a~~lGa~-~vi~~~~~~~~~~~~v~~~~~~g~D  267 (376)
T 1e3i_A          197 STCAVFGLGCVGLSAIIGCKIA---GASRIIA-IDINGEKFPK----AKALGAT-DCLNPRELDKPVQDVITELTAGGVD  267 (376)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCSEEEE-ECSCGGGHHH----HHHTTCS-EEECGGGCSSCHHHHHHHHHTSCBS
T ss_pred             CEEEEECCCHHHHHHHHHHHHc---CCCeEEE-EcCCHHHHHH----HHHhCCc-EEEccccccchHHHHHHHHhCCCcc
Confidence            4799999999999877766654   66 6665 5777775443    4456654 222      23444332   12689


Q ss_pred             EEEEeCCCCccHHHHHHHHcCCC-CCeEEEec---CCCCCHHHHHHHHHHHHhCCCeEEEEeec-ccc--CHHHHHHHHH
Q 017143           77 VVVVSTPNMTHYQILMDIINHPK-PHHVLVEK---PLCTTVADCKKVVDAARKRPDILVQVGLE-YRY--MPPVAKLIQI  149 (376)
Q Consensus        77 ~V~i~t~~~~h~~~~~~al~~~~-g~~Vl~EK---P~a~~~~e~~~l~~~a~~~~~~~~~v~~~-~r~--~p~~~~~k~~  149 (376)
                      +|+-++........+.++++. . |+-|++--   ++..+.      .... .+ + .+ .+.. ..+  ...+..+.++
T Consensus       268 vvid~~G~~~~~~~~~~~l~~-~~G~iv~~G~~~~~~~~~~------~~~~-~~-~-~i-~g~~~~~~~~~~~~~~~~~l  336 (376)
T 1e3i_A          268 YSLDCAGTAQTLKAAVDCTVL-GWGSCTVVGAKVDEMTIPT------VDVI-LG-R-SI-NGTFFGGWKSVDSVPNLVSD  336 (376)
T ss_dssp             EEEESSCCHHHHHHHHHTBCT-TTCEEEECCCSSSEEEEEH------HHHH-TT-C-EE-EECSGGGCCHHHHHHHHHHH
T ss_pred             EEEECCCCHHHHHHHHHHhhc-CCCEEEEECCCCCccccCH------HHhh-cc-C-eE-EEEecCCCCcHHHHHHHHHH
Confidence            999999876667778888872 2 45555432   222222      2233 23 3 33 3322 222  3457778888


Q ss_pred             HHcCCCC
Q 017143          150 VKSGSIG  156 (376)
Q Consensus       150 i~~g~iG  156 (376)
                      +++|+|-
T Consensus       337 ~~~g~i~  343 (376)
T 1e3i_A          337 YKNKKFD  343 (376)
T ss_dssp             HHTTSSC
T ss_pred             HHcCCCC
Confidence            8888764

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=92.63  E-value=0.37  Score=43.39  Aligned_cols=140  Identities=11%  Similarity=0.029  Sum_probs=76.0

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-CCcc---CCHHHHhhC---CCCCEE
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LKVF---PGHQELLDS---GLCDVV   78 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~l~~---~~~D~V   78 (376)
                      -++.|+|+ |.+|...+..++..   +.++++ +++++++++.+    +++|.. +-.+   .++.+.+..   ..+|+|
T Consensus       147 ~~vlV~Ga~ggiG~~~~~~~~~~---G~~V~~-~~~~~~~~~~~----~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~v  218 (333)
T 1v3u_A          147 ETVLVSAAAGAVGSVVGQIAKLK---GCKVVG-AAGSDEKIAYL----KQIGFDAAFNYKTVNSLEEALKKASPDGYDCY  218 (333)
T ss_dssp             CEEEEESTTBHHHHHHHHHHHHT---TCEEEE-EESSHHHHHHH----HHTTCSEEEETTSCSCHHHHHHHHCTTCEEEE
T ss_pred             CEEEEecCCCcHHHHHHHHHHHC---CCEEEE-EeCCHHHHHHH----HhcCCcEEEecCCHHHHHHHHHHHhCCCCeEE
Confidence            47999997 99999887777665   678775 56776643333    455543 1011   345444432   358999


Q ss_pred             EEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCH-H---HHHHHHHHHHhCCCeEEEEeecccc-----CHHHHHHHHH
Q 017143           79 VVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTV-A---DCKKVVDAARKRPDILVQVGLEYRY-----MPPVAKLIQI  149 (376)
Q Consensus        79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~-~---e~~~l~~~a~~~~~~~~~v~~~~r~-----~p~~~~~k~~  149 (376)
                      +.++... ....+.++++. .|+-|++-.+...+. .   ....+.... .+ ++.+.-.+..++     ...+..+.++
T Consensus       219 i~~~g~~-~~~~~~~~l~~-~G~~v~~g~~~~~~~~~~~~~~~~~~~~~-~~-~~~i~g~~~~~~~~~~~~~~~~~~~~l  294 (333)
T 1v3u_A          219 FDNVGGE-FLNTVLSQMKD-FGKIAICGAISVYNRMDQLPPGPSPESII-YK-QLRIEGFIVYRWQGDVREKALRDLMKW  294 (333)
T ss_dssp             EESSCHH-HHHHHHTTEEE-EEEEEECCCCC-------CCBCCCHHHHH-HT-TCEEEECCGGGCCTHHHHHHHHHHHHH
T ss_pred             EECCChH-HHHHHHHHHhc-CCEEEEEeccccccCCCCCCCCcCHHHHh-hc-CceEEEEehhhcchHHHHHHHHHHHHH
Confidence            9888753 34555566663 266666543211000 0   000122333 33 444443333333     3345667888


Q ss_pred             HHcCCCCce
Q 017143          150 VKSGSIGQV  158 (376)
Q Consensus       150 i~~g~iG~i  158 (376)
                      +++|++--.
T Consensus       295 ~~~g~l~~~  303 (333)
T 1v3u_A          295 VLEGKIQYH  303 (333)
T ss_dssp             HHTTSSCCC
T ss_pred             HHCCCccCc
Confidence            898887543

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=92.62  E-value=0.42  Score=43.68  Aligned_cols=89  Identities=12%  Similarity=0.109  Sum_probs=56.8

Q ss_pred             eeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc----CCHHHHhhC---CCCCEE
Q 017143            7 VKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF----PGHQELLDS---GLCDVV   78 (376)
Q Consensus         7 ~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~---~~~D~V   78 (376)
                      -+|.|+| +|.+|...+..++..   +.+++++ ++++++++    +++++|.+ .++    .++.+.+..   ..+|+|
T Consensus       165 ~~VlV~Ga~G~iG~~~~q~a~~~---Ga~Vi~~-~~~~~~~~----~~~~~Ga~-~~~~~~~~~~~~~~~~~~~~g~D~v  235 (362)
T 2c0c_A          165 KKVLVTAAAGGTGQFAMQLSKKA---KCHVIGT-CSSDEKSA----FLKSLGCD-RPINYKTEPVGTVLKQEYPEGVDVV  235 (362)
T ss_dssp             CEEEETTTTBTTHHHHHHHHHHT---TCEEEEE-ESSHHHHH----HHHHTTCS-EEEETTTSCHHHHHHHHCTTCEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHhC---CCEEEEE-ECCHHHHH----HHHHcCCc-EEEecCChhHHHHHHHhcCCCCCEE
Confidence            4799999 699999877766664   6787754 56666433    33456654 221    244444432   358999


Q ss_pred             EEeCCCCccHHHHHHHHcCCCCCeEEEe
Q 017143           79 VVSTPNMTHYQILMDIINHPKPHHVLVE  106 (376)
Q Consensus        79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~E  106 (376)
                      +-++.. .....+.++++. .|+-|++-
T Consensus       236 id~~g~-~~~~~~~~~l~~-~G~iv~~g  261 (362)
T 2c0c_A          236 YESVGG-AMFDLAVDALAT-KGRLIVIG  261 (362)
T ss_dssp             EECSCT-HHHHHHHHHEEE-EEEEEECC
T ss_pred             EECCCH-HHHHHHHHHHhc-CCEEEEEe
Confidence            999886 456667777774 36556553

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=92.51  E-value=0.37  Score=45.66  Aligned_cols=87  Identities=16%  Similarity=0.077  Sum_probs=58.0

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCH-HHHhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGH-QELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~D~V~i~t~~   84 (376)
                      ..+|.|||.|..|..-+..|.+.   +.+++. ++++...  ..+++.++.++. -....+ ++.|.  +.|+|+++|..
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~~---ga~V~v-i~~~~~~--~~~~l~~~~~i~-~~~~~~~~~~l~--~~~lVi~at~~   82 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLEA---GARLTV-NALTFIP--QFTVWANEGMLT-LVEGPFDETLLD--SCWLAIAATDD   82 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT---TBEEEE-EESSCCH--HHHHHHTTTSCE-EEESSCCGGGGT--TCSEEEECCSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC---cCEEEE-EcCCCCH--HHHHHHhcCCEE-EEECCCCccccC--CccEEEEcCCC
Confidence            46899999999999888888775   778774 4554332  445555545554 111222 22343  48999998887


Q ss_pred             C-ccHHHHHHHHcCCCCCeE
Q 017143           85 M-THYQILMDIINHPKPHHV  103 (376)
Q Consensus        85 ~-~h~~~~~~al~~~~g~~V  103 (376)
                      . ....++..|-+  +|+.|
T Consensus        83 ~~~n~~i~~~a~~--~~i~v  100 (457)
T 1pjq_A           83 DTVNQRVSDAAES--RRIFC  100 (457)
T ss_dssp             HHHHHHHHHHHHH--TTCEE
T ss_pred             HHHHHHHHHHHHH--cCCEE
Confidence            6 47777778888  77776

>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*

Probab=92.45  E-value=0.52  Score=39.55  Aligned_cols=87  Identities=11%  Similarity=-0.026  Sum_probs=50.5

Q ss_pred             eeEEEEeCChhh--HHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCc-----cCC-------HHHHhhC
Q 017143            7 VKYGIIGMGMMG--REHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKV-----FPG-------HQELLDS   72 (376)
Q Consensus         7 ~~v~iiG~G~~g--~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~-----~~~-------~~~~l~~   72 (376)
                      +||+|++.|.-.  +..+.++... .-+.++++|+...++.  ...+.|+++|+|+..     |.+       +.+.|+.
T Consensus         1 ~ri~vl~Sg~gsnl~ali~~~~~~-~~~~~i~~Vis~~~~~--~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~   77 (212)
T 1jkx_A            1 MNIVVLISGNGSNLQAIIDACKTN-KIKGTVRAVFSNKADA--FGLERARQAGIATHTLIASAFDSREAYDRELIHEIDM   77 (212)
T ss_dssp             CEEEEEESSCCHHHHHHHHHHHTT-SSSSEEEEEEESCTTC--HHHHHHHHTTCEEEECCGGGCSSHHHHHHHHHHHHGG
T ss_pred             CEEEEEEECCcHHHHHHHHHHHcC-CCCceEEEEEeCCCch--HHHHHHHHcCCcEEEeCcccccchhhccHHHHHHHHh
Confidence            478999887533  2333333332 1257888888654443  467888999998322     222       2244556


Q ss_pred             CCCCEEEEeCCCCccHHHHHHHHc
Q 017143           73 GLCDVVVVSTPNMTHYQILMDIIN   96 (376)
Q Consensus        73 ~~~D~V~i~t~~~~h~~~~~~al~   96 (376)
                      .++|+++++.....=.+-++...+
T Consensus        78 ~~~Dliv~agy~~il~~~~l~~~~  101 (212)
T 1jkx_A           78 YAPDVVVLAGFMRILSPAFVSHYA  101 (212)
T ss_dssp             GCCSEEEESSCCSCCCHHHHHHTT
T ss_pred             cCCCEEEEeChhhhCCHHHHhhcc
Confidence            679999988765433333334333

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=92.38  E-value=0.55  Score=45.30  Aligned_cols=35  Identities=23%  Similarity=0.260  Sum_probs=29.7

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL   43 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~   43 (376)
                      .-||.|||+|..|...+..|...   ++.-+.++|.|.
T Consensus        32 ~~~VlvvG~GGlGseiak~La~a---GVg~itlvD~D~   66 (531)
T 1tt5_A           32 SAHVCLINATATGTEILKNLVLP---GIGSFTIIDGNQ   66 (531)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHTT---TCSEEEEECCCB
T ss_pred             cCeEEEECcCHHHHHHHHHHHHc---CCCeEEEEeCCE
Confidence            46999999999999999988885   777777889865

>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}

Probab=92.35  E-value=0.62  Score=40.77  Aligned_cols=80  Identities=14%  Similarity=0.226  Sum_probs=63.4

Q ss_pred             hhhHHHHHHHHHhcCCCC--CccC--CHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHH
Q 017143           43 LQSRQQALKLANAFDWPL--KVFP--GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKK  118 (376)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~--~~~~--~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~  118 (376)
                      .+....++++++++|+++  ..++  +.+ ++++- +|++-|++.+-.+.++..++.+  -||+|++-++++.+++|...
T Consensus        88 ~~gl~~l~~~~~~~Gl~~~te~~d~~~~~-~l~~~-vd~~kIgs~~~~n~~ll~~~a~--~~kPV~lk~G~~~t~~ei~~  163 (276)
T 1vs1_A           88 LEGLKLLRRAGDEAGLPVVTEVLDPRHVE-TVSRY-ADMLQIGARNMQNFPLLREVGR--SGKPVLLKRGFGNTVEELLA  163 (276)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEECCCGGGHH-HHHHH-CSEEEECGGGTTCHHHHHHHHH--HTCCEEEECCTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcEEEecCCHHHHH-HHHHh-CCeEEECcccccCHHHHHHHHc--cCCeEEEcCCCCCCHHHHHH
Confidence            344456778888999982  3333  333 44444 8999999999999999999998  88999999999999999988


Q ss_pred             HHHHHHhC
Q 017143          119 VVDAARKR  126 (376)
Q Consensus       119 l~~~a~~~  126 (376)
                      -++.+...
T Consensus       164 Ave~i~~~  171 (276)
T 1vs1_A          164 AAEYILLE  171 (276)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHc
Confidence            88887544

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=92.29  E-value=0.33  Score=44.54  Aligned_cols=131  Identities=14%  Similarity=0.165  Sum_probs=78.0

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCc-EEEEEeCCChhhHHHHHHHHHhcCCCCCcc------CCHHHHhhC---CCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGV-SVVCIADPHLQSRQQALKLANAFDWPLKVF------PGHQELLDS---GLCD   76 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~-~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~---~~~D   76 (376)
                      -+|.|+|+|.+|...+..++..   +. ++++ +++++++++.    ++++|.+ .++      +++.+.+.+   ..+|
T Consensus       194 ~~VlV~GaG~vG~~a~qla~~~---Ga~~Vi~-~~~~~~~~~~----~~~lGa~-~vi~~~~~~~~~~~~~~~~~~~g~D  264 (374)
T 1cdo_A          194 STCAVFGLGAVGLAAVMGCHSA---GAKRIIA-VDLNPDKFEK----AKVFGAT-DFVNPNDHSEPISQVLSKMTNGGVD  264 (374)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCSEEEE-ECSCGGGHHH----HHHTTCC-EEECGGGCSSCHHHHHHHHHTSCBS
T ss_pred             CEEEEECCCHHHHHHHHHHHHc---CCCEEEE-EcCCHHHHHH----HHHhCCc-eEEeccccchhHHHHHHHHhCCCCC
Confidence            4799999999999877766654   66 6665 5777775443    3456654 222      234444332   2589


Q ss_pred             EEEEeCCCCccHHHHHHHHcCCC-CCeEEEecC----CCCCHHHHHHHHHHHHhCCCeEEEEeecccc--CHHHHHHHHH
Q 017143           77 VVVVSTPNMTHYQILMDIINHPK-PHHVLVEKP----LCTTVADCKKVVDAARKRPDILVQVGLEYRY--MPPVAKLIQI  149 (376)
Q Consensus        77 ~V~i~t~~~~h~~~~~~al~~~~-g~~Vl~EKP----~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~--~p~~~~~k~~  149 (376)
                      +|+-++........+.++++. . |+-|++--+    +..+..      ... .+ . .+.-.+...+  ...+..+.++
T Consensus       265 ~vid~~g~~~~~~~~~~~l~~-~~G~iv~~G~~~~~~~~~~~~------~~~-~~-~-~i~g~~~~~~~~~~~~~~~~~l  334 (374)
T 1cdo_A          265 FSLECVGNVGVMRNALESCLK-GWGVSVLVGWTDLHDVATRPI------QLI-AG-R-TWKGSMFGGFKGKDGVPKMVKA  334 (374)
T ss_dssp             EEEECSCCHHHHHHHHHTBCT-TTCEEEECSCCSSSCEEECHH------HHH-TT-C-EEEECSGGGCCHHHHHHHHHHH
T ss_pred             EEEECCCCHHHHHHHHHHhhc-CCcEEEEEcCCCCCCcccCHH------HHh-cC-C-eEEEEecCCCCcHHHHHHHHHH
Confidence            999999876667778888872 2 565655332    222222      233 23 3 3322222222  3467788888


Q ss_pred             HHcCCCC
Q 017143          150 VKSGSIG  156 (376)
Q Consensus       150 i~~g~iG  156 (376)
                      +++|+|-
T Consensus       335 ~~~g~l~  341 (374)
T 1cdo_A          335 YLDKKVK  341 (374)
T ss_dssp             HHTTSSC
T ss_pred             HHcCCCC
Confidence            8888763

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=92.17  E-value=0.19  Score=43.93  Aligned_cols=69  Identities=13%  Similarity=-0.063  Sum_probs=44.0

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC--CccCCHHHHhhCCCCCEEEEeC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL--KVFPGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~D~V~i~t   82 (376)
                      +++||.|.|+|++|...+..|.+.   +.+|+++ ++++.+.   ..+.. .++..  --.++++  +  .++|+|+-+.
T Consensus         4 m~~~ilVtGaG~iG~~l~~~L~~~---g~~V~~~-~r~~~~~---~~~~~-~~~~~~~~D~~d~~--~--~~~d~vi~~a   71 (286)
T 3ius_A            4 MTGTLLSFGHGYTARVLSRALAPQ---GWRIIGT-SRNPDQM---EAIRA-SGAEPLLWPGEEPS--L--DGVTHLLIST   71 (286)
T ss_dssp             -CCEEEEETCCHHHHHHHHHHGGG---TCEEEEE-ESCGGGH---HHHHH-TTEEEEESSSSCCC--C--TTCCEEEECC
T ss_pred             CcCcEEEECCcHHHHHHHHHHHHC---CCEEEEE-EcChhhh---hhHhh-CCCeEEEecccccc--c--CCCCEEEECC
Confidence            357999999999999999888875   7888875 5666633   23222 23320  0112233  3  4589999887


Q ss_pred             CCC
Q 017143           83 PNM   85 (376)
Q Consensus        83 ~~~   85 (376)
                      ...
T Consensus        72 ~~~   74 (286)
T 3ius_A           72 APD   74 (286)
T ss_dssp             CCB
T ss_pred             Ccc
Confidence            653

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=92.15  E-value=0.19  Score=44.58  Aligned_cols=75  Identities=15%  Similarity=0.186  Sum_probs=47.5

Q ss_pred             CceeEEEEeCChhhHH---HHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC----C-------HHHHh
Q 017143            5 DTVKYGIIGMGMMGRE---HFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP----G-------HQELL   70 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~---~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~----~-------~~~~l   70 (376)
                      .++||+|.+.|. |..   .+.+.+.. .-.+++++|++..++    ++++|+++|+|+....    +       +.++|
T Consensus       104 ~~~ri~vl~Sg~-g~nl~~ll~~~~~g-~l~~~I~~Visn~~~----~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l  177 (302)
T 3o1l_A          104 QKKRVVLMASRE-SHCLADLLHRWHSD-ELDCDIACVISNHQD----LRSMVEWHDIPYYHVPVDPKDKEPAFAEVSRLV  177 (302)
T ss_dssp             SCCEEEEEECSC-CHHHHHHHHHHHTT-CSCSEEEEEEESSST----THHHHHTTTCCEEECCCCSSCCHHHHHHHHHHH
T ss_pred             CCcEEEEEEeCC-chhHHHHHHHHHCC-CCCcEEEEEEECcHH----HHHHHHHcCCCEEEcCCCcCCHHHHHHHHHHHH
Confidence            478999999986 432   22222221 125799999876665    4567889999832221    1       23555


Q ss_pred             hCCCCCEEEEeCCCC
Q 017143           71 DSGLCDVVVVSTPNM   85 (376)
Q Consensus        71 ~~~~~D~V~i~t~~~   85 (376)
                      +..++|+|+++.--.
T Consensus       178 ~~~~~DliVlagym~  192 (302)
T 3o1l_A          178 GHHQADVVVLARYMQ  192 (302)
T ss_dssp             HHTTCSEEEESSCCS
T ss_pred             HHhCCCEEEHhHhhh
Confidence            666799999887543

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=92.09  E-value=1.8  Score=40.21  Aligned_cols=114  Identities=19%  Similarity=0.326  Sum_probs=70.1

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCC----------ChhhHHHHHHHHHhcCCCCCccC-----CHHHH
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADP----------HLQSRQQALKLANAFDWPLKVFP-----GHQEL   69 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~----------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~   69 (376)
                      +..+|+|.|.|.+|...+..|.+.  .+.+|++|+|.          +.+   .+.++.++.+- +.-|.     +.+++
T Consensus       208 ~g~~vaVqG~GnVG~~~a~~L~e~--~GakvVavsD~~G~i~dp~Gld~~---~l~~~~~~~g~-l~~y~~a~~~~~~ei  281 (415)
T 2tmg_A          208 KKATVAVQGFGNVGQFAALLISQE--LGSKVVAVSDSRGGIYNPEGFDVE---ELIRYKKEHGT-VVTYPKGERITNEEL  281 (415)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT--TCCEEEEEECSSCEEECTTCCCHH---HHHHHHHHSSC-STTCSSSEEECHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHh--cCCEEEEEEeCCCeEECCCCCCHH---HHHHHHHhhCC-cccCCCceEcCchhh
Confidence            347999999999998877777762  38999999998          454   45555555431 11222     45677


Q ss_pred             hhCCCCCEEEEeCCC-CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 017143           70 LDSGLCDVVVVSTPN-MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVG  134 (376)
Q Consensus        70 l~~~~~D~V~i~t~~-~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~  134 (376)
                      +.. ++|+++=|+.. ..+.+-+.+ |+    ..+.+|--=.....++.++.+   ++ |+.+...
T Consensus       282 l~~-~~DIliP~A~~n~i~~~~a~~-l~----ak~V~EgAN~p~t~~a~~~l~---~~-Gi~~~PD  337 (415)
T 2tmg_A          282 LEL-DVDILVPAALEGAIHAGNAER-IK----AKAVVEGANGPTTPEADEILS---RR-GILVVPD  337 (415)
T ss_dssp             TTC-SCSEEEECSSTTSBCHHHHTT-CC----CSEEECCSSSCBCHHHHHHHH---HT-TCEEECH
T ss_pred             hcC-CCcEEEecCCcCccCcccHHH-cC----CeEEEeCCCcccCHHHHHHHH---HC-CCEEECh
Confidence            664 59999988764 344433332 23    347777622222255666643   44 6665533

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=92.08  E-value=0.14  Score=45.90  Aligned_cols=85  Identities=12%  Similarity=0.105  Sum_probs=52.9

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      -+|.|+|+|.+|...+...+..   +.++++++  ++++.+.+    +++|.+ .+++|.+++  ...+|+|+-++....
T Consensus       144 ~~VlV~GaG~vG~~a~qlak~~---Ga~Vi~~~--~~~~~~~~----~~lGa~-~v~~d~~~v--~~g~Dvv~d~~g~~~  211 (315)
T 3goh_A          144 REVLIVGFGAVNNLLTQMLNNA---GYVVDLVS--ASLSQALA----AKRGVR-HLYREPSQV--TQKYFAIFDAVNSQN  211 (315)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH---TCEEEEEC--SSCCHHHH----HHHTEE-EEESSGGGC--CSCEEEEECC-----
T ss_pred             CEEEEECCCHHHHHHHHHHHHc---CCEEEEEE--ChhhHHHH----HHcCCC-EEEcCHHHh--CCCccEEEECCCchh
Confidence            4799999999999877766665   67988876  55544444    456655 444443333  346899998887643


Q ss_pred             cHHHHHHHHcCCCCCeEEE
Q 017143           87 HYQILMDIINHPKPHHVLV  105 (376)
Q Consensus        87 h~~~~~~al~~~~g~~Vl~  105 (376)
                      - ..+.++++. .|+-|.+
T Consensus       212 ~-~~~~~~l~~-~G~~v~~  228 (315)
T 3goh_A          212 A-AALVPSLKA-NGHIICI  228 (315)
T ss_dssp             ---TTGGGEEE-EEEEEEE
T ss_pred             H-HHHHHHhcC-CCEEEEE
Confidence            3 456677764 3666776

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=92.08  E-value=1.5  Score=40.76  Aligned_cols=112  Identities=16%  Similarity=0.192  Sum_probs=70.8

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCC----------ChhhHHHHHHHHHhcCCCCCcc-CCHHHHhhCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADP----------HLQSRQQALKLANAFDWPLKVF-PGHQELLDSG   73 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~----------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~   73 (376)
                      +..+|+|.|.|.+|...+..+.+.   +.++++|+|.          +.+   .+.++.++.+- +..| -+-++++.. 
T Consensus       217 ~gk~vaVqG~GnVG~~~a~~L~~~---GakVVavsD~~G~i~dp~Gld~~---~l~~~~~~~g~-v~~~~~~~~e~~~~-  288 (419)
T 3aoe_E          217 RGARVVVQGLGQVGAAVALHAERL---GMRVVAVATSMGGMYAPEGLDVA---EVLSAYEATGS-LPRLDLAPEEVFGL-  288 (419)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT---TCEEEEEEETTEEEECTTCCCHH---HHHHHHHHHSS-CSCCCBCTTTGGGS-
T ss_pred             cCCEEEEECcCHHHHHHHHHHHHC---CCEEEEEEcCCCeEECCCCCCHH---HHHHHHHhhCC-cceeeccchhhhcc-
Confidence            347899999999999888777765   8999999998          665   45555555441 1211 122456654 


Q ss_pred             CCCEEEEeCCCC-ccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 017143           74 LCDVVVVSTPNM-THYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQV  133 (376)
Q Consensus        74 ~~D~V~i~t~~~-~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v  133 (376)
                      ++|+.+=|.... .+.+-+.+ |+    ..+++|--=.....++.++++..    |+.+..
T Consensus       289 ~~DVliP~A~~n~i~~~~A~~-l~----ak~V~EgAN~p~t~~A~~~L~~~----Gi~~~P  340 (419)
T 3aoe_E          289 EAEVLVLAAREGALDGDRARQ-VQ----AQAVVEVANFGLNPEAEAYLLGK----GALVVP  340 (419)
T ss_dssp             SCSEEEECSCTTCBCHHHHTT-CC----CSEEEECSTTCBCHHHHHHHHHH----TCEEEC
T ss_pred             CceEEEecccccccccchHhh-CC----ceEEEECCCCcCCHHHHHHHHHC----CCEEEC
Confidence            599999887654 44443332 33    45888873222226666665433    666653

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=92.07  E-value=0.33  Score=42.80  Aligned_cols=86  Identities=15%  Similarity=0.104  Sum_probs=51.0

Q ss_pred             CCceeEEEEeCChhhHH---HHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC----C-------HHHH
Q 017143            4 NDTVKYGIIGMGMMGRE---HFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP----G-------HQEL   69 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~---~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~----~-------~~~~   69 (376)
                      ..++||+|.+.|. |..   .+.+.... .-..++++|++..++    ++.+|+++|+|+..+.    +       +.+.
T Consensus        88 ~~~~ri~vl~Sg~-g~~l~~ll~~~~~g-~l~~~i~~Visn~~~----~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~  161 (286)
T 3n0v_A           88 NHRPKVVIMVSKA-DHCLNDLLYRQRIG-QLGMDVVAVVSNHPD----LEPLAHWHKIPYYHFALDPKDKPGQERKVLQV  161 (286)
T ss_dssp             TCCCEEEEEESSC-CHHHHHHHHHHHTT-SSCCEEEEEEESSST----THHHHHHTTCCEEECCCBTTBHHHHHHHHHHH
T ss_pred             CCCcEEEEEEeCC-CCCHHHHHHHHHCC-CCCcEEEEEEeCcHH----HHHHHHHcCCCEEEeCCCcCCHHHHHHHHHHH
Confidence            3478999999986 432   22222221 125799998876654    5567889999832211    1       2344


Q ss_pred             hhCCCCCEEEEeCCCCccHHHHHHHH
Q 017143           70 LDSGLCDVVVVSTPNMTHYQILMDII   95 (376)
Q Consensus        70 l~~~~~D~V~i~t~~~~h~~~~~~al   95 (376)
                      |+..++|+|+++.-..-=.+-+++..
T Consensus       162 l~~~~~Dlivla~y~~il~~~~l~~~  187 (286)
T 3n0v_A          162 IEETGAELVILARYMQVLSPELCRRL  187 (286)
T ss_dssp             HHHHTCSEEEESSCCSCCCHHHHHHT
T ss_pred             HHhcCCCEEEecccccccCHHHHhhh
Confidence            55557999998876543333333333

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=91.94  E-value=0.4  Score=47.14  Aligned_cols=35  Identities=26%  Similarity=0.282  Sum_probs=29.0

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL   43 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~   43 (376)
                      ..||.|||+|.+|...+..|...   |+.-+.|+|.|.
T Consensus        17 ~s~VlVVGaGGLGsevak~La~a---GVG~ItlvD~D~   51 (640)
T 1y8q_B           17 GGRVLVVGAGGIGCELLKNLVLT---GFSHIDLIDLDT   51 (640)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHH---TCCEEEEEECCB
T ss_pred             cCeEEEECcCHHHHHHHHHHHHc---CCCeEEEecCCE
Confidence            46999999999999999999886   666666888754

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=91.90  E-value=0.44  Score=42.62  Aligned_cols=74  Identities=22%  Similarity=0.292  Sum_probs=43.9

Q ss_pred             eeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCc--c--CCHHHHhhCCCCCEEEEe
Q 017143            7 VKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKV--F--PGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         7 ~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~l~~~~~D~V~i~   81 (376)
                      +||+||| +|.+|...+..+.... +-..-+.++|+++.....+.++.. ...+++.  +  ++..+.+++  .|+|+|+
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~-~~~~el~L~Di~~~~~G~a~Dl~~-~~~~~~v~~~~~~~~~~~~~~--aDivii~   76 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQL-PSGSELSLYDIAPVTPGVAVDLSH-IPTAVKIKGFSGEDATPALEG--ADVVLIS   76 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHS-CTTEEEEEECSSTTHHHHHHHHHT-SCSSEEEEEECSSCCHHHHTT--CSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCC-CCCceEEEEecCCCchhHHHHhhC-CCCCceEEEecCCCcHHHhCC--CCEEEEe
Confidence            5899999 8999998777775531 223445578988632234444442 2222122  2  233345554  8999998


Q ss_pred             CCC
Q 017143           82 TPN   84 (376)
Q Consensus        82 t~~   84 (376)
                      ...
T Consensus        77 ag~   79 (312)
T 3hhp_A           77 AGV   79 (312)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            753

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=91.84  E-value=0.62  Score=41.40  Aligned_cols=75  Identities=19%  Similarity=0.163  Sum_probs=54.8

Q ss_pred             ceeEEEEeCC--hhhHHHHHHhhhhcCCCcEEEEEeCCC----hhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEE
Q 017143            6 TVKYGIIGMG--MMGREHFINLHHLRSQGVSVVCIADPH----LQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVV   79 (376)
Q Consensus         6 ~~~v~iiG~G--~~g~~~~~~~~~~~~~~~~~~~v~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~   79 (376)
                      -+||++||=|  ++++..+..+..+   +++++-++-..    ++-.+.+++.+++.|..+..++|.++++++  .|+|+
T Consensus       148 gl~va~vGD~~~rva~Sl~~~~~~~---g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~--aDvvy  222 (307)
T 2i6u_A          148 GLRLSYFGDGANNMAHSLLLGGVTA---GIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAAAG--ADVLV  222 (307)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHHHT---TCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTT--CSEEE
T ss_pred             CeEEEEECCCCcCcHHHHHHHHHHC---CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhcC--CCEEE
Confidence            4899999975  6778888888887   78877655322    222244566677788655678999999987  89999


Q ss_pred             EeCCCC
Q 017143           80 VSTPNM   85 (376)
Q Consensus        80 i~t~~~   85 (376)
                      .-+.-+
T Consensus       223 ~~~w~s  228 (307)
T 2i6u_A          223 TDTWTS  228 (307)
T ss_dssp             ECCSSC
T ss_pred             ecceec
Confidence            877643

>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}

Probab=91.83  E-value=0.17  Score=45.71  Aligned_cols=99  Identities=24%  Similarity=0.311  Sum_probs=64.0

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHH---HhcC-----------------CCCCccC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLA---NAFD-----------------WPLKVFP   64 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~---~~~~-----------------~~~~~~~   64 (376)
                      +++||||.|.|.+|+..++.+.+.   ++++++|-|....  +...-+-   .-+|                 -+++++.
T Consensus        20 ~~~kVaInGfGrIGr~vlr~l~e~---~~~ivaIndl~d~--~~~a~llkydS~hG~f~~~v~~~~~~l~i~Gk~I~v~~   94 (356)
T 3hja_A           20 GSMKLAINGFGRIGRNVFKIAFER---GIDIVAINDLTDP--KTLAHLLKYDSTFGVYNKKVESRDGAIVVDGREIKIIA   94 (356)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHT---TCEEEEEECSSCH--HHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEEC
T ss_pred             CCeEEEEECCCHHHHHHHHHHHHC---CCCEEEEeCCCCH--HHhhhhhccccCCCCCCCCEEEcCCEEEECCEEEEEEE
Confidence            469999999999999998888764   7999999987421  1222221   1000                 0012222


Q ss_pred             --CHHHHhh-CCCCCEEEEeCCCCcc----HHHHHHHHc-CCCCCeEEEecCC
Q 017143           65 --GHQELLD-SGLCDVVVVSTPNMTH----YQILMDIIN-HPKPHHVLVEKPL  109 (376)
Q Consensus        65 --~~~~~l~-~~~~D~V~i~t~~~~h----~~~~~~al~-~~~g~~Vl~EKP~  109 (376)
                        +.+++-. +..+|+|+-||.-..-    .+.+...++ +| -|-|++.-|.
T Consensus        95 ~~dp~~i~w~~~gvDiV~esTG~f~s~~~~~e~a~~hl~~aG-AkkVVIsaps  146 (356)
T 3hja_A           95 ERDPKNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVNHAG-AKKVILTVPA  146 (356)
T ss_dssp             CSSGGGCCHHHHTCSEEEECSSSCCSSCCTTCCGGGGTTTSC-CSEEEESSCC
T ss_pred             cCChhhCCccccCCCEEEEecccccccchhHHHHHHHHHhCC-CeEEEECCCC
Confidence              2332211 1258999999988777    777888888 76 4778888885

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=91.75  E-value=0.88  Score=37.76  Aligned_cols=88  Identities=19%  Similarity=0.187  Sum_probs=53.3

Q ss_pred             eeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC---CccCCHHHHhhCCCCCEEEEeC
Q 017143            7 VKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL---KVFPGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         7 ~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~D~V~i~t   82 (376)
                      |||.|+| +|++|+..+..|.+.   +.+|+++ +|+++   +..++.  .++..   ...+.-.+.+..  +|+|+.+.
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~---g~~V~~~-~R~~~---~~~~~~--~~~~~~~~D~~d~~~~~~~~--~d~vi~~a   69 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNR---GHEVTAI-VRNAG---KITQTH--KDINILQKDIFDLTLSDLSD--QNVVVDAY   69 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT---TCEEEEE-ESCSH---HHHHHC--SSSEEEECCGGGCCHHHHTT--CSEEEECC
T ss_pred             CeEEEEcCCchhHHHHHHHHHhC---CCEEEEE-EcCch---hhhhcc--CCCeEEeccccChhhhhhcC--CCEEEECC
Confidence            4799999 599999998888875   6888865 57766   333332  22220   111111145544  89999887


Q ss_pred             CCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q 017143           83 PNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARK  125 (376)
Q Consensus        83 ~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~  125 (376)
                      .....                    ....+..-.+.+++++++
T Consensus        70 g~~~~--------------------~~~~~~~~~~~l~~a~~~   92 (221)
T 3ew7_A           70 GISPD--------------------EAEKHVTSLDHLISVLNG   92 (221)
T ss_dssp             CSSTT--------------------TTTSHHHHHHHHHHHHCS
T ss_pred             cCCcc--------------------ccchHHHHHHHHHHHHHh
Confidence            65211                    123356667777777743

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=91.67  E-value=0.68  Score=41.74  Aligned_cols=89  Identities=15%  Similarity=0.019  Sum_probs=53.7

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc---CCHHHHhhC--CCCCEEEEe
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF---PGHQELLDS--GLCDVVVVS   81 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~--~~~D~V~i~   81 (376)
                      .++.|+|+|..|...+..+.+.   +. ++ +.|+++++   .+ + ++.+++ -.+   ++.+.+-+.  .+.|+|+++
T Consensus       116 ~~viI~G~G~~g~~l~~~L~~~---g~-v~-vid~~~~~---~~-~-~~~~~~-~i~gd~~~~~~L~~a~i~~a~~vi~~  184 (336)
T 1lnq_A          116 RHVVICGWSESTLECLRELRGS---EV-FV-LAEDENVR---KK-V-LRSGAN-FVHGDPTRVSDLEKANVRGARAVIVD  184 (336)
T ss_dssp             CEEEEESCCHHHHHHHTTGGGS---CE-EE-EESCGGGH---HH-H-HHTTCE-EEESCTTSHHHHHHTCSTTEEEEEEC
T ss_pred             CCEEEECCcHHHHHHHHHHHhC---Cc-EE-EEeCChhh---hh-H-HhCCcE-EEEeCCCCHHHHHhcChhhccEEEEc
Confidence            4799999999999887777664   55 44 67999884   43 3 234554 222   233333322  458999999


Q ss_pred             CCCCccHHHHHHHHcC-CCCCeEEEe
Q 017143           82 TPNMTHYQILMDIINH-PKPHHVLVE  106 (376)
Q Consensus        82 t~~~~h~~~~~~al~~-~~g~~Vl~E  106 (376)
                      ++++..--.+...++. +...+|++.
T Consensus       185 ~~~d~~n~~~~~~ar~~~~~~~iiar  210 (336)
T 1lnq_A          185 LESDSETIHCILGIRKIDESVRIIAE  210 (336)
T ss_dssp             CSSHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred             CCccHHHHHHHHHHHHHCCCCeEEEE
Confidence            9976443344344332 112356664

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=91.66  E-value=0.71  Score=40.71  Aligned_cols=84  Identities=18%  Similarity=0.186  Sum_probs=49.8

Q ss_pred             ceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCCh------hhHHHHHHHHHhcCCCC--CccC---CHHHHhhCC
Q 017143            6 TVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHL------QSRQQALKLANAFDWPL--KVFP---GHQELLDSG   73 (376)
Q Consensus         6 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~------~~~~~~~~~~~~~~~~~--~~~~---~~~~~l~~~   73 (376)
                      +.+|.|+|+ |.+|...+..|.+.   +.++++ .+|+.      ++.+..+.+. ..++.+  --++   ++.++++. 
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~---g~~V~~-l~R~~~~~~~~~~~~~~~~l~-~~~v~~v~~D~~d~~~l~~~~~~-   77 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDL---GHPTFL-LVRESTASSNSEKAQLLESFK-ASGANIVHGSIDDHASLVEAVKN-   77 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHT---TCCEEE-ECCCCCTTTTHHHHHHHHHHH-TTTCEEECCCTTCHHHHHHHHHT-
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhC---CCCEEE-EECCcccccCHHHHHHHHHHH-hCCCEEEEeccCCHHHHHHHHcC-
Confidence            467999995 99999999888875   577775 45653      2211122222 224321  1122   35566664 


Q ss_pred             CCCEEEEeCCCC---ccHHHHHHHHc
Q 017143           74 LCDVVVVSTPNM---THYQILMDIIN   96 (376)
Q Consensus        74 ~~D~V~i~t~~~---~h~~~~~~al~   96 (376)
                       +|+|+.++...   ....++..|.+
T Consensus        78 -~d~vi~~a~~~~~~~~~~l~~aa~~  102 (308)
T 1qyc_A           78 -VDVVISTVGSLQIESQVNIIKAIKE  102 (308)
T ss_dssp             -CSEEEECCCGGGSGGGHHHHHHHHH
T ss_pred             -CCEEEECCcchhhhhHHHHHHHHHh
Confidence             89999888742   34455555555

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=91.66  E-value=1.1  Score=41.96  Aligned_cols=113  Identities=16%  Similarity=0.201  Sum_probs=70.4

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCC----------ChhhHHHHHHHHHhcCCCCCc-----cCCHHHH
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADP----------HLQSRQQALKLANAFDWPLKV-----FPGHQEL   69 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~----------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~   69 (376)
                      +..||+|.|.|.+|...+..|.+.   +.++++|+|.          +.+   .+.++.++.+- +..     +-+.+++
T Consensus       234 ~g~~vaVqGfGnVG~~~a~~L~e~---GakvVavsD~~G~i~dp~Gld~~---~l~~~~~~~g~-i~~y~~a~~i~~~ei  306 (440)
T 3aog_A          234 EGARVAIQGFGNVGNAAARAFHDH---GARVVAVQDHTGTVYNEAGIDPY---DLLRHVQEFGG-VRGYPKAEPLPAADF  306 (440)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT---TCEEEEEECSSCEEECTTCCCHH---HHHHHHHHTSS-STTCTTSEECCHHHH
T ss_pred             cCCEEEEeccCHHHHHHHHHHHHC---CCEEEEEEcCCcEEECCCCCCHH---HHHHHHHhcCC-cccCCCceEcCchhh
Confidence            357999999999999888777775   8999999998          444   45555555441 112     2245677


Q ss_pred             hhCCCCCEEEEeCCC-CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 017143           70 LDSGLCDVVVVSTPN-MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVG  134 (376)
Q Consensus        70 l~~~~~D~V~i~t~~-~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~  134 (376)
                      +.. ++|+++=|+.. ..+.+-+.+ |+    ..+++|--=.....++.++.+   ++ |+.+...
T Consensus       307 ~~~-~~DIlvPcA~~n~i~~~na~~-l~----ak~VvEgAN~p~t~eA~~iL~---~~-GI~~~PD  362 (440)
T 3aog_A          307 WGL-PVEFLVPAALEKQITEQNAWR-IR----ARIVAEGANGPTTPAADDILL---EK-GVLVVPD  362 (440)
T ss_dssp             TTC-CCSEEEECSSSSCBCTTTGGG-CC----CSEEECCSSSCBCHHHHHHHH---HH-TCEEECH
T ss_pred             hcC-CCcEEEecCCcCccchhhHHH-cC----CcEEEecCccccCHHHHHHHH---HC-CCEEECh
Confidence            764 59999988664 344333322 23    357777622222266776664   33 6665533

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=91.60  E-value=0.87  Score=41.48  Aligned_cols=136  Identities=7%  Similarity=0.016  Sum_probs=75.9

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC-------CHHHHhh------C
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP-------GHQELLD------S   72 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~------~   72 (376)
                      -+|.|+|+ |.+|...+...+..   +.+++++++.... .....++++++|.+ .+++       ++.+.+.      .
T Consensus       169 ~~VlV~Ga~G~vG~~aiqlak~~---Ga~vi~~~~~~~~-~~~~~~~~~~lGa~-~vi~~~~~~~~~~~~~i~~~t~~~~  243 (364)
T 1gu7_A          169 DWFIQNGGTSAVGKYASQIGKLL---NFNSISVIRDRPN-LDEVVASLKELGAT-QVITEDQNNSREFGPTIKEWIKQSG  243 (364)
T ss_dssp             CEEEESCTTSHHHHHHHHHHHHH---TCEEEEEECCCTT-HHHHHHHHHHHTCS-EEEEHHHHHCGGGHHHHHHHHHHHT
T ss_pred             cEEEECCCCcHHHHHHHHHHHHC---CCEEEEEecCccc-cHHHHHHHHhcCCe-EEEecCccchHHHHHHHHHHhhccC
Confidence            47999997 99999877766655   7788888743322 11122344567765 2222       2222221      2


Q ss_pred             CCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEec----CCCCCHHHHHHHHHHHHhCCCeEEEEeecccc--------C
Q 017143           73 GLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEK----PLCTTVADCKKVVDAARKRPDILVQVGLEYRY--------M  140 (376)
Q Consensus        73 ~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EK----P~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~--------~  140 (376)
                      ..+|+|+-++....-. .+.++++. .|+-|++--    +...+..      ... .+ ++.+.-.+...+        .
T Consensus       244 ~g~Dvvid~~G~~~~~-~~~~~l~~-~G~~v~~g~~~~~~~~~~~~------~~~-~~-~~~~~g~~~~~~~~~~~~~~~  313 (364)
T 1gu7_A          244 GEAKLALNCVGGKSST-GIARKLNN-NGLMLTYGGMSFQPVTIPTS------LYI-FK-NFTSAGFWVTELLKNNKELKT  313 (364)
T ss_dssp             CCEEEEEESSCHHHHH-HHHHTSCT-TCEEEECCCCSSCCEEECHH------HHH-HS-CCEEEECCHHHHHTTCHHHHH
T ss_pred             CCceEEEECCCchhHH-HHHHHhcc-CCEEEEecCCCCCCcccCHH------HHh-hc-CcEEEEEchhHhcccCHHHHH
Confidence            3589999999754433 55677774 366666533    2223332      223 23 444433222211        2


Q ss_pred             HHHHHHHHHHHcCCCCc
Q 017143          141 PPVAKLIQIVKSGSIGQ  157 (376)
Q Consensus       141 p~~~~~k~~i~~g~iG~  157 (376)
                      ..+..+.+++++|.|--
T Consensus       314 ~~~~~~~~l~~~g~l~~  330 (364)
T 1gu7_A          314 STLNQIIAWYEEGKLTD  330 (364)
T ss_dssp             HHHHHHHHHHHHTCCCC
T ss_pred             HHHHHHHHHHHcCCccc
Confidence            35677888888887743

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=91.51  E-value=0.044  Score=51.24  Aligned_cols=78  Identities=13%  Similarity=0.084  Sum_probs=52.1

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHh--hCCCCCEEEEeCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELL--DSGLCDVVVVSTP   83 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~D~V~i~t~   83 (376)
                      ..++.|+|+|..|+..+..+.+   .++++++++|.++.+..  .   .-.|+|  ++. .+++.  ...+++.|+|+. 
T Consensus        52 ~~~v~IiGAG~~G~~l~~~l~~---~g~~ivgfiDdd~~~~g--~---~i~Gip--V~~-~~~l~~~~~~~~~~viiai-  119 (409)
T 2py6_A           52 ATRLVILGTKGFGAHLMNVRHE---RPCEVIAAVDDFRYHSG--E---LYYGLP--IIS-TDRFTELATHDRDLVALNT-  119 (409)
T ss_dssp             GCEEEEECSSSTHHHHHSCSSS---CSSEEEEEECTTTTTSC--C---EETTEE--EEC-HHHHHHHHHTCTTEEEEEC-
T ss_pred             CCeEEEEeCCHHHHHHHHHHHH---CCCEEEEEEeCCccccc--C---EECCEE--EEC-HHHHHHHHhCCCCEEEEec-
Confidence            4579999999999988776654   47999999998765211  1   123665  554 34443  345578888888 


Q ss_pred             CCccHHHHHHHHc
Q 017143           84 NMTHYQILMDIIN   96 (376)
Q Consensus        84 ~~~h~~~~~~al~   96 (376)
                       ....+++..+.+
T Consensus       120 -~~r~~i~~~l~~  131 (409)
T 2py6_A          120 -CRYDGPKRFFDQ  131 (409)
T ss_dssp             -CCSHHHHHHHHH
T ss_pred             -cHHHHHHHHHHh
Confidence             455666666654

>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}

Probab=91.44  E-value=0.76  Score=40.82  Aligned_cols=76  Identities=21%  Similarity=0.095  Sum_probs=54.0

Q ss_pred             ceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeC----CChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEE
Q 017143            6 TVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIAD----PHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         6 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      .+||++||= +++++..+..+..+   +++++.++-    ++++-.+.+++.+++.|..+..++|.+++++.  .|+|+.
T Consensus       146 gl~va~vGD~~~va~Sl~~~~~~~---G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~--aDvvyt  220 (307)
T 3tpf_A          146 IAKVAFIGDSNNMCNSWLITAAIL---GFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGYDKFEALKD--KDVVIT  220 (307)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHH---TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTT--CSEEEE
T ss_pred             CCEEEEEcCCCccHHHHHHHHHHc---CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhcC--CCEEEe
Confidence            589999995 55677788888887   788776552    22232345566666777655678999999987  899998


Q ss_pred             eCCCCc
Q 017143           81 STPNMT   86 (376)
Q Consensus        81 ~t~~~~   86 (376)
                      -+..+.
T Consensus       221 ~~w~sm  226 (307)
T 3tpf_A          221 DTWVSM  226 (307)
T ss_dssp             CCSSCT
T ss_pred             cCcccC
Confidence            775443

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=91.42  E-value=0.59  Score=41.86  Aligned_cols=75  Identities=16%  Similarity=0.159  Sum_probs=54.1

Q ss_pred             ceeEEEEeCC--hhhHHHHHHhhhhcCCCcEEEEEeCC----ChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEE
Q 017143            6 TVKYGIIGMG--MMGREHFINLHHLRSQGVSVVCIADP----HLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVV   79 (376)
Q Consensus         6 ~~~v~iiG~G--~~g~~~~~~~~~~~~~~~~~~~v~d~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~   79 (376)
                      -+||++||=|  ++++..+..+..+   +++++-++-.    +++-.+.+++.+++.|..+..++|.++++++  .|+|+
T Consensus       167 gl~va~vGD~~~rva~Sl~~~~~~~---G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~--aDvvy  241 (325)
T 1vlv_A          167 GVKVVFMGDTRNNVATSLMIACAKM---GMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAG--ADVVY  241 (325)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHHHT---TCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTT--CSEEE
T ss_pred             CcEEEEECCCCcCcHHHHHHHHHHC---CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHHcc--CCEEE
Confidence            4899999985  6778888888887   7887755422    2222244566777778555578999999987  89998


Q ss_pred             EeCCCC
Q 017143           80 VSTPNM   85 (376)
Q Consensus        80 i~t~~~   85 (376)
                      .-+.-+
T Consensus       242 t~~w~s  247 (325)
T 1vlv_A          242 TDVWAS  247 (325)
T ss_dssp             ECCCC-
T ss_pred             eccccc
Confidence            877644

>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*

Probab=91.41  E-value=0.67  Score=41.64  Aligned_cols=126  Identities=9%  Similarity=-0.006  Sum_probs=76.6

Q ss_pred             ceeEEEEeCC--hhhHHHHHHhhhhcCCCcEEEEEeCC----ChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEE
Q 017143            6 TVKYGIIGMG--MMGREHFINLHHLRSQGVSVVCIADP----HLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVV   79 (376)
Q Consensus         6 ~~~v~iiG~G--~~g~~~~~~~~~~~~~~~~~~~v~d~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~   79 (376)
                      -++|++||=|  ++++..+..+..+   +++++.++-.    +++-.+.+++.+++.|..+..++|.+++++.  .|+|+
T Consensus       155 gl~ia~vGD~~~~va~Sl~~~~~~~---G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~--aDvvy  229 (333)
T 1duv_G          155 EMTLVYAGDARNNMGNSMLEAAALT---GLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEG--ADFIY  229 (333)
T ss_dssp             GCEEEEESCTTSHHHHHHHHHHHHH---CCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTT--CSEEE
T ss_pred             CcEEEEECCCccchHHHHHHHHHHc---CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEECHHHHhCC--CCEEE
Confidence            4899999975  7888888888887   7887755522    2222245667777888555578999999987  89999


Q ss_pred             EeCCCCccHH---HHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHH
Q 017143           80 VSTPNMTHYQ---ILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIV  150 (376)
Q Consensus        80 i~t~~~~h~~---~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i  150 (376)
                      .-+.-+.-.+   ...+ .+      .  =+|...|.+    +.+.+ .+.+..+|-......+.....-+..+
T Consensus       230 td~w~smg~~~~~~~er-~~------~--~~~y~v~~~----ll~~a-~~~~ai~mHcLP~~h~~~t~~~~~~~  289 (333)
T 1duv_G          230 TDVWVSMGEAKEKWAER-IA------L--LREYQVNSK----MMQLT-GNPEVKFLHCLPAFHDDQTTLGKKMA  289 (333)
T ss_dssp             ECCSSCTTSCTTHHHHH-HH------H--HGGGCBCHH----HHHTT-CCTTCEEEECSCCCCSSCSHHHHHHH
T ss_pred             eCCccccCccccchHHH-HH------H--hhccccCHH----HHHhc-cCCCcEEECCCCCCCccccccchhhh
Confidence            8776432110   0000 00      0  034555554    34444 24567777766655444444444333

>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}

Probab=91.25  E-value=0.76  Score=41.67  Aligned_cols=128  Identities=13%  Similarity=0.074  Sum_probs=77.5

Q ss_pred             ceeEEEEeCC--hhhHHHHHHhhhhcCCCcEEEEEeCC----ChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEE
Q 017143            6 TVKYGIIGMG--MMGREHFINLHHLRSQGVSVVCIADP----HLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVV   79 (376)
Q Consensus         6 ~~~v~iiG~G--~~g~~~~~~~~~~~~~~~~~~~v~d~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~   79 (376)
                      -++|++||=|  ++++..+..+..+   +++++.++-.    +++-.+.+++.+++.|..+..++|.+++++.  .|+|+
T Consensus       176 gl~va~vGD~~~rva~Sl~~~~~~l---G~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~--aDvvy  250 (359)
T 2w37_A          176 GLTLTFMGDGRNNVANSLLVTGAIL---GVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVITDDLDEGLKG--SNVVY  250 (359)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHHHH---TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTT--CSEEE
T ss_pred             CeEEEEECCCccchHHHHHHHHHHc---CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhcC--CCEEE
Confidence            4899999975  7788888888887   7887755422    2222245666777788655678999999987  89988


Q ss_pred             EeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhC--CCeEEEEeeccccCHHHHHHHHHHH
Q 017143           80 VSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKR--PDILVQVGLEYRYMPPVAKLIQIVK  151 (376)
Q Consensus        80 i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~--~~~~~~v~~~~r~~p~~~~~k~~i~  151 (376)
                      .-+.-+.-.+-..+-.+      .+  +|...|.+    +.+.+ ++  .+.++|-......+.....-+++-+
T Consensus       251 td~w~smg~ee~~er~~------~~--~~y~v~~e----ll~~a-k~~~~dai~MHcLP~~h~~~t~~g~~~~~  311 (359)
T 2w37_A          251 TDVWVSMGESNWEERVK------EL--TPYQVNME----AMKKT-GTPDDQLIFMHCLPAFHNTDTQYGKEIKE  311 (359)
T ss_dssp             ECCSCCTTCTTHHHHHH------HH--GGGCBCHH----HHHTT-CCCGGGCEEEECSCCCCSSCSHHHHHHHH
T ss_pred             EcccccccccchHHHHH------Hh--hccccCHH----HHHhh-CCCCCCEEEECCCCCCcccccccchhhhh
Confidence            87764321110000001      00  35555554    44555 31  3667777666655555555554443

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=91.24  E-value=0.18  Score=44.88  Aligned_cols=130  Identities=13%  Similarity=0.106  Sum_probs=71.6

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC--CHHHHhhC-CCCCEEEEeC
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP--GHQELLDS-GLCDVVVVST   82 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~-~~~D~V~i~t   82 (376)
                      -+|.|+|+ |.+|...+..++..   +.+++++ ++++++++.    ++++|.. ..++  +.+++.+. ..+|+|+- +
T Consensus       127 ~~vlV~Ga~G~vG~~~~~~a~~~---Ga~Vi~~-~~~~~~~~~----~~~~ga~-~~~~~~~~~~~~~~~~~~d~vid-~  196 (302)
T 1iz0_A          127 EKVLVQAAAGALGTAAVQVARAM---GLRVLAA-ASRPEKLAL----PLALGAE-EAATYAEVPERAKAWGGLDLVLE-V  196 (302)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHT---TCEEEEE-ESSGGGSHH----HHHTTCS-EEEEGGGHHHHHHHTTSEEEEEE-C
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC---CCEEEEE-eCCHHHHHH----HHhcCCC-EEEECCcchhHHHHhcCceEEEE-C
Confidence            47999998 99999877766664   6787765 566664433    3456654 2222  20222221 35899999 7


Q ss_pred             CCCccHHHHHHHHcCCCCCeEEEecCC----CCCHHHHHHHHHHHHhCCCeEEEEeecc----ccCHHHHHHHH---HHH
Q 017143           83 PNMTHYQILMDIINHPKPHHVLVEKPL----CTTVADCKKVVDAARKRPDILVQVGLEY----RYMPPVAKLIQ---IVK  151 (376)
Q Consensus        83 ~~~~h~~~~~~al~~~~g~~Vl~EKP~----a~~~~e~~~l~~~a~~~~~~~~~v~~~~----r~~p~~~~~k~---~i~  151 (376)
                      .. .....+.++++. .|+-|.+-.+.    ..+.      .... .+ ++.+. +...    .....+..+.+   +++
T Consensus       197 g~-~~~~~~~~~l~~-~G~~v~~g~~~~~~~~~~~------~~~~-~~-~~~~~-g~~~~~~~~~~~~~~~~~~~~~l~~  265 (302)
T 1iz0_A          197 RG-KEVEESLGLLAH-GGRLVYIGAAEGEVAPIPP------LRLM-RR-NLAVL-GFWLTPLLREGALVEEALGFLLPRL  265 (302)
T ss_dssp             SC-TTHHHHHTTEEE-EEEEEEC-------CCCCT------THHH-HT-TCEEE-ECCHHHHTTCHHHHHHHHHHHGGGB
T ss_pred             CH-HHHHHHHHhhcc-CCEEEEEeCCCCCCCCcCH------HHHH-hC-CCeEE-EEeccchhhhHHHHHHHHhhhHHHH
Confidence            76 566777777773 25555443221    1121      1223 23 44433 3322    12345666777   787


Q ss_pred             cCCCCc
Q 017143          152 SGSIGQ  157 (376)
Q Consensus       152 ~g~iG~  157 (376)
                      +|++-.
T Consensus       266 ~g~l~~  271 (302)
T 1iz0_A          266 GRELRP  271 (302)
T ss_dssp             TTTBCC
T ss_pred             cCCccc
Confidence            887743

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=91.21  E-value=0.31  Score=43.69  Aligned_cols=73  Identities=15%  Similarity=0.259  Sum_probs=43.5

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCC--ChhhHH-HHHHHHH---hcCCCCCcc--C-CHHHHhhCCCCC
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADP--HLQSRQ-QALKLAN---AFDWPLKVF--P-GHQELLDSGLCD   76 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~--~~~~~~-~~~~~~~---~~~~~~~~~--~-~~~~~l~~~~~D   76 (376)
                      +||+|+|+ |++|...+..+...  +.+.-+.++|+  ++++.+ .+..+..   ..+.++...  + ++.+.+++  .|
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~--~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~g--aD   76 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKE--PFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDE--SD   76 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTC--TTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTT--CS
T ss_pred             CEEEEECCCChhHHHHHHHHHhC--CCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCC--CC
Confidence            48999999 99999888877664  33333557888  654322 1222321   122222222  2 24666765  89


Q ss_pred             EEEEeCC
Q 017143           77 VVVVSTP   83 (376)
Q Consensus        77 ~V~i~t~   83 (376)
                      +|+++.-
T Consensus        77 ~Vi~~Ag   83 (313)
T 1hye_A           77 VVIITSG   83 (313)
T ss_dssp             EEEECCS
T ss_pred             EEEECCC
Confidence            9998874

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=91.18  E-value=1.1  Score=40.56  Aligned_cols=140  Identities=18%  Similarity=0.148  Sum_probs=75.4

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhcCCCc-EEEEEeCCChhhHHHHHHHHHhcCCCCCc--c--CCHHHHhhC---CCCCE
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLRSQGV-SVVCIADPHLQSRQQALKLANAFDWPLKV--F--PGHQELLDS---GLCDV   77 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~-~~~~v~d~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~l~~---~~~D~   77 (376)
                      -+|.|+|+ |.+|...+..++..   +. ++++ +++++++   .+.+.+++|.. ..  +  .++.+.+.+   ..+|+
T Consensus       162 ~~vlI~GasggiG~~~~~~a~~~---Ga~~Vi~-~~~~~~~---~~~~~~~~g~~-~~~d~~~~~~~~~~~~~~~~~~d~  233 (357)
T 2zb4_A          162 KTMVVSGAAGACGSVAGQIGHFL---GCSRVVG-ICGTHEK---CILLTSELGFD-AAINYKKDNVAEQLRESCPAGVDV  233 (357)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHT---TCSEEEE-EESCHHH---HHHHHHTSCCS-EEEETTTSCHHHHHHHHCTTCEEE
T ss_pred             cEEEEECCCcHHHHHHHHHHHHC---CCCeEEE-EeCCHHH---HHHHHHHcCCc-eEEecCchHHHHHHHHhcCCCCCE
Confidence            57999998 99999887777664   77 7775 4566653   33333446654 11  1  233333321   15899


Q ss_pred             EEEeCCCCccHHHHHHHHcCCCCCeEEEecCC----CCCHH--HHH-HHHHHHHhCCCeEEEEeecccc----CHHHHHH
Q 017143           78 VVVSTPNMTHYQILMDIINHPKPHHVLVEKPL----CTTVA--DCK-KVVDAARKRPDILVQVGLEYRY----MPPVAKL  146 (376)
Q Consensus        78 V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~----a~~~~--e~~-~l~~~a~~~~~~~~~v~~~~r~----~p~~~~~  146 (376)
                      |+-++.. .....+.++++. .|+-|++--+-    ..+..  ... -+.... .+ ++.+.-.+...|    ...+..+
T Consensus       234 vi~~~G~-~~~~~~~~~l~~-~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~i~g~~~~~~~~~~~~~~~~~  309 (357)
T 2zb4_A          234 YFDNVGG-NISDTVISQMNE-NSHIILCGQISQYNKDVPYPPPLSPAIEAIQK-ER-NITRERFLVLNYKDKFEPGILQL  309 (357)
T ss_dssp             EEESCCH-HHHHHHHHTEEE-EEEEEECCCGGGTTSCCCSSCCCCHHHHHHHH-HH-TCEEEECCGGGGGGGHHHHHHHH
T ss_pred             EEECCCH-HHHHHHHHHhcc-CcEEEEECCccccccCccccccchhhhhhhhh-cc-eeEEEEeehhhhhHHHHHHHHHH
Confidence            9999874 445566667763 26555553221    11100  000 011222 22 333332222222    3456778


Q ss_pred             HHHHHcCCCCce
Q 017143          147 IQIVKSGSIGQV  158 (376)
Q Consensus       147 k~~i~~g~iG~i  158 (376)
                      .+++++|+|--.
T Consensus       310 ~~l~~~g~l~~~  321 (357)
T 2zb4_A          310 SQWFKEGKLKIK  321 (357)
T ss_dssp             HHHHHTTCCCCC
T ss_pred             HHHHHcCCCcCc
Confidence            888888887543

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=91.10  E-value=0.16  Score=44.91  Aligned_cols=70  Identities=24%  Similarity=0.256  Sum_probs=45.8

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCC--------CCCccCCHHHHhhCCCCCEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDW--------PLKVFPGHQELLDSGLCDVV   78 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~D~V   78 (376)
                      .++.|+|+|.+|+..+..|.+.   + +|+ +++++.++   +++++++++.        .+.. .++.+.+.  ++|+|
T Consensus       129 k~vlV~GaGgiG~aia~~L~~~---G-~V~-v~~r~~~~---~~~l~~~~~~~~~~~~~~~~d~-~~~~~~~~--~~Dil  197 (287)
T 1nvt_A          129 KNIVIYGAGGAARAVAFELAKD---N-NII-IANRTVEK---AEALAKEIAEKLNKKFGEEVKF-SGLDVDLD--GVDII  197 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSS---S-EEE-EECSSHHH---HHHHHHHHHHHHTCCHHHHEEE-ECTTCCCT--TCCEE
T ss_pred             CEEEEECchHHHHHHHHHHHHC---C-CEE-EEECCHHH---HHHHHHHHhhhcccccceeEEE-eeHHHhhC--CCCEE
Confidence            5799999999999988888876   5 655 78998874   4444443211        0011 12223333  48999


Q ss_pred             EEeCCCCcc
Q 017143           79 VVSTPNMTH   87 (376)
Q Consensus        79 ~i~t~~~~h   87 (376)
                      +.+++...+
T Consensus       198 Vn~ag~~~~  206 (287)
T 1nvt_A          198 INATPIGMY  206 (287)
T ss_dssp             EECSCTTCT
T ss_pred             EECCCCCCC
Confidence            999997654

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=91.09  E-value=0.83  Score=40.59  Aligned_cols=90  Identities=17%  Similarity=0.158  Sum_probs=53.9

Q ss_pred             ceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCCh------hhHHHHHHHHHhcCCCC--CccC---CHHHHhhCC
Q 017143            6 TVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHL------QSRQQALKLANAFDWPL--KVFP---GHQELLDSG   73 (376)
Q Consensus         6 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~------~~~~~~~~~~~~~~~~~--~~~~---~~~~~l~~~   73 (376)
                      +++|.|+|. |.+|...+..|.+.   +.+|+++ +|++      ++.+..+.+. ..++.+  --++   +++++++. 
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~---g~~V~~~-~R~~~~~~~~~~~~~l~~~~-~~~v~~v~~D~~d~~~l~~a~~~-   77 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSF---SHPTFIY-ARPLTPDSTPSSVQLREEFR-SMGVTIIEGEMEEHEKMVSVLKQ-   77 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHT---TCCEEEE-ECCCCTTCCHHHHHHHHHHH-HTTCEEEECCTTCHHHHHHHHTT-
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhC---CCcEEEE-ECCcccccChHHHHHHHHhh-cCCcEEEEecCCCHHHHHHHHcC-
Confidence            468999995 99999999888875   6787765 4554      2222222222 223321  1122   35566654 


Q ss_pred             CCCEEEEeCCC---CccHHHHHHHHcCCCC--CeEE
Q 017143           74 LCDVVVVSTPN---MTHYQILMDIINHPKP--HHVL  104 (376)
Q Consensus        74 ~~D~V~i~t~~---~~h~~~~~~al~~~~g--~~Vl  104 (376)
                       +|+|+.+...   .....++..|.+  +|  ++++
T Consensus        78 -~d~vi~~a~~~~~~~~~~l~~aa~~--~g~v~~~v  110 (321)
T 3c1o_A           78 -VDIVISALPFPMISSQIHIINAIKA--AGNIKRFL  110 (321)
T ss_dssp             -CSEEEECCCGGGSGGGHHHHHHHHH--HCCCCEEE
T ss_pred             -CCEEEECCCccchhhHHHHHHHHHH--hCCccEEe
Confidence             8999988764   345556666666  44  4554

>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A

Probab=91.04  E-value=0.54  Score=42.54  Aligned_cols=78  Identities=9%  Similarity=0.094  Sum_probs=61.8

Q ss_pred             HHHHHHHHhcCCC--CCccCCH-HHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHH
Q 017143           47 QQALKLANAFDWP--LKVFPGH-QELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAA  123 (376)
Q Consensus        47 ~~~~~~~~~~~~~--~~~~~~~-~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a  123 (376)
                      ....+.++++|++  ...|+.- -+++++.++|+.=|++.+-.++++.+++.+  .||+|++-.-++ |.+|...-++..
T Consensus        94 ~~L~~~~~~~Gi~~~st~~d~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~--~gkPviLstGma-t~~Ei~~Ave~i  170 (349)
T 2wqp_A           94 IKLKEYVESKGMIFISTLFSRAAALRLQRMDIPAYKIGSGECNNYPLIKLVAS--FGKPIILSTGMN-SIESIKKSVEII  170 (349)
T ss_dssp             HHHHHHHHHTTCEEEEEECSHHHHHHHHHHTCSCEEECGGGTTCHHHHHHHHT--TCSCEEEECTTC-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCeEEEeeCCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHh--cCCeEEEECCCC-CHHHHHHHHHHH
Confidence            4566778889987  1334321 245555568999999999999999999999  899999999997 999999999888


Q ss_pred             HhCC
Q 017143          124 RKRP  127 (376)
Q Consensus       124 ~~~~  127 (376)
                      ...+
T Consensus       171 ~~~G  174 (349)
T 2wqp_A          171 REAG  174 (349)
T ss_dssp             HHHT
T ss_pred             HHcC
Confidence            6543

>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*

Probab=91.03  E-value=1.9  Score=36.22  Aligned_cols=81  Identities=12%  Similarity=0.130  Sum_probs=43.6

Q ss_pred             CceeEEEEeCChhhHHHHHHh-hhhc--CCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEe
Q 017143            5 DTVKYGIIGMGMMGREHFINL-HHLR--SQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~-~~~~--~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~   81 (376)
                      +.+|||||=+|++|...+-.| ...+  .+++++.-+.+-..-.-+.++.....          .-++.++-++|.|++.
T Consensus         2 mvvKiGiiKlGNigts~~idl~LDErAdRedI~vrv~gsGaKm~pe~~~~~~~~----------~~~~~~~~~pDfvI~i   71 (283)
T 1qv9_A            2 TVAKAIFIKCGNLGTSMMMDMLLDERADREDVEFRVVGTSVKMDPECVEAAVEM----------ALDIAEDFEPDFIVYG   71 (283)
T ss_dssp             CCEEEEEEECSCCHHHHHTTGGGSTTSCCSSEEEEEEECTTCCSHHHHHHHHHH----------HHHHHHHHCCSEEEEE
T ss_pred             eeEEEEEEEecccchHHHHHHHHHhhhccCCceEEEeccCCCCCHHHHHHHHHH----------hhhhhhhcCCCEEEEE
Confidence            479999999999998655443 2222  25777665544322211122221110          0011133359999999


Q ss_pred             CCCCcc--HHHHHHHH
Q 017143           82 TPNMTH--YQILMDII   95 (376)
Q Consensus        82 t~~~~h--~~~~~~al   95 (376)
                      +||..-  ..-+++.|
T Consensus        72 sPN~a~PGP~~ARE~l   87 (283)
T 1qv9_A           72 GPNPAAPGPSKAREML   87 (283)
T ss_dssp             CSCTTSHHHHHHHHHH
T ss_pred             CCCCCCCCchHHHHHH
Confidence            998543  23344444

>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*

Probab=91.02  E-value=0.61  Score=38.99  Aligned_cols=86  Identities=12%  Similarity=0.100  Sum_probs=49.8

Q ss_pred             eEEEE--eCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCc-----cCC-------HHHHhhCC
Q 017143            8 KYGII--GMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKV-----FPG-------HQELLDSG   73 (376)
Q Consensus         8 ~v~ii--G~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~-----~~~-------~~~~l~~~   73 (376)
                      ||+|+  |.|..-+..+..++.. ..+.++++|+...++.  ...+.|+++|+|+..     +.+       +.+.|+..
T Consensus         2 riaVl~SG~Gs~L~aLi~~~~~~-~~~~~I~~Vvs~~~~~--~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~   78 (209)
T 1meo_A            2 RVAVLISGTGSNLQALIDSTREP-NSSAQIDIVISNKAAV--AGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEF   78 (209)
T ss_dssp             EEEEEESSSCTTHHHHHHHHHST-TCSCEEEEEEESSTTC--HHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHT
T ss_pred             eEEEEEECCchHHHHHHHHHhcC-CCCcEEEEEEeCCCCh--HHHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHhc
Confidence            66666  4554444444444432 1368999888654443  456788999998321     222       23445556


Q ss_pred             CCCEEEEeCCCCccHHHHHHHHc
Q 017143           74 LCDVVVVSTPNMTHYQILMDIIN   96 (376)
Q Consensus        74 ~~D~V~i~t~~~~h~~~~~~al~   96 (376)
                      ++|+++++.....=.+-++.+.+
T Consensus        79 ~~Dliv~a~y~~il~~~~l~~~~  101 (209)
T 1meo_A           79 SIDIVCLAGFMRILSGPFVQKWN  101 (209)
T ss_dssp             TCCEEEEESCCSCCCHHHHHHTT
T ss_pred             CCCEEEEcchhhhCCHHHHhhhc
Confidence            79999998865433333444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	376
d2nvwa1	237	c.2.1.3 (A:2-154,A:374-457) Galactose/lactose meta	2e-22
d1lc0a1	172	c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {	2e-17
d1xeaa1	167	c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductas	2e-16
d1h6da1	221	c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxid	9e-16
d1zh8a1	181	c.2.1.3 (A:4-131,A:276-328) Hypothetical protein T	2e-15
d1tlta1	164	c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM	6e-15
d1xeaa2	144	d.81.1.5 (A:123-266) Putative oxidoreductase VCA10	5e-13
d1ydwa1	184	c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductas	2e-12
d1f06a1	170	c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid de	1e-09
d2nvwa2	219	d.81.1.5 (A:155-373) Galactose/lactose metabolism	3e-08
d1h6da2	162	d.81.1.5 (A:213-374) Glucose-fructose oxidoreducta	2e-07
d1zh8a2	144	d.81.1.5 (A:132-275) Hypothetical protein TM0312 {	2e-06
d1nvmb1	157	c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydroge	0.003

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} Length = 237

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

 Score = 92.4 bits (228), Expect = 2e-22
 Identities = 38/213 (17%), Positives = 85/213 (39%), Gaps = 17/213 (7%)

Query: 1   MAANDTVKYGIIGMG----MMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF 56
           + ++  ++ G +G+      + + HF+ +  L S    +V + +P L+S  Q ++     
Sbjct: 11  VPSSRPIRVGFVGLTSGKSWVAKTHFLAIQQL-SSQFQIVALYNPTLKSSLQTIE--QLQ 67

Query: 57  DWPLKVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINH----PKPHHVLVEKPLCTT 112
                 F   +        D++VVS     HY+++ +I+ H        ++ VE  L  +
Sbjct: 68  LKHATGFDSLESFAQYKDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAAS 127

Query: 113 VADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKS----GSIGQVKMVAIREHRF 168
           V   +++   +++R ++   + L+ RY   V  +++I +S      +G+ +  + R    
Sbjct: 128 VQQAEELYSISQQRANLQTIICLQGRYNSVVGNILRIYESIADYHFLGKPESKSSRGPDD 187

Query: 169 PFLVKVNDWNRFNENTGGTLV--EKCCHFFDLM 199
            F     D   F      T           D +
Sbjct: 188 LFASTKFDKQGFRFEGFPTFKDAIILHRLIDAV 220

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 172

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 76.8 bits (188), Expect = 2e-17
 Identities = 22/183 (12%), Positives = 54/183 (29%), Gaps = 19/183 (10%)

Query: 1   MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL 60
           +  +      ++G+G  G     +L   R    + + +     +    +L          
Sbjct: 2   ITNSGKFGVVVVGVGRAGSVRLRDLKDPR--SAAFLNLIGFVSRRELGSLDEVRQISL-- 57

Query: 61  KVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVV 120
                 ++ L S   DV  + + + +H   +   +   K     VE P+  + A  +++ 
Sbjct: 58  ------EDALRSQEIDVAYICSESSSHEDYIRQFLQAGKHVL--VEYPMTLSFAAAQELW 109

Query: 121 DAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIR------EHRFPFLVKV 174
           + A ++   ++             K   I     + QV    +        H       +
Sbjct: 110 ELAAQK-GRVLHEEHVELLKNIFLKDQDIFVQKLLDQVSAEDLAAEKKRIMHCLGLASDI 168

Query: 175 NDW 177
              
Sbjct: 169 QKL 171

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

 Score = 73.7 bits (180), Expect = 2e-16
 Identities = 25/156 (16%), Positives = 54/156 (34%), Gaps = 11/156 (7%)

Query: 6   TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPG 65
           ++K  +IG+G + ++ ++ +         V+C  +P         K+        +V   
Sbjct: 1   SLKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNP---------KVLGTLATRYRVSAT 51

Query: 66  HQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARK 125
             +  D     V  V     T     +            V+KPL  +  +C+ + + A K
Sbjct: 52  CTDYRDVLQYGVDAVMIHAATDVHSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEK 111

Query: 126 RPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMV 161
                + VG    +   V   +Q+  +G +    + 
Sbjct: 112 H-HQPLYVGFN-GFDAMVQDWLQVAAAGKLPTHIIE 145

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} Length = 221

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

 Score = 73.6 bits (179), Expect = 9e-16
 Identities = 27/158 (17%), Positives = 58/158 (36%), Gaps = 4/158 (2%)

Query: 1   MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL 60
           M  +    Y I+G+G       +       Q   +  +   + +  +            +
Sbjct: 28  MPEDRRFGYAIVGLGKYALNQILPGFA-GCQHSRIEALVSGNAEKAKIVAAEYGVDPRKI 86

Query: 61  KVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVV 120
             +    ++      D V +  PN  H +  +      K      EKP+ T+VADC++++
Sbjct: 87  YDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIRAFKAGKHVM--CEKPMATSVADCQRMI 144

Query: 121 DAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQV 158
           DAA+   +  + +G    Y    A+L  + ++    + 
Sbjct: 145 DAAKA-ANKKLMIGYRCHYNQFSAQLDHLAEAVINNKP 181

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} Length = 181

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

 Score = 71.5 bits (174), Expect = 2e-15
 Identities = 30/168 (17%), Positives = 51/168 (30%), Gaps = 10/168 (5%)

Query: 6   TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPG 65
            ++ GI+G G+  RE  +      S    +  +        ++  K+             
Sbjct: 3   KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEEL 62

Query: 66  HQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARK 125
            +         V  V         +        K  HV+ EKP+ T V   KKVV+ + K
Sbjct: 63  LES------GLVDAVDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEK 116

Query: 126 RPDILVQVGLEYR---YMPPVAKLIQIVKSGSIGQVKMVAIREHRFPF 170
             +  V +   +R   Y        Q+V  G    +           F
Sbjct: 117 S-EKTVYIAENFRENSYQKEFEDFYQVVAEGKPNDLGSPVQALKDLAF 163

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} Length = 164

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

 Score = 70.0 bits (170), Expect = 6e-15
 Identities = 26/156 (16%), Positives = 61/156 (39%), Gaps = 12/156 (7%)

Query: 7   VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGH 66
           ++ G++G+G + ++ ++ +    +   ++     P           A A          +
Sbjct: 2   LRIGVVGLGGIAQKAWLPVLA-AASDWTLQGAWSPT---------RAKALPICESWRIPY 51

Query: 67  QELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKR 126
            + L S       V   + T     +         HV V+KPL   + D +++V+ A ++
Sbjct: 52  ADSLSSLAASCDAVFVHSSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARK 111

Query: 127 PDILVQVGLEYRYMPPVAK-LIQIVKSGSIGQVKMV 161
             + + VG   R+    A+  I+ V++ ++ Q    
Sbjct: 112 -KLTLMVGFNRRFFVGCARHFIECVQNQTVPQTAGE 146

>d1xeaa2 d.81.1.5 (A:123-266) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} Length = 144

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: Glucose 6-phosphate dehydrogenase-like
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

 Score = 63.7 bits (154), Expect = 5e-13
 Identities = 17/162 (10%), Positives = 47/162 (29%), Gaps = 28/162 (17%)

Query: 138 RYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFD 197
           R++P   + +  +     G ++ +   +H           +    +    + +   H  D
Sbjct: 2   RHIPLYNQHLSELAQQECGALRSLRWEKH----------RHALPGDIRTFVFDDFIHPLD 51

Query: 198 LMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENGSRGMLDLCMFAE 257
            + L    N   +  +                      A + V+++ G   +L   M  +
Sbjct: 52  SVNLSRQCNLDDLHLT--------------YHMSEGLLARLDVQWQTGDT-LLHASMNRQ 96

Query: 258 GSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLK 299
                + +    +      ++ +S  +       +E    LK
Sbjct: 97  FGITTEHVTASYDNVA---YLFDSFTQGKMWRDNQESRVALK 135

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 63.1 bits (152), Expect = 2e-12
 Identities = 27/191 (14%), Positives = 63/191 (32%), Gaps = 17/191 (8%)

Query: 7   VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGH 66
           ++ G++G   + R+    +H       ++  +A   L+  +       A ++P       
Sbjct: 2   IRIGVMGCADIARKVSRAIHLAP--NATISGVASRSLEKAKAFAT---ANNYPESTKIHG 56

Query: 67  QELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKR 126
                    ++  +  P  T   +   I    K  H+L+EKP+   V +  K+VDA    
Sbjct: 57  SYESLLEDPEIDALYVPLPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEAN 116

Query: 127 PDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENTGG 186
             + +  G  + +      + +      +G++K    +            +         
Sbjct: 117 -GVQIMDGTMWVHPQEACMVREFA--RLVGEIKNNGAKPD---------GYWPSISRKTQ 164

Query: 187 TLVEKCCHFFD 197
            +V+      D
Sbjct: 165 LVVDAVKESVD 175

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

 Score = 54.9 bits (131), Expect = 1e-09
 Identities = 18/170 (10%), Positives = 44/170 (25%), Gaps = 20/170 (11%)

Query: 6   TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPG 65
            ++  I+G G +GR     +   +   + +V I                  D    VF  
Sbjct: 3   NIRVAIVGYGNLGRSVEKLIA--KQPDMDLVGIFSRR-----------ATLDTKTPVFDV 49

Query: 66  HQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARK 125
                 +   DV+ +   + T                V             + + +AA  
Sbjct: 50  ADVDKHADDVDVLFLCMGSATDIPEQAPKFAQ-FACTVDTYDNHRDIPRHRQVMNEAATA 108

Query: 126 RPDILV------QVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFP 169
             ++ +              +       ++ + G  G   ++ +  +   
Sbjct: 109 AGNVALVSTGRNPDFTASSQIAFGRAAHRMKQQGQSGAFTVLEVAPYLLS 158

>d2nvwa2 d.81.1.5 (A:155-373) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} Length = 219

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: Glucose 6-phosphate dehydrogenase-like
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

 Score = 51.7 bits (122), Expect = 3e-08
 Identities = 21/221 (9%), Positives = 62/221 (28%), Gaps = 23/221 (10%)

Query: 141 PPVAKLIQIVKSGSIGQVKMVAIREH----RFPFLVKVNDWNRFNENTGGTLVEKCCHFF 196
           P + +  +++  G IG +  + I  +     +   ++  ++    E+    +     H  
Sbjct: 3   PYIVRAKELISEGCIGDINSIEISGNGGWYGYERPMRSPEYLYDIESGVNLISNSFGHTI 62

Query: 197 DLMRLFVGSNPMRVMASGAVDVNHKD-------EMYNGKVPDIIDNAYVIVEFENGSRGM 249
           D+++   GS   ++ A  + ++  +                   D+       ENG   +
Sbjct: 63  DVLQYITGSYFQKINAMISNNIPTQFLLDENGKRTKETISKTCPDHLLFQGILENGKVPV 122

Query: 250 ---LDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAEDDRIE 306
                     +       I + G  G  +       V           +     ++    
Sbjct: 123 SCSFKGGTPVKKLTKNLVIDIHGTKGDLKIEGDAGFVEI-----SNLVLYFYGIKNGNGS 177

Query: 307 YEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAI 347
             G  +  +          +    +  P+    +   ++ +
Sbjct: 178 SNGTDNNGAAAIK--DKEKVT--KSPSPSTGTSEEEQTMEV 214

>d1h6da2 d.81.1.5 (A:213-374) Glucose-fructose oxidoreductase {Zymomonas mobilis [TaxId: 542]} Length = 162

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: Glucose 6-phosphate dehydrogenase-like
domain: Glucose-fructose oxidoreductase
species: Zymomonas mobilis [TaxId: 542]

 Score = 48.1 bits (113), Expect = 2e-07
 Identities = 21/134 (15%), Positives = 43/134 (32%), Gaps = 11/134 (8%)

Query: 141 PPVAKLIQIVKSGSIGQVKMV-AIREHRFPFLVKVNDWN-RFNENTGGTLVEKCCHFFDL 198
           P     +++++   +G++ MV                W  R     GG+L++   +  + 
Sbjct: 2   PMNRAAVKLIRENQLGKLGMVTTDNSDVMDQNDPAQQWRLRRELAGGGSLMDIGIYGLNG 61

Query: 199 MRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENGSRGMLDLCMFAEG 258
            R  +G  P+ V A    D N +  +         D     + F +G+            
Sbjct: 62  TRYLLGEEPIEVRAYTYSDPNDERFVEV------EDRIIWQMRFRSGALSHGASSY---S 112

Query: 259 SKNEQEIVVVGNTG 272
           +       V G+  
Sbjct: 113 TTTTSRFSVQGDKA 126

>d1zh8a2 d.81.1.5 (A:132-275) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} Length = 144

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: Glucose 6-phosphate dehydrogenase-like
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

 Score = 45.3 bits (106), Expect = 2e-06
 Identities = 30/138 (21%), Positives = 49/138 (35%), Gaps = 16/138 (11%)

Query: 139 YMPPVAKLIQIVKSGSIGQVKMVAIREH---RFPFLVKVNDWNRFNENTGGTLVEKCCHF 195
           ++P   K  ++V+SG+IG    +  +              DW +  ++ GG L +   H 
Sbjct: 1   HVPAFWKAKELVESGAIGDPVFMNWQIWVGMDENNKYVHTDWRKKPKHVGGFLSDGGVHH 60

Query: 196 FDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENGSRGMLDLCMF 255
              MRL +G     + A           M              I EFENG+ G   +   
Sbjct: 61  AAAMRLILG-EIEWISAVAKDLSPLLGGMD---------FLSSIFEFENGTVGNYTISYS 110

Query: 256 AEGSKNEQEIVVVGNTGK 273
            +G    +   + G  GK
Sbjct: 111 LKG---NERFEITGTKGK 125

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} Length = 157

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

 Score = 35.8 bits (82), Expect = 0.003
 Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 1/105 (0%)

Query: 4   NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF 63
           N  +K  IIG G +G +  I +    ++ + +  +      S   A              
Sbjct: 2   NQKLKVAIIGSGNIGTDLMIKVLR-NAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGV 60

Query: 64  PGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKP 108
            G  +L +    D V  +T    H Q    +        ++   P
Sbjct: 61  EGLIKLPEFADIDFVFDATSASAHVQNEALLRQAKPGIRLIDLTP 105

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	376
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	100.0
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	100.0
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	100.0
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	100.0
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	100.0
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	99.97
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	99.97
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	99.91
d2nvwa2	219	Galactose/lactose metabolism regulatory protein GA	99.85
d1zh8a2	144	Hypothetical protein TM0312 {Thermotoga maritima [	99.84
d1h6da2	162	Glucose-fructose oxidoreductase {Zymomonas mobilis	99.78
d1ydwa2	171	Probable oxidoreductase At4g09670 {Thale cress (Ar	99.7
d1xeaa2	144	Putative oxidoreductase VCA1048 {Vibrio cholerae [	99.63
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	99.59
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	99.49
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	98.88
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	98.82
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	98.68
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	98.65
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	98.64
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	98.62
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	98.6
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	98.47
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	98.45
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	98.45
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	98.31
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.29
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	98.29
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.27
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.23
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	98.16
d1oi7a1	121	Succinyl-CoA synthetase, alpha-chain, N-terminal (	98.13
d2nu7a1	119	Succinyl-CoA synthetase, alpha-chain, N-terminal (	98.1
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	98.09
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	98.07
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	98.02
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.98
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	97.97
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.95
d1euca1	130	Succinyl-CoA synthetase, alpha-chain, N-terminal (	97.95
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	97.94
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	97.93
d1tlta2	140	Virulence factor MviM {Escherichia coli [TaxId: 56	97.87
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	97.82
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.79
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.79
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	97.79
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.69
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	97.67
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.66
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.58
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	97.56
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	97.52
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.51
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	97.44
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	97.4
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	97.35
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	97.35
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	97.33
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	97.31
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.29
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	97.19
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	97.19
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	97.17
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.15
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	97.15
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.14
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	97.14
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	97.11
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.1
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	97.1
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.1
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.09
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.07
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	97.07
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	97.02
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	97.01
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.01
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	97.01
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.0
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.99
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.99
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	96.97
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	96.96
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.95
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	96.94
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.92
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.88
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.86
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.86
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.86
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.85
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	96.84
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	96.82
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.8
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	96.8
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	96.78
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.74
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	96.72
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	96.71
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	96.68
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.67
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	96.66
d1h9aa1	195	Glucose 6-phosphate dehydrogenase, N-terminal doma	96.65
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	96.64
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.59
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.55
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	96.55
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	96.55
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.53
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	96.53
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	96.51
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	96.47
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.46
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.44
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.43
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	96.41
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.34
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.34
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	96.28
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.19
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	96.15
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.13
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	96.08
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	95.98
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	95.91
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.87
d1qkia1	203	Glucose 6-phosphate dehydrogenase, N-terminal doma	95.81
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	95.79
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	95.78
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	95.7
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	95.68
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	95.59
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	95.56
d1gsoa2	105	Glycinamide ribonucleotide synthetase (GAR-syn), N	95.51
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	95.36
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	95.19
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.05
d2bw0a2	203	10-formyltetrahydrofolate dehydrogenase domain 1 {	94.96
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	94.91
d1vr6a1	338	3-deoxy-D-arabino-heptulosonate-7-phosphate syntha	94.9
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	94.67
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	94.44
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	94.27
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	94.24
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	94.19
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	94.14
d2blna2	203	Polymyxin resistance protein ArnA, N-terminal doma	94.05
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	93.89
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	93.82
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	93.82
d1gr0a1	243	Myo-inositol 1-phosphate synthase {Mycobacterium t	93.75
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	93.64
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	93.38
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	93.38
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	93.33
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	92.99
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	92.89
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	92.71
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	92.71
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	92.64
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	92.43
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	92.43
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	92.37
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	92.31
d1fmta2	206	Methionyl-tRNAfmet formyltransferase {Escherichia	92.14
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	91.84
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	91.38
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	91.28
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	90.48
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	90.34
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	89.97
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	89.45
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	89.45
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	88.94
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	88.91
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	88.37
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	88.34
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	88.26
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	88.08
d1p6qa_	129	CheY protein {Sinorhizobium meliloti, CheY2 [TaxId	88.05
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	88.04
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	87.85
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	87.7
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	87.38
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	87.14
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	87.08
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	87.06
d1dbwa_	123	Transcriptional regulatory protein FixJ, receiver	86.86
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	86.71
d1q7ra_	202	Hypothetical protein YaaE {Bacillus stearothermoph	86.42
d1b74a1	105	Glutamate racemase {Aquifex pyrophilus [TaxId: 271	86.27
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	86.1
d1a2oa1	140	Methylesterase CheB, N-terminal domain {Salmonella	85.93
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	85.93
d1vkza2	90	Glycinamide ribonucleotide synthetase (GAR-syn), N	85.85
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	85.1
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	84.88
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	84.7
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	84.67
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	84.56
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	84.52
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	84.42
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	84.08
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	83.82
d1u6ka1	282	F420-dependent methylenetetrahydromethanopterin de	83.68
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	83.6
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	83.39
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	82.87
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	82.82
d2csua3	163	Acetate-CoA ligase alpha chain, AcdA, domains 2 an	82.47
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	82.19
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	81.9
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	81.85
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	81.74
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	81.69
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	81.65
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	81.44
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	81.35
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	81.32
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	81.28
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	81.19
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	80.94
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	80.83
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	80.64
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	80.39
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	80.38
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	80.27
d2h00a1	250	Methyltransferase 10 domain containing protein MET	80.16
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	80.15

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=100.00  E-value=9.4e-38  Score=272.95  Aligned_cols=196  Identities=18%  Similarity=0.308  Sum_probs=153.2

Q ss_pred             CCCCCceeEEEEeCCh----hhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-CCccCCHHHHhhCCCC
Q 017143            1 MAANDTVKYGIIGMGM----MGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LKVFPGHQELLDSGLC   75 (376)
Q Consensus         1 m~~~~~~~v~iiG~G~----~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~   75 (376)
                      ||+.+++||||||+|.    +++.|++++.++. ++++|+||||++++   ++++++++|+++ ...|++++++++++++
T Consensus        11 ~~~~k~irvgiIG~G~~~~~~~~~h~~ai~~~~-~~~~ivav~d~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~i   86 (237)
T d2nvwa1          11 VPSSRPIRVGFVGLTSGKSWVAKTHFLAIQQLS-SQFQIVALYNPTLK---SSLQTIEQLQLKHATGFDSLESFAQYKDI   86 (237)
T ss_dssp             SGGGCCEEEEEECCCSTTSHHHHTHHHHHHHTT-TTEEEEEEECSCHH---HHHHHHHHTTCTTCEEESCHHHHHHCTTC
T ss_pred             CCCCCCeEEEEEecCccccHHHHHHHHHHHhcC-CCeEEEEEEcCCHH---HHHHHHHhcccccceeecchhhccccccc
Confidence            3445789999999985    5678999997752 78999999999998   678888899887 4678999999999999


Q ss_pred             CEEEEeCCCCccHHHHHHHHcCCCC------CeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHH
Q 017143           76 DVVVVSTPNMTHYQILMDIINHPKP------HHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQI  149 (376)
Q Consensus        76 D~V~i~t~~~~h~~~~~~al~~~~g------~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~  149 (376)
                      |+|+|+||+..|++++++||+  +|      ||||||||++.+.+|+++|.+++++++++.++|++++||.|.++.+|++
T Consensus        87 D~V~i~tp~~~h~~~~~~al~--aG~~~~~~k~V~~EKPla~~~~e~~~l~~~a~~~~~~~~~v~~~~R~~p~~~~~k~~  164 (237)
T d2nvwa1          87 DMIVVSVKVPEHYEVVKNILE--HSSQNLNLRYLYVEWALAASVQQAEELYSISQQRANLQTIICLQGRYNSVVGNILRI  164 (237)
T ss_dssp             SEEEECSCHHHHHHHHHHHHH--HSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCTTCEEEEECGGGCCHHHHHHHHH
T ss_pred             ceeeccCCCcchhhHHHHHHH--hcccccCCceEEEeccccCCHHHHHHHHHHHhhcCCeeEEEEECCcCCHHHHHHHHH
Confidence            999999999999999999999  55      6999999999999999999999966668999999999999999999999


Q ss_pred             HHc----CCCCceEEEEEeeccCCcccccCccccccccCCcccccccc--cHHHHHHHH
Q 017143          150 VKS----GSIGQVKMVAIREHRFPFLVKVNDWNRFNENTGGTLVEKCC--HFFDLMRLF  202 (376)
Q Consensus       150 i~~----g~iG~i~~~~~~~~~~~~~~~~~~w~~~~~~~gG~l~d~g~--H~ld~~~~l  202 (376)
                      |++    |.||+|..++++............|..+...++|.+.+.++  |.+|.+.+.
T Consensus       165 i~~~~~~g~iG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~h~id~v~~~  223 (237)
T d2nvwa1         165 YESIADYHFLGKPESKSSRGPDDLFASTKFDKQGFRFEGFPTFKDAIILHRLIDAVFRS  223 (237)
T ss_dssp             HHHHHHHHHC------------------CCCCCTTCSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHhchhcCeecCEEEEEEEEcCccccCcchhccCccccCCCeehhhhhhchhccccccc
Confidence            975    89999999888654443333333333445577888888766  999988553

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.4e-37  Score=261.72  Aligned_cols=173  Identities=19%  Similarity=0.310  Sum_probs=146.2

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC--CCccCCHHHHhhCCCCCEEEEeCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP--LKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      ++||||||+|.+|+.|++.+...  ++++++||||++++   ++++++++++++  .+.|+|+++|++++++|+|+|+||
T Consensus         1 kiki~iIG~G~~g~~~~~~l~~~--~~~~i~ai~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp   75 (184)
T d1ydwa1           1 QIRIGVMGCADIARKVSRAIHLA--PNATISGVASRSLE---KAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLP   75 (184)
T ss_dssp             CEEEEEESCCTTHHHHHHHHHHC--TTEEEEEEECSSHH---HHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCC
T ss_pred             CeEEEEEcCCHHHHHHHHHHHhC--CCCEEEEEEeCCcc---ccccchhccccccceeecCcHHHhhhccccceeeeccc
Confidence            58999999999999999999888  89999999999988   677888899876  357899999999999999999999


Q ss_pred             CCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEEEE
Q 017143           84 NMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAI  163 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~~~  163 (376)
                      +..|++++++|++  +|+||+||||++.+.+|+++|.+++ +++++.+++++++||+|.+..+|+++  +.||+|..+..
T Consensus        76 ~~~h~~~~~~~l~--~g~~v~~EKP~~~~~~e~~~l~~~~-~~~~~~~~v~~~~r~~~~~~~~k~li--~~iG~I~~~~~  150 (184)
T d1ydwa1          76 TSLHVEWAIKAAE--KGKHILLEKPVAMNVTEFDKIVDAC-EANGVQIMDGTMWVHPQEACMVREFA--RLVGEIKNNGA  150 (184)
T ss_dssp             GGGHHHHHHHHHT--TTCEEEECSSCSSSHHHHHHHHHHH-HTTTCCEEECCCGGGCHHHHHHHHHT--TCC--------
T ss_pred             chhhcchhhhhhh--ccceeecccccccCHHHHHHHHHHH-HhhCCEEEEEEeeecChHHHHHHHHH--HhhCCeEEEEE
Confidence            9999999999999  9999999999999999999999999 66699999999999999999999998  47999987765


Q ss_pred             eeccCCcccccCccccccccCCcccccccccHHH
Q 017143          164 REHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFD  197 (376)
Q Consensus       164 ~~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld  197 (376)
                      +.         ..|+......||.++|+++|.+|
T Consensus       151 ~~---------~~~~~~~~~~g~~i~d~~~h~iD  175 (184)
T d1ydwa1         151 KP---------DGYWPSISRKTQLVVDAVKESVD  175 (184)
T ss_dssp             -------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred             ec---------CCCCCCcccCCCEEEecchhhcc
Confidence            31         22222233468899999999999

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.5e-34  Score=242.20  Aligned_cols=147  Identities=28%  Similarity=0.446  Sum_probs=134.9

Q ss_pred             CCceeEEEEeCChhhHH-HHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeC
Q 017143            4 NDTVKYGIIGMGMMGRE-HFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~-~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t   82 (376)
                      |+++||||||+|.+|+. |++.+.+.. +.+++++|||++++   ++++++++++.+ ..|+|++++++++++|+|+|+|
T Consensus         1 MkkirigiIG~G~~g~~~h~~~l~~~~-~~~~i~~v~d~~~~---~~~~~~~~~~~~-~~~~~~~ell~~~~id~v~I~t   75 (181)
T d1zh8a1           1 LRKIRLGIVGCGIAARELHLPALKNLS-HLFEITAVTSRTRS---HAEEFAKMVGNP-AVFDSYEELLESGLVDAVDLTL   75 (181)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHHHTTT-TTEEEEEEECSSHH---HHHHHHHHHSSC-EEESCHHHHHHSSCCSEEEECC
T ss_pred             CCCcEEEEEcCCHHHHHHHHHHHHhCC-CCeEEEEEEeccHh---hhhhhhcccccc-ceeeeeeccccccccceeeccc
Confidence            56899999999999986 899998762 45899999999998   678888899986 7899999999999999999999


Q ss_pred             CCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeecccc---CHHHHHHHHHHHcCCCCce
Q 017143           83 PNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRY---MPPVAKLIQIVKSGSIGQV  158 (376)
Q Consensus        83 ~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~---~p~~~~~k~~i~~g~iG~i  158 (376)
                      |+..|++++++|++  +||||+||||++.+.+|+++|.+++++ +++.+++++++||   .|.++.+++++++|.||+|
T Consensus        76 p~~~h~~~~~~al~--~gk~V~~EKPl~~~~~e~~~l~~~~~~-~~~~~~v~~~~R~~~~~~~~~~~~~~i~~G~ig~i  151 (181)
T d1zh8a1          76 PVELNLPFIEKALR--KGVHVICEKPISTDVETGKKVVELSEK-SEKTVYIAENFRENSYQKEFEDFYQVVAEGKPNDL  151 (181)
T ss_dssp             CGGGHHHHHHHHHH--TTCEEEEESSSSSSHHHHHHHHHHHHH-CSSCEEEECGGGCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred             cccccccccccccc--cchhhhcCCCCcCCHHHHHHHHHHHHH-hCCeEEEEeeccccccCHHHHHHHHHHHCCCCccC
Confidence            99999999999999  899999999999999999999999954 5999999999995   4788999999999999998

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=100.00  E-value=5.2e-34  Score=245.96  Aligned_cols=154  Identities=19%  Similarity=0.331  Sum_probs=140.4

Q ss_pred             CCCCCceeEEEEeCChhhHH-HHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC---CCccCCHHHHhhCCCCC
Q 017143            1 MAANDTVKYGIIGMGMMGRE-HFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP---LKVFPGHQELLDSGLCD   76 (376)
Q Consensus         1 m~~~~~~~v~iiG~G~~g~~-~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~D   76 (376)
                      |++.+++||||||+|.+|+. |++.+...  ++++|++|||++++   ++++++++||++   +..|+|+++|++++++|
T Consensus        28 ~~~~~~iriaiIG~G~~~~~~~~~~~~~~--~~~~ivav~d~~~~---~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD  102 (221)
T d1h6da1          28 MPEDRRFGYAIVGLGKYALNQILPGFAGC--QHSRIEALVSGNAE---KAKIVAAEYGVDPRKIYDYSNFDKIAKDPKID  102 (221)
T ss_dssp             CCCCCCEEEEEECCSHHHHHTHHHHTTTC--SSEEEEEEECSCHH---HHHHHHHHTTCCGGGEECSSSGGGGGGCTTCC
T ss_pred             CCCCCCEEEEEEcCcHHHHHHHHHHHHhC--CCceEEEEecCCHH---HHHHHHHhhccccccccccCchhhhcccccce
Confidence            45567899999999999974 77888887  89999999999998   678889999986   24689999999999999


Q ss_pred             EEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCC
Q 017143           77 VVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIG  156 (376)
Q Consensus        77 ~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG  156 (376)
                      +|+|+||++.|.+++++|++  +|||||||||++.+.+|+++|.++++ ++++.+++++++||+|.+..+|++++++.+|
T Consensus       103 ~V~I~tp~~~H~~~~~~al~--~gk~v~~EKPla~~~~e~~~l~~~a~-~~~~~~~v~~~~r~~p~~~~~k~li~~~~~g  179 (221)
T d1h6da1         103 AVYIILPNSLHAEFAIRAFK--AGKHVMCEKPMATSVADCQRMIDAAK-AANKKLMIGYRCHYNQFSAQLDHLAEAVINN  179 (221)
T ss_dssp             EEEECSCGGGHHHHHHHHHH--TTCEEEECSSCCSSHHHHHHHHHHHH-HHTCCEEECCGGGGCHHHHHHHHHHHHHHTT
T ss_pred             eeeeccchhhhhhHHHHhhh--cchhhhcCCCccCCHHHHHHHHHHHH-hcCCcEEEeeccccCHHHHHHHHHHHhhhcC
Confidence            99999999999999999999  99999999999999999999999995 5599999999999999999999999999999


Q ss_pred             ceEEEE
Q 017143          157 QVKMVA  162 (376)
Q Consensus       157 ~i~~~~  162 (376)
                      ++..+.
T Consensus       180 ~~i~~~  185 (221)
T d1h6da1         180 KPVRSP  185 (221)
T ss_dssp             CCCSSB
T ss_pred             CeEeec
Confidence            876544

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.8e-33  Score=229.91  Aligned_cols=146  Identities=22%  Similarity=0.422  Sum_probs=133.3

Q ss_pred             ceeEEEEeCChhhHH-HHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIGMGMMGRE-HFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~-~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      |+||||||+|.+|.. |++.+...  +++++++|||++++   ++++++++|+++  .|+++++++++  +|+|+|+||+
T Consensus         1 Kiri~iIG~G~~g~~~~~~~l~~~--~~~~i~~v~d~~~~---~~~~~~~~~~~~--~~~~~~~l~~~--~D~V~I~tp~   71 (164)
T d1tlta1           1 KLRIGVVGLGGIAQKAWLPVLAAA--SDWTLQGAWSPTRA---KALPICESWRIP--YADSLSSLAAS--CDAVFVHSST   71 (164)
T ss_dssp             CEEEEEECCSTHHHHTHHHHHHSC--SSEEEEEEECSSCT---THHHHHHHHTCC--BCSSHHHHHTT--CSEEEECSCT
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHhC--CCcEEEEEEechhH---hhhhhhhccccc--ccccchhhhhh--cccccccccc
Confidence            589999999999975 89999888  89999999999998   677888899976  89999999864  9999999999


Q ss_pred             CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHH-HHHHHHHHcCCCCceEEEEE
Q 017143           85 MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPV-AKLIQIVKSGSIGQVKMVAI  163 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~-~~~k~~i~~g~iG~i~~~~~  163 (376)
                      ..|++++.+||+  +||||+||||++.+.+|+++|.+++ +++|+.+++++++||.|.+ +.+++++++|.+|++..+..
T Consensus        72 ~~h~~~~~~al~--~gk~V~~EKPla~~~~e~~~l~~~a-~~~~~~~~v~~~~r~~~~~~~~~~~~i~~g~ig~~~~~~~  148 (164)
T d1tlta1          72 ASHFDVVSTLLN--AGVHVCVDKPLAENLRDAERLVELA-ARKKLTLMVGFNRRFFVGCARHFIECVQNQTVPQTAGEQA  148 (164)
T ss_dssp             THHHHHHHHHHH--TTCEEEEESSSCSSHHHHHHHHHHH-HHTTCCEEEECGGGGHHHHHHHHHHHHHHTCCCTTSGGGG
T ss_pred             hhcccccccccc--ccceeeccccccCCHHHHHHHHHHH-HHcCCcEEEEeccccCHHHHHHHHHHHHCCCCCCEEEEEE
Confidence            999999999999  9999999999999999999999999 5569999999999999876 57999999999999965543

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=99.97  E-value=9e-32  Score=222.29  Aligned_cols=142  Identities=17%  Similarity=0.296  Sum_probs=130.4

Q ss_pred             ceeEEEEeCChhhHH-HHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIGMGMMGRE-HFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~-~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      +|||||||+|.+|.. |++.+...  ++++++ +||++++   ++++++++++++ ..|+|++++++ +++|+|+|+||+
T Consensus         1 tirvgiiG~G~~~~~~~~~~l~~~--~~~~~~-~~d~~~~---~~~~~~~~~~~~-~~~~~~~~ll~-~~iD~V~I~tp~   72 (167)
T d1xeaa1           1 SLKIAMIGLGDIAQKAYLPVLAQW--PDIELV-LCTRNPK---VLGTLATRYRVS-ATCTDYRDVLQ-YGVDAVMIHAAT   72 (167)
T ss_dssp             CEEEEEECCCHHHHHTHHHHHTTS--TTEEEE-EECSCHH---HHHHHHHHTTCC-CCCSSTTGGGG-GCCSEEEECSCG
T ss_pred             CeEEEEEcCCHHHHHHHHHHHHhC--CCcEEE-EEECCHH---HHHHHHHhcccc-cccccHHHhcc-cccceecccccc
Confidence            489999999999975 89999888  899986 8999988   678888999986 78999999997 479999999999


Q ss_pred             CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceE
Q 017143           85 MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVK  159 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~  159 (376)
                      +.|++++.+|++  +|+||+||||++.+.+|+++|.+++++ +++.+++||+ ||.|.++.+++.++.|++|.+.
T Consensus        73 ~~H~~~~~~al~--~gk~V~~EKP~~~~~~e~~~l~~~a~~-~~~~~~vg~~-r~~~~~~~~~~~~~~G~ig~~~  143 (167)
T d1xeaa1          73 DVHSTLAAFFLH--LGIPTFVDKPLAASAQECENLYELAEK-HHQPLYVGFN-GFDAMVQDWLQVAAAGKLPTHI  143 (167)
T ss_dssp             GGHHHHHHHHHH--TTCCEEEESCSCSSHHHHHHHHHHHHH-TTCCEEEECG-THHHHHHHHHHHHHHTCCCHHH
T ss_pred             cccccccccccc--cccccccCCCCcCCHHHHHHHHHHHHH-cCCEEEEEeC-cCCHHHHHHHHHhhcCCCCcEE
Confidence            999999999999  899999999999999999999999955 5999999996 9999999999999999999774

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=5.1e-32  Score=224.83  Aligned_cols=150  Identities=15%  Similarity=0.163  Sum_probs=125.9

Q ss_pred             CCCCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEE
Q 017143            1 MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         1 m~~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      |+.+.++||||||+|.+|+.|++.+...  +..+++++++....+     +.+...+   ..+.|++++++++++|+|+|
T Consensus         2 ~~~~~k~kv~iIG~G~~g~~h~~~l~~~--~~~~~~~~~~~~~~~-----~~~~~~~---~~~~~~~e~l~~~~iD~V~I   71 (172)
T d1lc0a1           2 ITNSGKFGVVVVGVGRAGSVRLRDLKDP--RSAAFLNLIGFVSRR-----ELGSLDE---VRQISLEDALRSQEIDVAYI   71 (172)
T ss_dssp             CCCCCSEEEEEECCSHHHHHHHHHHTSH--HHHTTEEEEEEECSS-----CCCEETT---EEBCCHHHHHHCSSEEEEEE
T ss_pred             CCCCCCcEEEEEcCCHHHHHHHHHHHhC--CCCcEEEEEeccchH-----HHHHhhc---cCcCCHHHHHhCCCcchhhh
Confidence            3566799999999999999999999887  444445555433221     1111223   23568999999999999999


Q ss_pred             eCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEE
Q 017143           81 STPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKM  160 (376)
Q Consensus        81 ~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~  160 (376)
                      +||++.|++++.+||+  +|+||+||||++.+++|+++|.++++ ++|+.+++++++||.|.++.+|+++++|.||+|..
T Consensus        72 ~tp~~~H~~~~~~al~--~gk~V~~EKP~a~~~~e~~~l~~~a~-~~~~~~~v~~~~r~~p~~~~~k~~i~~~~lG~i~~  148 (172)
T d1lc0a1          72 CSESSSHEDYIRQFLQ--AGKHVLVEYPMTLSFAAAQELWELAA-QKGRVLHEEHVELLKNIFLKDQDIFVQKLLDQVSA  148 (172)
T ss_dssp             CSCGGGHHHHHHHHHH--TTCEEEEESCSCSCHHHHHHHHHHHH-HTTCCEEEECGGGGTTHHHHHHHHHHHHHTTCSCH
T ss_pred             cccccccccccccccc--cchhhhcCCCccccHHHHHHHHHHHH-HcCCeEEEecHHHhhHHHHHHHHHHHcCCCCCEEE
Confidence            9999999999999999  99999999999999999999999995 55999999999999999999999999999999966


Q ss_pred             EEE
Q 017143          161 VAI  163 (376)
Q Consensus       161 ~~~  163 (376)
                      ...
T Consensus       149 ~~~  151 (172)
T d1lc0a1         149 EDL  151 (172)
T ss_dssp             HHH
T ss_pred             EEE
Confidence            544

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=99.91  E-value=1.5e-25  Score=184.83  Aligned_cols=142  Identities=11%  Similarity=0.047  Sum_probs=120.0

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      |+++||||||+|.+|+.|++.+.+.  +++++++|+|++++.       ....++  ..+.++++++.  ++|+|+||||
T Consensus         1 M~kirvgiiG~G~ig~~~~~~l~~~--~~~elvav~~~~~~~-------~~~~~~--~~~~~~~~~~~--~~D~Vvi~tp   67 (170)
T d1f06a1           1 MTNIRVAIVGYGNLGRSVEKLIAKQ--PDMDLVGIFSRRATL-------DTKTPV--FDVADVDKHAD--DVDVLFLCMG   67 (170)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHTTC--SSEEEEEEEESSSCC-------SSSSCE--EEGGGGGGTTT--TCSEEEECSC
T ss_pred             CCcceEEEECChHHHHHHHHHHHhC--CCcEEEEEEeccccc-------cccccc--ccchhhhhhcc--ccceEEEeCC
Confidence            4579999999999999999999998  899999999998763       112232  35566766665  4999999999


Q ss_pred             CCccHHHHHHHHcCCCCCeEE-EecCCCCCHHHHHHHHHHHHhCCCeEEEEe-------eccccCHHHHHHHHHHHcCCC
Q 017143           84 NMTHYQILMDIINHPKPHHVL-VEKPLCTTVADCKKVVDAARKRPDILVQVG-------LEYRYMPPVAKLIQIVKSGSI  155 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl-~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~-------~~~r~~p~~~~~k~~i~~g~i  155 (376)
                      +..|.+++.+||+  +||||+ ||||++.+++++++|.++| ++++..++++       ++.|+.+..+.++++++.|.+
T Consensus        68 ~~~h~~~a~~aL~--aG~~vv~~~~~~~~~~~~~~~l~~~A-~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~G~i  144 (170)
T d1f06a1          68 SATDIPEQAPKFA--QFACTVDTYDNHRDIPRHRQVMNEAA-TAAGNVALVSTGRNPDFTASSQIAFGRAAHRMKQQGQS  144 (170)
T ss_dssp             TTTHHHHHHHHHT--TTSEEECCCCCGGGHHHHHHHHHHHH-HHHTCEEECSCSCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CcccHHHHHHHHH--CCCcEEEecCccccCHHHHHHHHHHH-HhcCceEEEeceeccchhHHHHHHHHHHHHHHHhcCCC
Confidence            9999999999999  999966 8899999999999999999 5558888888       677788888889999999999


Q ss_pred             CceEEE
Q 017143          156 GQVKMV  161 (376)
Q Consensus       156 G~i~~~  161 (376)
                      |.+..+
T Consensus       145 g~~~~~  150 (170)
T d1f06a1         145 GAFTVL  150 (170)
T ss_dssp             EEECGG
T ss_pred             cceEee
Confidence            887543

>d2nvwa2 d.81.1.5 (A:155-373) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: Glucose 6-phosphate dehydrogenase-like
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=99.85  E-value=9e-22  Score=168.92  Aligned_cols=198  Identities=10%  Similarity=0.053  Sum_probs=111.7

Q ss_pred             CHHHHHHHHHHHcCCCCceEEEEEeecc----CCcccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecc
Q 017143          140 MPPVAKLIQIVKSGSIGQVKMVAIREHR----FPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGA  215 (376)
Q Consensus       140 ~p~~~~~k~~i~~g~iG~i~~~~~~~~~----~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~  215 (376)
                      +|.++++|++|++|.||+|+.+++.++.    ...++.+..|+.+.+.+||.++|+|+|.+|+++||+|++|++|+|...
T Consensus         2 ~P~~~~~k~lI~~G~iG~v~~v~~~~~~~~~~~~~~~~~~~w~~~~~~gGG~l~d~g~H~iD~~~~l~G~~~~~V~a~~~   81 (219)
T d2nvwa2           2 SPYIVRAKELISEGCIGDINSIEISGNGGWYGYERPMRSPEYLYDIESGVNLISNSFGHTIDVLQYITGSYFQKINAMIS   81 (219)
T ss_dssp             CHHHHHHHHHHHTTTTCSEEEEEEEEECSBSSSEEETTCCGGGGCGGGSCSTTTTHHHHHHHHHHHHHTCCEEEEEEEEE
T ss_pred             ChHHHHHHHHHHCCCCcCeEEEEEEEEcccccccccccCcchhhcccccCcchhhhhhhhhhhhHhhcCCCceEEEEEee
Confidence            6999999999999999999999885332    223344568888888999999999999999999999988999999976


Q ss_pred             cccccCcc-------ccCCCCCcccccEEEEEEecCCcEEEEEEEEeec---CCCCceEEEEEecCCeeeeecccceeee
Q 017143          216 VDVNHKDE-------MYNGKVPDIIDNAYVIVEFENGSRGMLDLCMFAE---GSKNEQEIVVVGNTGKGEAFVPESIVRF  285 (376)
Q Consensus       216 ~~~~~~~~-------~~~~~~~~~~d~~~~~l~~~~G~~~~l~~~~~~~---~~~~~~~~~i~Gt~G~i~~~~~~~~~~~  285 (376)
                      ........       .......+++|++.++++|+||.++.+...+...   ......+++|+|++|+|.++.+......
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~f~~G~~~~~~~~~~~~~~~~~~~~~~~~I~Gs~G~l~~~~~~~~~~~  161 (219)
T d2nvwa2          82 NNIPTQFLLDENGKRTKETISKTCPDHLLFQGILENGKVPVSCSFKGGTPVKKLTKNLVIDIHGTKGDLKIEGDAGFVEI  161 (219)
T ss_dssp             CCCSEEEEEC--CCCCSCEEECCSCCEEEEEEEESGGGCEEEEEEECBSSCCSSSCSEEEEEEESSCEEEEEEC------
T ss_pred             eecccccccccccccccccccccceeEEEEEEEeCCCcEEEEEEEEeeccccCCCCceeeEEEecccEEEEecCCCcccc
Confidence            64322110       0001134689999999999999988665444322   2234568999999999998755433222


Q ss_pred             ecccCCccceEEeeccCccccccCCCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 017143          286 ATREAGREDVQTLKAEDDRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVA  346 (376)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~i~~~~~~~~~~~~~d~~~~~~  346 (376)
                      ..     ..........  .............++..|.++++  +...+..+.+++.++++
T Consensus       162 ~~-----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~~~~~~~~~~e  213 (219)
T d2nvwa2         162 SN-----LVLYFYGIKN--GNGSSNGTDNNGAAAIKDKEKVT--KSPSPSTGTSEEEQTME  213 (219)
T ss_dssp             CC-----EEEEEEEESC--C-----------------------------------CCEEEE
T ss_pred             Cc-----ceeEecCccc--cccccCCCCcchHHHHHHHHHHc--CCCCCCCCHHHHHHHhh
Confidence            10     0000011111  11111112334457889999998  77778788887765544

>d1zh8a2 d.81.1.5 (A:132-275) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: Glucose 6-phosphate dehydrogenase-like
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=99.84  E-value=1.4e-20  Score=150.66  Aligned_cols=128  Identities=23%  Similarity=0.260  Sum_probs=105.2

Q ss_pred             cCHHHHHHHHHHHcCCCCceEEEEEeeccCC---cccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecc
Q 017143          139 YMPPVAKLIQIVKSGSIGQVKMVAIREHRFP---FLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGA  215 (376)
Q Consensus       139 ~~p~~~~~k~~i~~g~iG~i~~~~~~~~~~~---~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~  215 (376)
                      |.|.++++|++|++|.||+|+.+++++....   ......+|+.+.+.+||+++|+|+|.+|+++|++| +|++|++...
T Consensus         1 ~~P~~~~~k~lI~~g~iG~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~GG~l~d~g~H~id~~~~l~G-~~~~v~a~~~   79 (144)
T d1zh8a2           1 HVPAFWKAKELVESGAIGDPVFMNWQIWVGMDENNKYVHTDWRKKPKHVGGFLSDGGVHHAAAMRLILG-EIEWISAVAK   79 (144)
T ss_dssp             GCHHHHHHHHHHHTTTTSSEEEEEEEEEBCCCTTCSGGGCHHHHTTCSTTTHHHHHHHHHHHHHHHHHC-CEEEEEEEEE
T ss_pred             CcHHHHHHHHHHHCCCCCCEEEEEEEEecCcCccccccccccccchhhhhhhHHHhhHHHHHHHHhccC-CCeEEEEEEE
Confidence            6799999999999999999999998654332   22345689888888999999999999999999999 7999999866


Q ss_pred             cccccCccccCCCCCcccccEEEEEEecCCcEEEEEEEEeecCCCCceEEEEEecCCeeeeecc
Q 017143          216 VDVNHKDEMYNGKVPDIIDNAYVIVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVP  279 (376)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~d~~~~~l~~~~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~  279 (376)
                      ....         ..+.+|.+.++++|+||+++++.+++..   ....+++|+|++|+|.++.+
T Consensus        80 ~~~~---------~~~~~D~~~~~l~~~nG~~~~~~~s~~~---~~~~~~~i~G~~G~i~~~~~  131 (144)
T d1zh8a2          80 DLSP---------LLGGMDFLSSIFEFENGTVGNYTISYSL---KGNERFEITGTKGKISISWD  131 (144)
T ss_dssp             CCCT---------TSSSCCEEEEEEEETTSCEEEEEEESSS---BCCCEEEEEESSCEEEEETT
T ss_pred             eccC---------CcCcceeEEEEEEcCCCcEEEEEEEecc---CCCCEEEEEeCCEEEEEeCC
Confidence            5322         1257899999999999999999887643   23347999999999998654

>d1h6da2 d.81.1.5 (A:213-374) Glucose-fructose oxidoreductase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: Glucose 6-phosphate dehydrogenase-like
domain: Glucose-fructose oxidoreductase
species: Zymomonas mobilis [TaxId: 542]

Probab=99.78  E-value=4.4e-19  Score=144.68  Aligned_cols=129  Identities=16%  Similarity=0.222  Sum_probs=104.8

Q ss_pred             CHHHHHHHHHHHcCCCCceEEEEEeeccC-CcccccCccccccc-cCCcccccccccHHHHHHHHhCCCCeEEEEecccc
Q 017143          140 MPPVAKLIQIVKSGSIGQVKMVAIREHRF-PFLVKVNDWNRFNE-NTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVD  217 (376)
Q Consensus       140 ~p~~~~~k~~i~~g~iG~i~~~~~~~~~~-~~~~~~~~w~~~~~-~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~  217 (376)
                      +|.++.+|++|++|.||+|+.+++.+... +....+.+|+.+++ .+||+++|+|+|.+|+++|++|.+|++|.+.....
T Consensus         1 ~P~~~~~~~li~~g~iG~i~~v~~~~~~~~~~~~~~~~wr~~~~~~ggG~l~d~g~h~id~~~~l~g~~~~~v~a~~~~~   80 (162)
T d1h6da2           1 DPMNRAAVKLIRENQLGKLGMVTTDNSDVMDQNDPAQQWRLRRELAGGGSLMDIGIYGLNGTRYLLGEEPIEVRAYTYSD   80 (162)
T ss_dssp             CHHHHHHHHHHHTTSSCSEEEEEEEEECCCCTTSHHHHGGGCHHHHSSSHHHHTHHHHHHHHHHHHTSCEEEEEEEEECC
T ss_pred             ChhHHHHHHHHHCCCCCCeEEEEEEEecccCCCCCccccccchhhchhhhhhhcchhHHHHHHHHhcCCCeEEEEEeecc
Confidence            59999999999999999999998865443 23334668887655 57899999999999999999998899999887654


Q ss_pred             cccCccccCCCCCcccccEEEEEEecCCcEEEEEEEEeecCCCCceEEEEEecCCeeeee
Q 017143          218 VNHKDEMYNGKVPDIIDNAYVIVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAF  277 (376)
Q Consensus       218 ~~~~~~~~~~~~~~~~d~~~~~l~~~~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~  277 (376)
                      ....      ...+++|++.++++|+||+++++.+++.   .....+++|+|++|+|+++
T Consensus        81 ~~~~------~~~~v~d~~~~~~~~~~G~~~~~~~s~~---~~~~~~~~I~GtkG~i~~~  131 (162)
T d1h6da2          81 PNDE------RFVEVEDRIIWQMRFRSGALSHGASSYS---TTTTSRFSVQGDKAVLLMD  131 (162)
T ss_dssp             TTCG------GGSSSCSEEEEEEEETTSCEEEEEEESS---SCCEEEEEEEESSCEEEES
T ss_pred             cccc------cccccceeeEEEEEcCCCeEEEEEEecc---cCCCCEEEEEEcccEEEEc
Confidence            3321      1236889999999999999999987753   3345589999999999986

>d1ydwa2 d.81.1.5 (A:134-304) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: Glucose 6-phosphate dehydrogenase-like
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.70  E-value=5.4e-18  Score=139.28  Aligned_cols=127  Identities=20%  Similarity=0.088  Sum_probs=99.5

Q ss_pred             CHHHHHHHHHHH-cCCCCceEEEEEeeccCC-cccccCcccccccc-CCcccccccccHHHHHHHHhCC-CCeEEEEecc
Q 017143          140 MPPVAKLIQIVK-SGSIGQVKMVAIREHRFP-FLVKVNDWNRFNEN-TGGTLVEKCCHFFDLMRLFVGS-NPMRVMASGA  215 (376)
Q Consensus       140 ~p~~~~~k~~i~-~g~iG~i~~~~~~~~~~~-~~~~~~~w~~~~~~-~gG~l~d~g~H~ld~~~~l~G~-~~~~V~a~~~  215 (376)
                      +|.++++|++|+ +|.||+|.+|++.+.... ....+.+|+.+... +||+|+|+|+|.+|+++||+|. .+..+.+...
T Consensus         1 hP~~~~ikeli~d~g~iG~i~~i~a~f~~~~~~~~~~~~~r~~~~~~GGG~l~D~G~y~i~~~~~l~g~~~~~~~~~~~~   80 (171)
T d1ydwa2           1 NPRTALLKEFLSDSERFGQLKTVQSCFSFAGDEDFLKNDIRVKPGLDGLGALGDAGWYAIRATLLANNFELPKTVTAFPG   80 (171)
T ss_dssp             SGGGTTTTTGGGCTTTTCSEEEEEEEEEEECCHHHHHHCGGGCTTSSTTHHHHHTHHHHHHHHHHHTTTCCCSEEEECSC
T ss_pred             CccHHHHHHHHhccCcCCCEEEEEEEEeccCchhhccceeecccccccCCchhhcchHHHHHHHHHhCCccceEEEeeec
Confidence            588999999996 789999999998654321 12234678777664 7999999999999999999996 4667776654


Q ss_pred             cccccCccccCCCCCcccccEEEEEEecCCcEEEEEEEEeecCCCCceEEEEEecCCeeeeec
Q 017143          216 VDVNHKDEMYNGKVPDIIDNAYVIVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFV  278 (376)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~d~~~~~l~~~~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~  278 (376)
                      ....         ..+++|.+.++|+|+||+++++.+++..   ....+++|+|++|+|+++.
T Consensus        81 ~~~~---------~~~vdd~~~~~l~f~nG~~a~~~~s~~~---~~~~~~~I~GtkG~I~i~~  131 (171)
T d1ydwa2          81 AVLN---------EAGVILSCGASLSWEDGRTATIYCSFLA---NLTMEITAIGTKGTLRVHD  131 (171)
T ss_dssp             CEEC---------TTSCEEEEEEEEECSSSCEEEEEEESEE---EEEEEEEEEESSEEEEESS
T ss_pred             cccC---------CCCCccEEEEEEEeCCCceEEEEeeeee---cCCCEEEEEeCcEEEEECC
Confidence            3221         2268999999999999999999988754   2345899999999999863

>d1xeaa2 d.81.1.5 (A:123-266) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: Glucose 6-phosphate dehydrogenase-like
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=99.63  E-value=4.4e-16  Score=123.83  Aligned_cols=119  Identities=11%  Similarity=0.023  Sum_probs=87.9

Q ss_pred             cccCHHHHHHHHHHHcCCCCceEEEEEeeccCCcccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEeccc
Q 017143          137 YRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAV  216 (376)
Q Consensus       137 ~r~~p~~~~~k~~i~~g~iG~i~~~~~~~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~  216 (376)
                      +||+|.++++|+.+++|.+|+|..++...++...          ....+|.++|.+||.+|+++||+|+++.+|++....
T Consensus         1 RRf~P~~~~~~~~~~~g~~G~~~~v~~~~~~~~~----------p~~~~~~l~d~~iH~iD~~~~l~g~~~~~v~a~~~~   70 (144)
T d1xeaa2           1 RRHIPLYNQHLSELAQQECGALRSLRWEKHRHAL----------PGDIRTFVFDDFIHPLDSVNLSRQCNLDDLHLTYHM   70 (144)
T ss_dssp             GGCCHHHHHHCHHHHHTSCTTCSEEEEEEECBSC----------CBCHHHHHHTTTHHHHHHHCTTCCCSCTTEEEEEEE
T ss_pred             CCcCHHHHHHHHHHHcCCCCCcEEEEEEeccCCC----------CCCCCceEEEccccHHHHHHHHcCCCceEEEEEeec
Confidence            5999999999999999999999999875444221          223457899999999999999999989999998654


Q ss_pred             ccccCccccCCCCCcccccEEEEEEecCCcEEEEEEEEeecCCCCceEEEEEecCCeeeeeccc
Q 017143          217 DVNHKDEMYNGKVPDIIDNAYVIVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPE  280 (376)
Q Consensus       217 ~~~~~~~~~~~~~~~~~d~~~~~l~~~~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~  280 (376)
                      .              .+|...+.+.|++|..+... ++...++....+++|+|++|++.++...
T Consensus        71 ~--------------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~e~iev~G~~G~l~v~~~~  119 (144)
T d1xeaa2          71 S--------------EGLLARLDVQWQTGDTLLHA-SMNRQFGITTEHVTASYDNVAYLFDSFT  119 (144)
T ss_dssp             E--------------TTEEEEEEEEEEETTEEEEE-EEETTBSSCEEEEEEEETTEEEEESSSS
T ss_pred             c--------------CccceeEEEEECCCCEEEEE-EEeccccCCcEEEEEEcCCCEEEEeccc
Confidence            2              23444555555555443332 3334444555689999999999987543

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=99.59  E-value=1.9e-15  Score=120.92  Aligned_cols=97  Identities=19%  Similarity=0.222  Sum_probs=81.2

Q ss_pred             CceeEEEEeCChhhHH-HHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhC---CCCCEEEE
Q 017143            5 DTVKYGIIGMGMMGRE-HFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDS---GLCDVVVV   80 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~-~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~D~V~i   80 (376)
                      +++||||||+|.+|.. +.+.++..  +.+++++|++++++.  +..++++++|++ ..+++++++++.   +++|+|++
T Consensus         3 kkirvaIIGaG~ig~~~~~~~l~~~--~~~el~avas~~~~~--~~~~~a~~~~i~-~~~~~~d~l~~~~~~~~iDiVf~   77 (157)
T d1nvmb1           3 QKLKVAIIGSGNIGTDLMIKVLRNA--KYLEMGAMVGIDAAS--DGLARAQRMGVT-TTYAGVEGLIKLPEFADIDFVFD   77 (157)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHC--SSEEEEEEECSCTTC--HHHHHHHHTTCC-EESSHHHHHHHSGGGGGEEEEEE
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHhhC--CcceEEEEEecchhc--cchhhhhhcCCc-ccccceeeeeecccccccCEEEE
Confidence            5799999999999985 56777766  899999999998764  455778899987 666778888775   36899999


Q ss_pred             eCCCCccHHHH--HHHHcCCCCCeEEEecC
Q 017143           81 STPNMTHYQIL--MDIINHPKPHHVLVEKP  108 (376)
Q Consensus        81 ~t~~~~h~~~~--~~al~~~~g~~Vl~EKP  108 (376)
                      +||+..|.++.  .++++  +|++|+..+|
T Consensus        78 ATpag~h~~~~~~~~aa~--~G~~VID~s~  105 (157)
T d1nvmb1          78 ATSASAHVQNEALLRQAK--PGIRLIDLTP  105 (157)
T ss_dssp             CSCHHHHHHHHHHHHHHC--TTCEEEECST
T ss_pred             cCCchhHHHhHHHHHHHH--cCCEEEEccc
Confidence            99999997754  66789  8999999999

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.88  E-value=7.6e-09  Score=83.46  Aligned_cols=95  Identities=18%  Similarity=0.187  Sum_probs=73.0

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC---------------CCccCCHHHHh
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP---------------LKVFPGHQELL   70 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~l   70 (376)
                      |+||||.|+|+||+.+++++...  ++++|++|.|+++...  + ....+++..               +....++.+++
T Consensus         1 MIKVaINGfGRIGR~v~Ral~~~--~dievVaInd~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~   75 (178)
T d1b7go1           1 MVNVAVNGYGTIGKRVADAIIKQ--PDMKLVGVAKTSPNYE--A-FIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLI   75 (178)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTC--TTEEEEEEECSSCSHH--H-HHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHH
T ss_pred             CeEEEEECCCHHHHHHHHHHHhC--CCCEEEEEECCCCcHH--H-HHhcccCcceeccCccceeccccceecCCchhhhh
Confidence            58999999999999999999887  8999999999987631  2 222222211               11344566666


Q ss_pred             hCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCC
Q 017143           71 DSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPL  109 (376)
Q Consensus        71 ~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~  109 (376)
                      +.  +|+|+-|||...+.+.+...++  +|+.|++--|.
T Consensus        76 ~~--vDiViecTG~f~~~e~a~~hl~--~G~KvIi~~~~  110 (178)
T d1b7go1          76 KT--SDIVVDTTPNGVGAQYKPIYLQ--LQRNAIFQGGE  110 (178)
T ss_dssp             HH--CSEEEECCSTTHHHHHHHHHHH--TTCEEEECTTS
T ss_pred             hc--CCEEEECCCCcCCHHHHHHHHH--cCCEEEEECCC
Confidence            55  8999999999999999999999  78888886553

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.82  E-value=4.4e-08  Score=77.29  Aligned_cols=98  Identities=18%  Similarity=0.362  Sum_probs=73.0

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      |||||||+|.||...+..|.+.   +.+++ +++++++   +.+++++++|+.  .+.+.+++++.  .|+|++|++|+.
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~---~~~i~-v~~r~~~---~~~~l~~~~g~~--~~~~~~~~~~~--~dvIilavkp~~   69 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQT---PHELI-ISGSSLE---RSKEIAEQLALP--YAMSHQDLIDQ--VDLVILGIKPQL   69 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTS---SCEEE-EECSSHH---HHHHHHHHHTCC--BCSSHHHHHHT--CSEEEECSCGGG
T ss_pred             CEEEEEeccHHHHHHHHHHHhC---CCeEE-EEcChHH---hHHhhcccccee--eechhhhhhhc--cceeeeecchHh
Confidence            6899999999999988888764   56765 7899887   677888888965  77899999987  899999998754


Q ss_pred             cHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHH
Q 017143           87 HYQILMDIINHPKPHHVLVEKPLCTTVADCKKV  119 (376)
Q Consensus        87 h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l  119 (376)
                       .+-+++.++  .++ +++-=-.+.+.++.++.
T Consensus        70 -~~~vl~~l~--~~~-~iis~~agi~~~~l~~~   98 (152)
T d2ahra2          70 -FETVLKPLH--FKQ-PIISMAAGISLQRLATF   98 (152)
T ss_dssp             -HHHHHTTSC--CCS-CEEECCTTCCHHHHHHH
T ss_pred             -HHHHhhhcc--cce-eEecccccccHHHHHhh
Confidence             444455566  444 44444445576665554

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=98.68  E-value=2e-07  Score=74.43  Aligned_cols=105  Identities=16%  Similarity=0.255  Sum_probs=68.5

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      |||+|||+|.||...+..+.+.   +.+|++ +|++++..++++    +.++-....++. +.+++  .|+|++++|+..
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~---g~~V~~-~d~~~~~~~~a~----~~~~~~~~~~~~-~~~~~--~DiIilavp~~~   69 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRR---GHYLIG-VSRQQSTCEKAV----ERQLVDEAGQDL-SLLQT--AKIIFLCTPIQL   69 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCEEEE-ECSCHHHHHHHH----HTTSCSEEESCG-GGGTT--CSEEEECSCHHH
T ss_pred             CEEEEEeecHHHHHHHHHHHHC---CCEEEE-EECCchHHHHHH----Hhhccceeeeec-ccccc--cccccccCcHhh
Confidence            6899999999999988888764   889875 799987544332    334311334444 45554  899999999887


Q ss_pred             cHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHH
Q 017143           87 HYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAA  123 (376)
Q Consensus        87 h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a  123 (376)
                      -.+++.+....-....+++.-- +........+.+..
T Consensus        70 ~~~vl~~l~~~l~~~~iv~~~~-s~~~~~~~~~~~~~  105 (165)
T d2f1ka2          70 ILPTLEKLIPHLSPTAIVTDVA-SVKTAIAEPASQLW  105 (165)
T ss_dssp             HHHHHHHHGGGSCTTCEEEECC-SCCHHHHHHHHHHS
T ss_pred             hhhhhhhhhhhcccccceeecc-ccchHHHHHHHHhh
Confidence            6666666544224566777652 33455545444443

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=98.65  E-value=6.8e-08  Score=76.20  Aligned_cols=99  Identities=14%  Similarity=0.126  Sum_probs=68.6

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      |||+|||+|.||...+..|.+.  ...++. ++|++++   +.+++++++++.  .+++.+++ .  +.|+|+++++|+ 
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~--~~~~i~-v~~r~~~---~~~~l~~~~~~~--~~~~~~~v-~--~~Div~lavkP~-   68 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQ--GGYRIY-IANRGAE---KRERLEKELGVE--TSATLPEL-H--SDDVLILAVKPQ-   68 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH--CSCEEE-EECSSHH---HHHHHHHHTCCE--EESSCCCC-C--TTSEEEECSCHH-
T ss_pred             CEEEEEcCcHHHHHHHHHHHHC--CCCcEE-EEeCChh---HHHHhhhhcccc--cccccccc-c--ccceEEEecCHH-
Confidence            6899999999999998888776  445654 8999998   677888888865  66776664 3  379999999974 


Q ss_pred             cHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHH
Q 017143           87 HYQILMDIINHPKPHHVLVEKPLCTTVADCKKV  119 (376)
Q Consensus        87 h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l  119 (376)
                      +..-+.+-++  ...++++-==...+.+..++.
T Consensus        69 ~~~~v~~~l~--~~~~~viS~~ag~~~~~l~~~   99 (152)
T d1yqga2          69 DMEAACKNIR--TNGALVLSVAAGLSVGTLSRY   99 (152)
T ss_dssp             HHHHHHTTCC--CTTCEEEECCTTCCHHHHHHH
T ss_pred             HHHHhHHHHh--hcccEEeecccCCCHHHHHHH
Confidence            3333333344  334555544445566664443

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.64  E-value=6.9e-08  Score=77.38  Aligned_cols=95  Identities=17%  Similarity=0.200  Sum_probs=69.6

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC----------------CccCCHHHH
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL----------------KVFPGHQEL   69 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~   69 (376)
                      ++||||.|.|+||+.+++++...  +++++++|.|+++..   ......+++++.                ....++.++
T Consensus         2 ~irIaINGfGRIGR~v~Ral~~~--~dieiVaINd~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (172)
T d2czca2           2 KVKVGVNGYGTIGKRVAYAVTKQ--DDMELIGITKTKPDF---EAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDL   76 (172)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTC--TTEEEEEEEESSCSH---HHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHH
T ss_pred             cEEEEEECCCHHHHHHHHHHHhC--CCceEEEEecCCChH---HHHHhhhcCceeecccccceeeecccCccccchhhhh
Confidence            59999999999999999999877  899999999988762   223333444431                012244455


Q ss_pred             hhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecC
Q 017143           70 LDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKP  108 (376)
Q Consensus        70 l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP  108 (376)
                      ++  ++|+|+=||+.....+.+..-+++| -|.|++--|
T Consensus        77 ~~--~vDvViEcTG~f~~~~~~~~hl~~G-~k~Vi~s~~  112 (172)
T d2czca2          77 LE--KVDIIVDATPGGIGAKNKPLYEKAG-VKAIFQGGE  112 (172)
T ss_dssp             HT--TCSEEEECCSTTHHHHHHHHHHHHT-CEEEECTTS
T ss_pred             hc--cCCEEEECCCCCCCHHHHHHHHHcC-CCEEEECCC
Confidence            44  4999999999999999999999954 245554443

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.62  E-value=1.1e-07  Score=75.02  Aligned_cols=106  Identities=16%  Similarity=0.171  Sum_probs=80.3

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      |||||||+|.||..+...|.+.   +++++ ++++++.+.  ....++..+    ..++.+++..+  .|+|++|+|++.
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~---g~~v~-~~~~~~~~~--~~~~~~~~~----~~~~~~e~~~~--~diIi~~v~~~~   68 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSR---GVEVV-TSLEGRSPS--TIERARTVG----VTETSEEDVYS--CPVVISAVTPGV   68 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHT---TCEEE-ECCTTCCHH--HHHHHHHHT----CEECCHHHHHT--SSEEEECSCGGG
T ss_pred             CEEEEEcHHHHHHHHHHHHHHC---CCeEE-EEcCchhHH--HHHhhhccc----ccccHHHHHhh--cCeEEEEecCch
Confidence            6899999999999999999885   78876 466666532  333344334    44678899887  899999999999


Q ss_pred             cHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCC
Q 017143           87 HYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPD  128 (376)
Q Consensus        87 h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~  128 (376)
                      ..+.+.++..  .-.+++++=- +.+++..++|.+.+ ++.+
T Consensus        69 ~~~~~~~~~~--~~~~~~id~s-t~~p~~~~~l~~~~-~~~~  106 (152)
T d1i36a2          69 ALGAARRAGR--HVRGIYVDIN-NISPETVRMASSLI-EKGG  106 (152)
T ss_dssp             HHHHHHHHHT--TCCSEEEECS-CCCHHHHHHHHHHC-SSSE
T ss_pred             HHHHHHhhcc--cCCceeeccC-cCCHHHHHHHHHHH-hccC
Confidence            9999988887  5567777742 45778888888888 5433

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.60  E-value=4.3e-07  Score=72.16  Aligned_cols=111  Identities=21%  Similarity=0.357  Sum_probs=82.6

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      |||||||+|.||...+..|.+.   +++|+ ++|++++   +++++.+ .+.  ...++.++++++  .|+|++|.|+..
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~---G~~V~-~~d~~~~---~~~~~~~-~~~--~~~~~~~e~~~~--~d~ii~~v~~~~   68 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKA---GYSLV-VSDRNPE---AIADVIA-AGA--ETASTAKAIAEQ--CDVIITMLPNSP   68 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT---TCEEE-EECSCHH---HHHHHHH-TTC--EECSSHHHHHHH--CSEEEECCSSHH
T ss_pred             CEEEEEehhHHHHHHHHHHHHC---CCeEE-EEeCCcc---hhHHHHH-hhh--hhcccHHHHHhC--CCeEEEEcCCHH
Confidence            6899999999999999888874   88876 7999988   4555554 343  477899999988  899999999876


Q ss_pred             cHHHHH-------HHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 017143           87 HYQILM-------DIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVG  134 (376)
Q Consensus        87 h~~~~~-------~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~  134 (376)
                      ..+-+.       ..++  .| .++++=. +.+++..+++.+.++ ..++.+.-+
T Consensus        69 ~v~~v~~~~~~~~~~~~--~g-~iiid~s-T~~p~~~~~~~~~~~-~~g~~~vda  118 (161)
T d1vpda2          69 HVKEVALGENGIIEGAK--PG-TVLIDMS-SIAPLASREISDALK-AKGVEMLDA  118 (161)
T ss_dssp             HHHHHHHSTTCHHHHCC--TT-CEEEECS-CCCHHHHHHHHHHHH-TTTCEEEEC
T ss_pred             HHHHHHhCCcchhhccC--CC-CEEEECC-CCCHHHHHHHHHHHH-HcCCceecc
Confidence            665543       2233  33 4666643 568899999999994 446655544

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.47  E-value=2.1e-07  Score=74.42  Aligned_cols=144  Identities=12%  Similarity=0.079  Sum_probs=92.8

Q ss_pred             CCCceeEEEEeCChhhHHHHHHhhhhc-CCCcEEEEEeCCChhhH----------HHHHHHHHhcCCCCCccCCHHHHhh
Q 017143            3 ANDTVKYGIIGMGMMGREHFINLHHLR-SQGVSVVCIADPHLQSR----------QQALKLANAFDWPLKVFPGHQELLD   71 (376)
Q Consensus         3 ~~~~~~v~iiG~G~~g~~~~~~~~~~~-~~~~~~~~v~d~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~   71 (376)
                      ++++++|+|+|+|.+|+..+..+.+.+ .-.++++++++.+..-.          ...++.......+....+++.+.+.
T Consensus         1 s~k~i~I~l~G~G~VG~~l~~~l~~~~~~l~~~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (168)
T d1ebfa1           1 STKVVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLK   80 (168)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHHT
T ss_pred             CCCEEEEEEEeCCHHHHHHHHHHHHhHHHhhhheEEEEEeeeeeecccccchHhhhhhhhhhhhcccccccHHHHHHHhc
Confidence            357899999999999999888777653 23578888887532200          0001111111211011112222222


Q ss_pred             -CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEE--ecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHH
Q 017143           72 -SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLV--EKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQ  148 (376)
Q Consensus        72 -~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~--EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~  148 (376)
                       .+.+|+++.+|....-..+..+||+  +|+||..  =||++...++.++|.+++ ++++...+.+-..=--|....++.
T Consensus        81 ~~~~~~vivd~t~~~~~~~~~~~aL~--~G~hVVTANK~~la~~~~~~~~L~~~a-~~~~~~~yEatVgaGiPiI~~l~~  157 (168)
T d1ebfa1          81 TSPKPVILVDNTSSAYIAGFYTKFVE--NGISIATPNKKAFSSDLATWKALFSNK-PTNGFVYHEATVGAGLAAVTAAGV  157 (168)
T ss_dssp             TCSSCEEEEECSCCHHHHTTHHHHHH--TTCEEECCCCGGGSSCHHHHHHHTCCC-TTCCCEECGGGTTTTSHHHHHHHH
T ss_pred             cCCCceEEEEecCChHHHHHHHHHHH--cCCeEEecCcccccCCHHHHHHHHHHH-HHCCcEEEeCeeeechhHHHHHHH
Confidence             4557788888887766777889999  9999988  569999999999998877 555544344444455788777776


Q ss_pred             H
Q 017143          149 I  149 (376)
Q Consensus       149 ~  149 (376)
                      +
T Consensus       158 l  158 (168)
T d1ebfa1         158 L  158 (168)
T ss_dssp             H
T ss_pred             c
Confidence            5

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.45  E-value=8.5e-08  Score=76.03  Aligned_cols=125  Identities=17%  Similarity=0.139  Sum_probs=91.9

Q ss_pred             CCceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcC---CCCCccCCHHHHhhCCCCCEEE
Q 017143            4 NDTVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFD---WPLKVFPGHQELLDSGLCDVVV   79 (376)
Q Consensus         4 ~~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~D~V~   79 (376)
                      .++|||+|+|+ |.||+..+..+...  ++++|++.+++..... ..+.+.+-.+   .++..++++++++..  +|+|+
T Consensus         2 ~s~ikI~i~Ga~GrMG~~i~~~i~~~--~~~~lv~~~~~~~~~~-~g~d~~~~~~~~~~~~~~~~~~~~~~~~--~DViI   76 (162)
T d1diha1           2 DANIRVAIAGAGGRMGRQLIQAALAL--EGVQLGAALEREGSSL-LGSDAGELAGAGKTGVTVQSSLDAVKDD--FDVFI   76 (162)
T ss_dssp             CCBEEEEETTTTSHHHHHHHHHHHHS--TTEECCCEECCTTCTT-CSCCTTCSSSSSCCSCCEESCSTTTTTS--CSEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEecccchh-ccchhhhhhccccCCceeeccHHHHhcc--cceEE
Confidence            35899999995 99999988888887  8999999998754310 0011111011   113467788887765  89999


Q ss_pred             EeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeecccc
Q 017143           80 VSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRY  139 (376)
Q Consensus        80 i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~  139 (376)
                      -.|.|..-.+.+..|++  +|+++.+--.. .+.++.++|.+++ ++  +++..+.|+-.
T Consensus        77 DFs~p~~~~~~~~~a~~--~~~~~ViGTTG-~~~~~~~~i~~~a-~~--ipi~~apN~Sl  130 (162)
T d1diha1          77 DFTRPEGTLNHLAFCRQ--HGKGMVIGTTG-FDEAGKQAIRDAA-AD--IAIVFAANFSM  130 (162)
T ss_dssp             ECSCHHHHHHHHHHHHH--TTCEEEECCCC-CCHHHHHHHHHHT-TT--SCEEECSCCCH
T ss_pred             EeccHHHHHHHHHHHHh--ccceeEEecCC-CcHHHHHHHHHHc-CC--CCEEEEccccH
Confidence            99999999999999999  89999998765 6788888888888 43  45555555443

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=98.45  E-value=6.7e-07  Score=71.33  Aligned_cols=95  Identities=17%  Similarity=0.193  Sum_probs=70.7

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC----------------CccCCHHHH
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL----------------KVFPGHQEL   69 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~   69 (376)
                      |+||||.|.|+||+..++++...  +++++++|.|+++..   .....-+++++.                ....++.++
T Consensus         1 M~~VgINGfGRIGR~v~R~l~~~--~di~vvaInd~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~   75 (171)
T d1cf2o1           1 MKAVAINGYGTVGKRVADAIAQQ--DDMKVIGVSKTRPDF---EARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDM   75 (171)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTS--SSEEEEEEEESSCSH---HHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHH
T ss_pred             CeEEEEEcCcHHHHHHHHHHHhC--CCceEEEEecCCcHH---HHHHHHhcCCceEecccccceeecccCcccCCChhHh
Confidence            57999999999999999988777  899999999988752   222233444331                011244555


Q ss_pred             hhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCC
Q 017143           70 LDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPL  109 (376)
Q Consensus        70 l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~  109 (376)
                      ++.  +|+|+-|||.....+-+..-++  +|+-+.+--|.
T Consensus        76 ~~~--vDvViEcTG~f~~~~~~~~hl~--~G~K~vi~~~~  111 (171)
T d1cf2o1          76 LDE--ADIVIDCTPEGIGAKNLKMYKE--KGIKAIFQGGE  111 (171)
T ss_dssp             HHT--CSEEEECCSTTHHHHHHHHHHH--TTCEEEECTTS
T ss_pred             hcC--CCEEEEccCCCCCHHHHHHHHH--cCCCEEEECCC
Confidence            554  9999999999999999999999  67777775554

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.31  E-value=1.4e-05  Score=60.73  Aligned_cols=115  Identities=17%  Similarity=0.186  Sum_probs=87.7

Q ss_pred             eEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            8 KYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         8 ~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      ||+|+| .|.||+..+..+.+.  +++++++.+|+...                     ... +.+.++|+|+-.|.|..
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~--~~~~l~~~~d~~~~---------------------~~~-~~~~~~DvvIDFS~p~~   56 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAA--DDLTLSAELDAGDP---------------------LSL-LTDGNTEVVIDFTHPDV   56 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHS--TTSEEEEEECTTCC---------------------THH-HHTTTCSEEEECCCTTT
T ss_pred             CEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEecCCc---------------------hhh-hccccCCEEEEcccHHH
Confidence            899999 599999988888877  89999999986432                     111 22235899999999999


Q ss_pred             cHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHH
Q 017143           87 HYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVK  151 (376)
Q Consensus        87 h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~  151 (376)
                      -.+.+..|++  +|+++.+=-. ..+.++.++|.+.+.+.+++++...  ..|+-.+..+.++++
T Consensus        57 ~~~~~~~~~~--~~~~~ViGTT-G~~~~~~~~l~~~~~~~~~ipil~a--pNfSlGvnll~~l~~  116 (135)
T d1yl7a1          57 VMGNLEFLID--NGIHAVVGTT-GFTAERFQQVESWLVAKPNTSVLIA--PNFTSFVPGVLLAVR  116 (135)
T ss_dssp             HHHHHHHHHH--TTCEEEECCC-CCCHHHHHHHHHHHHSCTTCEEEEC--SCCGGGHHHHHHHHH
T ss_pred             HHHHHHHHHh--cCCCEEEecc-ccchhHHHHHHHHHHhcCCCCEEEc--CCccHHHHHHHHHHH
Confidence            9999999999  8999988444 3578888888886434557665554  556667776777664

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.29  E-value=2.2e-06  Score=67.60  Aligned_cols=94  Identities=21%  Similarity=0.296  Sum_probs=72.9

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      +..+|.|||+|.+|...+..|...   +++-+-|+.|+.+   +++++++++|.....|+++.+.+.+  .|+|+.||+.
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~---g~~~i~v~nRt~~---ka~~l~~~~~~~~~~~~~~~~~l~~--~Divi~atss   94 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDR---GVRAVLVANRTYE---RAVELARDLGGEAVRFDELVDHLAR--SDVVVSATAA   94 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHH---CCSEEEEECSSHH---HHHHHHHHHTCEECCGGGHHHHHHT--CSEEEECCSS
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhc---CCcEEEEEcCcHH---HHHHHHHhhhcccccchhHHHHhcc--CCEEEEecCC
Confidence            457999999999999888888886   6666668999887   7889999988655567888888876  8999999985


Q ss_pred             C---ccHHHHHHHHcCC-CCCe-EEEe
Q 017143           85 M---THYQILMDIINHP-KPHH-VLVE  106 (376)
Q Consensus        85 ~---~h~~~~~~al~~~-~g~~-Vl~E  106 (376)
                      .   .+.+.+..+++.- .+++ ++++
T Consensus        95 ~~~ii~~~~i~~~~~~r~~~~~~~iiD  121 (159)
T d1gpja2          95 PHPVIHVDDVREALRKRDRRSPILIID  121 (159)
T ss_dssp             SSCCBCHHHHHHHHHHCSSCCCEEEEE
T ss_pred             CCccccHhhhHHHHHhcccCCCeEEEe
Confidence            3   6788888776410 2344 6666

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.29  E-value=1.3e-05  Score=63.29  Aligned_cols=112  Identities=21%  Similarity=0.226  Sum_probs=82.2

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT   86 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~   86 (376)
                      .||||||+|.||...+..|.+.   +++|. ++|++++   +.+.+.. .+.  ....+..+++..  .|+|++|.|+..
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~---g~~v~-~~d~~~~---~~~~~~~-~~~--~~~~~~~e~~~~--~diii~~v~~~~   69 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKA---GYLLN-VFDLVQS---AVDGLVA-AGA--SAARSARDAVQG--ADVVISMLPASQ   69 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT---TCEEE-EECSSHH---HHHHHHH-TTC--EECSSHHHHHTS--CSEEEECCSCHH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHC---CCeEE-EEECchh---hhhhhhh-hhc--cccchhhhhccc--cCeeeecccchh
Confidence            4799999999999999888885   78865 7999987   4444433 343  366889999987  899999999876


Q ss_pred             cHHHHH-------HHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEee
Q 017143           87 HYQILM-------DIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGL  135 (376)
Q Consensus        87 h~~~~~-------~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~  135 (376)
                      ....+.       ..+.  .| .++++-. +.+++..+++.+.++++ |+.+.-+.
T Consensus        70 ~~~~v~~~~~~~~~~l~--~g-~iiid~s-t~~p~~~~~~~~~~~~~-gi~~~dap  120 (162)
T d3cuma2          70 HVEGLYLDDDGLLAHIA--PG-TLVLECS-TIAPTSARKIHAAARER-GLAMLDAP  120 (162)
T ss_dssp             HHHHHHHSTTCHHHHSC--TT-CEEEECS-CCCHHHHHHHHHHHHHT-TCEEEECC
T ss_pred             hHHHHHhccccccccCC--CC-CEEEECC-CCCHHHHHHHHHHHHHC-CCcEEecc
Confidence            555443       2244  34 4666655 56899999999999555 76666543

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.27  E-value=7.6e-06  Score=65.95  Aligned_cols=120  Identities=17%  Similarity=0.235  Sum_probs=76.4

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH--hc-------CCCCCccCCHHHHhhCCCCCE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN--AF-------DWPLKVFPGHQELLDSGLCDV   77 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~--~~-------~~~~~~~~~~~~~l~~~~~D~   77 (376)
                      .||+|||+|.+|..+...|.+.   +.+|. ++++++++.+...+...  .+       ..+...+++.++.+.+  .|+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~---G~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--aD~   75 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALK---GQSVL-AWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKD--ADV   75 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCEEE-EECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTT--CSE
T ss_pred             CEEEEECccHHHHHHHHHHHHC---CCEEE-EEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcC--CCE
Confidence            4899999999999988888885   77766 78999885443332210  00       0111345788999987  899


Q ss_pred             EEEeCCCCccHHHHHHHHcCC-CCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 017143           78 VVVSTPNMTHYQILMDIINHP-KPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQV  133 (376)
Q Consensus        78 V~i~t~~~~h~~~~~~al~~~-~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v  133 (376)
                      |++++|...|...+.+....- .+..|++-+=......+..++.... ....+.+..
T Consensus        76 iii~v~~~~~~~~~~~i~~~l~~~~~iv~~~g~~~~~~~~~~~~~~~-~~~~~~~~~  131 (184)
T d1bg6a2          76 ILIVVPAIHHASIAANIASYISEGQLIILNPGATGGALEFRKILREN-GAPEVTIGE  131 (184)
T ss_dssp             EEECSCGGGHHHHHHHHGGGCCTTCEEEESSCCSSHHHHHHHHHHHT-TCCCCEEEE
T ss_pred             EEEEEchhHHHHHHHHhhhccCCCCEEEEeCCCCccHHHHHHHHHHh-cCCCceEEE
Confidence            999999999988877654311 4555554433334444444444444 333444443

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.23  E-value=3.8e-06  Score=67.48  Aligned_cols=115  Identities=19%  Similarity=0.228  Sum_probs=83.3

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC------CccCCHHHHhhCCCCCEEEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL------KVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~D~V~i   80 (376)
                      -+|.|||+|.+|...+..|.+.   +.+|+ |+||+.+   ++++++++++...      ......++.+..  .|.++.
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~---g~~V~-v~dr~~~---~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~i~   73 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDS---GIKVT-VACRTLE---SAKKLSAGVQHSTPISLDVNDDAALDAEVAK--HDLVIS   73 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTT---TCEEE-EEESCHH---HHHHHHTTCTTEEEEECCTTCHHHHHHHHTT--SSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhC---CCEEE-EEECChH---HHHHHHhcccccccccccccchhhhHhhhhc--cceeEe
Confidence            4899999999999999888775   77865 8999998   7888888765321      011123444544  799999


Q ss_pred             eCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeec
Q 017143           81 STPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLE  136 (376)
Q Consensus        81 ~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~  136 (376)
                      ++|...+...+..+++  .+.|++...   ....+..++.+.+.+. +..++....
T Consensus        74 ~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~l~~~~~~~-~~~~~~~~~  123 (182)
T d1e5qa1          74 LIPYTFHATVIKSAIR--QKKHVVTTS---YVSPAMMELDQAAKDA-GITVMNEIG  123 (182)
T ss_dssp             CSCGGGHHHHHHHHHH--HTCEEECSS---CCCHHHHHTHHHHHHT-TCEEECSCB
T ss_pred             eccchhhhHHHHHHHh--hccceeecc---cCcHHHHHHHHHhccc-cceeehhhh
Confidence            9999999999999999  788887644   3345667778888444 655554433

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=98.16  E-value=3.9e-07  Score=71.71  Aligned_cols=71  Identities=17%  Similarity=0.185  Sum_probs=50.3

Q ss_pred             EEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCccH
Q 017143            9 YGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMTHY   88 (376)
Q Consensus         9 v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~h~   88 (376)
                      ||+||+|.||+..+..|.+    ..++..|++|+++   ++++++++++.   .+.+.+++++.  .|+|++|+|++.-.
T Consensus         2 IgfIG~G~mg~~l~~~L~~----~~~~~~v~~R~~~---~~~~l~~~~~~---~~~~~~~~~~~--~DiVil~v~d~~i~   69 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKD----RYEIGYILSRSID---RARNLAEVYGG---KAATLEKHPEL--NGVVFVIVPDRYIK   69 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC--------CCCEECSSHH---HHHHHHHHTCC---CCCSSCCCCC-----CEEECSCTTTHH
T ss_pred             EEEEeCcHHHHHHHHHHHh----CCCEEEEEeCChh---hhcchhhcccc---cccchhhhhcc--CcEEEEeccchhhh
Confidence            6999999999998877643    4566678999988   67888888774   34567777766  79999999987544


Q ss_pred             HHH
Q 017143           89 QIL   91 (376)
Q Consensus        89 ~~~   91 (376)
                      +++
T Consensus        70 ~v~   72 (153)
T d2i76a2          70 TVA   72 (153)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.13  E-value=8.2e-06  Score=59.48  Aligned_cols=112  Identities=13%  Similarity=0.181  Sum_probs=91.2

Q ss_pred             CceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143            5 DTVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         5 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      +.-||.+-|. |..|..|.+.+...   +.+++|-+.+...    .++   -.|+|  +|++.+|+.+..++|+-+|..|
T Consensus         6 k~trVivQGiTG~~G~~ht~~m~~y---GT~iVaGVtPgkg----G~~---~~giP--Vf~tV~eAv~~~~~d~SvIfVP   73 (121)
T d1oi7a1           6 RETRVLVQGITGREGQFHTKQMLTY---GTKIVAGVTPGKG----GME---VLGVP--VYDTVKEAVAHHEVDASIIFVP   73 (121)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHH---TCEEEEEECTTCT----TCE---ETTEE--EESSHHHHHHHSCCSEEEECCC
T ss_pred             CCCcEEEEcCCCcHHHHHHHHHHHh---CCceEeeeecCCC----CcE---EECCc--hHhhHHHHHHhcCCeEEEEeeC
Confidence            4468999995 99999999999887   7889988887654    111   24777  9999999999989999999999


Q ss_pred             CCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEE
Q 017143           84 NMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILV  131 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~  131 (376)
                      +..-.+-+++|++  +|...++=-.=...+.|..++.+.++++ +..+
T Consensus        74 p~~a~dAi~EAi~--agI~liv~ITEgVPv~Dm~~i~~~~~~~-~~~l  118 (121)
T d1oi7a1          74 APAAADAALEAAH--AGIPLIVLITEGIPTLDMVRAVEEIKAL-GSRL  118 (121)
T ss_dssp             HHHHHHHHHHHHH--TTCSEEEECCSCCCHHHHHHHHHHHHHH-TCEE
T ss_pred             HHHHHHHHHHHHh--CCCcEEEEecCCCCHHHHHHHHHHHHhC-CCEE
Confidence            9999999999999  7788766555566788888999998554 6554

>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Escherichia coli [TaxId: 562]

Probab=98.10  E-value=1.1e-05  Score=58.60  Aligned_cols=112  Identities=15%  Similarity=0.138  Sum_probs=91.0

Q ss_pred             CceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143            5 DTVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         5 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      +.-||.+-|. |..|..|...+...   +.+++|-+.+...    .+   .-.|+|  +|++.+|+.+...+|+-+|..|
T Consensus         5 k~trVlvQGiTG~~G~~ht~~m~~y---GT~vVaGVtPgkg----G~---~~~giP--Vf~sV~eAv~~~~~~~SvIfVP   72 (119)
T d2nu7a1           5 KNTKVICQGFTGSQGTFHSEQAIAY---GTKMVGGVTPGKG----GT---THLGLP--VFNTVREAVAATGATASVIYVP   72 (119)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHH---TCEEEEEECTTCT----TE---EETTEE--EESSHHHHHHHHCCCEEEECCC
T ss_pred             CCCcEEEEcCCCcHHHHHHHHHHHh---CCceEEEEccCCC----Cc---ccCCCc--hhhHHHHHHHHhCCCeEEEecc
Confidence            4579999995 99999999998887   8889988877553    11   135777  9999999999988999999999


Q ss_pred             CCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEE
Q 017143           84 NMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILV  131 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~  131 (376)
                      +..-.+-+++|++  +|...++=-.=...+.|..++.+.+++ ++..+
T Consensus        73 p~~a~dA~~EAi~--agI~~iV~ITEgIP~~D~~~i~~~~~~-~~~~l  117 (119)
T d2nu7a1          73 APFCKDSILEAID--AGIKLIITITEGIPTLDMLTVKVKLDE-AGVRM  117 (119)
T ss_dssp             GGGHHHHHHHHHH--TTCSEEEECCCCCCHHHHHHHHHHHHH-HTCEE
T ss_pred             HHHHHHHHHHHHH--CCCCEEEEecCCCCHHHHHHHHHHHhh-CCCEE
Confidence            9999999999999  778876655555678888899999844 46544

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.09  E-value=1.1e-06  Score=66.48  Aligned_cols=98  Identities=9%  Similarity=0.023  Sum_probs=73.6

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      +++|++|+|+|..|+..+..+...  .+++++|++|-++.+..  +   .-.|+++...+.++++..+ .+++++++.|.
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~--~~~~iv~fiDdd~~k~G--~---~I~Gi~V~~~~~l~~~~~~-~i~iai~~i~~   73 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFG--ESFELRGFFDVDPEKVG--R---PVRGGVIEHVDLLPQRVPG-RIEIALLTVPR   73 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCC--SSEEEEEEEESCTTTTT--C---EETTEEEEEGGGHHHHSTT-TCCEEEECSCH
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhc--CCcEEEEEEeCchHhcC--C---EECCEEEecHHHHHHHHhh-cccEEEEeCCH
Confidence            578999999999999887766555  79999999999887321  1   1136663344667777765 58999999999


Q ss_pred             CccHHHHHHHHcCCCCCe-EEEecCCCCC
Q 017143           85 MTHYQILMDIINHPKPHH-VLVEKPLCTT  112 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~~-Vl~EKP~a~~  112 (376)
                      ..+.+++..+++  .|.. ++.-.|...+
T Consensus        74 ~~~~~I~d~l~~--~gIk~I~~f~~~~l~  100 (126)
T d2dt5a2          74 EAAQKAADLLVA--AGIKGILNFAPVVLE  100 (126)
T ss_dssp             HHHHHHHHHHHH--HTCCEEEECSSSCCC
T ss_pred             HHHHHHHHHHHH--cCCCEEeecCceeec
Confidence            999999999999  6655 5444565544

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.07  E-value=3e-06  Score=68.49  Aligned_cols=100  Identities=14%  Similarity=0.138  Sum_probs=65.2

Q ss_pred             CCCceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH-hcCCCCCccCCH-HHHhhCCCCCEEE
Q 017143            3 ANDTVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN-AFDWPLKVFPGH-QELLDSGLCDVVV   79 (376)
Q Consensus         3 ~~~~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~l~~~~~D~V~   79 (376)
                      +++++|||||| +|..|...++.|.++  |.++++.++.++.... +..+... ..+.+....... ++.+.  ++|+|+
T Consensus         2 s~~kikVaIlGATGyvG~elirLL~~H--P~~ei~~l~S~~~aG~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Dvvf   76 (183)
T d2cvoa1           2 SGEEVRIAVLGASGYTGAEIVRLLANH--PQFRIKVMTADRKAGE-QFGSVFPHLITQDLPNLVAVKDADFS--NVDAVF   76 (183)
T ss_dssp             CSSCEEEEEESCSSHHHHHHHHHHTTC--SSEEEEEEECSTTTTS-CHHHHCGGGTTSCCCCCBCGGGCCGG--GCSEEE
T ss_pred             CCCccEEEEECcccHHHHHHHHHHHhC--CCceEEEEeccccCCC-ccccccccccccccccchhhhhhhhc--ccceee
Confidence            45789999999 588999999999999  9999999987654321 1111111 112111122222 23333  489999


Q ss_pred             EeCCCCccHHHHHHHHcCCCCCeEEEecCC
Q 017143           80 VSTPNMTHYQILMDIINHPKPHHVLVEKPL  109 (376)
Q Consensus        80 i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~  109 (376)
                      .++|+..-.+++....+  .++.|....-.
T Consensus        77 ~alp~~~s~~~~~~l~~--~~~~v~~~~~~  104 (183)
T d2cvoa1          77 CCLPHGTTQEIIKGLPQ--ELKIVDLSADF  104 (183)
T ss_dssp             ECCSSSHHHHHHHTSCS--SCEEEECSSTT
T ss_pred             eccccchHHHHHHHHHh--cCcccccchhh
Confidence            99999988888876666  56555544333

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=3.1e-05  Score=61.58  Aligned_cols=131  Identities=18%  Similarity=0.151  Sum_probs=87.3

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-C--CccCCHHHHhh------CCCCCE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-L--KVFPGHQELLD------SGLCDV   77 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~l~------~~~~D~   77 (376)
                      =+|.|+|+|.+|...+..++..   +.+-+.++|+++++++    +++++|.+ +  ...++..+..+      ...+|+
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~~---G~~~Vi~~d~~~~rl~----~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dv  100 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKAM---GAAQVVVTDLSATRLS----KAKEIGADLVLQISKESPQEIARKVEGQLGCKPEV  100 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCSEEEEEESCHHHHH----HHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSE
T ss_pred             CEEEEECCCccHHHHHHHHHHc---CCceEEeccCCHHHHH----HHHHhCCcccccccccccccccccccccCCCCceE
Confidence            3799999999999888777665   5644456789888554    44566654 1  11234444333      135899


Q ss_pred             EEEeCCCCccHHHHHHHHcCCCCCeEEEec---CCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCC
Q 017143           78 VVVSTPNMTHYQILMDIINHPKPHHVLVEK---PLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGS  154 (376)
Q Consensus        78 V~i~t~~~~h~~~~~~al~~~~g~~Vl~EK---P~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~  154 (376)
                      |+-++....-.+.+..+++.+ |+-|++--   |...+.      .... .+ ++.+.-.  ++|...+..+-+++++|+
T Consensus       101 vid~~G~~~~~~~a~~~~~~g-G~iv~~G~~~~~~~~~~------~~~~-~k-~l~i~Gs--~~~~~~~~~al~li~~gk  169 (171)
T d1pl8a2         101 TIECTGAEASIQAGIYATRSG-GTLVLVGLGSEMTTVPL------LHAA-IR-EVDIKGV--FRYCNTWPVAISMLASKS  169 (171)
T ss_dssp             EEECSCCHHHHHHHHHHSCTT-CEEEECSCCCSCCCCCH------HHHH-HT-TCEEEEC--CSCSSCHHHHHHHHHTTS
T ss_pred             EEeccCCchhHHHHHHHhcCC-CEEEEEecCCCCCccCH------HHHH-HC-CcEEEEE--eCCHhHHHHHHHHHHcCC
Confidence            999999998899999999853 65666543   444443      3333 33 5555533  456667889999999987


Q ss_pred             C
Q 017143          155 I  155 (376)
Q Consensus       155 i  155 (376)
                      |
T Consensus       170 i  170 (171)
T d1pl8a2         170 V  170 (171)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.98  E-value=4.9e-05  Score=60.71  Aligned_cols=120  Identities=9%  Similarity=0.136  Sum_probs=81.9

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC--CCccCCHHHHhhC-CCCCEEEEeC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP--LKVFPGHQELLDS-GLCDVVVVST   82 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~-~~~D~V~i~t   82 (376)
                      +-+|||||+|.||...+..|.+.   +++|+ +||++++   +++++.++....  .....+.+++.+. .+.|.++++.
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~---G~~V~-v~dr~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~   74 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDH---GFVVC-AFNRTVS---KVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLV   74 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHT---TCCEE-EECSSTH---HHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECS
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHC---CCeEE-EEcCCHH---HHHHHHHhccccccccchhhhhhhhhhhcccceEEEec
Confidence            35799999999999999999885   88875 7999998   555665442211  1234455555542 3479999999


Q ss_pred             CCCccHHHHHH----HHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeecc
Q 017143           83 PNMTHYQILMD----IINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEY  137 (376)
Q Consensus        83 ~~~~h~~~~~~----al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~  137 (376)
                      ++.....-+..    .++  .| .++++- -+.++.+.+++.+.+.++ ++.+.-....
T Consensus        75 ~~~~~v~~v~~~l~~~~~--~g-~iiid~-sT~~~~~~~~~~~~~~~~-g~~~ldapvs  128 (176)
T d2pgda2          75 KAGQAVDNFIEKLVPLLD--IG-DIIIDG-GNSEYRDTMRRCRDLKDK-GILFVGSGVS  128 (176)
T ss_dssp             CTTHHHHHHHHHHHHHCC--TT-CEEEEC-SCCCHHHHHHHHHHHHHT-TCEEEEEEEE
T ss_pred             CchHHHHHHHHHHHhccc--cC-cEEEec-CcchhHHHHHHHHHHHhc-CCceeccccc
Confidence            98766444333    334  44 366665 367899999999999555 7666655444

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.97  E-value=5.8e-05  Score=58.98  Aligned_cols=115  Identities=13%  Similarity=0.138  Sum_probs=76.2

Q ss_pred             eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCcc
Q 017143            8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMTH   87 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~h   87 (376)
                      |||+||+|.||...+..|.+.   +..+  +++++.+   ++.++.++.+..   .... +.+.+  .|.++++.|+...
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~---g~~~--~~~~~~~---~~~~~~~~~~~~---~~~~-~~~~~--~~~~i~~~~~~~~   67 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARR---FPTL--VWNRTFE---KALRHQEEFGSE---AVPL-ERVAE--ARVIFTCLPTTRE   67 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTT---SCEE--EECSSTH---HHHHHHHHHCCE---ECCG-GGGGG--CSEEEECCSSHHH
T ss_pred             eEEEEeHHHHHHHHHHHHHhC---CCEE--EEeCCHH---HHHHHHHHcCCc---cccc-ccccc--eeEEEecccchhh
Confidence            799999999999988888764   5544  4566665   455556555532   2333 34443  6999999998766


Q ss_pred             HHHHHHHH-cCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccc
Q 017143           88 YQILMDII-NHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYR  138 (376)
Q Consensus        88 ~~~~~~al-~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r  138 (376)
                      .......+ .......++++-- +.+++.++++.+.++ +.|+.+.-+....
T Consensus        68 v~~~~~~l~~~~~~~~~iid~s-T~~p~~~~~~~~~~~-~~gi~~ldapVsG  117 (156)
T d2cvza2          68 VYEVAEALYPYLREGTYWVDAT-SGEPEASRRLAERLR-EKGVTYLDAPVSG  117 (156)
T ss_dssp             HHHHHHHHTTTCCTTEEEEECS-CCCHHHHHHHHHHHH-TTTEEEEECCEES
T ss_pred             hhhhhccccccccccccccccc-cCCHHHHHHHHHHHH-HcCCeEEeccccC
Confidence            55544433 2112234666543 679999999999994 5587777665554

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.95  E-value=1.4e-05  Score=63.57  Aligned_cols=92  Identities=17%  Similarity=0.112  Sum_probs=59.9

Q ss_pred             eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCcc
Q 017143            8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMTH   87 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~h   87 (376)
                      +|+|||+|.||...+..|.+.. ...+|++ +|++++.++.++    +.++.....++.++... .+.|+|++|+|++..
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g-~~~~I~~-~D~~~~~~~~a~----~~~~~~~~~~~~~~~~~-~~~dlIila~p~~~~   75 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSG-FKGKIYG-YDINPESISKAV----DLGIIDEGTTSIAKVED-FSPDFVMLSSPVRTF   75 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTT-CCSEEEE-ECSCHHHHHHHH----HTTSCSEEESCGGGGGG-TCCSEEEECSCHHHH
T ss_pred             EEEEEccCHHHHHHHHHHHhcC-CCeEEEE-EECChHHHHHHH----Hhhcchhhhhhhhhhhc-cccccccccCCchhh
Confidence            6999999999999999997751 3457665 799987544333    33432134455554443 358999999998876


Q ss_pred             HHHHHHHHcCCCCCeEEEe
Q 017143           88 YQILMDIINHPKPHHVLVE  106 (376)
Q Consensus        88 ~~~~~~al~~~~g~~Vl~E  106 (376)
                      .+++.+....-....++++
T Consensus        76 ~~vl~~l~~~~~~~~ii~d   94 (171)
T d2g5ca2          76 REIAKKLSYILSEDATVTD   94 (171)
T ss_dssp             HHHHHHHHHHSCTTCEEEE
T ss_pred             hhhhhhhhccccccccccc
Confidence            6666554321123356665

>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.95  E-value=3.1e-05  Score=57.00  Aligned_cols=112  Identities=16%  Similarity=0.113  Sum_probs=90.4

Q ss_pred             CceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143            5 DTVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         5 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      +.-||.+-|. |..|..|...+.+.   +.+++|-+.+...    .+.   -.|+|  +|++.+|+.+...+|+-+|..|
T Consensus        14 k~TrVivQGiTG~~G~~ht~~m~~Y---GT~iVaGVtPgKg----G~~---~~giP--Vf~tV~eA~~~~~~daSvIfVP   81 (130)
T d1euca1          14 KNTKVICQGFTGKQGTFHSQQALEY---GTNLVGGTTPGKG----GKT---HLGLP--VFNTVKEAKEQTGATASVIYVP   81 (130)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHH---TCEEEEEECTTCT----TCE---ETTEE--EESSHHHHHHHHCCCEEEECCC
T ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHh---cCCeEEeeccCCC----Ccc---ccCcc--chhhHHHHHHhcCCcEEEEecC
Confidence            3569999996 99999999999988   7889988887654    111   24777  9999999999878999999999


Q ss_pred             CCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeE
Q 017143           84 NMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDIL  130 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~  130 (376)
                      +..-.+-+++|++  +|..+++=-.=...+.|..++.+.+.++++..
T Consensus        82 p~~a~dAi~EAi~--agI~liV~ITEgIPv~Dm~~i~~~~~~~~~~~  126 (130)
T d1euca1          82 PPFAAAAINEAID--AEVPLVVCITEGIPQQDMVRVKHRLLRQGKTR  126 (130)
T ss_dssp             HHHHHHHHHHHHH--TTCSEEEECCCCCCHHHHHHHHHHHTTCSSCE
T ss_pred             HHHHHHHHHHHHh--CCCCEEEEecCCCCHHHHHHHHHHHHhCCCcE
Confidence            9999999999999  78887765555667888888887663554443

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.94  E-value=0.00011  Score=58.61  Aligned_cols=117  Identities=15%  Similarity=0.200  Sum_probs=78.4

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-----CCccCCHHHHhhC-CCCCEEEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-----LKVFPGHQELLDS-GLCDVVVV   80 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~-~~~D~V~i   80 (376)
                      |||||||+|.||...+..|.+.   +++|. +||++++   +++++.++....     .....+.++++.. .+.+.+.+
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~---G~~V~-~~dr~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEK---GFKVA-VFNRTYS---KSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALI   74 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT---TCCEE-EECSSHH---HHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEE
T ss_pred             CEEEEEeehHHHHHHHHHHHHC---CCeEE-EEECCHH---HHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEE
Confidence            6899999999999998888875   78865 7999998   566666654422     1234556666653 44678888


Q ss_pred             eCCCCccHHH----HHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEee
Q 017143           81 STPNMTHYQI----LMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGL  135 (376)
Q Consensus        81 ~t~~~~h~~~----~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~  135 (376)
                      +.++..-..-    ....+.  .| .++++-- +.+.+..+++.+.+. ..+..+.-+.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~--~~-~iii~~s-t~~~~~~~~~~~~l~-~~~~~~ldap  128 (178)
T d1pgja2          75 LVQAGAATDSTIEQLKKVFE--KG-DILVDTG-NAHFKDQGRRAQQLE-AAGLRFLGMG  128 (178)
T ss_dssp             CCCCSHHHHHHHHHHHHHCC--TT-CEEEECC-CCCHHHHHHHHHHHH-TTTCEEEEEE
T ss_pred             eecCcchhhhhhhhhhhhcc--cc-ceecccC-ccchhHHHHHHHHHh-hcceeEeccc
Confidence            8887654432    223345  44 3555533 568888999999884 4466555443

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=97.93  E-value=1.1e-05  Score=65.40  Aligned_cols=81  Identities=10%  Similarity=0.116  Sum_probs=58.8

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh-----c----CCC--CCccCCHHHHhhC
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA-----F----DWP--LKVFPGHQELLDS   72 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~-----~----~~~--~~~~~~~~~~l~~   72 (376)
                      |.|-||+|||+|.||......+.+.   +-+|. +++++++.   ++.+.+.     |    .++  +...+++++++++
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La~~---g~~V~-l~~r~~~~---~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~   77 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLSKK---CREVC-VWHMNEEE---VRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNG   77 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHTT---EEEEE-EECSCHHH---HHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTT
T ss_pred             ceeceEEEECCCHHHHHHHHHHHHc---CCeEE-EEEecHHH---HHHHhhcccccccccccccccccccchhhhhccCC
Confidence            3456899999999999877777664   45644 78999884   4444332     1    122  3456789999987


Q ss_pred             CCCCEEEEeCCCCccHHHHHH
Q 017143           73 GLCDVVVVSTPNMTHYQILMD   93 (376)
Q Consensus        73 ~~~D~V~i~t~~~~h~~~~~~   93 (376)
                        .|+|++++|.+...+.+.+
T Consensus        78 --ad~iiiavPs~~~~~~~~~   96 (189)
T d1n1ea2          78 --AEIILFVIPTQFLRGFFEK   96 (189)
T ss_dssp             --CSCEEECSCHHHHHHHHHH
T ss_pred             --CCEEEEcCcHHHHHHHHHH
Confidence              7999999998887777655

>d1tlta2 d.81.1.5 (A:128-267) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: Glucose 6-phosphate dehydrogenase-like
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=97.87  E-value=5.3e-05  Score=57.29  Aligned_cols=115  Identities=13%  Similarity=0.122  Sum_probs=72.7

Q ss_pred             CHHHHHHHHHHHcCCCCceEEEEEeeccCCcccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccc
Q 017143          140 MPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVN  219 (376)
Q Consensus       140 ~p~~~~~k~~i~~g~iG~i~~~~~~~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~  219 (376)
                      +|.|+++|+     .++++.++....++..... |.+-+       -.++|..||.+|.++||.|.+...+.+...... 
T Consensus         1 AP~Y~~lk~-----~~~~~~~i~~eKnR~n~~~-P~d~r-------~~l~DDfIHvvDT~~~L~~~~~~~~~~~~~~~~-   66 (140)
T d1tlta2           1 APLYGELKT-----QLATAASLRMDKHRSNSVG-PHDLY-------FTLLDDYLHVVDTALWLSGGKASLDGGTLLTND-   66 (140)
T ss_dssp             CHHHHHHTT-----TGGGCCEEEEEECCSSCCC-SSCHH-------HHHHHTHHHHHHHHHHHTTTCCCEEEEEEEECT-
T ss_pred             CchHHHHHh-----hcCCCcEEEEEecccCCCC-CCcce-------eeehhhhhHHHHHHHHhcCCCceeeeEEEEEcC-
Confidence            478888766     4567777777666643211 01111       148999999999999999966655655433211 


Q ss_pred             cCccccCCCCCcccccEEEEEEecCCcEEEEEEEEeecCCCCceEEEEEecCCeeeeecccc
Q 017143          220 HKDEMYNGKVPDIIDNAYVIVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPES  281 (376)
Q Consensus       220 ~~~~~~~~~~~~~~d~~~~~l~~~~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~  281 (376)
                                  -.....+.+.|..|. ..+..++...++....++++.+.++..++.+-..
T Consensus        67 ------------~g~L~~~~v~~~~~~-~~~~~sMnR~aG~~~E~vev~~~~~~~~v~nl~~  115 (140)
T d1tlta2          67 ------------AGEMLFAEHHFSAGP-LQITTCMHRRAGSQRETVQAVTDGALIDITDMRE  115 (140)
T ss_dssp             ------------TCCEEEEEEEEEETT-EEEEEEEESSSSCCCEEEEEEETTEEEEEETTTE
T ss_pred             ------------CCcEEEEEEEEEECC-EEEEEEEeccCCceeEEEEEEeCCcEEEEEehhe
Confidence                        112334444444433 3344577777777777999999999999876543

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.82  E-value=5.9e-05  Score=60.50  Aligned_cols=83  Identities=16%  Similarity=0.195  Sum_probs=58.3

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc-----CCC-----CCccCCHHHHhhCCCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF-----DWP-----LKVFPGHQELLDSGLCD   76 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~-----~~~-----~~~~~~~~~~l~~~~~D   76 (376)
                      |||+|||+|.||......|.+.   +.+|. ++.|+.+. +..+.+.+..     +..     +..+++.++++++  .|
T Consensus         1 MkI~ViGaG~~GtalA~~la~~---g~~V~-l~~r~~~~-~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--ad   73 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDN---GNEVR-IWGTEFDT-EILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLEN--AE   73 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHH---CCEEE-EECCGGGH-HHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTT--CS
T ss_pred             CEEEEECCCHHHHHHHHHHHHC---CCEEE-EEEecccH-HHHHHHhhhhhhhhhcchhccccccccccHHHHHhc--cc
Confidence            6899999999999888888775   55644 67774432 1344444321     111     1345788888887  89


Q ss_pred             EEEEeCCCCccHHHHHHHHc
Q 017143           77 VVVVSTPNMTHYQILMDIIN   96 (376)
Q Consensus        77 ~V~i~t~~~~h~~~~~~al~   96 (376)
                      +|++++|.+...+.+.+...
T Consensus        74 ~Ii~avps~~~~~~~~~l~~   93 (180)
T d1txga2          74 VVLLGVSTDGVLPVMSRILP   93 (180)
T ss_dssp             EEEECSCGGGHHHHHHHHTT
T ss_pred             hhhcccchhhhHHHHHhhcc
Confidence            99999999988888877644

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.79  E-value=3.5e-05  Score=61.27  Aligned_cols=96  Identities=15%  Similarity=0.248  Sum_probs=62.0

Q ss_pred             ceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh-cCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143            6 TVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA-FDWPLKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         6 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      |+||||||+ |..|...++.|.++  |.++++.++.++.... +..++-.. ++.......+.+++.++  +|+|+.|+|
T Consensus         1 MikVaIvGATGyvG~eLirlL~~H--P~~ei~~l~s~~~aG~-~i~~~~p~~~~~~~~~~~~~~~~~~~--~dvvf~a~p   75 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNH--PEAKITYLSSRTYAGK-KLEEIFPSTLENSILSEFDPEKVSKN--CDVLFTALP   75 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHC--TTEEEEEEECSTTTTS-BHHHHCGGGCCCCBCBCCCHHHHHHH--CSEEEECCS
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhC--CCceEEEeeccccCCC-cccccCchhhccccccccCHhHhccc--cceEEEccc
Confidence            589999995 88999999999999  9999999987655421 11111111 12111223566777665  999999999


Q ss_pred             CCccHHHHHHHHcCCCCCeEEEecCCCC
Q 017143           84 NMTHYQILMDIINHPKPHHVLVEKPLCT  111 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~EKP~a~  111 (376)
                      +..-.+++.+  .  ++. ..++-....
T Consensus        76 ~~~s~~~~~~--~--~~~-~VIDlSadf   98 (176)
T d1vkna1          76 AGASYDLVRE--L--KGV-KIIDLGADF   98 (176)
T ss_dssp             TTHHHHHHTT--C--CSC-EEEESSSTT
T ss_pred             cHHHHHHHHh--h--ccc-eEEecCccc
Confidence            9865555432  2  344 345554444

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.79  E-value=8.4e-06  Score=65.60  Aligned_cols=92  Identities=12%  Similarity=0.168  Sum_probs=61.7

Q ss_pred             ceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc----CCC---CCccCCHHHHhhCCCCCE
Q 017143            6 TVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF----DWP---LKVFPGHQELLDSGLCDV   77 (376)
Q Consensus         6 ~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~l~~~~~D~   77 (376)
                      |+|||||| +|..|...++.|.++  |.+++..++..+.++. ..+.+...+    +..   .....+.+...  .++|+
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~H--P~~ei~~l~~~s~~~~-aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~dv   75 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRH--PHMTITALTVSAQSND-AGKLISDLHPQLKGIVDLPLQPMSDVRDFS--ADVDV   75 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHC--TTEEEEEEEEETTCTT-TTCBHHHHCGGGTTTCCCBEEEESCGGGTC--TTCCE
T ss_pred             CcEEEEECcccHHHHHHHHHHHhC--CCCceEeeEeeccccc-ccccccccccccccccccccccchhhhhhh--cccce
Confidence            68999999 599999999999999  9999999976532210 111121111    111   11122333333  34899


Q ss_pred             EEEeCCCCccHHHHHHHHcCCCCCeEE
Q 017143           78 VVVSTPNMTHYQILMDIINHPKPHHVL  104 (376)
Q Consensus        78 V~i~t~~~~h~~~~~~al~~~~g~~Vl  104 (376)
                      |+.|+|+..-.+.+.++++  .|..|+
T Consensus        76 vf~alp~~~s~~~~~~~~~--~~~~vI  100 (179)
T d2g17a1          76 VFLATAHEVSHDLAPQFLQ--AGCVVF  100 (179)
T ss_dssp             EEECSCHHHHHHHHHHHHH--TTCEEE
T ss_pred             eeccccchhHHHHhhhhhh--cCceee
Confidence            9999999988899999999  666554

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.79  E-value=3.6e-05  Score=56.81  Aligned_cols=100  Identities=16%  Similarity=0.256  Sum_probs=70.9

Q ss_pred             eEEEEeCC----hhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143            8 KYGIIGMG----MMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         8 ~v~iiG~G----~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      +|+|||++    ..|...+..|.+.   +++++.| .+..+         +-+|++  .|.+++++-+.  +|+|+|++|
T Consensus         3 sIAVvGaS~~~~k~g~~v~~~L~~~---g~~V~pV-nP~~~---------~i~G~~--~y~sl~~lp~~--~D~vvi~vp   65 (116)
T d1y81a1           3 KIALVGASKNPAKYGNIILKDLLSK---GFEVLPV-NPNYD---------EIEGLK--CYRSVRELPKD--VDVIVFVVP   65 (116)
T ss_dssp             EEEEETCCSCTTSHHHHHHHHHHHT---TCEEEEE-CTTCS---------EETTEE--CBSSGGGSCTT--CCEEEECSC
T ss_pred             EEEEEcccCCCCCcHHHHHHHHHHC---CCEEEEE-ccccc---------cccCcc--ccccchhcccc--ceEEEEEeC
Confidence            69999974    4677888888775   7888776 33322         124654  99999998775  899999999


Q ss_pred             CCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEE
Q 017143           84 NMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILV  131 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~  131 (376)
                      +..-.+.+.+|++.| -+.|+++ |.+.+.    ++.+.+++ +|+.+
T Consensus        66 ~~~~~~~l~~~~~~g-~k~v~~~-~g~~~~----~~~~~a~~-~gi~v  106 (116)
T d1y81a1          66 PKVGLQVAKEAVEAG-FKKLWFQ-PGAESE----EIRRFLEK-AGVEY  106 (116)
T ss_dssp             HHHHHHHHHHHHHTT-CCEEEEC-TTSCCH----HHHHHHHH-HTCEE
T ss_pred             HHHHHHHHHHHHhcC-CceEEec-cchhhH----HHHHHHHH-cCCEE
Confidence            999999999999943 3445554 665443    45666733 37543

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.69  E-value=9e-06  Score=65.07  Aligned_cols=137  Identities=9%  Similarity=0.048  Sum_probs=81.6

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCc--c--CCHHH-Hhh---CCCCCEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKV--F--PGHQE-LLD---SGLCDVV   78 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~-~l~---~~~~D~V   78 (376)
                      =+|.|+|+|.+|...+..++..   +...+.++|+++++++.+    +++|.. .+  +  +++.+ +.+   ...+|+|
T Consensus        29 ~~VlI~GaG~vGl~~~q~ak~~---Ga~~Vi~~d~~~~r~~~a----~~lGa~-~~i~~~~~~~~~~v~~~t~g~G~D~v  100 (174)
T d1jqba2          29 SSVVVIGIGAVGLMGIAGAKLR---GAGRIIGVGSRPICVEAA----KFYGAT-DILNYKNGHIEDQVMKLTNGKGVDRV  100 (174)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTT---TCSCEEEECCCHHHHHHH----HHHTCS-EEECGGGSCHHHHHHHHTTTSCEEEE
T ss_pred             CEEEEEcCCcchhhhhhhhhcc---cccccccccchhhhHHHH----HhhCcc-ccccccchhHHHHHHHHhhccCcceE
Confidence            4799999999999877777765   664455788988755544    455643 12  1  23333 333   2348999


Q ss_pred             EEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHH-HHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCC
Q 017143           79 VVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKV-VDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGS  154 (376)
Q Consensus        79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l-~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~  154 (376)
                      +.++......+.+.++++. .|+-|++=-|-....-....+ ....  ..++.+.-+......+...++.+++++|+
T Consensus       101 id~~g~~~~~~~a~~~~~~-~G~iv~~G~~~~~~~~~~~~~~~~~~--~~~~~i~g~~~~~~r~~~e~l~~li~~gk  174 (174)
T d1jqba2         101 IMAGGGSETLSQAVKMVKP-GGIISNINYHGSGDALLIPRVEWGCG--MAHKTIKGGLCPGGRLRAERLRDMVVYNR  174 (174)
T ss_dssp             EECSSCTTHHHHHHHHEEE-EEEEEECCCCCSSSEEEEETTTTGGG--TBCCEEEEBCCCCHHHHHHHHHHHHHTTS
T ss_pred             EEccCCHHHHHHHHHHHhc-CCEEEEEeecCCCCcCcCcHhHHHHH--hCccEEEEecCCCCcccHHHHHHHHHcCC
Confidence            9999988888999999884 365566533221111000001 1111  12445555544334455678889998874

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=97.67  E-value=2.1e-05  Score=69.37  Aligned_cols=95  Identities=15%  Similarity=0.233  Sum_probs=71.3

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHH-HHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQA-LKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      ..-+++|||+|..+..|+.++...  -.++-+.|+++++++.++. +++.+..|+++...+|.++++..  .|+|+.||+
T Consensus       127 da~~l~iiG~G~QA~~~~~a~~~v--~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~--ADIi~t~Ta  202 (340)
T d1x7da_         127 NARKMALIGNGAQSEFQALAFHKH--LGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKG--VDIITTVTA  202 (340)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHH--SCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTT--CSEEEECCC
T ss_pred             CCceEEEEcccHHHHHHHHHHhhh--cceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhc--CCceeeccc
Confidence            346899999999999999999888  4688888999999854333 22333447766678999999987  799999997


Q ss_pred             CCccHHHHH-HHHcCCCCCeEEE
Q 017143           84 NMTHYQILM-DIINHPKPHHVLV  105 (376)
Q Consensus        84 ~~~h~~~~~-~al~~~~g~~Vl~  105 (376)
                      .....+++. ..++  .|.||..
T Consensus       203 s~s~~Pv~~~~~l~--pG~hI~a  223 (340)
T d1x7da_         203 DKAYATIITPDMLE--PGMHLNA  223 (340)
T ss_dssp             CSSEEEEECGGGCC--TTCEEEE
T ss_pred             cCCCCcccchhhcC--CCCEEee
Confidence            544333333 3577  8899976

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.66  E-value=1.4e-05  Score=63.84  Aligned_cols=131  Identities=15%  Similarity=0.111  Sum_probs=85.7

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc----CCHHHHhh---CCCCCEEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF----PGHQELLD---SGLCDVVV   79 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~---~~~~D~V~   79 (376)
                      =+|.|+|+|.+|...+..++..   +.+.+.++|+++++++.++    ++|.. .++    +++.+-+.   ...+|+|+
T Consensus        30 ~~VlI~G~G~iG~~~~~~ak~~---g~~~v~~~~~~~~k~~~a~----~~Ga~-~~i~~~~~~~~~~i~~~t~gg~D~vi  101 (174)
T d1f8fa2          30 SSFVTWGAGAVGLSALLAAKVC---GASIIIAVDIVESRLELAK----QLGAT-HVINSKTQDPVAAIKEITDGGVNFAL  101 (174)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHH---TCSEEEEEESCHHHHHHHH----HHTCS-EEEETTTSCHHHHHHHHTTSCEEEEE
T ss_pred             CEEEEeCCCHHHhhhhhccccc---ccceeeeeccHHHHHHHHH----HcCCe-EEEeCCCcCHHHHHHHHcCCCCcEEE
Confidence            4799999999999888777666   6677778899887555444    45544 221    33433322   23589999


Q ss_pred             EeCCCCccHHHHHHHHcCCCCCeEEEecC-----CCCCHHHHHHHHHHHHhCCCeEEEEeeccccC--HHHHHHHHHHHc
Q 017143           80 VSTPNMTHYQILMDIINHPKPHHVLVEKP-----LCTTVADCKKVVDAARKRPDILVQVGLEYRYM--PPVAKLIQIVKS  152 (376)
Q Consensus        80 i~t~~~~h~~~~~~al~~~~g~~Vl~EKP-----~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~--p~~~~~k~~i~~  152 (376)
                      .|+......+.+.++++. .|+.+++=-|     +..+..      +.. .+ ++.+.-.+...+.  ..+..+-+++++
T Consensus       102 d~~G~~~~~~~~~~~~~~-~G~i~~~G~~~~~~~~~~~~~------~~~-~k-~~~i~Gs~~g~~~~~~~~~~~~~l~~~  172 (174)
T d1f8fa2         102 ESTGSPEILKQGVDALGI-LGKIAVVGAPQLGTTAQFDVN------DLL-LG-GKTILGVVEGSGSPKKFIPELVRLYQQ  172 (174)
T ss_dssp             ECSCCHHHHHHHHHTEEE-EEEEEECCCCSTTCCCCCCHH------HHH-HT-TCEEEECSGGGSCHHHHHHHHHHHHHT
T ss_pred             EcCCcHHHHHHHHhcccC-ceEEEEEeecCCCcccccCHH------HHH-HC-CCEEEEEEecCCChHHHHHHHHHHHHc
Confidence            999988888888888875 4777776433     233333      333 33 5555544443443  356778888888


Q ss_pred             CC
Q 017143          153 GS  154 (376)
Q Consensus       153 g~  154 (376)
                      |+
T Consensus       173 Gk  174 (174)
T d1f8fa2         173 GK  174 (174)
T ss_dssp             TS
T ss_pred             CC
Confidence            74

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.58  E-value=0.00048  Score=54.27  Aligned_cols=129  Identities=19%  Similarity=0.250  Sum_probs=82.9

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-C----CccCCHHHHh---hC---CCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-L----KVFPGHQELL---DS---GLC   75 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~l---~~---~~~   75 (376)
                      =+|.|+|+|.+|...+..++..   +.++++ +|+++++++.++    ++|.. .    ....+.++..   .+   ..+
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~~---Ga~vi~-v~~~~~r~~~a~----~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~   99 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKAY---GAFVVC-TARSPRRLEVAK----NCGADVTLVVDPAKEEESSIIERIRSAIGDLP   99 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCEEEE-EESCHHHHHHHH----HTTCSEEEECCTTTSCHHHHHHHHHHHSSSCC
T ss_pred             CEEEEEcccccchhhHhhHhhh---cccccc-cchHHHHHHHHH----HcCCcEEEeccccccccchhhhhhhcccccCC
Confidence            3789999999999877666554   678775 688888655444    44433 0    1122333322   21   358


Q ss_pred             CEEEEeCCCCccHHHHHHHHcCCCCCeEEE---ecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHc
Q 017143           76 DVVVVSTPNMTHYQILMDIINHPKPHHVLV---EKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKS  152 (376)
Q Consensus        76 D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~---EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~  152 (376)
                      |+|+.++......+.+.++++. .|+-|++   .+|...+..+      .. .+ ++.+.-.  +.|...+..+-+++++
T Consensus       100 D~vid~~g~~~~~~~a~~~~~~-~G~iv~~G~~~~~~~~~~~~------~~-~k-~i~i~gs--~~~~~~~~~ai~li~~  168 (170)
T d1e3ja2         100 NVTIDCSGNEKCITIGINITRT-GGTLMLVGMGSQMVTVPLVN------AC-AR-EIDIKSV--FRYCNDYPIALEMVAS  168 (170)
T ss_dssp             SEEEECSCCHHHHHHHHHHSCT-TCEEEECSCCSSCCCCCHHH------HH-TT-TCEEEEC--CSCSSCHHHHHHHHHT
T ss_pred             ceeeecCCChHHHHHHHHHHhc-CCceEEEecCCCCCCcCHHH------HH-HC-CCEEEEE--ECCHHHHHHHHHHHHc
Confidence            9999999988878888888884 3555555   4455555433      33 33 5555533  3555678888899998


Q ss_pred             CC
Q 017143          153 GS  154 (376)
Q Consensus       153 g~  154 (376)
                      |+
T Consensus       169 Gk  170 (170)
T d1e3ja2         169 GR  170 (170)
T ss_dssp             TS
T ss_pred             CC
Confidence            75

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.56  E-value=0.00012  Score=59.88  Aligned_cols=73  Identities=16%  Similarity=0.121  Sum_probs=50.5

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHH-------------HHHhc-CCCCCccCCHHHHhhC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALK-------------LANAF-DWPLKVFPGHQELLDS   72 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~-------------~~~~~-~~~~~~~~~~~~~l~~   72 (376)
                      |||+|||+|.+|..+...+++.   +.+|+ .+|.++++.+...+             +.... +-....++++++.+.+
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~---g~~V~-g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~   76 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSAR---GHEVI-GVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLD   76 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT---TCEEE-EECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHT
T ss_pred             CEEEEECCCHhHHHHHHHHHhC---CCcEE-EEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhh
Confidence            6899999999999888888774   88977 57999874432210             00000 1112356788888877


Q ss_pred             CCCCEEEEeCCCC
Q 017143           73 GLCDVVVVSTPNM   85 (376)
Q Consensus        73 ~~~D~V~i~t~~~   85 (376)
                        .|+++||.|+.
T Consensus        77 --~d~i~i~VpTP   87 (202)
T d1mv8a2          77 --SDVSFICVGTP   87 (202)
T ss_dssp             --CSEEEECCCCC
T ss_pred             --CCEEEEecCcc
Confidence              79999999874

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=97.52  E-value=0.00034  Score=53.68  Aligned_cols=95  Identities=14%  Similarity=0.153  Sum_probs=70.1

Q ss_pred             eeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-----------------------CCc
Q 017143            7 VKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-----------------------LKV   62 (376)
Q Consensus         7 ~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-----------------------~~~   62 (376)
                      -||+|+| +|.+|..-+.-+++++ +.|++++++..+.-  +...+.+.+|...                       +..
T Consensus         2 K~I~IlGsTGSIG~~tL~Vi~~~~-d~f~v~~Lsa~~N~--~~L~~q~~~f~pk~v~i~d~~~~~~l~~~l~~~~~~~~~   78 (151)
T d1q0qa2           2 KQLTILGSTGSIGCSTLDVVRHNP-EHFRVVALVAGKNV--TRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEV   78 (151)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCT-TTEEEEEEEESSCH--HHHHHHHHHHCCSEEEESSHHHHHHHHHHHHHTTCCCEE
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhCC-CCcEEEEEEecCcH--HHHHHHHHHHhhcccccccHHHHHHHHHHhhhhcccccc
Confidence            4799999 6999999998888873 57999999865432  2444444444422                       112


Q ss_pred             c---CCHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEe
Q 017143           63 F---PGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVE  106 (376)
Q Consensus        63 ~---~~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~E  106 (376)
                      +   +++.++....++|.|+.+..-..=......|++  +||.|.+.
T Consensus        79 ~~g~~~l~~~~~~~~~D~vi~AI~G~aGL~~t~~aik--~gk~iaLA  123 (151)
T d1q0qa2          79 LSGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIR--AGKTILLA  123 (151)
T ss_dssp             EESHHHHHHHHTCTTCCEEEECCSSGGGHHHHHHHHH--TTCEEEEC
T ss_pred             ccChHHHHHHhcCCCCCEEEEecCcccHHHHHHHHHh--cCCeEEEE
Confidence            2   234556666789999999999999999999999  89998874

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.51  E-value=0.00019  Score=54.12  Aligned_cols=73  Identities=18%  Similarity=0.147  Sum_probs=52.1

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCC--HHHHhhC---CCCCEEEEe
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPG--HQELLDS---GLCDVVVVS   81 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~---~~~D~V~i~   81 (376)
                      |||.|+|+|.+|+..+..|.+.   +.+++ +.|.|++   ++++++++++.. ..+.|  -.++|..   .+.|+++++
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~---g~~v~-vid~d~~---~~~~~~~~~~~~-vi~Gd~~~~~~l~~~~i~~a~~vv~~   72 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEK---GHDIV-LIDIDKD---ICKKASAEIDAL-VINGDCTKIKTLEDAGIEDADMYIAV   72 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCEEE-EEESCHH---HHHHHHHHCSSE-EEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHHC---CCCcc-eecCChh---hhhhhhhhhhhh-hccCcccchhhhhhcChhhhhhhccc
Confidence            6899999999999998888775   77876 5699988   566677777755 22222  2333332   358999999


Q ss_pred             CCCCcc
Q 017143           82 TPNMTH   87 (376)
Q Consensus        82 t~~~~h   87 (376)
                      |+++.-
T Consensus        73 t~~d~~   78 (132)
T d1lssa_          73 TGKEEV   78 (132)
T ss_dssp             CSCHHH
T ss_pred             CCcHHH
Confidence            988643

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.44  E-value=6.8e-05  Score=56.43  Aligned_cols=109  Identities=17%  Similarity=0.205  Sum_probs=73.6

Q ss_pred             CceeEEEEeC----ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEE
Q 017143            5 DTVKYGIIGM----GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         5 ~~~~v~iiG~----G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      ++-+|+|||+    +..|...+..|...  ...+|..| .+..+.         -.|.+  +|.|++++-..  +|+|+|
T Consensus         7 ~PksIAVVGaS~~~~~~g~~v~~~L~~~--~~g~v~pV-nP~~~~---------i~G~~--~y~sl~dlp~~--vDlvvi   70 (129)
T d2csua1           7 NPKGIAVIGASNDPKKLGYEVFKNLKEY--KKGKVYPV-NIKEEE---------VQGVK--AYKSVKDIPDE--IDLAII   70 (129)
T ss_dssp             SCSEEEEETCCSCTTSHHHHHHHHHTTC--CSSEEEEE-CSSCSE---------ETTEE--CBSSTTSCSSC--CSEEEE
T ss_pred             CCCeEEEEccCCCCCCcHHHHHHHHHHc--CCCcEEEe-ccCccc---------cCCeE--eecchhhcCCC--CceEEE
Confidence            4579999997    55777777777654  34677765 443321         24654  99999998654  999999


Q ss_pred             eCCCCccHHHHHHHHcCCCCCeEEEecCC-CCC----HHHHHHHHHHHHhCCCeEE
Q 017143           81 STPNMTHYQILMDIINHPKPHHVLVEKPL-CTT----VADCKKVVDAARKRPDILV  131 (376)
Q Consensus        81 ~t~~~~h~~~~~~al~~~~g~~Vl~EKP~-a~~----~~e~~~l~~~a~~~~~~~~  131 (376)
                      ++|+..-.+++.+|.+.| -+.+++=-.. +.+    ...-++|.+.|++ +|+.+
T Consensus        71 ~vp~~~~~~~~~~~~~~g-~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~-~girv  124 (129)
T d2csua1          71 VVPKRFVKDTLIQCGEKG-VKGVVIITAGFGETGEEGKREEKELVEIAHK-YGMRI  124 (129)
T ss_dssp             CSCHHHHHHHHHHHHHHT-CCEEEECCCSSTTSCHHHHHHHHHHHHHHHH-HTCEE
T ss_pred             ecChHHhHHHHHHHHHcC-CCEEEEecccccccchhhHHHHHHHHHHHHH-cCCEE
Confidence            999999999999999854 3445553322 222    2334567788844 47654

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.35  E-value=0.00044  Score=47.98  Aligned_cols=86  Identities=13%  Similarity=0.137  Sum_probs=58.1

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc-CCHHHHhhCCCCCEEEEeCCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF-PGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      +||=+||.|.+|..-+..+...  .++.|.+ +|+.+..  ..++ -++.|++  +| ....+-+.  ++|+|++.+--.
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~--~G~~VsG-SD~~~~~--~t~~-L~~~Gi~--i~~gh~~~~i~--~~d~vV~SsAI~   71 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFS--NGNDVYG-SNIEETE--RTAY-LRKLGIP--IFVPHSADNWY--DPDLVIKTPAVR   71 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH--TTCEEEE-ECSSCCH--HHHH-HHHTTCC--EESSCCTTSCC--CCSEEEECTTCC
T ss_pred             cEEEEEeECHHHHHHHHHHHHh--CCCeEEE-EeCCCCh--hHHH-HHHCCCe--EEeeecccccC--CCCEEEEecCcC
Confidence            6899999999998766555555  6998775 8988653  3344 3456876  33 22223343  489887777644


Q ss_pred             ccHHHHHHHHcCCCCCeEE
Q 017143           86 THYQILMDIINHPKPHHVL  104 (376)
Q Consensus        86 ~h~~~~~~al~~~~g~~Vl  104 (376)
                      ..-+...+|.+  .|.+|+
T Consensus        72 ~~npel~~A~~--~gIpv~   88 (89)
T d1j6ua1          72 DDNPEIVRARM--ERVPIE   88 (89)
T ss_dssp             TTCHHHHHHHH--TTCCEE
T ss_pred             CCCHHHHHHHH--cCCCcc
Confidence            44455788888  889886

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.35  E-value=0.00029  Score=53.56  Aligned_cols=102  Identities=14%  Similarity=0.160  Sum_probs=73.1

Q ss_pred             eeEEEEeCC----hhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeC
Q 017143            7 VKYGIIGMG----MMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         7 ~~v~iiG~G----~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t   82 (376)
                      -+|+|||+.    ..|...+..|.+.   +++++.|- +...         +-.|.+  +|.+++++-..  +|+|+|++
T Consensus        20 ksIAVVGaS~~~~~~g~~v~~~L~~~---g~~v~pVn-P~~~---------~i~G~~--~~~sl~dlp~~--iD~v~i~v   82 (139)
T d2d59a1          20 KKIALVGASPKPERDANIVMKYLLEH---GYDVYPVN-PKYE---------EVLGRK--CYPSVLDIPDK--IEVVDLFV   82 (139)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHT---TCEEEEEC-TTCS---------EETTEE--CBSSGGGCSSC--CSEEEECS
T ss_pred             CeEEEEeecCCCCCchHHHHHHHHHC---CCEEEEEC-Cccc---------ccCCCc--ccccccccCcc--ceEEEEEe
Confidence            479999975    4677777777765   78877653 3222         124655  99999998655  99999999


Q ss_pred             CCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEE
Q 017143           83 PNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQ  132 (376)
Q Consensus        83 ~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~  132 (376)
                      |+..-.+++.+|++  .|..+++==|.+.+.    ++.+.+++ .|+.+.
T Consensus        83 p~~~~~~~~~e~~~--~g~k~v~~~~G~~~e----e~~~~a~~-~gi~vi  125 (139)
T d2d59a1          83 KPKLTMEYVEQAIK--KGAKVVWFQYNTYNR----EASKKADE-AGLIIV  125 (139)
T ss_dssp             CHHHHHHHHHHHHH--HTCSEEEECTTCCCH----HHHHHHHH-TTCEEE
T ss_pred             CHHHHHHHHHHHHH--hCCCEEEEeccccCH----HHHHHHHH-CCCEEE
Confidence            99999999999999  566666666766653    35556644 476544

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.33  E-value=0.0015  Score=48.63  Aligned_cols=97  Identities=20%  Similarity=0.176  Sum_probs=72.9

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      |||+|+|+ |.||+.....+ ..  .+.++++..|.+..                       +.+  .++|+|+-.|.|+
T Consensus         1 mki~i~G~~GrMG~~i~~~~-~~--~~~~l~~~id~~~~-----------------------~~~--~~~DVvIDFS~p~   52 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVF-SE--KGHELVLKVDVNGV-----------------------EEL--DSPDVVIDFSSPE   52 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HH--TTCEEEEEEETTEE-----------------------EEC--SCCSEEEECSCGG
T ss_pred             CEEEEECCCCHHHHHHHHHH-hc--CCCeEEEEECCCcH-----------------------HHh--ccCCEEEEecCHH
Confidence            68999996 99999755444 44  68999988775432                       011  2389999999999


Q ss_pred             ccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeecc
Q 017143           86 THYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEY  137 (376)
Q Consensus        86 ~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~  137 (376)
                      .-.+++..|++  +++++.+=-- ..+.++.++|.+++ +  .++++...+.
T Consensus        53 ~~~~~l~~~~~--~~~p~ViGTT-G~~~~~~~~i~~~a-k--~~pv~~a~N~   98 (128)
T d1vm6a3          53 ALPKTVDLCKK--YRAGLVLGTT-ALKEEHLQMLRELS-K--EVPVVQAYSR   98 (128)
T ss_dssp             GHHHHHHHHHH--HTCEEEECCC-SCCHHHHHHHHHHT-T--TSEEEECSCT
T ss_pred             HHHHHHHHHHh--cCCCEEEEcC-CCCHHHHHHHHHHH-h--hCCEEeeecc
Confidence            99999999999  8899887554 35788888888888 4  4566666554

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.31  E-value=0.00026  Score=56.52  Aligned_cols=62  Identities=19%  Similarity=0.156  Sum_probs=49.4

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      -.+|||||+|.+|+.....+...   +.++. ++|+++.          +..  ...++++++++.+  .|+|++++|-.
T Consensus        42 gk~vgIiG~G~IG~~va~~l~~~---g~~v~-~~d~~~~----------~~~--~~~~~~l~ell~~--sDiv~~~~pl~  103 (181)
T d1qp8a1          42 GEKVAVLGLGEIGTRVGKILAAL---GAQVR-GFSRTPK----------EGP--WRFTNSLEEALRE--ARAAVCALPLN  103 (181)
T ss_dssp             TCEEEEESCSTHHHHHHHHHHHT---TCEEE-EECSSCC----------CSS--SCCBSCSHHHHTT--CSEEEECCCCS
T ss_pred             CceEEEeccccccccceeeeecc---ccccc-ccccccc----------ccc--eeeeechhhhhhc--cchhhcccccc
Confidence            36899999999999998888877   88877 5687764          112  2467899999988  89999999954

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.29  E-value=0.00043  Score=53.07  Aligned_cols=79  Identities=19%  Similarity=0.182  Sum_probs=49.0

Q ss_pred             CCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHH-HHHHHH--HhcCCC-CCccCCHHHHhhCCCCCEE
Q 017143            3 ANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQ-QALKLA--NAFDWP-LKVFPGHQELLDSGLCDVV   78 (376)
Q Consensus         3 ~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~--~~~~~~-~~~~~~~~~~l~~~~~D~V   78 (376)
                      +.+++||+|||+|.+|......+...  +-..-+.++|+++++.+ .+.++.  ..+..+ .....+++++ .  +.|+|
T Consensus         2 m~~~~KI~IIGaG~VG~~~A~~l~~~--~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~~~-~--~adiv   76 (146)
T d1ez4a1           2 MPNHQKVVLVGDGAVGSSYAFAMAQQ--GIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDC-K--DADLV   76 (146)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGG-T--TCSEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhc--CCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHHHh-c--cccEE
Confidence            33578999999999999877777776  44444558999987432 222232  112222 2234577765 3  38999


Q ss_pred             EEeCCCCc
Q 017143           79 VVSTPNMT   86 (376)
Q Consensus        79 ~i~t~~~~   86 (376)
                      +++.....
T Consensus        77 vitag~~~   84 (146)
T d1ez4a1          77 VITAGAPQ   84 (146)
T ss_dssp             EECCCC--
T ss_pred             EEeccccc
Confidence            99876443

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.19  E-value=4e-05  Score=59.01  Aligned_cols=90  Identities=8%  Similarity=-0.005  Sum_probs=60.0

Q ss_pred             ceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      +|||||||+ |..|...++.|.++.=|.++++.+...+..    .+.+.  +..+-....+.+.... .+.|+|+.++|+
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~----Gk~i~--~~~~~~~~~~~~~~~~-~~~d~vf~a~p~   74 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESA----GQRMG--FAESSLRVGDVDSFDF-SSVGLAFFAAAA   74 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTT----TCEEE--ETTEEEECEEGGGCCG-GGCSEEEECSCH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccC----Cccee--eccccchhccchhhhh-ccceEEEecCCc
Confidence            699999995 999999998886321189999988766443    11111  1111011222222222 348999999999


Q ss_pred             CccHHHHHHHHcCCCCCeEE
Q 017143           85 MTHYQILMDIINHPKPHHVL  104 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~~Vl  104 (376)
                      ..-.+++.++++  +|..|+
T Consensus        75 ~~s~~~~~~~~~--~g~~VI   92 (144)
T d2hjsa1          75 EVSRAHAERARA--AGCSVI   92 (144)
T ss_dssp             HHHHHHHHHHHH--TTCEEE
T ss_pred             chhhhhcccccc--CCceEE
Confidence            988899999999  787765

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=97.19  E-value=0.002  Score=49.15  Aligned_cols=96  Identities=11%  Similarity=0.112  Sum_probs=69.5

Q ss_pred             ceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC---------------------CCcc
Q 017143            6 TVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP---------------------LKVF   63 (376)
Q Consensus         6 ~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~---------------------~~~~   63 (376)
                      |-+|+|+| +|.+|..-+.-+.+++ +.|+|+++...+.-  +++.+.+.+|...                     +..+
T Consensus         2 pK~I~IlGsTGSIG~~tL~Vi~~~~-d~f~v~~lsa~~N~--~~L~~q~~ef~Pk~v~i~d~~~~~~l~~~~~~~~~~v~   78 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTLDLIERNL-DRYQVIALTANRNV--KDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAA   78 (150)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTG-GGEEEEEEEESSCH--HHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEEE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCC-CCcEEEEEEeCCCH--HHHHHHHHhhccccceeccHHHHHHHHHHhhhcccccc
Confidence            57999999 5999999998888873 57999999876543  2455555555422                     1222


Q ss_pred             CCHHHH--hhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEe
Q 017143           64 PGHQEL--LDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVE  106 (376)
Q Consensus        64 ~~~~~~--l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~E  106 (376)
                      ...+.+  +...++|.|+.+..-..=...++.|++  +||.|.+.
T Consensus        79 ~g~~~l~~~~~~~~D~vv~Ai~G~~GL~~tl~ai~--~gk~iaLA  121 (150)
T d1r0ka2          79 AGADALVEAAMMGADWTMAAIIGCAGLKATLAAIR--KGKTVALA  121 (150)
T ss_dssp             ESHHHHHHHHTSCCSEEEECCCSGGGHHHHHHHHH--TTSEEEEC
T ss_pred             cCccchheecccccceeeeecCchhHHHHHHHHHh--cCCEEEEe
Confidence            233322  234569999999998888999999999  89998874

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.17  E-value=0.00069  Score=54.72  Aligned_cols=73  Identities=15%  Similarity=0.160  Sum_probs=44.6

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHH------------HHHHhcCCCCCccCCHHHHhhCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQAL------------KLANAFDWPLKVFPGHQELLDSGL   74 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~~~~   74 (376)
                      |||+|||+|.+|....-.+ +   .+.++++ +|.++++.+...            ++.+..........+....+.+  
T Consensus         1 MkI~ViGlG~vGl~~a~~~-a---~g~~V~g-~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~--   73 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLL-S---LQNEVTI-VDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKE--   73 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHH-T---TTSEEEE-ECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHH--
T ss_pred             CEEEEECCChhHHHHHHHH-H---CCCcEEE-EECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhc--
Confidence            6899999999998765444 3   3789885 699998543222            1111111111122334444444  


Q ss_pred             CCEEEEeCCCCc
Q 017143           75 CDVVVVSTPNMT   86 (376)
Q Consensus        75 ~D~V~i~t~~~~   86 (376)
                      .|+++||+|+..
T Consensus        74 ~~ii~v~vpt~~   85 (196)
T d1dlja2          74 AELVIIATPTNY   85 (196)
T ss_dssp             CSEEEECCCCCE
T ss_pred             cccccccCCccc
Confidence            899999999764

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.15  E-value=0.0012  Score=50.88  Aligned_cols=74  Identities=23%  Similarity=0.218  Sum_probs=48.7

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHH-HHHHHH---HhcCCC--CCccCCHHHHhhCCCCCEE
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQ-QALKLA---NAFDWP--LKVFPGHQELLDSGLCDVV   78 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~---~~~~~~--~~~~~~~~~~l~~~~~D~V   78 (376)
                      ++.||+|||+|.+|......+...  +-.+++ ++|.+++.++ .+..+.   ...+..  ....+++++.+++  .|+|
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~--~~~el~-L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--adiV   80 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALR--ELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTG--ADCV   80 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHH--TCCEEE-EECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTT--CSEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhC--CCceEE-EEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcC--CCeE
Confidence            579999999999998665555555  445755 8899887432 222322   122333  2334677888876  8999


Q ss_pred             EEeCC
Q 017143           79 VVSTP   83 (376)
Q Consensus        79 ~i~t~   83 (376)
                      +++..
T Consensus        81 vitag   85 (154)
T d1pzga1          81 IVTAG   85 (154)
T ss_dssp             EECCS
T ss_pred             EEecc
Confidence            99885

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.15  E-value=0.00062  Score=59.53  Aligned_cols=94  Identities=16%  Similarity=0.220  Sum_probs=67.1

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      ..-+++|||+|..++.|+.++....  .++-+-|+++++++.+...+..+..++.  ...+.++.+..  .|+|+.+|+.
T Consensus       124 ~~~~l~iiGaG~QA~~~~~al~~~~--~i~~i~v~~r~~e~~~~~~~~~~~~~~~--~~~~~~~a~~~--aDiV~taT~s  197 (320)
T d1omoa_         124 NSSVFGFIGCGTQAYFQLEALRRVF--DIGEVKAYDVREKAAKKFVSYCEDRGIS--ASVQPAEEASR--CDVLVTTTPS  197 (320)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHS--CCCEEEEECSSHHHHHHHHHHHHHTTCC--EEECCHHHHTS--SSEEEECCCC
T ss_pred             CccEEEEecCcccHHHHHHHHHHHh--hhhhcccccCCHHHHHHHHHHHHhcCCc--cccchhhhhcc--ccEEEEeccC
Confidence            4568999999999999999998884  4777889999998655444444445654  44556666655  8999999885


Q ss_pred             CccHHHHHHHHcCCCCCeEEEec
Q 017143           85 MTHYQILMDIINHPKPHHVLVEK  107 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~~Vl~EK  107 (376)
                      ..- -+--..++  .|.||..=-
T Consensus       198 ~~P-~~~~~~l~--~G~hv~~iG  217 (320)
T d1omoa_         198 RKP-VVKAEWVE--EGTHINAIG  217 (320)
T ss_dssp             SSC-CBCGGGCC--TTCEEEECS
T ss_pred             ccc-ccchhhcC--CCCeEeecC
Confidence            332 11124578  899999843

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.14  E-value=0.00036  Score=55.72  Aligned_cols=130  Identities=12%  Similarity=0.047  Sum_probs=77.4

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-C--CccCCHHH----Hhh---CCCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-L--KVFPGHQE----LLD---SGLCD   76 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~----~l~---~~~~D   76 (376)
                      =+|.|+|+|.+|...+...+..   +.+-+.++|+++++++.    ++++|.. +  ..-++..+    +.+   ...+|
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~---Ga~~Vi~~~~~~~~~~~----a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~D  102 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSL---GAENVIVIAGSPNRLKL----AEEIGADLTLNRRETSVEERRKAIMDITHGRGAD  102 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TBSEEEEEESCHHHHHH----HHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEE
T ss_pred             CEEEEECCCccchhheeccccc---ccccccccccccccccc----cccccceEEEeccccchHHHHHHHHHhhCCCCce
Confidence            4799999999999888777665   66444467888875544    4455643 1  11133332    222   23489


Q ss_pred             EEEEeCCCCccHHHHHHHHcCCCCCeEEEe-----cCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHH
Q 017143           77 VVVVSTPNMTHYQILMDIINHPKPHHVLVE-----KPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVK  151 (376)
Q Consensus        77 ~V~i~t~~~~h~~~~~~al~~~~g~~Vl~E-----KP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~  151 (376)
                      +|+.++......+.+.++++.+ |+-|++=     +|+..+.     ..... .+ ++.+.-.+.. ..+.+..+-++++
T Consensus       103 vvid~vG~~~~~~~a~~~l~~~-G~iv~~G~~~~~~~~~~~~-----~~~l~-~k-~l~i~G~~~~-~~~~~~~~~~~i~  173 (182)
T d1vj0a2         103 FILEATGDSRALLEGSELLRRG-GFYSVAGVAVPQDPVPFKV-----YEWLV-LK-NATFKGIWVS-DTSHFVKTVSITS  173 (182)
T ss_dssp             EEEECSSCTTHHHHHHHHEEEE-EEEEECCCCSCCCCEEECH-----HHHTT-TT-TCEEEECCCC-CHHHHHHHHHHHH
T ss_pred             EEeecCCchhHHHHHHHHhcCC-CEEEEEeecCCCCcccccc-----HHHHH-HC-CcEEEEEEeC-CHHHHHHHHHHHH
Confidence            9999999888889999999843 5556652     3443332     11223 33 5555433222 2234556666665


Q ss_pred             c
Q 017143          152 S  152 (376)
Q Consensus       152 ~  152 (376)
                      +
T Consensus       174 ~  174 (182)
T d1vj0a2         174 R  174 (182)
T ss_dssp             T
T ss_pred             H
Confidence            4

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=97.14  E-value=0.00086  Score=47.25  Aligned_cols=88  Identities=19%  Similarity=0.180  Sum_probs=58.3

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC-
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP-   83 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~-   83 (376)
                      +..||=+||.|.+|..-+..+...  .+++|.+ +|.....  ..+.+.+ .|+++ ......+.+.  ++|+|++.+. 
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~--~G~~VsG-SD~~~~~--~~~~L~~-~Gi~v-~~g~~~~~i~--~~d~vV~S~AI   77 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLN--EGYQISG-SDIADGV--VTQRLAQ-AGAKI-YIGHAEEHIE--GASVVVVSSAI   77 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHH--HTCEEEE-EESCCSH--HHHHHHH-TTCEE-EESCCGGGGT--TCSEEEECTTS
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHh--CCCEEEE-EeCCCCh--hhhHHHH-CCCeE-EECCccccCC--CCCEEEECCCc
Confidence            468999999999998665444444  5999776 7876542  4455544 58762 2233344454  4898877766 


Q ss_pred             CCccHHHHHHHHcCCCCCeEE
Q 017143           84 NMTHYQILMDIINHPKPHHVL  104 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl  104 (376)
                      +..|.+ ..+|.+  +|.+|+
T Consensus        78 ~~~npe-l~~A~~--~gipii   95 (96)
T d1p3da1          78 KDDNPE-LVTSKQ--KRIPVI   95 (96)
T ss_dssp             CTTCHH-HHHHHH--TTCCEE
T ss_pred             CCCCHH-HHHHHH--cCCCEE
Confidence            456766 566888  889886

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.11  E-value=0.0006  Score=52.40  Aligned_cols=79  Identities=16%  Similarity=0.279  Sum_probs=49.8

Q ss_pred             CCCCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH-HHHHHHHHh---cCCCCCc-cCCHHHHhhCCCC
Q 017143            1 MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSR-QQALKLANA---FDWPLKV-FPGHQELLDSGLC   75 (376)
Q Consensus         1 m~~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~~---~~~~~~~-~~~~~~~l~~~~~   75 (376)
                      |..+...||+|||+|.+|......+...  +-+.-+.++|+++++. ..+.++..-   .+.++.. .+++++ +++  .
T Consensus         1 m~~~~~~KI~IiGaG~vG~~~a~~l~~~--~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~-l~d--a   75 (148)
T d1ldna1           1 MKNNGGARVVVIGAGFVGASYVFALMNQ--GIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDD-CRD--A   75 (148)
T ss_dssp             CTTTTSCEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGG-TTT--C
T ss_pred             CCCCCCCeEEEECcCHHHHHHHHHHHhc--CCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHH-hcc--c
Confidence            6667788999999999999877777665  4444455899988743 222333221   1222222 245544 444  7


Q ss_pred             CEEEEeCCC
Q 017143           76 DVVVVSTPN   84 (376)
Q Consensus        76 D~V~i~t~~   84 (376)
                      |+|+++...
T Consensus        76 Dvvvitag~   84 (148)
T d1ldna1          76 DLVVICAGA   84 (148)
T ss_dssp             SEEEECCSC
T ss_pred             eeEEEeccc
Confidence            999987654

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.10  E-value=0.0002  Score=56.50  Aligned_cols=129  Identities=15%  Similarity=0.213  Sum_probs=77.0

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc-----CCHHHHhhCCCCCEEEEe
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF-----PGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~D~V~i~   81 (376)
                      =+|.|+|+|.+|...+..++..   +.++++ +|+++++++.++    ++|.+ .++     .++.+.+. ..+|.|+.+
T Consensus        29 ~~vlI~GaG~vG~~a~q~ak~~---G~~vi~-~~~~~~k~~~a~----~lGa~-~~i~~~~~~~~~~~~~-~~~d~vi~~   98 (168)
T d1piwa2          29 KKVGIVGLGGIGSMGTLISKAM---GAETYV-ISRSSRKREDAM----KMGAD-HYIATLEEGDWGEKYF-DTFDLIVVC   98 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH---TCEEEE-EESSSTTHHHHH----HHTCS-EEEEGGGTSCHHHHSC-SCEEEEEEC
T ss_pred             CEEEEECCCCcchhHHHHhhhc---cccccc-cccchhHHHHhh----ccCCc-EEeeccchHHHHHhhh-cccceEEEE
Confidence            4799999999999877766665   789876 577887665544    45544 222     12333333 348999988


Q ss_pred             CCC--CccHHHHHHHHcCCCCCeEEE---ecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCC
Q 017143           82 TPN--MTHYQILMDIINHPKPHHVLV---EKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSI  155 (376)
Q Consensus        82 t~~--~~h~~~~~~al~~~~g~~Vl~---EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~i  155 (376)
                      +..  ....+.+..+++. .|+-|++   ++|...+...      .. .+ ++.+.-.+. --.+.++.+-+++++|+|
T Consensus        99 ~~~~~~~~~~~~~~~l~~-~G~iv~~G~~~~~~~~~~~~------~~-~k-~~~i~Gs~~-g~~~~~~e~l~li~~gkI  167 (168)
T d1piwa2          99 ASSLTDIDFNIMPKAMKV-GGRIVSISIPEQHEMLSLKP------YG-LK-AVSISYSAL-GSIKELNQLLKLVSEKDI  167 (168)
T ss_dssp             CSCSTTCCTTTGGGGEEE-EEEEEECCCCCSSCCEEECG------GG-CB-SCEEEECCC-CCHHHHHHHHHHHHHTTC
T ss_pred             ecCCccchHHHHHHHhhc-cceEEEeccccccccccHHH------HH-hC-CcEEEEEee-CCHHHHHHHHHHHHhCCC
Confidence            654  3345667777774 3777777   4444333322      23 22 444332222 113467777788877765

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=97.10  E-value=0.00043  Score=55.77  Aligned_cols=66  Identities=26%  Similarity=0.374  Sum_probs=50.4

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      .+|||||+|.+|+..++.+...   +.++.+ +|+.....     .....++  ..+.++++++..  .|+|++++|-.
T Consensus        50 ktvgIiG~G~IG~~va~~l~~f---g~~v~~-~d~~~~~~-----~~~~~~~--~~~~~l~~ll~~--sD~i~~~~plt  115 (193)
T d1mx3a1          50 ETLGIIGLGRVGQAVALRAKAF---GFNVLF-YDPYLSDG-----VERALGL--QRVSTLQDLLFH--SDCVTLHCGLN  115 (193)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT---TCEEEE-ECTTSCTT-----HHHHHTC--EECSSHHHHHHH--CSEEEECCCCC
T ss_pred             ceEEEeccccccccceeeeecc---ccceee-ccCccccc-----chhhhcc--ccccchhhcccc--CCEEEEeeccc
Confidence            5899999999999998888876   899875 67765421     1223354  367899999998  79999999943

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.10  E-value=0.0004  Score=55.04  Aligned_cols=94  Identities=15%  Similarity=0.138  Sum_probs=66.2

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc-----C-CHHHHh---hCCCCCE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF-----P-GHQELL---DSGLCDV   77 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~l---~~~~~D~   77 (376)
                      =+|.|+|+|.+|...+..++..   +...+.++|+++++++    +++++|.+ .++     + ..+.+.   ....+|+
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~---Ga~~Vi~~d~~~~r~~----~a~~~Ga~-~~i~~~~~~~~~~~~~~~~~~~G~d~  101 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIA---GASRIIAIDINGEKFP----KAKALGAT-DCLNPRELDKPVQDVITELTAGGVDY  101 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCSEEEEECSCGGGHH----HHHHTTCS-EEECGGGCSSCHHHHHHHHHTSCBSE
T ss_pred             CEEEEECCChHHHHHHHHHHHh---CCceeeeeccchHHHH----HHHHhCCC-cccCCccchhhhhhhHhhhhcCCCcE
Confidence            4799999999999888877775   7777778999998654    45566654 222     1 122222   2346899


Q ss_pred             EEEeCCCCccHHHHHHHHcCCCCCeEEEecC
Q 017143           78 VVVSTPNMTHYQILMDIINHPKPHHVLVEKP  108 (376)
Q Consensus        78 V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP  108 (376)
                      |+-|+....-.+.+.++++.+.|+-|++=-|
T Consensus       102 vie~~G~~~~~~~a~~~~~~g~G~~v~vG~~  132 (174)
T d1e3ia2         102 SLDCAGTAQTLKAAVDCTVLGWGSCTVVGAK  132 (174)
T ss_dssp             EEESSCCHHHHHHHHHTBCTTTCEEEECCCS
T ss_pred             EEEecccchHHHHHHHHhhcCCeEEEecCCC
Confidence            9999998887888888887323677776433

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.09  E-value=0.00046  Score=54.82  Aligned_cols=100  Identities=13%  Similarity=0.064  Sum_probs=65.2

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCC-HHHHh---hCCCCCEEEEeC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPG-HQELL---DSGLCDVVVVST   82 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l---~~~~~D~V~i~t   82 (376)
                      =.|.|+|+|.+|...+..++..   +..-+.++|+++++++.++++...+-+...-.++ .+++.   ....+|.|+.++
T Consensus        31 ~tVlI~G~GgvGl~ai~~ak~~---G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~~  107 (176)
T d1d1ta2          31 STCVVFGLGGVGLSVIMGCKSA---GASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVI  107 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEECS
T ss_pred             CEEEEECCCchhHHHHHHHHHc---CCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEeC
Confidence            3599999999999988888776   5443446899999877666654433222111122 23332   234699999999


Q ss_pred             CCCccHHHHHHHHcCCCCCeEEEecCC
Q 017143           83 PNMTHYQILMDIINHPKPHHVLVEKPL  109 (376)
Q Consensus        83 ~~~~h~~~~~~al~~~~g~~Vl~EKP~  109 (376)
                      ....-.+.+...+..+.|+-|++=-|.
T Consensus       108 g~~~~~~~a~~~~~~~~G~~v~vG~~~  134 (176)
T d1d1ta2         108 GHLETMIDALASCHMNYGTSVVVGVPP  134 (176)
T ss_dssp             CCHHHHHHHHTTSCTTTCEEEECSCCC
T ss_pred             CchHHHHHHHHHhhcCCeEEEEEEccc
Confidence            988777777776653336777764443

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.07  E-value=0.003  Score=48.49  Aligned_cols=106  Identities=19%  Similarity=0.215  Sum_probs=71.1

Q ss_pred             ceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      +-||+||| +|.||......|.+.   ++++. ++|+++...                   .++.++.  .|.+++++|.
T Consensus         9 ~~kI~iIGg~G~mG~~la~~L~~~---G~~V~-~~d~~~~~~-------------------~~~~~~~--~~~v~~~~~~   63 (152)
T d2pv7a2           9 IHKIVIVGGYGKLGGLFARYLRAS---GYPIS-ILDREDWAV-------------------AESILAN--ADVVIVSVPI   63 (152)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTT---TCCEE-EECTTCGGG-------------------HHHHHTT--CSEEEECSCG
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHHc---CCCcE-ecccccccc-------------------cchhhhh--ccccccccch
Confidence            46999999 999999999988874   88866 678766521                   1233333  7999999999


Q ss_pred             CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHH
Q 017143           85 MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPP  142 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~  142 (376)
                      ......+.+.+..-....++++-- +...+-.+++.+.. .  . . +++...-+.|.
T Consensus        64 ~~~~~v~~~~~~~~~~~~iiiD~~-Svk~~~~~~~~~~~-~--~-~-~v~~hP~~Gp~  115 (152)
T d2pv7a2          64 NLTLETIERLKPYLTENMLLADLT-SVKREPLAKMLEVH-T--G-A-VLGLHPMFGAD  115 (152)
T ss_dssp             GGHHHHHHHHGGGCCTTSEEEECC-SCCHHHHHHHHHHC-S--S-E-EEEEEECSCTT
T ss_pred             hhheeeeecccccccCCceEEEec-ccCHHHHHHHHHHc-c--C-C-EEEecccCCCc
Confidence            988888887765322235777763 55666666665544 2  2 2 24445556663

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=97.07  E-value=0.00026  Score=54.17  Aligned_cols=113  Identities=13%  Similarity=0.173  Sum_probs=67.5

Q ss_pred             eeEEEEe-CChhhHHHHHHhhhhc-CCCcEEEEEeCCChhhHHHHHHHHHhcCCC-CCccCCHH-HHhhCCCCCEEEEeC
Q 017143            7 VKYGIIG-MGMMGREHFINLHHLR-SQGVSVVCIADPHLQSRQQALKLANAFDWP-LKVFPGHQ-ELLDSGLCDVVVVST   82 (376)
Q Consensus         7 ~~v~iiG-~G~~g~~~~~~~~~~~-~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~l~~~~~D~V~i~t   82 (376)
                      ||||||| +|..|+..+..|.+.+ =|.++++.+.......  +.   - .++.. ...+...+ +.+.  ++|+|+.|+
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~g--k~---~-~~~~~~~~~~~~~~~~~~~--~~DvvF~al   72 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGV--PA---P-NFGKDAGMLHDAFDIESLK--QLDAVITCQ   72 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSS--BC---C-CSSSCCCBCEETTCHHHHT--TCSEEEECS
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccc--cc---c-ccCCcceeeecccchhhhc--cccEEEEec
Confidence            6899999 5889999888765321 1678988877654321  10   0 11111 11111111 2333  489999999


Q ss_pred             CCCccHHHHHHHHcCCCCCe-EEE----------ecCCCCCHHHHHHHHHHHHhCCCeE
Q 017143           83 PNMTHYQILMDIINHPKPHH-VLV----------EKPLCTTVADCKKVVDAARKRPDIL  130 (376)
Q Consensus        83 ~~~~h~~~~~~al~~~~g~~-Vl~----------EKP~a~~~~e~~~l~~~a~~~~~~~  130 (376)
                      |+..-.+++.++++  +|+. +.+          +.|+....--...|.++- +++...
T Consensus        73 p~~~s~~~~~~l~~--~g~~~~VIDlSsdfR~~~dvpl~lPEiN~~~I~~a~-~~~~k~  128 (147)
T d1mb4a1          73 GGSYTEKVYPALRQ--AGWKGYWIDAASTLRMDKEAIITLDPVNLKQILHGI-HHGTKT  128 (147)
T ss_dssp             CHHHHHHHHHHHHH--TTCCSEEEESSSTTTTCTTEEEECHHHHHHHHHHHH-HTTCCE
T ss_pred             CchHHHHHhHHHHH--cCCceEEEeCCccccccCCceEEeCCcCHHHHHHHH-HcCCcc
Confidence            99999999999999  7765 444          445554443344444444 443333

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.02  E-value=0.0013  Score=51.38  Aligned_cols=131  Identities=18%  Similarity=0.197  Sum_probs=83.6

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-CCcc--CCHHHHhhC--CCCCEEEEe
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LKVF--PGHQELLDS--GLCDVVVVS   81 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~l~~--~~~D~V~i~   81 (376)
                      =+|.|+|+|.+|...+..++..   +.+++ ++++++++++    +++++|.+ +..+  +++.+.+.+  ++.|.++++
T Consensus        29 ~~vlv~G~G~iG~~a~~~a~~~---g~~v~-~~~~~~~r~~----~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~  100 (168)
T d1rjwa2          29 EWVAIYGIGGLGHVAVQYAKAM---GLNVV-AVDIGDEKLE----LAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVT  100 (168)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT---TCEEE-EECSCHHHHH----HHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEES
T ss_pred             CEEEEeecccchhhhhHHHhcC---CCeEe-ccCCCHHHhh----hhhhcCcceecccccchhhhhcccccCCCceEEee
Confidence            4789999999998877666664   67755 5678877443    45566765 1112  244444432  457888889


Q ss_pred             CCCCccHHHHHHHHcCCCCCeEEE---ecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCC
Q 017143           82 TPNMTHYQILMDIINHPKPHHVLV---EKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSI  155 (376)
Q Consensus        82 t~~~~h~~~~~~al~~~~g~~Vl~---EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~i  155 (376)
                      +......+.+..+++.+ |+-+++   ..|...+..      ... .+ ++.+. +........+..+-+++++|+|
T Consensus       101 ~~~~~~~~~a~~~l~~~-G~i~~~g~~~~~~~~~~~------~~~-~~-~~~i~-gs~~~~~~~~~~~l~l~~~Gki  167 (168)
T d1rjwa2         101 AVSKPAFQSAYNSIRRG-GACVLVGLPPEEMPIPIF------DTV-LN-GIKII-GSIVGTRKDLQEALQFAAEGKV  167 (168)
T ss_dssp             SCCHHHHHHHHHHEEEE-EEEEECCCCSSEEEEEHH------HHH-HT-TCEEE-ECCSCCHHHHHHHHHHHHTTSC
T ss_pred             cCCHHHHHHHHHHhccC-CceEecccccCCCCCCHH------HHH-HC-CcEEE-EEeeCCHHHHHHHHHHHHhCCC
Confidence            88888889999999842 555555   444444432      233 33 44443 4444455678888899998875

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=97.01  E-value=0.00077  Score=54.37  Aligned_cols=65  Identities=18%  Similarity=0.355  Sum_probs=49.5

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      -.+|||||+|.+|+..++.+...   +.++.+ +|+....   ...   ..+   ....++++++.+  .|+|++++|-.
T Consensus        43 gk~vgIiG~G~IG~~va~~l~~f---g~~V~~-~d~~~~~---~~~---~~~---~~~~~l~~~l~~--sDii~~~~plt  107 (197)
T d1j4aa1          43 DQVVGVVGTGHIGQVFMQIMEGF---GAKVIT-YDIFRNP---ELE---KKG---YYVDSLDDLYKQ--ADVISLHVPDV  107 (197)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHT---TCEEEE-ECSSCCH---HHH---HTT---CBCSCHHHHHHH--CSEEEECSCCC
T ss_pred             CCeEEEecccccchhHHHhHhhh---cccccc-cCccccc---ccc---cce---eeeccccccccc--cccccccCCcc
Confidence            36899999999999999888877   889875 6776542   111   112   245789999987  89999999954

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.01  E-value=0.00042  Score=54.52  Aligned_cols=68  Identities=16%  Similarity=0.196  Sum_probs=51.6

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      .-||.|+|+|..++..+.+|.+.   +++-+.|++|+.+   +++++++.++..  ..+++    ...+.|+|+-|||-.
T Consensus        17 ~~~vlIlGaGGaarai~~aL~~~---g~~~I~I~nR~~~---ka~~L~~~~~~~--~~~~~----~~~~~DliINaTpiG   84 (167)
T d1npya1          17 NAKVIVHGSGGMAKAVVAAFKNS---GFEKLKIYARNVK---TGQYLAALYGYA--YINSL----ENQQADILVNVTSIG   84 (167)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHT---TCCCEEEECSCHH---HHHHHHHHHTCE--EESCC----TTCCCSEEEECSSTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC---CCCEEEEecccHH---HHHHHHHhhhhh--hhhcc----cccchhhheeccccC
Confidence            45899999999999988888886   6655668999988   677888887754  22222    224589999999954

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.01  E-value=0.0005  Score=54.34  Aligned_cols=129  Identities=12%  Similarity=0.116  Sum_probs=81.7

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc----CCHHHHhhC---CCCCEEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF----PGHQELLDS---GLCDVVV   79 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~---~~~D~V~   79 (376)
                      =.|.|+|+|.+|...+..++..   +...+.++|+++++++    +++++|.. .++    +++++.++.   ..+|+|+
T Consensus        34 ~~vli~GaG~vG~~~~~~a~~~---g~~~vv~~~~~~~k~~----~~~~~ga~-~~i~~~~~~~~~~~~~~~~~g~d~vi  105 (172)
T d1h2ba2          34 AYVAIVGVGGLGHIAVQLLKVM---TPATVIALDVKEEKLK----LAERLGAD-HVVDARRDPVKQVMELTRGRGVNVAM  105 (172)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH---CCCEEEEEESSHHHHH----HHHHTTCS-EEEETTSCHHHHHHHHTTTCCEEEEE
T ss_pred             CEEEEeCCChHHHHHHHHHHhh---cCcccccccchhHHHH----HHhhcccc-eeecCcccHHHHHHHhhCCCCceEEE
Confidence            4689999999999888877776   5555667888887544    34455544 222    234444442   3589999


Q ss_pred             EeCCCCccHHHHHHHHcCCCCCeEEEecC--CCCCHHHHHHHHHHHHhCCCeEEEEeeccccC-HHHHHHHHHHHcCC
Q 017143           80 VSTPNMTHYQILMDIINHPKPHHVLVEKP--LCTTVADCKKVVDAARKRPDILVQVGLEYRYM-PPVAKLIQIVKSGS  154 (376)
Q Consensus        80 i~t~~~~h~~~~~~al~~~~g~~Vl~EKP--~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~-p~~~~~k~~i~~g~  154 (376)
                      .++......+.+..+++.+ |+-|++=-+  ...+      +.... .+ ++.+.-.+  .++ +.++.+-+++++|+
T Consensus       106 d~~g~~~~~~~a~~~l~~~-G~iv~~G~~~~~~~~------~~~l~-~k-~~~i~Gs~--~~~~~d~~~~l~l~~~GK  172 (172)
T d1h2ba2         106 DFVGSQATVDYTPYLLGRM-GRLIIVGYGGELRFP------TIRVI-SS-EVSFEGSL--VGNYVELHELVTLALQGK  172 (172)
T ss_dssp             ESSCCHHHHHHGGGGEEEE-EEEEECCCSSCCCCC------HHHHH-HT-TCEEEECC--SCCHHHHHHHHHHHHTTS
T ss_pred             EecCcchHHHHHHHHHhCC-CEEEEEeCcccccCC------HHHHH-hC-CcEEEEEE--ecCHHHHHHHHHHHHcCC
Confidence            9999988889999998853 666665322  2222      23344 33 44444333  333 34777788888874

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.00  E-value=0.00066  Score=53.69  Aligned_cols=94  Identities=16%  Similarity=0.101  Sum_probs=62.0

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC-CccCCHHHHhh---CCCCCEEEEeC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL-KVFPGHQELLD---SGLCDVVVVST   82 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~---~~~~D~V~i~t   82 (376)
                      =+|.|+|+|.+|...+..++.+   +...+.++++++++++.++++....-+.. ...++.++.+.   ...+|+|+.++
T Consensus        30 ~tVlI~GaGGvG~~aiq~ak~~---G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~~  106 (176)
T d2fzwa2          30 SVCAVFGLGGVGLAVIMGCKVA---GASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECI  106 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH---TCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred             CEEEEecchhHHHHHHHHHHHH---hcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeecC
Confidence            4689999999999888877777   66666778998886655554432221210 11233444433   24589999999


Q ss_pred             CCCccHHHHHHHHcCCCC-CeEEE
Q 017143           83 PNMTHYQILMDIINHPKP-HHVLV  105 (376)
Q Consensus        83 ~~~~h~~~~~~al~~~~g-~~Vl~  105 (376)
                      ....-.+.+..+++  .| ..+++
T Consensus       107 G~~~~~~~~~~~~~--~g~~~~~v  128 (176)
T d2fzwa2         107 GNVKVMRAALEACH--KGWGVSVV  128 (176)
T ss_dssp             CCHHHHHHHHHTBC--TTTCEEEE
T ss_pred             CCHHHHHHHHHhhc--CCceeEEE
Confidence            88777777888888  55 44444

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=96.99  E-value=0.0018  Score=50.76  Aligned_cols=100  Identities=24%  Similarity=0.206  Sum_probs=63.9

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCC-------CC---------------Cc--
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDW-------PL---------------KV--   62 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-------~~---------------~~--   62 (376)
                      |||||-|.|+||+..++.+....++.+++++|-|+..  .+...-+-+ |.-       ++               +.  
T Consensus         1 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~--~~~~ayLlk-yDSvhG~~~~~i~~~~~~~~~ing~~I~~~~   77 (172)
T d1rm4a1           1 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGG--VKQASHLLK-YDSILGTFDADVKTAGDSAISVDGKVIKVVS   77 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECTTC--HHHHHHHHH-CCTTTCSCSSCEEECTTSEEEETTEEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcCCCC--HHHHHHHHh-cCcccccccceeEecCCcceEECCEEEEEec
Confidence            7999999999999999887765446799999999853  233333222 210       00               00  


Q ss_pred             cCCHHHHhhC-CCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCC
Q 017143           63 FPGHQELLDS-GLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLC  110 (376)
Q Consensus        63 ~~~~~~~l~~-~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a  110 (376)
                      ..+.+++-.. ..+|+|+=||--..-.+-+..-|++|+ |-|++--|.-
T Consensus        78 ~~~p~~i~W~~~gvDiViEcTG~f~~~~~~~~hl~~Ga-kkViiSAP~k  125 (172)
T d1rm4a1          78 DRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGA-KKVLITAPGK  125 (172)
T ss_dssp             CSCGGGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTC-SCEEESSCCB
T ss_pred             CCChHHCChhhcCCCEEEecCceEccHHHHHHHHhcCC-ceEEeecccc
Confidence            1122222111 248888888888877787877787653 4677766653

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=96.99  E-value=0.00092  Score=52.22  Aligned_cols=101  Identities=19%  Similarity=0.212  Sum_probs=68.4

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH---hcCC-C----------------CCc--c
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN---AFDW-P----------------LKV--F   63 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~---~~~~-~----------------~~~--~   63 (376)
                      |+||||-|.|++|+..++.+...  ++++++++-|+..+. +...-+-+   -+|. +                +..  .
T Consensus         1 kikIgINGFGRIGR~v~R~~~~~--~~~~ivaINd~~~~~-~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~   77 (169)
T d1u8fo1           1 KVKVGVNGFGRIGRLVTRAAFNS--GKVDIVAINDPFIDL-NYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQE   77 (169)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH--CSSEEEEEECSSSCH-HHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECC
T ss_pred             CcEEEEECCcHHHHHHHHHHHHC--CCcEEEEecCCCccH-HHHHHHHhhccccCCcCCeEEEECCEEEECCEEEEEEEC
Confidence            58999999999999998888777  899999999964331 12222222   1111 0                001  2


Q ss_pred             CCHHHHhhC-CCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCC
Q 017143           64 PGHQELLDS-GLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLC  110 (376)
Q Consensus        64 ~~~~~~l~~-~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a  110 (376)
                      .+.+++-.. .++|+|+=||-...-.+-+..-++.| -|-|++--|..
T Consensus        78 ~~p~~i~W~~~~vDiViEcTG~f~~~~~~~~hl~~g-akkViiSaP~~  124 (169)
T d1u8fo1          78 RDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGG-AKRVIISAPSA  124 (169)
T ss_dssp             SSGGGCCTTTTTCCEEEECSSSCCSHHHHGGGGGGT-CSEEEESSCCS
T ss_pred             CChhhCCccccCCCEEEEecceeccHHHHHHHHhcC-CceEeeccccc
Confidence            234444332 36999999999988888777778865 46788888854

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=96.97  E-value=0.0012  Score=51.87  Aligned_cols=78  Identities=18%  Similarity=0.181  Sum_probs=50.7

Q ss_pred             ceeEEEEeCChhhH--HHHHHhhhhcC-CCcEEEEEeCCChhhHHHHHH----HHHhcCCC--CCccCCHHHHhhCCCCC
Q 017143            6 TVKYGIIGMGMMGR--EHFINLHHLRS-QGVSVVCIADPHLQSRQQALK----LANAFDWP--LKVFPGHQELLDSGLCD   76 (376)
Q Consensus         6 ~~~v~iiG~G~~g~--~~~~~~~~~~~-~~~~~~~v~d~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~l~~~~~D   76 (376)
                      .+||+|||+|.+|.  .++..+..... ..-+|+ ++|+++++++....    ....++.+  +..++|.++.|.+  .|
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eiv-L~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~d--ad   78 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVT-LMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIID--AD   78 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEE-EECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT--CS
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEE-EEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccC--CC
Confidence            58999999999875  34444443310 234655 89999986643222    23334444  3456899999976  89


Q ss_pred             EEEEeCCCCc
Q 017143           77 VVVVSTPNMT   86 (376)
Q Consensus        77 ~V~i~t~~~~   86 (376)
                      .|+++.....
T Consensus        79 ~Vv~~~~~g~   88 (171)
T d1obba1          79 FVINTAMVGG   88 (171)
T ss_dssp             EEEECCCTTH
T ss_pred             eEeeeccccc
Confidence            9998876543

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.96  E-value=0.0011  Score=51.37  Aligned_cols=86  Identities=24%  Similarity=0.289  Sum_probs=61.2

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ..+|+|||.|.-|+.|..+|+..   +++|+--. +...   +..+.+++-|+.  + -+++|+.+.  .|+|.+.+|+.
T Consensus        16 ~k~IaViGYGsQG~AhAlNLrDS---G~~V~VGL-r~gs---~s~~~A~~~Gf~--v-~~~~eA~~~--aDiim~L~PD~   83 (182)
T d1np3a2          16 GKKVAIIGYGSQGHAHACNLKDS---GVDVTVGL-RSGS---ATVAKAEAHGLK--V-ADVKTAVAA--ADVVMILTPDE   83 (182)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHT---TCCEEEEC-CTTC---HHHHHHHHTTCE--E-ECHHHHHHT--CSEEEECSCHH
T ss_pred             CCEEEEEeeCcHhHHHHhhhhhc---CCCEEEEc-CCCC---ccHHHHhhhccc--c-ccHHHHhhh--cCeeeeecchH
Confidence            36899999999999999888775   88766433 3322   222334556765  4 458888887  79999999999


Q ss_pred             ccHHHHHHH----HcCCCCCeEEE
Q 017143           86 THYQILMDI----INHPKPHHVLV  105 (376)
Q Consensus        86 ~h~~~~~~a----l~~~~g~~Vl~  105 (376)
                      .|.++-.+.    |+  .|+.+..
T Consensus        84 ~q~~vy~~~I~p~lk--~g~~L~F  105 (182)
T d1np3a2          84 FQGRLYKEEIEPNLK--KGATLAF  105 (182)
T ss_dssp             HHHHHHHHHTGGGCC--TTCEEEE
T ss_pred             HHHHHHHHhhhhhcC--CCcEEEE
Confidence            998877643    55  5555544

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.95  E-value=6.5e-05  Score=59.18  Aligned_cols=78  Identities=14%  Similarity=0.166  Sum_probs=49.2

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-----CCccCCHHHHhhCCCCCEEEEe
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-----LKVFPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~D~V~i~   81 (376)
                      |||+|||+|.+|......|.+.   +.+|+ ++++++++.   .... ..+..     .....+..+.+..  +|+|+++
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~---G~~V~-~~~r~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~D~iii~   70 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQ---GHEVQ-GWLRVPQPY---CSVN-LVETDGSIFNESLTANDPDFLAT--SDLLLVT   70 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCEEE-EECSSCCSE---EEEE-EECTTSCEEEEEEEESCHHHHHT--CSEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHHC---CCceE-EEEcCHHHh---hhhc-cccCCccccccccccchhhhhcc--cceEEEe
Confidence            6999999999999988888775   78876 456766522   1110 11111     0112233444544  8999999


Q ss_pred             CCCCccHHHHHHH
Q 017143           82 TPNMTHYQILMDI   94 (376)
Q Consensus        82 t~~~~h~~~~~~a   94 (376)
                      ++.....+.+..+
T Consensus        71 vka~~~~~~~~~l   83 (167)
T d1ks9a2          71 LKAWQVSDAVKSL   83 (167)
T ss_dssp             SCGGGHHHHHHHH
T ss_pred             ecccchHHHHHhh
Confidence            9987665555544

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=96.94  E-value=0.00088  Score=53.69  Aligned_cols=68  Identities=18%  Similarity=0.352  Sum_probs=50.5

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ..++||||+|.+|+..++.++..   +.++. .+|+...+.    ......++  ..+.++++++++  .|+|+++.|-.
T Consensus        44 ~~~vgiiG~G~IG~~va~~l~~f---g~~v~-~~d~~~~~~----~~~~~~~~--~~~~~l~~~l~~--sD~v~~~~plt  111 (188)
T d2naca1          44 AMHVGTVAAGRIGLAVLRRLAPF---DVHLH-YTDRHRLPE----SVEKELNL--TWHATREDMYPV--CDVVTLNCPLH  111 (188)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGG---TCEEE-EECSSCCCH----HHHHHHTC--EECSSHHHHGGG--CSEEEECSCCC
T ss_pred             ccceeeccccccchhhhhhhhcc---CceEE-EEeeccccc----cccccccc--cccCCHHHHHHh--ccchhhccccc
Confidence            47999999999999988888776   77866 467654321    12223344  367899999988  89999999843

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.92  E-value=0.001  Score=49.96  Aligned_cols=100  Identities=17%  Similarity=0.261  Sum_probs=60.3

Q ss_pred             eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc------CCHHHH-hhCCCCCEEEE
Q 017143            8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF------PGHQEL-LDSGLCDVVVV   80 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-l~~~~~D~V~i   80 (376)
                      ++.|+|+|.+|+..+..|.+.   +.+++ ++|.+++   ++++++. .+.+ ..+      +.++++ +  .+.|+|++
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~---g~~vv-vid~d~~---~~~~~~~-~~~~-~~~gd~~~~~~l~~a~i--~~a~~vi~   70 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRM---GHEVL-AVDINEE---KVNAYAS-YATH-AVIANATEENELLSLGI--RNFEYVIV   70 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT---TCCCE-EEESCHH---HHHHTTT-TCSE-EEECCTTCTTHHHHHTG--GGCSEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHC---CCeEE-EecCcHH---HHHHHHH-hCCc-ceeeecccchhhhccCC--ccccEEEE
Confidence            689999999999999988875   77766 5789988   4555443 3433 112      123333 2  34899999


Q ss_pred             eCCCCccHHHHHH-HHcCCCCCeEEEecCCCCCHHHHHHHHH
Q 017143           81 STPNMTHYQILMD-IINHPKPHHVLVEKPLCTTVADCKKVVD  121 (376)
Q Consensus        81 ~t~~~~h~~~~~~-al~~~~g~~Vl~EKP~a~~~~e~~~l~~  121 (376)
                      +++......++.. +.+......|++-   +.+.+..+.|.+
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~iiar---~~~~~~~~~l~~  109 (134)
T d2hmva1          71 AIGANIQASTLTTLLLKELDIPNIWVK---AQNYYHHKVLEK  109 (134)
T ss_dssp             CCCSCHHHHHHHHHHHHHTTCSEEEEE---CCSHHHHHHHHH
T ss_pred             EcCchHHhHHHHHHHHHHcCCCcEEee---cccHhHHHHHHH
Confidence            9998755444333 2221122345432   445566555433

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.88  E-value=0.001  Score=52.53  Aligned_cols=136  Identities=10%  Similarity=0.055  Sum_probs=79.2

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc----CC--HHHHhh---CCCCCE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF----PG--HQELLD---SGLCDV   77 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~l~---~~~~D~   77 (376)
                      =+|.|+|+|.+|...+..++..   +...+.++|+++++++.++    ++|.. .++    .+  .++...   ...+|.
T Consensus        29 ~~VlV~GaGgvGl~a~~~ak~~---G~~~Vi~~d~~~~kl~~a~----~lGa~-~~i~~~~~d~~~~~~~~~~~~~G~d~  100 (174)
T d1p0fa2          29 STCAVFGLGGVGFSAIVGCKAA---GASRIIGVGTHKDKFPKAI----ELGAT-ECLNPKDYDKPIYEVICEKTNGGVDY  100 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH---TCSEEEEECSCGGGHHHHH----HTTCS-EEECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred             CEEEEECCCchhHHHHHHHHHc---CCceeeccCChHHHHHHHH----HcCCc-EEEcCCCchhHHHHHHHHhcCCCCcE
Confidence            4799999999999988888876   5555667899998765554    55544 221    12  344433   245899


Q ss_pred             EEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccC-HHHHHHHHHHHcCC
Q 017143           78 VVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYM-PPVAKLIQIVKSGS  154 (376)
Q Consensus        78 V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~-p~~~~~k~~i~~g~  154 (376)
                      |+.++....-.+.+..+++.+.|+-|++=-|.....-+... .... .  ++.+.-.+.-.+. ..+.++-+++++|+
T Consensus       101 vid~~g~~~~~~~~~~~~~~~~G~~v~vG~~~~~~~~~~~~-~~~~-~--~~~i~Gs~~G~~~~~d~~~lidl~~~gK  174 (174)
T d1p0fa2         101 AVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDP-LLLL-T--GRSLKGSVFGGFKGEEVSRLVDDYMKKK  174 (174)
T ss_dssp             EEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECT-HHHH-T--TCEEEECSGGGCCGGGHHHHHHHHHTTS
T ss_pred             EEEcCCCchHHHHHHHHHHHhcCceEEEEEecCccccccCH-HHHh-C--CCEEEEEEeCCCCHHHHHHHHHHHHcCC
Confidence            99999887666677777763235666654332211111111 1122 2  2234322321222 25677778887764

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.86  E-value=0.0016  Score=50.79  Aligned_cols=99  Identities=21%  Similarity=0.241  Sum_probs=68.5

Q ss_pred             eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH---hcCC---C--------------CC--ccCC
Q 017143            8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN---AFDW---P--------------LK--VFPG   65 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~---~~~~---~--------------~~--~~~~   65 (376)
                      ||||-|.|+||+..++.+...  +++++++|-|+..+. +...-+-+   -+|.   +              ++  ...+
T Consensus         2 kigINGfGRIGR~v~R~~~~~--~~~~iv~INd~~~d~-~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~i~~~~~   78 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGR--KDIEVVAINDPFMDL-NHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKD   78 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTC--SSEEEEEEECTTCCH-HHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEECCSS
T ss_pred             eEEEECCCHHHHHHHHHHhhC--CCcEEEEECCCCCCh-HHhhhhhhcccccccceeeeccCCceEEecCcEEEEEeCCC
Confidence            899999999999999888776  899999999964331 12323222   1110   0              00  1123


Q ss_pred             HHHHhhC-CCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCC
Q 017143           66 HQELLDS-GLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLC  110 (376)
Q Consensus        66 ~~~~l~~-~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a  110 (376)
                      .+++-.. .++|+|+=||--....+.+..-|++| -|.|++--|..
T Consensus        79 p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~g-akkViiSAP~k  123 (166)
T d2b4ro1          79 PSQIPWGKCQVDVVCESTGVFLTKELASSHLKGG-AKKVIMSAPPK  123 (166)
T ss_dssp             GGGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTT-CSEEEESSCCS
T ss_pred             hHHccccccCCCEEEEecccccchhhhhhhhccC-CCEEEEecccc
Confidence            4443332 26999999999999999999999876 47899988865

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=0.0016  Score=51.09  Aligned_cols=133  Identities=17%  Similarity=0.244  Sum_probs=77.4

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc--CCHHHHhh-CCCCCEEEEeCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF--PGHQELLD-SGLCDVVVVSTP   83 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~-~~~~D~V~i~t~   83 (376)
                      =+|.|+|+|.+|...+...+..   +.++++ .+.++++++    +++++|.+ .++  .+-+.... ...+|.|+.++.
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~---Ga~~i~-~~~~~~~~~----~a~~lGad-~~i~~~~~~~~~~~~~~~D~vid~~g  102 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAM---GAHVVA-FTTSEAKRE----AAKALGAD-EVVNSRNADEMAAHLKSFDFILNTVA  102 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCEEEE-EESSGGGHH----HHHHHTCS-EEEETTCHHHHHTTTTCEEEEEECCS
T ss_pred             CEEEEeccchHHHHHHHHhhcc---cccchh-hccchhHHH----HHhccCCc-EEEECchhhHHHHhcCCCceeeeeee
Confidence            4799999999999887766665   788885 556666444    44556655 222  33332222 235899999999


Q ss_pred             CCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCC
Q 017143           84 NMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGS  154 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~  154 (376)
                      .....+.+..+++- .|+-|++=-|.  +........... .+ ++.+. |....-.+.++.+-+++.+++
T Consensus       103 ~~~~~~~~~~~l~~-~G~iv~~G~~~--~~~~~~~~~~l~-~k-~~~i~-Gs~~~~~~d~~e~l~l~a~~~  167 (168)
T d1uufa2         103 APHNLDDFTTLLKR-DGTMTLVGAPA--TPHKSPEVFNLI-MK-RRAIA-GSMIGGIPETQEMLDFCAEHG  167 (168)
T ss_dssp             SCCCHHHHHTTEEE-EEEEEECCCC---------CHHHHH-TT-TCEEE-ECCSCCHHHHHHHHHHHHHHT
T ss_pred             cchhHHHHHHHHhc-CCEEEEeccCC--CCcccccHHHHH-HC-CcEEE-EEeecCHHHHHHHHHHHHHcC
Confidence            87778888888874 36666653332  222222334444 33 44443 332222345666666666544

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=0.0026  Score=49.26  Aligned_cols=100  Identities=21%  Similarity=0.168  Sum_probs=68.7

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh---cC---CC--------------CCc--c
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA---FD---WP--------------LKV--F   63 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~---~~---~~--------------~~~--~   63 (376)
                      ++||||-|.|++|+..++.+...  +++++++|-|+...  +...-+-+.   ||   .+              ++.  .
T Consensus         1 tikigINGFGRIGR~v~R~~~~~--~~i~ivaINd~~~~--~~~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~I~i~~~   76 (166)
T d1gado1           1 TIKVGINGFGRIGRIVFRAAQKR--SDIEIVAINDLLDA--DYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAE   76 (166)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTC--SSEEEEEEECSSCH--HHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECC
T ss_pred             CeEEEEECCcHHHHHHHHHHhhC--CCeEEEEEeCCCCH--HHHhhhheecCCCCCcCCeEEEeCCEEEECCEEEEEEeC
Confidence            48999999999999999888776  89999999986432  223222221   11   00              011  2


Q ss_pred             CCHHHHhh-CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCC
Q 017143           64 PGHQELLD-SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLC  110 (376)
Q Consensus        64 ~~~~~~l~-~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a  110 (376)
                      .+.+++-. +..+|+|+=||--..-.+-+..-|+.| -|-|++--|..
T Consensus        77 ~~p~~i~W~~~gvDiViEcTG~f~t~~~~~~hl~~g-akkViiSaP~~  123 (166)
T d1gado1          77 RDPANLKWDEVGVDVVAEATGLFLTDETARKHITAG-AKKVVMTGPSK  123 (166)
T ss_dssp             SSGGGGCHHHHTCSEEEECSSSCCSHHHHTHHHHTT-CSEEEESSCCS
T ss_pred             CChHHCCccccCCCEEEEccccccCHHHHHHHhcCC-CceEEeecccc
Confidence            23454433 235999999999988888888888866 36788877754

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.0019  Score=51.80  Aligned_cols=104  Identities=14%  Similarity=0.181  Sum_probs=62.4

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh-------cCCC----------------CCc
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA-------FDWP----------------LKV   62 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~-------~~~~----------------~~~   62 (376)
                      --||+|||+|.||......++..   +++++ ++|++++.++++.+..++       .+..                +..
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~~---G~~V~-l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~   79 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAAT---GHTVV-LVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT   79 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT---TCEEE-EECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE
T ss_pred             eEEEEEECcCHHHHHHHHHHHhC---CCcEE-EEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccc
Confidence            45999999999999887777764   88866 899999876655432221       1110                124


Q ss_pred             cCCHHHHhhCCCCCEEEEeCCCCccH--HHHHHHHcCCCCCeEEEecCCCCCHHH
Q 017143           63 FPGHQELLDSGLCDVVVVSTPNMTHY--QILMDIINHPKPHHVLVEKPLCTTVAD  115 (376)
Q Consensus        63 ~~~~~~~l~~~~~D~V~i~t~~~~h~--~~~~~al~~~~g~~Vl~EKP~a~~~~e  115 (376)
                      ++++.+.+.+  .|+|+=|.|...-.  ++..+.-+.....-++.----+.+..+
T Consensus        80 ~~d~~~a~~~--ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~  132 (192)
T d1f0ya2          80 STDAASVVHS--TDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITS  132 (192)
T ss_dssp             ESCHHHHTTS--CSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHH
T ss_pred             cchhHhhhcc--cceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccch
Confidence            5677777765  78888888765432  222222111122345554444555544

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=96.84  E-value=0.0012  Score=53.44  Aligned_cols=64  Identities=20%  Similarity=0.400  Sum_probs=48.5

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ..+|||||+|.+|+..++.++..   +.++++ +|+....   .    ....   ..+.++++++..  .|+|++++|-.
T Consensus        45 ~ktvgIiG~G~IG~~va~~l~~f---g~~v~~-~d~~~~~---~----~~~~---~~~~~l~~l~~~--~D~v~~~~plt  108 (199)
T d1dxya1          45 QQTVGVMGTGHIGQVAIKLFKGF---GAKVIA-YDPYPMK---G----DHPD---FDYVSLEDLFKQ--SDVIDLHVPGI  108 (199)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHT---TCEEEE-ECSSCCS---S----CCTT---CEECCHHHHHHH--CSEEEECCCCC
T ss_pred             ceeeeeeeccccccccccccccc---ceeeec-cCCccch---h----hhcc---hhHHHHHHHHHh--cccceeeeccc
Confidence            36899999999999988888877   899774 6776541   0    0111   245789999988  89999999854

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=96.82  E-value=0.0017  Score=51.33  Aligned_cols=137  Identities=12%  Similarity=0.076  Sum_probs=79.3

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC--CCcc---CCHHHHhh---CCCCCEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP--LKVF---PGHQELLD---SGLCDVV   78 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~l~---~~~~D~V   78 (376)
                      =.|.|+|+|.+|...+..++..   +...+.+.++++++.+.+    +++|..  +...   +..++.+.   ...+|+|
T Consensus        30 dtVlV~GaGG~G~~~~~~~~~~---g~~~Vi~~~~~~~k~~~a----~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~v  102 (176)
T d2jhfa2          30 STCAVFGLGGVGLSVIMGCKAA---GAARIIGVDINKDKFAKA----KEVGATECVNPQDYKKPIQEVLTEMSNGGVDFS  102 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCSEEEEECSCGGGHHHH----HHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred             CEEEEECCCCcHHHHHHHHHHc---CCceEEeecCcHHHHHHH----HHhCCeeEEecCCchhHHHHHHHHHhcCCCCEE
Confidence            3699999999998888888876   544455678888865544    445544  1111   12333333   2468999


Q ss_pred             EEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEee--ccccCHHHHHHHHHHHcCC
Q 017143           79 VVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGL--EYRYMPPVAKLIQIVKSGS  154 (376)
Q Consensus        79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~--~~r~~p~~~~~k~~i~~g~  154 (376)
                      +.++......+.+...++.+.|+-++.-.|.......  -..... .+ ++.+.-.+  +.++...+.++-+++++|+
T Consensus       103 id~~G~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~-~~-~~~i~Gs~~G~~~~~~~~~~li~~~~~GK  176 (176)
T d2jhfa2         103 FEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLS--MNPMLL-LS-GRTWKGAIFGGFKSKDSVPKLVADFMAKK  176 (176)
T ss_dssp             EECSCCHHHHHHHHHHBCTTTCEEEECSCCCTTCCEE--ECTHHH-HT-TCEEEECSGGGCCHHHHHHHHHHHHHTTS
T ss_pred             EecCCchhHHHHHHHHHhcCCcceEEecCCCCccccc--ccHHHH-hC-CCEEEEEEEeCCCHHHHHHHHHHHHHCcC
Confidence            9999998888888888883223334443332221111  011122 22 44444333  2344446666777777764

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.80  E-value=0.00047  Score=54.09  Aligned_cols=128  Identities=15%  Similarity=0.165  Sum_probs=80.3

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc----CCHHHHh-h-CCCCCEEEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF----PGHQELL-D-SGLCDVVVV   80 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l-~-~~~~D~V~i   80 (376)
                      =+|.|+|+|.+|...+..++..   +.++++ +|+++++++    +++++|.+ .++    ++..+.+ . ....|.+++
T Consensus        29 ~~VlV~GaG~vG~~~~~~ak~~---G~~Vi~-~~~~~~~~~----~a~~~Ga~-~~i~~~~~~~~~~~~~~~~g~~~~i~   99 (166)
T d1llua2          29 QWVAISGIGGLGHVAVQYARAM---GLHVAA-IDIDDAKLE----LARKLGAS-LTVNARQEDPVEAIQRDIGGAHGVLV   99 (166)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCEEEE-EESCHHHHH----HHHHTTCS-EEEETTTSCHHHHHHHHHSSEEEEEE
T ss_pred             CEEEEeeccccHHHHHHHHHHc---CCccce-ecchhhHHH----hhhccCcc-ccccccchhHHHHHHHhhcCCccccc
Confidence            4799999999999877766665   678775 478777544    44566654 222    2333332 2 134688889


Q ss_pred             eCCCCccHHHHHHHHcCCCCCeEEE---ecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcC
Q 017143           81 STPNMTHYQILMDIINHPKPHHVLV---EKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSG  153 (376)
Q Consensus        81 ~t~~~~h~~~~~~al~~~~g~~Vl~---EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g  153 (376)
                      ++......+.+.++++.+ |+-|++   .+|...+.      .... .+ ++.+. |....-.+.++.+.+++.+|
T Consensus       100 ~~~~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~------~~~~-~k-~~~i~-Gs~~~~~~d~~e~l~l~~~G  165 (166)
T d1llua2         100 TAVSNSAFGQAIGMARRG-GTIALVGLPPGDFPTPI------FDVV-LK-GLHIA-GSIVGTRADLQEALDFAGEG  165 (166)
T ss_dssp             CCSCHHHHHHHHTTEEEE-EEEEECCCCSSEEEEEH------HHHH-HT-TCEEE-ECCSCCHHHHHHHHHHHHTT
T ss_pred             ccccchHHHHHHHHhcCC-cEEEEEEecCCCccCCH------HHHH-hC-CcEEE-EEeecCHHHHHHHHHHHHCc
Confidence            998888888888888853 777776   44443332      2334 33 44443 32222234678888888876

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.00033  Score=53.63  Aligned_cols=87  Identities=16%  Similarity=0.150  Sum_probs=53.8

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhc-CCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHH-HHhhCCCCCEEEEeCC
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLR-SQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQ-ELLDSGLCDVVVVSTP   83 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~-~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~D~V~i~t~   83 (376)
                      .||||||+ |..|+..+..|.+++ =+..+++++......    .+........ ....+..+ +.+.  ++|+|+.|+|
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~----g~~~~~~~~~-~~~~~~~~~~~~~--~~DivF~a~~   74 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLG----QAAPSFGGTT-GTLQDAFDLEALK--ALDIIVTCQG   74 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTT----SBCCGGGTCC-CBCEETTCHHHHH--TCSEEEECSC
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccc----cccccccCCc-eeeecccchhhhh--cCcEEEEecC
Confidence            48999995 999999987665431 167788776543322    1111101011 11212111 2333  4899999999


Q ss_pred             CCccHHHHHHHHcCCCCCe
Q 017143           84 NMTHYQILMDIINHPKPHH  102 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~  102 (376)
                      +..-.+++.++.+  +|..
T Consensus        75 ~~~s~~~~~~~~~--~g~~   91 (146)
T d1t4ba1          75 GDYTNEIYPKLRE--SGWQ   91 (146)
T ss_dssp             HHHHHHHHHHHHH--TTCC
T ss_pred             chHHHHhhHHHHh--cCCC
Confidence            9988899999999  7764

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=96.78  E-value=0.0014  Score=52.56  Aligned_cols=68  Identities=18%  Similarity=0.291  Sum_probs=49.4

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      -.++||||+|.+|+...+.+...   +.++.+ +|+......   ... ..+.  ..+.++++++..  .|+|++++|-.
T Consensus        47 g~tvgIiG~G~IG~~va~~l~~f---g~~v~~-~d~~~~~~~---~~~-~~~~--~~~~~l~~ll~~--sD~v~l~~plt  114 (191)
T d1gdha1          47 NKTLGIYGFGSIGQALAKRAQGF---DMDIDY-FDTHRASSS---DEA-SYQA--TFHDSLDSLLSV--SQFFSLNAPST  114 (191)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTT---TCEEEE-ECSSCCCHH---HHH-HHTC--EECSSHHHHHHH--CSEEEECCCCC
T ss_pred             ccceEEeecccchHHHHHHHHhh---cccccc-ccccccccc---hhh-cccc--cccCCHHHHHhh--CCeEEecCCCC
Confidence            37899999999999988877776   888774 676554211   111 1222  356889999998  79999999954

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=96.74  E-value=0.0032  Score=48.99  Aligned_cols=100  Identities=18%  Similarity=0.164  Sum_probs=67.5

Q ss_pred             eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh---cCC---CCC----------------ccCC
Q 017143            8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA---FDW---PLK----------------VFPG   65 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~---~~~---~~~----------------~~~~   65 (376)
                      ||||-|.|++|+..++.+....++++++++|=|...  .+...-+-+.   +|.   ++.                ...+
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd~~~--~e~~ayLlkyDS~hG~~~~~v~~~~~~l~ing~~I~~~~~~~   79 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTD--TKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPD   79 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSSC--HHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSS
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCEEEEEeccCcc--HHHHHHHHhccccccccCceEEEECCEEEECCEEEEEEeCCC
Confidence            899999999999998887765447899999998742  2333333321   110   000                1123


Q ss_pred             HHHHhhC-CCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCC
Q 017143           66 HQELLDS-GLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLC  110 (376)
Q Consensus        66 ~~~~l~~-~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a  110 (376)
                      .+++-.. ..+|+|+=||--....+-+.+-++.| -|.|++--|..
T Consensus        80 p~~i~W~~~gvD~ViEcTG~f~t~~~~~~hl~~G-akkViiSAP~k  124 (169)
T d1hdgo1          80 PSKLPWKDLGVDFVIESTGVFRNREKAELHLQAG-AKKVIITAPAK  124 (169)
T ss_dssp             GGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTT-CSEEEESSCCB
T ss_pred             hhhCCccccCCCEEEEecceeccccchhhhccCC-CceEEEecccC
Confidence            4443321 25899999999998889999899865 36788877854

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=96.72  E-value=0.0057  Score=47.61  Aligned_cols=82  Identities=12%  Similarity=0.036  Sum_probs=53.5

Q ss_pred             CceeEEEEeCChhhHH-HHHHh-hhhcCCCc--EEEEEeCCChhhHHHHHHH----HHhcCCC--CCccCCHHHHhhCCC
Q 017143            5 DTVKYGIIGMGMMGRE-HFINL-HHLRSQGV--SVVCIADPHLQSRQQALKL----ANAFDWP--LKVFPGHQELLDSGL   74 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~-~~~~~-~~~~~~~~--~~~~v~d~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~l~~~~   74 (376)
                      +.+||+|||+|..+.. .+..+ ...  +.+  .-+.++|.++++++.....    ....+.+  +..++|+++.+++  
T Consensus         2 k~~KI~iIGaGsv~~~~~~~~ll~~~--~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~--   77 (167)
T d1u8xx1           2 KSFSIVIAGGGSTFTPGIVLMLLDHL--EEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTD--   77 (167)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTT--TTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSS--
T ss_pred             CCceEEEECCChhhhHHHHHHHHhhh--hhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCC--
Confidence            5699999999987653 33333 333  332  3456899999876432222    2334544  3456789999987  


Q ss_pred             CCEEEEeCCCCccHHH
Q 017143           75 CDVVVVSTPNMTHYQI   90 (376)
Q Consensus        75 ~D~V~i~t~~~~h~~~   90 (376)
                      .|+|+++.-...+.-.
T Consensus        78 AD~Vvitag~~~~~g~   93 (167)
T d1u8xx1          78 VDFVMAHIRVGKYAMR   93 (167)
T ss_dssp             CSEEEECCCTTHHHHH
T ss_pred             CCEEEECCCcCCCCce
Confidence            8999999887654433

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.71  E-value=0.0028  Score=48.96  Aligned_cols=76  Identities=14%  Similarity=0.171  Sum_probs=48.8

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH-HHHHHHHH---hcCCC-CCccCCHHHHhhCCCCCEE
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSR-QQALKLAN---AFDWP-LKVFPGHQELLDSGLCDVV   78 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~---~~~~~-~~~~~~~~~~l~~~~~D~V   78 (376)
                      +++.||+|||+|.+|......+...  +-+.-+.++|++++.. ..+.++..   ..+.+ ....++++++ .  +.|+|
T Consensus        17 ~~~~KI~IIGaG~VG~~~A~~l~~~--~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~-~--~adiv   91 (159)
T d2ldxa1          17 LSRCKITVVGVGDVGMACAISILLK--GLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVS-A--NSKLV   91 (159)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTT--TSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGG-T--TEEEE
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhc--CCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchhhh-c--cccEE
Confidence            4567999999999999877777766  5555566899988743 23334432   22322 1223566655 3  36999


Q ss_pred             EEeCCC
Q 017143           79 VVSTPN   84 (376)
Q Consensus        79 ~i~t~~   84 (376)
                      +++...
T Consensus        92 vitag~   97 (159)
T d2ldxa1          92 IITAGA   97 (159)
T ss_dssp             EECCSC
T ss_pred             EEeccc
Confidence            887753

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=96.68  E-value=0.0017  Score=51.20  Aligned_cols=133  Identities=14%  Similarity=0.118  Sum_probs=76.9

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC------CHHHHhh---CCCCCE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP------GHQELLD---SGLCDV   77 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~---~~~~D~   77 (376)
                      =+|.|+|+|.+|...+..++..   +...+.++|+++++++.++    ++|.+ .+++      ..++...   ...+|+
T Consensus        30 ~~VlI~G~Gg~g~~~~~~~~~~---g~~~Vi~~~~~~~rl~~a~----~~GAd-~~in~~~~~~~~~~~~~~~~~~G~d~  101 (175)
T d1cdoa2          30 STCAVFGLGAVGLAAVMGCHSA---GAKRIIAVDLNPDKFEKAK----VFGAT-DFVNPNDHSEPISQVLSKMTNGGVDF  101 (175)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCSEEEEECSCGGGHHHHH----HTTCC-EEECGGGCSSCHHHHHHHHHTSCBSE
T ss_pred             CEEEEEecCCccchHHHHHHHH---hhchheeecchHHHHHHHH----HcCCc-EEEcCCCcchhHHHHHHhhccCCcce
Confidence            4699999999998877777765   4544556799888655444    55654 2221      1233333   246899


Q ss_pred             EEEeCCCCccHHHHHHHHcCCCCCeEEE--ecCCCCCHHHHHHHHHHHHhCCCeEEEEee--ccccCHHHHHHHHHHHcC
Q 017143           78 VVVSTPNMTHYQILMDIINHPKPHHVLV--EKPLCTTVADCKKVVDAARKRPDILVQVGL--EYRYMPPVAKLIQIVKSG  153 (376)
Q Consensus        78 V~i~t~~~~h~~~~~~al~~~~g~~Vl~--EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~--~~r~~p~~~~~k~~i~~g  153 (376)
                      |+.++....-...+..++.  +|..+++  =-|-.........+  .. .  +..+.-.+  ++++...+.++-+++.+|
T Consensus       102 vid~~G~~~~~~~a~~~~~--~g~~~~~~~g~~~~~~~~~~~~~--~~-~--~~~i~Gs~~G~~~~~~d~~~~i~l~~~g  174 (175)
T d1cdoa2         102 SLECVGNVGVMRNALESCL--KGWGVSVLVGWTDLHDVATRPIQ--LI-A--GRTWKGSMFGGFKGKDGVPKMVKAYLDK  174 (175)
T ss_dssp             EEECSCCHHHHHHHHHTBC--TTTCEEEECSCCSSSCEEECHHH--HH-T--TCEEEECSGGGCCHHHHHHHHHHHHHTT
T ss_pred             eeeecCCHHHHHHHHHHhh--CCCcceeEEEecCCcccCccHHH--HH-C--CcEEEEEEEeCCcHHHHHHHHHHHHHcC
Confidence            9999998776777777766  4433332  22222111111111  22 2  23343333  334445677788888876


Q ss_pred             C
Q 017143          154 S  154 (376)
Q Consensus       154 ~  154 (376)
                      +
T Consensus       175 K  175 (175)
T d1cdoa2         175 K  175 (175)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.67  E-value=0.0044  Score=44.89  Aligned_cols=87  Identities=18%  Similarity=0.098  Sum_probs=57.9

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC--CCccCCHHHHhhCCCCCEEEEeCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP--LKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      .-||.|||.|.+|..-+..+...   +.+++.+. +....  ..++++.+.++.  .+.|+.  +.+..  .++|+++|.
T Consensus        12 ~k~vlVvG~G~va~~ka~~ll~~---ga~v~v~~-~~~~~--~~~~~~~~~~i~~~~~~~~~--~dl~~--~~lv~~at~   81 (113)
T d1pjqa1          12 DRDCLIVGGGDVAERKARLLLEA---GARLTVNA-LTFIP--QFTVWANEGMLTLVEGPFDE--TLLDS--CWLAIAATD   81 (113)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT---TBEEEEEE-SSCCH--HHHHHHTTTSCEEEESSCCG--GGGTT--CSEEEECCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC---CCeEEEEe-ccCCh--HHHHHHhcCCceeeccCCCH--HHhCC--CcEEeecCC
Confidence            46999999999999988888885   78877554 43332  455565554443  123332  23433  899999988


Q ss_pred             CC-ccHHHHHHHHcCCCCCeEE
Q 017143           84 NM-THYQILMDIINHPKPHHVL  104 (376)
Q Consensus        84 ~~-~h~~~~~~al~~~~g~~Vl  104 (376)
                      +. ...++...|-+  +|+.|=
T Consensus        82 d~~~n~~i~~~a~~--~~ilVN  101 (113)
T d1pjqa1          82 DDTVNQRVSDAAES--RRIFCN  101 (113)
T ss_dssp             CHHHHHHHHHHHHH--TTCEEE
T ss_pred             CHHHHHHHHHHHHH--cCCEEE
Confidence            75 44566677777  777764

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=96.66  E-value=0.00073  Score=51.06  Aligned_cols=105  Identities=14%  Similarity=0.128  Sum_probs=71.0

Q ss_pred             eeEEEEeCCh----hhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeC
Q 017143            7 VKYGIIGMGM----MGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         7 ~~v~iiG~G~----~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t   82 (376)
                      -+|||||+..    .|...+..|.+.   ++.++- +.+.+.    ..   .-+|.+  .|.++.++-..  +|+|+|++
T Consensus        14 ksIAVVGaS~~~~k~g~~v~~~L~~~---g~~~~~-v~~~~~----~~---~i~g~~--~~~~l~~i~~~--iD~v~v~~   78 (136)
T d1iuka_          14 KTIAVLGAHKDPSRPAHYVPRYLREQ---GYRVLP-VNPRFQ----GE---ELFGEE--AVASLLDLKEP--VDILDVFR   78 (136)
T ss_dssp             CEEEEETCCSSTTSHHHHHHHHHHHT---TCEEEE-ECGGGT----TS---EETTEE--CBSSGGGCCSC--CSEEEECS
T ss_pred             CeEEEEeecCCCCCchHHHHHHHhcC---CCCceE-EEeccc----cc---eeecee--cccchhhccCC--CceEEEec
Confidence            4799999844    666777777664   787664 444332    00   123554  89999888654  89999999


Q ss_pred             CCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 017143           83 PNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQV  133 (376)
Q Consensus        83 ~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v  133 (376)
                      |+..-.+++.+|++  .|...++=-|.+.+.    ++.+.|++ +|+.+..
T Consensus        79 p~~~v~~~v~~~~~--~g~k~i~~q~G~~~~----e~~~~a~~-~Gi~vV~  122 (136)
T d1iuka_          79 PPSALMDHLPEVLA--LRPGLVWLQSGIRHP----EFEKALKE-AGIPVVA  122 (136)
T ss_dssp             CHHHHTTTHHHHHH--HCCSCEEECTTCCCH----HHHHHHHH-TTCCEEE
T ss_pred             cHHHHHHHHHHHHh--hCCCeEEEecCccCH----HHHHHHHH-cCCEEEc
Confidence            99988899999998  444444444555543    46777844 4876554

>d1h9aa1 c.2.1.3 (A:1-181,A:413-426) Glucose 6-phosphate dehydrogenase, N-terminal domain {Leuconostoc mesenteroides [TaxId: 1245]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose 6-phosphate dehydrogenase, N-terminal domain
species: Leuconostoc mesenteroides [TaxId: 1245]

Probab=96.65  E-value=0.019  Score=45.76  Aligned_cols=49  Identities=12%  Similarity=0.123  Sum_probs=36.6

Q ss_pred             CCEEEEeCCCCccHHHHHHHHcCCC-----CCeEEEecCCCCCHHHHHHHHHHH
Q 017143           75 CDVVVVSTPNMTHYQILMDIINHPK-----PHHVLVEKPLCTTVADCKKVVDAA  123 (376)
Q Consensus        75 ~D~V~i~t~~~~h~~~~~~al~~~~-----g~~Vl~EKP~a~~~~e~~~l~~~a  123 (376)
                      .-+.+.++||..=..++...-+++.     ...|.+|||++.+.+-|++|-+..
T Consensus       111 ~rifYLAvpP~~F~~i~~~L~~~~l~~~~~~~RvVvEKPfG~Dl~SA~~Ln~~l  164 (195)
T d1h9aa1         111 NRIFYMSVAPRFFGTIAKYLKSEGLLADTGYNRLMIEKPFGTSYDTAAELQNDL  164 (195)
T ss_dssp             CEEEEECSCGGGHHHHHHHHHHTTCSCSSSCEEEEECSCSCSSHHHHHHHHHHH
T ss_pred             ceEEEEecCHHHHHHHHHHHHHhhccccCCceEEEEeCCccCCHHHHHHHHHHH
Confidence            3488999999876555554434211     136999999999999999998887

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.64  E-value=0.0028  Score=50.45  Aligned_cols=66  Identities=23%  Similarity=0.379  Sum_probs=49.1

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      ..+++|||+|.+|+.....+...   +.++++ +|+...+.   .  ....++   .+.+++++|+.  .|+|++++|-.
T Consensus        44 ~k~vgiiG~G~IG~~va~~~~~f---g~~v~~-~d~~~~~~---~--~~~~~~---~~~~l~ell~~--sDiv~~~~Plt  109 (184)
T d1ygya1          44 GKTVGVVGLGRIGQLVAQRIAAF---GAYVVA-YDPYVSPA---R--AAQLGI---ELLSLDDLLAR--ADFISVHLPKT  109 (184)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTT---TCEEEE-ECTTSCHH---H--HHHHTC---EECCHHHHHHH--CSEEEECCCCS
T ss_pred             ceeeeeccccchhHHHHHHhhhc---cceEEe-ecCCCChh---H--HhhcCc---eeccHHHHHhh--CCEEEEcCCCC
Confidence            46899999999999888877776   788775 67765521   1  112343   35789999998  89999999954

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=96.59  E-value=0.0034  Score=49.19  Aligned_cols=102  Identities=22%  Similarity=0.198  Sum_probs=69.3

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhh-cCCCcEEEEEeCCChhhHHHHHHHHH------hcCCC--------------CCc--
Q 017143            6 TVKYGIIGMGMMGREHFINLHHL-RSQGVSVVCIADPHLQSRQQALKLAN------AFDWP--------------LKV--   62 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~-~~~~~~~~~v~d~~~~~~~~~~~~~~------~~~~~--------------~~~--   62 (376)
                      +|||||-|.|++|+..++.+.+. ..++++++++-|+..  .+...-+-+      ++..+              ++.  
T Consensus         1 tikigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~~~--~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~g~~i~i~~   78 (173)
T d1obfo1           1 TIRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGD--PKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDA   78 (173)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECSSC--HHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEEC
T ss_pred             CeEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCCCC--hHHHHHhhcccccCCCcCceEEeccceEEECCEEEEEEe
Confidence            48999999999999988876542 247999999999742  222323222      01100              111  


Q ss_pred             cCCHHHHhhC-CCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCC
Q 017143           63 FPGHQELLDS-GLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLC  110 (376)
Q Consensus        63 ~~~~~~~l~~-~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a  110 (376)
                      ..+.+++-.. ..+|+|+-||--....+-+.+-|++|+ |-|++--|..
T Consensus        79 ~~~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~Ga-kkViiSAP~~  126 (173)
T d1obfo1          79 NRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGA-KKVIISAPGG  126 (173)
T ss_dssp             CSCGGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTC-SEEEESSCCC
T ss_pred             cCCHHHCcccccccceEEEecccccCHHHHHHHhccCC-cceEEecCCC
Confidence            2345555443 368999999999888888888888663 6788888765

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.55  E-value=0.0012  Score=46.18  Aligned_cols=87  Identities=17%  Similarity=0.164  Sum_probs=55.2

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCC-HHHHhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPG-HQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~D~V~i~t~~   84 (376)
                      .-||+|+|+|..|...+..|.+.   +.++. ++|.....  ...+..++ +.. ..+.. .++.+.+  +|.|+++.--
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~---g~~v~-~~D~~~~~--~~~~~~~~-~~~-~~~~~~~~~~~~~--~d~vi~SPGi   74 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLAR---GVTPR-VMDTRMTP--PGLDKLPE-AVE-RHTGSLNDEWLMA--ADLIVASPGI   74 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHT---TCCCE-EEESSSSC--TTGGGSCT-TSC-EEESBCCHHHHHH--CSEEEECTTS
T ss_pred             CCEEEEEeECHHHHHHHHHHHHC---CCEEE-EeeCCcCc--hhHHHHhh-ccc-eeecccchhhhcc--CCEEEECCCC
Confidence            34899999999999877777775   77766 45654431  11111111 222 12222 2455554  8999987776


Q ss_pred             CccHHHHHHHHcCCCCCeEE
Q 017143           85 MTHYQILMDIINHPKPHHVL  104 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~~Vl  104 (376)
                      ..+.+.+..|.+  +|..|+
T Consensus        75 ~~~~~~~~~a~~--~gi~ii   92 (93)
T d2jfga1          75 ALAHPSLSAAAD--AGIEIV   92 (93)
T ss_dssp             CTTSHHHHHHHH--TTCEEE
T ss_pred             CCCCHHHHHHHH--cCCCeE
Confidence            666788888999  888874

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=96.55  E-value=0.0051  Score=49.34  Aligned_cols=91  Identities=15%  Similarity=0.107  Sum_probs=59.8

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhc---CCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCc--cCCHHHHhhCCCCCEEEEe
Q 017143            7 VKYGIIGMGMMGREHFINLHHLR---SQGVSVVCIADPHLQSRQQALKLANAFDWPLKV--FPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~---~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~D~V~i~   81 (376)
                      -||+|||.|.-|+.|..+|+...   ..++.|+.-...+..+.++    |++-|+.+..  --+.+|+.+.  .|+|++.
T Consensus        45 KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~k----A~~dGf~v~~~~v~~v~EAv~~--ADiVmiL  118 (226)
T d1qmga2          45 KQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAE----ARAAGFSEENGTLGDMWETISG--SDLVLLL  118 (226)
T ss_dssp             SEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHH----HHHTTCCGGGTCEEEHHHHHHT--CSEEEEC
T ss_pred             CEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHH----HHHcCCccCCCcccCHHHHHhh--CCEEEEe
Confidence            47999999999999998888841   0245554333333333223    3344664211  2367888877  8999999


Q ss_pred             CCCCccHHHHHH---HHcCCCCCeEEE
Q 017143           82 TPNMTHYQILMD---IINHPKPHHVLV  105 (376)
Q Consensus        82 t~~~~h~~~~~~---al~~~~g~~Vl~  105 (376)
                      +|+..|.++-.+   -|+  .|+.+..
T Consensus       119 lPDe~Q~~vy~~I~p~Lk--~G~~L~F  143 (226)
T d1qmga2         119 ISDSAQADNYEKVFSHMK--PNSILGL  143 (226)
T ss_dssp             SCHHHHHHHHHHHHHHSC--TTCEEEE
T ss_pred             cchHHHHHHHHHHHHhcC--CCceeee
Confidence            999999887654   466  6666554

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.55  E-value=0.0064  Score=47.16  Aligned_cols=81  Identities=9%  Similarity=0.067  Sum_probs=51.5

Q ss_pred             eeEEEEeCChhhHHHH-HHhhhhc-CCCcEEEEEeCCChhhHHHHHHHHHh---cCCCCCccCCHHHHhhCCCCCEEEEe
Q 017143            7 VKYGIIGMGMMGREHF-INLHHLR-SQGVSVVCIADPHLQSRQQALKLANA---FDWPLKVFPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~-~~~~~~~-~~~~~~~~v~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~D~V~i~   81 (376)
                      |||+|||+|..|.... ..+.... +....-+.++|.++++.+....+...   ...+....++.++.+++  .|+|+++
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~--aDvVVit   78 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVD--AKYVIFQ   78 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTT--CSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCC--CCEEEEe
Confidence            6899999998775433 2233221 12344456899999976655544432   23333456778888877  7999999


Q ss_pred             CCCCccHH
Q 017143           82 TPNMTHYQ   89 (376)
Q Consensus        82 t~~~~h~~   89 (376)
                      .-...+..
T Consensus        79 a~~~~~~~   86 (162)
T d1up7a1          79 FRPGGLKG   86 (162)
T ss_dssp             CCTTHHHH
T ss_pred             cccCCCCC
Confidence            87665443

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.53  E-value=0.0036  Score=49.02  Aligned_cols=73  Identities=22%  Similarity=0.245  Sum_probs=51.1

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-CCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      -+|.|+|+|..++..+.+|.+.   +.+ +.|+.|+.+   +++++++.+.-. ....-++++... .+.|+|+-|||-.
T Consensus        19 k~vlIlGaGGaarai~~al~~~---g~~-i~I~nRt~~---ka~~l~~~~~~~~~~~~~~~~~~~~-~~~dliIN~Tp~G   90 (170)
T d1nyta1          19 LRILLIGAGGASRGVLLPLLSL---DCA-VTITNRTVS---RAEELAKLFAHTGSIQALSMDELEG-HEFDLIINATSSG   90 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCE-EEEECSSHH---HHHHHHHHTGGGSSEEECCSGGGTT-CCCSEEEECCSCG
T ss_pred             CEEEEECCcHHHHHHHHHhccc---ceE-EEeccchHH---HHHHHHHHHhhcccccccccccccc-cccceeecccccC
Confidence            5899999999999988888886   567 668999988   566666554211 011223444332 4589999999977


Q ss_pred             cc
Q 017143           86 TH   87 (376)
Q Consensus        86 ~h   87 (376)
                      .+
T Consensus        91 ~~   92 (170)
T d1nyta1          91 IS   92 (170)
T ss_dssp             GG
T ss_pred             cc
Confidence            64

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=96.53  E-value=0.0016  Score=51.89  Aligned_cols=128  Identities=11%  Similarity=0.082  Sum_probs=75.1

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc----CCCC--CccCCHHHHhhC-CCCCEEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF----DWPL--KVFPGHQELLDS-GLCDVVV   79 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~l~~-~~~D~V~   79 (376)
                      -+|.|+|+|..|+..+.++...   +++-+.+++|++++.++++.+++++    +..+  ..+.+.+++... .++|+|+
T Consensus        19 k~vlIlGaGGaarai~~al~~~---g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diiI   95 (182)
T d1vi2a1          19 KTMVLLGAGGASTAIGAQGAIE---GLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILT   95 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEE
T ss_pred             CEEEEECCcHHHHHHHHHHhhc---CCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccceec
Confidence            5899999999999888888886   6767778999988777777766553    2211  123344443321 2389999


Q ss_pred             EeCCCCccH----HHH--HHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHH
Q 017143           80 VSTPNMTHY----QIL--MDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVA  144 (376)
Q Consensus        80 i~t~~~~h~----~~~--~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~  144 (376)
                      -|||.....    .+.  ...++  . ..++++=--  ++.+. .+.+.| ++.|..+.-|....-..+..
T Consensus        96 N~Tp~G~~~~~~~~~~~~~~~~~--~-~~~v~Di~Y--~p~~T-~ll~~a-~~~g~~~i~Gl~Mli~Qa~~  159 (182)
T d1vi2a1          96 NGTKVGMKPLENESLVNDISLLH--P-GLLVTECVY--NPHMT-KLLQQA-QQAGCKTIDGYGMLLWQGAE  159 (182)
T ss_dssp             ECSSTTSTTSCSCCSCCCGGGSC--T-TCEEEECCC--SSSSC-HHHHHH-HTTTCEEECHHHHHHHHHHH
T ss_pred             cccCCccccccchhhhhHHHhhh--c-chhhHHhhc--Ccccc-HHHHHH-HHCcCeEeccHHHHHHHHHH
Confidence            999965431    111  12233  2 345555321  21221 355666 34477777766555433333

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.51  E-value=0.0033  Score=47.56  Aligned_cols=73  Identities=23%  Similarity=0.336  Sum_probs=43.9

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHH-HHHHHHH--hcCCCCCc-cCCHHHHhhCCCCCEEEEeC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQ-QALKLAN--AFDWPLKV-FPGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~~--~~~~~~~~-~~~~~~~l~~~~~D~V~i~t   82 (376)
                      |||+|||+|.+|......+...  +-+.-+.++|.++++.+ .+.++..  .+.-.... .+++++ +++  .|+|+|+.
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~--~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~-~~~--adivvita   75 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMK--GFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYAD-LKG--SDVVIVAA   75 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGG-GTT--CSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhC--CCCCEEEEEecccccccchhccccccccccccccccCCcHHH-hcC--CCEEEEec
Confidence            6999999999998766666555  34434558999987442 2222221  12111222 345655 544  79999986


Q ss_pred             CC
Q 017143           83 PN   84 (376)
Q Consensus        83 ~~   84 (376)
                      ..
T Consensus        76 g~   77 (140)
T d1a5za1          76 GV   77 (140)
T ss_dssp             CC
T ss_pred             cc
Confidence            53

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=96.47  E-value=0.0038  Score=47.31  Aligned_cols=72  Identities=18%  Similarity=0.158  Sum_probs=44.3

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHH-HHHHH---HhcCCCC--CccCCHHHHhhCCCCCEEEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQ-ALKLA---NAFDWPL--KVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~---~~~~~~~--~~~~~~~~~l~~~~~D~V~i   80 (376)
                      |||+|||+|.+|......+...  +-+.-+.++|+++++.+. +..+.   ..++...  ...+++++ +++  .|+|+|
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~--~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~-~~d--advvvi   75 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEK--QLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TAN--SDIVII   75 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTT--CSEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhC--CCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHH-hcC--CeEEEE
Confidence            6899999999999877777665  434345589999875421 11211   1122222  22456554 444  799999


Q ss_pred             eCC
Q 017143           81 STP   83 (376)
Q Consensus        81 ~t~   83 (376)
                      +..
T Consensus        76 tag   78 (142)
T d1guza1          76 TAG   78 (142)
T ss_dssp             CCS
T ss_pred             EEe
Confidence            853

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.46  E-value=0.0044  Score=49.29  Aligned_cols=103  Identities=18%  Similarity=0.178  Sum_probs=66.4

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhh--cCCCcEEEEEeCCChhhHHHHHHHHHh---cC---CCCC----------------
Q 017143            6 TVKYGIIGMGMMGREHFINLHHL--RSQGVSVVCIADPHLQSRQQALKLANA---FD---WPLK----------------   61 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~--~~~~~~~~~v~d~~~~~~~~~~~~~~~---~~---~~~~----------------   61 (376)
                      +|||||-|.|+||+..++.+...  ..+.+++++|-|+..+. +...-+-+.   +|   -++.                
T Consensus         2 ~ikigINGFGRIGR~vlR~~~~~~~~~~~i~iv~Ind~~~~~-~~~ayLlkyDSvhG~~~~~v~~~~~~~~~~~~~~~i~   80 (190)
T d1k3ta1           2 PIKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDA-EYFAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLVV   80 (190)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCBTTTEEEEEEEESCCCH-HHHHHHHHEETTTEECSSCEEEECSSTTCSSCCEEEE
T ss_pred             CeEEEEECCChHHHHHHHHHHHcCCCCCCeEEEEEecCCCCH-HHHHHHhhccccccCCCceEEEccCccccccccceEE
Confidence            48999999999999988876543  23689999999875431 123222221   11   1000                


Q ss_pred             ---------ccCCHHHHhhC-CCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCC
Q 017143           62 ---------VFPGHQELLDS-GLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLC  110 (376)
Q Consensus        62 ---------~~~~~~~~l~~-~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a  110 (376)
                               ...+.+++-.. .++|+|+=||--....+.+..-|++|+ |-|++--|..
T Consensus        81 ~g~~i~~~~~~~~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~Ga-kkViiSAP~~  138 (190)
T d1k3ta1          81 NGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGA-RKVVISAPAS  138 (190)
T ss_dssp             TTEEEEEEECCSCGGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTC-SEEEESSCCB
T ss_pred             cCceEEecccCCChhHCCHhhcCCcEEEEecccccccccchhhcccCc-ceeeeccCCc
Confidence                     01122332211 258999999998888888888898663 6788877754

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.44  E-value=0.0065  Score=46.88  Aligned_cols=75  Identities=15%  Similarity=0.152  Sum_probs=47.4

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH-HHHHHHHH---hcCCC-CCccCCHHHHhhCCCCCEEE
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSR-QQALKLAN---AFDWP-LKVFPGHQELLDSGLCDVVV   79 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~---~~~~~-~~~~~~~~~~l~~~~~D~V~   79 (376)
                      ++.||+|||+|.+|......+...  +-+.-+.++|.+++.. ..+..+..   ..+.+ ....++++++ .  +.|+|+
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~--~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~-~--~adiVV   93 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGK--SLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVT-A--NSKIVV   93 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHT--TCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGG-T--TCSEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhc--CCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhc-c--cccEEE
Confidence            357999999999999877777776  4555566899988743 22333321   11222 1223566554 3  379999


Q ss_pred             EeCCC
Q 017143           80 VSTPN   84 (376)
Q Consensus        80 i~t~~   84 (376)
                      ++...
T Consensus        94 itAg~   98 (160)
T d1i0za1          94 VTAGV   98 (160)
T ss_dssp             ECCSC
T ss_pred             EecCC
Confidence            97653

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.43  E-value=0.0045  Score=49.69  Aligned_cols=90  Identities=19%  Similarity=0.113  Sum_probs=57.2

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc----CCH----HHHhhCCCCCEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF----PGH----QELLDSGLCDVV   78 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~----~~~l~~~~~D~V   78 (376)
                      =+|.|+|+|.+|...+...+..   +...+.++|+++++++    +++++|.+ .++    .++    .++.....+|+|
T Consensus        27 ~tVlV~GaG~vGl~a~~~ak~~---ga~~Vi~~d~~~~rl~----~a~~~Ga~-~~~~~~~~~~~~~i~~~t~g~g~D~v   98 (195)
T d1kola2          27 STVYVAGAGPVGLAAAASARLL---GAAVVIVGDLNPARLA----HAKAQGFE-IADLSLDTPLHEQIAALLGEPEVDCA   98 (195)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCSEEEEEESCHHHHH----HHHHTTCE-EEETTSSSCHHHHHHHHHSSSCEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhh---cccceeeecccchhhH----hhhhcccc-EEEeCCCcCHHHHHHHHhCCCCcEEE
Confidence            3789999999998776666555   5555557788887554    44556654 221    233    233334468999


Q ss_pred             EEeCCC---------------CccHHHHHHHHcCCCCCeEEE
Q 017143           79 VVSTPN---------------MTHYQILMDIINHPKPHHVLV  105 (376)
Q Consensus        79 ~i~t~~---------------~~h~~~~~~al~~~~g~~Vl~  105 (376)
                      +-++..               ..+.+.+.++++.+ |+-+++
T Consensus        99 id~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~g-G~v~~~  139 (195)
T d1kola2          99 VDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVA-GKIGIP  139 (195)
T ss_dssp             EECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEE-EEEEEC
T ss_pred             EECccccccCCcccceeecCcHHHHHHHHHHHhcC-CEEEEe
Confidence            988762               34677788888732 444444

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.41  E-value=0.0062  Score=46.07  Aligned_cols=72  Identities=21%  Similarity=0.270  Sum_probs=45.6

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHH-HHHHHHH---hcCCC--CCccCCHHHHhhCCCCCEEEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQ-QALKLAN---AFDWP--LKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~~---~~~~~--~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      |||+|||+|.+|......+...  +-+.-+.++|.++++.+ .+.++..   .++..  +...++++ .+.+  .|+|+|
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~--~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~-~~~~--adiVvi   75 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLN--LDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYS-LLKG--SEIIVV   75 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH--SCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGG-GGTT--CSEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhc--CcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHH-Hhcc--ccEEEE
Confidence            6999999999998777666665  44444568999987532 2233321   12221  23345775 4444  799998


Q ss_pred             eCC
Q 017143           81 STP   83 (376)
Q Consensus        81 ~t~   83 (376)
                      +..
T Consensus        76 tag   78 (142)
T d1ojua1          76 TAG   78 (142)
T ss_dssp             CCC
T ss_pred             ecc
Confidence            775

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.34  E-value=0.0067  Score=45.91  Aligned_cols=74  Identities=14%  Similarity=0.179  Sum_probs=45.5

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHH-HHHHHHH---hcCCC-CCccCCHHHHhhCCCCCEEEE
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQ-QALKLAN---AFDWP-LKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~~---~~~~~-~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      |-||+|||+|.+|...+..+...  +-+.-+.++|.++++.+ .+..+..   ..+.. +...+++++ +.+  .|+|+|
T Consensus         1 p~Ki~IIGaG~VG~~~a~~l~~~--~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~-~~d--aDvVVi   75 (143)
T d1llda1           1 PTKLAVIGAGAVGSTLAFAAAQR--GIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEI-CRD--ADMVVI   75 (143)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGG-GTT--CSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhc--CCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHH-hhC--CcEEEE
Confidence            36899999999999876666554  33433448999887431 2222321   22222 223456665 444  799999


Q ss_pred             eCCC
Q 017143           81 STPN   84 (376)
Q Consensus        81 ~t~~   84 (376)
                      +.-.
T Consensus        76 taG~   79 (143)
T d1llda1          76 TAGP   79 (143)
T ss_dssp             CCCC
T ss_pred             eccc
Confidence            8764

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=96.34  E-value=0.0084  Score=46.63  Aligned_cols=99  Identities=23%  Similarity=0.219  Sum_probs=68.5

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh---cC-------------------CCCCccC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA---FD-------------------WPLKVFP   64 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~---~~-------------------~~~~~~~   64 (376)
                      +||||-|.|++|+..++.+...  +++++++|-|+..  .+...-+-+.   +|                   +.+....
T Consensus         2 ikIgINGfGRIGR~v~R~~l~~--~~~~ivaINd~~d--~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~   77 (171)
T d3cmco1           2 VKVGINGFGRIGRNVFRAALKN--PDIEVVAVNDLTD--ANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAER   77 (171)
T ss_dssp             EEEEEESCSHHHHHHHHHHTTC--TTEEEEEEECSSC--HHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCS
T ss_pred             eEEEEECCCHHHHHHHHHHhhC--CCcEEEEEcCCCC--HHHHhhhhcccccCCcccccccccCCCEEeCCcceeeEecC
Confidence            7999999999999999888776  8999999998753  2333333221   11                   0011123


Q ss_pred             CHHHHhhC-CCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCC
Q 017143           65 GHQELLDS-GLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLC  110 (376)
Q Consensus        65 ~~~~~l~~-~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a  110 (376)
                      +.+++-.. ..+|+|+=||--..-.+-+.+-|+.| -|-|++--|..
T Consensus        78 ~p~~i~W~~~~vDiViEcTG~f~t~~~~~~hl~~g-akkViiSap~~  123 (171)
T d3cmco1          78 DPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAG-AKKVIISAPAK  123 (171)
T ss_dssp             SGGGCCTGGGTCCEEEECSSSCCBHHHHTHHHHTT-CSEEEESSCCB
T ss_pred             CHHHccccccCCcEEEEecCccCCHHHHHHHHhCC-CceEEEecccc
Confidence            44444432 36999999999988888888888865 46788887754

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.28  E-value=0.0026  Score=45.97  Aligned_cols=86  Identities=19%  Similarity=0.262  Sum_probs=53.8

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhh---CCCCCEEEEeC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLD---SGLCDVVVVST   82 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~D~V~i~t   82 (376)
                      ..||||+|.|..|+....+..++   +++++ ++|++++.  .+..++.++-+  .-|+|.+.+.+   ...+|+|.   
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~l---G~~v~-v~d~~~~~--PA~~va~~~i~--~~~~d~~~l~~~~~~~~~DviT---   79 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRL---GVEVI-AVDRYADA--PAMHVAHRSHV--INMLDGDALRRVVELEKPHYIV---   79 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTT---TCEEE-EEESSTTC--GGGGGSSEEEE--CCTTCHHHHHHHHHHHCCSEEE---
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHC---CCEEE-EEcCCCCC--chhhcCCeEEE--CCCCCHHHHHHHHHhhCCceEE---
Confidence            47999999999999999888887   89975 56777653  44455444322  35777776643   22478774   


Q ss_pred             CCCccHHH-HHHHHcCCCCCeE
Q 017143           83 PNMTHYQI-LMDIINHPKPHHV  103 (376)
Q Consensus        83 ~~~~h~~~-~~~al~~~~g~~V  103 (376)
                      ....|... +++.|+. .|+.|
T Consensus        80 ~E~EnI~~~~L~~le~-~g~~v  100 (111)
T d1kjqa2          80 PEIEAIATDMLIQLEE-EGLNV  100 (111)
T ss_dssp             ECSSCSCHHHHHHHHH-TTCEE
T ss_pred             EEecCcCHHHHHHHHH-CCCeE
Confidence            33444322 3344431 45554

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.19  E-value=0.0045  Score=48.35  Aligned_cols=130  Identities=11%  Similarity=0.061  Sum_probs=79.9

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-C--CccCC-HHHHhh---CCCCCEE
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-L--KVFPG-HQELLD---SGLCDVV   78 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~--~~~~~-~~~~l~---~~~~D~V   78 (376)
                      =+|.|+|+ |.+|...+..++..   +...+.++++++++++.++    ++|.+ +  ..-.+ .+++.+   ...+|+|
T Consensus        29 ~~vlV~G~~G~vG~~~~~~~~~~---g~~~V~~~~~~~~~~~~~~----~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~v  101 (170)
T d1jvba2          29 KTLLVVGAGGGLGTMAVQIAKAV---SGATIIGVDVREEAVEAAK----RAGADYVINASMQDPLAEIRRITESKGVDAV  101 (170)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHH---TCCEEEEEESSHHHHHHHH----HHTCSEEEETTTSCHHHHHHHHTTTSCEEEE
T ss_pred             CEEEEEeccccceeeeeeccccc---ccccccccccchhhHHHHH----HcCCceeeccCCcCHHHHHHHHhhcccchhh
Confidence            47999995 99998887777776   4434557788887555444    45543 0  11123 344443   2348999


Q ss_pred             EEeCCCCccHHHHHHHHcCCCCCeEEE---ecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCH-HHHHHHHHHHcCC
Q 017143           79 VVSTPNMTHYQILMDIINHPKPHHVLV---EKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMP-PVAKLIQIVKSGS  154 (376)
Q Consensus        79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~---EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p-~~~~~k~~i~~g~  154 (376)
                      +.|+....-.+.+..+++-+ |+-|++   .+|...+...   +   . .+ ++.+.-.  +.+++ .+..+-+++++|+
T Consensus       102 id~~g~~~~~~~a~~~l~~~-G~iv~~G~~~~~~~~~~~~---~---~-~k-~i~i~Gs--~~~~~~d~~~~l~lv~~GK  170 (170)
T d1jvba2         102 IDLNNSEKTLSVYPKALAKQ-GKYVMVGLFGADLHYHAPL---I---T-LS-EIQFVGS--LVGNQSDFLGIMRLAEAGK  170 (170)
T ss_dssp             EESCCCHHHHTTGGGGEEEE-EEEEECCSSCCCCCCCHHH---H---H-HH-TCEEEEC--CSCCHHHHHHHHHHHHTTS
T ss_pred             hcccccchHHHhhhhhcccC-CEEEEeccccCccccCHHH---H---H-hC-CcEEEEE--ecCCHHHHHHHHHHHHcCC
Confidence            99998877778888888743 555555   4555555443   2   2 12 3444322  22343 4788888888875

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.15  E-value=0.00063  Score=52.69  Aligned_cols=136  Identities=13%  Similarity=0.087  Sum_probs=79.2

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-CCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      .||||||+ |..|...++.|.++.-|..++..+++.+..    .+.+.  +..+ .......+..+  .+.|.|+.++|+
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~----G~~~~--~~~~~~~~~~~~~~~~--~~~d~~f~~~~~   73 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSA----GKSLK--FKDQDITIEETTETAF--EGVDIALFSAGS   73 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGT----TCEEE--ETTEEEEEEECCTTTT--TTCSEEEECSCH
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccc----ccccc--ccCCcccccccchhhh--hhhhhhhhccCc
Confidence            58999996 999999999887772246777776653221    11111  1111 01112222222  348999999999


Q ss_pred             CccHHHHHHHHcCCCCCeEEE---------ecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCC
Q 017143           85 MTHYQILMDIINHPKPHHVLV---------EKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSI  155 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~~Vl~---------EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~i  155 (376)
                      ....+.+.++++  +|..|+=         +.|..  ..|.   .....++.+ .+..+.++ |.-.+..++-+++.|.|
T Consensus        74 ~~s~~~~~~~~~--~~~~VIDlSsdfR~~~~~~~~--~pe~---n~~~~~~~~-~iIAnPgC-~tt~i~~l~PL~~~~li  144 (154)
T d2gz1a1          74 STSAKYAPYAVK--AGVVVVDNTSYFRQNPDVPLV--VPEV---NAHALDAHN-GIIACPNA-AWNSVQIAETLHERGLV  144 (154)
T ss_dssp             HHHHHHHHHHHH--TTCEEEECSSTTTTCTTSCBC--CHHH---HGGGGGGCC-SEEECCCT-HHHHHHHHHHHHHTTCC
T ss_pred             cchhhHHhhhcc--ccceehhcChhhhccCCcccc--cchh---hHHHhcCcC-ceEECCCC-HHHHHHHHHHHHHhcCC
Confidence            988999999999  7777754         12322  2222   122212212 23344444 65566667778888777


Q ss_pred             CceE
Q 017143          156 GQVK  159 (376)
Q Consensus       156 G~i~  159 (376)
                      -...
T Consensus       145 k~~~  148 (154)
T d2gz1a1         145 RPTA  148 (154)
T ss_dssp             SCCS
T ss_pred             Cccc
Confidence            6553

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=96.13  E-value=0.0098  Score=46.19  Aligned_cols=97  Identities=26%  Similarity=0.349  Sum_probs=65.0

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh---cC-CC------------------CCccC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA---FD-WP------------------LKVFP   64 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~---~~-~~------------------~~~~~   64 (376)
                      |||||-|+|+||+..++.+..   +++++++|-|+...  +...-+-+.   || ++                  +....
T Consensus         1 ikigINGfGRIGR~~~R~l~~---~~i~iv~INd~~~~--~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~   75 (168)
T d2g82a1           1 MKVGINGFGRIGRQVFRILHS---RGVEVALINDLTDN--KTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVK   75 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH---HTCCEEEEECSSCH--HHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCS
T ss_pred             CEEEEECCcHHHHHHHHHHhc---CCCEEEEECCCcch--hhhhheeecccccCccccccccccceeEecceeEEEEecC
Confidence            699999999999998887655   58999999998532  233333221   11 00                  00112


Q ss_pred             CHHHHhhC-CCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCC
Q 017143           65 GHQELLDS-GLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPL  109 (376)
Q Consensus        65 ~~~~~l~~-~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~  109 (376)
                      +.+++-.. .++|+|+=||--....+.+..-++.| -|-|++--|.
T Consensus        76 ~p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~g-akkViiSAP~  120 (168)
T d2g82a1          76 DPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGG-AKKVIITAPA  120 (168)
T ss_dssp             SGGGCCTGGGTEEEEEECSSSCCBHHHHTHHHHTT-CSEEEESSCC
T ss_pred             ChHHCcccccCCceeEeccccccchHHhhhhhccc-cceeeecccc
Confidence            23333332 35899999999999999998888866 4678887775

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.08  E-value=0.0062  Score=48.52  Aligned_cols=63  Identities=29%  Similarity=0.325  Sum_probs=46.7

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      ..+|||||+|.+|+...+.+...   +.++.+ +|+....   .     ...  ...+.+++++++.  .|+|+++.|-
T Consensus        44 ~~~vgiiG~G~IG~~va~~l~~f---g~~v~~-~d~~~~~---~-----~~~--~~~~~~l~ell~~--sDii~i~~pl  106 (188)
T d1sc6a1          44 GKKLGIIGYGHIGTQLGILAESL---GMYVYF-YDIENKL---P-----LGN--ATQVQHLSDLLNM--SDVVSLHVPE  106 (188)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT---TCEEEE-ECSSCCC---C-----CTT--CEECSCHHHHHHH--CSEEEECCCS
T ss_pred             ceEEEEeecccchhhhhhhcccc---cceEee-ccccccc---h-----hhh--hhhhhhHHHHHhh--ccceeecccC
Confidence            46999999999999888777665   889775 5665431   0     011  1356789999998  7999999883

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=95.98  E-value=0.01  Score=44.95  Aligned_cols=72  Identities=19%  Similarity=0.214  Sum_probs=44.8

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHH-HHHHHHH---hcCCCC-CccCCHHHHhhCCCCCEEEEe
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQ-QALKLAN---AFDWPL-KVFPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~~---~~~~~~-~~~~~~~~~l~~~~~D~V~i~   81 (376)
                      -||+|||+|.+|...+..+...  .-..-+.++|+++++.+ .+.++..   .++.+. ...++++++ ++  .|+|+|+
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~--~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l-~~--adiVVit   76 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQ--GVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAAL-AD--ADVVIST   76 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGG-TT--CSEEEEC
T ss_pred             CeEEEECcCHHHHHHHHHHHhc--CCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHh-cc--ccEEEEe
Confidence            4899999999998777766665  33333448999987532 2223321   233331 223566664 44  7999998


Q ss_pred             CC
Q 017143           82 TP   83 (376)
Q Consensus        82 t~   83 (376)
                      ..
T Consensus        77 aG   78 (146)
T d1hyha1          77 LG   78 (146)
T ss_dssp             CS
T ss_pred             cc
Confidence            65

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.91  E-value=0.036  Score=42.97  Aligned_cols=84  Identities=13%  Similarity=0.002  Sum_probs=50.7

Q ss_pred             ceeEEEEeCChhhH--HHHHHhhhhcCCCcEEEEEeCCChhh--HHHHHH----HHHhcCCC--CCccCCHHHHhhCCCC
Q 017143            6 TVKYGIIGMGMMGR--EHFINLHHLRSQGVSVVCIADPHLQS--RQQALK----LANAFDWP--LKVFPGHQELLDSGLC   75 (376)
Q Consensus         6 ~~~v~iiG~G~~g~--~~~~~~~~~~~~~~~~~~v~d~~~~~--~~~~~~----~~~~~~~~--~~~~~~~~~~l~~~~~   75 (376)
                      ++||+|||+|..|.  .....++....-...-+.++|+++++  .+....    ...+++.+  ...++|..+.+++  .
T Consensus         1 k~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~g--a   78 (169)
T d1s6ya1           1 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDG--A   78 (169)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT--C
T ss_pred             CcEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCC--C
Confidence            58999999997654  33333344311123345688998753  222221    12344555  3456788888876  7


Q ss_pred             CEEEEeCCCCccHHHH
Q 017143           76 DVVVVSTPNMTHYQIL   91 (376)
Q Consensus        76 D~V~i~t~~~~h~~~~   91 (376)
                      |+|+++.....+....
T Consensus        79 DvVv~ta~~~~~~~~~   94 (169)
T d1s6ya1          79 DFVTTQFRVGGLEARA   94 (169)
T ss_dssp             SEEEECCCTTHHHHHH
T ss_pred             CEEEEccccCCCCCee
Confidence            9999999876554443

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=95.87  E-value=0.0092  Score=46.31  Aligned_cols=98  Identities=20%  Similarity=0.255  Sum_probs=64.7

Q ss_pred             eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH---hcCC---CC--------------Cc--cCC
Q 017143            8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN---AFDW---PL--------------KV--FPG   65 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~---~~~~---~~--------------~~--~~~   65 (376)
                      ||||-|.|++|+..++.+...   +++++++-|+..+. +...-+-+   -+|.   ++              +.  ..+
T Consensus         2 kIgINGfGRIGR~~~R~~~~~---~~~ivaINd~~~~~-~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~   77 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEM---GAQVVAVNDPFIAL-EYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMK   77 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHH---TCCEEEEECTTSCH-HHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSS
T ss_pred             eEEEECCcHHHHHHHHHHHhC---CCcEEEECCCCcCH-HHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCC
Confidence            899999999999998888775   58999999965432 12222222   1110   00              01  123


Q ss_pred             HHHHhhC-CCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCC
Q 017143           66 HQELLDS-GLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLC  110 (376)
Q Consensus        66 ~~~~l~~-~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a  110 (376)
                      .+++-.. ..+|+|+=||--..-.+-+..-|+.| -|-|++-.|..
T Consensus        78 p~~i~W~~~gvD~ViEcTG~f~~~~~~~~hl~~g-akkViisaP~~  122 (169)
T d1dssg1          78 PENIPWSKAGAEYIVESTGVFTTIEKASAHFKGG-AKKVIISAPSA  122 (169)
T ss_dssp             GGGCCHHHHTCCEEEECSSSCCSHHHHGGGGTTT-CSEEEESSCCS
T ss_pred             hHHCCccccCCCEEEecCceEcCHHHHHHHHhcC-CceEeecCCcc
Confidence            3333221 25899999999888888888888866 46788888853

>d1qkia1 c.2.1.3 (A:12-199,A:435-449) Glucose 6-phosphate dehydrogenase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose 6-phosphate dehydrogenase, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.81  E-value=0.072  Score=42.40  Aligned_cols=120  Identities=13%  Similarity=0.191  Sum_probs=68.4

Q ss_pred             CceeEEEEeC-ChhhH-HHHHHhhhhc-----CCCcEEEEEeCCChhhH-----------------HHHHHHHHhcCCCC
Q 017143            5 DTVKYGIIGM-GMMGR-EHFINLHHLR-----SQGVSVVCIADPHLQSR-----------------QQALKLANAFDWPL   60 (376)
Q Consensus         5 ~~~~v~iiG~-G~~g~-~~~~~~~~~~-----~~~~~~~~v~d~~~~~~-----------------~~~~~~~~~~~~~~   60 (376)
                      .+.-+.|+|+ |-.++ ..+|+|-++-     ++++.|+|+.-.+-+..                 ....++.++...-.
T Consensus        19 ~~~t~VIFGatGDLA~RKL~PALf~L~~~g~Lp~~~~Iig~aR~~~s~e~fr~~~~~~~~~~~~~~~~~~~f~~~~~Y~~   98 (203)
T d1qkia1          19 DTHIFIIMGASGDLAKKKIYPTIWWLFRDGLLPENTFIVGYARSRLTVADIRKQSEPFFKATPEEKLKLEDFFARNSYVA   98 (203)
T ss_dssp             CCEEEEEETTTSHHHHHTHHHHHHHHHHTTCSCSSEEEEEEBSSCCSCHHHHHHHSCCTTCCGGGHHHHHHHHTTEECCB
T ss_pred             CCcEEEEECcccHHHHhHHHHHHHHHHHcCCCCCCcEEEEEECCCCCHHHHHHHHHHHHhhchhhHHHHHHHHHhhcccc
Confidence            4677999995 66665 5788875551     35899999873322111                 11122222211100


Q ss_pred             CccCCH------HHHhhC-----CCCCEEEEeCCCCccHHHHHHHHcCC---CC-CeEEEecCCCCCHHHHHHHHHHHH
Q 017143           61 KVFPGH------QELLDS-----GLCDVVVVSTPNMTHYQILMDIINHP---KP-HHVLVEKPLCTTVADCKKVVDAAR  124 (376)
Q Consensus        61 ~~~~~~------~~~l~~-----~~~D~V~i~t~~~~h~~~~~~al~~~---~g-~~Vl~EKP~a~~~~e~~~l~~~a~  124 (376)
                      .-|++.      .+.+..     ...-+.++++||..=..++...-+.|   .| .-|.+|||++.+.+.|++|-+...
T Consensus        99 ~d~~~~~~~~~L~~~l~~~~~~~~~~rifYLAvpP~~f~~i~~~L~~~~l~~~~~~RiVvEKPfG~Dl~SA~~Ln~~l~  177 (203)
T d1qkia1          99 GQYDDAASYQRLNSHMNALHLGSQANRLFYLALPPTVYEAVTKNIHESCMSQIGWNRIIVEKPFGRDLQSSDRLSNHIS  177 (203)
T ss_dssp             CCTTCHHHHHHHHHHHHHTTTTTTSEEEEEECSCHHHHHHHHHHHHHHSCCSSSCEEEEESCCCCSCHHHHHHHHHHHH
T ss_pred             CcCCChhhHHHHHHHHHHHhcCCCcceEEEEecCHHHHHHHHHHHHHhcCCccCceeEEEecCCCCChHHHHHHHHHHH
Confidence            112332      222322     12347889999887544443331211   23 359999999999999999988874

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.023  Score=43.54  Aligned_cols=65  Identities=15%  Similarity=0.162  Sum_probs=48.4

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      -+++|+|.|++|+.....++..   +.+++ |+|++|-+  .+++  ...|+.   ..+.++++..  .|+|+.+|.+
T Consensus        25 k~v~V~GyG~iG~g~A~~~rg~---G~~V~-v~e~dp~~--al~A--~~dG~~---v~~~~~a~~~--adivvtaTGn   89 (163)
T d1li4a1          25 KVAVVAGYGDVGKGCAQALRGF---GARVI-ITEIDPIN--ALQA--AMEGYE---VTTMDEACQE--GNIFVTTTGC   89 (163)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCEEE-EECSCHHH--HHHH--HHTTCE---ECCHHHHTTT--CSEEEECSSC
T ss_pred             CEEEEeccccccHHHHHHHHhC---CCeeE-eeecccch--hHHh--hcCceE---eeehhhhhhh--ccEEEecCCC
Confidence            4799999999999998888887   78866 79999863  2222  233543   3468888877  7988888774

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=95.78  E-value=0.004  Score=48.84  Aligned_cols=74  Identities=15%  Similarity=0.163  Sum_probs=46.9

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC-CHHHHhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP-GHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~D~V~i~t~~   84 (376)
                      .-+|.|+|+|..++..+.+|...   ..+ +.|+.|+.+   +++++++.++....... ++++ ....+.|+|+-|||-
T Consensus        18 ~k~vlIlGaGGaarai~~aL~~~---~~~-i~I~nR~~~---~a~~l~~~~~~~~~~~~~~~~~-~~~~~~diiIN~tp~   89 (171)
T d1p77a1          18 NQHVLILGAGGATKGVLLPLLQA---QQN-IVLANRTFS---KTKELAERFQPYGNIQAVSMDS-IPLQTYDLVINATSA   89 (171)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHT---TCE-EEEEESSHH---HHHHHHHHHGGGSCEEEEEGGG-CCCSCCSEEEECCCC
T ss_pred             CCEEEEECCcHHHHHHHHHHccc---Cce-eeeccchHH---HHHHHHHHHhhccccchhhhcc-ccccccceeeecccc
Confidence            35899999999999888777764   356 448899987   56666665532111111 1222 233468999999997


Q ss_pred             Ccc
Q 017143           85 MTH   87 (376)
Q Consensus        85 ~~h   87 (376)
                      ...
T Consensus        90 g~~   92 (171)
T d1p77a1          90 GLS   92 (171)
T ss_dssp             ---
T ss_pred             ccc
Confidence            643

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.70  E-value=0.0063  Score=48.26  Aligned_cols=37  Identities=19%  Similarity=0.469  Sum_probs=31.3

Q ss_pred             eeEEEE-eCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHH
Q 017143            7 VKYGII-GMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQ   47 (376)
Q Consensus         7 ~~v~ii-G~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~   47 (376)
                      |||+|| |+|.||......|++.   +.+|+ +++|++++.+
T Consensus         1 Mki~vigGaG~iG~alA~~la~~---G~~V~-l~~R~~e~~~   38 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATL---GHEIV-VGSRREEKAE   38 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTT---TCEEE-EEESSHHHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHC---CCEEE-EEECCHHHHH
Confidence            689999 7999999999999885   88977 6799998543

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.68  E-value=0.019  Score=43.59  Aligned_cols=73  Identities=22%  Similarity=0.153  Sum_probs=43.2

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHH-HHHHHH---HhcCCCCCc--cCCHHHHhhCCCCCEEE
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQ-QALKLA---NAFDWPLKV--FPGHQELLDSGLCDVVV   79 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~---~~~~~~~~~--~~~~~~~l~~~~~D~V~   79 (376)
                      +.||+|||+|.+|......+...  .-.+ +.++|++++..+ .+..+.   ...+.+...  .++++++ .+  .|+|+
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~--~l~e-l~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~-~~--advvv   76 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQK--NLGD-VVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDL-AG--ADVVI   76 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCCE-EEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGG-TT--CSEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC--CCCe-EEEEeccCCcceeeecchhhhccccCCCcEEEeccccccc-CC--CcEEE
Confidence            57999999999998655545443  3345 559999887432 222221   112333112  3455555 33  79999


Q ss_pred             EeCCC
Q 017143           80 VSTPN   84 (376)
Q Consensus        80 i~t~~   84 (376)
                      ++..-
T Consensus        77 itag~   81 (150)
T d1t2da1          77 VTAGF   81 (150)
T ss_dssp             ECCSC
T ss_pred             Eeccc
Confidence            98763

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=95.59  E-value=0.019  Score=43.19  Aligned_cols=74  Identities=22%  Similarity=0.178  Sum_probs=45.6

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHH-HHHHHH---HhcCCC--CCccCCHHHHhhCCCCCEEEE
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQ-QALKLA---NAFDWP--LKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~---~~~~~~--~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      -||+|||+|.+|......+...  +-.+ +.++|.+++..+ .+..+.   ...+..  +...++++++ ++  .|+|+|
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~--~l~d-l~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~~-~~--advvvi   75 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAK--ELGD-IVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADT-AN--SDVIVV   75 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH--TCSE-EEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGG-TT--CSEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhC--Ccce-EEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHHh-cC--CCEEEE
Confidence            4999999999998766666655  4457 446898887432 223331   111222  2235678875 33  799999


Q ss_pred             eCCCCc
Q 017143           81 STPNMT   86 (376)
Q Consensus        81 ~t~~~~   86 (376)
                      +.....
T Consensus        76 tag~~~   81 (142)
T d1uxja1          76 TSGAPR   81 (142)
T ss_dssp             CCSCC-
T ss_pred             eeeccC
Confidence            986443

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=95.56  E-value=0.011  Score=44.69  Aligned_cols=72  Identities=19%  Similarity=0.403  Sum_probs=40.7

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH-HHHHHHHHhcCC--CCCcc-CCHHHHhhCCCCCEEEEeC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSR-QQALKLANAFDW--PLKVF-PGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~~~~~--~~~~~-~~~~~~l~~~~~D~V~i~t   82 (376)
                      -||+|||+|.+|......+...  +-+.-+.++|+++++. ..+.++..-..+  ....+ .+++++ +  +.|+|+++.
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~--~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~-~--~adivvita   76 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALR--QTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDV-K--DCDVIVVTA   76 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT--TCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGG-T--TCSEEEECC
T ss_pred             CeEEEECCCHHHHHHHHHHHhc--CCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHh-C--CCceEEEec
Confidence            4899999999999877666665  4444456899988742 233333321111  11223 345443 3  379999985


Q ss_pred             C
Q 017143           83 P   83 (376)
Q Consensus        83 ~   83 (376)
                      .
T Consensus        77 g   77 (142)
T d1y6ja1          77 G   77 (142)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=95.36  E-value=0.009  Score=47.42  Aligned_cols=41  Identities=20%  Similarity=0.332  Sum_probs=32.2

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHH
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALK   51 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~   51 (376)
                      -||+|||+|.||......++..   +++++ ++|++++.++++.+
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~---G~~V~-l~D~~~~~l~~~~~   45 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASK---GTPIL-MKDINEHGIEQGLA   45 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHT---TCCEE-EECSSHHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhC---CCeEE-EEECCHHHHhhhhh
Confidence            4699999999999877666664   88866 79999987665543

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=95.19  E-value=0.0011  Score=48.28  Aligned_cols=100  Identities=13%  Similarity=0.154  Sum_probs=67.2

Q ss_pred             CceeEEEEeCCh--hhH---------HHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCC
Q 017143            5 DTVKYGIIGMGM--MGR---------EHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSG   73 (376)
Q Consensus         5 ~~~~v~iiG~G~--~g~---------~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   73 (376)
                      .+-||.|||+|.  +|+         ..+.+|++   .+++.+ +.+.+|+....-..++.+.-+.+-.+.+..+.++..
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~---~g~~~I-liN~NPeTVstd~d~aD~lYfeplt~e~v~~Ii~~E   78 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALRE---DGYETI-MVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIE   78 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHH---TTCEEE-EECCCTTSSTTSTTSSSEEECCCCSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHh---cCCeEE-EEecChhhhhcChhhcCceEEccCCHHHHHHHHHHh
Confidence            456999999987  342         44445555   589977 678888854322333333333324445677778878


Q ss_pred             CCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHH
Q 017143           74 LCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVAD  115 (376)
Q Consensus        74 ~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e  115 (376)
                      .||.|++.-.-+.-..++...-+  .|..|     +.++++.
T Consensus        79 ~p~~ii~~~GGQtalnla~~L~~--~gv~i-----LGt~~~~  113 (121)
T d1a9xa4          79 KPKGVIVQYGGQTPLKLARALEA--AGVPV-----IGTSPDA  113 (121)
T ss_dssp             CCSEEECSSSTHHHHTTHHHHHH--TTCCB-----CSSCHHH
T ss_pred             CCCEEEeehhhhhHHHHHHHHHH--cCCcE-----ECCCHHH
Confidence            89999999888888888888888  77665     4555544

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.05  E-value=0.031  Score=42.49  Aligned_cols=94  Identities=9%  Similarity=0.148  Sum_probs=56.0

Q ss_pred             eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCC--HHHHhhC---CCCCEEEEeC
Q 017143            8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPG--HQELLDS---GLCDVVVVST   82 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~---~~~D~V~i~t   82 (376)
                      .|.|+|+|..|...+..|.+.   +.+++ |.+.++++.....+-....|+. -.+.|  -.+.|++   .+.|+|+++|
T Consensus         5 HiII~G~g~~g~~l~~~L~~~---~~~v~-vId~d~~~~~~~~~~~~~~~~~-vi~Gd~~d~~~L~~a~i~~a~~vi~~~   79 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQR---GQNVT-VISNLPEDDIKQLEQRLGDNAD-VIPGDSNDSSVLKKAGIDRCRAILALS   79 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT---TCCEE-EEECCCHHHHHHHHHHHCTTCE-EEESCTTSHHHHHHHTTTTCSEEEECS
T ss_pred             EEEEECCCHHHHHHHHHHHHc---CCCEE-EEeccchhHHHHHHHhhcCCcE-EEEccCcchHHHHHhccccCCEEEEcc
Confidence            589999999999999888775   66766 4566765322111112223554 22322  1334442   4589999999


Q ss_pred             CCCccHHHHHHHHcC-CCCCeEEEe
Q 017143           83 PNMTHYQILMDIINH-PKPHHVLVE  106 (376)
Q Consensus        83 ~~~~h~~~~~~al~~-~~g~~Vl~E  106 (376)
                      +++..--.+...++. +...+|+++
T Consensus        80 ~~d~~n~~~~~~~r~~~~~~~iia~  104 (153)
T d1id1a_          80 DNDADNAFVVLSAKDMSSDVKTVLA  104 (153)
T ss_dssp             SCHHHHHHHHHHHHHHTSSSCEEEE
T ss_pred             ccHHHHHHHHHHHHHhCCCCceEEE
Confidence            987665554444331 134567765

>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: 10-formyltetrahydrofolate dehydrogenase domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.96  E-value=0.017  Score=46.42  Aligned_cols=76  Identities=16%  Similarity=0.125  Sum_probs=51.5

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh--hhHHHHHHHHHhcCCCCCccC----------CHHHHhhCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL--QSRQQALKLANAFDWPLKVFP----------GHQELLDSGL   74 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~--~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~~   74 (376)
                      |||+++|.+.+|...+..|.+.   +++|++|+...+  .+.....+++.+.++++..+.          +.-+.+.+.+
T Consensus         1 MkI~~~G~~~~~~~~l~~L~~~---~~~i~~V~t~p~~~~~~~~v~~~a~~~~ipv~~~~~~~~~~~~~~~~~~~l~~~~   77 (203)
T d2bw0a2           1 MKIAVIGQSLFGQEVYCHLRKE---GHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKGQALPDVVAKYQALG   77 (203)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHT---TCEEEEEEECCCCSSCCCHHHHHHHHHTCCEEECSCCEETTEECHHHHHHHHTTC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHC---CCcEEEEEcCCCcCcCCChhhhhHHhcCCcccccccccccccccHHHHHHHHHhC
Confidence            6999999999999888888764   899999985211  111245667778888721111          2334456667


Q ss_pred             CCEEEEeCCCC
Q 017143           75 CDVVVVSTPNM   85 (376)
Q Consensus        75 ~D~V~i~t~~~   85 (376)
                      +|+++++.-..
T Consensus        78 ~Dliv~~~~~~   88 (203)
T d2bw0a2          78 AELNVLPFCSQ   88 (203)
T ss_dssp             CSEEEESSCSS
T ss_pred             CCceEEeecch
Confidence            99999887654

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=94.91  E-value=0.0029  Score=46.48  Aligned_cols=92  Identities=15%  Similarity=0.169  Sum_probs=64.9

Q ss_pred             CCCC-CceeEEEEeCCh--hh---------HHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHH
Q 017143            1 MAAN-DTVKYGIIGMGM--MG---------REHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQE   68 (376)
Q Consensus         1 m~~~-~~~~v~iiG~G~--~g---------~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (376)
                      ||.. +.-||.|||+|.  +|         .+.+.+|++.   +++++ +.+.++++...-..++.+.-+.+-...+..+
T Consensus         1 mp~~~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~---g~~~i-liN~NP~TVstd~d~aD~lYfePlt~e~v~~   76 (127)
T d1a9xa3           1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREE---GYRVI-NVNSNPATIMTDPEMADATYIEPIHWEVVRK   76 (127)
T ss_dssp             CCCCSSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHH---TCEEE-EECSCTTCGGGCGGGSSEEECSCCCHHHHHH
T ss_pred             CCCCCCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHc---CCeEE-EecCchHhhhcChhhcceeeeecCCHHHHHH
Confidence            6654 457999999987  34         2455566665   89966 6788888654333444444443345577888


Q ss_pred             HhhCCCCCEEEEeCCCCccHHHHHHHHc
Q 017143           69 LLDSGLCDVVVVSTPNMTHYQILMDIIN   96 (376)
Q Consensus        69 ~l~~~~~D~V~i~t~~~~h~~~~~~al~   96 (376)
                      +++..+||.|+..-.-+.-..++.+..+
T Consensus        77 Ii~~E~pd~il~~~GGQtalnla~~L~~  104 (127)
T d1a9xa3          77 IIEKERPDAVLPTMGGQTALNCALELER  104 (127)
T ss_dssp             HHHHHCCSEEECSSSHHHHHHHHHHHHH
T ss_pred             HHHHhCcCCeEEEeeeehHhHHHHHHHH
Confidence            8988889999998888888888888776

>d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I DAHP synthetase
domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG)
species: Thermotoga maritima [TaxId: 2336]

Probab=94.90  E-value=0.07  Score=45.91  Aligned_cols=88  Identities=8%  Similarity=0.106  Sum_probs=68.8

Q ss_pred             hhHHHHHHHHHhcCCCC----CccCCHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHH
Q 017143           44 QSRQQALKLANAFDWPL----KVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKV  119 (376)
Q Consensus        44 ~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l  119 (376)
                      +.++..++..+++|+++    +-..+.+.+.+.  +|++-|.+-...+.+++.++-+  -||+|++-|+...+++|....
T Consensus       145 ~gL~~l~~~k~~~glpvvTdV~~~~~~~~~~e~--~DilQI~A~~~~n~~LL~~~g~--t~kpV~lKkG~~~s~~e~l~a  220 (338)
T d1vr6a1         145 KGLEYLREAADKYGMYVVTEALGEDDLPKVAEY--ADIIQIGARNAQNFRLLSKAGS--YNKPVLLKRGFMNTIEEFLLS  220 (338)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHH--CSEEEECGGGTTCHHHHHHHHT--TCSCEEEECCTTCCHHHHHHH
T ss_pred             HHHHHHHHHHhhcCceeEEeccchhhhhhhhce--eeeEEechhhccCHHHHHHhhc--cCCcEEecCccccchhhhhhh
Confidence            44566778888999981    223345666655  8999999999999999999999  889999999999999998887


Q ss_pred             HHHHHhCCCeEEEEee
Q 017143          120 VDAARKRPDILVQVGL  135 (376)
Q Consensus       120 ~~~a~~~~~~~~~v~~  135 (376)
                      .+.....++-.++...
T Consensus       221 ae~i~~~Gn~~vilcE  236 (338)
T d1vr6a1         221 AEYIANSGNTKIILCE  236 (338)
T ss_dssp             HHHHHHTTCCCEEEEE
T ss_pred             HHHHHhcCCccceeee
Confidence            7776566555555443

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.67  E-value=0.049  Score=40.94  Aligned_cols=70  Identities=23%  Similarity=0.217  Sum_probs=43.8

Q ss_pred             eEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC---C---CccCCHHHHhhCCCCCEEEE
Q 017143            8 KYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP---L---KVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         8 ~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~l~~~~~D~V~i   80 (376)
                      ||+|||+ |.+|......+...  +-+.-+.++|.++.+ ..+..+.  +...   .   ...+++.+.+++  .|+|+|
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~--~~~~elvLiDi~~~~-~~a~Dl~--~~~~~~~~~~~~~~~~~~~~~~~--aDivVi   74 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNS--PLVSRLTLYDIAHTP-GVAADLS--HIETRATVKGYLGPEQLPDCLKG--CDVVVI   74 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTC--TTCSEEEEEESSSHH-HHHHHHT--TSSSSCEEEEEESGGGHHHHHTT--CSEEEE
T ss_pred             eEEEECCCChHHHHHHHHHHhC--CccceEEEEeccccc-hhhHHHh--hhhhhcCCCeEEcCCChHHHhCC--CCEEEE
Confidence            8999995 99998877777665  555556688987652 2233332  1111   0   112455666765  899998


Q ss_pred             eCCC
Q 017143           81 STPN   84 (376)
Q Consensus        81 ~t~~   84 (376)
                      +...
T Consensus        75 tag~   78 (144)
T d1mlda1          75 PAGV   78 (144)
T ss_dssp             CCSC
T ss_pred             CCCc
Confidence            8653

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.44  E-value=0.017  Score=45.69  Aligned_cols=136  Identities=19%  Similarity=0.215  Sum_probs=75.6

Q ss_pred             eEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-CC--ccCCHHHHhhC---CCCCEEEE
Q 017143            8 KYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LK--VFPGHQELLDS---GLCDVVVV   80 (376)
Q Consensus         8 ~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~l~~---~~~D~V~i   80 (376)
                      .|.|.| +|.+|...+...+..   +.+.+..++.+++   +..+++.++|.+ +-  .-+++.+.+..   ..+|+|+-
T Consensus        33 tVLI~gaaGgVG~~aiQlak~~---Ga~~vi~~~~~~e---~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D  106 (187)
T d1vj1a2          33 TMVVSGAAGACGSLAGQIGHLL---GCSRVVGICGTQE---KCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFD  106 (187)
T ss_dssp             EEEESSTTSTTGGGHHHHHHHT---TCSEEEEEESSHH---HHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEE
T ss_pred             EEEEECCCchhhHHHHHHHHHc---CCcceecccchHH---HHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEe
Confidence            477777 599998877766655   5554444444444   445566677765 11  12345555443   45899999


Q ss_pred             eCCCCccHHHHHHHHcCCCCCeEEE--------ecCCCCCHHHHHHHHHHHHhCCCeEEE----EeeccccCHHHHHHHH
Q 017143           81 STPNMTHYQILMDIINHPKPHHVLV--------EKPLCTTVADCKKVVDAARKRPDILVQ----VGLEYRYMPPVAKLIQ  148 (376)
Q Consensus        81 ~t~~~~h~~~~~~al~~~~g~~Vl~--------EKP~a~~~~e~~~l~~~a~~~~~~~~~----v~~~~r~~p~~~~~k~  148 (376)
                      ++.. .+.+....+++. .|+-|.|        +.|............ .. .+ ++.+.    ..+..+|......+-+
T Consensus       107 ~vGg-~~~~~~~~~l~~-~G~iv~~G~~s~~~~~~~~~~~~~~~~~~~-~~-~k-~i~~~g~~~~~~~~~~~e~~~~l~~  181 (187)
T d1vj1a2         107 NVGG-DISNTVISQMNE-NSHIILCGQISQYNKDVPYPPPLPPAVEAI-RK-ER-NITRERFTVLNYKDKFEPGILQLSQ  181 (187)
T ss_dssp             SSCH-HHHHHHHTTEEE-EEEEEEC------------CCCCCHHHHHH-HH-HT-TCEEEECCGGGCGGGHHHHHHHHHH
T ss_pred             cCCc-hhHHHHhhhccc-cccEEEeccccccccccccCCchHHHHHHH-HH-hc-ceEEEEeEecchHHHHHHHHHHHHH
Confidence            8873 567777888874 3666654        233332222222221 22 22 33321    1233556677788888


Q ss_pred             HHHcCC
Q 017143          149 IVKSGS  154 (376)
Q Consensus       149 ~i~~g~  154 (376)
                      ++++|+
T Consensus       182 ~i~~Gk  187 (187)
T d1vj1a2         182 WFKEGK  187 (187)
T ss_dssp             HHHHTS
T ss_pred             HHHCcC
Confidence            888875

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.27  E-value=0.11  Score=38.84  Aligned_cols=36  Identities=19%  Similarity=0.212  Sum_probs=26.4

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChh
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQ   44 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~   44 (376)
                      |||+|||+ |.+|......+...  +-+.-+.++|+++.
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~--~l~~el~L~D~~~~   37 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKE--PFMKDLVLIGREHS   37 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTC--TTCCEEEEEECGGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhC--Ccccccccccchhh
Confidence            68999995 99999876666665  44444558888763

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=94.24  E-value=0.052  Score=41.28  Aligned_cols=76  Identities=9%  Similarity=0.180  Sum_probs=42.8

Q ss_pred             CceeEEEEeC-ChhhHHHHHHhhhhc--CC-CcEEEEEeCCChhhHHHHHHHHHhc---CCC----CCccCCHHHHhhCC
Q 017143            5 DTVKYGIIGM-GMMGREHFINLHHLR--SQ-GVSVVCIADPHLQSRQQALKLANAF---DWP----LKVFPGHQELLDSG   73 (376)
Q Consensus         5 ~~~~v~iiG~-G~~g~~~~~~~~~~~--~~-~~~~~~v~d~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~l~~~   73 (376)
                      +++||+|||+ |.+|...+..++...  +. ..-...+.+.+.. .++++..+...   ..+    ...+++..+.+++ 
T Consensus         3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   80 (154)
T d1y7ta1           3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQA-MKALEGVVMELEDCAFPLLAGLEATDDPKVAFKD-   80 (154)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGG-HHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccc-hhhHcCchhhhhccccccccccccCCchhhhccc-
Confidence            5789999996 999998777776541  00 1112234444332 12333332221   111    2334566677776 


Q ss_pred             CCCEEEEeCC
Q 017143           74 LCDVVVVSTP   83 (376)
Q Consensus        74 ~~D~V~i~t~   83 (376)
                       .|+|+++.-
T Consensus        81 -advViitaG   89 (154)
T d1y7ta1          81 -ADYALLVGA   89 (154)
T ss_dssp             -CSEEEECCC
T ss_pred             -ccEEEeecC
Confidence             899999874

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.19  E-value=0.038  Score=43.12  Aligned_cols=72  Identities=22%  Similarity=0.210  Sum_probs=46.6

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc----CCC---CCccCCHHHHhhCCCCCEE
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF----DWP---LKVFPGHQELLDSGLCDVV   78 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~l~~~~~D~V   78 (376)
                      --+|.|+|+|..++..+.+|...   + + +.|+.|+.+   +++++++++    ...   ...+.+++..+  .+.|++
T Consensus        18 ~k~vlIlGaGG~arai~~aL~~~---~-~-i~I~nR~~~---ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~dli   87 (177)
T d1nvta1          18 DKNIVIYGAGGAARAVAFELAKD---N-N-IIIANRTVE---KAEALAKEIAEKLNKKFGEEVKFSGLDVDL--DGVDII   87 (177)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSS---S-E-EEEECSSHH---HHHHHHHHHHHHHTCCHHHHEEEECTTCCC--TTCCEE
T ss_pred             CCEEEEECCcHHHHHHHHHHccc---c-c-eeeehhhhh---HHHHHHHHHHHhhchhhhhhhhhhhhhhcc--chhhhh
Confidence            35899999999999887777554   3 4 558999988   455554433    221   01123333333  348999


Q ss_pred             EEeCCCCcc
Q 017143           79 VVSTPNMTH   87 (376)
Q Consensus        79 ~i~t~~~~h   87 (376)
                      +.|||...+
T Consensus        88 In~tp~g~~   96 (177)
T d1nvta1          88 INATPIGMY   96 (177)
T ss_dssp             EECSCTTCT
T ss_pred             ccCCccccc
Confidence            999997654

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.14  E-value=0.1  Score=39.06  Aligned_cols=73  Identities=19%  Similarity=0.211  Sum_probs=41.8

Q ss_pred             eeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh-cCCCC---CccCCHHHHhhCCCCCEEEEe
Q 017143            7 VKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA-FDWPL---KVFPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         7 ~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~l~~~~~D~V~i~   81 (376)
                      |||+||| +|.+|......+.... +-..-+.++|..+.....+.++..- ...+.   ...+++++ +++  .|+|+|+
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~-~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~-~~~--aDvvvit   76 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQL-PSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPA-LEG--ADVVLIS   76 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHS-CTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHH-HTT--CSEEEEC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCC-CCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccc-cCC--CCEEEEC
Confidence            6999999 5999987666554321 3344456789865432333333321 00111   12345654 554  7999998


Q ss_pred             CC
Q 017143           82 TP   83 (376)
Q Consensus        82 t~   83 (376)
                      .-
T Consensus        77 aG   78 (145)
T d2cmda1          77 AG   78 (145)
T ss_dssp             CS
T ss_pred             CC
Confidence            75

>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Polymyxin resistance protein ArnA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.05  E-value=0.058  Score=43.10  Aligned_cols=75  Identities=16%  Similarity=0.043  Sum_probs=50.9

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH-----HHHHHHHHhcCCCCCc---cCC--HHHHhhCCCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSR-----QQALKLANAFDWPLKV---FPG--HQELLDSGLCD   76 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~-----~~~~~~~~~~~~~~~~---~~~--~~~~l~~~~~D   76 (376)
                      |||.++|.+.+|...+..|.+.   ++++++|+...+.+-     ...++++++.++++..   .++  +.+.+...++|
T Consensus         1 Mkiv~~~~~~~g~~~l~~L~~~---g~~I~~Vvt~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~i~~~~~D   77 (203)
T d2blna2           1 MKTVVFAYHDMGCLGIEALLAA---GYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPD   77 (203)
T ss_dssp             CEEEEEECHHHHHHHHHHHHHT---TCEEEEEECCCC------CCCCHHHHHHHHTCCEECCSCCCSHHHHHHHHHTCCS
T ss_pred             CeEEEEecCHHHHHHHHHHHHC---CCCEEEEEcCCCCCCcccccCHHHHHHHHcCCcceecccccchhhhhhhhhhccc
Confidence            6899999999999888888764   789999986543211     1246778888887211   122  23445556799


Q ss_pred             EEEEeCCC
Q 017143           77 VVVVSTPN   84 (376)
Q Consensus        77 ~V~i~t~~   84 (376)
                      +++++.-.
T Consensus        78 lii~~g~~   85 (203)
T d2blna2          78 VIFSFYYR   85 (203)
T ss_dssp             EEEEESCC
T ss_pred             ceeeeecc
Confidence            98888754

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.89  E-value=0.12  Score=40.46  Aligned_cols=78  Identities=22%  Similarity=0.227  Sum_probs=56.7

Q ss_pred             CceeEEEEe-C-ChhhHHHHHHhhhhcCCCcEEEEEeC----CChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEE
Q 017143            5 DTVKYGIIG-M-GMMGREHFINLHHLRSQGVSVVCIAD----PHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVV   78 (376)
Q Consensus         5 ~~~~v~iiG-~-G~~g~~~~~~~~~~~~~~~~~~~v~d----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V   78 (376)
                      +.+||++|| . .++.+..+..+..+   ++++.-++-    +.++-.+.+++++.+.|..+..+++.++.++.  .|+|
T Consensus         4 ~~lkia~vGD~~nnV~~Sli~~~~~~---G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~--aDvV   78 (185)
T d1dxha2           4 HDISYAYLGDARNNMGNSLLLIGAKL---GMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKG--VDFV   78 (185)
T ss_dssp             GGCEEEEESCCSSHHHHHHHHHHHHT---TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTT--CSEE
T ss_pred             CCCEEEEEcCCcchHHHHHHHHHHHc---CCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhcccc--ccEE
Confidence            358999999 4 56778888888887   799885552    23444456667776667666788999999987  8988


Q ss_pred             EEeCCCCcc
Q 017143           79 VVSTPNMTH   87 (376)
Q Consensus        79 ~i~t~~~~h   87 (376)
                      +.-+.-+.+
T Consensus        79 yt~~w~~~~   87 (185)
T d1dxha2          79 HTDVWVSMG   87 (185)
T ss_dssp             EECCCSCSS
T ss_pred             Eeehhhhhh
Confidence            877764444

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.82  E-value=0.0031  Score=49.61  Aligned_cols=88  Identities=13%  Similarity=0.124  Sum_probs=58.4

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc----CCHHHHh----hCCCCCE
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF----PGHQELL----DSGLCDV   77 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l----~~~~~D~   77 (376)
                      =+|.|+|+ |.+|...+...+.+   +++++++++ ++++    .++++++|.+ .++    .++.+-+    ....+|+
T Consensus        30 ~~VlV~Ga~G~vG~~aiq~a~~~---G~~vi~~~~-~~~~----~~~~~~~Ga~-~vi~~~~~~~~~~i~~~t~~~g~d~  100 (174)
T d1yb5a2          30 ESVLVHGASGGVGLAACQIARAY---GLKILGTAG-TEEG----QKIVLQNGAH-EVFNHREVNYIDKIKKYVGEKGIDI  100 (174)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHT---TCEEEEEES-SHHH----HHHHHHTTCS-EEEETTSTTHHHHHHHHHCTTCEEE
T ss_pred             CEEEEEecccccccccccccccc---Ccccccccc-cccc----cccccccCcc-cccccccccHHHHhhhhhccCCceE
Confidence            47999995 99998877766665   889988775 4543    2445567765 332    2343333    2345888


Q ss_pred             EEEeCCCCccHHHHHHHHcCCCCCeEEE
Q 017143           78 VVVSTPNMTHYQILMDIINHPKPHHVLV  105 (376)
Q Consensus        78 V~i~t~~~~h~~~~~~al~~~~g~~Vl~  105 (376)
                      |+-++. ..+.+.+.++++.+ |+-|.+
T Consensus       101 v~d~~g-~~~~~~~~~~l~~~-G~iv~~  126 (174)
T d1yb5a2         101 IIEMLA-NVNLSKDLSLLSHG-GRVIVV  126 (174)
T ss_dssp             EEESCH-HHHHHHHHHHEEEE-EEEEEC
T ss_pred             Eeeccc-HHHHHHHHhccCCC-CEEEEE
Confidence            888776 45788888888742 666665

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=93.82  E-value=0.14  Score=38.88  Aligned_cols=66  Identities=21%  Similarity=0.244  Sum_probs=50.0

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM   85 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~   85 (376)
                      -++.|+|.|+.|+.-+..++.+   +..++ |++.||-+  ..++..  -|+.  + .+.++++..  .|+++-+|.+.
T Consensus        24 k~vvV~GYG~vGrG~A~~~rg~---Ga~V~-V~E~DPi~--alqA~m--dGf~--v-~~~~~a~~~--aDi~vTaTGn~   89 (163)
T d1v8ba1          24 KIVVICGYGDVGKGCASSMKGL---GARVY-ITEIDPIC--AIQAVM--EGFN--V-VTLDEIVDK--GDFFITCTGNV   89 (163)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHH---TCEEE-EECSCHHH--HHHHHT--TTCE--E-CCHHHHTTT--CSEEEECCSSS
T ss_pred             CEEEEecccccchhHHHHHHhC---CCEEE-EEecCchh--hHHHHh--cCCc--c-CchhHcccc--CcEEEEcCCCC
Confidence            4899999999999988888887   77755 89999963  223222  2543  3 578999987  79999999864

>d1gr0a1 c.2.1.3 (A:14-200,A:312-367) Myo-inositol 1-phosphate synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Myo-inositol 1-phosphate synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.75  E-value=0.28  Score=39.32  Aligned_cols=155  Identities=12%  Similarity=0.038  Sum_probs=86.4

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcC--------------------CCcEEEEEeCCChhhHHH--HHHHHHhcCC----
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRS--------------------QGVSVVCIADPHLQSRQQ--ALKLANAFDW----   58 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~--------------------~~~~~~~v~d~~~~~~~~--~~~~~~~~~~----   58 (376)
                      +++||||||.|+-+...+..+...++                    .++++|+-+|.|+++..+  .+.+-+.-+.    
T Consensus         1 ~kIrVaIvGvGNcASslvqGieyyk~~~~~~~v~Glm~~~iggY~v~DIe~VaafDVD~~KVGkdlseAi~a~pN~t~~~   80 (243)
T d1gr0a1           1 TEVRVAIVGVGNCASSLVQGVEYYYNADDTSTVPGLMHVRFGPYHVRDVKFVAAFDVDAKKVGFDLSDAIFASENNTIKI   80 (243)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTTCCTTSCCTTCSCSEETTEEGGGEEEEEEEECBTTTTTSBHHHHTTSTTCCCCCC
T ss_pred             CceEEEEEcchHHHHHHHHHHHHHhcCCCccccccceecccCCccccceEEEEEEecCccccCCcHHHHHhcCCCCceee
Confidence            37999999999988877766543311                    278999999999986521  1221111110    


Q ss_pred             ---C---C-----------------------CccCCHHHHhhCCCCCEEEEeCCCCcc---HHHHHHHHcCCCCCeEEEe
Q 017143           59 ---P---L-----------------------KVFPGHQELLDSGLCDVVVVSTPNMTH---YQILMDIINHPKPHHVLVE  106 (376)
Q Consensus        59 ---~---~-----------------------~~~~~~~~~l~~~~~D~V~i~t~~~~h---~~~~~~al~~~~g~~Vl~E  106 (376)
                         +   +                       .--.+.-+.|++.++|+++...|....   .-.+..||+  +|.+..=-
T Consensus        81 ~d~p~~gv~V~~G~~LDg~~~~~~~~~~~~~~~~~dvv~~Lk~~~~dVlvnylPvGse~A~~~YA~~al~--Ag~aFVN~  158 (243)
T d1gr0a1          81 ADVAPTNVIVQRGPTLDGIGKYYADTIELSDAEPVDVVQALKEAKVDVLVSYLPVGSEEADKFYAQCAID--AGVAFVNA  158 (243)
T ss_dssp             SCCCCCCCBCEECCCTTSCCHHHHTTSCBCSSCCCCHHHHHHHTTCSEEEECCCTTCHHHHHHHHHHHHH--HTCEEEEC
T ss_pred             CCCCCCCCEEeccCCccccchhhhcccCCCCccHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHHHHHHH--cCceEEec
Confidence               0   0                       001124455555678888877776432   334666788  66665555


Q ss_pred             cCC--CCCHHHHHHHHHHHHhCCCeEEEEeecccc-------CHHHHHHHHHHHcCCCCceEEEEEeecc
Q 017143          107 KPL--CTTVADCKKVVDAARKRPDILVQVGLEYRY-------MPPVAKLIQIVKSGSIGQVKMVAIREHR  167 (376)
Q Consensus       107 KP~--a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~-------~p~~~~~k~~i~~g~iG~i~~~~~~~~~  167 (376)
                      -|.  +.+.    +..+..+++ |+++.-- -.+-       -..++.+|-+++.|.-|.+..++..+..
T Consensus       159 iP~fIAsdp----~w~~kF~e~-glpivGD-Dikspn~AgvviDaiR~aKla~dRGi~G~l~~~sa~~mK  222 (243)
T d1gr0a1         159 LPVFIASDP----VWAKKFTDA-RVPIVGD-DIKSPNSAGVIIDAVRAAKIAKDRGIGGPVIPASAYLMK  222 (243)
T ss_dssp             SSCCSTTSH----HHHHHHHHH-TCEEEES-SBCCHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHBS
T ss_pred             ccccccCCH----HHHHHHHHc-CCcEEcc-cccccccchhHHHHHHHHHHHHHcCCCCcccchhHhhhc
Confidence            554  3333    245555333 6665433 2111       1123334555677777777766654433

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=93.64  E-value=0.089  Score=39.30  Aligned_cols=71  Identities=21%  Similarity=0.223  Sum_probs=42.3

Q ss_pred             eEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChh-hH--HHHHHHHHh--cCCCCC-ccCCHHHHhhCCCCCEEEE
Q 017143            8 KYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQ-SR--QQALKLANA--FDWPLK-VFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         8 ~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~-~~--~~~~~~~~~--~~~~~~-~~~~~~~~l~~~~~D~V~i   80 (376)
                      ||+||| +|.+|......+...  +-+.-+.++|.+.. ..  ..+.++..-  +..+++ ...+++++ .  +.|+|+|
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~--~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~~~-~--~aDiVvi   76 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALR--DIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDT-A--GSDVVVI   76 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT--TCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGG-T--TCSEEEE
T ss_pred             eEEEECCCCcHHHHHHHHHHhC--CCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHHHh-h--hcCEEEE
Confidence            899999 699999777666665  45555668897532 11  123334321  222222 23567665 3  4799998


Q ss_pred             eCC
Q 017143           81 STP   83 (376)
Q Consensus        81 ~t~   83 (376)
                      +..
T Consensus        77 taG   79 (142)
T d1o6za1          77 TAG   79 (142)
T ss_dssp             CCC
T ss_pred             ecc
Confidence            754

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=93.38  E-value=0.24  Score=39.34  Aligned_cols=75  Identities=11%  Similarity=0.018  Sum_probs=51.8

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-CC-ccCCHHHH---hhCCCCCEEEEe
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LK-VFPGHQEL---LDSGLCDVVVVS   81 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~---l~~~~~D~V~i~   81 (376)
                      .-|.=|||| .|...+...+..  |+..++| +|.++..+..+.+.+++.+++ +. ...|..++   +.+..+|.|+|.
T Consensus        31 PlvLeIGcG-~G~~~~~lA~~~--p~~~~iG-iD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~  106 (204)
T d2fcaa1          31 PIHIEVGTG-KGQFISGMAKQN--PDINYIG-IELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLN  106 (204)
T ss_dssp             CEEEEECCT-TSHHHHHHHHHC--TTSEEEE-ECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred             ceEEEEEec-CcHHHHHHHHhC--CCCcEEE-eecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccc
Confidence            347889999 455444334444  8999997 599999888888778888876 22 23454444   455679999998


Q ss_pred             CCCC
Q 017143           82 TPNM   85 (376)
Q Consensus        82 t~~~   85 (376)
                      -|..
T Consensus       107 fp~P  110 (204)
T d2fcaa1         107 FSDP  110 (204)
T ss_dssp             SCCC
T ss_pred             cccc
Confidence            8764

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=93.38  E-value=0.072  Score=41.58  Aligned_cols=93  Identities=15%  Similarity=0.159  Sum_probs=53.7

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhh-------------------HHHHHHHHHhcCCCCCccC
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQS-------------------RQQALKLANAFDWPLKVFP   64 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~-------------------~~~~~~~~~~~~~~~~~~~   64 (376)
                      .++-||+|||.|..|......++..   +.+++ +++.++..                   .+...+..+++|+.++.=+
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~---G~~Vt-l~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~  116 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAAR---GHQVT-LFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNH  116 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTT---TCEEE-EEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESC
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhh---ccceE-EEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCC
Confidence            3568999999999998887777665   77866 67765421                   0122233344565521101


Q ss_pred             CHH-HHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEE
Q 017143           65 GHQ-ELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLV  105 (376)
Q Consensus        65 ~~~-~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~  105 (376)
                      ... +.  ..+.|.|+++|-...+ .+...-++  .|+.|.+
T Consensus       117 ~Vt~~~--~~~~d~vilAtG~~~~-~~~~pg~~--~g~~v~v  153 (179)
T d1ps9a3         117 TVTADQ--LQAFDETILASGIPNR-ALAQPLID--SGKTVHL  153 (179)
T ss_dssp             CCCSSS--SCCSSEEEECCCEECC-TTHHHHHT--TTCCEEE
T ss_pred             EEcccc--cccceeEEEeecCCCc-ccccchhc--cCCEEEE
Confidence            111 11  2358999999975332 33344556  5666654

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=93.33  E-value=0.048  Score=41.84  Aligned_cols=71  Identities=18%  Similarity=0.184  Sum_probs=47.4

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC---CHHHHhhCCCCCEEEEe
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP---GHQELLDSGLCDVVVVS   81 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~D~V~i~   81 (376)
                      ++-||.|||.|..|...+.....+   +.++. ++|.+.++++..+..-.. .+. ..+.   .+++.+.+  .|+||-+
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~l---GA~V~-~~D~~~~~l~~l~~~~~~-~~~-~~~~~~~~l~~~~~~--aDivI~a  102 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGL---GAQVQ-IFDINVERLSYLETLFGS-RVE-LLYSNSAEIETAVAE--ADLLIGA  102 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT---TCEEE-EEESCHHHHHHHHHHHGG-GSE-EEECCHHHHHHHHHT--CSEEEEC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhC---CCEEE-EEeCcHHHHHHHHHhhcc-cce-eehhhhhhHHHhhcc--CcEEEEe
Confidence            468999999999999988888887   77766 689999865544443221 121 2222   24555555  7988865


Q ss_pred             CC
Q 017143           82 TP   83 (376)
Q Consensus        82 t~   83 (376)
                      .-
T Consensus       103 al  104 (168)
T d1pjca1         103 VL  104 (168)
T ss_dssp             CC
T ss_pred             ee
Confidence            43

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=92.99  E-value=0.18  Score=41.54  Aligned_cols=113  Identities=11%  Similarity=0.158  Sum_probs=73.4

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcC-CC-C-CccCCHHHHhhCCCCCEEEEeCC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFD-WP-L-KVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~-~~-~-~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      .||.=+|+|.=+..+.  +++.-.+.-+|++ +|.+++..+.+++-.++++ .. + ....|+.+.+.+..+|+|++-.|
T Consensus        87 ~rVLEiG~GsG~lt~~--la~~v~~~g~V~~-vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~fD~V~ld~p  163 (250)
T d1yb2a1          87 MDILEVGVGSGNMSSY--ILYALNGKGTLTV-VERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIADIP  163 (250)
T ss_dssp             CEEEEECCTTSHHHHH--HHHHHTTSSEEEE-ECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEECCS
T ss_pred             CEEEEeeeeCcHHHHH--HHHHhCCCcEEEE-EECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccceeeeeeecCC
Confidence            6899999985332222  2221125667776 6999998877776655543 22 1 22356777777777999998887


Q ss_pred             C-CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCC
Q 017143           84 N-MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPD  128 (376)
Q Consensus        84 ~-~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~  128 (376)
                      . +...+.+.++|+  .|-.+.|=-|   +.++..++.++. +++|
T Consensus       164 ~p~~~l~~~~~~LK--pGG~lv~~~P---~i~Qv~~~~~~l-~~~g  203 (250)
T d1yb2a1         164 DPWNHVQKIASMMK--PGSVATFYLP---NFDQSEKTVLSL-SASG  203 (250)
T ss_dssp             CGGGSHHHHHHTEE--EEEEEEEEES---SHHHHHHHHHHS-GGGT
T ss_pred             chHHHHHHHHHhcC--CCceEEEEeC---CcChHHHHHHHH-HHCC
Confidence            5 466788888998  5555555434   667777777777 3334

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=92.89  E-value=0.42  Score=36.83  Aligned_cols=76  Identities=13%  Similarity=0.141  Sum_probs=47.2

Q ss_pred             CceeEEEEeC-ChhhHHHHHHhhhhc---CCCcEEEEEeCCChhhHHHHHHHHHh---cCCC----CCccCCHHHHhhCC
Q 017143            5 DTVKYGIIGM-GMMGREHFINLHHLR---SQGVSVVCIADPHLQSRQQALKLANA---FDWP----LKVFPGHQELLDSG   73 (376)
Q Consensus         5 ~~~~v~iiG~-G~~g~~~~~~~~~~~---~~~~~~~~v~d~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~l~~~   73 (376)
                      +++||.|+|+ |.+|...+..|++..   ....-...+.|.+... +.++.++-+   ...+    ...+++..+.+++ 
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~-~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~-  100 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSF-QALEGVAMELEDSLYPLLREVSIGIDPYEVFED-  100 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGH-HHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT-
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCcccc-chhcchhhhhcccccccccCccccccchhhccC-
Confidence            5789999996 999998888776631   0122234477776642 233433322   1111    2445677777776 


Q ss_pred             CCCEEEEeCC
Q 017143           74 LCDVVVVSTP   83 (376)
Q Consensus        74 ~~D~V~i~t~   83 (376)
                       .|+|+|+..
T Consensus       101 -aDvVvi~ag  109 (175)
T d7mdha1         101 -VDWALLIGA  109 (175)
T ss_dssp             -CSEEEECCC
T ss_pred             -CceEEEeec
Confidence             899999884

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.71  E-value=0.018  Score=46.18  Aligned_cols=69  Identities=14%  Similarity=0.100  Sum_probs=43.9

Q ss_pred             ceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-----CCccCCHHHHhhCCCCCEEE
Q 017143            6 TVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-----LKVFPGHQELLDSGLCDVVV   79 (376)
Q Consensus         6 ~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~D~V~   79 (376)
                      +-||.|+| +|++|...+..|.+.   +.+|+++. |++++   ..... .-++.     ..-.+++++++..  +|+|+
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~---g~~V~~~~-R~~~~---~~~~~-~~~~~~~~gD~~d~~~l~~al~~--~d~vi   72 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQA---GYEVTVLV-RDSSR---LPSEG-PRPAHVVVGDVLQAADVDKTVAG--QDAVI   72 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHT---TCEEEEEE-SCGGG---SCSSS-CCCSEEEESCTTSHHHHHHHHTT--CSEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHC---cCEEEEEE-cChhh---ccccc-ccccccccccccchhhHHHHhcC--CCEEE
Confidence            57899999 699999998888775   78988764 66663   21111 11221     1122344555654  89998


Q ss_pred             EeCCC
Q 017143           80 VSTPN   84 (376)
Q Consensus        80 i~t~~   84 (376)
                      .+...
T Consensus        73 ~~~g~   77 (205)
T d1hdoa_          73 VLLGT   77 (205)
T ss_dssp             ECCCC
T ss_pred             EEecc
Confidence            87753

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.71  E-value=0.096  Score=34.54  Aligned_cols=34  Identities=21%  Similarity=0.238  Sum_probs=28.5

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChh
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQ   44 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~   44 (376)
                      .+|||+|.|..|+....+...+   ++++. +.|++++
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~L---G~~v~-vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPL---GIAVW-PVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGG---TEEEE-EECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHc---CCEEE-EEcCCCC
Confidence            5899999999999998888887   89976 5666655

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=92.64  E-value=0.31  Score=40.45  Aligned_cols=112  Identities=10%  Similarity=0.026  Sum_probs=75.8

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC--C-CccCCHHHHhhCCCCCEEEEeC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP--L-KVFPGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~l~~~~~D~V~i~t   82 (376)
                      -.+|.=+|||.=+..+.  +++.-.+..+|++ +|.+++..+.+++..+++++.  + -...|+.+.+....+|.|++-.
T Consensus       104 G~~VLDiG~GsG~lt~~--lA~~~~~~G~V~~-vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~~~D~V~~d~  180 (266)
T d1o54a_         104 GDRIIDTGVGSGAMCAV--LARAVGSSGKVFA-YEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLDV  180 (266)
T ss_dssp             TCEEEEECCTTSHHHHH--HHHHTTTTCEEEE-ECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEECC
T ss_pred             CCEEEECCCCCCHHHHH--HHHHhCCCcEEEE-EeCCHHHHHHHHHHHHHhccccCcEEEeccccccccccceeeeEecC
Confidence            46899999985332221  2222125678886 699999888888888888764  1 1234555556666799999999


Q ss_pred             CCC-ccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q 017143           83 PNM-THYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARK  125 (376)
Q Consensus        83 ~~~-~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~  125 (376)
                      |.. ...+.+..+|+  .|-.+.|--|   +.++..++.++.++
T Consensus       181 p~p~~~l~~~~~~LK--pGG~lv~~~P---~~~Qv~~~~~~l~~  219 (266)
T d1o54a_         181 PDPWNYIDKCWEALK--GGGRFATVCP---TTNQVQETLKKLQE  219 (266)
T ss_dssp             SCGGGTHHHHHHHEE--EEEEEEEEES---SHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhhcC--CCCEEEEEeC---cccHHHHHHHHHHH
Confidence            974 66788999999  6655555444   56677777777633

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.43  E-value=0.29  Score=37.10  Aligned_cols=76  Identities=17%  Similarity=0.208  Sum_probs=52.0

Q ss_pred             ceeEEEEe-C-ChhhHHHHHHhhhhcCCCcEEEEEeCCC-----hhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEE
Q 017143            6 TVKYGIIG-M-GMMGREHFINLHHLRSQGVSVVCIADPH-----LQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVV   78 (376)
Q Consensus         6 ~~~v~iiG-~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V   78 (376)
                      -+||++|| + .++.+..+..+...   +++++. +.+.     ++-..++.+.+.+.+-.+..+++.+++++.  .|+|
T Consensus         3 g~ki~~vGD~~nnV~~Sli~~~~~~---g~~i~~-~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~--aDvi   76 (161)
T d1vlva2           3 GVKVVFMGDTRNNVATSLMIACAKM---GMNFVA-CGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAG--ADVV   76 (161)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHHHT---TCEEEE-ESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTT--CSEE
T ss_pred             CCEEEEEcCCccHHHHHHHHHHHHc---CCEEEE-ecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhh--hhhe
Confidence            47999999 4 56778888888887   789874 4442     233344555565555445678999999987  8999


Q ss_pred             EEeCCCCcc
Q 017143           79 VVSTPNMTH   87 (376)
Q Consensus        79 ~i~t~~~~h   87 (376)
                      +.-+.-..+
T Consensus        77 yt~~~q~~~   85 (161)
T d1vlva2          77 YTDVWASMG   85 (161)
T ss_dssp             EECCCC---
T ss_pred             eccceeeec
Confidence            987765444

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=92.43  E-value=0.28  Score=40.13  Aligned_cols=120  Identities=14%  Similarity=0.119  Sum_probs=66.1

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCC-----ccCCHHHHhhCCCCCEEEE
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLK-----VFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~D~V~i   80 (376)
                      .-||.|||+|.+|...+..|...   ++.-..++|.|.=.   ...+-+++.+...     -..-..+-|..-.+++-+.
T Consensus        30 ~~~VliiG~GglGs~va~~La~~---Gvg~i~lvD~D~Ve---~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~  103 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASA---GVGNLTLLDFDTVS---LSNLQRQTLHSDATVGQPKVESARDALTRINPHIAIT  103 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHH---TCSEEEEECCCBCC---GGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHc---CCCeEEEECCcccc---hhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchh
Confidence            46999999999999999999987   77777788987641   2233333221100     0111233333333454444


Q ss_pred             eCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeecc
Q 017143           81 STPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEY  137 (376)
Q Consensus        81 ~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~  137 (376)
                      +.+...-.......+.   ...|++...  .+.+.-..+-+.| .+.++++..+...
T Consensus       104 ~~~~~~~~~~~~~~~~---~~divid~~--d~~~~~~~in~~~-~~~~ip~i~g~~~  154 (247)
T d1jw9b_         104 PVNALLDDAELAALIA---EHDLVLDCT--DNVAVRNQLNAGC-FAAKVPLVSGAAI  154 (247)
T ss_dssp             EECSCCCHHHHHHHHH---TSSEEEECC--SSHHHHHHHHHHH-HHHTCCEEEEEEE
T ss_pred             hhhhhhhhcccccccc---ccceeeecc--chhhhhhhHHHHH-HHhCCCccccccc
Confidence            4444333344444454   345666532  3344444555555 3447777776554

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=92.37  E-value=0.26  Score=38.22  Aligned_cols=129  Identities=13%  Similarity=0.127  Sum_probs=73.4

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC--C--CccCCHHHHhh---CCCCCEE
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP--L--KVFPGHQELLD---SGLCDVV   78 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~l~---~~~~D~V   78 (376)
                      =+|.|.|+ |.+|...+.. ++.  -+.++++++. ++++.    ++.+++|.+  +  ...+..+.+++   ...+|+|
T Consensus        31 ~~VlV~ga~ggvG~~aiql-ak~--~Ga~vi~~~~-~~~~~----~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v  102 (182)
T d1v3va2          31 ETVLVSAAAGAVGSVVGQI-AKL--KGCKVVGAAG-SDEKI----AYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCY  102 (182)
T ss_dssp             CEEEESSTTSHHHHHHHHH-HHH--TTCEEEEEES-SHHHH----HHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEE
T ss_pred             CEEEEEeCCCchhHHHHHH-HHc--cCCEEEEeCC-CHHHH----HHHHhhhhhhhcccccccHHHHHHHHhhcCCCcee
Confidence            36788887 4466665544 444  5899998764 45433    344455654  1  11122344333   3568999


Q ss_pred             EEeCCCCccHHHHHHHHcCCCCCeEEE----------ecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCH-----HH
Q 017143           79 VVSTPNMTHYQILMDIINHPKPHHVLV----------EKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMP-----PV  143 (376)
Q Consensus        79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~----------EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p-----~~  143 (376)
                      +-++. ..+.+....+++.+ |+.|.+          ..|...+..+      .. .+ ++.+.--+..+|.+     ..
T Consensus       103 ~D~vG-~~~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~------l~-~k-~~ti~g~~~~~~~~~~~~~~~  172 (182)
T d1v3va2         103 FDNVG-GEFLNTVLSQMKDF-GKIAICGAISVYNRMDQLPPGPSPES------II-YK-QLRIEGFIVYRWQGDVREKAL  172 (182)
T ss_dssp             EESSC-HHHHHHHGGGEEEE-EEEEECCCGGGTTCTTSCCBCCCHHH------HH-HT-TCEEEECCGGGCCHHHHHHHH
T ss_pred             EEecC-chhhhhhhhhccCC-CeEEeecceeeccccccCCCCcchHH------Hh-hc-CcEEEEEEEeccChHHHHHHH
Confidence            99987 46788888888743 555554          2233444433      23 23 44444444556654     35


Q ss_pred             HHHHHHHHcC
Q 017143          144 AKLIQIVKSG  153 (376)
Q Consensus       144 ~~~k~~i~~g  153 (376)
                      +.+-+++++|
T Consensus       173 ~~l~~~i~~G  182 (182)
T d1v3va2         173 RDLMKWVLEG  182 (182)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHhCc
Confidence            6666666654

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=92.31  E-value=0.34  Score=37.66  Aligned_cols=76  Identities=12%  Similarity=0.094  Sum_probs=54.2

Q ss_pred             CceeEEEEe-C-ChhhHHHHHHhhhhcCCCcEEEEEeC----CChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEE
Q 017143            5 DTVKYGIIG-M-GMMGREHFINLHHLRSQGVSVVCIAD----PHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVV   78 (376)
Q Consensus         5 ~~~~v~iiG-~-G~~g~~~~~~~~~~~~~~~~~~~v~d----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V   78 (376)
                      +.++|++|| + .++.+..+.++..+   +++++.++-    +.++-.+.+++...+.|.....+++.++++..  .|+|
T Consensus         4 ~~l~i~~vGD~~nnv~~Sli~~~~~~---g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvv   78 (183)
T d1duvg2           4 NEMTLVYAGDARNNMGNSMLEAAALT---GLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEG--ADFI   78 (183)
T ss_dssp             GGCEEEEESCTTSHHHHHHHHHHHHH---CCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTT--CSEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHHHHHc---CCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEechhhcccc--CCEE
Confidence            468999999 4 45778888888887   789885542    22222345566666666555678999999987  8988


Q ss_pred             EEeCCCC
Q 017143           79 VVSTPNM   85 (376)
Q Consensus        79 ~i~t~~~   85 (376)
                      +.-+..+
T Consensus        79 yt~~w~s   85 (183)
T d1duvg2          79 YTDVWVS   85 (183)
T ss_dssp             EECCSSC
T ss_pred             EEEehhh
Confidence            8877754

>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Methionyl-tRNAfmet formyltransferase
species: Escherichia coli [TaxId: 562]

Probab=92.14  E-value=0.4  Score=37.93  Aligned_cols=79  Identities=19%  Similarity=0.165  Sum_probs=51.9

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH--------HHHHHHHHhcCCCCCcc-----CCHHHHhh
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSR--------QQALKLANAFDWPLKVF-----PGHQELLD   71 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~--------~~~~~~~~~~~~~~~~~-----~~~~~~l~   71 (376)
                      .+|||+++|.+.++...+..|.+.   ++++++|+...+.+.        .....++.+.+++....     +...+.+.
T Consensus         2 ~~mKI~f~G~~~~~~~~L~~L~~~---~~~i~~Vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (206)
T d1fmta2           2 ESLRIIFAGTPDFAARHLDALLSS---GHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSLRPQENQQLVA   78 (206)
T ss_dssp             CCCEEEEEECSHHHHHHHHHHHHT---TCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCSCSCSHHHHHHHH
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhC---CCCEEEEEeCCCcccccCccccccchhhhhhccCccccccccccchhhHHHHh
Confidence            479999999999988888877764   789999886532211        12344566667761111     12355666


Q ss_pred             CCCCCEEEEeCCCCc
Q 017143           72 SGLCDVVVVSTPNMT   86 (376)
Q Consensus        72 ~~~~D~V~i~t~~~~   86 (376)
                      ..++|+++++.....
T Consensus        79 ~~~~d~~v~~~~~~i   93 (206)
T d1fmta2          79 ELQADVMVVVAYGLI   93 (206)
T ss_dssp             HTTCSEEEEESCCSC
T ss_pred             hhcceEEEeeccccc
Confidence            667998888877654

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.84  E-value=0.2  Score=37.85  Aligned_cols=75  Identities=9%  Similarity=0.113  Sum_probs=45.9

Q ss_pred             CceeEEEEeC-ChhhHHHHHHhhhhc----CCCcEEEEEeCCChhhHHHHHHHHHhc---CCC----CCccCCHHHHhhC
Q 017143            5 DTVKYGIIGM-GMMGREHFINLHHLR----SQGVSVVCIADPHLQSRQQALKLANAF---DWP----LKVFPGHQELLDS   72 (376)
Q Consensus         5 ~~~~v~iiG~-G~~g~~~~~~~~~~~----~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~l~~   72 (376)
                      .++||+|||+ |.+|...+..+....    +...++ .++|.++. .++++.+..+.   ..+    ....++.++.+++
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L-~l~d~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIIL-VLLDITPM-MGVLDGVLMELQDCALPLLKDVIATDKEEIAFKD   79 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEE-EEECCGGG-HHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTT
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEE-EEecCccc-hhhhhhhhhhhcccccccccccccCcccccccCC
Confidence            5799999995 999987766665421    123344 46777653 23444443221   111    2345667777776


Q ss_pred             CCCCEEEEeCC
Q 017143           73 GLCDVVVVSTP   83 (376)
Q Consensus        73 ~~~D~V~i~t~   83 (376)
                        .|+|+++..
T Consensus        80 --~dvVVitag   88 (154)
T d5mdha1          80 --LDVAILVGS   88 (154)
T ss_dssp             --CSEEEECCS
T ss_pred             --ceEEEEecc
Confidence              899999875

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=91.38  E-value=0.18  Score=43.34  Aligned_cols=111  Identities=13%  Similarity=0.131  Sum_probs=61.6

Q ss_pred             eeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeC--CC-hhhHHHHHHHHHhcCCC-----CCccCCHHHHhhCCCCCE
Q 017143            7 VKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIAD--PH-LQSRQQALKLANAFDWP-----LKVFPGHQELLDSGLCDV   77 (376)
Q Consensus         7 ~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d--~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~D~   77 (376)
                      |||.|+| +|++|+..+..|.+.   +.+|+++-.  .+ .......+.+.. -++.     +.-++.+++++++..+|+
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~---g~~V~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~d~~~l~~~~~~~~~d~   76 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQN---GHDVIILDNLCNSKRSVLPVIERLGG-KHPTFVEGDIRNEALMTEILHDHAIDT   76 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT---TCEEEEEECCSSCCTTHHHHHHHHHT-SCCEEEECCTTCHHHHHHHHHHTTCSE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC---cCEEEEEECCCCcchhhHHHHHhhcC-CCCEEEEeecCCHHHHHHHHhccCCCE
Confidence            6899999 599999999988885   788887631  11 111112222221 1222     123345667777667999


Q ss_pred             EEEeCCCCccHHHHH----HHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCe--EEEEeecc
Q 017143           78 VVVSTPNMTHYQILM----DIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDI--LVQVGLEY  137 (376)
Q Consensus        78 V~i~t~~~~h~~~~~----~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~--~~~v~~~~  137 (376)
                      |+-+.-. .+.....    .++              ..++.....|+++|++. ++  .++.+...
T Consensus        77 ViHlAa~-~~~~~~~~~~~~~~--------------~~Nv~gt~nlL~~~~~~-~v~~~i~~Ss~~  126 (338)
T d1udca_          77 VIHFAGL-KAVGESVQKPLEYY--------------DNNVNGTLRLISAMRAA-NVKNFIFSSSAT  126 (338)
T ss_dssp             EEECCSC-CCHHHHHHCHHHHH--------------HHHHHHHHHHHHHHHHH-TCCEEEEEEEGG
T ss_pred             EEECCCc-cchhhHHhCHHHHH--------------HhHHHHHHHHHHHHHHh-CCCEEEecCcce
Confidence            8854432 2222211    222              23567778888888543 44  34444433

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=91.28  E-value=1.5  Score=34.40  Aligned_cols=74  Identities=14%  Similarity=0.096  Sum_probs=48.9

Q ss_pred             eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-CC-ccCC---HHHHhhCCCCCEEEEeC
Q 017143            8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LK-VFPG---HQELLDSGLCDVVVVST   82 (376)
Q Consensus         8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~~-~~~~---~~~~l~~~~~D~V~i~t   82 (376)
                      -|.=|||| .|...+...+..  |+..++| +|.++.....+.+-+.+.+++ ++ ...+   +.+.+.+..+|.|++.-
T Consensus        34 lvLdIGcG-~G~~~~~lA~~~--p~~~~iG-id~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~f  109 (204)
T d1yzha1          34 IHVEVGSG-KGAFVSGMAKQN--PDINYIG-IDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF  109 (204)
T ss_dssp             EEEEESCT-TSHHHHHHHHHC--TTSEEEE-EESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred             eEEEEecc-CCHHHHHHHHHC--CCCceEE-EeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccc
Confidence            47789999 454444334444  8999998 588888777776666666665 21 2233   33445566789999998


Q ss_pred             CCC
Q 017143           83 PNM   85 (376)
Q Consensus        83 ~~~   85 (376)
                      |+.
T Consensus       110 PdP  112 (204)
T d1yzha1         110 SDP  112 (204)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            854

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=90.48  E-value=0.51  Score=37.21  Aligned_cols=86  Identities=15%  Similarity=0.234  Sum_probs=57.7

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC-C
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP-N   84 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~-~   84 (376)
                      -.+|+|-|+|.+|......|.+.   +.+|+ ++|.++......    ..++..   +-+.++++.. ++|+.+-|.- .
T Consensus        27 gk~v~IqG~G~VG~~~A~~L~~~---Gakvv-v~d~d~~~~~~~----~~~g~~---~~~~~~~~~~-~~DI~iPcA~~~   94 (201)
T d1c1da1          27 GLTVLVQGLGAVGGSLASLAAEA---GAQLL-VADTDTERVAHA----VALGHT---AVALEDVLST-PCDVFAPCAMGG   94 (201)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT---TCEEE-EECSCHHHHHHH----HHTTCE---ECCGGGGGGC-CCSEEEECSCSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC---CCEEE-EecchHHHHHHH----Hhhccc---ccCccccccc-cceeeecccccc
Confidence            46899999999999988888775   88887 789988754332    234533   3356788876 4898776554 3


Q ss_pred             CccHHHHHHHHcCCCCCeEEEecC
Q 017143           85 MTHYQILMDIINHPKPHHVLVEKP  108 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~~Vl~EKP  108 (376)
                      ....+.+.+ ++  .  .+++|--
T Consensus        95 ~I~~~~a~~-i~--a--k~i~e~A  113 (201)
T d1c1da1          95 VITTEVART-LD--C--SVVAGAA  113 (201)
T ss_dssp             CBCHHHHHH-CC--C--SEECCSC
T ss_pred             cccHHHHhh-hh--h--heeeccC
Confidence            455554443 44  2  3667753

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=90.34  E-value=0.074  Score=41.13  Aligned_cols=88  Identities=16%  Similarity=0.165  Sum_probs=53.6

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-CCccCCHHHHhh-CCCCCEEEEeCC
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LKVFPGHQELLD-SGLCDVVVVSTP   83 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~-~~~~D~V~i~t~   83 (376)
                      -+|.|.|. |.+|...+...+..   +.+++++++ ++++.+    +++++|.+ +-.|.+..+.+. ...+|+|+-++.
T Consensus        29 ~~VlI~ga~G~vG~~aiqlak~~---G~~vi~~~~-~~~~~~----~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G  100 (171)
T d1iz0a2          29 EKVLVQAAAGALGTAAVQVARAM---GLRVLAAAS-RPEKLA----LPLALGAEEAATYAEVPERAKAWGGLDLVLEVRG  100 (171)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHT---TCEEEEEES-SGGGSH----HHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSC
T ss_pred             CEEEEEeccccchhhhhhhhccc---ccccccccc-cccccc----cccccccceeeehhhhhhhhhccccccccccccc
Confidence            46888895 88998877766664   789887764 455433    34456765 122344333232 345788888776


Q ss_pred             CCccHHHHHHHHcCCCCCeEEE
Q 017143           84 NMTHYQILMDIINHPKPHHVLV  105 (376)
Q Consensus        84 ~~~h~~~~~~al~~~~g~~Vl~  105 (376)
                      +  ..+.+..+++.+ |+-|++
T Consensus       101 ~--~~~~~~~~l~~~-G~~v~~  119 (171)
T d1iz0a2         101 K--EVEESLGLLAHG-GRLVYI  119 (171)
T ss_dssp             T--THHHHHTTEEEE-EEEEEC
T ss_pred             h--hHHHHHHHHhcC-CcEEEE
Confidence            4  356666777642 555554

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=89.97  E-value=0.14  Score=42.40  Aligned_cols=59  Identities=22%  Similarity=0.263  Sum_probs=42.6

Q ss_pred             eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143            7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP   83 (376)
Q Consensus         7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~   83 (376)
                      |||.|.|. |++|+..+..|.+   .+.+|+++ |++.              +++.-+++++++++..++|+|+-+.-
T Consensus         2 MKIlItGasGfiG~~l~~~L~~---~g~~Vi~~-~r~~--------------~D~~d~~~~~~~l~~~~~d~vih~a~   61 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKG---KNVEVIPT-DVQD--------------LDITNVLAVNKFFNEKKPNVVINCAA   61 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTT---SSEEEEEE-CTTT--------------CCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHh---CCCEEEEe-echh--------------ccCCCHHHHHHHHHHcCCCEEEeecc
Confidence            78999996 9999998888876   48998875 4432              22234456677887667898876654

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.45  E-value=0.12  Score=40.19  Aligned_cols=88  Identities=16%  Similarity=0.103  Sum_probs=58.6

Q ss_pred             eeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCc--c--CCHH-HHhh---CCCCCE
Q 017143            7 VKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKV--F--PGHQ-ELLD---SGLCDV   77 (376)
Q Consensus         7 ~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~--~--~~~~-~~l~---~~~~D~   77 (376)
                      =+|.|.| +|.+|...+...+..   +.+++++++ +++   +. ++++++|.+ .+  +  .++. ++.+   ...+|+
T Consensus        27 ~~VlI~ga~g~vG~~~iqla~~~---g~~vi~~~~-~~~---~~-~~l~~~Ga~-~vi~~~~~~~~~~v~~~t~~~g~d~   97 (183)
T d1pqwa_          27 ERVLIHSATGGVGMAAVSIAKMI---GARIYTTAG-SDA---KR-EMLSRLGVE-YVGDSRSVDFADEILELTDGYGVDV   97 (183)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHH---TCEEEEEES-SHH---HH-HHHHTTCCS-EEEETTCSTHHHHHHHHTTTCCEEE
T ss_pred             CEEEEECCCCCcccccchhhccc---cccceeeec-ccc---cc-ccccccccc-ccccCCccCHHHHHHHHhCCCCEEE
Confidence            4688878 599999877766665   789888775 344   22 455677765 22  1  2443 3333   245899


Q ss_pred             EEEeCCCCccHHHHHHHHcCCCCCeEEE
Q 017143           78 VVVSTPNMTHYQILMDIINHPKPHHVLV  105 (376)
Q Consensus        78 V~i~t~~~~h~~~~~~al~~~~g~~Vl~  105 (376)
                      |+-++.. .+.+.+.++|+.+ |+-|.+
T Consensus        98 v~d~~g~-~~~~~~~~~l~~~-G~~v~~  123 (183)
T d1pqwa_          98 VLNSLAG-EAIQRGVQILAPG-GRFIEL  123 (183)
T ss_dssp             EEECCCT-HHHHHHHHTEEEE-EEEEEC
T ss_pred             EEecccc-hHHHHHHHHhcCC-CEEEEE
Confidence            9988885 6788888998853 666665

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=89.45  E-value=0.58  Score=35.15  Aligned_cols=77  Identities=14%  Similarity=0.146  Sum_probs=51.1

Q ss_pred             ceeEEEEeC---ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeC
Q 017143            6 TVKYGIIGM---GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         6 ~~~v~iiG~---G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t   82 (376)
                      .+||++||=   ++..+..+..+..+   +++++.++-..-...+......++.+..+..++|+++++..  .|+|+...
T Consensus         4 gl~i~~vGD~~~srV~~Sli~~~~~~---g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~--aDvvy~~~   78 (157)
T d1ml4a2           4 GLKIGLLGDLKYGRTVHSLAEALTFY---DVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGK--LDVLYVTR   78 (157)
T ss_dssp             SEEEEEESCTTTCHHHHHHHHHGGGS---CEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTT--CSEEEECC
T ss_pred             CCEEEEEcCCccChHHHHHHHHHHhc---CCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhcc--CcEEEeec
Confidence            589999996   55677788888776   78888655332222223333444445444578999999987  89888766


Q ss_pred             CCCcc
Q 017143           83 PNMTH   87 (376)
Q Consensus        83 ~~~~h   87 (376)
                      .-..+
T Consensus        79 ~~~~~   83 (157)
T d1ml4a2          79 IQKER   83 (157)
T ss_dssp             CCGGG
T ss_pred             ccccc
Confidence            54443

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=88.94  E-value=0.43  Score=36.11  Aligned_cols=74  Identities=12%  Similarity=0.164  Sum_probs=49.1

Q ss_pred             CceeEEEEeCC---hhhHHHHHHhhhhcCCCcEEEEEeCCCh-hhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEE
Q 017143            5 DTVKYGIIGMG---MMGREHFINLHHLRSQGVSVVCIADPHL-QSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         5 ~~~~v~iiG~G---~~g~~~~~~~~~~~~~~~~~~~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      ..+||++||=+   +.++..+..+...  .+..++. +.+.. ...+...+++++.|..+..++++++++.+  .|+|+.
T Consensus         3 ~gl~i~~vGD~~nsrv~~Sli~~l~~~--~~~~~~~-~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~--aDvvy~   77 (160)
T d1ekxa2           3 DNLHVAMVGDLKYGRTVHSLTQALAKF--DGNRFYF-IAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAE--VDILYM   77 (160)
T ss_dssp             SSCEEEEESCTTTCHHHHHHHHHHTTS--SSCEEEE-ECCGGGCCCHHHHHHHHHTTCCEEECSCSTTTGGG--CSEEEE
T ss_pred             CCCEEEEEcCCCccHHHHHHHHHHHHc--CCCeEEe-eccchhhhhHHHHHHHhhhccccccccCHHHHhCc--CceEEe
Confidence            36899999964   3667777777777  5566554 44432 11123445565666655678999999987  898886


Q ss_pred             eCC
Q 017143           81 STP   83 (376)
Q Consensus        81 ~t~   83 (376)
                      ...
T Consensus        78 ~~~   80 (160)
T d1ekxa2          78 TRV   80 (160)
T ss_dssp             CCC
T ss_pred             ecc
Confidence            544

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=88.91  E-value=1.1  Score=36.25  Aligned_cols=73  Identities=14%  Similarity=0.169  Sum_probs=52.9

Q ss_pred             CccCCHHHHhhCCCCCEEEEeCCCCccH-HHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeecc
Q 017143           61 KVFPGHQELLDSGLCDVVVVSTPNMTHY-QILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEY  137 (376)
Q Consensus        61 ~~~~~~~~~l~~~~~D~V~i~t~~~~h~-~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~  137 (376)
                      ++++|..|++++  .|+|+++.|...+. +++.+.++.-....|+++.- +.+...++++.+.+ ++.++.++-++..
T Consensus       130 ~v~~d~~Eav~~--ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~S-Ti~~~~~~~l~e~l-~~kgi~vi~~hp~  203 (242)
T d2b0ja2         130 KVTSDDREAVEG--ADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHAC-TIPTTKFAKIFKDL-GREDLNITSYHPG  203 (242)
T ss_dssp             EEESCHHHHHTT--CSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECS-SSCHHHHHHHHHHT-TCTTSEEEECBCS
T ss_pred             EEECCHHHHHhc--CCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEecC-CCcHHHHHHHHHhc-ccCCCEEECCCcc
Confidence            367899999987  89999999987764 45555554222335888876 46889999999988 5558877655543

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=88.37  E-value=0.38  Score=34.17  Aligned_cols=34  Identities=18%  Similarity=0.235  Sum_probs=26.8

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL   43 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~   43 (376)
                      +-|+.|||.|.+|-..+..++++   +.+++ ++++.+
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~---G~~Vt-lve~~~   54 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGL---GAKTH-LFEMFD   54 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT---TCEEE-EECSSS
T ss_pred             CCEEEEECCChhhHHHHHHhhcc---ccEEE-EEeecc
Confidence            45899999999999988888886   67765 555543

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=88.34  E-value=0.48  Score=34.20  Aligned_cols=99  Identities=12%  Similarity=-0.001  Sum_probs=56.3

Q ss_pred             EEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCH--HHHhhC---CCCCEEEEeCC
Q 017143            9 YGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGH--QELLDS---GLCDVVVVSTP   83 (376)
Q Consensus         9 v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~---~~~D~V~i~t~   83 (376)
                      |.|+|.|.+|...+..|+..     +++ |.+.+++.   .+.+. ..|+. -.+.|.  .+.|.+   .+.++++++++
T Consensus         3 ivI~G~g~~g~~l~~~L~~~-----~i~-vi~~d~~~---~~~~~-~~~~~-~i~Gd~~~~~~L~~a~i~~A~~vi~~~~   71 (129)
T d2fy8a1           3 VVICGWSESTLECLRELRGS-----EVF-VLAEDENV---RKKVL-RSGAN-FVHGDPTRVSDLEKANVRGARAVIVNLE   71 (129)
T ss_dssp             EEEESCCHHHHHHHHTSCGG-----GEE-EEESCTTH---HHHHH-HTTCE-EEESCTTSHHHHHHTTCTTCSEEEECCS
T ss_pred             EEEECCCHHHHHHHHHHcCC-----CCE-EEEcchHH---HHHHH-hcCcc-ccccccCCHHHHHHhhhhcCcEEEEecc
Confidence            67999999999988877543     333 46777774   33333 34554 222322  344443   45789999998


Q ss_pred             CCccHHHHHHHHcC-CCCCeEEEecCCCCCHHHHHHHHH
Q 017143           84 NMTHYQILMDIINH-PKPHHVLVEKPLCTTVADCKKVVD  121 (376)
Q Consensus        84 ~~~h~~~~~~al~~-~~g~~Vl~EKP~a~~~~e~~~l~~  121 (376)
                      ++.--..+...++. ....+++++-   .+.+....+.+
T Consensus        72 ~d~~n~~~~~~~r~~~~~~~iia~~---~~~~~~~~l~~  107 (129)
T d2fy8a1          72 SDSETIHCILGIRKIDESVRIIAEA---ERYENIEQLRM  107 (129)
T ss_dssp             SHHHHHHHHHHHHHHCSSSCEEEEC---SSGGGHHHHHH
T ss_pred             chhhhHHHHHHHHHHCCCceEEEEE---cCHHHHHHHHH
Confidence            86544444333321 1344666652   34444444443

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=88.26  E-value=0.92  Score=34.90  Aligned_cols=43  Identities=21%  Similarity=0.387  Sum_probs=34.7

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHH
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKL   52 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~   52 (376)
                      +-||.|||+|..|...+.....+   +..+. ++|.+++++++.+++
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~l---GA~V~-v~D~~~~~~~~l~~l   71 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRL---GAVVM-ATDVRAATKEQVESL   71 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT---TCEEE-EECSCSTTHHHHHHT
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHc---CCEEE-EEeccHHHHHHHHHh
Confidence            56999999999999888887777   77755 789999876666554

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=88.08  E-value=1.5  Score=37.22  Aligned_cols=36  Identities=17%  Similarity=0.221  Sum_probs=29.2

Q ss_pred             CceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChh
Q 017143            5 DTVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQ   44 (376)
Q Consensus         5 ~~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~   44 (376)
                      ++.+|.|+| +|++|...+..|.+.   +.+|++++ |++.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~---G~~V~~l~-R~~~   38 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAV---GHHVRAQV-HSLK   38 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHT---TCCEEEEE-SCSC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhC---CCeEEEEE-CCcc
Confidence            467899999 599999999998875   78888876 5554

>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Sinorhizobium meliloti, CheY2 [TaxId: 382]

Probab=88.05  E-value=2.1  Score=30.64  Aligned_cols=112  Identities=14%  Similarity=0.146  Sum_probs=63.7

Q ss_pred             CCCCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC-------CccCCHHHHhh--
Q 017143            1 MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL-------KVFPGHQELLD--   71 (376)
Q Consensus         1 m~~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~--   71 (376)
                      |+...++||.||==-..-...+..+...  .++..+..++ +.+   .+.++.++...++       ...+ --++++  
T Consensus         1 ms~~~~~kILiVDD~~~~~~~l~~~L~~--~g~~~v~~a~-~~~---~al~~l~~~~~dlii~D~~mP~~~-G~el~~~l   73 (129)
T d1p6qa_           1 MSLAEKIKVLIVDDQVTSRLLLGDALQQ--LGFKQITAAG-DGE---QGMKIMAQNPHHLVISDFNMPKMD-GLGLLQAV   73 (129)
T ss_dssp             CCCSSCCCEEEECSSHHHHHHHHHHHHT--TTCSCEECCS-SHH---HHHHHHHTSCCSEEEECSSSCSSC-HHHHHHHH
T ss_pred             CCCCCCCEEEEEECCHHHHHHHHHHHHH--CCCeEEEEEC-CHH---HHHHHHHhCCCCeEEeeeecCCCC-hHHHHHHH
Confidence            7788899999998776655555544444  4665343332 333   3555555443321       0112 122222  


Q ss_pred             --CC-CCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHH
Q 017143           72 --SG-LCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAA  123 (376)
Q Consensus        72 --~~-~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a  123 (376)
                        .+ ..++-+|........+...+|++  .|.+-++-||+  +.++..+.++..
T Consensus        74 r~~~~~~~~pii~lt~~~~~~~~~~a~~--~G~~~~l~KP~--~~~~L~~~i~~v  124 (129)
T d1p6qa_          74 RANPATKKAAFIILTAQGDRALVQKAAA--LGANNVLAKPF--TIEKMKAAIEAV  124 (129)
T ss_dssp             TTCTTSTTCEEEECCSCCCHHHHHHHHH--HTCSCEECCCS--SHHHHHHHHHHH
T ss_pred             HhCcccCCCeEEEEEecCCHHHHHHHHH--CCCCEEEECCC--CHHHHHHHHHHH
Confidence              22 23443333333456788889999  88999999997  566655555443

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.04  E-value=1.2  Score=33.67  Aligned_cols=78  Identities=13%  Similarity=0.075  Sum_probs=53.1

Q ss_pred             CceeEEEEeCCh-hhHHHHHHhhhhcCCCcEEEEEeCC----ChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEE
Q 017143            5 DTVKYGIIGMGM-MGREHFINLHHLRSQGVSVVCIADP----HLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVV   79 (376)
Q Consensus         5 ~~~~v~iiG~G~-~g~~~~~~~~~~~~~~~~~~~v~d~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~   79 (376)
                      +-++|++||-+. +.+.++..+..+   +++++.++-.    ..+-.+...+...+.|..+..+++.++.+..  .|+|+
T Consensus         3 ~gl~I~~vGD~~nV~~Sli~~~~~~---g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~--advi~   77 (170)
T d1otha2           3 KGLTLSWIGDGNNILHSIMMSAAKF---GMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHG--GNVLI   77 (170)
T ss_dssp             TTCEEEEESCSSHHHHHHHTTTGGG---TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTT--CSEEE
T ss_pred             CCCEEEEEcCchhHHHHHHHHHHHc---CCEEEEEeccccCCchHHHHHHHHHHhccCCEEEEEcCHHHHHhh--hhhee
Confidence            358999999764 345666666666   7888866643    2232344555565666555678999999987  89998


Q ss_pred             EeCCCCcc
Q 017143           80 VSTPNMTH   87 (376)
Q Consensus        80 i~t~~~~h   87 (376)
                      ..+.-..+
T Consensus        78 ~~~~~~~~   85 (170)
T d1otha2          78 TDTWISMG   85 (170)
T ss_dssp             ECCSSCTT
T ss_pred             eeceeccc
Confidence            87775544

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=87.85  E-value=0.31  Score=36.64  Aligned_cols=71  Identities=15%  Similarity=0.283  Sum_probs=47.4

Q ss_pred             ceeEEEEeCC---hhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeC
Q 017143            6 TVKYGIIGMG---MMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         6 ~~~v~iiG~G---~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t   82 (376)
                      -+||++||=+   +.++..+..+...   +++++.++.+.-..  .-+.+....+..+..++|.++++.+  .|+|+...
T Consensus         3 gl~i~~vGD~~~sRv~~Sl~~~l~~~---g~~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~d~~eai~~--aDvvy~~~   75 (153)
T d1pg5a2           3 GLVFALLGDLKYARTVNSLLRILTRF---RPKLVYLISPQLLR--ARKEILDELNYPVKEVENPFEVINE--VDVLYVTR   75 (153)
T ss_dssp             TCEEEEEECCSSCHHHHHHHHHGGGS---CCSEEEEECCGGGC--CCHHHHTTCCSCEEEESCGGGTGGG--CSEEEEEC
T ss_pred             CCEEEEECCCCccHHHHHHHHHHHHc---CCeeEEEecccccc--cchhhcccCCCeEEEEeCHHHHhhc--CCeEEEee
Confidence            4899999953   3677888888887   67766555543221  1123344455555678899999987  89888754


Q ss_pred             C
Q 017143           83 P   83 (376)
Q Consensus        83 ~   83 (376)
                      .
T Consensus        76 ~   76 (153)
T d1pg5a2          76 I   76 (153)
T ss_dssp             C
T ss_pred             e
Confidence            3

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.70  E-value=0.22  Score=40.30  Aligned_cols=78  Identities=13%  Similarity=0.029  Sum_probs=43.2

Q ss_pred             CCceeEEEEe-CChhhHHHHHHhhhhcCCCc-EEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhC-CCCCEEEE
Q 017143            4 NDTVKYGIIG-MGMMGREHFINLHHLRSQGV-SVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDS-GLCDVVVV   80 (376)
Q Consensus         4 ~~~~~v~iiG-~G~~g~~~~~~~~~~~~~~~-~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~D~V~i   80 (376)
                      |++.+|.|.| +|.+|+..+..|.+.  +.+ +|+++. |++.+..  ........+...-+++++++... .++|+|+.
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~--g~~~~v~~~~-R~~~~~~--~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~   86 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQ--GLFSKVTLIG-RRKLTFD--EEAYKNVNQEVVDFEKLDDYASAFQGHDVGFC   86 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHH--TCCSEEEEEE-SSCCCCC--SGGGGGCEEEECCGGGGGGGGGGGSSCSEEEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhC--CCCCEEEEEe-cChhhhc--ccccceeeeeeecccccccccccccccccccc
Confidence            3457899999 599999999888776  454 777654 4433110  00011111100113334444332 34899998


Q ss_pred             eCCCCc
Q 017143           81 STPNMT   86 (376)
Q Consensus        81 ~t~~~~   86 (376)
                      +.....
T Consensus        87 ~~~~~~   92 (232)
T d2bkaa1          87 CLGTTR   92 (232)
T ss_dssp             CCCCCH
T ss_pred             cccccc
Confidence            876543

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.38  E-value=1.4  Score=33.21  Aligned_cols=73  Identities=21%  Similarity=0.198  Sum_probs=47.2

Q ss_pred             CceeEEEEeCCh-hhHHHHHHhhhhcCCCcEEEEEeCC-----ChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEE
Q 017143            5 DTVKYGIIGMGM-MGREHFINLHHLRSQGVSVVCIADP-----HLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVV   78 (376)
Q Consensus         5 ~~~~v~iiG~G~-~g~~~~~~~~~~~~~~~~~~~v~d~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V   78 (376)
                      .-+||++||-|. +.+..+..+...   +++++. |.+     .++-...+++.+...+.....+++.++++.+  .|+|
T Consensus         3 ~gl~Ia~VGD~~nv~~Sli~~l~~~---g~~v~~-~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~--advi   76 (163)
T d1pvva2           3 KGVKVVYVGDGNNVAHSLMIAGTKL---GADVVV-ATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKD--ADVI   76 (163)
T ss_dssp             TTCEEEEESCCCHHHHHHHHHHHHT---TCEEEE-ECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTT--CSEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHc---CCeEEE-ecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhh--ccEE
Confidence            358999999754 557777778887   788774 443     2222233343333333334678899999987  8988


Q ss_pred             EEeCC
Q 017143           79 VVSTP   83 (376)
Q Consensus        79 ~i~t~   83 (376)
                      +.-+.
T Consensus        77 y~~~~   81 (163)
T d1pvva2          77 YTDVW   81 (163)
T ss_dssp             EECCC
T ss_pred             eecce
Confidence            86554

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=87.14  E-value=0.92  Score=36.43  Aligned_cols=100  Identities=10%  Similarity=0.107  Sum_probs=64.8

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      +-.+|+|-|.|.+|...+..|.+.   +.++++ +|.+..   ....+..++|..   +-+.++++.. ++|+++-|.-.
T Consensus        38 ~g~~v~IqG~GnVG~~~a~~L~~~---Gakvv~-~d~~~~---~~~~~~~~~g~~---~~~~~~~~~~-~cDIl~PcA~~  106 (230)
T d1leha1          38 EGLAVSVQGLGNVAKALCKKLNTE---GAKLVV-TDVNKA---AVSAAVAEEGAD---AVAPNAIYGV-TCDIFAPCALG  106 (230)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT---TCEEEE-ECSCHH---HHHHHHHHHCCE---ECCGGGTTTC-CCSEEEECSCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC---CCEEEe-ecccHH---HHHHHHHhcCCc---ccCCcccccc-cccEecccccc
Confidence            357999999999999888888775   899884 677776   445555566643   3456777776 49998887664


Q ss_pred             -CccHHHHHHHHcCCCCCeEEEecC-CCCCHHHHHHHH
Q 017143           85 -MTHYQILMDIINHPKPHHVLVEKP-LCTTVADCKKVV  120 (376)
Q Consensus        85 -~~h~~~~~~al~~~~g~~Vl~EKP-~a~~~~e~~~l~  120 (376)
                       ..+.+.+. -|+  +  -++||-- -.++-.|+.+++
T Consensus       107 ~~I~~~~~~-~l~--a--k~Ive~ANn~~t~~ea~~~L  139 (230)
T d1leha1         107 AVLNDFTIP-QLK--A--KVIAGSADNQLKDPRHGKYL  139 (230)
T ss_dssp             CCBSTTHHH-HCC--C--SEECCSCSCCBSSHHHHHHH
T ss_pred             cccChHHhh-ccC--c--cEEEecccCCCCCchHHHHH
Confidence             34444443 345  3  3777753 223333444443

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.08  E-value=0.12  Score=43.93  Aligned_cols=31  Identities=23%  Similarity=0.274  Sum_probs=25.7

Q ss_pred             eeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeC
Q 017143            7 VKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIAD   40 (376)
Q Consensus         7 ~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d   40 (376)
                      -||.|.| +|++|+..+..|.+.   +.+|+++..
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~---g~~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMD---GHEVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT---TCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC---cCEEEEEeC
Confidence            5899999 599999999998775   789998753

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=87.06  E-value=1.4  Score=35.59  Aligned_cols=130  Identities=14%  Similarity=0.170  Sum_probs=76.1

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh----------hhH--------HHHHH-HHHhcCCCCCccCCH
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL----------QSR--------QQALK-LANAFDWPLKVFPGH   66 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~----------~~~--------~~~~~-~~~~~~~~~~~~~~~   66 (376)
                      -.+|+|=|.|..|...+..|.+.   +.+|++|.|.+.          +.+        ....+ +....+.  ....+-
T Consensus        31 g~~v~IqGfGnVG~~~a~~L~~~---Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~  105 (242)
T d1v9la1          31 GKTVAIQGMGNVGRWTAYWLEKM---GAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNA--EFVKNP  105 (242)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTT---TCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCC--CCCSST
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc---CCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCc--eEeeCc
Confidence            47999999999999988888775   899999998641          111        01112 2222232  345566


Q ss_pred             HHHhhCCCCCEEEEeCCCC-ccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHH
Q 017143           67 QELLDSGLCDVVVVSTPNM-THYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAK  145 (376)
Q Consensus        67 ~~~l~~~~~D~V~i~t~~~-~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~  145 (376)
                      ++++.. ++|+.+-|.... .+.+.+. .++    ..+++|--=.....++.+++  . ++ |+.+...+--.-...+..
T Consensus       106 ~~i~~~-~~DIliPcA~~~~I~~~~a~-~i~----ak~IvegAN~p~t~~a~~~L--~-~r-gI~~~PD~~aNaGGVi~s  175 (242)
T d1v9la1         106 DAIFKL-DVDIFVPAAIENVIRGDNAG-LVK----ARLVVEGANGPTTPEAERIL--Y-ER-GVVVVPDILANAGGVIMS  175 (242)
T ss_dssp             TGGGGC-CCSEEEECSCSSCBCTTTTT-TCC----CSEEECCSSSCBCHHHHHHH--H-TT-TCEEECHHHHSTHHHHHH
T ss_pred             chhccc-cccEEeecchhccccHHHHH-hcc----cCEEEecCCCCCChhHHHHH--H-hC-CeEEeCchhhcCcchhhh
Confidence            778875 499998887643 3333332 244    24777764333445555443  2 44 877766655444333333


Q ss_pred             HHHHH
Q 017143          146 LIQIV  150 (376)
Q Consensus       146 ~k~~i  150 (376)
                      ..+++
T Consensus       176 ~~E~~  180 (242)
T d1v9la1         176 YLEWV  180 (242)
T ss_dssp             HHHHH
T ss_pred             hhhhc
Confidence            33333

>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein FixJ, receiver domain
species: Rhizobium meliloti [TaxId: 382]

Probab=86.86  E-value=3.8  Score=28.86  Aligned_cols=107  Identities=13%  Similarity=0.119  Sum_probs=63.2

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC-------CccCC---HHHHhh-C
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL-------KVFPG---HQELLD-S   72 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~-------~~~~~---~~~~l~-~   72 (376)
                      |++.||.||==-..-+..+..+.+.  .++++.. ++ +.+   .+.++.++...++       ...+.   ++.+-+ .
T Consensus         1 M~~~~ILiVDDd~~~~~~l~~~L~~--~g~~v~~-a~-~~~---~al~~~~~~~~dlvi~D~~mp~~~G~e~~~~lr~~~   73 (123)
T d1dbwa_           1 MQDYTVHIVDDEEPVRKSLAFMLTM--NGFAVKM-HQ-SAE---AFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLK   73 (123)
T ss_dssp             CCCCEEEEEESSHHHHHHHHHHHHH--TTCEEEE-ES-CHH---HHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTT
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHH--CCCEEEE-EC-CHH---HHHHHHhhcCCcEEEEeccCccccchHHHHHHHhcC
Confidence            4468999998666555555555555  5888764 33 233   4555555543221       01121   223322 2


Q ss_pred             CCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHH
Q 017143           73 GLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAA  123 (376)
Q Consensus        73 ~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a  123 (376)
                      ++.-+|+++..  ...+.+.+|++  .|-.=++.||+  +.++..+.++.+
T Consensus        74 ~~~~iI~lt~~--~~~~~~~~a~~--~Ga~~yl~KP~--~~~~L~~~i~~a  118 (123)
T d1dbwa_          74 INIPSIVITGH--GDVPMAVEAMK--AGAVDFIEKPF--EDTVIIEAIERA  118 (123)
T ss_dssp             CCCCEEEEECT--TCHHHHHHHHH--TTCSEEEESSC--CHHHHHHHHHHH
T ss_pred             CCCeEEEEEee--CCHHHHHHHHH--CCCCEEEECCC--CHHHHHHHHHHH
Confidence            34555555554  34678889999  88899999997  566766655555

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=86.71  E-value=0.35  Score=39.15  Aligned_cols=39  Identities=23%  Similarity=0.347  Sum_probs=29.2

Q ss_pred             CCCCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh
Q 017143            1 MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL   43 (376)
Q Consensus         1 m~~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~   43 (376)
                      |.+..+-||+|||+|..|..-...|++.   +.+|+ |++++.
T Consensus         1 ~~~~~~~kVvVIGaGiaGl~~A~~L~~~---G~~V~-vier~~   39 (268)
T d1c0pa1           1 LMMHSQKRVVVLGSGVIGLSSALILARK---GYSVH-ILARDL   39 (268)
T ss_dssp             CCCCCSCEEEEECCSHHHHHHHHHHHHT---TCEEE-EEESSC
T ss_pred             CCCCCCCcEEEECccHHHHHHHHHHHHC---CCCEE-EEeCCC
Confidence            4444567999999999998877777774   67755 777643

>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.42  E-value=0.98  Score=35.37  Aligned_cols=31  Identities=29%  Similarity=0.648  Sum_probs=23.2

Q ss_pred             CCceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEE
Q 017143            4 NDTVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCI   38 (376)
Q Consensus         4 ~~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v   38 (376)
                      +++||||||-+ |.+ +.|+.++.+.   +++.+-+
T Consensus         4 ~~~mkIgii~~~Gn~-~s~~~al~~~---G~~~~~v   35 (202)
T d1q7ra_           4 QSNMKIGVLGLQGAV-REHVRAIEAC---GAEAVIV   35 (202)
T ss_dssp             CCCCEEEEESCGGGC-HHHHHHHHHT---TCEEEEE
T ss_pred             ccCCEEEEEECCCCH-HHHHHHHHHC---CCcEEEE
Confidence            46899999998 654 5677778776   7776654

>d1b74a1 c.78.2.1 (A:1-105) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/glutamate racemase
family: Aspartate/glutamate racemase
domain: Glutamate racemase
species: Aquifex pyrophilus [TaxId: 2714]

Probab=86.27  E-value=0.23  Score=34.64  Aligned_cols=77  Identities=16%  Similarity=0.262  Sum_probs=49.5

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH-----HHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEe
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSR-----QQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~   81 (376)
                      |||||+-.|.=|...+..+.+.. |+.+++.+.|..--+-     +...+++          ...-++|.+.++|+++|+
T Consensus         1 mkIgifDSGiGGLtVl~~l~~~l-P~~~~iY~~D~a~~PYG~ks~~~I~~~~----------~~~~~~l~~~~~~~iViA   69 (105)
T d1b74a1           1 MKIGIFDSGVGGLTVLKAIRNRY-RKVDIVYLGDTARVPYGIRSKDTIIRYS----------LECAGFLKDKGVDIIVVA   69 (105)
T ss_dssp             CEEEEEESSSTHHHHHHHHHHHS-SSCEEEEEECGGGCCGGGSCHHHHHHHH----------HHHHHHHHTTTCSEEEEC
T ss_pred             CEEEEEeCCCCHHHHHHHHHHHC-CCCCEEEEecCCCCCCCCCCHHHHHHHH----------HHHHHHHHHcCCCEEEEe
Confidence            58999988866666777765543 8899999998632211     1122211          123345666789999999


Q ss_pred             CCCCccHHHHHHHHc
Q 017143           82 TPNMTHYQILMDIIN   96 (376)
Q Consensus        82 t~~~~h~~~~~~al~   96 (376)
                      +.+..  ..++..|+
T Consensus        70 CNTaS--~~al~~lr   82 (105)
T d1b74a1          70 CNTAS--AYALERLK   82 (105)
T ss_dssp             CHHHH--HHHHHHHH
T ss_pred             cCcHH--HHHHHHHH
Confidence            98754  45556665

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=86.10  E-value=1.4  Score=31.01  Aligned_cols=32  Identities=25%  Similarity=0.395  Sum_probs=26.2

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADP   41 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~   41 (376)
                      +-||+|||.|.+|-..+..+++.   +.+++- +++
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~---g~~Vtl-v~~   53 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRL---GIDSYI-FAR   53 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTT---TCEEEE-ECS
T ss_pred             CCEEEEECCchHHHHHHHHHHhc---ccccee-eeh
Confidence            56899999999999998888876   788774 444

>d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Methylesterase CheB, N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=85.93  E-value=3.2  Score=29.99  Aligned_cols=101  Identities=15%  Similarity=0.116  Sum_probs=55.5

Q ss_pred             CCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC----------CCccCCHHHHhhCC
Q 017143            4 NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP----------LKVFPGHQELLDSG   73 (376)
Q Consensus         4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~   73 (376)
                      |+++||.||==-..-...+..+.... +++.+++.+....+    +.+..++...+          ...++-++.+-+..
T Consensus         1 M~kirVLiVDD~~~~r~~l~~~L~~~-g~~~~v~~a~~g~~----al~~~~~~~pDlvllDi~MP~~dG~e~~~~ir~~~   75 (140)
T d1a2oa1           1 MSKIRVLSVDDSALMRQIMTEIINSH-SDMEMVATAPDPLV----ARDLIKKFNPDVLTLDVEMPRMDGLDFLEKLMRLR   75 (140)
T ss_dssp             CCCEEEEEECSCHHHHHHHHHHHHTS-TTEEEEEEESSHHH----HHHHHHHHCCSEEEEECCCSSSCHHHHHHHHHHSS
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHhC-CCeEEEEEECCHHH----HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHhC
Confidence            34799999997766665555544431 45666665543332    33333333322          01122233333333


Q ss_pred             CCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCC
Q 017143           74 LCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCT  111 (376)
Q Consensus        74 ~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~  111 (376)
                      ..-.|+|.+-+....+.+.+|++  .|-.=|+.||...
T Consensus        76 ~~~~i~i~~~~~~~~~~~~~al~--~Ga~~yl~KP~~~  111 (140)
T d1a2oa1          76 PMPVVMVSSLTGKGSEVTLRALE--LGAIDFVTKPQLG  111 (140)
T ss_dssp             CCCEEEEECCTHHHHHHHHHHHH--HTCCEEEECSSSS
T ss_pred             CCCcEEEEEecCCChHHHHHHHH--cCCCEEEECCCCC
Confidence            23334444433333467889999  8889999999643

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=85.93  E-value=0.64  Score=32.85  Aligned_cols=53  Identities=15%  Similarity=0.028  Sum_probs=33.5

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCC--------hhhHHHHHHHHHhcCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPH--------LQSRQQALKLANAFDWP   59 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~--------~~~~~~~~~~~~~~~~~   59 (376)
                      +-+++|||.|.+|-..+..+.++...+.++.-+ .+.        ++-....++.-++.|+.
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli-~~~~~il~~~d~~~~~~~~~~l~~~GI~   78 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLA-YRGDMILRGFDSELRKQLTEQLRANGIN   78 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEE-ESSSSSSTTSCHHHHHHHHHHHHHTTEE
T ss_pred             CCeEEEECCChHHHHHHHHhHhhccccccccee-cccccccccccchhhHHHHHHHhhCcEE
Confidence            469999999999998776666553346776644 332        22223444445566765

>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.85  E-value=0.67  Score=31.18  Aligned_cols=63  Identities=14%  Similarity=0.089  Sum_probs=36.1

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t   82 (376)
                      |||.|||.|..-+..+..+.+.  + -++. ++--++-    ...++.     ..-++...++....++|+|+|..
T Consensus         1 MkVLviGsGgREHAia~~l~~s--~-~~v~-~~pGN~G----~~~~~~-----~~~~~~~~~~~~~~~idlviIGP   63 (90)
T d1vkza2           1 VRVHILGSGGREHAIGWAFAKQ--G-YEVH-FYPGNAG----TKRDGT-----NHPYEGEKTLKAIPEEDIVIPGS   63 (90)
T ss_dssp             CEEEEEECSHHHHHHHHHHHHT--T-CEEE-EEECCTT----GGGTSE-----ECCCCTHHHHHTSCSSCEECCSS
T ss_pred             CEEEEECCCHHHHHHHHHHhcC--C-CeEE-EecCCcc----ccccce-----eccchhhHHHHHhccceeEEECh
Confidence            6999999996444444445443  3 3554 4422332    112221     12356677777777899887754

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.10  E-value=0.3  Score=38.93  Aligned_cols=70  Identities=13%  Similarity=0.099  Sum_probs=42.6

Q ss_pred             CceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-----CCccCCHHHHhhCCCCCEE
Q 017143            5 DTVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-----LKVFPGHQELLDSGLCDVV   78 (376)
Q Consensus         5 ~~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~D~V   78 (376)
                      .+.+|.|.| +|++|+..++.|.+.. ..+.++++ .|+++   +...+..  ++.     .....++.++++.  +|+|
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g-~~v~v~~~-~R~~~---~~~~~~~--~~~~~~~d~~~~~~~~~~~~~--~d~v   72 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGS-DKFVAKGL-VRSAQ---GKEKIGG--EADVFIGDITDADSINPAFQG--IDAL   72 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTT-TTCEEEEE-ESCHH---HHHHTTC--CTTEEECCTTSHHHHHHHHTT--CSEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCC-CcEEEEEE-cCCHH---HHHhccC--CcEEEEeeecccccccccccc--ceee
Confidence            367999999 6999999999887751 34666654 46665   3333222  221     1122334555554  8988


Q ss_pred             EEeCC
Q 017143           79 VVSTP   83 (376)
Q Consensus        79 ~i~t~   83 (376)
                      +.+..
T Consensus        73 i~~a~   77 (252)
T d2q46a1          73 VILTS   77 (252)
T ss_dssp             EECCC
T ss_pred             EEEEe
Confidence            87654

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.88  E-value=2.1  Score=35.07  Aligned_cols=113  Identities=14%  Similarity=0.110  Sum_probs=70.7

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc--C-CC-C-CccCCHHHH-hhCCCCCEEE
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF--D-WP-L-KVFPGHQEL-LDSGLCDVVV   79 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~--~-~~-~-~~~~~~~~~-l~~~~~D~V~   79 (376)
                      -.+|.=+|||.=+..+.  |++.-.+.-+|++ +|.+++..+.|++-.+.+  + .+ + ....|..+. +.+..+|+|+
T Consensus        97 G~~VLE~G~GsG~lt~~--La~~vgp~G~V~~-~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fDaV~  173 (264)
T d1i9ga_          97 GARVLEAGAGSGALTLS--LLRAVGPAGQVIS-YEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAV  173 (264)
T ss_dssp             TCEEEEECCTTSHHHHH--HHHHHCTTSEEEE-ECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEE
T ss_pred             CCEEEecCcCCcHHHHH--HHHhhCCCcEEEE-ecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcceEE
Confidence            36899999985333222  2222126678776 699998877776544433  1 11 1 122444443 4455689999


Q ss_pred             EeCCC-CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhC
Q 017143           80 VSTPN-MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKR  126 (376)
Q Consensus        80 i~t~~-~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~  126 (376)
                      +-.|. +...+.+.++|+  .|-.+.|=   ..+.++..++.++.+++
T Consensus       174 ldlp~P~~~l~~~~~~Lk--pGG~lv~~---~P~i~Qv~~~~~~l~~~  216 (264)
T d1i9ga_         174 LDMLAPWEVLDAVSRLLV--AGGVLMVY---VATVTQLSRIVEALRAK  216 (264)
T ss_dssp             EESSCGGGGHHHHHHHEE--EEEEEEEE---ESSHHHHHHHHHHHHHH
T ss_pred             EecCCHHHHHHHHHhccC--CCCEEEEE---eCccChHHHHHHHHHHc
Confidence            98886 577888999999  55555543   34777887888777433

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=84.70  E-value=1.9  Score=35.44  Aligned_cols=32  Identities=19%  Similarity=0.285  Sum_probs=26.8

Q ss_pred             CceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEe
Q 017143            5 DTVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIA   39 (376)
Q Consensus         5 ~~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~   39 (376)
                      +|-||.|+| +|++|...+..|.+.   +.+|+++.
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~---G~~V~~~~   34 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISL---GHPTYVLF   34 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHT---TCCEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhC---CCEEEEEE
Confidence            467899999 599999999888875   78888764

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=84.67  E-value=1.1  Score=36.47  Aligned_cols=46  Identities=22%  Similarity=0.250  Sum_probs=31.5

Q ss_pred             eEEEE-eC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcC
Q 017143            8 KYGII-GM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFD   57 (376)
Q Consensus         8 ~v~ii-G~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~   57 (376)
                      ||++| |. +.+|+.....|++.   +.+|+ ++++++++++.+.+..++.|
T Consensus         2 KValITGas~GIG~aia~~la~~---Ga~V~-~~~r~~~~l~~~~~~i~~~g   49 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKD---GFAVA-IADYNDATAKAVASEINQAG   49 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT---TCEEE-EEESCHHHHHHHHHHHHHTT
T ss_pred             CEEEEcCCccHHHHHHHHHHHHC---CCEEE-EEECCHHHHHHHHHHHHhcC
Confidence            67666 64 56999988888885   88865 78899886554443333344

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=84.56  E-value=0.59  Score=39.21  Aligned_cols=106  Identities=15%  Similarity=0.151  Sum_probs=62.4

Q ss_pred             ceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143            6 TVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN   84 (376)
Q Consensus         6 ~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~   84 (376)
                      |-||.|.| +|++|+..+..|.+.   +..++. .+...+           .++  .-....++++....+|.|+.+...
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~---g~~vi~-~~~~~~-----------~~~--~~~~~~~~~~~~~~~d~v~~~a~~   64 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQR---GDVELV-LRTRDE-----------LNL--LDSRAVHDFFASERIDQVYLAAAK   64 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTC---TTEEEE-CCCTTT-----------CCT--TCHHHHHHHHHHHCCSEEEECCCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHC---cCEEEE-ecCchh-----------ccc--cCHHHHHHHHhhcCCCEEEEcchh
Confidence            45999999 599999999888875   555553 333221           122  234556778877779999887754


Q ss_pred             CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCe--EEEEeecccc
Q 017143           85 MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDI--LVQVGLEYRY  139 (376)
Q Consensus        85 ~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~--~~~v~~~~r~  139 (376)
                      ..+......-..      -+    +..++.-...|+++|.+. ++  .++++-..-|
T Consensus        65 ~~~~~~~~~~~~------~~----~~~Nv~gt~~ll~~a~~~-~v~~~i~~SS~~vy  110 (315)
T d1e6ua_          65 VGGIVANNTYPA------DF----IYQNMMIESNIIHAAHQN-DVNKLLFLGSSCIY  110 (315)
T ss_dssp             CCCHHHHHHCHH------HH----HHHHHHHHHHHHHHHHHT-TCCEEEEECCGGGS
T ss_pred             ccccccchhhHH------HH----HHHHHHHHHHHHHHHHHc-CCCEEEEECCceEc
Confidence            433222111000      00    113567778888888544 54  5555554443

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=84.52  E-value=0.51  Score=40.25  Aligned_cols=40  Identities=20%  Similarity=0.096  Sum_probs=28.0

Q ss_pred             CCCCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChh
Q 017143            1 MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQ   44 (376)
Q Consensus         1 m~~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~   44 (376)
                      |+.+  -||+|||+|..|...+..|++.. ...+++ |++++..
T Consensus         1 m~~~--KrVaIIGaG~sGl~~A~~L~~~~-~~~~v~-vfEk~~~   40 (335)
T d2gv8a1           1 LPTI--RKIAIIGAGPSGLVTAKALLAEK-AFDQVT-LFERRGS   40 (335)
T ss_dssp             CCSC--CEEEEECCSHHHHHHHHHHHTTT-CCSEEE-EECSSSS
T ss_pred             CCCC--CeEEEECcCHHHHHHHHHHHHhC-CCCCEE-EEECCCC
Confidence            6654  47999999999987777776541 345765 6777653

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=84.42  E-value=1.2  Score=36.25  Aligned_cols=71  Identities=20%  Similarity=0.256  Sum_probs=42.3

Q ss_pred             eEEEE-e-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC-------CccCCHHHHhhC-----C
Q 017143            8 KYGII-G-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL-------KVFPGHQELLDS-----G   73 (376)
Q Consensus         8 ~v~ii-G-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~-----~   73 (376)
                      ||+|| | .+.+|+..+..|++.   +.+|+ +++++++.++++.+-.++++..+       .-.++.+++++.     .
T Consensus         3 KValITGas~GIG~aia~~la~~---Ga~V~-i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g   78 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKE---GLRVF-VCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYG   78 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHT---TCEEE-EEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC---CCEEE-EEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            67766 5 466999988888885   88865 67899886554433333444321       111234444442     3


Q ss_pred             CCCEEEEeC
Q 017143           74 LCDVVVVST   82 (376)
Q Consensus        74 ~~D~V~i~t   82 (376)
                      .+|+++-+.
T Consensus        79 ~iDilVnnA   87 (257)
T d2rhca1          79 PVDVLVNNA   87 (257)
T ss_dssp             SCSEEEECC
T ss_pred             CCCEEEecc
Confidence            578777654

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.08  E-value=0.72  Score=33.67  Aligned_cols=78  Identities=19%  Similarity=0.204  Sum_probs=46.4

Q ss_pred             CceeEEEEeCChh----------hHHHHHHhhhhcCCCcEEEEEeCCChhhH-------HHHHHHHHhcCCCCCccCCHH
Q 017143            5 DTVKYGIIGMGMM----------GREHFINLHHLRSQGVSVVCIADPHLQSR-------QQALKLANAFDWPLKVFPGHQ   67 (376)
Q Consensus         5 ~~~~v~iiG~G~~----------g~~~~~~~~~~~~~~~~~~~v~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~   67 (376)
                      ..-||+|+|+.+=          +...+..|..   .+.+| .++|+--...       +.........+  ...+++.+
T Consensus        12 ~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~---~g~~V-~~~DP~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~   85 (136)
T d1mv8a3          12 DTRKVGLLGLSFKAGTDDLRESPLVELAEMLIG---KGYEL-RIFDRNVEYARVHGANKEYIESKIPHVS--SLLVSDLD   85 (136)
T ss_dssp             SCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHH---TTCEE-EEECHHHHHHTTSSSCHHHHHHTSHHHH--TTBCSCHH
T ss_pred             CCCEEEEEEEEECCCCcchhcCHHHHHHHHHhh---hhccc-cccCCCCCHHHHhhhhhhhhhhcccccc--ceeehhhh
Confidence            4569999999761          1234444544   47775 5788632211       00111111112  23678999


Q ss_pred             HHhhCCCCCEEEEeCCCCccHHH
Q 017143           68 ELLDSGLCDVVVVSTPNMTHYQI   90 (376)
Q Consensus        68 ~~l~~~~~D~V~i~t~~~~h~~~   90 (376)
                      +++..  .|+|+|+|++..=.++
T Consensus        86 e~i~~--~D~ivi~t~h~~f~~l  106 (136)
T d1mv8a3          86 EVVAS--SDVLVLGNGDELFVDL  106 (136)
T ss_dssp             HHHHH--CSEEEECSCCGGGHHH
T ss_pred             hhhhh--ceEEEEEeCCHHHHHH
Confidence            99987  7999999998754343

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.82  E-value=1.4  Score=39.00  Aligned_cols=34  Identities=32%  Similarity=0.392  Sum_probs=27.4

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPH   42 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~   42 (376)
                      ..||.|||+|.+|...+..|...   ++.-+.++|.|
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~~---Gvg~i~lvD~D   70 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLALS---GFRQIHVIDMD   70 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHTT---TCCCEEEECCC
T ss_pred             cCeEEEECCCHHHHHHHHHHHHc---CCCeEEEEECC
Confidence            35999999999999999998876   66556677764

>d1u6ka1 c.127.1.1 (A:2-283) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)
superfamily: F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)
family: F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)
domain: F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=83.68  E-value=4.3  Score=32.01  Aligned_cols=86  Identities=12%  Similarity=0.098  Sum_probs=47.7

Q ss_pred             ceeEEEEeCChhhHHHHHHh-hhhc--CCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeC
Q 017143            6 TVKYGIIGMGMMGREHFINL-HHLR--SQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~-~~~~--~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t   82 (376)
                      .+|||||=+|++|...+-.| ...+  .+++++.-+.+-..-.-+.....++          ..-+++++-+||.|++.+
T Consensus         2 vvKiG~iK~GNIg~s~~~dLlLDErAdRedi~vrv~gsGaKM~pe~~e~~~~----------~~~~~~~~~~pDf~i~is   71 (282)
T d1u6ka1           2 VAKAIFIKCGNLGTSMMMDMLLDERADREDVEFRVVGTSVKMDPECVEAAVE----------MALDIAEDFEPDFIVYGG   71 (282)
T ss_dssp             CEEEEEEECSCCHHHHHTTGGGSTTSCCSSEEEEEEECTTCCSHHHHHHHHH----------HHHHHHHHHCCSEEEEEC
T ss_pred             eeEEEEEEecccchHHHHHHHHhhhhcccCceEEEeccccCcCHHHHHHHHH----------HHHHHHHhcCCCEEEEEC
Confidence            47999999999998655444 2222  2577766444332211112222111          122345555699999999


Q ss_pred             CCCcc--HHHHHHHHcCCCCCe
Q 017143           83 PNMTH--YQILMDIINHPKPHH  102 (376)
Q Consensus        83 ~~~~h--~~~~~~al~~~~g~~  102 (376)
                      ||..-  ..-+++.|++ +|++
T Consensus        72 PN~a~PGP~~ARE~l~~-~giP   92 (282)
T d1u6ka1          72 PNPAAPGPSKAREMLAD-SEYP   92 (282)
T ss_dssp             SCTTSHHHHHHHHHHHT-SSSC
T ss_pred             CCCCCCCcHHHHHHHHh-cCCC
Confidence            98643  3345555553 3555

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=83.60  E-value=1.2  Score=37.45  Aligned_cols=74  Identities=12%  Similarity=0.122  Sum_probs=44.5

Q ss_pred             eEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhh-HHHHHHHHHhcCCC-----CCccCCHHHHhhCCCCCEEEE
Q 017143            8 KYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQS-RQQALKLANAFDWP-----LKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         8 ~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      ||.|.| +|++|...+..|.+.   +.+|+++-+.+... .+....+...-++.     +.-.++++++++...+|.|+-
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~---g~~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih   78 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQ---GIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFH   78 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT---TCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHC---cCEEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEe
Confidence            788888 599999999888875   78998863333221 12223332222322     122234666776656899886


Q ss_pred             eCCC
Q 017143           81 STPN   84 (376)
Q Consensus        81 ~t~~   84 (376)
                      +.-.
T Consensus        79 ~aa~   82 (338)
T d1orra_          79 LAGQ   82 (338)
T ss_dssp             CCCC
T ss_pred             eccc
Confidence            6543

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.39  E-value=0.3  Score=42.24  Aligned_cols=31  Identities=26%  Similarity=0.376  Sum_probs=25.6

Q ss_pred             CceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEE
Q 017143            5 DTVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCI   38 (376)
Q Consensus         5 ~~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v   38 (376)
                      +.|||.|.| +|++|...+..|.+.   +.+|+++
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~---g~~V~~~   45 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHE---GHYVIAS   45 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHT---TCEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC---cCEEEEE
Confidence            358999999 699999998888774   7788865

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=82.87  E-value=1.8  Score=33.42  Aligned_cols=72  Identities=18%  Similarity=0.175  Sum_probs=46.2

Q ss_pred             ceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHH-HHHHHhcCCCC-----CccCCHHHHhhCCCCCEE
Q 017143            6 TVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQA-LKLANAFDWPL-----KVFPGHQELLDSGLCDVV   78 (376)
Q Consensus         6 ~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~l~~~~~D~V   78 (376)
                      --++.|.| .|.+|......+.+.   +.+|+ +++|++++.+.. +++.....+.+     ...++.++++..  +|+|
T Consensus        23 gK~vlItGasgGIG~~ia~~la~~---G~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--iDil   96 (191)
T d1luaa1          23 GKKAVVLAGTGPVGMRSAALLAGE---GAEVV-LCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKG--AHFV   96 (191)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHT---TCEEE-EEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTT--CSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhh---ccchh-hcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcC--cCee
Confidence            35788888 688999999999886   78865 688988865433 33333344331     112344555544  8988


Q ss_pred             EEeCC
Q 017143           79 VVSTP   83 (376)
Q Consensus        79 ~i~t~   83 (376)
                      +-++.
T Consensus        97 in~Ag  101 (191)
T d1luaa1          97 FTAGA  101 (191)
T ss_dssp             EECCC
T ss_pred             eecCc
Confidence            87654

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=82.82  E-value=1.6  Score=35.97  Aligned_cols=140  Identities=13%  Similarity=0.110  Sum_probs=76.7

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-CCc-cCCHHHHhhCCCCCEEEEeC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LKV-FPGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~l~~~~~D~V~i~t   82 (376)
                      ++.+|.=+|||. |--.+......  +..++++ +|.+++..+.|++=++.+++. +.. ..|+-+.+....+|+| |+.
T Consensus       108 ~~~~vlDlGtGS-G~I~i~la~~~--p~~~v~a-vDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlI-vsN  182 (274)
T d2b3ta1         108 QPCRILDLGTGT-GAIALALASER--PDCEIIA-VDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMI-VSN  182 (274)
T ss_dssp             SCCEEEEETCTT-SHHHHHHHHHC--TTSEEEE-ECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEE-EEC
T ss_pred             cccceeeeehhh-hHHHHHHHhhC--Ccceeee-ccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEE-Eec
Confidence            467899999984 22222223444  7889887 699998777777767777775 322 3455555555568965 777


Q ss_pred             CCCccHHHHHHHHcCCCCCeEEEecCCCCCH-----HHHHHHHHHHHh---CCCeEEEEeeccccCHHHHHHHHHHHcCC
Q 017143           83 PNMTHYQILMDIINHPKPHHVLVEKPLCTTV-----ADCKKVVDAARK---RPDILVQVGLEYRYMPPVAKLIQIVKSGS  154 (376)
Q Consensus        83 ~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~-----~e~~~l~~~a~~---~~~~~~~v~~~~r~~p~~~~~k~~i~~g~  154 (376)
                      ||.-...-. ..+.  .  -+-.|-..|+..     .-.+++.+.+.+   .+|. +.+-+..  . ....+++++++..
T Consensus       183 PPYi~~~~~-~~~~--~--v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~-l~lEig~--~-q~~~v~~~l~~~g  253 (274)
T d2b3ta1         183 PPYIDEQDP-HLQQ--G--DVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGF-LLLEHGW--Q-QGEAVRQAFILAG  253 (274)
T ss_dssp             CCCBCTTCH-HHHS--S--GGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEE-EEEECCS--S-CHHHHHHHHHHTT
T ss_pred             chhhhhhhh-cccc--c--ccccchhhhcccccccchHHHHHHHHHHHhcCCCCE-EEEEECc--h-HHHHHHHHHHHCC
Confidence            876433222 2333  2  122455555543     335566666632   1232 2222222  1 1355566665443


Q ss_pred             CCce
Q 017143          155 IGQV  158 (376)
Q Consensus       155 iG~i  158 (376)
                      +..|
T Consensus       254 f~~i  257 (274)
T d2b3ta1         254 YHDV  257 (274)
T ss_dssp             CTTC
T ss_pred             CCeE
Confidence            4444

>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=82.47  E-value=5.3  Score=29.56  Aligned_cols=116  Identities=11%  Similarity=0.081  Sum_probs=58.3

Q ss_pred             eeEEEEeCCh-hhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcC-----CCC-------CccCCHHHHhhCC
Q 017143            7 VKYGIIGMGM-MGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFD-----WPL-------KVFPGHQELLDSG   73 (376)
Q Consensus         7 ~~v~iiG~G~-~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~-----~~~-------~~~~~~~~~l~~~   73 (376)
                      -||+||+.+. .|......+..   .++++.   ..+++..++.+++-..+.     +++       .....++.+++++
T Consensus         4 ~rvaiit~sGG~~~l~aD~~~~---~Gl~l~---~l~~~t~~~L~~~lp~~~~~~NPlD~~~~~~~~~~~~~l~~~~~d~   77 (163)
T d2csua3           4 NKVAIMTNAGGPGVLTADELDK---RGLKLA---TLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTAKLLLQDP   77 (163)
T ss_dssp             SEEEEEESCHHHHHHHHHHHHT---TTCEEC---CCCHHHHHHHHHHSCTTCEESSEEECCTTCCHHHHHHHHHHHHHST
T ss_pred             CeEEEEECChHHHHHHHHHHHH---cCCccC---CCCHHHHHHHHHhCCCcccCCCcccccCCCCHHHHHHHHHHHHcCC
Confidence            5899999754 55555555555   478854   556665444444432221     000       0112356677788


Q ss_pred             CCCEEEE-eCCCC-------ccHHHHHHHHc-CCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEE
Q 017143           74 LCDVVVV-STPNM-------THYQILMDIIN-HPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQ  132 (376)
Q Consensus        74 ~~D~V~i-~t~~~-------~h~~~~~~al~-~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~  132 (376)
                      ++|+|++ ..++.       .....+..+++ .+..|+|++---......++++   .. ++.|++++
T Consensus        78 ~vd~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpv~~~~~~~~~~~~~~~---~l-~~~Gip~f  141 (163)
T d2csua3          78 NVDMLIAICVVPTFAGMTLTEHAEGIIRAVKEVNNEKPVLAMFMAGYVSEKAKE---LL-EKNGIPTY  141 (163)
T ss_dssp             TCSEEEEEEECCCSTTCCSSHHHHHHHHHHHHHCCCCCEEEEEECTTTTHHHHH---HH-HTTTCCEE
T ss_pred             CcCEEEEeeccCCcccccHHHHHHHHHHHHHHhcCCCcEEEEECCCCChHHHHH---HH-HHCCCCcC
Confidence            9998764 32211       12333333332 1134666654333334444444   44 23487765

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=82.19  E-value=1.9  Score=34.97  Aligned_cols=46  Identities=20%  Similarity=0.208  Sum_probs=31.3

Q ss_pred             eEEEE-eC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcC
Q 017143            8 KYGII-GM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFD   57 (376)
Q Consensus         8 ~v~ii-G~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~   57 (376)
                      ||++| |. +.+|+.....|++.   +.+|+ +++++++.++++.+..+++|
T Consensus        11 KvalITGas~GIG~a~a~~la~~---Ga~V~-~~~r~~~~l~~~~~~l~~~g   58 (251)
T d2c07a1          11 KVALVTGAGRGIGREIAKMLAKS---VSHVI-CISRTQKSCDSVVDEIKSFG   58 (251)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTT---SSEEE-EEESSHHHHHHHHHHHHTTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHc---CCEEE-EEECCHHHHHHHHHHHHhcC
Confidence            66666 74 66999988888875   78865 67899886554443334444

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=81.90  E-value=1.4  Score=35.91  Aligned_cols=70  Identities=20%  Similarity=0.079  Sum_probs=49.2

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCC-ccCCHHHHhhCCCCCEEEEe
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLK-VFPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~D~V~i~   81 (376)
                      .-+|.=+|||. |..-+ .+++.   +.+++| +|.|+...+.+++-++..|+..+ ...+.++.+....+|+|+..
T Consensus       121 g~~VLDiGcGs-G~l~i-~aa~~---g~~V~g-vDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~an  191 (254)
T d2nxca1         121 GDKVLDLGTGS-GVLAI-AAEKL---GGKALG-VDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVAN  191 (254)
T ss_dssp             TCEEEEETCTT-SHHHH-HHHHT---TCEEEE-EESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEE
T ss_pred             cCEEEEcccch-hHHHH-HHHhc---CCEEEE-EECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhc
Confidence            35899999994 54322 34443   678886 59999988888877777777633 23577777776678988754

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=81.85  E-value=1.6  Score=33.72  Aligned_cols=71  Identities=20%  Similarity=0.157  Sum_probs=46.8

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-C-CccCCHHHHhhCCCCCEEEEeC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-L-KVFPGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~l~~~~~D~V~i~t   82 (376)
                      +-||.=|||| .|.. ...+++.   +++++| +|.++..++.+++.+++.+++ + ....+++++.-+..+|+|+...
T Consensus        31 ~grvLDiGcG-~G~~-~~~la~~---g~~v~g-vD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I~~~~  103 (198)
T d2i6ga1          31 PGRTLDLGCG-NGRN-SLYLAAN---GYDVTA-WDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTV  103 (198)
T ss_dssp             SCEEEEETCT-TSHH-HHHHHHT---TCEEEE-EESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEEEEES
T ss_pred             CCcEEEECCC-CCHH-HHHHHHH---hhhhcc-ccCcHHHHHHHHHHhhhccccchhhhheecccccccccccEEEEee
Confidence            3489999999 5543 3334443   788887 699999888888888777776 1 1224455444455678887543

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.74  E-value=1.9  Score=30.70  Aligned_cols=50  Identities=16%  Similarity=0.039  Sum_probs=34.0

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCC--------hhhHHHHHHHHHhcCCC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPH--------LQSRQQALKLANAFDWP   59 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~--------~~~~~~~~~~~~~~~~~   59 (376)
                      +-|++|||.|.+|-..+..++++   +.+++- +.++        ++-.+...+..++.|+.
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~---G~~Vtl-v~~~~~~l~~~d~~~~~~~~~~l~~~Gv~   79 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSAL---GSKTSL-MIRHDKVLRSFDSMISTNCTEELENAGVE   79 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT---TCEEEE-ECSSSSSCTTSCHHHHHHHHHHHHHTTCE
T ss_pred             CCEEEEEcCCccHHHHHHHHhcC---CcEEEE-EeeccccccchhhHHHHHHHHHHHHCCCE
Confidence            35899999999999988888886   778764 4443        22223334444556765

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=81.69  E-value=0.8  Score=38.32  Aligned_cols=37  Identities=22%  Similarity=0.279  Sum_probs=28.7

Q ss_pred             CCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh
Q 017143            3 ANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL   43 (376)
Q Consensus         3 ~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~   43 (376)
                      ..++-||+|||+|..|...+..|++.   +++|+ |++.++
T Consensus        27 ~~~pkkV~IIGaG~aGLsaA~~L~~~---G~~V~-vlE~~~   63 (370)
T d2iida1          27 TSNPKHVVIVGAGMAGLSAAYVLAGA---GHQVT-VLEASE   63 (370)
T ss_dssp             CSSCCEEEEECCBHHHHHHHHHHHHH---TCEEE-EECSSS
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHC---CCCEE-EEeCCC
Confidence            34567999999999998877777775   78855 777654

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.65  E-value=1.5  Score=32.36  Aligned_cols=31  Identities=19%  Similarity=0.329  Sum_probs=25.2

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEe
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIA   39 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~   39 (376)
                      --|+.|||.|.+|..-+..+.+.   +.+++-|.
T Consensus        13 gkrvLViGgG~va~~ka~~Ll~~---GA~VtVva   43 (150)
T d1kyqa1          13 DKRILLIGGGEVGLTRLYKLMPT---GCKLTLVS   43 (150)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGG---TCEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC---CCEEEEEe
Confidence            36899999999999888888886   67777553

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=81.44  E-value=1.1  Score=35.03  Aligned_cols=37  Identities=27%  Similarity=0.472  Sum_probs=28.8

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChh
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQ   44 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~   44 (376)
                      +||.|||.|.-|...+..+.+..-.+++.++ ++.|..
T Consensus         1 ~kI~viGvGGaG~n~v~~l~~~~~~~v~~ia-inTD~~   37 (194)
T d1w5fa1           1 LKIKVIGVGGAGNNAINRMIEIGIHGVEFVA-VNTDLQ   37 (194)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHHCCTTEEEEE-EESCHH
T ss_pred             CeEEEEEeCchHHHHHHHHHHcCCCceEEEE-EcCCHH
Confidence            6899999999999888877665446788775 466665

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=81.35  E-value=1.3  Score=35.81  Aligned_cols=68  Identities=18%  Similarity=0.247  Sum_probs=40.8

Q ss_pred             eEEEE-eC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcC-------CCCCccCCHHHHhhC-----C
Q 017143            8 KYGII-GM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFD-------WPLKVFPGHQELLDS-----G   73 (376)
Q Consensus         8 ~v~ii-G~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~-----~   73 (376)
                      |++|| |. +.+|+.....|.+.   +.+|+ ++++++++   +++++++++       .++.-.++.+++++.     .
T Consensus         5 K~alITGas~GIG~a~a~~l~~~---G~~Vv-~~~r~~~~---l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (243)
T d1q7ba_           5 KIALVTGASRGIGRAIAETLAAR---GAKVI-GTATSENG---AQAISDYLGANGKGLMLNVTDPASIESVLEKIRAEFG   77 (243)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHT---TCEEE-EEESSHHH---HHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHc---CCEEE-EEeCCHHH---HHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhhcccC
Confidence            45555 74 66999988888885   88876 67898874   445554433       111122334444442     3


Q ss_pred             CCCEEEEeC
Q 017143           74 LCDVVVVST   82 (376)
Q Consensus        74 ~~D~V~i~t   82 (376)
                      .+|+++-+.
T Consensus        78 ~iDilVnnA   86 (243)
T d1q7ba_          78 EVDILVNNA   86 (243)
T ss_dssp             SCSEEEECC
T ss_pred             Ccceehhhh
Confidence            588777543

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=81.32  E-value=0.81  Score=36.99  Aligned_cols=36  Identities=22%  Similarity=0.302  Sum_probs=28.7

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChh
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQ   44 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~   44 (376)
                      ...||+|||.|..|......|++.   +++++ |++++++
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~---G~~v~-v~Er~~~   38 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDA---GVDVD-VYERSPQ   38 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHT---TCEEE-EECSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHC---CCCEE-EEeCCCC
Confidence            357999999999998877777774   88866 7887554

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=81.28  E-value=1.3  Score=35.85  Aligned_cols=90  Identities=17%  Similarity=0.049  Sum_probs=53.9

Q ss_pred             eEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-----CCccCCHHHHhhC-----CCCC
Q 017143            8 KYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-----LKVFPGHQELLDS-----GLCD   76 (376)
Q Consensus         8 ~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~-----~~~D   76 (376)
                      .+.|.| .+.+|+..+..|.+.   +.+|+ +++++++   ++++++++.+..     +.-.++.+++++.     ..+|
T Consensus         7 ~~lITGas~GIG~aia~~l~~~---G~~V~-~~~r~~~---~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   79 (242)
T d1ulsa_           7 AVLITGAAHGIGRATLELFAKE---GARLV-ACDIEEG---PLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLD   79 (242)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT---TCEEE-EEESCHH---HHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHC---CCEEE-EEECCHH---HHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhcCCce
Confidence            345556 466999999888885   88865 6788887   455666655432     1122344555443     3578


Q ss_pred             EEEEeCCCCccHHHHHHHHcCCCCCeEEEecCC-CCCHHHHHHHHHHH
Q 017143           77 VVVVSTPNMTHYQILMDIINHPKPHHVLVEKPL-CTTVADCKKVVDAA  123 (376)
Q Consensus        77 ~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~-a~~~~e~~~l~~~a  123 (376)
                      +++-+.-..                   --+|+ ..+.++.+++.+.-
T Consensus        80 ilVnnAG~~-------------------~~~~~~~~~~~~~~~~~~vN  108 (242)
T d1ulsa_          80 GVVHYAGIT-------------------RDNFHWKMPLEDWELVLRVN  108 (242)
T ss_dssp             EEEECCCCC-------------------CCCCGGGCCHHHHHHHHHHH
T ss_pred             EEEECCccc-------------------ccCchhhCcchhhhcccccc
Confidence            776654211                   11333 46778877777654

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.19  E-value=1.2  Score=36.68  Aligned_cols=41  Identities=20%  Similarity=0.265  Sum_probs=30.0

Q ss_pred             eeEEEE--eCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHH
Q 017143            7 VKYGII--GMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQAL   50 (376)
Q Consensus         7 ~~v~ii--G~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~   50 (376)
                      .||+||  |.+.+|......|.+.  .+..|+ +++|++++.+.+.
T Consensus         3 ~rVAlVTGas~GIG~a~A~~la~~--~g~~Vi-~~~r~~~~~~~~~   45 (275)
T d1wmaa1           3 IHVALVTGGNKGIGLAIVRDLCRL--FSGDVV-LTARDVTRGQAAV   45 (275)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHH--SSSEEE-EEESSHHHHHHHH
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHh--CCCEEE-EEECCHHHHHHHH
Confidence            689988  4577899888888875  466655 6789988654443

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.94  E-value=3.6  Score=37.27  Aligned_cols=35  Identities=23%  Similarity=0.260  Sum_probs=28.0

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL   43 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~   43 (376)
                      .-+|.|||+|..|...++.|...   |+.-+.++|.+.
T Consensus        25 ~s~VlvvG~gglG~Ei~knLvl~---GVg~itivD~d~   59 (529)
T d1yova1          25 SAHVCLINATATGTEILKNLVLP---GIGSFTIIDGNQ   59 (529)
T ss_dssp             HCEEEECCCSHHHHHHHHHHHTT---TCSEEEEECCSB
T ss_pred             CCCEEEECCCHHHHHHHHHHHHh---cCCEEEEEcCCc
Confidence            46999999999999999888764   776666777644

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.83  E-value=0.59  Score=38.17  Aligned_cols=36  Identities=22%  Similarity=0.392  Sum_probs=27.7

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChh
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQ   44 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~   44 (376)
                      +++|+|||.|..|......|++.   ++.-|.|++++++
T Consensus         1 ~~~V~IvGaG~aGl~~A~~L~~~---Gi~~V~V~Er~~~   36 (288)
T d3c96a1           1 PIDILIAGAGIGGLSCALALHQA---GIGKVTLLESSSE   36 (288)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT---TCSEEEEEESSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhC---CCCeEEEEeCCCC
Confidence            58999999999999888888775   6644557776543

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=80.64  E-value=2.9  Score=31.88  Aligned_cols=71  Identities=15%  Similarity=0.043  Sum_probs=46.6

Q ss_pred             eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC--CCc-cCCHHHHhhC-CCCCEEEEeC
Q 017143            7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP--LKV-FPGHQELLDS-GLCDVVVVST   82 (376)
Q Consensus         7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~l~~-~~~D~V~i~t   82 (376)
                      -+|.=||||. |..-+ .++.   ...++++ +|.+++.++.+++-++++|+.  +.. ..+..+++.. ..+|+|++..
T Consensus        35 ~~VLDiGcGs-G~~s~-~lA~---~~~~V~a-vD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~  108 (186)
T d1l3ia_          35 DVAVDVGCGT-GGVTL-ELAG---RVRRVYA-IDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGG  108 (186)
T ss_dssp             CEEEEESCTT-SHHHH-HHHT---TSSEEEE-EESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESC
T ss_pred             CEEEEEECCe-Ecccc-cccc---cceEEEE-ecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeC
Confidence            4788899984 32212 2333   2457887 599999888888777788874  222 2567666654 6789988765


Q ss_pred             C
Q 017143           83 P   83 (376)
Q Consensus        83 ~   83 (376)
                      +
T Consensus       109 ~  109 (186)
T d1l3ia_         109 S  109 (186)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=80.39  E-value=1.3  Score=35.65  Aligned_cols=71  Identities=18%  Similarity=0.101  Sum_probs=47.0

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC-CccCCHHHHhhCCCCCEEEEeC
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL-KVFPGHQELLDSGLCDVVVVST   82 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~D~V~i~t   82 (376)
                      .-+|.=||||. |.. ...+++.   +.+++|| |.+++-++.|++-+.+.+..+ -...+.+++-.....|+|++..
T Consensus        42 ~~~iLDiGcGt-G~~-~~~l~~~---~~~v~gv-D~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD~I~~~~  113 (251)
T d1wzna1          42 VRRVLDLACGT-GIP-TLELAER---GYEVVGL-DLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFF  113 (251)
T ss_dssp             CCEEEEETCTT-CHH-HHHHHHT---TCEEEEE-ESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECS
T ss_pred             CCEEEEeCCCC-Ccc-chhhccc---ceEEEEE-eeccccccccccccccccccchheehhhhhcccccccchHhhhh
Confidence            35799999994 443 3345554   6788875 999988777877766666542 2235666655444579877753

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=80.38  E-value=3.6  Score=32.95  Aligned_cols=127  Identities=17%  Similarity=0.128  Sum_probs=72.6

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChh-------hHHHHHHHHHhcC-C---CCCccCCHHHHhhCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQ-------SRQQALKLANAFD-W---PLKVFPGHQELLDSG   73 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~-------~~~~~~~~~~~~~-~---~~~~~~~~~~~l~~~   73 (376)
                      +-.+|+|-|.|.+|......|.+.  .+..++++.|.+-.       ..+...+...+.+ +   +-..+-+.++++.. 
T Consensus        31 ~g~~v~IqGfGnVG~~~a~~L~~~--~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~-  107 (239)
T d1gtma1          31 KGKTIAIQGYGNAGYYLAKIMSED--FGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNITNEELLEL-  107 (239)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT--TCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEEECHHHHHHS-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHh--cCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCeeecccccccc-
Confidence            347999999999998877766553  58999999987521       1123333333322 1   10011256788876 


Q ss_pred             CCCEEEEeCCC-CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHH
Q 017143           74 LCDVVVVSTPN-MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPV  143 (376)
Q Consensus        74 ~~D~V~i~t~~-~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~  143 (376)
                      ++|+.+-|.-. .-+.+.+. -++    ..+++|--=.....++.+++  . ++ |+.+...+-..-....
T Consensus       108 ~~DIl~PcA~~~~I~~~~a~-~i~----ak~I~e~AN~p~t~ea~~~L--~-~r-gI~~iPD~~aNAGGVi  169 (239)
T d1gtma1         108 EVDVLAPAAIEEVITKKNAD-NIK----AKIVAEVANGPVTPEADEIL--F-EK-GILQIPDFLCNAGGVT  169 (239)
T ss_dssp             CCSEEEECSCSCCBCTTGGG-GCC----CSEEECCSSSCBCHHHHHHH--H-HT-TCEEECHHHHTTHHHH
T ss_pred             cccEEeeccccccccHHHHH-hcc----ccEEEecCCCCCCHHHHHHH--H-HC-CCEEecchhhCCccee
Confidence            49998888764 34433332 234    34777763333334555543  3 44 7776655444333333

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.27  E-value=1.4  Score=37.43  Aligned_cols=72  Identities=17%  Similarity=0.202  Sum_probs=40.8

Q ss_pred             EEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHH--HhcCCC-----CCccCCHHHHhhCCCCCEEEE
Q 017143            9 YGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLA--NAFDWP-----LKVFPGHQELLDSGLCDVVVV   80 (376)
Q Consensus         9 v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~l~~~~~D~V~i   80 (376)
                      |.|.| +|++|...+..|.+.   +.+|+++-..+...........  ..-++.     +.-..+++.++....+|+|+-
T Consensus         4 ILVTGatGfIG~~lv~~Ll~~---g~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vih   80 (347)
T d1z45a2           4 VLVTGGAGYIGSHTVVELIEN---GYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIH   80 (347)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT---TCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEEE
T ss_pred             EEEeCCCcHHHHHHHHHHHHC---cCeEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhccCCCEEEE
Confidence            66778 599999998888885   7888886332222111121111  112332     111223555666667999986


Q ss_pred             eCC
Q 017143           81 STP   83 (376)
Q Consensus        81 ~t~   83 (376)
                      +.-
T Consensus        81 lAa   83 (347)
T d1z45a2          81 FAG   83 (347)
T ss_dssp             CCS
T ss_pred             ccc
Confidence            543

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.16  E-value=5.4  Score=32.07  Aligned_cols=51  Identities=14%  Similarity=-0.064  Sum_probs=34.5

Q ss_pred             CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC
Q 017143            5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP   59 (376)
Q Consensus         5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~   59 (376)
                      +.+|+.=||+|.-.-.. ....+.  ++.+++| +|.+++..+.|++=++..++.
T Consensus        61 ~~~~~LDiGtGsg~I~~-~l~~~~--~~~~~~~-~Di~~~al~~A~~N~~~n~l~  111 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYP-LLGATL--NGWYFLA-TEVDDMCFNYAKKNVEQNNLS  111 (250)
T ss_dssp             CCCEEEEESCTTTTHHH-HHHHHH--HCCEEEE-EESCHHHHHHHHHHHHHTTCT
T ss_pred             ccceEEEeCCCchHHHH-HHHHhC--CCccccc-eecCHHHHHHHHHHHHHhCCC
Confidence            35799999998532222 122344  6889887 699999877777766666654

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=80.15  E-value=1.3  Score=35.68  Aligned_cols=71  Identities=17%  Similarity=0.157  Sum_probs=49.2

Q ss_pred             ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC---CccCCHHHHhhCCCCCEEEEe
Q 017143            6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL---KVFPGHQELLDSGLCDVVVVS   81 (376)
Q Consensus         6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~D~V~i~   81 (376)
                      --+|.=||||. |.. ...+++.  .+..++|| |.++.-.+.+++.+++.|+..   -...|+.+++.+..+|+|+..
T Consensus        34 g~~VLDiGCG~-G~~-~~~la~~--~~~~v~Gv-D~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~~fD~v~~~  107 (245)
T d1nkva_          34 GTRILDLGSGS-GEM-LCTWARD--HGITGTGI-DMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACV  107 (245)
T ss_dssp             TCEEEEETCTT-CHH-HHHHHHH--TCCEEEEE-ESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSCEEEEEEE
T ss_pred             CCEEEEEcCCC-CHH-HHHHHHh--cCCEEEEE-ecccchhhHHHHHHHHhhccccchhhhhHHhhccccCceeEEEEE
Confidence            36899999994 433 3334444  46888885 999988888888888887641   234577777666678988754