Citrus Sinensis ID: 017151

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370------
Protein Sequence
MDENSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLVSQVCLLVASAVNF
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccccccccccHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHEHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccHHHHHHHHHcccHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccHcccccccccccccccccccEEEcccccccHHHHHHEEEHHHccc
Coil and Loop (DISEMBL)
MDENSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLdsaemwsfndtstSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTqhcddvirgqntgtyqretkldefecrdvhinndadtnLVSQVCLLVASAVNF
Flexible Loop (DISEMBL)
mdenskekeneseALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKtqhcddvirgqntgtyqreTKLDEFECRDVHINNDADTNLVSQVCLLVASAVNF
Low Complexity Region (SEG)
MDenskekeneseALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMeaekakekeeLMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLVSQVCLLVASAVNF
Disordered region (IsUnstruct)
*********************************EQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACAREN**L**ELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFA***********************************************************SFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYI*********************************SVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLVSQVCLLVAS****
Disordered Region (DISOPRED)
**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************FECRDVHINN**********CLLVASAVNF
Disordered Region (DISEMBL)
**************LMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALE***********NLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLVSQVCLLVASAVNF
Disordered Region (DISPRO)
*********NESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNT*T**RETKLDEFECRDVHINNDADTNLVSQVCLLVASAVNF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDENxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQAGPSYLAVATRMHFQRxxxxxxxxxxxxxxxxxxxxxxxxxxxxLSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAxxxxxxxxxxxxxxxxxxxxxLMSQKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYxxxxxxxxxxxxxxxxxxxxxLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLVSQVCLLVASAVNF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	376	2.2.26 [Sep-21-2011]
P24043	3122	Laminin subunit alpha-2 O	no	no	0.696	0.083	0.212	0.0005

>sp|P24043|LAMA2_HUMAN Laminin subunit alpha-2 OS=Homo sapiens GN=LAMA2 PE=1 SV=4

 Score = 45.8 bits (107), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 62/292 (21%), Positives = 132/292 (45%), Gaps = 30/292 (10%)

Query: 12   SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKI 71
            SE L  +I  L  E  + RK  E++   ++  + L  ++ +      G+  E + +    
Sbjct: 1867 SEELNDKIDDLSQEIKD-RKLAEKVSQAESHAAQLNDSSAV----LDGILDEAKNISFNA 1921

Query: 72   AACARENSNLQEELSEAYRIKGQLADL-HAAEVIKNMEAEKQVKFFQGCMAAAFAERDNS 130
             A  +  SN+++ + EA ++  +  DL H A  +         +  +GC+  +F   + +
Sbjct: 1922 TAAFKAYSNIKDYIDEAEKVAKEAKDLAHEATKLATGPRGLLKEDAKGCLQKSFRILNEA 1981

Query: 131  VMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQ---------------NATLRFD 175
               A   KE E+      N  +TR+E   + N +L +                 A L+  
Sbjct: 1982 KKLANDVKENED----HLNGLKTRIENADARNGDLLRTLNDTLGKLSAIPNDTAAKLQAV 2037

Query: 176  LEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYIS 235
             +K  + N++ K+V+ +  E+  Q+L+ L+ ++      +   +A +    D S +K I+
Sbjct: 2038 KDKARQANDTAKDVLAQITEL-HQNLDGLKKNYNKLADSVAKTNAVV---KDPSKNKIIA 2093

Query: 236  ALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAI 287
              +  ++      + L  KL+   E+E++LKK++ E+ K++I+  +  +N+I
Sbjct: 2094 DADATVKNLEQEADRLIDKLKPIKELEDNLKKNISEI-KELINQARKQANSI 2144

Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components.
Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	376
255583327	658	conserved hypothetical protein [Ricinus	0.938	0.536	0.701	1e-127
296083035	673	unnamed protein product [Vitis vinifera]	0.952	0.531	0.672	1e-123
359475478	721	PREDICTED: uncharacterized protein LOC10	0.952	0.496	0.672	1e-123
356495819	653	PREDICTED: uncharacterized protein LOC10	0.920	0.529	0.633	1e-108
15225987	629	myosin heavy chain-related protein [Arab	0.957	0.572	0.596	1e-106
449438615	641	PREDICTED: uncharacterized protein LOC10	0.829	0.486	0.658	1e-106
297831932	629	predicted protein [Arabidopsis lyrata su	0.960	0.573	0.597	1e-105
238479244	652	myosin heavy chain-related protein [Arab	0.957	0.552	0.596	1e-105
449479020	641	PREDICTED: uncharacterized LOC101211967	0.829	0.486	0.651	1e-105
357480651	586	hypothetical protein MTR_5g005010 [Medic	0.938	0.602	0.573	1e-104

>gi|255583327|ref|XP_002532426.1| conserved hypothetical protein [Ricinus communis] gi|223527875|gb|EEF29967.1| conserved hypothetical protein [Ricinus communis]

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 249/355 (70%), Positives = 286/355 (80%), Gaps = 2/355 (0%)

Query: 12  SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKI 71
           +E+L+ARIQQLEHERDEL KDIEQLCMQQAGPSYLAVAT+MHFQRTAGLEQEIE LK+K+
Sbjct: 8   NESLIARIQQLEHERDELHKDIEQLCMQQAGPSYLAVATKMHFQRTAGLEQEIENLKKKL 67

Query: 72  AACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSV 131
           AAC R+N NLQEELSEAYRIK QLADLH AEV KN EAEKQ+KFFQGC+A+AFAERDNS+
Sbjct: 68  AACTRDNLNLQEELSEAYRIKSQLADLHNAEVAKNKEAEKQLKFFQGCVASAFAERDNSI 127

Query: 132 MEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVIN 191
           MEAEKAKEKEELMSQKFNEFQ RLEEL+S+ +E K+QN  L+ +L KQEE NES K+V N
Sbjct: 128 MEAEKAKEKEELMSQKFNEFQKRLEELTSDCLEQKRQNEALQINLAKQEEQNESLKKVAN 187

Query: 192 KFYEIRQQSLEVLE-TSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVEN 250
           KFYEIRQ SLE  E  SWEDKC  LL DS EMWS+ND STS YISALE+ELE+ R S +N
Sbjct: 188 KFYEIRQHSLEGFEDASWEDKCTWLLHDSKEMWSYNDASTSNYISALEEELEQVRKSADN 247

Query: 251 LQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRS 310
           LQSKLR+GLEIENHLKK VRELEKK I  DK + N IA LR  HS+ R H++N L EG+ 
Sbjct: 248 LQSKLRVGLEIENHLKKQVRELEKKQIQLDKMVMNGIAGLRHYHSEHRGHIMNLLNEGKL 307

Query: 311 HIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLVSQ 365
           H+KS  D++EEK        + QN    QR   L+E ECRDVHI+ND  + L+S+
Sbjct: 308 HMKSTMDMLEEKIGETYGS-KEQNLRPSQRVIDLEENECRDVHISNDIGSALISE 361

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083035|emb|CBI22439.3| unnamed protein product [Vitis vinifera]

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 244/363 (67%), Positives = 291/363 (80%), Gaps = 5/363 (1%)

Query: 7   EKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEI 66
           EK N++E+L+ARIQQLEHERDELRKDIEQLC+QQAGPSYL VATRMHFQRTAGLEQEIE 
Sbjct: 3   EKSNDNESLIARIQQLEHERDELRKDIEQLCIQQAGPSYLVVATRMHFQRTAGLEQEIEN 62

Query: 67  LKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAE 126
           LK+K+AA  REN NLQEELSEAYRIK QLADLH AEV KN++AEKQ+KFFQGC+AAAFAE
Sbjct: 63  LKKKVAASTRENLNLQEELSEAYRIKSQLADLHNAEVSKNLDAEKQIKFFQGCVAAAFAE 122

Query: 127 RDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESF 186
           RD+S+MEAEKAKEKEEL  Q+FN FQ R++EL S+N++ K+ N  L+ DL  QE+ NE+F
Sbjct: 123 RDHSIMEAEKAKEKEELALQEFNNFQKRIKELESDNLKQKQLNVALQIDLANQEDQNETF 182

Query: 187 KEVINKFYEIRQQSLEVLE-TSWEDKCACLLLDSAEMWSFN---DTSTSKYISALEDELE 242
           K+VINKF+EIRQ SLE  E  +W+DKC CLL D  EMWSFN   +TSTSKYI ALE+ELE
Sbjct: 183 KKVINKFFEIRQYSLEAFEDANWDDKCGCLLSDPVEMWSFNTNEETSTSKYIDALEEELE 242

Query: 243 KTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVV 302
             R+SV+NLQ+KLR+GLEIENHLKK V ELEK+ I S +   N I+ L   HSQ R+HVV
Sbjct: 243 MVRNSVDNLQNKLRVGLEIENHLKKKVSELEKQKIISHQMFKNRISGLLHYHSQHRLHVV 302

Query: 303 NSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNL 362
           N L+EG+SH+KSI DV+EEK +   D  R QN    QR+ KL E ECRDVH++   D N 
Sbjct: 303 NLLDEGKSHLKSIIDVVEEKIRQL-DADREQNLEPPQRDLKLYENECRDVHVSIVGDHNS 361

Query: 363 VSQ 365
           V++
Sbjct: 362 VAE 364

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475478|ref|XP_002264967.2| PREDICTED: uncharacterized protein LOC100251573 [Vitis vinifera]

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 244/363 (67%), Positives = 291/363 (80%), Gaps = 5/363 (1%)

Query: 7   EKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEI 66
           EK N++E+L+ARIQQLEHERDELRKDIEQLC+QQAGPSYL VATRMHFQRTAGLEQEIE 
Sbjct: 3   EKSNDNESLIARIQQLEHERDELRKDIEQLCIQQAGPSYLVVATRMHFQRTAGLEQEIEN 62

Query: 67  LKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAE 126
           LK+K+AA  REN NLQEELSEAYRIK QLADLH AEV KN++AEKQ+KFFQGC+AAAFAE
Sbjct: 63  LKKKVAASTRENLNLQEELSEAYRIKSQLADLHNAEVSKNLDAEKQIKFFQGCVAAAFAE 122

Query: 127 RDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESF 186
           RD+S+MEAEKAKEKEEL  Q+FN FQ R++EL S+N++ K+ N  L+ DL  QE+ NE+F
Sbjct: 123 RDHSIMEAEKAKEKEELALQEFNNFQKRIKELESDNLKQKQLNVALQIDLANQEDQNETF 182

Query: 187 KEVINKFYEIRQQSLEVLE-TSWEDKCACLLLDSAEMWSFN---DTSTSKYISALEDELE 242
           K+VINKF+EIRQ SLE  E  +W+DKC CLL D  EMWSFN   +TSTSKYI ALE+ELE
Sbjct: 183 KKVINKFFEIRQYSLEAFEDANWDDKCGCLLSDPVEMWSFNTNEETSTSKYIDALEEELE 242

Query: 243 KTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVV 302
             R+SV+NLQ+KLR+GLEIENHLKK V ELEK+ I S +   N I+ L   HSQ R+HVV
Sbjct: 243 MVRNSVDNLQNKLRVGLEIENHLKKKVSELEKQKIISHQMFKNRISGLLHYHSQHRLHVV 302

Query: 303 NSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNL 362
           N L+EG+SH+KSI DV+EEK +   D  R QN    QR+ KL E ECRDVH++   D N 
Sbjct: 303 NLLDEGKSHLKSIIDVVEEKIRQL-DADREQNLEPPQRDLKLYENECRDVHVSIVGDHNS 361

Query: 363 VSQ 365
           V++
Sbjct: 362 VAE 364

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495819|ref|XP_003516769.1| PREDICTED: uncharacterized protein LOC100775191 [Glycine max]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 221/349 (63%), Positives = 271/349 (77%), Gaps = 3/349 (0%)

Query: 11  ESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQK 70
           + E+L+ARIQQLE ERDELRKDIEQLCMQQAGP YLAVATRMHFQRTAGLEQEIE LK+K
Sbjct: 6   DDESLLARIQQLEQERDELRKDIEQLCMQQAGPGYLAVATRMHFQRTAGLEQEIESLKKK 65

Query: 71  IAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNS 130
           +AAC REN NLQEELSEAYRIKGQLADLH+AEV KNMEAEKQVKFFQGC+AAAF+ERD +
Sbjct: 66  LAACTRENLNLQEELSEAYRIKGQLADLHSAEVSKNMEAEKQVKFFQGCVAAAFSERDQA 125

Query: 131 VMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVI 190
           ++EAEKAKEKEE M Q+ N    R+EEL+S+ ++LK+ N  L+ D     + NE+  +VI
Sbjct: 126 IIEAEKAKEKEETMLQQINGIHKRVEELTSDCLKLKEFNDALQIDQAVHMKQNENCMKVI 185

Query: 191 NKFYEIRQQSLEVLE-TSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVE 249
           NKF++IRQ SL+  E  SW +KCACLL DS E+WSFND STSKYISALE++LE+ R+S++
Sbjct: 186 NKFFQIRQHSLKEFEDMSWNEKCACLLGDSEEVWSFNDASTSKYISALEEQLERLRNSMD 245

Query: 250 NLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGR 309
            LQ+KLR+GLEIENHLKK V  LE K I  DK I N+IA+L+  HS+ R  ++N L +G 
Sbjct: 246 YLQNKLRVGLEIENHLKKRVNALENKQISMDKVIENSIADLKHYHSKCRDEIMNLLGDGE 305

Query: 310 SHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDA 358
           S IKSI + I+EK    D  +      T QR+ + +E EC D+HI+  A
Sbjct: 306 SSIKSIINAIDEKVWSFD--LSTVPNLTPQRDAEPEESECADLHISPQA 352

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15225987|ref|NP_179075.1| myosin heavy chain-related protein [Arabidopsis thaliana] gi|334184229|ref|NP_001189526.1| myosin heavy chain-related protein [Arabidopsis thaliana] gi|3810592|gb|AAC69374.1| unknown protein [Arabidopsis thaliana] gi|330251225|gb|AEC06319.1| myosin heavy chain-related protein [Arabidopsis thaliana] gi|330251227|gb|AEC06321.1| myosin heavy chain-related protein [Arabidopsis thaliana]

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 220/369 (59%), Positives = 268/369 (72%), Gaps = 9/369 (2%)

Query: 1   MDENSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGL 60
           MD N  E EN    L ARI+QLEHER+EL+KDIEQLCMQQ GPS L VA RMHFQRTA L
Sbjct: 1   MDLNLDENEN----LKARIKQLEHERNELQKDIEQLCMQQGGPSILGVAARMHFQRTASL 56

Query: 61  EQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCM 120
           EQEIE LK K+AAC RE  NLQEEL+EAYR+K QLADLHA EV KN+EAEKQV+FFQG +
Sbjct: 57  EQEIESLKLKLAACTREKHNLQEELAEAYRVKAQLADLHAGEVAKNLEAEKQVRFFQGSV 116

Query: 121 AAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQE 180
           AAAF+ERD SVMEAEKA+E  E+MSQK +E + RLEELSS+ +  K+ N TL+ DL K E
Sbjct: 117 AAAFSERDKSVMEAEKAEENAEMMSQKLSEIEMRLEELSSDCLVQKRLNDTLQADLAKLE 176

Query: 181 ELNESFKEVINKFYEIRQQSL-EVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALED 239
           E   ++  VI KFY+IR+ SL E LE S  +KCA LL D  E W+FND STS Y++ALE 
Sbjct: 177 EQTRTYAGVIEKFYDIRKASLCESLEMSLHEKCASLLDDPIESWTFNDPSTSDYVAALEG 236

Query: 240 ELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRV 299
           EL K +++V+NLQSKLR+GLEIENHLKK VR LEKK I +D  I N I ++R  HSQLR 
Sbjct: 237 ELGKVKNTVDNLQSKLRVGLEIENHLKKRVRALEKKNIVADGLIVNGITDIRHHHSQLRA 296

Query: 300 HVVNSLEEGRSHIKSISDVIEEKTQ-HCDDVIRGQNTGTYQRETKLDEFECRDVHINNDA 358
           +++  L E   +IKSIS  +EEK + H  +V   QN    Q + K DE ECRDVH+    
Sbjct: 297 YIIALLNEEGLYIKSISKNVEEKLKLHSSEV---QNVVPPQHDLKPDESECRDVHMTTVV 353

Query: 359 DTNLVSQVC 367
           ++  V+++ 
Sbjct: 354 ESCQVTKLA 362

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438615|ref|XP_004137083.1| PREDICTED: uncharacterized protein LOC101211967 [Cucumis sativus]

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/313 (65%), Positives = 254/313 (81%), Gaps = 1/313 (0%)

Query: 11  ESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQK 70
           ++E L+ RIQQLE+ERDELRKDIEQLCMQQAGP YL+VATRMHFQRTAGLEQEIE LK+K
Sbjct: 7   DNEHLLTRIQQLEYERDELRKDIEQLCMQQAGPGYLSVATRMHFQRTAGLEQEIENLKKK 66

Query: 71  IAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNS 130
            AAC REN NLQEEL+EAYRIK QLADLH++EV KN+E+EKQ+KFFQGC+A AFAERD+S
Sbjct: 67  FAACTRENHNLQEELAEAYRIKSQLADLHSSEVAKNLESEKQLKFFQGCVATAFAERDHS 126

Query: 131 VMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVI 190
           +MEAEKAKEKEE MSQK  E + RLEELSS+ + L++ N TLR +L KQEE NE  K+VI
Sbjct: 127 IMEAEKAKEKEETMSQKLKEVENRLEELSSDCLNLRETNDTLRINLAKQEEWNEVSKQVI 186

Query: 191 NKFYEIRQQSLE-VLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVE 249
           NKFYEIRQ SLE  ++TSW++KC CLL DS+EMWSFND+ST +YI++LE+ LE  + +V+
Sbjct: 187 NKFYEIRQNSLEGFMDTSWDEKCQCLLHDSSEMWSFNDSSTFRYINSLEEGLETMKKTVD 246

Query: 250 NLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGR 309
           NLQ+KLRMG+EIE HLK  V +LE K+IH D  + + I+     +SQ R H++N LE+  
Sbjct: 247 NLQNKLRMGVEIEKHLKGKVHDLELKLIHMDDMVKSKISGFCQNYSQYRDHILNLLEKEM 306

Query: 310 SHIKSISDVIEEK 322
           S++ S    IEEK
Sbjct: 307 SNMHSTIGEIEEK 319

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831932|ref|XP_002883848.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297329688|gb|EFH60107.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 220/368 (59%), Positives = 269/368 (73%), Gaps = 7/368 (1%)

Query: 1   MDENSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGL 60
           MD N  E EN    L ARI+QLEHER+EL+KDIEQLCMQQ GPS L VATRMHFQRTA L
Sbjct: 1   MDLNLDENEN----LKARIKQLEHERNELQKDIEQLCMQQGGPSILGVATRMHFQRTASL 56

Query: 61  EQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCM 120
           EQEIE LK K+AAC RE  NLQEEL+EAYR+K QLADLHA EV KN+EAEKQV+FFQG +
Sbjct: 57  EQEIESLKLKLAACTREKHNLQEELAEAYRVKTQLADLHAGEVAKNLEAEKQVRFFQGSV 116

Query: 121 AAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQE 180
           AAAF+ERD SVMEAEKA+E  E+MSQK  E + RLEELSS+ +  K+ N TL+ DL K E
Sbjct: 117 AAAFSERDKSVMEAEKAEENAEMMSQKLGEIEMRLEELSSDCLVQKRLNDTLQADLAKLE 176

Query: 181 ELNESFKEVINKFYEIRQQSL-EVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALED 239
           E   ++ +VI KF +IR+ SL E LE S  +KCA LL D  E W+FND STS+Y++ALE 
Sbjct: 177 EQTRTYAQVIEKFDDIRKASLCESLEMSLHNKCASLLDDPIESWTFNDPSTSEYVAALEG 236

Query: 240 ELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRV 299
           EL K +++V+NLQSKLR+GLEIENHLKK VR LEKK I +D+ I N I ++R  HSQLR 
Sbjct: 237 ELGKVKNTVDNLQSKLRVGLEIENHLKKRVRALEKKNIVADRLIVNGITDIRHHHSQLRA 296

Query: 300 HVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDAD 359
           ++++ L E   +IKSIS  +EEK +     IR  N    Q + K DE ECRDVHI    +
Sbjct: 297 YIIDLLTEEGLYIKSISKNVEEKLKLHSSEIR--NVVPLQHDFKPDESECRDVHITTVVE 354

Query: 360 TNLVSQVC 367
           +  V+++ 
Sbjct: 355 SCQVTKLA 362

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238479244|ref|NP_001154517.1| myosin heavy chain-related protein [Arabidopsis thaliana] gi|330251226|gb|AEC06320.1| myosin heavy chain-related protein [Arabidopsis thaliana]

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 220/369 (59%), Positives = 268/369 (72%), Gaps = 9/369 (2%)

Query: 1   MDENSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGL 60
           MD N  E EN    L ARI+QLEHER+EL+KDIEQLCMQQ GPS L VA RMHFQRTA L
Sbjct: 1   MDLNLDENEN----LKARIKQLEHERNELQKDIEQLCMQQGGPSILGVAARMHFQRTASL 56

Query: 61  EQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCM 120
           EQEIE LK K+AAC RE  NLQEEL+EAYR+K QLADLHA EV KN+EAEKQV+FFQG +
Sbjct: 57  EQEIESLKLKLAACTREKHNLQEELAEAYRVKAQLADLHAGEVAKNLEAEKQVRFFQGSV 116

Query: 121 AAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQE 180
           AAAF+ERD SVMEAEKA+E  E+MSQK +E + RLEELSS+ +  K+ N TL+ DL K E
Sbjct: 117 AAAFSERDKSVMEAEKAEENAEMMSQKLSEIEMRLEELSSDCLVQKRLNDTLQADLAKLE 176

Query: 181 ELNESFKEVINKFYEIRQQSL-EVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALED 239
           E   ++  VI KFY+IR+ SL E LE S  +KCA LL D  E W+FND STS Y++ALE 
Sbjct: 177 EQTRTYAGVIEKFYDIRKASLCESLEMSLHEKCASLLDDPIESWTFNDPSTSDYVAALEG 236

Query: 240 ELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRV 299
           EL K +++V+NLQSKLR+GLEIENHLKK VR LEKK I +D  I N I ++R  HSQLR 
Sbjct: 237 ELGKVKNTVDNLQSKLRVGLEIENHLKKRVRALEKKNIVADGLIVNGITDIRHHHSQLRA 296

Query: 300 HVVNSLEEGRSHIKSISDVIEEKTQ-HCDDVIRGQNTGTYQRETKLDEFECRDVHINNDA 358
           +++  L E   +IKSIS  +EEK + H  +V   QN    Q + K DE ECRDVH+    
Sbjct: 297 YIIALLNEEGLYIKSISKNVEEKLKLHSSEV---QNVVPPQHDLKPDESECRDVHMTTVV 353

Query: 359 DTNLVSQVC 367
           ++  V+++ 
Sbjct: 354 ESCQVTKLA 362

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449479020|ref|XP_004155483.1| PREDICTED: uncharacterized LOC101211967 [Cucumis sativus]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/313 (65%), Positives = 253/313 (80%), Gaps = 1/313 (0%)

Query: 11  ESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQK 70
           ++E L+ RIQQLE+ERDELRKDIEQLCMQQAGP YL+VATRMHFQRTAGLEQEIE LK+K
Sbjct: 7   DNEHLLTRIQQLEYERDELRKDIEQLCMQQAGPGYLSVATRMHFQRTAGLEQEIENLKKK 66

Query: 71  IAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNS 130
            AAC REN NLQEEL+EAYRIK QLADLH++EV KN+E+EKQ+KFFQGC+A AFAERD+S
Sbjct: 67  FAACTRENHNLQEELAEAYRIKSQLADLHSSEVAKNLESEKQLKFFQGCVATAFAERDHS 126

Query: 131 VMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVI 190
           +MEAEKAKEKEE MSQK  E + RLEELSS+ + L++ N TLR +L KQEE NE  K+VI
Sbjct: 127 IMEAEKAKEKEETMSQKLKEVENRLEELSSDCLNLRETNDTLRINLAKQEEWNEVSKQVI 186

Query: 191 NKFYEIRQQSLE-VLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVE 249
           NKFYEIRQ SL+  ++TSW++KC CLL DS+EMWSFND+ST +YI++LE+ LE  + +V+
Sbjct: 187 NKFYEIRQNSLDGFMDTSWDEKCQCLLHDSSEMWSFNDSSTFRYINSLEEGLETMKKTVD 246

Query: 250 NLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGR 309
           NLQ+KLRMG+EIE HLK  V +LE K+IH D  + + I+     +SQ R H++N LE+  
Sbjct: 247 NLQNKLRMGVEIEKHLKGKVHDLELKLIHMDDMVKSKISGFCQNYSQYRDHILNLLEKEM 306

Query: 310 SHIKSISDVIEEK 322
           S++ S     EEK
Sbjct: 307 SNMHSTIGEFEEK 319

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357480651|ref|XP_003610611.1| hypothetical protein MTR_5g005010 [Medicago truncatula] gi|355511946|gb|AES93569.1| hypothetical protein MTR_5g005010 [Medicago truncatula]

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/356 (57%), Positives = 268/356 (75%), Gaps = 3/356 (0%)

Query: 1   MDENSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGL 60
           M E   E  N  E+L+ RI+QLEHERDELRKDIEQLCMQQAGP+YL+VATRMHFQRTAGL
Sbjct: 1   MAEPEAEDMNHHESLLGRIRQLEHERDELRKDIEQLCMQQAGPAYLSVATRMHFQRTAGL 60

Query: 61  EQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCM 120
           EQEI+ L+ K+AA   +  NLQ++LS+AYRIK QLADLHAAE+ KN+EAEKQ+KFFQGC+
Sbjct: 61  EQEIQTLQNKLAASTTDTLNLQDQLSQAYRIKAQLADLHAAELSKNIEAEKQLKFFQGCV 120

Query: 121 AAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQE 180
           A AF+ERD++++EAEKAKE E+ MSQ+ + F  R+EEL+S   + K+ N  L+ D     
Sbjct: 121 ATAFSERDHAIIEAEKAKEMEDAMSQQIHGFLKRIEELTSVCCKQKELNYALQSDQAMYI 180

Query: 181 ELNESFKEVINKFYEIRQQSL-EVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALED 239
           E NE FK+VINKF++IRQ S  E  +TSW+ K  CLL DS E+WSFND STSKYISALE+
Sbjct: 181 EQNEKFKKVINKFFQIRQYSQKECDDTSWDVKSTCLLDDSEELWSFNDASTSKYISALEE 240

Query: 240 ELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRV 299
           +L+K  +SV+ LQSKLR+GLEIENHLKK +  +E+  I+ +K I N IA+L+  H + R 
Sbjct: 241 QLDKVNNSVDCLQSKLRVGLEIENHLKKRINLMEQNQIYMNKVIENGIADLKHHHFKYRD 300

Query: 300 HVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHIN 355
           H++N L +G S IKS  +VI+E+ +  ++ I  +    +QR+ + +E ECRD HI+
Sbjct: 301 HIMNLLRDGESTIKSTINVIDERIRRFNENI--EPNLVHQRDKEREENECRDAHIS 354

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	376
TAIR|locus:2064247	652	MEE13 "AT2G14680" [Arabidopsis	0.928	0.535	0.584	9.4e-98
WB|WBGene00010306	1133	F59A2.6 [Caenorhabditis elegan	0.776	0.257	0.215	6.7e-08
TAIR|locus:2152985	1586	CIP1 "COP1-interactive protein	0.848	0.201	0.218	3.5e-07
TAIR|locus:2012370	336	AT1G09470 "AT1G09470" [Arabido	0.789	0.883	0.198	1.3e-06
UNIPROTKB|E1BU01	1718	CDC42BPB "Uncharacterized prot	0.827	0.181	0.224	1.8e-06
DICTYBASE|DDB_G0274893	915	DDB_G0274893 "unknown" [Dictyo	0.720	0.296	0.224	3e-06
UNIPROTKB|F1N1F8	3077	CENPF "Uncharacterized protein	0.779	0.095	0.193	5.6e-06
UNIPROTKB|F1NNI6	3103	LOC100858793 "Uncharacterized	0.827	0.100	0.233	5.6e-06
UNIPROTKB|F1MYN2	1194	CGN "Uncharacterized protein"	0.869	0.273	0.238	8.8e-06
UNIPROTKB|P11055	1940	MYH3 "Myosin-3" [Homo sapiens	0.707	0.137	0.219	9.3e-06

TAIR|locus:2064247 MEE13 "AT2G14680" [Arabidopsis thaliana (taxid:3702)]

 Score = 971 (346.9 bits), Expect = 9.4e-98, P = 9.4e-98
 Identities = 207/354 (58%), Positives = 254/354 (71%)

Query:    15 LMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAAC 74
             L ARI+QLEHER+EL+KDIEQLCMQQ GPS L VA RMHFQRTA LEQEIE LK K+AAC
Sbjct:    11 LKARIKQLEHERNELQKDIEQLCMQQGGPSILGVAARMHFQRTASLEQEIESLKLKLAAC 70

Query:    75 ARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMXX 134
              RE  NLQEEL+EAYR+K QLADLHA EV KN+EAEKQV+FFQG +AAAF+ERD SVM  
Sbjct:    71 TREKHNLQEELAEAYRVKAQLADLHAGEVAKNLEAEKQVRFFQGSVAAAFSERDKSVMEA 130

Query:   135 XXXXXXXXLMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFY 194
                     +MSQK +E + RLEELSS+ +  K+ N TL+ DL K EE   ++  VI KFY
Sbjct:   131 EKAEENAEMMSQKLSEIEMRLEELSSDCLVQKRLNDTLQADLAKLEEQTRTYAGVIEKFY 190

Query:   195 EIRQQSL-EVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQS 253
             +IR+ SL E LE S  +KCA LL D  E W+FND STS Y++ALE EL K +++V+NLQS
Sbjct:   191 DIRKASLCESLEMSLHEKCASLLDDPIESWTFNDPSTSDYVAALEGELGKVKNTVDNLQS 250

Query:   254 KLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIK 313
             KLR+GLEIENHLKK VR LEKK I +D  I N I ++R  HSQLR +++  L E   +IK
Sbjct:   251 KLRVGLEIENHLKKRVRALEKKNIVADGLIVNGITDIRHHHSQLRAYIIALLNEEGLYIK 310

Query:   314 SISDVIEEKTQ-HCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLVSQV 366
             SIS  +EEK + H  +V   QN    Q + K DE ECRDVH+    ++  V+++
Sbjct:   311 SISKNVEEKLKLHSSEV---QNVVPPQHDLKPDESECRDVHMTTVVESCQVTKL 361

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0008284 "positive regulation of cell proliferation" evidence=RCA

WB|WBGene00010306 F59A2.6 [Caenorhabditis elegans (taxid:6239)]

 Score = 157 (60.3 bits), Expect = 6.7e-08, P = 6.7e-08
 Identities = 70/325 (21%), Positives = 159/325 (48%)

Query:    15 LMARIQQLEHER-DELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAA 73
             L A++Q++E E+ + L   + +   Q A    L    ++H Q     E+++E++K ++  
Sbjct:   624 LEAKLQEIEEEKKNALNASLAEKEQQTAQIQELQA--QLH-QLEVEKEEKLEMVKVQLQQ 680

Query:    74 CARENSNLQEEL-SEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGC---MAAAFAERDN 129
              A+ +S++++ L +E  +++ +L ++  A++  + + E++V+        M   F  ++ 
Sbjct:   681 AAQSSSSVEQALRAEIEKLEAKLQEIEKAKMQNSSKREQKVRELSNLNEKMRVEFIAKEK 740

Query:   130 SV--MXXXXXXXXXXLMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFK 187
              +  +          L+ QK    +T+++      +E +++ AT   + EK EE+    +
Sbjct:   741 IISDLRSELSTISTELVVQKATVEKTKMD---FGELETREKRATADRENEKMEEIR--LR 795

Query:   188 EVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSS 247
             E   K  E    +LEV ET++ +     L  SAE         +K  S  E++L+K ++S
Sbjct:   796 ETFAKELETMGSALEVKETAYNE-----LKASAEK------KIAKLTSQFEEKLKKAQNS 844

Query:   248 VENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEE 307
              +   S+ R    +E   +++  E E+K+   ++ + ++ +E+     +L++  + S E+
Sbjct:   845 QDEA-SESRFKT-LEASAEQAKLESEQKLRALEELLKSSESEIE----ELKIKEI-SAEK 897

Query:   308 GRSHIKSISDVIEEKTQHCDDVIRG 332
              RSH +   +++E + +   D I G
Sbjct:   898 DRSHWEVEKEMLEGEAKELTDRIEG 922

GO:0000042 "protein targeting to Golgi" evidence=IEA

TAIR|locus:2152985 CIP1 "COP1-interactive protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 3.5e-07, P = 3.5e-07
 Identities = 76/348 (21%), Positives = 157/348 (45%)

Query:    15 LMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAAC 74
             L A+++  + +  +L   ++    +    S   V T    ++T    QE+     K+   
Sbjct:   440 LEAQLESSKQQVSDLSASLKAAEEENKAISSKNVETMNKLEQTQNTIQELMAELGKLKDS 499

Query:    75 ARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMXX 134
              RE  +    L E +    + + +H  E+ + +E+ K++   +       AE +  V+  
Sbjct:   500 HREKESELSSLVEVHETHQRDSSIHVKELEEQVESSKKL-VAELNQTLNNAEEEKKVLSQ 558

Query:   135 XXXXXXXXLMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESF-KEVINKF 193
                      +S +  E Q  ++EL SE+ +LK+ ++    DL    +++E+  +E   + 
Sbjct:   559 KIAE-----LSNEIKEAQNTIQELVSESGQLKESHSVKDRDLFSLRDIHETHQRESSTRV 613

Query:   194 YEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQS 253
              E+  Q    LE+S E + + L +D  +    N   +SK +  + D+LE+ +++++ L  
Sbjct:   614 SELEAQ----LESS-EQRISDLTVDLKDAEEENKAISSKNLEIM-DKLEQAQNTIKELMD 667

Query:   254 KLR----MGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGR 309
             +L        E E+ L   V+  ++++    + + NA  E ++  SQ  + + N ++E +
Sbjct:   668 ELGELKDRHKEKESELSSLVKSADQQVADMKQSLDNAEEEKKML-SQRILDISNEIQEAQ 726

Query:   310 SHIKS-ISDVIEEKTQHCDDVIRGQNTG------TYQRE--TKLDEFE 348
               I+  +S+  + K  H   V   + TG      T+QRE  T+L E E
Sbjct:   727 KTIQEHMSESEQLKESH--GVKERELTGLRDIHETHQRESSTRLSELE 772

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005856 "cytoskeleton" evidence=IDA

GO:0042306 "regulation of protein import into nucleus" evidence=TAS

TAIR|locus:2012370 AT1G09470 "AT1G09470" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 63/317 (19%), Positives = 140/317 (44%)

Query:    25 ERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACAREN--SNLQ 82
             E D L KD+ +   Q    + +++AT +   RT   EQE    K+ ++    E     ++
Sbjct:     9 EDDPLLKDLSEK-KQSFRRNVVSLATELKEARTRLAEQERSCSKEAMSRQEAETRVKRME 67

Query:    83 EELSE-AYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMXXXXXXXXX 141
             +E+ E A  +  ++  + A++V    +  K++   +  +AA  A  + S +         
Sbjct:    68 DEMHELAKELNEKVEQIRASDVATE-KFVKELADIKSQLAATHATAEASALSAESAHSHC 126

Query:   142 XLMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSL 201
              ++S++ +E    L+E   +   L +Q   LR +L  +E   +  ++ + K      +++
Sbjct:   127 RVLSKQLHERTGSLKEHEDQVTRLGEQLENLRKELRVRESSQKQLRDELLKVEGDIMRAV 186

Query:   202 EVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGL-E 260
              V++T    +   +L +       N    +K ++A +DE+ + R  ++ + +  R    E
Sbjct:   187 SVVKTKENSEVRNMLNEDTPK---NSERINKLLTAKDDEIARLRDELKIISAHWRFKTKE 243

Query:   261 IENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIE 320
             +E+ +     E +++I   D+ +   + +L  C  + R+      + G  +  +I ++ E
Sbjct:   244 LEDQV-----ENQRRI---DQELKKKVLKLEFCLRETRIQTRKLQKMGERNDVAIQELKE 295

Query:   321 E---KTQHCDDVIRGQN 334
             +   K QH  D    QN
Sbjct:   296 QLAAKKQHEADHSSNQN 312

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

UNIPROTKB|E1BU01 CDC42BPB "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 146 (56.5 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 76/339 (22%), Positives = 151/339 (44%)

Query:    18 RIQQLEHERDELRKDIE---QLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAAC 74
             +I++LE E+ +L + ++   Q      GP+ + V T    +    L +EIE LK K+   
Sbjct:   447 KIRKLEQEKQDLNRKLQESTQTVQSLQGPACVTVNTNRD-REIKKLNEEIERLKNKLT-- 503

Query:    75 ARENSNLQEELSEAYRIKGQLAD-LHAAEVI-KNMEAEKQVKFFQGCMAAAFAER-DNSV 131
               + S L+ +L++A   + +  D +H  + + K     +Q K          +ER     
Sbjct:   504 --DVSKLEGQLADAVAFRQEHEDCMHKLKGLEKQCRVLRQEKEDLHKQLVEASERLKTQS 561

Query:   132 MXXXXXXXXXXLMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVIN 191
                        L  Q+F+E   R+ EL S+  +L +Q      ++E   + N++ ++ I 
Sbjct:   562 KELRDAHQQRKLAVQEFSELSERMGELRSQKQKLSRQLRDKEEEVEMSLQKNDAMRQDIR 621

Query:   192 KFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENL 251
             K  +IR++    LE+  E+    ++ ++++     + S   +   LE+ELE  +  V+  
Sbjct:   622 KSEKIRKE----LESQLEE----VMAEASKERKLREHS-EVFCKQLENELEALK--VKQG 670

Query:   252 QSKLRMGLEIENHLKKSVRELEKKII-HSDKFISNAIAE-LRLCHSQLRVHVVNSLEEG- 308
                    LE +  L K   ELEKKI+ + ++ +    +  L + + +  VH   S +   
Sbjct:   671 GRAAGATLEHQQELSKMKAELEKKILFYEEELVRREASHVLEVKNVKKEVHDSESHQLAL 730

Query:   309 RSHIKSISDVIEE--KTQHCD-DVIRGQNTGTYQRETKL 344
             +  I  + D +E+  + +H + +   G     Y+RE  +
Sbjct:   731 QKEIMILKDKLEKTKRERHSEMEEAVGSMKEKYERERSM 769

GO:0005083 "small GTPase regulator activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0031532 "actin cytoskeleton reorganization" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016477 "cell migration" evidence=IEA

GO:0031032 "actomyosin structure organization" evidence=IEA

GO:0042641 "actomyosin" evidence=IEA

DICTYBASE|DDB_G0274893 DDB_G0274893 "unknown" [Dictyostelium discoideum (taxid:44689)]

 Score = 141 (54.7 bits), Expect = 3.0e-06, P = 3.0e-06
 Identities = 65/289 (22%), Positives = 130/289 (44%)

Query:    60 LEQEIEILKQKIAACARENSNLQEELSEAY-RIKGQLADLHAAEVIKNMEAEKQVKFFQG 118
             LEQEI+I K+K+    +E +  ++ +++   R++     L  ++  +N E  K ++  + 
Sbjct:   171 LEQEIKINKEKLEKLDKEINEHKDSINQLQERLESTQDQLSKSQQ-ENQEKSKDIEELKS 229

Query:   119 CMAAAFAERDNSVMXXXXXXXXXXLMSQKFNEFQTRLEELSSENIEL-KKQNATLRFDLE 177
              +     E +   +             QKF   Q    +L  +N E+ K     ++   E
Sbjct:   230 QLELNLQEIERLKIEINSE-------KQKFENLQDTYNQLIEKNKEIIKSLEEEVKIKDE 282

Query:   178 KQEELNESFKEVINKFYEIRQ-QSLEVLETSWEDKCACL-LLDSAEMWSFNDTSTSKYIS 235
              Q  LNE  KE   +  EI++ + ++  E + E++   L L  S +    N++  +++  
Sbjct:   283 LQIALNE-LKEKNQEITEIKEKEEIKNQELTKENQELTLELTQSQQQNKDNESKINQHQE 341

Query:   236 ALEDELEKTRSSVENLQSKLRMGLEI-ENHLKKSVRELEKKIIHSDKFISNAIAELRLCH 294
              +E +LE+ + +++N  +K     EI E ++K    EL+ K++  D+ +S   + L L  
Sbjct:   342 TIE-QLEQEKQTLQNELNKFEQDKEILEANIKTLTIELDNKVMEVDE-LSQLRSNLNLEI 399

Query:   295 SQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETK 343
               +R   +  +EE    I+ +   +E+         R Q   T Q+E K
Sbjct:   400 ECVRKSHIKEMEELTLQIQQLQQHLEQDKNDIQQ--REQEISTLQQENK 446

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|F1N1F8 CENPF "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 144 (55.7 bits), Expect = 5.6e-06, P = 5.6e-06
 Identities = 63/325 (19%), Positives = 142/325 (43%)

Query:    14 ALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAA 73
             +L  ++ + EHE+  + K +E   M++   +    +T+    +   L + IE L+ +I A
Sbjct:  2037 SLQTKLSESEHEKLAITKALEAALMEKGEVAVRLSSTQEEVHQ---LRKGIEKLRVRIEA 2093

Query:    74 CARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMX 133
               ++  ++ E+L E+ R    L D      ++ +E E Q+   +        + +N    
Sbjct:  2094 DEKKQLHVSEKLKESERRNDSLQDK-----VETLERELQMA--EENQELVILDAENCKAE 2146

Query:   134 XXXXXXXXXLMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINK- 192
                      LM+++  + +  L  + SE   L KQ    +    + + L  S K ++ + 
Sbjct:  2147 VETLKTQIELMTERLKDLELDLVTIRSEKENLLKQLQEKQGQASELDTLLSSLKNLLEEK 2206

Query:   193 ------FYEIRQQSLEVLETSWEDKCA--CLLLDSAEMWSFNDTSTSKYISALEDELEKT 244
                     E  + ++E+L+T   +       L D  E W   + S    + +   E+++ 
Sbjct:  2207 EREKIQTKEEAKSAVEMLQTQLRELTEEIAALCDDQETWKVEEQS----LDSPAQEVQQL 2262

Query:   245 RSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIA----ELRLCHSQLRVH 300
             R+++E    KL++ L+I+   +  + E  K+  H   F+ + +     EL+L   + + H
Sbjct:  2263 RNNIE----KLKVHLDIDKKKQLQILEKLKESEHQADFLKDTVENLERELKLS-GENQEH 2317

Query:   301 VVNSLEEGRSHIKSISDVIEEKTQH 325
             V    E+ ++ ++++   +E+  Q+
Sbjct:  2318 VTLEAEKSKAEVETLKATVEKMDQN 2342

GO:0051310 "metaphase plate congression" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0045502 "dynein binding" evidence=IEA

GO:0045120 "pronucleus" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0016202 "regulation of striated muscle tissue development" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0000085 "G2 phase of mitotic cell cycle" evidence=IEA

UNIPROTKB|F1NNI6 LOC100858793 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 144 (55.7 bits), Expect = 5.6e-06, P = 5.6e-06
 Identities = 79/339 (23%), Positives = 153/339 (45%)

Query:    15 LMARIQQLEHERDELRKDIEQLCMQQAGPS--YLAVATRMHFQRTAGLEQEIEILKQKIA 72
             L  +IQ L  E  +LR+ +++   +        L V    + +  + L+ ++  L +K  
Sbjct:   480 LQNQIQILSSETSQLRQTMQEKENEYKSEESDILRVQLSENMEIISDLQCQLRNLSEK-- 537

Query:    73 ACARENSNLQE---EL--SEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAER 127
               A+E+S LQ+   EL  SEA ++K Q+ +L   +V  N++ E Q +           E+
Sbjct:   538 -AAQESSILQQKQLELLTSEAEQLKKQVVELEEVKV--NLQKEVQHQ------KDVIVEK 588

Query:   128 DNSVMXXXXXXXXXXLMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFK 187
             D S+            + +   E     EE  +   +L+ Q   L  +L+K +EL +  K
Sbjct:   589 DQSLSESESSFIENKTLLKALKEKAQEDEEKVNLISQLQSQVHVLTQELQKSKELVQE-K 647

Query:   188 EVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSS 247
             E  N F  + Q+ +E  +     +    L  + ++ + N +  S  I  L++ELEK+ ++
Sbjct:   648 E--NAFLSL-QEKIEA-QYELRTELTAALNKNLQLANKNMSVLSNEIEILKEELEKSGAA 703

Query:   248 VENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEE 307
             ++NL  + ++ L+ E+ L++S+ E E K +     +  A  E++    QL   + N ++ 
Sbjct:   704 MKNLTKEFQLELKFES-LEQSLLESENKWVTK---LDRATLEIKNLTEQLSC-LENEMKS 758

Query:   308 GRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDE 346
               S I+S+   ++       D    Q      +  KL+E
Sbjct:   759 KDSKIQSLQKELDHFQLQLTDEKNRQIQFLQDKINKLEE 797

GO:0005794 "Golgi apparatus" evidence=IEA

UNIPROTKB|F1MYN2 CGN "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 138 (53.6 bits), Expect = 8.8e-06, P = 8.8e-06
 Identities = 88/369 (23%), Positives = 159/369 (43%)

Query:    21 QLEHERDELRKDIEQLCM-QQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENS 79
             QL+    +LR+D E+    Q A  +  AV  +   +RTA +E  +   +++     R   
Sbjct:   676 QLQKTLQQLRQDCEEASKAQMAAETEAAVLGQ---RRTA-VETTLRETQEENDEFRRRIL 731

Query:    80 NLQEELSEAYRIK--GQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMXXXXX 137
              L+++L EA  +   G++A+    + ++ +EAEKQ    Q  + AA  E + S+      
Sbjct:   732 GLEQQLKEARGLAEGGEVAEARLRDKVQRLEAEKQR--LQEALNAA-QEEEGSLAAAKRA 788

Query:   138 XXXXXLMSQK-FNEFQTRLEELSSENIELKKQNATLR---FDLEKQEELNESFKEVINKF 193
                    +Q+         + L+    E  KQ   LR    +LE+Q+ L +   + +NK 
Sbjct:   789 LEARLEEAQRGLTRLGQEQQALNRALEEEGKQREVLRRSKAELEEQKRLLDRTVDRLNKE 848

Query:   194 YEI----RQQSLEVLETSWED---KCACLLLDS---AEMWSFNDTSTSKYISALEDELEK 243
              E      +Q+L+ L+   ED   K    + D+   A+ W+     TS  +S L+DE ++
Sbjct:   849 LEQIGDDSKQALQQLQAQLEDYKEKARREVADAQRQAKEWASEAEKTSGGLSRLQDETQR 908

Query:   244 TRSSVENLQSK---LRMGLEI-ENHLKKSVRELE-KKIIHSDKFISNAIAELRLCHSQLR 298
              R +++  Q+     R+  E+    L+   +E E KK    DK  S  +  L    S+L 
Sbjct:   909 LRQALQASQADRDTARLDKELLVQRLQGLEQEAENKKRSQDDK--SRQLKSLEEKVSRLE 966

Query:   299 VHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHI---N 355
                   L+E +S ++ ++D +       D +     T   Q  +   + EC  + +   N
Sbjct:   967 AE----LDEEKSTVELLTDRMNRGRDQVDQL----RTELMQERSARQDLECDKISLERQN 1018

Query:   356 NDADTNLVS 364
              D  + L S
Sbjct:  1019 KDLKSRLAS 1027

GO:0043296 "apical junction complex" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|P11055 MYH3 "Myosin-3" [Homo sapiens (taxid:9606)]

 Score = 140 (54.3 bits), Expect = 9.3e-06, P = 9.3e-06
 Identities = 62/283 (21%), Positives = 122/283 (43%)

Query:    55 QRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVK 114
             QR    E+++E +  K A+  +    LQ E+ +      +   L AA   K    +K + 
Sbjct:  1396 QRLQDSEEQVEAVNAKCASLEKTKQRLQGEVEDLMVDVERANSLAAALDKKQRNFDKVLA 1455

Query:   115 FFQGCMAAAFAERDNSVMXXXXXXXXXXLMSQKFNEFQTRLEELSSENIELKKQNATLRF 174
              ++     + AE + S+            +   + E   +LE +  EN  L+++ A L  
Sbjct:  1456 EWKTKCEESQAELEASLKESRSLSTELFKLKNAYEEALDQLETVKRENKNLEQEIADLTE 1515

Query:   175 DLEKQ----EELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTST 230
              + +      EL +S K++  +  +I Q +LE  E + E + A +L    E+        
Sbjct:  1516 QIAENGKTIHELEKSRKQIELEKADI-QLALEEAEAALEHEEAKILRIQLELTQVKSEID 1574

Query:   231 SKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAEL 290
              K I+  ++E+E+ + + +     ++  L+ E   +     L+KK+   D    N I E+
Sbjct:  1575 RK-IAEKDEEIEQLKRNYQRTVETMQSALDAEVRSRNEAIRLKKKM-EGDL---NEI-EI 1628

Query:   291 RLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQ 333
             +L H+  +        E   H++S+   +++   H DD +RGQ
Sbjct:  1629 QLSHANRQA------AETLKHLRSVQGQLKDTQLHLDDALRGQ 1665

GO:0003779 "actin binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0032982 "myosin filament" evidence=IEA

GO:0030016 "myofibril" evidence=IEA

GO:0000146 "microfilament motor activity" evidence=NAS

GO:0030048 "actin filament-based movement" evidence=NAS

GO:0007517 "muscle organ development" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0030049 "muscle filament sliding" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	376
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.003

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 65/281 (23%), Positives = 119/281 (42%), Gaps = 22/281 (7%)

Query: 2   DENSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMH--FQRTAG 59
                  E E E L +R+++LE E +EL +++E+L  +        +   +    +  A 
Sbjct: 722 KRELAALEEELEQLQSRLEELEEELEELEEELEELQERLE-----ELEEELESLEEALAK 776

Query: 60  LEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGC 119
           L++EIE L++K  A   E   L+EEL EA R    L     +   +    E++++  +  
Sbjct: 777 LKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEE 836

Query: 120 MAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQ 179
           +     + D    E E+ +++ E + ++  E +   EEL  E  EL+++   L  +L + 
Sbjct: 837 IEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELREL 896

Query: 180 EELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALED 239
           E      KE I K    R + LE        K   L ++  E+    +    +Y   LE 
Sbjct: 897 ESELAELKEEIEK-LRERLEELEA-------KLERLEVELPEL---EEELEEEYEDTLET 945

Query: 240 ELEKTRSSVENLQSKLRM----GLEIENHLKKSVRELEKKI 276
           ELE+    +E     L       +E    +++   EL+ + 
Sbjct: 946 ELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQR 986

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 56/277 (20%), Positives = 115/277 (41%), Gaps = 10/277 (3%)

Query: 4   NSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQE 63
             +E E + E L  +I +LE    ELRK++E+L   +     L        ++ + L ++
Sbjct: 678 EIEELEEKIEELEEKIAELEKALAELRKELEEL---EEELEQLRKELEELSRQISALRKD 734

Query: 64  IEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAA 123
           +  L+ ++       + L +EL+E      +L +       +  EAE +++  +  +   
Sbjct: 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQL 794

Query: 124 FAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELN 183
             E        ++ + +  L++++    + RLE L       +++   L   +E+  E  
Sbjct: 795 KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI 854

Query: 184 ESFKEVINKFYEIR---QQSLEVLETSWEDKCACLLLDSAEMWSFNDT--STSKYISALE 238
           ES    I +  E+    +  LE L          L L  +E+   ++         S L 
Sbjct: 855 ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELR 914

Query: 239 DELEKTRSSVENLQSKLRMGLEIE-NHLKKSVRELEK 274
            ELE+ R  +  L+ +L  GLE+  ++L++ + E   
Sbjct: 915 RELEELREKLAQLELRLE-GLEVRIDNLQERLSEEYS 950

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 36/178 (20%), Positives = 74/178 (41%), Gaps = 20/178 (11%)

Query: 1   MDENSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGL 60
           ++   +E+    + L     +L+ E ++LR ++E+          +              
Sbjct: 341 LEREIEEERKRRDKLTEEYAELKEELEDLRAELEE----------VDKEFAETRDELKDY 390

Query: 61  EQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAA-----EVIKNMEAEKQVKF 115
            +++E LK++I    RE   LQEEL    R+  +LADL+AA       I  +E EK+ K 
Sbjct: 391 REKLEKLKREINELKRELDRLQEELQ---RLSEELADLNAAIAGIEAKINELEEEKEDK- 446

Query: 116 FQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLR 173
               +     + +    +  K +++   + ++++  +  L +L  E  E + Q     
Sbjct: 447 -ALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASE 503

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 62/289 (21%), Positives = 117/289 (40%), Gaps = 52/289 (17%)

Query: 3   ENSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQ 62
           E  +E + E E     I++L+ E +ELR+++E+L  +                    LE 
Sbjct: 253 EELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEI----------EELEG 302

Query: 63  EIEILKQKIAACARENSNLQEELSEAY-RIKGQLADLHAAEVIKNMEAEKQVKFFQGCMA 121
           EI +L++++     E   L+E L E   +I+    +L   E +   E E+ +        
Sbjct: 303 EISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLL-EELEQLLA------- 354

Query: 122 AAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEE 181
                        E  +E EE +S    E +   E L  E  EL+ + A +R +LE+ + 
Sbjct: 355 ----------ELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKR 404

Query: 182 LNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDEL 241
             ES +E + +  E  +   E L+    +                       +  L+ EL
Sbjct: 405 EIESLEERLERLSERLEDLKEELKELEAE-----------------------LEELQTEL 441

Query: 242 EKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAEL 290
           E+    +E L+ +L    +    L++ + EL++++   +K +S+  A L
Sbjct: 442 EELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARL 490

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 58/289 (20%), Positives = 111/289 (38%), Gaps = 42/289 (14%)

Query: 1   MDENSKEKENESEALMARIQQLEHERDELRKDIEQL----------CMQQAGPSYLAVAT 50
           ++   +  E +  +L   +++L  E  EL K +E++                   L V  
Sbjct: 235 LERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKE 294

Query: 51  RMHFQRTAGLEQEIEILKQKIAACARENSNLQEEL----SEAYRIKGQLADLHAAEVIKN 106
           ++       LE EI  L++ IA   RE  + +E L    +E  ++  ++ +L      + 
Sbjct: 295 KIG-----ELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEER 349

Query: 107 MEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELK 166
              +K         A    E ++   E E+  ++      +  +++ +LE+L  E  ELK
Sbjct: 350 KRRDK----LTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELK 405

Query: 167 KQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFN 226
           +    L    E+ + L+E   ++      I  +  E LE   EDK       + E+    
Sbjct: 406 R---ELDRLQEELQRLSEELADLNAAIAGIEAKINE-LEEEKEDK-------ALEIK--- 451

Query: 227 DTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKK 275
                K +  L  +L K    + +L+ +      +E  L K  REL + 
Sbjct: 452 -KQEWK-LEQLAADLSKYEQELYDLKEEYD---RVEKELSKLQRELAEA 495

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 50/266 (18%), Positives = 109/266 (40%), Gaps = 21/266 (7%)

Query: 2   DENSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLE 61
               +E E + E L   + +LE E +EL+K++  L  + +    L    ++  +R A LE
Sbjct: 259 TAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISR---LEQQKQILRERLANLE 315

Query: 62  QEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMA 121
           +++E L+ ++     +   L EEL+E      +L +   +   +  E E +++  +  + 
Sbjct: 316 RQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLE 375

Query: 122 AAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEE 181
               + +    +  + + +   ++ +    + RLE L      L+++   L   LE+ E 
Sbjct: 376 ELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE- 434

Query: 182 LNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDEL 241
                KE+  +  E+ ++ LE L+   E     L     E            +   E  L
Sbjct: 435 ----LKELQAELEELEEE-LEELQEELERLEEALEELREE------------LEEAEQAL 477

Query: 242 EKTRSSVENLQSKLRMGLEIENHLKK 267
           +     +  LQ++L     ++ +L+ 
Sbjct: 478 DAAERELAQLQARLDSLERLQENLEG 503

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	376
PRK09039	343	hypothetical protein; Validated	97.74
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.42
PHA02562	562	46 endonuclease subunit; Provisional	97.05
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	96.72
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	95.98
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	95.95
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	95.89
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	95.76
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	95.5
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	95.47
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	95.17
PRK02224	880	chromosome segregation protein; Provisional	95.09
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	94.74
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	94.6
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	94.56
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	93.95
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	93.95
PRK09039	343	hypothetical protein; Validated	93.92
PRK10884	206	SH3 domain-containing protein; Provisional	93.76
PRK03918	880	chromosome segregation protein; Provisional	93.62
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	93.38
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	93.29
PRK02224	880	chromosome segregation protein; Provisional	93.16
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	92.92
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	92.89
PRK04863	1486	mukB cell division protein MukB; Provisional	92.77
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	92.73
PRK11637	428	AmiB activator; Provisional	91.44
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	91.43
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	90.24
PF04912	388	Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamit	89.93
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	89.46
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	89.29
PRK03918	880	chromosome segregation protein; Provisional	88.87
PF08232	134	Striatin: Striatin family; InterPro: IPR013258 Thi	88.47
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	88.46
PRK11637	428	AmiB activator; Provisional	87.99
PRK10929	1109	putative mechanosensitive channel protein; Provisi	87.2
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	86.52
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	86.49
KOG2991	330	consensus Splicing regulator [RNA processing and m	85.13
PRK04778	569	septation ring formation regulator EzrA; Provision	85.04
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	83.16
PF14662	193	CCDC155: Coiled-coil region of CCDC155	82.31
PRK10884	206	SH3 domain-containing protein; Provisional	81.79
KOG0979	1072	consensus Structural maintenance of chromosome pro	81.68
PF06657	79	Cep57_MT_bd: Centrosome microtubule-binding domain	81.39
PF08172	248	CASP_C: CASP C terminal; InterPro: IPR012955 This	81.36
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	81.14
PF01920	106	Prefoldin_2: Prefoldin subunit; InterPro: IPR00277	80.76
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	80.25
PF10458	66	Val_tRNA-synt_C: Valyl tRNA synthetase tRNA bindin	80.14

>PRK09039 hypothetical protein; Validated

Probab=97.74  E-value=0.0061  Score=59.09  Aligned_cols=160  Identities=22%  Similarity=0.292  Sum_probs=93.9

Q ss_pred             CchHHHhhHH-----------------HHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHh
Q 017151           43 PSYLAVATRM-----------------HFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIK  105 (376)
Q Consensus        43 pgyl~vATRM-----------------~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~K  105 (376)
                      ||||++-|-+                 +++-..++++++..|+.+++.                     |+++-+-+.+.
T Consensus        17 pg~vd~~~~ll~~~~f~l~~f~~~q~fLs~~i~~~~~eL~~L~~qIa~---------------------L~e~L~le~~~   75 (343)
T PRK09039         17 PGFVDALSTLLLVIMFLLTVFVVAQFFLSREISGKDSALDRLNSQIAE---------------------LADLLSLERQG   75 (343)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---------------------HHHHHHHHHHH
Confidence            9999877654                 456777777777777777655                     55555555556


Q ss_pred             hHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHh
Q 017151          106 NMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNES  185 (376)
Q Consensus       106 N~e~EkqVkFfQs~vA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~  185 (376)
                      +..++..+.=.+.....|-++|+.  .|  ..-.   .......+.+.|+..++..+..++......+.++..+..|.+.
T Consensus        76 ~~~l~~~l~~l~~~l~~a~~~r~~--Le--~~~~---~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~a  148 (343)
T PRK09039         76 NQDLQDSVANLRASLSAAEAERSR--LQ--ALLA---ELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAA  148 (343)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHH--HH--HHHh---hhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            666665555555555555454431  11  1000   0112234566777777777777777777777777777777764


Q ss_pred             HHHHHHHHHHHhhhhhhhhcccccchhhhhcccccccccccCcchhHhHHHHHHHHHHHHhhHHHHhhhh-hhhHHHHHH
Q 017151          186 FKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKL-RMGLEIENH  264 (376)
Q Consensus       186 ~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQskL-R~glEIEnH  264 (376)
                      +.+-                                            +++||.+++.........|.++ ..|-+|+++
T Consensus       149 Lr~Q--------------------------------------------la~le~~L~~ae~~~~~~~~~i~~L~~~L~~a  184 (343)
T PRK09039        149 LRRQ--------------------------------------------LAALEAALDASEKRDRESQAKIADLGRRLNVA  184 (343)
T ss_pred             HHHH--------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3332                                            5555555555555554444443 235556666


Q ss_pred             hHHhHHHHHH
Q 017151          265 LKKSVRELEK  274 (376)
Q Consensus       265 Lkk~~r~LEk  274 (376)
                      |.+++..|+.
T Consensus       185 ~~~~~~~l~~  194 (343)
T PRK09039        185 LAQRVQELNR  194 (343)
T ss_pred             HHHHHHHHHH
Confidence            6666666654

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.42  E-value=0.1  Score=48.15  Aligned_cols=117  Identities=17%  Similarity=0.238  Sum_probs=89.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH
Q 017151           12 SEALMARIQQLEHERDELRKDIEQLCMQQAG-PSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYR   90 (376)
Q Consensus        12 ~esl~aRI~qLEhERDELrKDIEqLCMQQaG-pgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYR   90 (376)
                      -++.+.||..||.+...|..+|..+---.+. |+-+          -...+.+|..|+.++..++.++-.|+-++..+..
T Consensus        13 la~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~----------~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~   82 (312)
T PF00038_consen   13 LASYIEKVRFLEQENKRLESEIEELREKKGEEVSRI----------KEMYEEELRELRRQIDDLSKEKARLELEIDNLKE   82 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH---------HHH----------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCccc----------ccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHH
Confidence            4677899999999999999999999876422 3211          2456888999999999999999999999998887


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhH
Q 017151           91 IKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAK  138 (376)
Q Consensus        91 iK~qLadLh~ae~~KN~e~EkqVkFfQs~vA~AFAERD~slmEaEKaK  138 (376)
                      --..+-.-|..+......+|.++.=+..-+-.+.+.|...=-+++-.+
T Consensus        83 e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~  130 (312)
T PF00038_consen   83 ELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLK  130 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHH
Confidence            777776678888999999999998888888777777766555555554

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.05  E-value=0.37  Score=47.42  Aligned_cols=75  Identities=15%  Similarity=0.158  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcC-CchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Q 017151           15 LMARIQQLEHERDELRKDIEQLCMQQAG-PSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAY   89 (376)
Q Consensus        15 l~aRI~qLEhERDELrKDIEqLCMQQaG-pgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAY   89 (376)
                      +..++.+++.+-+.|+..|+.+=-+.++ +.++.....-....++.++.+++.+..+....-.+-.+|+++|.+.+
T Consensus       172 ~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~  247 (562)
T PHA02562        172 NKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLV  247 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4556666666666666666666444443 45555555555667777888888888777777777777777777664

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=96.72  E-value=0.97  Score=47.09  Aligned_cols=17  Identities=6%  Similarity=0.198  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHHHhhHHH
Q 017151          234 ISALEDELEKTRSSVEN  250 (376)
Q Consensus       234 isaLEee~e~lr~si~~  250 (376)
                      |..|+.+++.+.+.|+.
T Consensus       967 ~~~l~~~i~~lg~aiee  983 (1179)
T TIGR02168       967 EEEARRRLKRLENKIKE  983 (1179)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44444444444444433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=95.98  E-value=3.5  Score=45.80  Aligned_cols=78  Identities=15%  Similarity=0.242  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHhhHHHHhh-hhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhh
Q 017151          236 ALEDELEKTRSSVENLQS-KLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKS  314 (376)
Q Consensus       236 aLEee~e~lr~si~~LQs-kLR~glEIEnHLkk~~r~LEk~q~~~d~~i~ngis~L~~~h~~~R~~Im~lL~e~~s~iks  314 (376)
                      .++.+++.+...+..|-. |++ .+|-=..++++...|..+..-.++=...=...+..+...-|...|.....=..+++.
T Consensus       946 ~~~~~i~~le~~i~~lg~VN~~-Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~In~~F~~ 1024 (1163)
T COG1196         946 ELEREIERLEEEIEALGPVNLR-AIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINENFSE 1024 (1163)
T ss_pred             HHHHHHHHHHHHHHhccCCChh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555444421 222 233333455555555555544444443333334444444444444443333333333

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=95.95  E-value=5.4  Score=47.71  Aligned_cols=182  Identities=22%  Similarity=0.261  Sum_probs=113.6

Q ss_pred             hhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHH-HH
Q 017151           57 TAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVME-AE  135 (376)
Q Consensus        57 tA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~vA~AFAERD~slmE-aE  135 (376)
                      -.+|+.+|+.++.++..-+|.+++|...+..+-+=+..|-+.+--+...-.++++++.==-+-++++-+.=+..+.. .|
T Consensus      1296 ~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~e 1375 (1930)
T KOG0161|consen 1296 KQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLE 1375 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35678889999999999999999999998888777777776666666666677777665555555554444444443 34


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchh---
Q 017151          136 KAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKC---  212 (376)
Q Consensus       136 KaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc---  212 (376)
                      .+.|.-...-+.+.+.+++++.+...+.+..+..-.||.++..+.--.+....++. |.+..+...+-.-..|..++   
T Consensus      1376 elee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~-~le~k~k~f~k~l~e~k~~~e~l 1454 (1930)
T KOG0161|consen 1376 ELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVA-ALEKKQKRFEKLLAEWKKKLEKL 1454 (1930)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444455567788888899988888888877777777666554433332222111 22333333333333454444   


Q ss_pred             hhhcccccccccccCcchhHhHHHHHH
Q 017151          213 ACLLLDSAEMWSFNDTSTSKYISALED  239 (376)
Q Consensus       213 ~~Ll~ds~~~WSfn~tStskyisaLEe  239 (376)
                      +..++.....|.=-+|+.-++--+||+
T Consensus      1455 ~~Eld~aq~e~r~~~tel~kl~~~lee 1481 (1930)
T KOG0161|consen 1455 QAELDAAQRELRQLSTELQKLKNALEE 1481 (1930)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            445555666666666665555555444

>TIGR00606 rad50 rad50

Probab=95.89  E-value=4.1  Score=45.82  Aligned_cols=290  Identities=12%  Similarity=0.085  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH--
Q 017151           16 MARIQQLEHERDELRKDIEQL---CMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYR--   90 (376)
Q Consensus        16 ~aRI~qLEhERDELrKDIEqL---CMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYR--   90 (376)
                      .+.+..+..+++.+.+.|.+|   .+.- |.-=+.++.++-  +-..|+-+|+.|+..+..+..+-..+.+++...-.  
T Consensus       842 ~~~~e~l~~e~e~~~~eI~~Lq~ki~el-~~~klkl~~~l~--~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~  918 (1311)
T TIGR00606       842 VSKIELNRKLIQDQQEQIQHLKSKTNEL-KSEKLQIGTNLQ--RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFL  918 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence            333444455555556666666   5542 222233333222  44556666666666666665555555554443322  


Q ss_pred             --HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHH---------HHHhhhhhh--hHHHHH----hHHHHHHHHHHHHHHHH
Q 017151           91 --IKGQLADLHAAEVIKNMEAEKQVKFFQGCMA---------AAFAERDNS--VMEAEK----AKEKEELMSQKFNEFQT  153 (376)
Q Consensus        91 --iK~qLadLh~ae~~KN~e~EkqVkFfQs~vA---------~AFAERD~s--lmEaEK----aKE~Ee~m~qk~~e~e~  153 (376)
                        ..+.+.++-...-.+..++...+.=|+..+-         ..|..+|..  |-+++.    ....-+.+-+....+..
T Consensus       919 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~~qL~~~e~el~~~~~~ie~le~e~~~l~~  998 (1311)
T TIGR00606       919 EKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINE  998 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              2233333333333344445555554444432         223333321  111111    11111333344555555


Q ss_pred             HHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhcccccccccccCcchhHh
Q 017151          154 RLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKY  233 (376)
Q Consensus       154 R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSfn~tStsky  233 (376)
                      .+..+...+.++......++..+..+..+++.. .+     +....+++.....- +. .-+-.+ ...|.=--.+.+.=
T Consensus       999 ~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~-el-----~~eI~~l~~~~~~~-~~-~~~~~e-~~~l~~~~~~l~~~ 1069 (1311)
T TIGR00606       999 DMRLMRQDIDTQKIQERWLQDNLTLRKRENELK-EV-----EEELKQHLKEMGQM-QV-LQMKQE-HQKLEENIDLIKRN 1069 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----HHHHHHHHHHHhhc-cH-HHHHHH-HHHHHHHHHHHHHH
Confidence            555555666666666666655555553222210 00     01111111100000 00 000000 00010000122223


Q ss_pred             HHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhh
Q 017151          234 ISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIK  313 (376)
Q Consensus       234 isaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~LEk~q~~~d~~i~ngis~L~~~h~~~R~~Im~lL~e~~s~ik  313 (376)
                      .+++..++..+.+.|..|+..|.=      =--+++..=-++..+==+....++.+|.+||...=.-||+.=..-=..|-
T Consensus      1070 ~a~l~g~~k~le~qi~~l~~eL~e------~~yk~a~~ryrka~i~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~n 1143 (1311)
T TIGR00606      1070 HVLALGRQKGYEKEIKHFKKELRE------PQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKFHSMKMEEIN 1143 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555556666655555421      11223333333333444556677888888887777777776555555566


Q ss_pred             hhHHHHHhhh
Q 017151          314 SISDVIEEKT  323 (376)
Q Consensus       314 s~v~~i~ekl  323 (376)
                      .||+.+=.++
T Consensus      1144 ~~~~~~w~~~ 1153 (1311)
T TIGR00606      1144 KIIRDLWRST 1153 (1311)
T ss_pred             HHHHHHHHHH
Confidence            6666655554

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=95.76  E-value=3.3  Score=43.71  Aligned_cols=30  Identities=17%  Similarity=0.335  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHhhHHHHhh-hhhhhHHHHH
Q 017151          234 ISALEDELEKTRSSVENLQS-KLRMGLEIEN  263 (376)
Q Consensus       234 isaLEee~e~lr~si~~LQs-kLR~glEIEn  263 (376)
                      ++.++.++..+++.++++-+ |+..--+.+.
T Consensus       953 ~~~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~  983 (1164)
T TIGR02169       953 LEDVQAELQRVEEEIRALEPVNMLAIQEYEE  983 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence            45788888888888887765 4444344443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=95.50  E-value=3.9  Score=42.79  Aligned_cols=25  Identities=28%  Similarity=0.353  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 017151           13 EALMARIQQLEHERDELRKDIEQLC   37 (376)
Q Consensus        13 esl~aRI~qLEhERDELrKDIEqLC   37 (376)
                      ..+...+..|+.+.+++++.++.+-
T Consensus       673 ~~l~~e~~~l~~~~~~l~~~l~~~~  697 (1179)
T TIGR02168       673 LERRREIEELEEKIEELEEKIAELE  697 (1179)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555555443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=95.47  E-value=5.1  Score=43.93  Aligned_cols=176  Identities=21%  Similarity=0.261  Sum_probs=107.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcCCc-hHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 017151           11 ESEALMARIQQLEHERDELRKDIEQLCM--QQAGPS-YLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSE   87 (376)
Q Consensus        11 ~~esl~aRI~qLEhERDELrKDIEqLCM--QQaGpg-yl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsE   87 (376)
                      ..+.+..||.-++.++|...-.|+.|=-  |..||+ +-...+.-...|.++++..+..|+..|.---.++.-+.++|-.
T Consensus       136 ~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~  215 (775)
T PF10174_consen  136 TLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERKEKEHMEAREQLHR  215 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            4677888899999999999999988754  777844 5566666677799999999988888887777777666666666


Q ss_pred             HHHHHHH------HHHHHH------HHHHhhH-HHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHH---------
Q 017151           88 AYRIKGQ------LADLHA------AEVIKNM-EAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMS---------  145 (376)
Q Consensus        88 AYRiK~q------LadLh~------ae~~KN~-e~EkqVkFfQs~vA~AFAERD~slmEaEKaKE~Ee~m~---------  145 (376)
                      .|....-      +-.+.-      +++.++. .+|-++.-.++.++.+=++||--.-+.|--+-.-..|-         
T Consensus       216 ~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~e  295 (775)
T PF10174_consen  216 RLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLE  295 (775)
T ss_pred             HhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            5543211      111111      3333332 25677777777777777777766333332222222222         


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhH
Q 017151          146 -----QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESF  186 (376)
Q Consensus       146 -----qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~  186 (376)
                           +.+..++.|++.+.+...+.+.=-+.|+.++.....+.+.+
T Consensus       296 L~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~L  341 (775)
T PF10174_consen  296 LSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEML  341 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 23344445555555555555555555555555555555533

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=95.17  E-value=3.7  Score=44.94  Aligned_cols=117  Identities=27%  Similarity=0.405  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHH---HhhhhhHH----HHHHHHHHH-------HHhhhhhcc
Q 017151           15 LMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHF---QRTAGLEQ----EIEILKQKI-------AACARENSN   80 (376)
Q Consensus        15 l~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~---QRtA~LEQ----eIE~Lkkkl-------~~c~rEn~n   80 (376)
                      |.+++..|+.|.|-|++++|-. +.-.|+.--++-| .|+   -|..++..    ++..++.++       ...-.+-++
T Consensus         1 Lq~ql~~~q~E~e~L~~ele~~-~~~l~~~~~~i~~-fwspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~   78 (775)
T PF10174_consen    1 LQAQLERLQRENERLRRELERK-QSKLGSSMNSIKT-FWSPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQA   78 (775)
T ss_pred             CccHHHHHHHHHHHHHHHHHHH-HhHHHHHHHhHhc-ccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHH
Confidence            3468889999999999999987 4444444444333 222   22233322    233444444       444445567


Q ss_pred             hHHHHHHH----HHHHHHHHHHHH-HHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHH
Q 017151           81 LQEELSEA----YRIKGQLADLHA-AEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEK  140 (376)
Q Consensus        81 LQEELsEA----YRiK~qLadLh~-ae~~KN~e~EkqVkFfQs~vA~AFAERD~slmEaEKaKE~  140 (376)
                      ||+|| .+    ||+..++-.-.+ .+-...  +++    =+|-+.+..||||....|.+.....
T Consensus        79 LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~--ld~----~~~q~~rl~~E~er~~~El~~lr~~  136 (775)
T PF10174_consen   79 LQEEL-RAQRELNRLQQELEKAQYEFESLQE--LDK----AQEQFERLQAERERLQRELERLRKT  136 (775)
T ss_pred             HHHHH-HHhhHHHHHHHHhhhcccccchhhh--hhh----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78888 55    555555443311 111111  222    3677888899999999998887733

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PRK02224 chromosome segregation protein; Provisional

Probab=95.09  E-value=5.4  Score=42.05  Aligned_cols=30  Identities=23%  Similarity=0.337  Sum_probs=18.7

Q ss_pred             hHHHHHHHHHHHHhhHHHHhhhhhhhHHHH
Q 017151          233 YISALEDELEKTRSSVENLQSKLRMGLEIE  262 (376)
Q Consensus       233 yisaLEee~e~lr~si~~LQskLR~glEIE  262 (376)
                      -+..|+.+++.++..++.+.+.+...-+++
T Consensus       483 ~~~~le~~l~~~~~~~e~l~~~~~~~~~l~  512 (880)
T PRK02224        483 ELEDLEEEVEEVEERLERAEDLVEAEDRIE  512 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666677777776666666655544444

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=94.74  E-value=0.96  Score=39.49  Aligned_cols=125  Identities=26%  Similarity=0.343  Sum_probs=89.9

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccch
Q 017151          132 MEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDK  211 (376)
Q Consensus       132 mEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~K  211 (376)
                      +|++-|-++-+..-+++.+++.|....+..+.....-|..|..++..+.++......-+.                    
T Consensus         7 ~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~le--------------------   66 (143)
T PF12718_consen    7 LEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLE--------------------   66 (143)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence            456666666677778899999999988888888888888888888888777764333322                    


Q ss_pred             hhhhcccccccccccCcchhHhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHH
Q 017151          212 CACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFI  283 (376)
Q Consensus       212 c~~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~LEk~q~~~d~~i  283 (376)
                            ++...-+=++ +..+-|.-||++++.....+.-..-|||=.=-==.|+-|+|..||.+..-|..=+
T Consensus        67 ------e~~~~~~~~E-~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~  131 (143)
T PF12718_consen   67 ------ESEKRKSNAE-QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKY  131 (143)
T ss_pred             ------hHHHHHHhHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHH
Confidence                  1110000001 5788999999999999999988888888332223499999999999887776544

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.60  E-value=0.48  Score=42.26  Aligned_cols=42  Identities=38%  Similarity=0.366  Sum_probs=2.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHH
Q 017151           80 NLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMA  121 (376)
Q Consensus        80 nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~vA  121 (376)
                      .||+||+++||.+++++..-...-.++.++++...=-+..++
T Consensus        78 ~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~  119 (194)
T PF08614_consen   78 KLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLA  119 (194)
T ss_dssp             ------------------------------------HHHHHH
T ss_pred             cccccccccccccccccccccccccccchhhhhHHHHHHHHH
Confidence            489999999999999997655555555555555444333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=94.56  E-value=9.6  Score=42.48  Aligned_cols=10  Identities=0%  Similarity=0.155  Sum_probs=4.3

Q ss_pred             ccccccCCCC
Q 017151          351 DVHINNDADT  360 (376)
Q Consensus       351 DvHvs~d~~~  360 (376)
                      .+|+.|..++
T Consensus      1051 ei~a~ppgK~ 1060 (1163)
T COG1196        1051 EISARPPGKK 1060 (1163)
T ss_pred             EEEEECCCCC
Confidence            3444444443

>TIGR00606 rad50 rad50

Probab=93.95  E-value=14  Score=41.83  Aligned_cols=46  Identities=15%  Similarity=0.177  Sum_probs=27.0

Q ss_pred             HHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 017151           53 HFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL   98 (376)
Q Consensus        53 ~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadL   98 (376)
                      .-.+.+.++..++.++.....|..+-..+++.+.+.+.+...+..+
T Consensus       222 ir~~l~~~q~kie~~~~~~~~le~ei~~l~~~~~~l~~~~~~~~~l  267 (1311)
T TIGR00606       222 IRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKL  267 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345555566666666666666666666666666666555555444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=93.95  E-value=19  Score=43.43  Aligned_cols=149  Identities=22%  Similarity=0.268  Sum_probs=109.4

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHhhhhHHHHHhhh
Q 017151           51 RMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLH---AAEVIKNMEAEKQVKFFQGCMAAAFAER  127 (376)
Q Consensus        51 RM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh---~ae~~KN~e~EkqVkFfQs~vA~AFAER  127 (376)
                      +.--+|.++|+.|++.|+.++++..|.+.++..||.|+   ...+..++   .+-.+...++|..|.-+|+-++.+..+=
T Consensus      1663 ~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~---~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~ 1739 (1930)
T KOG0161|consen 1663 AEAERRLAALQAELEELREKLEALERARRQAELELEEL---AERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSEL 1739 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34457999999999999999999999999999999875   56777777   4678889999999999999998877665


Q ss_pred             hhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhH-hHHHHHHHHHHHhhhhhhh
Q 017151          128 DNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE-SFKEVINKFYEIRQQSLEV  203 (376)
Q Consensus       128 D~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e-~~~kVi~KFyeiR~~~~e~  203 (376)
                      -.+.=.+-||--.-.-|..+++.=++..--+++.-....+.|.+||..|.+++.-+- .+.+.|.| ++-|-+++|.
T Consensus      1740 ~~~~Er~kka~~~a~~~~~el~~Eq~~~~~le~~k~~LE~~~kdLq~rL~e~E~~a~~~~k~~i~~-Learir~LE~ 1815 (1930)
T KOG0161|consen 1740 RAAEERAKKAQADAAKLAEELRKEQETSQKLERLKKSLERQVKDLQLRLDEAEQAALKGGKKQIAK-LEARIRELES 1815 (1930)
T ss_pred             HhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHH-HHHHHHHHHH
Confidence            444444444444444455666666666666666667777788888888877776543 34455664 4556566654

>PRK09039 hypothetical protein; Validated

Probab=93.92  E-value=6.9  Score=38.38  Aligned_cols=60  Identities=25%  Similarity=0.296  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHH
Q 017151           15 LMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEE   84 (376)
Q Consensus        15 l~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEE   84 (376)
                      |...|..++.|-++|..-|-.          ++..-.|=-+|++.|+++|..++.++....+.+.-|+.-
T Consensus        44 Ls~~i~~~~~eL~~L~~qIa~----------L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~  103 (343)
T PRK09039         44 LSREISGKDSALDRLNSQIAE----------LADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQAL  103 (343)
T ss_pred             HHHHHhhHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566788888899999988876          777788888999999999999999988776666544443

>PRK10884 SH3 domain-containing protein; Provisional

Probab=93.76  E-value=1.2  Score=41.30  Aligned_cols=72  Identities=21%  Similarity=0.296  Sum_probs=57.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH
Q 017151           11 ESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYR   90 (376)
Q Consensus        11 ~~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYR   90 (376)
                      ...++..|+.+||.|-.+|+.....+=-+             +.+|++.|++.+....+.......+|..|.++|..   
T Consensus        87 ~~p~~~~rlp~le~el~~l~~~l~~~~~~-------------~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~---  150 (206)
T PRK10884         87 TTPSLRTRVPDLENQVKTLTDKLNNIDNT-------------WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIV---  150 (206)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHhH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            34567788889999988888877774322             67999999999999999999999999999999987   


Q ss_pred             HHHHHHHH
Q 017151           91 IKGQLADL   98 (376)
Q Consensus        91 iK~qLadL   98 (376)
                      .+..+..|
T Consensus       151 ~~~~~~~l  158 (206)
T PRK10884        151 AQKKVDAA  158 (206)
T ss_pred             HHHHHHHH
Confidence            35555544

>PRK03918 chromosome segregation protein; Provisional

Probab=93.62  E-value=11  Score=39.58  Aligned_cols=30  Identities=17%  Similarity=0.250  Sum_probs=14.6

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017151          133 EAEKAKEKEELMSQKFNEFQTRLEELSSEN  162 (376)
Q Consensus       133 EaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~  162 (376)
                      +.+.+..+-+...+++.+.+..+.+++..+
T Consensus       606 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~i  635 (880)
T PRK03918        606 ELKDAEKELEREEKELKKLEEELDKAFEEL  635 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444445444444455555555544444444

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=93.38  E-value=7.9  Score=41.33  Aligned_cols=84  Identities=23%  Similarity=0.297  Sum_probs=51.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH
Q 017151           11 ESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYR   90 (376)
Q Consensus        11 ~~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYR   90 (376)
                      ..+..+.||+.||+.--+|+.-+...= ....|.-.+..-.=+-.++..|.++++.|..++.+-+++|..|-.-..   .
T Consensus        44 Ek~~~~~~V~eLE~sL~eLk~q~~~~~-~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~---E  119 (617)
T PF15070_consen   44 EKEHDISRVQELERSLSELKNQMAEPP-PPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQ---E  119 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccC-CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence            356677888888887777765443311 222222111111123446777999999999999999999987733222   2


Q ss_pred             HHHHHHHH
Q 017151           91 IKGQLADL   98 (376)
Q Consensus        91 iK~qLadL   98 (376)
                      -+..|++|
T Consensus       120 qEerL~EL  127 (617)
T PF15070_consen  120 QEERLAEL  127 (617)
T ss_pred             HHHHHHHH
Confidence            35566655

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=93.29  E-value=2.6  Score=36.46  Aligned_cols=100  Identities=23%  Similarity=0.290  Sum_probs=71.7

Q ss_pred             CchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHH
Q 017151           43 PSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAA  122 (376)
Q Consensus        43 pgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~vA~  122 (376)
                      ...+....||.++ ...+|-|+-.||.+++...++...|.+|+.....--..+.    +.......+++           
T Consensus        12 ~~~~~~ve~L~s~-lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~----~~~~~~~~L~~-----------   75 (120)
T PF12325_consen   12 GPSVQLVERLQSQ-LRRLEGELASLQEELARLEAERDELREEIVKLMEENEELR----ALKKEVEELEQ-----------   75 (120)
T ss_pred             CchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH-----------
Confidence            3344566676654 6778999999999999999999999999988766544442    22333334443           


Q ss_pred             HHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017151          123 AFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQ  168 (376)
Q Consensus       123 AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~  168 (376)
                                +.+....+-.++++-+-+-.++++||+.++.+.|.+
T Consensus        76 ----------el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~m  111 (120)
T PF12325_consen   76 ----------ELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEM  111 (120)
T ss_pred             ----------HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence                      334455777888888888888999999999888854

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PRK02224 chromosome segregation protein; Provisional

Probab=93.16  E-value=13  Score=39.23  Aligned_cols=35  Identities=26%  Similarity=0.603  Sum_probs=24.8

Q ss_pred             chhHhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhH
Q 017151          229 STSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLK  266 (376)
Q Consensus       229 StskyisaLEee~e~lr~si~~LQskLR~glEIEnHLk  266 (376)
                      .....+..+++.++.++..++.|...+.   .++..+.
T Consensus       657 ~~~~~~~~l~~~l~~~~~~~~~l~~~i~---~~~~~~e  691 (880)
T PRK02224        657 RAEEYLEQVEEKLDELREERDDLQAEIG---AVENELE  691 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence            3667788888888888888888887765   3444443

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=92.92  E-value=16  Score=39.43  Aligned_cols=174  Identities=25%  Similarity=0.331  Sum_probs=116.5

Q ss_pred             hHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhh
Q 017151           50 TRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDN  129 (376)
Q Consensus        50 TRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~vA~AFAERD~  129 (376)
                      +-|+.+=-..|++.-...-.++++|...|.+|.|-++++--..+..+-|    ..+-..+..+|.=||..|-+       
T Consensus       216 ~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~esl----re~~~~L~~D~nK~~~y~~~-------  284 (581)
T KOG0995|consen  216 SELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESL----REKKARLQDDVNKFQAYVSQ-------  284 (581)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHH----HHHHHHHHhHHHHHHHHHHH-------
Confidence            4455566667888777788999999999999999999888887777665    23334588899999988765       


Q ss_pred             hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccc
Q 017151          130 SVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWE  209 (376)
Q Consensus       130 slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~  209 (376)
                        |+     -+-..|-++++...+-+++-++.++..+..|+.|+..++.+                         ++|..
T Consensus       285 --~~-----~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q-------------------------~iS~~  332 (581)
T KOG0995|consen  285 --MK-----SKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ-------------------------GISGE  332 (581)
T ss_pred             --HH-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------------------CCCHH
Confidence              33     45566888888888888888888888888888777655433                         22211


Q ss_pred             chhhhhcccccccccccCcchhHhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHH
Q 017151          210 DKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISN  285 (376)
Q Consensus       210 ~Kc~~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~LEk~q~~~d~~i~n  285 (376)
                      +==-                -.-=--.|..++.++...+|.|+.++   ++.+--.+....++|++=+-+++.+++
T Consensus       333 dve~----------------mn~Er~~l~r~l~~i~~~~d~l~k~v---w~~~l~~~~~f~~le~~~~~~~~l~~~  389 (581)
T KOG0995|consen  333 DVER----------------MNLERNKLKRELNKIQSELDRLSKEV---WELKLEIEDFFKELEKKFIDLNSLIRR  389 (581)
T ss_pred             HHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1000                00001245666666666666666543   344444455666777777777776665

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=92.89  E-value=15  Score=39.13  Aligned_cols=88  Identities=16%  Similarity=0.244  Sum_probs=57.2

Q ss_pred             HHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhHHH
Q 017151          239 DELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDV  318 (376)
Q Consensus       239 ee~e~lr~si~~LQskLR~glEIEnHLkk~~r~LEk~q~~~d~~i~ngis~L~~~h~~~R~~Im~lL~e~~s~iks~v~~  318 (376)
                      +++..+|.++..+...+|-==|.=+-|++.+..|-|.  ..-...-..|-++-+---+|+.+|-+||.+-+ .|..-||.
T Consensus       447 ~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~--~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr-~lQkeiN~  523 (594)
T PF05667_consen  447 QEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD--VNRSAYTRRILEIVKNIRKQKEEIEKILSDTR-ELQKEINS  523 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            4566667777666666665544444444444333333  33344445666777777789999999999876 46677899


Q ss_pred             HHhhhhccccc
Q 017151          319 IEEKTQHCDDV  329 (376)
Q Consensus       319 i~ekl~~~~n~  329 (376)
                      +..|+.-.+.+
T Consensus       524 l~gkL~RtF~v  534 (594)
T PF05667_consen  524 LTGKLDRTFTV  534 (594)
T ss_pred             HHHHHHhHHHH
Confidence            99999444455

>PRK04863 mukB cell division protein MukB; Provisional

Probab=92.77  E-value=25  Score=41.30  Aligned_cols=45  Identities=22%  Similarity=0.366  Sum_probs=31.6

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 017151           51 RMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL   98 (376)
Q Consensus        51 RM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadL   98 (376)
                      |.++.-+++..+.....+++|...-..-..+.+++.   -|+.++.+|
T Consensus       282 R~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~---ELe~rL~kL  326 (1486)
T PRK04863        282 RVHLEEALELRRELYTSRRQLAAEQYRLVEMARELA---ELNEAESDL  326 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence            677888888888888888877777666666666664   355666655

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=92.73  E-value=24  Score=41.11  Aligned_cols=15  Identities=20%  Similarity=0.195  Sum_probs=8.4

Q ss_pred             HHHHHHHhhhhccch
Q 017151          297 LRVHVVNSLEEGRSH  311 (376)
Q Consensus       297 ~R~~Im~lL~e~~s~  311 (376)
                      +-.+|.+-|.++.+.
T Consensus       701 ~~~e~~~~lseek~a  715 (1317)
T KOG0612|consen  701 QMKEIESKLSEEKSA  715 (1317)
T ss_pred             HHHHHHHHhcccccH
Confidence            334566666666554

>PRK11637 AmiB activator; Provisional

Probab=91.44  E-value=16  Score=36.15  Aligned_cols=35  Identities=14%  Similarity=0.182  Sum_probs=20.9

Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHH
Q 017151           52 MHFQRTAGLEQEIEILKQKIAACARENSNLQEELS   86 (376)
Q Consensus        52 M~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELs   86 (376)
                      +++.-++.++++++.+++++...-.+-..++.++.
T Consensus        37 ~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~~~   71 (428)
T PRK11637         37 AFSAHASDNRDQLKSIQQDIAAKEKSVRQQQQQRA   71 (428)
T ss_pred             hhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444566777788888777655554444444444

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=91.43  E-value=22  Score=37.78  Aligned_cols=33  Identities=30%  Similarity=0.455  Sum_probs=18.6

Q ss_pred             hhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHH
Q 017151           56 RTAGLEQEIEILKQKIAACARENSNLQEELSEA   88 (376)
Q Consensus        56 RtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEA   88 (376)
                      +...+..+++.+..++.....+-..+.+++.+.
T Consensus       231 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~  263 (1164)
T TIGR02169       231 EKEALERQKEAIERQLASLEEELEKLTEEISEL  263 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555556666666666665555555555543

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=90.24  E-value=29  Score=37.21  Aligned_cols=68  Identities=28%  Similarity=0.410  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHH
Q 017151           15 LMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQ   94 (376)
Q Consensus        15 l~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~q   94 (376)
                      |+.=|+||+-|||+..--+             .--..+|-||.+.|-.++.+|++....-.+.=..|...|++   +|.|
T Consensus         2 l~e~l~qlq~Erd~ya~~l-------------k~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~e---Lk~q   65 (617)
T PF15070_consen    2 LMESLKQLQAERDQYAQQL-------------KEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSE---LKNQ   65 (617)
T ss_pred             hHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHh
Confidence            4566899999999954322             22345799999999999999999887777777778878877   6777


Q ss_pred             HHHH
Q 017151           95 LADL   98 (376)
Q Consensus        95 LadL   98 (376)
                      ++..
T Consensus        66 ~~~~   69 (617)
T PF15070_consen   66 MAEP   69 (617)
T ss_pred             hccc
Confidence            7744

>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []

Probab=89.93  E-value=13  Score=36.61  Aligned_cols=138  Identities=20%  Similarity=0.241  Sum_probs=74.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Q 017151           10 NESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAY   89 (376)
Q Consensus        10 ~~~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAY   89 (376)
                      .+.|++.+|+.-|.+|-.||..+++.+=-...+.. =..++      ...|.+.++.|+++|...     .|.+=|.+  
T Consensus        87 ~e~Es~~~kl~RL~~Ev~EL~eEl~~~~~~~~~~~-~e~~~------~~~l~~~~~~L~~~L~~l-----~l~~~lg~--  152 (388)
T PF04912_consen   87 SEKESPEQKLQRLRREVEELKEELEKRKADSKESD-EEKIS------PEELAQQLEELSKQLDSL-----KLEELLGE--  152 (388)
T ss_pred             CCcCCHHHHHHHHHHHHHHHHHHHHHHhhcccccc-cccCC------hhhHHHHHHHHHHHHHHh-----hcccccch--
Confidence            45799999999999999999999998643211110 00000      122345566666666655     11111111  


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhh--hhhhHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 017151           90 RIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAER--DNSVMEAEKAKEKEE-LMSQKFNEFQTRLEELSSENIE  164 (376)
Q Consensus        90 RiK~qLadLh~ae~~KN~e~EkqVkFfQs~vA~AFAER--D~slmEaEKaKE~Ee-~m~qk~~e~e~R~~E~~s~~~~  164 (376)
                         .++.++..+.-.-...+-.++.-|++..+++-..-  |...-|.-...+... .-+++++.|+.|+..|++.+--
T Consensus       153 ---~~~~~~~~~~~~~~~kl~~~l~~~k~~~~~~~~~~~~~~ityel~~~p~~~~~~~la~~a~LE~RL~~LE~~lG~  227 (388)
T PF04912_consen  153 ---ETAQDLSDPQKALSKKLLSQLESFKSSSGAGSSPANSDHITYELYYPPEQAKSQQLARAADLEKRLARLESALGI  227 (388)
T ss_pred             ---hhhcccccchhhHHHHHHHhhhhcccccccCCCCCCCCceeeeeecCcccchhhHHHHHHHHHHHHHHHHHHhCC
Confidence               23333333444455666677777764333221111  111111111222222 2468999999999999988765

It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=89.46  E-value=30  Score=36.18  Aligned_cols=48  Identities=25%  Similarity=0.361  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHH
Q 017151           13 EALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQE   63 (376)
Q Consensus        13 esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQe   63 (376)
                      +.+.+++.+++.++++.++.+.++   .+|+++++.++-.+.+=-.-++.+
T Consensus       265 ~~Le~ei~~le~e~~e~~~~l~~l---~~~~~p~~l~~~ll~~~~~q~~~e  312 (650)
T TIGR03185       265 EQLERQLKEIEAARKANRAQLREL---AADPLPLLLIPNLLDSTKAQLQKE  312 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---hcccCCHhhhHHHHHHHHHHHHHH
Confidence            466677777777777777766555   477888888876665433334433

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=89.29  E-value=18  Score=33.37  Aligned_cols=52  Identities=25%  Similarity=0.279  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHH
Q 017151          140 KEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVIN  191 (376)
Q Consensus       140 ~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~  191 (376)
                      +-..+.+++.+.+.|.+.++..+.......+.|..+|...++......+-++
T Consensus       177 ~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld  228 (237)
T PF00261_consen  177 KIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELD  228 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445666666666666666666666666666666666666665555554

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PRK03918 chromosome segregation protein; Provisional

Probab=88.87  E-value=34  Score=36.03  Aligned_cols=63  Identities=25%  Similarity=0.325  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH---------HHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhh
Q 017151           15 LMARIQQLEHERDELRKDIEQL---------CMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARE   77 (376)
Q Consensus        15 l~aRI~qLEhERDELrKDIEqL---------CMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rE   77 (376)
                      +..++.+++.+.++|.+-++.|         |-+.=||.|-.-.+-=+-+....|+.+|+.|++++..+..+
T Consensus       410 l~~~~~~~~~~i~eL~~~l~~L~~~~~~Cp~c~~~L~~~~~~el~~~~~~ei~~l~~~~~~l~~~~~~l~~~  481 (880)
T PRK03918        410 ITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKE  481 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444455555444322         34444454533333334455555666666666655555443

>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin

Probab=88.47  E-value=1.1  Score=38.78  Aligned_cols=57  Identities=23%  Similarity=0.250  Sum_probs=45.0

Q ss_pred             HHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhh
Q 017151          113 VKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELN  183 (376)
Q Consensus       113 VkFfQs~vA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~  183 (376)
                      ++|-|+=-+.  -|||.+.||.|||.            +..|+..|+.....++.+|.+|..-+.+|+--.
T Consensus         6 l~fLQ~Ew~r--~ErdR~~WeiERaE------------mkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aL   62 (134)
T PF08232_consen    6 LHFLQTEWHR--FERDRNQWEIERAE------------MKARIAFLEGERRGQENLKKDLKRRIKMLEYAL   62 (134)
T ss_pred             HHHHHHHHHH--HHHHHHHhHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566665544  38999999999986            667888899999999999999988887776433

Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].

>smart00787 Spc7 Spc7 kinetochore protein

Probab=88.46  E-value=27  Score=34.35  Aligned_cols=125  Identities=20%  Similarity=0.228  Sum_probs=81.2

Q ss_pred             hhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhh-hhhhhHHH
Q 017151           56 RTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAE-RDNSVMEA  134 (376)
Q Consensus        56 RtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~vA~AFAE-RD~slmEa  134 (376)
                      |+.-++-=++.|...+.+.-.|...|-..+..+=.++-.|-+.|..=..+-..+.+.+..+++|=..-+.. | ..|   
T Consensus       138 R~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk-~~l---  213 (312)
T smart00787      138 RMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAK-EKL---  213 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHH-HHH---
Confidence            55555555667777788888888888877777777777777777655555555555555555553322211 1 111   


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhH
Q 017151          135 EKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE  184 (376)
Q Consensus       135 EKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e  184 (376)
                      .+....-+.+.+++.+++.++.++.+.+.+.+.....++.+++..+...+
T Consensus       214 ~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~  263 (312)
T smart00787      214 KKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLE  263 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            12233345567788888889998888888888888777777766655333

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PRK11637 AmiB activator; Provisional

Probab=87.99  E-value=29  Score=34.28  Aligned_cols=46  Identities=13%  Similarity=0.221  Sum_probs=22.8

Q ss_pred             HhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH-HHHHHHHHHH
Q 017151           55 QRTAGLEQEIEILKQKIAACARENSNLQEELSEAYR-IKGQLADLHA  100 (376)
Q Consensus        55 QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYR-iK~qLadLh~  100 (376)
                      +....++++|..++.++.....+=..++++|...+. ++.++..+|.
T Consensus        89 ~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~  135 (428)
T PRK11637         89 RKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR  135 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555555555555555555543 2333334444

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=87.20  E-value=63  Score=37.20  Aligned_cols=57  Identities=19%  Similarity=0.232  Sum_probs=32.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhh
Q 017151           12 SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACAR   76 (376)
Q Consensus        12 ~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~r   76 (376)
                      .+.+...|.+...+-.++++.++.  ..+..|.|.+-.+.      ..|||.+.....+|...-+
T Consensus        67 ~~~~~~~i~~ap~~~~~~~~~l~~--~~~~~~~~~~~~s~------~~Leq~l~~~~~~L~~~q~  123 (1109)
T PRK10929         67 AKQYQQVIDNFPKLSAELRQQLNN--ERDEPRSVPPNMST------DALEQEILQVSSQLLEKSR  123 (1109)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHh--hhcccccccccCCH------HHHHHHHHHHHHHHHHHHH
Confidence            445556666666677778888886  45555666333222      4555555555444444333

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=86.52  E-value=14  Score=39.99  Aligned_cols=28  Identities=11%  Similarity=0.200  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHhhhhccchhhhhHHHHHh
Q 017151          294 HSQLRVHVVNSLEEGRSHIKSISDVIEE  321 (376)
Q Consensus       294 h~~~R~~Im~lL~e~~s~iks~v~~i~e  321 (376)
                      =..|+..|-++|.+...+|+..|+.|..
T Consensus       683 ~~~Q~~~I~~iL~~~~~~I~~~v~~ik~  710 (717)
T PF10168_consen  683 SESQKRTIKEILKQQGEEIDELVKQIKN  710 (717)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3568889999999999999999988764

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=86.49  E-value=2.6  Score=44.31  Aligned_cols=124  Identities=21%  Similarity=0.200  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhcccccccccccCcch
Q 017151          151 FQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTST  230 (376)
Q Consensus       151 ~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSfn~tSt  230 (376)
                      ..+++..|+..+.....-+..|+.++..++.+.+..        .+|     ..--...-|+=.|=+.|.-.|-+.-   
T Consensus       501 ~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~--------~L~-----g~~~~~~trVL~lr~NP~~~~~~~k---  564 (722)
T PF05557_consen  501 LSEELNELQKEIEELERENERLRQELEELESELEKL--------TLQ-----GEFNPSKTRVLHLRDNPTSKAEQIK---  564 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CCC-----T--BTTTEEEEEESS-HHHHHHHHH---
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhc-----cccCCCCceeeeeCCCcHHHHHHHH---
Confidence            344555555555555555566666665555554410        011     0001222344444455543333321   


Q ss_pred             hHhHHHHHHHHHHHHhhHHHHhhhhhh--------hHHHH----HHhHHhHHHHHHhhhhhHHHHHHHHHHH
Q 017151          231 SKYISALEDELEKTRSSVENLQSKLRM--------GLEIE----NHLKKSVRELEKKIIHSDKFISNAIAEL  290 (376)
Q Consensus       231 skyisaLEee~e~lr~si~~LQskLR~--------glEIE----nHLkk~~r~LEk~q~~~d~~i~ngis~L  290 (376)
                      ..=+.+|-.|++.|++.+..|...-..        ++..-    +-|+..+..+||+..-+-.++..-+.++
T Consensus       565 ~~~l~~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eF  636 (722)
T PF05557_consen  565 KSTLEALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFKAKSQEF  636 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            123456666666666666555422111        12211    2467777777777666666665555544

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG2991 consensus Splicing regulator [RNA processing and modification]

Probab=85.13  E-value=31  Score=34.73  Aligned_cols=193  Identities=22%  Similarity=0.255  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHH
Q 017151           14 ALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKG   93 (376)
Q Consensus        14 sl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~   93 (376)
                      .+..--.+++.-||||++---+    +---.|+.|+-   .+|+.=|.-+|++||.                 .--++|.
T Consensus        67 ~~~seq~~~~~a~~elq~~ks~----~Q~e~~v~a~e---~~~~rll~d~i~nLk~-----------------se~~lkq  122 (330)
T KOG2991|consen   67 VRLSEQDFKVMARDELQLRKSW----KQYEAYVQALE---GKYTRLLSDDITNLKE-----------------SEEKLKQ  122 (330)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhc---CcccchhHHHHHhhHH-----------------HHHHHHH
Confidence            3444455667778888753111    11134555543   3888889999999986                 2235666


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Q 017151           94 QLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLR  173 (376)
Q Consensus        94 qLadLh~ae~~KN~e~EkqVkFfQs~vA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq  173 (376)
                      |+++-                                       +.+|....-.++.-++-+-||.|++.+.|.+-.---
T Consensus       123 Q~~~a---------------------------------------~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~  163 (330)
T KOG2991|consen  123 QQQEA---------------------------------------ARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSV  163 (330)
T ss_pred             HHHHH---------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHH
Confidence            65544                                       344555556677777777788888887775432111


Q ss_pred             hhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhcccccccccccC-cchhHhHHH----HHHHHHHHHhhH
Q 017151          174 FDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFND-TSTSKYISA----LEDELEKTRSSV  248 (376)
Q Consensus       174 ~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSfn~-tStskyisa----LEee~e~lr~si  248 (376)
                      +.     ..+-.+--.||-||.--...++.-+--.++     +-+-..-|.|.- .-|-|-+=|    |-+|++.|-...
T Consensus       164 ~q-----lR~~llDPAinl~F~rlK~ele~tk~Klee-----~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~  233 (330)
T KOG2991|consen  164 AQ-----LRSTLLDPAINLFFLRLKGELEQTKDKLEE-----AQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQA  233 (330)
T ss_pred             HH-----HHHHhhChHHHHHHHHHHHHHHHHHHHHHH-----HHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhh
Confidence            11     112223366777776555554442211111     122233488873 345555433    666666554333


Q ss_pred             HHHhhhhhh-hHHHHHHhHHhHH-HHHHhhhhhHHHH
Q 017151          249 ENLQSKLRM-GLEIENHLKKSVR-ELEKKIIHSDKFI  283 (376)
Q Consensus       249 ~~LQskLR~-glEIEnHLkk~~r-~LEk~q~~~d~~i  283 (376)
                          |+=|+ -||||=-++|.-+ +|-+.|--.++||
T Consensus       234 ----s~Gria~Le~eLAmQKs~seElkssq~eL~dfm  266 (330)
T KOG2991|consen  234 ----SEGRIAELEIELAMQKSQSEELKSSQEELYDFM  266 (330)
T ss_pred             ----hcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHH
Confidence                33343 3777777776654 3444444444443

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=85.04  E-value=51  Score=34.19  Aligned_cols=82  Identities=21%  Similarity=0.232  Sum_probs=46.3

Q ss_pred             hhHHHHHHHHHHHHHhhhh--hcchHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHH
Q 017151           59 GLEQEIEILKQKIAACARE--NSNLQEELSEAYRIKGQLADL---HAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVME  133 (376)
Q Consensus        59 ~LEQeIE~Lkkkl~~c~rE--n~nLQEELsEAYRiK~qLadL---h~ae~~KN~e~EkqVkFfQs~vA~AFAERD~slmE  133 (376)
                      +++.+|+.+++++..+...  +..|-.--..-=.|..++..|   ...|..-.+.+++...-..+.+..+=..=+.-.-|
T Consensus       253 ~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~E  332 (569)
T PRK04778        253 DIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEE  332 (569)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555555554321  122222222223344444444   44777777888888887777777766666666666


Q ss_pred             HHHhHHH
Q 017151          134 AEKAKEK  140 (376)
Q Consensus       134 aEKaKE~  140 (376)
                      .+..++.
T Consensus       333 i~~l~~s  339 (569)
T PRK04778        333 IDRVKQS  339 (569)
T ss_pred             HHHHHHc
Confidence            6666655

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=83.16  E-value=31  Score=30.22  Aligned_cols=37  Identities=35%  Similarity=0.303  Sum_probs=23.6

Q ss_pred             HHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Q 017151           53 HFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAY   89 (376)
Q Consensus        53 ~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAY   89 (376)
                      +-+|...+|++|..|++|+...-.+=..+++.|.++-
T Consensus        26 le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k   62 (143)
T PF12718_consen   26 LEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAK   62 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666677777777766666666666666666554

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=82.31  E-value=7.3  Score=36.75  Aligned_cols=70  Identities=31%  Similarity=0.403  Sum_probs=50.4

Q ss_pred             hHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhcC-CchHHHhhHHHHHhhhhhHH---HHHHHHHHHHHhhhhhcc
Q 017151           12 SEALMARIQQLEH-------ERDELRKDIEQLCMQQAG-PSYLAVATRMHFQRTAGLEQ---EIEILKQKIAACARENSN   80 (376)
Q Consensus        12 ~esl~aRI~qLEh-------ERDELrKDIEqLCMQQaG-pgyl~vATRM~~QRtA~LEQ---eIE~Lkkkl~~c~rEn~n   80 (376)
                      +-+|.+.|.-|+.       |+|.|.+++++||+.-++ ++-|-+.++...+|-+-+..   .|+.|++-+..++.=+.-
T Consensus        97 ~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~tee  176 (193)
T PF14662_consen   97 QQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEE  176 (193)
T ss_pred             HHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            4456666665554       899999999999999888 88888889999999887753   455666555444443333


Q ss_pred             h
Q 017151           81 L   81 (376)
Q Consensus        81 L   81 (376)
                      |
T Consensus       177 L  177 (193)
T PF14662_consen  177 L  177 (193)
T ss_pred             H
Confidence            3

>PRK10884 SH3 domain-containing protein; Provisional

Probab=81.79  E-value=25  Score=32.77  Aligned_cols=26  Identities=19%  Similarity=0.267  Sum_probs=19.2

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHhhh
Q 017151           51 RMHFQRTAGLEQEIEILKQKIAACAR   76 (376)
Q Consensus        51 RM~~QRtA~LEQeIE~Lkkkl~~c~r   76 (376)
                      .-...|...||+++..|+.+|.....
T Consensus        89 p~~~~rlp~le~el~~l~~~l~~~~~  114 (206)
T PRK10884         89 PSLRTRVPDLENQVKTLTDKLNNIDN  114 (206)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34557888888888888888776443

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=81.68  E-value=60  Score=37.41  Aligned_cols=140  Identities=21%  Similarity=0.189  Sum_probs=90.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhh-hcchHHHHHHH-H
Q 017151           12 SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARE-NSNLQEELSEA-Y   89 (376)
Q Consensus        12 ~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rE-n~nLQEELsEA-Y   89 (376)
                      ...-++.|++|+.+-|.|.||+|.+|-=+.--++|.+                  |.+|.--+-=+ -.+-+.++-.| =
T Consensus       197 ~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~------------------l~~k~~~v~y~~~~~ey~~~k~~~~  258 (1072)
T KOG0979|consen  197 LTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIEL------------------LEKKKKWVEYKKHDREYNAYKQAKD  258 (1072)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHhccccchHhhhHHHHHHHHHHH
Confidence            4455678889999999999999999976665566432                  21111111100 01122222223 3


Q ss_pred             HHHHHHHHHHH---HHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017151           90 RIKGQLADLHA---AEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELK  166 (376)
Q Consensus        90 RiK~qLadLh~---ae~~KN~e~EkqVkFfQs~vA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk  166 (376)
                      |.|.++-+|-.   .=..+-+++|+       -++-.++.=+..-+++-++..+--...-+|.+++.++.++....+..+
T Consensus       259 r~k~~~r~l~k~~~pi~~~~eeLe~-------~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk  331 (1072)
T KOG0979|consen  259 RAKKELRKLEKEIKPIEDKKEELES-------EKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLK  331 (1072)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhHHh-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66777766633   22345566776       345677777777788888888888888888889999998888888777


Q ss_pred             hhhHHHhhhH
Q 017151          167 KQNATLRFDL  176 (376)
Q Consensus       167 ~~n~~Lq~dl  176 (376)
                      ..-...|.++
T Consensus       332 ~~~~~rq~~i  341 (1072)
T KOG0979|consen  332 KAAEKRQKRI  341 (1072)
T ss_pred             HHHHHHHHHH
Confidence            6666555555

>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein)

Probab=81.39  E-value=6.7  Score=31.62  Aligned_cols=55  Identities=25%  Similarity=0.357  Sum_probs=46.5

Q ss_pred             CcchhHhHHHHHHHHHHHHhhHHHHhhhh---------hhhHHHHHHhHHhHHHHHHhhhhhHH
Q 017151          227 DTSTSKYISALEDELEKTRSSVENLQSKL---------RMGLEIENHLKKSVRELEKKIIHSDK  281 (376)
Q Consensus       227 ~tStskyisaLEee~e~lr~si~~LQskL---------R~glEIEnHLkk~~r~LEk~q~~~d~  281 (376)
                      +.+.+.-|.+|++|++.++-....|+..+         |..-.+++||++-|..||.|--.+.+
T Consensus        12 ~~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~   75 (79)
T PF06657_consen   12 GEALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIYK   75 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56789999999999999999888885543         67889999999999999998655443

It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins

Probab=81.36  E-value=18  Score=34.50  Aligned_cols=42  Identities=21%  Similarity=0.289  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhH
Q 017151          143 LMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE  184 (376)
Q Consensus       143 ~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e  184 (376)
                      -+.+|=.-|-.|..||+.++..++.....||.++..++.-|-
T Consensus        83 IVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~  124 (248)
T PF08172_consen   83 IVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNV  124 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677889999999999999999999999999999999998

These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=81.14  E-value=37  Score=36.06  Aligned_cols=67  Identities=24%  Similarity=0.361  Sum_probs=47.7

Q ss_pred             HHHHHHHHhhhhHHHHHh-hhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHH
Q 017151          108 EAEKQVKFFQGCMAAAFA-ERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQ  179 (376)
Q Consensus       108 e~EkqVkFfQs~vA~AFA-ERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~  179 (376)
                      ++|.|-.+|-...--+=+ +-|.+.+|++|     ..|.+++.+++.++...++....++++|-.|+.++-..
T Consensus       348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~k-----k~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw  415 (493)
T KOG0804|consen  348 QLENQKQYYELLITEADSLKQESSDLEAEK-----KIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVW  415 (493)
T ss_pred             HHHhHHHHHHHHHHHHHhhhhhhhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            444444455444444444 55677777654     45778999999999999999999999998888777433

>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea

Probab=80.76  E-value=10  Score=29.52  Aligned_cols=74  Identities=27%  Similarity=0.381  Sum_probs=51.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhcCCchH----HHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhc
Q 017151           12 SEALMARIQQLEHERDELRKDIEQL--------CMQQAGPSYL----AVATRMHFQRTAGLEQEIEILKQKIAACARENS   79 (376)
Q Consensus        12 ~esl~aRI~qLEhERDELrKDIEqL--------CMQQaGpgyl----~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~   79 (376)
                      ...+.++|.+|+++.+++.-=++.|        |+..-|+-||    .-+.-++-.+...++.+|++|++++..+...=.
T Consensus        14 l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~   93 (106)
T PF01920_consen   14 LQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLK   93 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677777777666655444433        8888888886    346677888888888888888888777666555


Q ss_pred             chHHHH
Q 017151           80 NLQEEL   85 (376)
Q Consensus        80 nLQEEL   85 (376)
                      .++..|
T Consensus        94 ~~~~~l   99 (106)
T PF01920_consen   94 ELKKKL   99 (106)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555444

Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=80.25  E-value=8.5  Score=31.06  Aligned_cols=73  Identities=27%  Similarity=0.369  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh---hcCCch--H-------------HHhhHHHHHhhhhhHHHHHHHHHHHHHhhh
Q 017151           15 LMARIQQLEHERDELRKDIEQLCMQ---QAGPSY--L-------------AVATRMHFQRTAGLEQEIEILKQKIAACAR   76 (376)
Q Consensus        15 l~aRI~qLEhERDELrKDIEqLCMQ---QaGpgy--l-------------~vATRM~~QRtA~LEQeIE~Lkkkl~~c~r   76 (376)
                      .....+.+.+|-+.|++.++.|...   --|++.  +             ....|+-++.+.-|..+|++|++|...+..
T Consensus        10 ~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~   89 (100)
T PF01486_consen   10 WDSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEE   89 (100)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566666777777777777663   345432  1             235678888888999999999999999999


Q ss_pred             hhcchHHHHHH
Q 017151           77 ENSNLQEELSE   87 (376)
Q Consensus        77 En~nLQEELsE   87 (376)
                      +|..|+..+.|
T Consensus        90 en~~L~~~~~e  100 (100)
T PF01486_consen   90 ENNQLRQKIEE  100 (100)
T ss_pred             HHHHHHHHhcC
Confidence            99999988754

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6

Probab=80.14  E-value=17  Score=27.73  Aligned_cols=58  Identities=28%  Similarity=0.442  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhH----HHHHhhhhhHHHHHHHHHHHH
Q 017151           15 LMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATR----MHFQRTAGLEQEIEILKQKIA   72 (376)
Q Consensus        15 l~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATR----M~~QRtA~LEQeIE~Lkkkl~   72 (376)
                      +.+-|.-|+.+.+.+.++|+.+=--=+.|||++=|..    -...+-+.++.+++.|...|.
T Consensus         2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~   63 (66)
T PF10458_consen    2 VEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALE   63 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456788999999999999999888889999886653    234455666666777766554

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	376
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-04
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.7 bits (154), Expect = 4e-11
 Identities = 64/474 (13%), Positives = 150/474 (31%), Gaps = 155/474 (32%)

Query: 18  RIQQLEHERDELRKDIEQLC---------MQQAGPSYLAVAT--------RMHFQ---RT 57
           R+Q       +LR+ + +L          +  +G +++A+          +M F+     
Sbjct: 133 RLQPYL----KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188

Query: 58  AGLEQEIE-ILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFF 116
                  E +L+       + + N       +  IK ++  +     ++ +   K    +
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI--QAELRRLLKSKP---Y 243

Query: 117 QGCM-----------AAAFA--------ERDNSVMEAEKAKEKEEL----MSQKFNEFQT 153
           + C+             AF          R   V +   A     +     S      + 
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 154 RLEELSSENIELKKQNATLRFDL-----------------EKQEELN--ESFKEV-INKF 193
             + L  + ++ + Q      DL                   ++ L   +++K V  +K 
Sbjct: 304 --KSLLLKYLDCRPQ------DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355

Query: 194 YEIRQQSLEVLETSWEDK-----CACLLLDS-------AEMWSFNDTSTSKYI------- 234
             I + SL VLE + E +      +     +       + +W     S    +       
Sbjct: 356 TTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 235 SALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKII----------------- 277
           S +E + +++  S+ ++  +L++ LE E         L + I+                 
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENE-------YALHRSIVDHYNIPKTFDSDDLIPP 467

Query: 278 HSDKFISNAIA--------------------ELRLCHSQLRVHVVNSLEEGRSHIKSISD 317
           + D++  + I                     + R    ++R H   +     S + ++  
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR-HDSTAWNASGSILNTLQQ 526

Query: 318 VIEEKTQHCDDVIRGQNTGTYQRETK-LDEFECR-DVHINNDADTNLVSQVCLL 369
           +   K   CD      N   Y+R    + +F  + + ++     T+L+ ++ L+
Sbjct: 527 LKFYKPYICD------NDPKYERLVNAILDFLPKIEENLICSKYTDLL-RIALM 573

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 1e-06
 Identities = 44/321 (13%), Positives = 101/321 (31%), Gaps = 69/321 (21%)

Query: 1   MDENSKE-KENESEALMARIQQLEHERDELRKDIEQLCMQQAGP---SYLAVATRMHFQR 56
           +D +S     +E ++L+ +   L+    +L     ++      P   S +A + R     
Sbjct: 291 LDHHSMTLTPDEVKSLLLKY--LDCRPQDLP---REVL--TTNPRRLSIIAESIRDGLAT 343

Query: 57  TAGLEQ-EIEILKQKIAACARENSNLQ-EELSEAYRIKGQLA----DLH-AAEVIK---- 105
               +    + L   I +     + L+  E  + +    +L+      H    ++     
Sbjct: 344 WDNWKHVNCDKLTTIIESSL---NVLEPAEYRKMFD---RLSVFPPSAHIPTILLSLIWF 397

Query: 106 NMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIEL 165
           ++     +         +  E+          +    + S           E +     +
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPK-------ESTISIPSIYLELKVKLENEYALHRSIV 450

Query: 166 KKQNATLRFDLE-------------------KQEELNESFKEVINKFYEIR--QQSLEVL 204
              N    FD +                   K  E  E        F + R  +Q +   
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510

Query: 205 ETSWEDKCACL--LLDSAEMWSF---NDTSTSKYISALEDELEKTRSSVENLQSK----L 255
            T+W    + L  L        +   ND    + ++A+ D L K   ++  + SK    L
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL--ICSKYTDLL 568

Query: 256 RMGLEIENH--LKKSVRELEK 274
           R+ L  E+    +++ +++++
Sbjct: 569 RIALMAEDEAIFEEAHKQVQR 589

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 58.7 bits (142), Expect = 1e-09
 Identities = 49/280 (17%), Positives = 101/280 (36%), Gaps = 27/280 (9%)

Query: 3    ENSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQ 62
            E   E E     L A+ Q+LE    E+   IE+              ++        ++Q
Sbjct: 906  ELYAEAEEMRVRLAAKKQELEEILHEMEARIEEE----------EERSQQLQAEKKKMQQ 955

Query: 63   EIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAA 122
            ++  L++++         LQ E   A     ++ D       +N +  K+ K  +  ++ 
Sbjct: 956  QMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSD 1015

Query: 123  A---FAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQ 179
                 AE +       K K K E      +E + RL++      EL+K    L  +    
Sbjct: 1016 LTTNLAEEEEKAKNLTKLKNKHE---SMISELEVRLKKEEKSRQELEKIKRKLEGESSDL 1072

Query: 180  EELNESFKEVINKFYEI---RQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISA 236
             E     +  I +       +++ L+      ED+ +       ++          +IS 
Sbjct: 1073 HEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKI-----RELESHISD 1127

Query: 237  LEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKI 276
            L+++LE  +++    + + R   ++   L+    ELE  +
Sbjct: 1128 LQEDLESEKAARNKAEKQKR---DLSEELEALKTELEDTL 1164

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 53.3 bits (128), Expect = 8e-08
 Identities = 50/270 (18%), Positives = 100/270 (37%), Gaps = 12/270 (4%)

Query: 55   QRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVK 114
            +R    E E++ L+QK      E + LQE+L     +  +  ++      K  E E+ + 
Sbjct: 871  ERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILH 930

Query: 115  FFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRF 174
              +  +            E +K +++   + ++  E +   ++L  E +    +   +  
Sbjct: 931  EMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMED 990

Query: 175  DLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYI 234
            D+   E+ N    +      E        L    E+K   L     +            I
Sbjct: 991  DILIMEDQNNKLTKERKLLEERVSDLTTNLAEE-EEKAKNLTKLKNKH--------ESMI 1041

Query: 235  SALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCH 294
            S LE  L+K   S + L+   R      + L + + EL+ +I      ++    EL+   
Sbjct: 1042 SELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAAL 1101

Query: 295  SQL---RVHVVNSLEEGRSHIKSISDVIEE 321
            ++L        N+L++ R     ISD+ E+
Sbjct: 1102 ARLEDETSQKNNALKKIRELESHISDLQED 1131

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.8 bits (106), Expect = 4e-05
 Identities = 30/205 (14%), Positives = 68/205 (33%), Gaps = 24/205 (11%)

Query: 1    MDENSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGL 60
            M++ + +   E + L  R+  L     E  +  + L   +                    
Sbjct: 995  MEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNK-----------------H 1037

Query: 61   EQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCM 120
            E  I  L+ ++    +E  + QE      +++G+ +DLH     +  E + Q+   +  +
Sbjct: 1038 ESMISELEVRL---KKEEKSRQELEKIKRKLEGESSDLHE----QIAELQAQIAELKAQL 1090

Query: 121  AAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQE 180
            A    E   ++   E    ++    +K  E ++ + +L  +    K              
Sbjct: 1091 AKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLS 1150

Query: 181  ELNESFKEVINKFYEIRQQSLEVLE 205
            E  E+ K  +    +      E+  
Sbjct: 1151 EELEALKTELEDTLDTTATQQELRG 1175

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 26/175 (14%), Positives = 62/175 (35%), Gaps = 15/175 (8%)

Query: 3    ENSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQ 62
            +     EN+   L  +I +   E   L + +  L   +   S      R   +R    E+
Sbjct: 921  KLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNL---EITYSTETEKLRSDVERLRMSEE 977

Query: 63   EIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAA 122
            E +    ++ +   E + L++EL +    K  + +       +  +   ++         
Sbjct: 978  EAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSEL--------- 1028

Query: 123  AFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLE 177
               +  N++++ EK +    +  Q     +T  ++L  E  +L+      R   +
Sbjct: 1029 ---KEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 34/197 (17%), Positives = 83/197 (42%), Gaps = 13/197 (6%)

Query: 6    KEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIE 65
                           Q  + R   ++++++L ++       A +   + +   GLE +I 
Sbjct: 879  ARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIE-------ARSVERYKKLHIGLENKIM 931

Query: 66   ILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFA 125
             L++KI    +E  +L E+++          +   ++V +   +E++ K     + +   
Sbjct: 932  QLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQE 991

Query: 126  ERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNES 185
            E      E  + + +++ + +  ++++   E+L S   ELK+QN  L+    ++EELN  
Sbjct: 992  EIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVS---ELKEQNTLLK---TEKEELNRR 1045

Query: 186  FKEVINKFYEIRQQSLE 202
              +   +  E  ++ L 
Sbjct: 1046 IHDQAKEITETMEKKLV 1062

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 45/296 (15%), Positives = 93/296 (31%), Gaps = 41/296 (13%)

Query: 30   RKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILK-QKIAACARENSNLQEELSEA 88
            R     L   +A         RM+  R          +  Q +       +  Q  L E 
Sbjct: 807  RCYATFLRRTRAAIIIQKFQ-RMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREH 865

Query: 89   YRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKF 148
              I  Q         +      K + + Q C     A+R     E +K K +        
Sbjct: 866  KSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKR-----ELKKLKIEAR------ 914

Query: 149  NEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSW 208
                  +E     +I L+ +   L+  +++Q +  +S  E +N            LE ++
Sbjct: 915  -----SVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNN-----------LEITY 958

Query: 209  EDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKS 268
              +   L  D   +               E+E +   + V +LQ ++    +  +  +  
Sbjct: 959  STETEKLRSDVERL------------RMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTE 1006

Query: 269  VRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQ 324
             + +E+            ++EL+  ++ L+              K I++ +E+K  
Sbjct: 1007 KKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLV 1062

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 30/281 (10%), Positives = 77/281 (27%), Gaps = 38/281 (13%)

Query: 2    DENSKEKENESEALMARIQQLEHERDELRKDIEQLCM------QQAGPSYLAVATRMHFQ 55
            +          +        L       R  +    +       +A    L    R ++ 
Sbjct: 1833 NPQYIAPPVFIQEAEIMGNNLMAIPPSHRDAVVSSLVYIHQTIGEANIRLLKRQGRQNYV 1892

Query: 56   RTAGLEQEIE----ILKQK----IAACARENSNLQ---EELSEAYRIKGQLADLHAAEVI 104
                    I     ++ +K           N  L+   +  ++   ++  LA  +    +
Sbjct: 1893 TPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDV 1952

Query: 105  KNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIE 164
            KN +A +++K       AA  ++ ++     +   + + ++ +  +    LE+       
Sbjct: 1953 KNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPL 2012

Query: 165  -------LKKQNATLRFDLEKQEELNESFKEV--INKFYEIRQQSLEVLETSWEDKCACL 215
                       N       E    +    K +    + Y    +  E ++T         
Sbjct: 2013 REEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSK--VKN 2070

Query: 216  LLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLR 256
             +D +             +  L  E  +     EN  +++ 
Sbjct: 2071 KVDRSI----------ALLDNLNSERGRWEQQSENFNTQMS 2101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	376
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	92.75
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	92.24
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	92.05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	91.01
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	90.94
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	90.7
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	90.3
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	89.96
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	88.88
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	88.85
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	87.53
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	86.3
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	86.28
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	84.99
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	83.98
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	83.28
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	82.77
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	82.39
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	82.31
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	82.3
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	80.75

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=92.75  E-value=1.1  Score=42.53  Aligned_cols=63  Identities=10%  Similarity=0.133  Sum_probs=41.3

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhh
Q 017151          136 KAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQ  198 (376)
Q Consensus       136 KaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~  198 (376)
                      +.++..+..-+++..+++..++++..+++++..-..++.+.+.++.+...+...+++=|+-|.
T Consensus       527 ~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~~~~  589 (597)
T 3oja_B          527 ARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRR  589 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred             HHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence            333444445566677777777888888888888888888888888888877788887777763

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=92.24  E-value=3.8  Score=32.98  Aligned_cols=23  Identities=13%  Similarity=0.317  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 017151           14 ALMARIQQLEHERDELRKDIEQL   36 (376)
Q Consensus        14 sl~aRI~qLEhERDELrKDIEqL   36 (376)
                      .+..++..|+++.+.+..+++.|
T Consensus         3 ~~~~~~~~l~~~~~~~~~~~~~l   25 (284)
T 1c1g_A            3 AIKKKMQMLKLDKENALDRADEA   25 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHH
Confidence            34555666666666666655554

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=92.05  E-value=4  Score=32.84  Aligned_cols=24  Identities=8%  Similarity=0.202  Sum_probs=12.5

Q ss_pred             hHHHHHHHHHHHHhhHHHHhhhhh
Q 017151          233 YISALEDELEKTRSSVENLQSKLR  256 (376)
Q Consensus       233 yisaLEee~e~lr~si~~LQskLR  256 (376)
                      -+..+++++..++..++.++..++
T Consensus       217 ~~~~~~~~l~~l~~~~~~~~~~~~  240 (284)
T 1c1g_A          217 KEDKYEEEIKVLSDKLKEAETRAE  240 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555555443

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=91.01  E-value=1.1  Score=47.97  Aligned_cols=13  Identities=46%  Similarity=0.501  Sum_probs=6.1

Q ss_pred             HHHHHHHHHHHHH
Q 017151           20 QQLEHERDELRKD   32 (376)
Q Consensus        20 ~qLEhERDELrKD   32 (376)
                      ..||..|++.-.+
T Consensus       781 ~~LE~~r~~~l~~  793 (1184)
T 1i84_S          781 AHLEEERDLKITD  793 (1184)
T ss_dssp             HHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3455555544333

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=90.94  E-value=1.1  Score=35.73  Aligned_cols=65  Identities=22%  Similarity=0.346  Sum_probs=51.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 017151           11 ESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSE   87 (376)
Q Consensus        11 ~~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsE   87 (376)
                      --++.+.+|..||.+=-.|..+|+++.-  .||+      ++.    .-.+.+|+.|+.++...+.+|..|.-|+..
T Consensus        17 RlAsyIdKVR~LEqqN~~Le~~i~~l~~--~~~~------~~~----~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dn   81 (93)
T 3s4r_A           17 RFANLIDKVRFLEQQNKILLAELEQLKG--QGKS------RLG----DLYEEEMRELRRQVDQLTNDKARVEVERDN   81 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH------HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccCC------CcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3578889999999999999999999863  3443      222    125888999999999999999998888765

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=90.70  E-value=9.1  Score=34.42  Aligned_cols=121  Identities=26%  Similarity=0.280  Sum_probs=68.9

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccc
Q 017151          134 AEKAKEKEELMSQKFNEFQTRLEELSSENIE----LKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWE  209 (376)
Q Consensus       134 aEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~----qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~  209 (376)
                      |++.+.+-+.+-..|++|++=-+||+..++.    ....+..|+..++.++...++.                      -
T Consensus        19 ~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~----------------------k   76 (189)
T 2v71_A           19 SMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEAL----------------------K   76 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------H
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------H
Confidence            4445555555556666776666555554433    3334555555555555554422                      2


Q ss_pred             chhhhhcccccccccccCcchhHhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHH
Q 017151          210 DKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAE  289 (376)
Q Consensus       210 ~Kc~~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~LEk~q~~~d~~i~ngis~  289 (376)
                      .|..-.-..           .++-|++|+.++..++...+              .|++++|.||..+--+..=.|+-.+.
T Consensus        77 ~K~~~~~~e-----------~~~~~~~Lq~el~~l~~~~~--------------~l~~~ireLEq~NDdlEr~~R~~~~S  131 (189)
T 2v71_A           77 EKLEHQYAQ-----------SYKQVSVLEDDLSQTRAIKE--------------QLHKYVRELEQANDDLERAKRATIMS  131 (189)
T ss_dssp             HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhhHHHHHHHHHHhh
Confidence            222111100           23458888888888876554              45566777777777776667777777


Q ss_pred             HHHHHHHHHHHH
Q 017151          290 LRLCHSQLRVHV  301 (376)
Q Consensus       290 L~~~h~~~R~~I  301 (376)
                      |.-+.+.+=.-|
T Consensus       132 leD~e~kln~ai  143 (189)
T 2v71_A          132 LEDFEQRLNQAI  143 (189)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            776666654444

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=90.30  E-value=1.2  Score=47.60  Aligned_cols=13  Identities=0%  Similarity=0.138  Sum_probs=0.0

Q ss_pred             hhhhhHHHHHhhh
Q 017151          311 HIKSISDVIEEKT  323 (376)
Q Consensus       311 ~iks~v~~i~ekl  323 (376)
                      .+..-+..+.++|
T Consensus      1148 ~L~~ele~L~~~I 1160 (1184)
T 1i84_S         1148 DLSEELEALKTEL 1160 (1184)
T ss_dssp             -------------
T ss_pred             HHHHHHHHHHHHH
Confidence            3333344444444

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=89.96  E-value=10  Score=33.79  Aligned_cols=124  Identities=16%  Similarity=0.227  Sum_probs=81.8

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhh
Q 017151          134 AEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCA  213 (376)
Q Consensus       134 aEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~  213 (376)
                      +.|.|...-.++...+.++.-++||+..+.......+.|+.+++.+..+.+.         +-|.++.. .++       
T Consensus        29 ~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~q---------Er~~r~q~-se~-------   91 (168)
T 3o0z_A           29 AVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEA---------ERRDRGHD-SEM-------   91 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHH-HHH-------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHH-HHH-------
Confidence            4466666667788888899999999999999999999999999999888872         11111110 000       


Q ss_pred             hhcccccccccccCcchhHhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHH
Q 017151          214 CLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLC  293 (376)
Q Consensus       214 ~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~LEk~q~~~d~~i~ngis~L~~~  293 (376)
                        +.|           +-.=|.+|++|++.++.+..++..-       =++|+.++..|||..+-++==+.=-|..||.-
T Consensus        92 --~~e-----------lq~ri~~L~~El~~~k~~~~k~~~e-------~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~  151 (168)
T 3o0z_A           92 --IGD-----------LQARITSLQEEVKHLKHNLEKVEGE-------RKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQR  151 (168)
T ss_dssp             --HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence              000           1124666666666666666655443       45899999999998887763333445556554


Q ss_pred             H
Q 017151          294 H  294 (376)
Q Consensus       294 h  294 (376)
                      |
T Consensus       152 ~  152 (168)
T 3o0z_A          152 L  152 (168)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=88.88  E-value=14  Score=35.16  Aligned_cols=38  Identities=16%  Similarity=0.268  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhh
Q 017151          146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELN  183 (376)
Q Consensus       146 qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~  183 (376)
                      ++..+++.++++......+.++-+.++..++..+++.+
T Consensus       544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~  581 (597)
T 3oja_B          544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK  581 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55556666666666666666666666666666665543

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=88.85  E-value=6  Score=32.36  Aligned_cols=66  Identities=23%  Similarity=0.326  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhcccccccccc
Q 017151          146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSF  225 (376)
Q Consensus       146 qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSf  225 (376)
                      ..+.++...+..++..+..++.+|..|...++..+.+-+.-.+-                                    
T Consensus        36 ~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~------------------------------------   79 (129)
T 3tnu_B           36 HEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKD------------------------------------   79 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH------------------------------------
Confidence            45777788888888888888888888888887766655411111                                    


Q ss_pred             cCcchhHhHHHHHHHHHHHHhhHHHH
Q 017151          226 NDTSTSKYISALEDELEKTRSSVENL  251 (376)
Q Consensus       226 n~tStskyisaLEee~e~lr~si~~L  251 (376)
                          ...-|+.||.++..+|..+...
T Consensus        80 ----~q~~i~~lE~eL~~~r~e~~~q  101 (129)
T 3tnu_B           80 ----ARNKLAELEEALQKAKQDMARL  101 (129)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHhHHHHHHHHHHH
Confidence                2234788999999999887653

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=87.53  E-value=3  Score=37.17  Aligned_cols=77  Identities=26%  Similarity=0.323  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHH----------HHhhhhhHHHHHHHHHHHHHhhhhhcchHH
Q 017151           14 ALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMH----------FQRTAGLEQEIEILKQKIAACARENSNLQE   83 (376)
Q Consensus        14 sl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~----------~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQE   83 (376)
                      -|-.++..|+..|+.|.+|+-+|=-|      |.-=.|..          --|..+|+.|++.++..+.....||..|||
T Consensus        52 ELq~~~~~L~~~k~~Leke~~~LQa~------L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~E  125 (168)
T 3o0z_A           52 ELQERNRILENSKSQTDKDYYQLQAI------LEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQD  125 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35578889999999999999776443      22222222          237889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 017151           84 ELSEAYRIKGQLA   96 (376)
Q Consensus        84 ELsEAYRiK~qLa   96 (376)
                      -++.-=.-|+-+.
T Consensus       126 kl~~lEKe~a~~e  138 (168)
T 3o0z_A          126 MLNHSEKEKNNLE  138 (168)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhh
Confidence            9987655555443

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=86.30  E-value=13  Score=30.58  Aligned_cols=108  Identities=21%  Similarity=0.296  Sum_probs=62.7

Q ss_pred             hhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHH
Q 017151           56 RTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAE  135 (376)
Q Consensus        56 RtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~vA~AFAERD~slmEaE  135 (376)
                      -.+.++.+|..|+.++.........|.+.....--=|..|...              +.          ||+++. -++ 
T Consensus        14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~q--------------L~----------~E~~~l-~e~-   67 (129)
T 2fxo_A           14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQ--------------VQ----------AEQDNL-ADA-   67 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HH----------HHHHHH-HHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HH----------HHHHHH-HhH-
Confidence            3456788888888887766666655555544433333333322              11          233331 122 


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHH
Q 017151          136 KAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVIN  191 (376)
Q Consensus       136 KaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~  191 (376)
                        .++-+.+...-.+++..+.++++.+.+....|..|+..-.++..+...+.+-|+
T Consensus        68 --EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~le  121 (129)
T 2fxo_A           68 --EERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDID  121 (129)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              244445555556667777777777777777777777777766666665555444

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=86.28  E-value=6.4  Score=32.34  Aligned_cols=66  Identities=18%  Similarity=0.219  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhcccccccccc
Q 017151          146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSF  225 (376)
Q Consensus       146 qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSf  225 (376)
                      ..+.++..++..++..+..++-+|..|...++..+.+-+.-.+-                                    
T Consensus        38 ~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~------------------------------------   81 (131)
T 3tnu_A           38 SEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQ------------------------------------   81 (131)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH------------------------------------
Confidence            45777888888888888888888888888887766655411111                                    


Q ss_pred             cCcchhHhHHHHHHHHHHHHhhHHHH
Q 017151          226 NDTSTSKYISALEDELEKTRSSVENL  251 (376)
Q Consensus       226 n~tStskyisaLEee~e~lr~si~~L  251 (376)
                          ...-|+.||.++..+|..+...
T Consensus        82 ----~q~~i~~lE~eL~~~r~em~~q  103 (131)
T 3tnu_A           82 ----IQEMIGSVEEQLAQLRCEMEQQ  103 (131)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHH
Confidence                2234788999999999887653

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=84.99  E-value=10  Score=40.93  Aligned_cols=30  Identities=33%  Similarity=0.493  Sum_probs=1.5

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 017151           58 AGLEQEIEILKQKIAACARENSNLQEELSE   87 (376)
Q Consensus        58 A~LEQeIE~Lkkkl~~c~rEn~nLQEELsE   87 (376)
                      ..||..|+.|+.+|..-..+|..|++++..
T Consensus       924 ~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~  953 (1080)
T 2dfs_A          924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNN  953 (1080)
T ss_dssp             ---------------------------CHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578888999999999989999999988653

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=83.98  E-value=3.7  Score=33.91  Aligned_cols=29  Identities=31%  Similarity=0.487  Sum_probs=26.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017151           11 ESEALMARIQQLEHERDELRKDIEQLCMQ   39 (376)
Q Consensus        11 ~~esl~aRI~qLEhERDELrKDIEqLCMQ   39 (376)
                      ....|..+|..|+.||+.|++.|+.|=|+
T Consensus        13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~   41 (100)
T 1go4_E           13 EADTLRLKVEELEGERSRLEEEKRMLEAQ   41 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47789999999999999999999988774

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*

Probab=83.28  E-value=9.9  Score=38.08  Aligned_cols=63  Identities=14%  Similarity=0.152  Sum_probs=46.8

Q ss_pred             hhHhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHH
Q 017151          230 TSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRL  292 (376)
Q Consensus       230 tskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~LEk~q~~~d~~i~ngis~L~~  292 (376)
                      .++|-..++..++.|++.++.|-++-.-..++.++|+-.....+++---....|..--..|.+
T Consensus        91 L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~  153 (464)
T 1m1j_B           91 LLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMEL  153 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence            689999999999999999999998888888888888888777766544444333333333333

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=82.77  E-value=6.2  Score=30.56  Aligned_cols=77  Identities=14%  Similarity=0.235  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--------HHhhcCCchH----HHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcc
Q 017151           13 EALMARIQQLEHERDELRKDIEQL--------CMQQAGPSYL----AVATRMHFQRTAGLEQEIEILKQKIAACARENSN   80 (376)
Q Consensus        13 esl~aRI~qLEhERDELrKDIEqL--------CMQQaGpgyl----~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~n   80 (376)
                      ..+..+|.+|+.+..++..=++.|        |.-.-||-||    +-|.-.+-.|...++.+|+.|.+++..+..+=..
T Consensus        23 ~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~  102 (117)
T 2zqm_A           23 QLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKE  102 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666666666655544444        7778888775    4577788999999999999999999888777777


Q ss_pred             hHHHHHHHH
Q 017151           81 LQEELSEAY   89 (376)
Q Consensus        81 LQEELsEAY   89 (376)
                      |+..|-+.+
T Consensus       103 lk~~l~~~~  111 (117)
T 2zqm_A          103 LTAQIQSAL  111 (117)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            776666554

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=82.39  E-value=3.5  Score=32.33  Aligned_cols=54  Identities=24%  Similarity=0.300  Sum_probs=39.4

Q ss_pred             HHHHHHHHHhhhhhhhhcccccchhhhhcccccccccccCcchhHhHHHHHHHHHHHHhhHHHHhh
Q 017151          188 EVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQS  253 (376)
Q Consensus       188 kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQs  253 (376)
                      ++=+.|..+|.-.+.+.+-+-..|.++|-.            +..||..|+++...+...++.|+.
T Consensus        20 ~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~------------A~~YI~~L~~~~~~l~~~~~~L~~   73 (88)
T 1nkp_A           20 ELKRSFFALRDQIPELENNEKAPKVVILKK------------ATAYILSVQAEEQKLISEEDLLRK   73 (88)
T ss_dssp             HHHHHHHHHHTTCGGGTTCTTCCHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445688999987776644445566666633            678999999999998888776553

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=82.31  E-value=39  Score=36.52  Aligned_cols=14  Identities=50%  Similarity=0.835  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHHHHH
Q 017151           25 ERDELRKDIEQLCM   38 (376)
Q Consensus        25 ERDELrKDIEqLCM   38 (376)
                      |..+|++|++.|-.
T Consensus       961 e~~~L~~~l~~le~  974 (1080)
T 2dfs_A          961 ETEKLRSDVERLRM  974 (1080)
T ss_dssp             HHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            33444444444433

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=80.75  E-value=28  Score=30.33  Aligned_cols=121  Identities=17%  Similarity=0.279  Sum_probs=71.8

Q ss_pred             hHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHH
Q 017151           60 LEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKE  139 (376)
Q Consensus        60 LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~vA~AFAERD~slmEaEKaKE  139 (376)
                      +|.+++.-..++.....-...|.++|--+-+--..|----...-.+-...|.++++.+...           -|||   -
T Consensus        26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kL-----------KEAE---~   91 (155)
T 2efr_A           26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKL-----------KEAE---T   91 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH---H
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHH-----------HHHH---H
Confidence            8888888888888888888888888877664433343333444455566777777776543           2222   2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHh
Q 017151          140 KEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIR  197 (376)
Q Consensus       140 ~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR  197 (376)
                      +.+..-..++.++.-+..++-.+...|.-+..++.++..--..   +..+--+||.+-
T Consensus        92 RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~e---l~~~~~~~~~~~  146 (155)
T 2efr_A           92 RAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDK---VEELLSKNYHLE  146 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcccchHHHH
Confidence            2233334555555556666666666666666666665422211   223456777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	376
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	80.54

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.54  E-value=2.4  Score=30.63  Aligned_cols=55  Identities=22%  Similarity=0.276  Sum_probs=37.5

Q ss_pred             HHHHHHHHhhhhhhhhcccccchhhhhcccccccccccCcchhHhHHHHHHHHHHHHhhHHHHhhhh
Q 017151          189 VINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKL  255 (376)
Q Consensus       189 Vi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQskL  255 (376)
                      +=+.|.++|.--|.+.+-+--.|.+||-.            +.+||..|++++..+...++.|+...
T Consensus        21 in~~f~~Lr~llP~~~~~~k~sK~~iL~~------------A~~yI~~L~~~~~~l~~~~~~l~~~~   75 (88)
T d1nkpa_          21 LKRSFFALRDQIPELENNEKAPKVVILKK------------ATAYILSVQAEEQKLISEEDLLRKRR   75 (88)
T ss_dssp             HHHHHHHHHTTCGGGTTCTTCCHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCCCccCHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33567788866655533333346666543            78999999999999988877776543