Citrus Sinensis ID: 017146

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370------
Protein Sequence
MDPREPPPQLHQHQHQHQQPNIMMGPTSYHTNAMMPPNAAAGAAARFSFNPLSSSQSQSQSQSESQSQLQPKQPLDSLPHGGVFDGSPSLRTGGGSFSIDPAKKKRGRPRKYTPDGNIALRLATTAQSPGSLADSGGGGGGAAGSASEPSAKRHRGRPPGSGKKQLDALGGVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYEGRFEIISLSGSFLLSDNNGNRSRSGGLSVSLAGSDGRVLGGLVAGMLMAASPVQVIVGSFIAEGKKSNSNFLKSGPSSAPTPHMLSFGAPMTTSSPPSQGASSESSDDNGSSPLNRGAGLYNNAAQQPIHNMHMYQLWAGQTSQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccHHHHHHHHHHccccEEEEEccccEEEEEEEccccccccEEEEEEEEEEEEEEEccccccccccccccccEEEEEccccccEEcEEEccEEEEcccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEcccEEEEEEEEcccccccEEEEEcEEEEEEEccccccccccccccccccEEEEEEcccccEEEccHHHHEEEcccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccc
Coil and Loop (DISEMBL)
mdprepppqlhqhqhqhqqpnimmgptsyhtnammppnaaagaaarfsfnplsssqsqsqsqsesqsqlqpkqpldslphggvfdgspslrtgggsfsidpakkkrgrprkytpdgniALRLAttaqspgsladsggggggaagsasepsakrhrgrppgsgkkqldalggvggvgftpHVITVKAGEDISSKIFAfsqqgprtVCILSASGaicnvtlrqptmsggtvtyEGRFEIISLSGsfllsdnngnrsrsgglsvslagsdgrvLGGLVAGMLMAASPVQVIVGSFIAegkksnsnflksgpssaptphmlsfgapmttssppsqgassessddngssplnrgaglynnaaqqpihnmHMYQlwagqtsq
Flexible Loop (DISEMBL)
MDPREPPPQLHQHQHQHQQPNIMMGPTSYHTNAMMPPNAAAGAAARFSFNPLSSSQSQSQSQSESQSQLQPKQPLDSLPHGGVFDgspslrtgggsfsidpakkkrgrprkytpdgNIALRLATTAQSPGSLADSGGGGGGAagsasepsakrhrgrppgsgKKQLDALGGVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICnvtlrqptmsggtVTYEGRFEIISLSGSFLLSDNNGNRSRSGGLSVSLAGSDGRVLGGLVAGMLMAASPVQVIVGSFIAEGKKSNSNFLKSGPSSAPTPHMLSFGAPMTTSSPPSQGASSESSDDNGSSPLNRGAGLYNNAAQQPIHNMHMYQLWAGQTSQ
Low Complexity Region (SEG)
MDPREpppqlhqhqhqhqqpNIMMGPTSYHTnammppnaaagaaaRFSFNplsssqsqsqsqsesqsqlqpkqpldslpHGGVFDGSPSLRTGGGSFSIDPAKKKRGRPRKYTPDGNIALRLATTAQspgsladsggggggaagsasepsaKRHRGRPPGSGKKQLDALGGVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYEGRFEIISLSGSFLLSDNNGNRSRSGGLSVSLAGSDGRVLGGLVAGMLMAASPVQVIVGSFIAEGKKSNSNFLKSGPSSAPTPHMLSFGAPMTTssppsqgassessddngssPLNRGAGLYNNAAQQPIHNMHMYQLWAGQTSQ
Disordered region (IsUnstruct)
***********************************************************************************************************************************************************************ALGGVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYEGRFEIISLSGSFLL****************LAGSDGRVLGGLVAGMLMAASPVQVIVGSFIA******************************************************************IHNMHMYQLW******
Disordered Region (DISOPRED)
***************************************************************************************************************YT************************************************************GVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYEGRFEIISLSGSFLL***********GLSVSLAGSDGRVLGGLVAGMLMAASPVQVIVGSFI****************************************************************************W******
Disordered Region (DISEMBL)
*******************PNIMMGPTSYHTNAMMPPNAAAGAAARFSFN************************LDSLPHGGVFDGSPSLRTGGGSFSIDP*********KYTPDGNIALRLATTA************************************KKQLDALGGVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYEGRFEIISLSGSFLLSDNNGNRSRSGGLSVSLAGSDGRVLGGLVAGMLMAASPVQVIVGSFIAEGKKSNSNFLKSGPSSAPTPHMLSFGAP**********************PLNRGAGLYNNAAQQPIHNMHMYQLWAGQTSQ
Disordered Region (DISPRO)
******************QPNIMMGP****************AAARFS******************************************************************DGNIALRLA***************************************************VGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYEGRFEIISLSGSFLLSDNNGNRSRSGGLSVSLAGSDGRVLGGLVAGMLMAASPVQVIVGSFIAE****************************************************************P*H**************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDPREPPPQLHQHQHQHQQPNIMMGPTSYHTNAMMPPNAAAGAAARFSFNPLSSSQSQSQSQSESQSQLQPKQPLDSLPHGGVFDGSPSLRTGGGSFSIDPAKKKRGRPRKYTPDGNIALRLATTAQSPGSLADSGGGGGGAAGSASEPSAKRHRGRPPGSGKKQLDALGGVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYEGRFEIISLSGSFLLSDNNGNRSRSGGLSVSLAGSDGRVLGGLVAGMLMAASPVQVIVGSFIAEGKKSNSNFLKSGPSSAPTPHMLSFGAPMTTSSPPSQGASSESSDDNGSSPLNRGAGLYNNAAQQPIHNMHMYQLWAGQTSQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	376	2.2.26 [Sep-21-2011]
Q9S7C9	311	Putative DNA-binding prot	no	no	0.367	0.443	0.381	5e-09

>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1

 Score = 62.4 bits (150), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/152 (38%), Positives = 80/152 (52%), Gaps = 14/152 (9%)

Query: 152 KRHRGRPPGSGKKQLDALGGVGGV--GFTPHVITVKAGEDISSKIFAFSQQGPRTVCILS 209
           KR RGRPPGS  K    +            HV+ V  G DI   +  ++++  R V +L 
Sbjct: 86  KRPRGRPPGSKNKAKPPIIVTRDSPNALRSHVLEVSPGADIVESVSTYARRRGRGVSVLG 145

Query: 210 ASGAICNVTLRQPTM---------SGGTVTYEGRFEIISLSGSFLLSDNNGNRSRSGGLS 260
            +G + NVTLRQP            GG VT  GRFEI+SL+G+ L          +GGLS
Sbjct: 146 GNGTVSNVTLRQPVTPGNGGGVSGGGGVVTLHGRFEILSLTGTVLPPPAP---PGAGGLS 202

Query: 261 VSLAGSDGRVLGGLVAGMLMAASPVQVIVGSF 292
           + LAG  G+V+GG V   L+A++PV ++  SF
Sbjct: 203 IFLAGGQGQVVGGSVVAPLIASAPVILMAASF 234

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	376
255557601	376	DNA binding protein, putative [Ricinus c	0.885	0.885	0.692	1e-120
224138096	286	predicted protein [Populus trichocarpa]	0.742	0.975	0.768	1e-109
224126489	375	predicted protein [Populus trichocarpa]	0.901	0.904	0.65	1e-107
225427270	353	PREDICTED: uncharacterized protein LOC10	0.851	0.906	0.632	1e-105
449462009	362	PREDICTED: uncharacterized protein LOC10	0.912	0.947	0.569	1e-99
356512006	288	PREDICTED: putative DNA-binding protein	0.726	0.947	0.697	3e-90
356497039	338	PREDICTED: uncharacterized protein LOC10	0.885	0.985	0.506	2e-76
449461555	363	PREDICTED: uncharacterized protein LOC10	0.771	0.798	0.576	1e-75
356540605	339	PREDICTED: uncharacterized protein LOC10	0.678	0.752	0.6	4e-75
357476667	334	AT-hook protein [Medicago truncatula] gi	0.829	0.934	0.505	5e-75

>gi|255557601|ref|XP_002519830.1| DNA binding protein, putative [Ricinus communis] gi|223540876|gb|EEF42434.1| DNA binding protein, putative [Ricinus communis]

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 255/368 (69%), Positives = 281/368 (76%), Gaps = 35/368 (9%)

Query: 21  NIMMGPTSYHTNA-----MMPPNAAAGAAARFSFNPLSSSQSQSQSQSESQSQLQPKQPL 75
           N+M+G   Y  NA     M+ PN        F FN +   ++Q   Q  S          
Sbjct: 26  NMMLG--GYSNNAHPAMTMINPNIPPSG---FPFNSVGPPRTQPSKQPSSD--------- 71

Query: 76  DSLPHGGVFDGSPSLRTGGGSFSIDPAKKKRGRPRKYTPDGNIALRLATTAQS------P 129
                GG+FDGS    + G  FS+DPAKKKRGRPRKYTPDGNIAL L+ T  S      P
Sbjct: 72  -----GGLFDGSSPPSSSGMRFSMDPAKKKRGRPRKYTPDGNIALGLSPTPISSSATSLP 126

Query: 130 GSLADSGGGGGGAAGS---ASEPSAKRHRGRPPGSGKKQLDALGGVGGVGFTPHVITVKA 186
             +ADSG G G   G+   AS+P +KR+RGRPPGSGKKQLDALGGVGGVGFTPHVITVKA
Sbjct: 127 PHVADSGSGVGVGIGTPAIASDPPSKRNRGRPPGSGKKQLDALGGVGGVGFTPHVITVKA 186

Query: 187 GEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYEGRFEIISLSGSFLL 246
           GEDI+SKI AFSQQGPRTVCILSA+GAICNVTLRQP MSGGTVTYEGR+EIISLSGSFLL
Sbjct: 187 GEDIASKIMAFSQQGPRTVCILSANGAICNVTLRQPAMSGGTVTYEGRYEIISLSGSFLL 246

Query: 247 SDNNGNRSRSGGLSVSLAGSDGRVLGGLVAGMLMAASPVQVIVGSFIAEGKKSNSNFLKS 306
           S+NNGNRSRSGGLSVSLAGSDGRVLGG VAGMLMAASPVQVIVGSFIA+GKKSNSN  KS
Sbjct: 247 SENNGNRSRSGGLSVSLAGSDGRVLGGGVAGMLMAASPVQVIVGSFIADGKKSNSNIHKS 306

Query: 307 GPSSAPTPHMLSFGAPMTTSSPPSQGASSESSDDNGSSPLNRGAGLYNNAAQQPIHNMHM 366
           GPSSAPT  ML+FGAPMTTSSPPSQG SSESSD+NGSSPLNR   +Y+NA  QP+HNM+M
Sbjct: 307 GPSSAPTSQMLNFGAPMTTSSPPSQGVSSESSDENGSSPLNRDPPIYSNAT-QPLHNMNM 365

Query: 367 Y-QLWAGQ 373
           Y QLWA Q
Sbjct: 366 YHQLWAAQ 373

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138096|ref|XP_002326517.1| predicted protein [Populus trichocarpa] gi|222833839|gb|EEE72316.1| predicted protein [Populus trichocarpa]

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/285 (76%), Positives = 241/285 (84%), Gaps = 6/285 (2%)

Query: 97  FSIDPAKKKRGRPRKYTPDGNIALRLATT----AQSPGSLADSGGGGGGAA-GSASEPSA 151
           FSI+PAKKKRGRPRKYTPDGNIAL L+ T      S G    SGG G G     ASE  +
Sbjct: 3   FSIEPAKKKRGRPRKYTPDGNIALGLSPTPIHSGMSAGQADSSGGAGSGVMPDVASEHPS 62

Query: 152 KRHRGRPPGSGKKQLDALGGVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSAS 211
           K+HRGRPPGSGKKQLDALGG GGVGFTPHVITVKAGEDI+SKI AFSQQGPRTVCILSA+
Sbjct: 63  KKHRGRPPGSGKKQLDALGGTGGVGFTPHVITVKAGEDIASKIMAFSQQGPRTVCILSAN 122

Query: 212 GAICNVTLRQPTMSGGTVTYEGRFEIISLSGSFLLSDNNGNRSRSGGLSVSLAGSDGRVL 271
           GAICNVTLRQP MSGG+VTYEGRFEIISLSGSFLLS++NG+RSR+GGLSVSLAGSDGRVL
Sbjct: 123 GAICNVTLRQPAMSGGSVTYEGRFEIISLSGSFLLSESNGSRSRTGGLSVSLAGSDGRVL 182

Query: 272 GGLVAGMLMAASPVQVIVGSFIAEGKKSNSNFLKSGPSSAPTPHMLSFGAPMTTSSPPSQ 331
           GG VAGML AAS VQVI+GSFIA+GKKSNS  LKSGPSS P P ML+FGAP+TT+SPPS+
Sbjct: 183 GGGVAGMLTAASAVQVILGSFIADGKKSNSKSLKSGPSSTPPPQMLNFGAPLTTASPPSR 242

Query: 332 GASSESSDDNGSSPLNRGAGLYNNAAQQPIHNMHMYQLWAGQTSQ 376
           G SSESSD+NG SP+NR  G+Y N + QPIHNM MYQLW GQ  +
Sbjct: 243 GGSSESSDENGGSPVNRTPGIYGNPS-QPIHNMQMYQLWGGQNPE 286

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126489|ref|XP_002329567.1| predicted protein [Populus trichocarpa] gi|222870276|gb|EEF07407.1| predicted protein [Populus trichocarpa]

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 247/380 (65%), Positives = 281/380 (73%), Gaps = 41/380 (10%)

Query: 6   PPPQLHQHQHQHQQPNIMMGPTSYHTNA---------MMPPNAAAGAAARFSFNPLSSSQ 56
           PPPQL        QP++++ PTS + +          + P NAA G    F FN +S ++
Sbjct: 22  PPPQLQS------QPSMILVPTSSYPSTTSHLINNPNISPQNAALGGG--FPFNTMSGNR 73

Query: 57  SQSQSQSESQSQLQPKQPLDSLPHGGVFDGSPSLRTGGGSFSIDPAKKKRGRPRKYTPDG 116
            QS+ +                   G FDGS    + G  FSI+PAKKKRGRPRKYTPDG
Sbjct: 74  LQSKPE-------------------GAFDGSSPTSSSGMRFSIEPAKKKRGRPRKYTPDG 114

Query: 117 NIALRLATTAQSPG---SLADSGGGGGGAAGSASEPSAKRHRGRPPGSGKKQLDALGGVG 173
           NIAL L+ T    G     ADSGGGG     +ASE  +K++RGRPPGSGKKQLDALGGVG
Sbjct: 115 NIALGLSPTPVPSGISAGHADSGGGGV-THDAASEHPSKKNRGRPPGSGKKQLDALGGVG 173

Query: 174 GVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYEG 233
           GVGFTPHVITVKAGEDI+SKI AFSQQGPRTVCILSA+GAICNVTLRQP MSGG+VTYEG
Sbjct: 174 GVGFTPHVITVKAGEDIASKIMAFSQQGPRTVCILSANGAICNVTLRQPAMSGGSVTYEG 233

Query: 234 RFEIISLSGSFLLSDNNGNRSRSGGLSVSLAGSDGRVLGGLVAGMLMAASPVQVIVGSFI 293
           RFEIISLSGSFLLS++NG+RSRSGGLSVSLAGSDGRVLGG VAGML AASPVQVIVGSFI
Sbjct: 234 RFEIISLSGSFLLSESNGSRSRSGGLSVSLAGSDGRVLGGGVAGMLTAASPVQVIVGSFI 293

Query: 294 AEGKKSNSNFLKSGPSSAPTPHMLSFGAPMTTSSPPSQGASSESSDDNGSSPLNRGAGLY 353
           A+GKKSNS+  KSGPSS P P ML+F AP+TT+SPPSQG SS+SSD+NG SP+NR  G+Y
Sbjct: 294 ADGKKSNSSASKSGPSSTPPPQMLNFSAPLTTASPPSQGGSSDSSDENGGSPVNRNPGIY 353

Query: 354 NNAAQQPIHNMHMYQLWAGQ 373
            N  Q  IHNM MYQLWA Q
Sbjct: 354 GNPNQS-IHNMQMYQLWADQ 372

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427270|ref|XP_002281340.1| PREDICTED: uncharacterized protein LOC100245362 [Vitis vinifera] gi|297742130|emb|CBI33917.3| unnamed protein product [Vitis vinifera]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 229/362 (63%), Positives = 263/362 (72%), Gaps = 42/362 (11%)

Query: 22  IMMGPTSYHTNA-----MMPPNAAAGAAA-RFSFNPLSSSQSQSQSQSESQSQLQPKQPL 75
           +MMGP SYHTN      MM PN+AA     RFSF  + +S+                 P+
Sbjct: 19  MMMGPNSYHTNMANTSPMMNPNSAAIMQNNRFSFTSMVASK-----------------PV 61

Query: 76  DSLPHGGVFDGSPS-LRTGGGSFSIDPAKKKRGRPRKYTPDGNIALRLATTAQSPGSLAD 134
           DS P+G   DGS + LR  G  F+I+PAKKKRGRPRKY PDGNIAL LA     P  +  
Sbjct: 62  DS-PYG---DGSSTGLRPCG--FNIEPAKKKRGRPRKYAPDGNIALGLA-----PTPIPS 110

Query: 135 SGGGGGGAAGSASEPSAKRHRGRPPGSGKKQLDALGGVGGVGFTPHVITVKAGEDISSKI 194
           +   G      +SEP AKR+RGRPPGSGKKQLDALG  G VGFTPHVITV  GEDI+SKI
Sbjct: 111 TAAHGDATGTPSSEPPAKRNRGRPPGSGKKQLDALGAAG-VGFTPHVITVNVGEDIASKI 169

Query: 195 FAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYEGRFEIISLSGSFLLSDNNGNRS 254
            AFSQQGPRTVCILSA+GAICNVTLRQP MSGGT++YEGRF+IISLSGSFLLS++NG+R 
Sbjct: 170 MAFSQQGPRTVCILSANGAICNVTLRQPAMSGGTISYEGRFDIISLSGSFLLSEDNGSRH 229

Query: 255 RSGGLSVSLAGSDGRVLGGLVAGMLMAASPVQVIVGSFIAEGKKSNSNFLKSGPSSAPTP 314
           R+GGLSVSLAGSDGRVLGG VAGML AA+PVQV+VGSFIA+GKK+N+N  +SG SSAP  
Sbjct: 230 RTGGLSVSLAGSDGRVLGGGVAGMLTAATPVQVVVGSFIADGKKTNTN--QSGSSSAPPA 287

Query: 315 HMLSFGAPMTTSSPPSQGASSESSDDNGSSPLNRGAGLYNNAAQQPIHNMHMYQL--WAG 372
            ML+FGAP+  +S PSQG SSESSD+NG SPLNRG   YNN + QPIH M MY    W  
Sbjct: 288 QMLNFGAPVVPAS-PSQGGSSESSDENGGSPLNRGPLPYNNVS-QPIHQMPMYAAMGWPN 345

Query: 373 QT 374
            T
Sbjct: 346 ST 347

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462009|ref|XP_004148734.1| PREDICTED: uncharacterized protein LOC101204243 [Cucumis sativus] gi|449511145|ref|XP_004163876.1| PREDICTED: uncharacterized LOC101204243 [Cucumis sativus]

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 222/390 (56%), Positives = 273/390 (70%), Gaps = 47/390 (12%)

Query: 1   MDPREPP-PQLHQHQHQHQQPNIMM---------GPTSYHTNAMMPPNAAAG----AAAR 46
           MD RE   P +HQH  Q   PN M+          P S +T+ ++ PN+AA     +A+R
Sbjct: 1   MDSRERSMPSVHQHHQQSTPPNRMIPNNASYSANMPNSNNTSPLINPNSAAAQMMSSASR 60

Query: 47  FSFNPLSSSQSQSQSQSESQSQLQPKQPLDSLPHGGVFDGSPS-LRTGGGSFSIDPAKKK 105
           F FN +  S S+    SES             P+   +DGS S LRTGG  F+ID  KKK
Sbjct: 61  FPFNSMMGSSSK---PSES-------------PNAASYDGSQSELRTGG--FNIDSGKKK 102

Query: 106 RGRPRKYTPDGNIALRLATTAQSPGSL-ADSGGGGGGAAGSASEPSAKRHRGRPPGSGKK 164
           RGRPRKY+PDGNIAL L+ T  +  ++ ADS G        + +P  K++RGRPPG+GK+
Sbjct: 103 RGRPRKYSPDGNIALGLSPTPITSSAVPADSAGM------HSPDPRPKKNRGRPPGTGKR 156

Query: 165 QLDALGGVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTM 224
           Q+DALG  GGVGFTPHVI VK GEDI+SK+ AFSQQGPRTVCILSA GA+CNVTL QP +
Sbjct: 157 QMDALG-TGGVGFTPHVILVKPGEDIASKVMAFSQQGPRTVCILSAHGAVCNVTL-QPAL 214

Query: 225 SGGTVTYEGRFEIISLSGSFLLSDNNGNRSRSGGLSVSLAGSDGRVLGGLVAGMLMAASP 284
           S G+V+YEGR+EIISLSGSFL+S+NNGNRSRSGGLSVSLA +DG+VLGG +  ML AAS 
Sbjct: 215 SSGSVSYEGRYEIISLSGSFLISENNGNRSRSGGLSVSLASADGQVLGG-ITNMLTAAST 273

Query: 285 VQVIVGSFIAEGKKSNSNFLKSGPSSAPTPHMLSFGAPMTTSSPPSQGASSESSDDNGSS 344
           VQVIVGSF+ +GKK  ++  KSGPSS  +P+ML+FG P+     PS+GAS+ SSDDNG S
Sbjct: 274 VQVIVGSFLVDGKKLGASIQKSGPSST-SPNMLNFGTPVAAGC-PSEGASNNSSDDNGGS 331

Query: 345 PLNRGAGLYNNAAQQPIHNMHMY-QLWAGQ 373
           PL+RG G+Y N A QPIHNM MY QLWA +
Sbjct: 332 PLSRGPGMYTN-ANQPIHNMQMYQQLWASR 360

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512006|ref|XP_003524712.1| PREDICTED: putative DNA-binding protein ESCAROLA-like [Glycine max]

 Score =  338 bits (867), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 198/284 (69%), Positives = 225/284 (79%), Gaps = 11/284 (3%)

Query: 102 AKKKRGRPRKYTPDGNIALRLATTAQSPGSLADSGGGGGGAAGSAS-EPSAKRHRGRPPG 160
           AKKKRGRPRKY+PDGNIALRLA T  SP + A  GGGGG +AG AS +  AK+HRGRPPG
Sbjct: 7   AKKKRGRPRKYSPDGNIALRLAPTHASPPAAASGGGGGGDSAGMASADAPAKKHRGRPPG 66

Query: 161 SGKKQLDALGGVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLR 220
           SGKKQLDAL G GGVGFTPHVI V++GEDI++KI AFSQQGPRTVCILSA GAI NVTL+
Sbjct: 67  SGKKQLDAL-GAGGVGFTPHVILVESGEDITAKIMAFSQQGPRTVCILSAIGAIGNVTLQ 125

Query: 221 QPTMSGGTVTYEGRFEIISLSGSFLLSDNNGNRSRSGGLSVSLAGSDGRVLGGLVAGMLM 280
           Q  M+GG  TYEGRFEIISLSGS   S+NN  RSR+  L+V+LAGSDGRVLGG VAG L+
Sbjct: 126 QSAMTGGIATYEGRFEIISLSGSLQQSENNSERSRTCTLNVTLAGSDGRVLGGGVAGTLI 185

Query: 281 AASPVQVIVGSFIAEGKKSNSNFLKSGPSSAPTPHMLSFGAPMTTSSPPSQGASSESSDD 340
           AAS VQVIVGSFIA+ KKS+SN LKSG SSAP P ML+FG+ MT +SP SQG S+ESS++
Sbjct: 186 AASTVQVIVGSFIADAKKSSSNALKSGSSSAPPPQMLTFGSSMTPNSPTSQGPSTESSEE 245

Query: 341 NGSSPLNR------GAGLYNNAAQQPIHNMHMYQ--LWAGQTSQ 376
              SP  R      G GLYNNA+ QP+HNM MY   LWAGQ+ Q
Sbjct: 246 QDHSPFCRGPGPGSGHGLYNNAS-QPVHNMPMYHHPLWAGQSHQ 288

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497039|ref|XP_003517372.1| PREDICTED: uncharacterized protein LOC100788026 [Glycine max]

 Score =  292 bits (747), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 193/381 (50%), Positives = 241/381 (63%), Gaps = 48/381 (12%)

Query: 1   MDPREPPPQLHQHQHQHQQPNIMMGPTSYHTNAMMPPNAAAGAAARFSFNPLSSSQSQSQ 60
           MD RE P        Q Q PN+M+GPT Y       P+  A A ARF ++  +++ S   
Sbjct: 1   MDSREQP--------QPQPPNMMVGPTVY-------PSMLAPATARFPYSNNNNNNSNPP 45

Query: 61  SQSESQSQLQPKQPLDSLPHGGVFDGSPSLRTGGGSFSIDPAKKKRGRPRKYTPDGNIAL 120
             S            ++  +   F+   +L+    + S + +KKKRGRPRKY+PDGNIAL
Sbjct: 46  PPSSEPLNSD----ANTNHNNSTFE---ALKPCALAAS-ESSKKKRGRPRKYSPDGNIAL 97

Query: 121 RLATTAQSPGSLADSGGGGGGAAGSASEPSAKRHRGRPPGSGKKQLDALGGVGGVGFTPH 180
            L  T  +P S AD              P AK+HRGRPPGSGKKQ+DALG + G GFTPH
Sbjct: 98  GLGPT-HAPASSAD--------------PPAKKHRGRPPGSGKKQMDALG-IPGTGFTPH 141

Query: 181 VITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYEGRFEIISL 240
           VIT + GEDI+SK+ AF +QG RTVC LSASGAI NVT+R P M  G + YEG+FEIISL
Sbjct: 142 VITAEVGEDIASKLVAFCEQGRRTVCTLSASGAIRNVTIRAPDMPAGILAYEGQFEIISL 201

Query: 241 SGSFLLSDNNGNRSRSGGLSVSLAGSDGRVLGGLVAGMLMAASPVQVIVGSFIAEGKKSN 300
             + L SDNN    R   LSVS+AG DGR+LGG V G L AA+ VQVI+GSFIA+GKKS+
Sbjct: 202 KAATLQSDNN----RMAALSVSIAGPDGRLLGGEVVGALTAATAVQVILGSFIADGKKSS 257

Query: 301 SNFLKSGPSSAPTPHMLSFGAPMTTSSPPSQGASSESSDDNGSSPLNR---GAGLYNNAA 357
           S+ LKSG SS P+  ML+FGA  T ++P S G S++SS+DN +S  ++   G+GLYNN A
Sbjct: 258 SSNLKSGRSSTPSSQMLAFGASPTPTTPTSLGPSTDSSEDNENSHFSKGPGGSGLYNNNA 317

Query: 358 QQPIHNMHMY--QLWAGQTSQ 376
            QPIH M MY  QLWAG T Q
Sbjct: 318 SQPIHTMPMYQHQLWAGHTQQ 338

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461555|ref|XP_004148507.1| PREDICTED: uncharacterized protein LOC101205370 [Cucumis sativus] gi|449522829|ref|XP_004168428.1| PREDICTED: uncharacterized LOC101205370 [Cucumis sativus]

 Score =  289 bits (740), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 180/312 (57%), Positives = 223/312 (71%), Gaps = 22/312 (7%)

Query: 74  PLDSLPHGGVFDGSPSLRTGGGSFSIDPAKKKRGRPRKYTPDGN-IALRLATTAQSPGSL 132
           PLDSL +   +DGS S      +F++D  KK+RGRPRKY PD N IAL LA T     ++
Sbjct: 65  PLDSL-NVSPYDGSHS-----ANFNVDSGKKRRGRPRKYAPDANNIALGLAPTP----TV 114

Query: 133 ADSGGGGGGAAGSASEPSAKRHRGRPPGSGKKQLDALGGVGGVGFTPHVITVKAGEDISS 192
           A S   G   A   SE  A++ RGRPPGSGKKQ +++G  GG GFTPHV+  K GED+++
Sbjct: 115 ASSLPHGDLTATPDSEQPARKTRGRPPGSGKKQSNSIGS-GGTGFTPHVLLAKPGEDVAA 173

Query: 193 KIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYEGRFEIISLSGSFLLSDNNGN 252
           KI +FSQQGPRTV ILSA+G + N TLR    SGG+V+YEG ++IISLSGSFLLS+NNG 
Sbjct: 174 KILSFSQQGPRTVFILSANGTLSNATLRHSASSGGSVSYEGHYDIISLSGSFLLSENNGT 233

Query: 253 RSRSGGLSVSLAGSDGRVLGGLVAGMLMAASPVQVIVGSFIAEGKKSNSNFLKSGPSSAP 312
           RSR+GGLSV LAGS+G+VLGG VAGMLMA+S VQVIVGSF+ + KKSN++ L SG SSAP
Sbjct: 234 RSRTGGLSVLLAGSNGQVLGGGVAGMLMASSQVQVIVGSFLEDDKKSNTSMLNSGSSSAP 293

Query: 313 TPHMLSF-------GAPMTTSSPPSQGASSESSDDNGSSPL-NRGAGLYNNAAQQPIHNM 364
           +  M++F        A    S P   G+S ESS +NG SPL NR  G++NN++ QPIHN+
Sbjct: 294 S-QMINFGGGGGGGLAAAAASPPSLGGSSGESSGENGDSPLNNRHPGMFNNSS-QPIHNL 351

Query: 365 HMYQLWAGQTSQ 376
            MYQLWAGQT Q
Sbjct: 352 QMYQLWAGQTQQ 363

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540605|ref|XP_003538778.1| PREDICTED: uncharacterized protein LOC100789687 [Glycine max]

 Score =  288 bits (736), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 168/280 (60%), Positives = 200/280 (71%), Gaps = 25/280 (8%)

Query: 102 AKKKRGRPRKYTPDGNIALRLATTAQSPGSLADSGGGGGGAAGSASEPSAKRHRGRPPGS 161
           +KKKRGRPRKY+PDGNIAL L  T  +P S AD              P AK+HRGRPPGS
Sbjct: 80  SKKKRGRPRKYSPDGNIALGLGPT-HAPASSAD--------------PPAKKHRGRPPGS 124

Query: 162 GKKQLDALGGVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQ 221
           GKKQ+DALG + G GFTPHVIT + GEDI++K+ AF +QGPRTVC LSA+GA  NVT+R 
Sbjct: 125 GKKQMDALG-IPGTGFTPHVITAEVGEDIAAKLVAFCEQGPRTVCTLSANGATRNVTIRA 183

Query: 222 PTMSGGTVTYEGRFEIISLSGSFLLSDNNGNRSRSGGLSVSLAGSDGRVLGGLVAGMLMA 281
           P M  GTV YEG FEIISL  + L SDNN    R   LSVSLAG DGRVLGG V G L A
Sbjct: 184 PDMPAGTVAYEGPFEIISLKAATLQSDNN----RMAALSVSLAGPDGRVLGGEVVGALTA 239

Query: 282 ASPVQVIVGSFIAEGKKSNSNFLKSGPSSAPTPHMLSFGAPMTTSSPPSQGASSESSDDN 341
           A+ VQ+++GSFIA+GKKS+S++LKSG S  P+  ML+FGA  T ++P SQG S+ESS+DN
Sbjct: 240 ATAVQIVLGSFIADGKKSSSSYLKSGRSLTPSSQMLAFGASRTPTTPTSQGPSTESSEDN 299

Query: 342 GSSPLNR---GAGLYNNAAQQPIHNMHMY--QLWAGQTSQ 376
            +S  ++   G GLY+N A QPIH M MY  QLWAG T Q
Sbjct: 300 ENSHFSQGPGGPGLYDNNASQPIHTMPMYQHQLWAGHTQQ 339

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476667|ref|XP_003608619.1| AT-hook protein [Medicago truncatula] gi|355509674|gb|AES90816.1| AT-hook protein [Medicago truncatula]

 Score =  287 bits (735), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 199/394 (50%), Positives = 234/394 (59%), Gaps = 82/394 (20%)

Query: 1   MDPREPPPQLHQHQHQHQQPNIMMGPTSY--HTNAMMPPNAA--------AGAAARFSFN 50
           MD R  PPQ         QP +M+GPTSY      M+ PN++        A A ARF   
Sbjct: 1   MDSRSAPPQ---------QPTMMVGPTSYAPTNTTMISPNSSTTTTANIMAPATARF--- 48

Query: 51  PLSSSQSQSQSQSESQSQLQPKQPLDSLPHGGVFDGSPSLRTGGGSFSIDPAKKKRGRPR 110
           P +S QS+                    P     DG  S  T G        KKKRGRPR
Sbjct: 49  PFASPQSE--------------------PFSVTHDGPSSPSTLG--------KKKRGRPR 80

Query: 111 KYTPDGNIALRLATTAQSPGSLADSGGGGGGAAGSASEPSAKRHRGRPPGSGKKQLDALG 170
           KY+PDGNIAL   +   S                           GRPPGSGKKQLDALG
Sbjct: 81  KYSPDGNIALGFGSCFFSCCCYVCC-------------------FGRPPGSGKKQLDALG 121

Query: 171 GVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVT 230
             GG GFTPHVI V++GEDI+ K+ AFSQ GPRTVCILSA GAI +V LRQP  SG    
Sbjct: 122 A-GGTGFTPHVILVESGEDITEKVMAFSQTGPRTVCILSAIGAISSVILRQPA-SGSIAR 179

Query: 231 YE-----GRFEIISLSGSFLLSDNNGNRSRSGGLSVSLAGSDGRVLGGLVAGMLMAASPV 285
           YE     G+FEI+SLSG   LS+NNG +SR+  L VS+AG+DGRVLGG VAG L AAS V
Sbjct: 180 YEVQLVNGQFEIVSLSGPMPLSENNGEQSRTSSLYVSVAGADGRVLGGAVAGELTAASTV 239

Query: 286 QVIVGSFIAEGKKSNSNFLKSGPSSAPTPHMLSFGAPMTTSSPPSQGASSESSDDNG-SS 344
           QVIVGSFI + KKS+S+ +KSGPSSAPT  ML+FGAP T +SP SQG S+ESS++N  +S
Sbjct: 240 QVIVGSFIVDRKKSSSSMVKSGPSSAPTSQMLNFGAPTTPTSPTSQGPSTESSEENDHNS 299

Query: 345 PLNRGAGLYNNAAQQPIHN----MHMYQLWAGQT 374
             +RG GLYNN A QP+HN    M+ + LWAGQT
Sbjct: 300 NFSRGPGLYNN-ANQPVHNNMQQMYHHPLWAGQT 332

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	376
TAIR|locus:2178505	386	AT5G46640 [Arabidopsis thalian	0.760	0.740	0.496	1e-61
TAIR|locus:2141045	439	AT4G17950 [Arabidopsis thalian	0.699	0.599	0.481	1.5e-58
TAIR|locus:2051038	351	AT2G33620 [Arabidopsis thalian	0.678	0.726	0.487	1.1e-55
TAIR|locus:2126946	318	AT4G00200 [Arabidopsis thalian	0.390	0.462	0.626	1.1e-48
TAIR|locus:2118091	356	AHL1 "AT-hook motif nuclear-lo	0.547	0.578	0.491	3.7e-48
TAIR|locus:2153142	419	AHL4 "AT-HOOK MOTIF NUCLEAR LO	0.327	0.293	0.666	5.3e-47
TAIR|locus:2167988	404	AT5G62260 [Arabidopsis thalian	0.497	0.462	0.440	1.1e-46
TAIR|locus:2050766	348	AT2G45850 [Arabidopsis thalian	0.494	0.534	0.509	2.3e-46
TAIR|locus:2122684	404	AHL3 "AT-HOOK MOTIF NUCLEAR LO	0.553	0.514	0.476	1.5e-44
TAIR|locus:2132599	334	AT4G22770 [Arabidopsis thalian	0.617	0.694	0.433	8.1e-44

TAIR|locus:2178505 AT5G46640 [Arabidopsis thaliana (taxid:3702)]

 Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
 Identities = 154/310 (49%), Positives = 183/310 (59%)

Query:    82 GVFDGSPSLRTGGGSFSIDP------AKKKRGRPRKYTPDGNIALRLATTAQXXXXXXXX 135
             G  DGSPS +     F ID        KKKRGRPRKYTPDG+IAL LA T+         
Sbjct:    77 GFGDGSPSSQPM--RFGIDDQNQQLQVKKKRGRPRKYTPDGSIALGLAPTSPLLSAASNS 134

Query:   136 XXXXXXXXXXXXXXXX----KRHRGRPPGSGKKQLDALGGVGGVGFTPHVITVKAGEDIS 191
                                 KR+RGRPPGS KKQLDALGG  GVGFTPHVI V  GEDI+
Sbjct:   135 YGEGGVGDSGGNGNSVDPPVKRNRGRPPGSSKKQLDALGGTSGVGFTPHVIEVNTGEDIA 194

Query:   192 SKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYEGRFEIISLSGSFLLSDNNG 251
             SK+ AFS QG RT+CILSASGA+  V LRQ + S G VTYEGRFEII+LSGS L  + NG
Sbjct:   195 SKVMAFSDQGSRTICILSASGAVSRVMLRQASHSSGIVTYEGRFEIITLSGSVLNYEVNG 254

Query:   252 NRSRSGGLSVSLAGSDGRVLGGLVAGMLMAASPVQVIVGSFIAEGKK---SNSNFLKSG- 307
             + +RSG LSV+LAG DG ++GG V G L+AA+ VQVIVGSF+AE KK   S+ N  +   
Sbjct:   255 STNRSGNLSVALAGPDGGIVGGSVVGNLVAATQVQVIVGSFVAEAKKPKQSSVNIARGQN 314

Query:   308 --PSSAPTPHMLSFGAPMTTXXXXXXXXXXXXXXXXXXXPLNRGA-GLYNNAAQQPIH-- 362
               P+SAP  +ML+FG+ ++                      N G  G      QQP+H  
Sbjct:   315 PEPASAPA-NMLNFGS-VSQGPSSESSEENESGSPAMHRDNNNGIYGAQQQQQQQPLHPH 372

Query:   363 NMHMYQ-LWA 371
              M MYQ LW+
Sbjct:   373 QMQMYQHLWS 382

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2141045 AT4G17950 [Arabidopsis thaliana (taxid:3702)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 143/297 (48%), Positives = 176/297 (59%)

Query:   103 KKKRGRPRKYTPDG--------NIALRLATTAQXXXXXXXXXXX--------XXXXXXXX 146
             KKKRGRPRKY  DG        NIAL LA T+                            
Sbjct:   131 KKKRGRPRKYAADGGGGGGGGSNIALGLAPTSPLPSASNSYGGGNEGGGGGDSAGANANS 190

Query:   147 XXXXXKRHRGRPPGSGKKQLDALGGVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVC 206
                  KR+RGRPPGSGKKQLDALGG GGVGFTPHVI VK GEDI++KI AF+ QGPR +C
Sbjct:   191 SDPPAKRNRGRPPGSGKKQLDALGGTGGVGFTPHVIEVKTGEDIATKILAFTNQGPRAIC 250

Query:   207 ILSASGAICNVTLRQPTMSG--GTVTYEGRFEIISLSGSFLLSDNNGNRSRSGGLSVSLA 264
             ILSA+GA+ NV LRQ   S   GTV YEGRFEIISLSGSFL S++NG  +++G LSVSLA
Sbjct:   251 ILSATGAVTNVMLRQANNSNPTGTVKYEGRFEIISLSGSFLNSESNGTVTKTGNLSVSLA 310

Query:   265 GSDGRVLGGLVAGMLMAASPVQVIVGSFIAEGKKSNSNFLKSG----PSSAPTPHMLSFG 320
             G +GR++GG V GML+A S VQVIVGSF+ +G+K   +  ++     P+SAP  +MLSFG
Sbjct:   311 GHEGRIVGGCVDGMLVAGSQVQVIVGSFVPDGRKQKQSAGRAQNTPEPASAPA-NMLSFG 369

Query:   321 A---PMTTXXXXXXXXXXXXXXXXXXXPLNRGA--------GLYNNAAQQPIHNMHM 366
                 P +                    PL+R +        G++ N+  QP+H + M
Sbjct:   370 GVGGPGSPRSQGQQHSSESSEENESNSPLHRRSNNNNSNNHGIFGNSTPQPLHQIPM 426

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2051038 AT2G33620 [Arabidopsis thaliana (taxid:3702)]

 Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
 Identities = 134/275 (48%), Positives = 164/275 (59%)

Query:    92 TGGGSFSIDPAKKKRGRPRKYTPD-GNIALRLATTAQXXXXXXXXXXXXXXXXXXXXXXX 150
             TG GS   +P KK+RGRPRKY PD G ++L L   A                        
Sbjct:    89 TGTGS---EPVKKRRGRPRKYGPDSGEMSLGLNPGAPSFTVSQPSSGGDGG--------- 136

Query:   151 XKRHRGRPPGSGKKQL--DALGGVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCIL 208
              ++ RGRPPGS  K+L   ALG  G +GFTPHV+TV AGED+SSKI A +  GPR VC+L
Sbjct:   137 -EKKRGRPPGSSSKRLKLQALGSTG-IGFTPHVLTVLAGEDVSSKIMALTHNGPRAVCVL 194

Query:   209 SASGAICNVTLRQPTMSGGTVTYEGRFEIISLSGSFLLSDNNGNRSRSGGLSVSLAGSDG 268
             SA+GAI NVTLRQ   SGGTVTYEGRFEI+SLSGSF L +NNG RSR+GGLSVSL+  DG
Sbjct:   195 SANGAISNVTLRQSATSGGTVTYEGRFEILSLSGSFHLLENNGQRSRTGGLSVSLSSPDG 254

Query:   269 RVLGGLVAGMLMAASPVQVIVGSFIAEGKKSNSNFL-KSGPSSAPTPHMLSFGAPMTTXX 327
              VLGG VAG+L+AASPVQ++VGSF+ +G+K     + + G SS   P +      MT   
Sbjct:   255 NVLGGSVAGLLIAASPVQIVVGSFLPDGEKEPKQHVGQMGLSSPVLPRVAPTQVLMTPSS 314

Query:   328 XXXXXXXXXXX-XXXXXXPLNRGAG-LYNNAAQQP 360
                               P+++  G  YNN    P
Sbjct:   315 PQSRGTMSESSCGGGHGSPIHQSTGGPYNNTINMP 349

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

TAIR|locus:2126946 AT4G00200 [Arabidopsis thaliana (taxid:3702)]

 Score = 468 (169.8 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
 Identities = 94/150 (62%), Positives = 116/150 (77%)

Query:   170 GGVGG-VG--FTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSG 226
             GGVGG VG  FTPHVITV  GEDI+ +I +FSQQGPR +CILSA+G I NVTLRQP   G
Sbjct:   113 GGVGGGVGSNFTPHVITVNTGEDITMRIISFSQQGPRAICILSANGVISNVTLRQPDSCG 172

Query:   227 GTVTYEGRFEIISLSGSFLLSDNNGNRSRSGGLSVSLAGSDGRVLGGLVAGMLMAASPVQ 286
             GT+TYEGRFEI+SLSGSF+ ++N G++ RSGG+SVSLAG DGRV+GG VAG+L+AA+P+Q
Sbjct:   173 GTLTYEGRFEILSLSGSFMETENQGSKGRSGGMSVSLAGPDGRVVGGGVAGLLIAATPIQ 232

Query:   287 VIVGSFIAEGKKSNSNFLKSGPSSAPTPHM 316
             V+VGSFI   ++ +    K     AP   M
Sbjct:   233 VVVGSFITSDQQDHQKPRKQRVEHAPAAVM 262

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2118091 AHL1 "AT-hook motif nuclear-localized protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 111/226 (49%), Positives = 146/226 (64%)

Query:   103 KKKRGRPRKYTPDGNIALRLATTAQXXXXXXXXXXXXXXXXXXXXXXXXKRHRGRPPGSG 162
             KKKRGRPRKY PDG +     +                           KR + +P  S 
Sbjct:    89 KKKRGRPRKYGPDGTVVA--LSPKPISSAPAPSHLPPPSSHVIDFSASEKRSKVKPTNSF 146

Query:   163 KK-----QLDALG-----GVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASG 212
              +     Q++ LG      VGG  FTPH+ITV  GED++ KI +FSQQGPR++C+LSA+G
Sbjct:   147 NRTKYHHQVENLGEWAPCSVGG-NFTPHIITVNTGEDVTMKIISFSQQGPRSICVLSANG 205

Query:   213 AICNVTLRQPTMSGGTVTYEGRFEIISLSGSFLLSDNNGNRSRSGGLSVSLAGSDGRVLG 272
              I +VTLRQP  SGGT+TYEGRFEI+SLSGSF+ +D+ G RSR+GG+SVSLA  DGRV+G
Sbjct:   206 VISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPNDSGGTRSRTGGMSVSLASPDGRVVG 265

Query:   273 GLVAGMLMAASPVQVIVGSFIA-------EGKKSNSNFLKSGPSSA 311
             G +AG+L+AASPVQV+VGSF+A       + KK+  +F+ S P++A
Sbjct:   266 GGLAGLLVAASPVQVVVGSFLAGTDHQDQKPKKNKHDFMLSSPTAA 311

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2153142 AHL4 "AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 423 (154.0 bits), Expect = 5.3e-47, Sum P(2) = 5.3e-47
 Identities = 82/123 (66%), Positives = 101/123 (82%)

Query:   177 FTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYEGRFE 236
             FTPHV+TV AGED++ KI  FSQQG R +CILSA+G I NVTLRQ   SGGT+TYEG FE
Sbjct:   178 FTPHVLTVNAGEDVTMKIMTFSQQGSRAICILSANGPISNVTLRQSMTSGGTLTYEGHFE 237

Query:   237 IISLSGSFLLSDNNGNRSRSGGLSVSLAGSDGRVLGGLVAGMLMAASPVQVIVGSFIAEG 296
             I+SL+GSF+ S++ G RSR+GG+SVSLAG DGRV GG +AG+ +AA PVQV+VGSFIA  
Sbjct:   238 ILSLTGSFIPSESGGTRSRAGGMSVSLAGQDGRVFGGGLAGLFIAAGPVQVMVGSFIAGQ 297

Query:   297 KKS 299
             ++S
Sbjct:   298 EES 300

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008283 "cell proliferation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2167988 AT5G62260 [Arabidopsis thaliana (taxid:3702)]

 Score = 413 (150.4 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
 Identities = 85/193 (44%), Positives = 114/193 (59%)

Query:   174 GVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYEG 233
             G  FT H  TV  GED++ K+  +SQQG R +CILSA+G+I NVTL QPT +GGT+TYEG
Sbjct:   157 GANFTTHQFTVNGGEDVTMKVMPYSQQGSRAICILSATGSISNVTLGQPTNAGGTLTYEG 216

Query:   234 RFEIISLSGSFLLSDNNGNRSRSGGLSVSLAGSDGRVLGGLVAGMLMAASPVQVIVGSFI 293
             RFEI+SLSGSF+ ++N G + R+GG+S+SLAG +G + GG +AGML+AA PVQV++GSFI
Sbjct:   217 RFEILSLSGSFMPTENGGTKGRAGGMSISLAGPNGNIFGGGLAGMLIAAGPVQVVMGSFI 276

Query:   294 A-----EGKKSNSNFLKS-GPSSAPTPHMLSFGAPMTTXXXXXXXXXXXXXXXXXXXPLN 347
                   + +K     +++  P     P  L    P T                    P  
Sbjct:   277 VMHQAEQNQKKKPRVMEAFAPPQPQAPPQLQQQQPPTFTITTVNSTSPSVNTVEEQKPQA 336

Query:   348 RGAGLYNNAAQQP 360
              G G+    AQ P
Sbjct:   337 YGGGIVRPMAQMP 349

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2050766 AT2G45850 [Arabidopsis thaliana (taxid:3702)]

 Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
 Identities = 105/206 (50%), Positives = 137/206 (66%)

Query:   101 PAKKKRGRPRKYTPDGNIALRLATTAQXXXXXXXXXXXXXXXXXXXXXXXXKRHRGRPPG 160
             P K+KRGRPRKY  DG+++L L++++                         KR RGRPPG
Sbjct:    96 PMKRKRGRPRKYGQDGSVSLALSSSS---------------VSTITPNNSNKRGRGRPPG 140

Query:   161 SGKKQ-LDALGGV----GGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAIC 215
             SGKKQ + ++G +     G+ FTPHVI V  GEDI+SK+ AFSQQGPR +C+LSASGA+ 
Sbjct:   141 SGKKQRMASVGELMPSSSGMSFTPHVIAVSIGEDIASKVIAFSQQGPRAICVLSASGAVS 200

Query:   216 NVTLRQPTMSGGTVTYEGRFEIISLSGSFLLSDNNGNRSRSGGLSVSLAGSDGRVLGGLV 275
               TL QP+ S G + YEGRFEI++LS S++++ +   R+R+G LSVSLA  DGRV+GG +
Sbjct:   201 TATLIQPSASPGAIKYEGRFEILALSTSYIVATDGSFRNRTGNLSVSLASPDGRVIGGAI 260

Query:   276 AGMLMAASPVQVIVGSFIAEGKKSNS 301
              G L+AASPVQVIVGSFI    K  S
Sbjct:   261 GGPLIAASPVQVIVGSFIWAAPKIKS 286

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

TAIR|locus:2122684 AHL3 "AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 102/214 (47%), Positives = 130/214 (60%)

Query:    98 SIDPAKKKRGRPRKYTPDGNIALRLATTAQXXXXXXXXXXXXXXXXXXXXXXXXKRHRGR 157
             S +  KKKRGRPRKY PDG + + L+                               + +
Sbjct:    81 SAEQLKKKRGRPRKYNPDGTLVVTLSPMPISSSVPLTSEFPPRKRGRGRGKSNRWLKKSQ 140

Query:   158 PPGSGKKQLDA-LGGVG-----GVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSAS 211
                  +  +D  L GVG     G  FTPHV+ V AGED++ KI  FSQQG R +CILSA+
Sbjct:   141 MFQFDRSPVDTNLAGVGTADFVGANFTPHVLIVNAGEDVTMKIMTFSQQGSRAICILSAN 200

Query:   212 GAICNVTLRQPTMSGGTVTYEGRFEIISLSGSFLLSDNNGNRSRSGGLSVSLAGSDGRVL 271
             G I NVTLRQ   SGGT+TYEGRFEI+SL+GSF+ +D+ G RSR+GG+SV LAG DGRV 
Sbjct:   201 GPISNVTLRQSMTSGGTLTYEGRFEILSLTGSFMQNDSGGTRSRAGGMSVCLAGPDGRVF 260

Query:   272 GGLVAGMLMAASPVQVIVGSFIAEGKKSNSNFLK 305
             GG +AG+ +AA PVQV+VG+FIA  ++S     K
Sbjct:   261 GGGLAGLFLAAGPVQVMVGTFIAGQEQSQLELAK 294

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2132599 AT4G22770 [Arabidopsis thaliana (taxid:3702)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 111/256 (43%), Positives = 147/256 (57%)

Query:    87 SPSLRTGGGSFSIDPAKKKRGRPRKYTPDGNIALRLATTAQXXXXXXXXXXXXXXXXXXX 146
             +PS    G  FS  P KK+RGRPRKY  DG       T +                    
Sbjct:    58 TPSAAMDG--FSSGPIKKRRGRPRKYGHDG----AAVTLSPNPISSAAPTTSHVIDFSTT 111

Query:   147 XXXXXKRHRGRP-PGS---GKKQLDALG----GVGGVGFTPHVITVKAGEDISSKIFAFS 198
                  K     P P S    K Q++ LG          FTPH+ITV AGED++ +I +FS
Sbjct:   112 SEKRGKMKPATPTPSSFIRPKYQVENLGEWSPSSAAANFTPHIITVNAGEDVTKRIISFS 171

Query:   199 QQGPRTVCILSASGAICNVTLRQPTMSGGTVTYEGRFEIISLSGSFLLSDNNGNRSRSGG 258
             QQG   +C+L A+G + +VTLRQP  SGGT+TYEGRFEI+SLSG+F+ SD++G RSR+GG
Sbjct:   172 QQGSLAICVLCANGVVSSVTLRQPDSSGGTLTYEGRFEILSLSGTFMPSDSDGTRSRTGG 231

Query:   259 LSVSLAGSDGRVLGGLVAGMLMAASPVQVIVGSFIA-------EGKKSNSNFLKSG--PS 309
             +SVSLA  DGRV+GG VAG+L+AA+P+QV+VG+F+          K  N NF+ S   P+
Sbjct:   232 MSVSLASPDGRVVGGGVAGLLVAATPIQVVVGTFLGGTNQQEQTPKPHNHNFMSSPLMPT 291

Query:   310 SAPTPHMLSFGAPMTT 325
             S+      +   PMT+
Sbjct:   292 SSNVADHRTI-RPMTS 306

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	376
pfam03479	120	pfam03479, DUF296, Domain of unknown function (DUF	9e-38
cd11378	113	cd11378, DUF296, Domain of unknown function found	4e-33
COG1661	141	COG1661, COG1661, Predicted DNA-binding protein wi	3e-08

>gnl|CDD|217587 pfam03479, DUF296, Domain of unknown function (DUF296)

 Score =  131 bits (333), Expect = 9e-38
 Identities = 53/123 (43%), Positives = 67/123 (54%), Gaps = 9/123 (7%)

Query: 177 FTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQP---TMSGGTVTYEG 233
             PHV+ ++ GED+   + AF++Q      +LS  GA+ NVTLRQP     S G VT EG
Sbjct: 1   GRPHVLRLEPGEDLVESLEAFARQRGIGAAVLSGIGAVSNVTLRQPDEEAKSYGVVTLEG 60

Query: 234 RFEIISLSGSFLLSDNNGNRSRSGGLSVSLAGSDGRVLGG-LVAGMLMAASPVQVIVGSF 292
           RFEI+SLSG+            SG L VSLA  DG+V+GG L  G + A   V V   SF
Sbjct: 61  RFEILSLSGTISP-----GGKPSGHLHVSLADPDGQVVGGHLAEGTVFATGEVVVTELSF 115

Query: 293 IAE 295
              
Sbjct: 116 ENA 118

This putative domain is found in proteins that contain AT-hook motifs pfam02178, which strongly suggests a DNA-binding function for the proteins as a whole. There are three highly conserved histidine residues, eg at 117, 119 and 133 in Reut_B5223, which should be a structurally conserved metal-binding unit, based on structural comparison with known metal-binding structures. The proteins should work as trimers. Length = 120

>gnl|CDD|211390 cd11378, DUF296, Domain of unknown function found in archaea, bacteria, and plants

 Score =  119 bits (300), Expect = 4e-33
 Identities = 49/118 (41%), Positives = 67/118 (56%), Gaps = 8/118 (6%)

Query: 178 TPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQP---TMSGGTVTYEGR 234
            P V+ ++ GED+   + AF+++      +LS  GA+ N TLR P        TVT+EGR
Sbjct: 1   RPFVLRLEPGEDLVESLEAFAREEGIKAAVLSGIGAVSNATLRYPDPEPKEYETVTFEGR 60

Query: 235 FEIISLSGSFLLSDNNGNRSRSGGLSVSLAGSDGRVLGGLVAGMLMAASPVQVIVGSF 292
            EI+SLSG+    D       SG L VSLA SDGRV+GG + G L  A  V+V++G  
Sbjct: 61  LEILSLSGNISPDDGK----PSGHLHVSLADSDGRVIGGHLLGAL-VAGTVEVVIGEL 113

This domain is found in proteins that contain AT-hook motifs, which suggests a role in DNA-binding for the proteins as a whole. Three conserved histidine residues appear to form a zinc-binding site, and the domain has been observed to form homotrimers. It co-occurs with a thioredoxin-like domain in uncharacterized cyanobacterial proteins. Length = 113

>gnl|CDD|224575 COG1661, COG1661, Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 12/115 (10%)

Query: 180 HVITVK--AGEDISSKIFAFSQQGPRTVCILSASGAICNVTLR---QPTMSGGTVTYEGR 234
            VI ++   GED+ S++ AF++Q      +++A GA+ +  LR          T+     
Sbjct: 10  RVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEP 69

Query: 235 FEIISLSGSFLLSDNNGNRSRSGGLSVSLAGSDGRVLGG-LVAGMLMAASPVQVI 288
            E++SL G+  L D   +      L  +L   +G  LGG L+ G +   + V + 
Sbjct: 70  LEVLSLLGNIALDDPFVH------LHAALGDENGITLGGHLLEGEVFPTAEVFIR 118

Length = 141

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	376
PF03479	120	DUF296: Domain of unknown function (DUF296); Inter	99.95
COG1661	141	Predicted DNA-binding protein with PD1-like DNA-bi	99.91
PF02178	13	AT_hook: AT hook motif; InterPro: IPR017956 AT hoo	96.14
smart00384	26	AT_hook DNA binding domain with preference for A/T	96.09
PF14621	219	RFX5_DNA_bdg: RFX5 DNA-binding domain	83.75

>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown

Probab=99.95  E-value=5.3e-28  Score=205.75  Aligned_cols=116  Identities=29%  Similarity=0.377  Sum_probs=101.4

Q ss_pred             ceeEEEEecCCCcHHHHHHHHHHhCCceEEEEeeeceeeeEEEeCCCC--CCCeeEeecceEEEEeeeeeecCCCCCCCC
Q 017146          177 FTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTM--SGGTVTYEGRFEIISLSGSFLLSDNNGNRS  254 (376)
Q Consensus       177 ftphVIrV~~GEDIvekI~~Faqq~~~aicILSAiGAVSnVTLrq~~~--s~~tvt~eG~FEILSLSGnis~~d~~~~~~  254 (376)
                      ||+|++||++||||+++|++||++..+.+|+|+|+|+|++|+|++++.  .+..++|+|+|||+||+|||...+++    
T Consensus         1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g~----   76 (120)
T PF03479_consen    1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISPEDGK----   76 (120)
T ss_dssp             EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEEETTE----
T ss_pred             CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEecccEEEEEeEEEEECCCCC----
Confidence            689999999999999999999999999999999999999999999953  45688999999999999999985554    


Q ss_pred             CCCeEEEEEeCCCCcEEeeeecCceeeeccEEEEEEEcccccc
Q 017146          255 RSGGLSVSLAGSDGRVLGGLVAGMLMAASPVQVIVGSFIAEGK  297 (376)
Q Consensus       255 ~~~HLHVSLAd~dGqV~GGHL~G~lIAAstVEVVI~sF~~~~~  297 (376)
                      ++.||||+|+|.||+|+||||..+.+ ..++||+|..+.....
T Consensus        77 ~~~HlHisl~~~~g~v~gGHl~~g~v-~~t~Ev~i~~~~~~~~  118 (120)
T PF03479_consen   77 PFVHLHISLADPDGQVFGGHLLEGTV-FATAEVVITELSGINF  118 (120)
T ss_dssp             EEEEEEEEEE-TTSEEEEEEEEEEEE-EEEEEEEEEEETTEEE
T ss_pred             CcceEEEEEECCCCeEEeeEeCCCEE-eEEEEEEEEEecCccc
Confidence            58999999999999999999996666 5578999988876544

Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.

>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

Probab=99.91  E-value=1.2e-23  Score=186.13  Aligned_cols=115  Identities=23%  Similarity=0.281  Sum_probs=106.6

Q ss_pred             CceeEEEEecCCCcHHHHHHHHHHhCCceEEEEeeeceeeeEEEeCCCCC---CCeeEeecceEEEEeeeeeecCCCCCC
Q 017146          176 GFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMS---GGTVTYEGRFEIISLSGSFLLSDNNGN  252 (376)
Q Consensus       176 ~ftphVIrV~~GEDIvekI~~Faqq~~~aicILSAiGAVSnVTLrq~~~s---~~tvt~eG~FEILSLSGnis~~d~~~~  252 (376)
                      .-+.+++||++|||+++.|.+||+++.+.+++++|+|++++++|++++.+   +.+++++|+||||||.|||..++    
T Consensus         8 ~gr~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~----   83 (141)
T COG1661           8 SGRVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDD----   83 (141)
T ss_pred             cceEEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCC----
Confidence            44789999999999999999999999999999999999999999999965   45899999999999999999987    


Q ss_pred             CCCCCeEEEEEeCCCCcEEeeeecCceeeeccEEEEEEEcccccc
Q 017146          253 RSRSGGLSVSLAGSDGRVLGGLVAGMLMAASPVQVIVGSFIAEGK  297 (376)
Q Consensus       253 ~~~~~HLHVSLAd~dGqV~GGHL~G~lIAAstVEVVI~sF~~~~~  297 (376)
                        ++.|||++|++++|+++||||.++.+.. ++||+|.++.....
T Consensus        84 --p~~HlHa~l~~~~G~~~GGHL~~~~V~~-t~Ev~I~el~~~~~  125 (141)
T COG1661          84 --PFVHLHAALGDENGITLGGHLLEGEVFP-TAEVFIRELPGELF  125 (141)
T ss_pred             --CcEEEEEEEecCCCcEEeeeecccEEeE-EEEEEEEEccccce
Confidence              4799999999999999999999998876 99999999988743

>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions

Probab=96.14  E-value=0.0019  Score=36.65  Aligned_cols=12  Identities=67%  Similarity=1.088  Sum_probs=4.6

Q ss_pred             cccCCCCCCCCC
Q 017146          103 KKKRGRPRKYTP  114 (376)
Q Consensus       103 KkKRGRPRKY~p  114 (376)
                      +||||||+|+..
T Consensus         1 ~r~RGRP~k~~~   12 (13)
T PF02178_consen    1 KRKRGRPRKNAK   12 (13)
T ss_dssp             S--SS--TT---
T ss_pred             CCcCCCCccccC
Confidence            689999999864

These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.

>smart00384 AT_hook DNA binding domain with preference for A/T rich regions

Probab=96.09  E-value=0.0029  Score=42.03  Aligned_cols=15  Identities=60%  Similarity=0.922  Sum_probs=12.9

Q ss_pred             cccCCCCCCCCCCCc
Q 017146          103 KKKRGRPRKYTPDGN  117 (376)
Q Consensus       103 KkKRGRPRKY~pdg~  117 (376)
                      |||||||||+..+..
T Consensus         1 kRkRGRPrK~~~~~~   15 (26)
T smart00384        1 KRKRGRPRKAPKDXX   15 (26)
T ss_pred             CCCCCCCCCCCCccc
Confidence            699999999987764

Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).

>PF14621 RFX5_DNA_bdg: RFX5 DNA-binding domain

Probab=83.75  E-value=0.39  Score=45.43  Aligned_cols=13  Identities=69%  Similarity=1.068  Sum_probs=10.7

Q ss_pred             cCcccCCCCCCCC
Q 017146          101 PAKKKRGRPRKYT  113 (376)
Q Consensus       101 ~~KkKRGRPRKY~  113 (376)
                      .+|||||||||-.
T Consensus        66 dAKRKRGRPRKKs   78 (219)
T PF14621_consen   66 DAKRKRGRPRKKS   78 (219)
T ss_pred             hhhhhcCCCccCC
Confidence            4699999999763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	376
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	2e-25
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	3e-25
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	5e-19
3htn_A	149	Putative DNA binding protein; DUF269 family protei	3e-10
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	3e-09
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	1e-08

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A Length = 154

 Score = 99.4 bits (247), Expect = 2e-25
 Identities = 29/135 (21%), Positives = 60/135 (44%), Gaps = 10/135 (7%)

Query: 161 SGKKQLDALGGVGGVGFTPHVITVKAGEDISSKIFAFSQQ-GPRTVCILSASGAICNVTL 219
           +G      +          + + +  G+++ S++ AF QQ   R   I   +G++ +V L
Sbjct: 2   AGDPNSMTVSHHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVAL 61

Query: 220 RQPTMSGGTVTYEGRFEIISLSGSFLLSDNNGNRSRSGGLSVSLAGSDGRVLGGLVAGML 279
           R       T +  G FE+ISL+G+  L+           L ++++   G +LGG +    
Sbjct: 62  RYAG-QEATTSLTGTFEVISLNGTLELTGE--------HLHLAVSDPYGVMLGGHMMPGC 112

Query: 280 MAASPVQVIVGSFIA 294
              + +++++G   A
Sbjct: 113 TVRTTLELVIGELPA 127

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae} Length = 142

 Score = 98.9 bits (246), Expect = 3e-25
 Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 10/116 (8%)

Query: 179 PHVITVKAGEDISSKIFAF-SQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYEGRFEI 237
              + +  G D+  +I     Q       I S  G +  + +R    S  T+     FEI
Sbjct: 4   LIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLA-DSVSTLQVSAPFEI 62

Query: 238 ISLSGSFLLSDNNGNRSRSGGLSVSLAGSDGRVLGGLVAGMLMAASPVQVIVGSFI 293
           +SLSG+               L +++A + GRV GG +    +  +  ++++  + 
Sbjct: 63  LSLSGTLTYQHC--------HLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHYP 110

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii} Length = 143

 Score = 81.9 bits (202), Expect = 5e-19
 Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 8/122 (6%)

Query: 171 GVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLR---QPTMSGG 227
           G+  +G   ++  V  GE++ + I  F ++      I++  G + N  +    +      
Sbjct: 4   GMFSLG-RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYK 62

Query: 228 TVTYEGRFEIISLSGSFLLSDNNGNRSRSGGLSVSLAGSDGRVLGGLVAGMLMAASPVQV 287
            +  +G +E+ISL G+  L D            VSL   +G V GG +    +  + + +
Sbjct: 63  VIPLKGSYELISLIGNVSLKDGE----PFVHAHVSLGNEEGIVFGGHLVEGEVFVAEIFL 118

Query: 288 IV 289
             
Sbjct: 119 QE 120

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} Length = 149

 Score = 57.3 bits (138), Expect = 3e-10
 Identities = 21/112 (18%), Positives = 47/112 (41%), Gaps = 7/112 (6%)

Query: 180 HVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLR---QPTMSGGTVTYEGRFE 236
           +++++    +I   + AF ++       ++  GAI  +TLR     T +    T+  + E
Sbjct: 18  YIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQME 77

Query: 237 IISLSGSFLLSDNNGNRSRSGGLSVSLAGSDGRVLGGLVAGMLMAASPVQVI 288
           I +L+G+    +          L +++  SD   L G +   +   +   V+
Sbjct: 78  ISNLTGNISSMNEQ----VYLHLHITVGRSDYSALAGHLLSAIQNGAGEFVV 125

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3 Length = 146

 Score = 54.6 bits (131), Expect = 3e-09
 Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 8/113 (7%)

Query: 180 HVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLR---QPTMSGGTVTYEGRFE 236
            ++ +  G+D+  +I  F ++       +SA GA+ +  +    Q              E
Sbjct: 12  FLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLE 71

Query: 237 IISLSGSFLLSDNNGNRSRSGGLSVSLAGSDGRVLGGLVAGMLMAASPVQVIV 289
           I+SLSG+  + D+         + V L G DG V GG +    + A  V V+ 
Sbjct: 72  ILSLSGNVSMKDSK----PFCHIHVLL-GKDGEVYGGHLFSAEVFACEVFVLP 119

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha} Length = 147

 Score = 52.3 bits (125), Expect = 1e-08
 Identities = 12/124 (9%), Positives = 39/124 (31%), Gaps = 6/124 (4%)

Query: 178 TPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGT--VTYEGRF 235
           T +++ ++ G+++   +   ++            G +   T                   
Sbjct: 13  TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYRNV 72

Query: 236 EIISLSGSFLLSDNNGNRSRSGGLSVSLAGSDGRVLGGLVAGMLMAASPVQVIVGSFIAE 295
           E+ +++GS    +       S     ++     +  GG + G+ +     ++ V  +   
Sbjct: 73  EMANMTGSIAWKEGK----PSIHAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVYPQR 128

Query: 296 GKKS 299
             + 
Sbjct: 129 LDRF 132

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	376
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	99.94
3htn_A	149	Putative DNA binding protein; DUF269 family protei	99.94
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	99.94
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	99.93
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	99.93
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	99.91
2ezd_A	26	High mobility group protein HMG-I/HMG-Y; DNA bindi	94.98

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}

Probab=99.94  E-value=7.6e-27  Score=202.51  Aligned_cols=115  Identities=21%  Similarity=0.290  Sum_probs=103.4

Q ss_pred             eeEEEEecCCCcHHHHHHHHHHhCCceEEEEeeeceeeeEEEeCCCCCC---CeeEeecceEEEEeeeeeecCCCCCCCC
Q 017146          178 TPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSG---GTVTYEGRFEIISLSGSFLLSDNNGNRS  254 (376)
Q Consensus       178 tphVIrV~~GEDIvekI~~Faqq~~~aicILSAiGAVSnVTLrq~~~s~---~tvt~eG~FEILSLSGnis~~d~~~~~~  254 (376)
                      ++|++||++||||+++|.+||+++.+..|+++++|+|++|+||+++...   ..++++|+|||+||+|||.+.|++    
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~g~----   85 (143)
T 2dt4_A           10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDGE----   85 (143)
T ss_dssp             EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEETTE----
T ss_pred             CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCCCC----
Confidence            7999999999999999999999988887778999999999999998754   368899999999999999997654    


Q ss_pred             CCCeEEEEEeCCCCcEEeeeecCceeeeccEEEEEEEccccccc
Q 017146          255 RSGGLSVSLAGSDGRVLGGLVAGMLMAASPVQVIVGSFIAEGKK  298 (376)
Q Consensus       255 ~~~HLHVSLAd~dGqV~GGHL~G~lIAAstVEVVI~sF~~~~~K  298 (376)
                      ++.||||+|+|.||+|+||||.+++ .+ ++||+|.+|....+.
T Consensus        86 p~~HlHi~l~~~~G~v~GGHl~~g~-v~-t~Ev~i~~~~~~~~~  127 (143)
T 2dt4_A           86 PFVHAHVSLGNEEGIVFGGHLVEGE-VF-VAEIFLQELKGEKIE  127 (143)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEEEEE-EE-EEEEEEEEEEESCCE
T ss_pred             ceeeEEEEEECCCCCEeCCCCCCCc-eE-EEEEEEEEcCCCeEE
Confidence            5899999999999999999999887 55 899999999875444

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0

Probab=99.94  E-value=2.1e-26  Score=201.87  Aligned_cols=113  Identities=18%  Similarity=0.247  Sum_probs=102.9

Q ss_pred             eeEEEEecCCCcHHHHHHHHHHhCCceEEEEeeeceeeeEEEeCCCCCC---CeeEeecceEEEEeeeeeecCCCCCCCC
Q 017146          178 TPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSG---GTVTYEGRFEIISLSGSFLLSDNNGNRS  254 (376)
Q Consensus       178 tphVIrV~~GEDIvekI~~Faqq~~~aicILSAiGAVSnVTLrq~~~s~---~tvt~eG~FEILSLSGnis~~d~~~~~~  254 (376)
                      +.|++||++||||+++|.+||+++++..|+++++|+|++|+||+++.+.   ..++|+|+|||+||+|||++.|++    
T Consensus        16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG~----   91 (149)
T 3htn_A           16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNEQ----   91 (149)
T ss_dssp             TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETTE----
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCCC----
Confidence            7999999999999999999999999998888999999999999988753   368999999999999999998664    


Q ss_pred             CCCeEEEEEeCCCCcEEeeeecCceeeeccEEEEEEEcccc
Q 017146          255 RSGGLSVSLAGSDGRVLGGLVAGMLMAASPVQVIVGSFIAE  295 (376)
Q Consensus       255 ~~~HLHVSLAd~dGqV~GGHL~G~lIAAstVEVVI~sF~~~  295 (376)
                      ++.||||+|+|.||+|+||||..+ ++..++||+|.++...
T Consensus        92 p~~HlH~sl~~~~G~v~gGHl~~g-~V~~t~Ei~i~~~~~~  131 (149)
T 3htn_A           92 VYLHLHITVGRSDYSALAGHLLSA-IQNGAGEFVVEDYSER  131 (149)
T ss_dssp             EEEEEEEEEECTTSBEEEEEEEEE-EEEEEEEEEEEECCSC
T ss_pred             ceEEEEEEEECCCCCEEeEEeCCC-EEEEEEEEEEEEcCCe
Confidence            589999999999999999999988 4567999999998763

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}

Probab=99.94  E-value=9e-26  Score=196.23  Aligned_cols=112  Identities=21%  Similarity=0.340  Sum_probs=99.8

Q ss_pred             ceeEEEEecCCCcHHHHHHHHHHhCCc-eEEEEeeeceeeeEEEeCCCCCCCeeEeecceEEEEeeeeeecCCCCCCCCC
Q 017146          177 FTPHVITVKAGEDISSKIFAFSQQGPR-TVCILSASGAICNVTLRQPTMSGGTVTYEGRFEIISLSGSFLLSDNNGNRSR  255 (376)
Q Consensus       177 ftphVIrV~~GEDIvekI~~Faqq~~~-aicILSAiGAVSnVTLrq~~~s~~tvt~eG~FEILSLSGnis~~d~~~~~~~  255 (376)
                      |++|++||++||||+++|.+||++..+ ++||++++|+|++|+||+++... +++|+|+|||+||+|||.+.        
T Consensus         2 ~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~--------   72 (142)
T 2p6y_A            2 IHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS-TLQVSAPFEILSLSGTLTYQ--------   72 (142)
T ss_dssp             CEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSSC-EEEECSCEEEEEEEEEECSS--------
T ss_pred             CcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCCc-cEecCCcEEEEEeEEEEeCC--------
Confidence            789999999999999999999998665 68888999999999999999744 78899999999999999984        


Q ss_pred             CCeEEEEEeCCCCcEEeeeecCceeeeccEEEEEEEcccccc
Q 017146          256 SGGLSVSLAGSDGRVLGGLVAGMLMAASPVQVIVGSFIAEGK  297 (376)
Q Consensus       256 ~~HLHVSLAd~dGqV~GGHL~G~lIAAstVEVVI~sF~~~~~  297 (376)
                      ..||||+|+|.||+|+||||+++++++.++||+|.+|....+
T Consensus        73 ~~HlHisl~~~~G~v~GGHl~~g~~V~~t~Ev~i~~~~~~~~  114 (142)
T 2p6y_A           73 HCHLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHYPQHHF  114 (142)
T ss_dssp             CEEEEEEEECTTSCEEEEEECTTCEECC-EEEEEEECTTEEE
T ss_pred             CCEEEEEEECCCCCEEccccCCCCeEEEEEEEEEEEccCCeE
Confidence            279999999999999999999766667899999999987433

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A

Probab=99.93  E-value=9.2e-26  Score=198.71  Aligned_cols=116  Identities=24%  Similarity=0.404  Sum_probs=103.3

Q ss_pred             ccCCCceeEEEEecCCCcHHHHHHHHHHhCC-ceEEEEeeeceeeeEEEeCCCCCCCeeEeecceEEEEeeeeeecCCCC
Q 017146          172 VGGVGFTPHVITVKAGEDISSKIFAFSQQGP-RTVCILSASGAICNVTLRQPTMSGGTVTYEGRFEIISLSGSFLLSDNN  250 (376)
Q Consensus       172 ~~g~~ftphVIrV~~GEDIvekI~~Faqq~~-~aicILSAiGAVSnVTLrq~~~s~~tvt~eG~FEILSLSGnis~~d~~  250 (376)
                      +....+++|++||++||||+++|.+||+++. +++||++++|+|++|+||+++... +++|+|+|||+||+|+|++.   
T Consensus        13 ~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~---   88 (154)
T 2hx0_A           13 HNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELT---   88 (154)
T ss_dssp             CSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETT---
T ss_pred             CCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecCCcEEEEEeeeeEeCC---
Confidence            4567789999999999999999999998655 478888999999999999999754 78899999999999999985   


Q ss_pred             CCCCCCCeEEEEEeCCCCcEEeeeecCceeeeccEEEEEEEccccc
Q 017146          251 GNRSRSGGLSVSLAGSDGRVLGGLVAGMLMAASPVQVIVGSFIAEG  296 (376)
Q Consensus       251 ~~~~~~~HLHVSLAd~dGqV~GGHL~G~lIAAstVEVVI~sF~~~~  296 (376)
                           ..||||+|+|.||+|+||||++++++..++||+|.+|....
T Consensus        89 -----~~HlHisl~~~~G~v~GGHL~~g~~V~~t~Ev~i~~~~~~~  129 (154)
T 2hx0_A           89 -----GEHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPALT  129 (154)
T ss_dssp             -----EEEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECTTEE
T ss_pred             -----CCEEEEEEECCCCCEEccccCCCCcEEEEEEEEEEEccCce
Confidence                 27999999999999999999986666689999999998743

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3

Probab=99.93  E-value=3.4e-26  Score=199.06  Aligned_cols=113  Identities=22%  Similarity=0.271  Sum_probs=101.8

Q ss_pred             eeEEEEecCCCcHHHHHHHHHHhCCceEEEEeeeceeeeEEEeCCCCCC---CeeEeecceEEEEeeeeeecCCCCCCCC
Q 017146          178 TPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSG---GTVTYEGRFEIISLSGSFLLSDNNGNRS  254 (376)
Q Consensus       178 tphVIrV~~GEDIvekI~~Faqq~~~aicILSAiGAVSnVTLrq~~~s~---~tvt~eG~FEILSLSGnis~~d~~~~~~  254 (376)
                      ++|++||++||||+++|.+||+++.+..|+|+++|+|++|+||+++...   ..++++|+|||+||+|||++.|++    
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~dg~----   85 (146)
T 2h6l_A           10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSK----   85 (146)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETTE----
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCCCC----
Confidence            6999999999999999999999887776777999999999999998765   378999999999999999997654    


Q ss_pred             CCCeEEEEEeCCCCcEEeeeecCceeeeccEEEEEEEcccccc
Q 017146          255 RSGGLSVSLAGSDGRVLGGLVAGMLMAASPVQVIVGSFIAEGK  297 (376)
Q Consensus       255 ~~~HLHVSLAd~dGqV~GGHL~G~lIAAstVEVVI~sF~~~~~  297 (376)
                      ++.||||+|+ .||+|+||||++++|  .++||+|.+|....+
T Consensus        86 p~~HlHi~l~-~~G~v~gGHl~~g~V--~t~Evvi~~~~~~~~  125 (146)
T 2h6l_A           86 PFCHIHVLLG-KDGEVYGGHLFSAEV--FACEVFVLPLSGEAP  125 (146)
T ss_dssp             EEEEEEEEEE-EBTEEEEEEEEEEEE--EEEEEEEEECBSCCC
T ss_pred             ceeeEEEEEC-CCCcEEeeecCCCEE--EEEEEEEEEcCCCcE
Confidence            5899999999 999999999998885  599999999988433

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}

Probab=99.91  E-value=5e-24  Score=186.18  Aligned_cols=114  Identities=12%  Similarity=0.208  Sum_probs=101.1

Q ss_pred             eeEEEEecCCCcHHHHHHHHHHhCCceEEEEeeeceeeeEEEeCCCCCC---CeeEeecceEEEEeeeeeecCCCCCCCC
Q 017146          178 TPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSG---GTVTYEGRFEIISLSGSFLLSDNNGNRS  254 (376)
Q Consensus       178 tphVIrV~~GEDIvekI~~Faqq~~~aicILSAiGAVSnVTLrq~~~s~---~tvt~eG~FEILSLSGnis~~d~~~~~~  254 (376)
                      +.+++||++||||+++|.+||+++.+..++++++|++++|+|++++.+.   ...+++ ++||+||+|||+..|++    
T Consensus        13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~dG~----   87 (147)
T 3hwu_A           13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKEGK----   87 (147)
T ss_dssp             TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEETTE----
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCCCC----
Confidence            5799999999999999999999999999999999999999999998754   256788 89999999999987764    


Q ss_pred             CCCeEEEEEeCCCCcEEeeeecCceeeeccEEEEEEEccccc
Q 017146          255 RSGGLSVSLAGSDGRVLGGLVAGMLMAASPVQVIVGSFIAEG  296 (376)
Q Consensus       255 ~~~HLHVSLAd~dGqV~GGHL~G~lIAAstVEVVI~sF~~~~  296 (376)
                      ++.|||++|+|.||+|+||||..+.|...|+||+|..+....
T Consensus        88 p~~HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i~~~~~~~  129 (147)
T 3hwu_A           88 PSIHAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVYPQRL  129 (147)
T ss_dssp             EEEEEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEESSCC
T ss_pred             ceEEEEEEEECCCCcEEeeEecCcEEEeEeEEEEEEEcCCeE
Confidence            589999999999999999999988665459999999875533

>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*

Probab=94.98  E-value=0.012  Score=38.02  Aligned_cols=16  Identities=63%  Similarity=1.051  Sum_probs=12.8

Q ss_pred             CCccCCCCCCCCC-CCC
Q 017146          149 PSAKRHRGRPPGS-GKK  164 (376)
Q Consensus       149 ~~~kr~RGRP~GS-~K~  164 (376)
                      +..||+||||.|| ||.
T Consensus         2 ptpKrpRgRpkGSKNk~   18 (26)
T 2ezd_A            2 PTPKRPRGRPKGSKNKG   18 (26)
T ss_dssp             CSCCCCSSCCTTCCCCS
T ss_pred             CCCcCCCCCcCcccccC
Confidence            3469999999999 553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	376
d2hx0a1	136	d.290.1.3 (A:6-141) Hypothetical protein STM3071 {	7e-23
d2h6la1	138	d.290.1.3 (A:1-138) Hypothetical protein AF0104 {A	8e-16

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]} Length = 136

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

 Score = 90.7 bits (225), Expect = 7e-23
 Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 10/117 (8%)

Query: 180 HVITVKAGEDISSKIFAFS-QQGPRTVCILSASGAICNVTLRQPTMSGGTVTYEGRFEII 238
           + + +  G+++ S++ AF  Q   R   I   +G++ +V LR       T +  G FE+I
Sbjct: 9   YALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAG-QEATTSLTGTFEVI 67

Query: 239 SLSGSFLLSDNNGNRSRSGGLSVSLAGSDGRVLGGLVAGMLMAASPVQVIVGSFIAE 295
           SL+G+  L+           L ++++   G +LGG +       + +++++G   A 
Sbjct: 68  SLNGTLELTGE--------HLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPAL 116

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 138

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 71.5 bits (175), Expect = 8e-16
 Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 8/113 (7%)

Query: 180 HVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLR---QPTMSGGTVTYEGRFE 236
            ++ +  G+D+  +I  F ++       +SA GA+ +  +    Q              E
Sbjct: 12  FLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLE 71

Query: 237 IISLSGSFLLSDNNGNRSRSGGLSVSLAGSDGRVLGGLVAGMLMAASPVQVIV 289
           I+SLSG+  + D+         + V L G DG V GG +    + A  V V+ 
Sbjct: 72  ILSLSGNVSMKDSK----PFCHIHVLL-GKDGEVYGGHLFSAEVFACEVFVLP 119

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	376
d2hx0a1	136	Hypothetical protein STM3071 {Salmonella typhimuri	99.94
d2h6la1	138	Hypothetical protein AF0104 {Archaeoglobus fulgidu	99.91

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.94  E-value=1.7e-26  Score=197.67  Aligned_cols=117  Identities=24%  Similarity=0.394  Sum_probs=105.0

Q ss_pred             cCCCceeEEEEecCCCcHHHHHHHHHHhCC-ceEEEEeeeceeeeEEEeCCCCCCCeeEeecceEEEEeeeeeecCCCCC
Q 017146          173 GGVGFTPHVITVKAGEDISSKIFAFSQQGP-RTVCILSASGAICNVTLRQPTMSGGTVTYEGRFEIISLSGSFLLSDNNG  251 (376)
Q Consensus       173 ~g~~ftphVIrV~~GEDIvekI~~Faqq~~-~aicILSAiGAVSnVTLrq~~~s~~tvt~eG~FEILSLSGnis~~d~~~  251 (376)
                      +++..|.|++||++||||+++|.+||++.. +++||++++|++++|+|++++. .....++|+|||+||+|||...+   
T Consensus         2 ~~~~~R~~~lrl~~Gedl~~~i~~~~~~~~I~~a~V~~~iGs~~~~~~~~~~~-~~~~~~~g~~Ei~sl~G~I~~~~---   77 (136)
T d2hx0a1           2 NASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQ-EATTSLTGTFEVISLNGTLELTG---   77 (136)
T ss_dssp             SCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTC-SSCEEEEEEEEEEEEEEEEETTE---
T ss_pred             CCCCCcEEEEEECCCChHHHHHHHHHHHhCCCEEEEEEEeeeeEEEEEEeCCC-CCcEEecCcEEEEEEEEEeccCC---
Confidence            456789999999999999999999998765 5788999999999999999986 55678999999999999998764   


Q ss_pred             CCCCCCeEEEEEeCCCCcEEeeeecCceeeeccEEEEEEEccccccc
Q 017146          252 NRSRSGGLSVSLAGSDGRVLGGLVAGMLMAASPVQVIVGSFIAEGKK  298 (376)
Q Consensus       252 ~~~~~~HLHVSLAd~dGqV~GGHL~G~lIAAstVEVVI~sF~~~~~K  298 (376)
                           .|||++|+|.||+|+||||+++++++.++||||.+|.....+
T Consensus        78 -----~HlH~~~a~~~g~v~gGhL~~g~~v~~t~Eivi~~l~~~~~~  119 (136)
T d2hx0a1          78 -----EHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPALTFS  119 (136)
T ss_dssp             -----EEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECTTEEEE
T ss_pred             -----CeEEEEEECCCCcEEeEEecCCcEEEEEEEEEEEEccCCceE
Confidence                 699999999999999999999888899999999999875443

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.91  E-value=1.5e-24  Score=184.57  Aligned_cols=114  Identities=22%  Similarity=0.270  Sum_probs=102.0

Q ss_pred             eeEEEEecCCCcHHHHHHHHHHhCCceEEEEeeeceeeeEEEeCCCCCC---CeeEeecceEEEEeeeeeecCCCCCCCC
Q 017146          178 TPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSG---GTVTYEGRFEIISLSGSFLLSDNNGNRS  254 (376)
Q Consensus       178 tphVIrV~~GEDIvekI~~Faqq~~~aicILSAiGAVSnVTLrq~~~s~---~tvt~eG~FEILSLSGnis~~d~~~~~~  254 (376)
                      |.|++||++||||+++|.+||++..+..|+++++|++++|+|++++...   ..+.++|+|||+||+|||...|++    
T Consensus        10 r~~~~rl~~Gedl~~~l~~~~~~~~i~~a~is~iG~~~~~~l~~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g~----   85 (138)
T d2h6la1          10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSK----   85 (138)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETTE----
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEeecccceEEEecCCCCccceEecCCCEEEEEeEEEEEcCCCC----
Confidence            7899999999999999999999999999999999999999999987754   368899999999999999988876    


Q ss_pred             CCCeEEEEEeCCCCcEEeeeecCceeeeccEEEEEEEccccccc
Q 017146          255 RSGGLSVSLAGSDGRVLGGLVAGMLMAASPVQVIVGSFIAEGKK  298 (376)
Q Consensus       255 ~~~HLHVSLAd~dGqV~GGHL~G~lIAAstVEVVI~sF~~~~~K  298 (376)
                      ++.|+|+++++ +|+++||||..+.+.  ++|++|.++.....+
T Consensus        86 p~~HlH~~~~~-~g~~~gGHl~~~~v~--~~e~~i~~~~~~~~~  126 (138)
T d2h6la1          86 PFCHIHVLLGK-DGEVYGGHLFSAEVF--ACEVFVLPLSGEAPE  126 (138)
T ss_dssp             EEEEEEEEEEE-BTEEEEEEEEEEEEE--EEEEEEEECBSCCCB
T ss_pred             cEEEEEEEECC-CCCEEEEEeCccEEE--EEEEEEEEecCCceE
Confidence            58999999997 799999999988765  478999888765544