Citrus Sinensis ID: 017154

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370------
MGENMEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASGEKPSKKKKSK
cccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHccEEEEEccccEEEEEcccccccHHHHHHHHHHHHHHHccccHHHHHHHHccccEEEEEEcccccccHHHHHHHHHcccccccHHHHHHHHHHccEEEEEccEEEEEEccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccHHHHHcHHHHHHHccccccccccccccccccccccccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccc
ccccccccccccccccccccccccccccccccccccccHccccccccHHcHHHHHcHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEccEEEEcccccccHHHHHHHHHHHHHHHccccHHHHHHHHcccccEEEEEEccHcccHHHHHHHHHHHcccccHHHHHHHHHHccEEEEEcccEEEcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHcccHHHHcHHHHHHcHcccccccccccccccccccccccHHHHHHHccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHHccccHHHHEEccccccccccccc
mgenmektvnkkhkgkhdkpkpwdedpnidhwkvekfdpfwneggmlevssfstlFPQYREKYLQEAWPMVKGALKEYGVSCELNLvegsmtvsttrktrdpyiIVKARDLIRLlsrsvpapqaikILDDEMQCDIIKIGNLVRNKERFVKRrqhlvgpnsstlKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCmqnkmhpvyHIKILMVKKelekdpalanenwdrflpkfkkknvkqkkvkskekkpytpfppppqpskidkLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKrkrdaafippeepsrqnsceaedkTNDVAAMAKSLKEKAKKLRKQKFaeninpeeyiaasgekpskkkksk
mgenmektvnkkhkgkhdkpkpwdedpnidHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVegsmtvsttrktrdpyiIVKARDLIRLLSRSVPAPQaikilddemqcDIIKIGNLVRNKERFvkrrqhlvgpnsstlkALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALAnenwdrflpkfkkknvkqkkvkskekkpytpfppppqpskidKLLESGEYFLSerkkeskkwqEKQEKQaektaenkrkrdaafippeepsrqnsceaedKTNDVAAMAKSLKEKAKKlrkqkfaeninpeeyiaasgekpskkkksk
MGENMEKTVNkkhkgkhdkpkpWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPkfkkknvkqkkvkskekkpytpfppppqpskidkLLESGEYFLSerkkeskkwqekqekqaektaenkRKRDAAFIPPEEPSRQNSCEAEDKTNDVaamakslkekakklrkqkfaENINPEEYIAASGEkpskkkksk
****************************IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFL********************************************************************************************************************************************
***************************************************FSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKIL****************WDRF*********************************************************************************************************************************************
**********************WDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKK*******************PPPPQPSKIDKLLESGEYFLS***************************DAAFIPP************DKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAA************
**********************WDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK*********KPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKK*********************A********************DVAAMAKSLKEKAKKLRKQ**************************
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MGENMEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKxxxxxxxxxxxxxxxxxxxxxKFAENINPEEYIAASGEKPSKKKKSK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query376 2.2.26 [Sep-21-2011]
O74777327 KRR1 small subunit proces yes no 0.821 0.944 0.636 1e-105
E7QBZ1316 KRR1 small subunit proces N/A no 0.795 0.946 0.633 1e-104
E7LRT8316 KRR1 small subunit proces N/A no 0.795 0.946 0.633 1e-104
P25586316 KRR1 small subunit proces yes no 0.795 0.946 0.633 1e-104
C8Z430316 KRR1 small subunit proces N/A no 0.795 0.946 0.633 1e-104
B5VEQ2316 KRR1 small subunit proces N/A no 0.795 0.946 0.633 1e-104
B3LU25316 KRR1 small subunit proces N/A no 0.795 0.946 0.633 1e-104
B4N0P7347 KRR1 small subunit proces N/A no 0.803 0.870 0.574 3e-95
Q13601381 KRR1 small subunit proces yes no 0.861 0.850 0.543 3e-95
Q8BGA5380 KRR1 small subunit proces yes no 0.813 0.805 0.564 6e-95
>sp|O74777|KRR1_SCHPO KRR1 small subunit processome component homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mis3 PE=3 SV=1 Back     alignment and function desciption
 Score =  380 bits (977), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/314 (63%), Positives = 247/314 (78%), Gaps = 5/314 (1%)

Query: 9   VNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAW 68
           VNK  + + DKP  WD D +IDHWK+E F    ++   LE SSF+TLFP+YREKYL+E W
Sbjct: 14  VNKNKRYRRDKP--WDTD-DIDHWKIEPFTKDDSKESFLEESSFATLFPKYREKYLREVW 70

Query: 69  PMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKIL 128
           P V  AL ++G++C L+LVEGSMTV TTRKT DPY I+ ARDLI+LL+RSVP PQA+KI+
Sbjct: 71  PHVTRALDKFGITCVLDLVEGSMTVKTTRKTFDPYSILDARDLIKLLARSVPFPQAVKIM 130

Query: 129 DDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSF 188
            D + CDIIKIGN++RNKERFVKRRQ L+G N  TLKALE+LT CYILVQG TVA MG +
Sbjct: 131 QDGVACDIIKIGNILRNKERFVKRRQRLIGTNGQTLKALELLTQCYILVQGTTVAVMGGY 190

Query: 189 KGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK 248
           KGLK+VRRIVEDCM N +HP+YHIK LM+K+EL KDP LANE+WDRFLP+FKK+NV ++K
Sbjct: 191 KGLKEVRRIVEDCMHN-IHPIYHIKELMIKRELAKDPTLANESWDRFLPQFKKRNVARRK 249

Query: 249 -VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 307
             K +E K YTPFPP   PSK+D  +ESGEYFL + +KE KK  EK+E+Q EK  E +++
Sbjct: 250 PAKIRETKEYTPFPPAQPPSKLDLEIESGEYFLKKEEKERKKRAEKKEQQKEKKKEKEKE 309

Query: 308 RDAAFIPPEEPSRQ 321
           R  AFIPPEE S++
Sbjct: 310 RMKAFIPPEESSKK 323
Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
>sp|E7QBZ1|KRR1_YEASZ KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain Zymaflore VL3) GN=KRR1 PE=3 SV=1 Back     alignment and function description
>sp|E7LRT8|KRR1_YEASV KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain VIN 13) GN=KRR1 PE=3 SV=1 Back     alignment and function description
>sp|P25586|KRR1_YEAST KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KRR1 PE=1 SV=1 Back     alignment and function description
>sp|C8Z430|KRR1_YEAS8 KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) GN=KRR1 PE=3 SV=1 Back     alignment and function description
>sp|B5VEQ2|KRR1_YEAS6 KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain AWRI1631) GN=KRR1 PE=3 SV=1 Back     alignment and function description
>sp|B3LU25|KRR1_YEAS1 KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain RM11-1a) GN=KRR1 PE=3 SV=1 Back     alignment and function description
>sp|B4N0P7|KRR1_DROWI KRR1 small subunit processome component homolog OS=Drosophila willistoni GN=dbe PE=3 SV=1 Back     alignment and function description
>sp|Q13601|KRR1_HUMAN KRR1 small subunit processome component homolog OS=Homo sapiens GN=KRR1 PE=1 SV=4 Back     alignment and function description
>sp|Q8BGA5|KRR1_MOUSE KRR1 small subunit processome component homolog OS=Mus musculus GN=Krr1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query376
255544688377 Ribosomal RNA assembly protein mis3, put 0.944 0.941 0.847 1e-164
356501320389 PREDICTED: ribosomal RNA assembly protei 0.968 0.935 0.816 1e-163
359807638389 uncharacterized protein LOC100816856 [Gl 0.968 0.935 0.810 1e-161
224094246379 predicted protein [Populus trichocarpa] 0.973 0.965 0.786 1e-159
357493549424 KRR1 small subunit processome component- 0.906 0.804 0.812 1e-156
218184655395 hypothetical protein OsI_33853 [Oryza sa 0.952 0.906 0.764 1e-156
388504376380 unknown [Medicago truncatula] 0.906 0.897 0.812 1e-156
115482288395 Os10g0452800 [Oryza sativa Japonica Grou 0.952 0.906 0.761 1e-155
449493026379 PREDICTED: KRR1 small subunit processome 0.968 0.960 0.810 1e-155
296083097424 unnamed protein product [Vitis vinifera] 0.957 0.849 0.810 1e-152
>gi|255544688|ref|XP_002513405.1| Ribosomal RNA assembly protein mis3, putative [Ricinus communis] gi|223547313|gb|EEF48808.1| Ribosomal RNA assembly protein mis3, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 301/355 (84%), Positives = 325/355 (91%)

Query: 19  KPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEY 78
           KPKPWDEDPNID WK+EKFDP WNEGGMLEVSSFSTLFPQYREKYLQE WPMVK A+KEY
Sbjct: 17  KPKPWDEDPNIDRWKIEKFDPSWNEGGMLEVSSFSTLFPQYREKYLQEVWPMVKSAIKEY 76

Query: 79  GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIK 138
           GV+CELNLVEGSMTVSTTRKTRDPYIIVKARDLI+LLSRSVPAPQAIKIL DEMQCDIIK
Sbjct: 77  GVACELNLVEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILHDEMQCDIIK 136

Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
           IGNLVR KERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR+IV
Sbjct: 137 IGNLVRKKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRKIV 196

Query: 199 EDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYT 258
           EDC+QNK+HPVYHIKILM+KKELEKDPAL NENWDRFLPKFKKKNVK  KVK KEKKPYT
Sbjct: 197 EDCIQNKLHPVYHIKILMMKKELEKDPALQNENWDRFLPKFKKKNVKHNKVKRKEKKPYT 256

Query: 259 PFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEP 318
           PFPP  QPSK+D+ LESGEYFL+ +KK++KKWQEKQE+QAEKTAENKRKRD AF+PPEE 
Sbjct: 257 PFPPEQQPSKVDRELESGEYFLNNQKKQAKKWQEKQERQAEKTAENKRKRDTAFVPPEEH 316

Query: 319 SRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASGEKPSKKK 373
             Q++ ++EDK NDVAA+A S+K+KAK   K+   ENIN EEYIAASGE P KKK
Sbjct: 317 RDQDAGKSEDKNNDVAAIALSIKKKAKDFGKKNAVENINAEEYIAASGELPKKKK 371

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356501320|ref|XP_003519473.1| PREDICTED: ribosomal RNA assembly protein mis3-like [Glycine max] Back     alignment and taxonomy information
>gi|359807638|ref|NP_001241422.1| uncharacterized protein LOC100816856 [Glycine max] gi|255639399|gb|ACU19995.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|224094246|ref|XP_002310107.1| predicted protein [Populus trichocarpa] gi|222853010|gb|EEE90557.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357493549|ref|XP_003617063.1| KRR1 small subunit processome component-like protein [Medicago truncatula] gi|355518398|gb|AET00022.1| KRR1 small subunit processome component-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|218184655|gb|EEC67082.1| hypothetical protein OsI_33853 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|388504376|gb|AFK40254.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|115482288|ref|NP_001064737.1| Os10g0452800 [Oryza sativa Japonica Group] gi|31432429|gb|AAP54059.1| Ribosomal RNA assembly protein mis3, putative, expressed [Oryza sativa Japonica Group] gi|113639346|dbj|BAF26651.1| Os10g0452800 [Oryza sativa Japonica Group] gi|215687236|dbj|BAG91801.1| unnamed protein product [Oryza sativa Japonica Group] gi|222612935|gb|EEE51067.1| hypothetical protein OsJ_31745 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|449493026|ref|XP_004159171.1| PREDICTED: KRR1 small subunit processome component homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|296083097|emb|CBI22501.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query376
TAIR|locus:2150818391 AT5G08420 [Arabidopsis thalian 0.571 0.549 0.865 9e-111
POMBASE|SPBC25B2.05327 mis3 "rRNA processing protein 0.566 0.651 0.688 6.5e-83
ASPGD|ASPL0000001309358 AN5875 [Emericella nidulans (t 0.566 0.594 0.694 3.6e-82
UNIPROTKB|G4N4Y1320 MGG_06049 "KRR1 small subunit 0.789 0.928 0.542 3.3e-79
SGD|S000000564316 KRR1 "Nucleolar protein requir 0.566 0.674 0.677 9.5e-78
CGD|CAL0001053358 KRR1 [Candida albicans (taxid: 0.566 0.594 0.658 2.5e-77
UNIPROTKB|F1SGD9375 KRR1 "KRR1 small subunit proce 0.550 0.552 0.629 4.1e-73
MGI|MGI:1289274380 Krr1 "KRR1, small subunit (SSU 0.550 0.544 0.625 4.1e-73
UNIPROTKB|Q13601381 KRR1 "KRR1 small subunit proce 0.550 0.543 0.629 6.7e-73
UNIPROTKB|Q3B7L9382 KRR1 "KRR1 small subunit proce 0.550 0.541 0.629 1.1e-72
TAIR|locus:2150818 AT5G08420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 992 (354.3 bits), Expect = 9.0e-111, Sum P(2) = 9.0e-111
 Identities = 186/215 (86%), Positives = 200/215 (93%)

Query:    23 WDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSC 82
             WD+DPNID W +EKFDP WN  GM E S+FSTLFPQYREKYLQE WP V+ ALKEYGV+C
Sbjct:    30 WDDDPNIDRWTIEKFDPAWNPTGMTETSTFSTLFPQYREKYLQECWPRVESALKEYGVAC 89

Query:    83 ELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNL 142
             +LNLVEGSMTVSTTRKTRDPYIIVKARDLI+LLSRSVPAPQAIKIL+DE+QCDIIKIGNL
Sbjct:    90 KLNLVEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILEDEVQCDIIKIGNL 149

Query:   143 VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCM 202
             VRNKERFVKRRQ LVGPNSSTLKALEILT CYILVQG+TVAAMG FKGLKQ+RRIVEDC+
Sbjct:   150 VRNKERFVKRRQRLVGPNSSTLKALEILTNCYILVQGSTVAAMGPFKGLKQLRRIVEDCV 209

Query:   203 QNKMHPVYHIKILMVKKELEKDPALANENWDRFLP 237
             QN MHPVYHIK LM+KKELEKDPALANE+WDRFLP
Sbjct:   210 QNIMHPVYHIKTLMMKKELEKDPALANESWDRFLP 244
GO:0003723 "RNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
POMBASE|SPBC25B2.05 mis3 "rRNA processing protein Mis3" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ASPGD|ASPL0000001309 AN5875 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|G4N4Y1 MGG_06049 "KRR1 small subunit processome component" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
SGD|S000000564 KRR1 "Nucleolar protein required for rRNA synthesis and ribosomal assembly" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
CGD|CAL0001053 KRR1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|F1SGD9 KRR1 "KRR1 small subunit processome component" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1289274 Krr1 "KRR1, small subunit (SSU) processome component, homolog (yeast)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q13601 KRR1 "KRR1 small subunit processome component homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q3B7L9 KRR1 "KRR1 small subunit processome component homolog" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9VPU8KRR1_DROMENo assigned EC number0.54980.81910.8927yesno
B4LTY6KRR1_DROVINo assigned EC number0.53110.87760.9620N/Ano
Q3B7L9KRR1_BOVINNo assigned EC number0.58270.76320.7513yesno
P25586KRR1_YEASTNo assigned EC number0.63390.79520.9462yesno
O74777KRR1_SCHPONo assigned EC number0.63690.82180.9449yesno
B4G9L6KRR1_DROPENo assigned EC number0.54650.83770.9264N/Ano
B3N899KRR1_DROERNo assigned EC number0.53490.86170.9391N/Ano
Q8BGA5KRR1_MOUSENo assigned EC number0.56450.81380.8052yesno
B4P2Y8KRR1_DROYANo assigned EC number0.54510.80850.8837N/Ano
Q13601KRR1_HUMANNo assigned EC number0.54350.86170.8503yesno
B4N0P7KRR1_DROWINo assigned EC number0.57460.80310.8703N/Ano
Q54UU6KRR1_DICDINo assigned EC number0.57760.72870.7326yesno
B4KF66KRR1_DROMONo assigned EC number0.54510.85100.9302N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query376
COG1094194 COG1094, COG1094, Predicted RNA-binding protein (c 1e-50
TIGR03665172 TIGR03665, arCOG04150, arCOG04150 universal archae 1e-12
PRK13763180 PRK13763, PRK13763, putative RNA-processing protei 2e-12
>gnl|CDD|224019 COG1094, COG1094, Predicted RNA-binding protein (contains KH domains) [General function prediction only] Back     alignment and domain information 
 Score =  167 bits (426), Expect = 1e-50
 Identities = 55/165 (33%), Positives = 90/165 (54%), Gaps = 2/165 (1%)

Query: 45  GMLEVSSFSTLFPQYREKYLQEAWPMVKGALKE-YGVSCELNLVEGSMTVSTTRKTRDPY 103
              E SS +   P+ R   L   W  VK A++E  GV   ++   GS+T+ TTRKT DP 
Sbjct: 3   EFAEKSSEAVKIPKDRIGVLIGKWGEVKKAIEEKTGVKLRIDSKTGSVTIRTTRKTEDPL 62

Query: 104 IIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKER-FVKRRQHLVGPNSS 162
            ++KARD+++ + R  P  +A+K+L+D+   ++I + ++V        + +  ++G    
Sbjct: 63  ALLKARDVVKAIGRGFPPEKALKLLEDDYYLEVIDLKDVVTLSGDHLRRIKGRIIGREGK 122

Query: 163 TLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 207
           T +A+E LTG YI V G TVA +G F+ ++  R  VE  +    H
Sbjct: 123 TRRAIEELTGVYISVYGKTVAIIGGFEQVEIAREAVEMLINGAPH 167

Length = 194
>gnl|CDD|211858 TIGR03665, arCOG04150, arCOG04150 universal archaeal KH domain protein Back     alignment and domain information
>gnl|CDD|237494 PRK13763, PRK13763, putative RNA-processing protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 376
KOG2874356 consensus rRNA processing protein [Translation, ri 100.0
COG1094194 Predicted RNA-binding protein (contains KH domains 100.0
KOG3273252 consensus Predicted RNA-binding protein Pno1p inte 100.0
TIGR03665172 arCOG04150 arCOG04150 universal archaeal KH domain 100.0
PRK13763180 putative RNA-processing protein; Provisional 100.0
TIGR03319514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 98.88
PRK00106535 hypothetical protein; Provisional 98.83
PRK12704520 phosphodiesterase; Provisional 98.69
cd02395120 SF1_like-KH Splicing factor 1 (SF1) K homology RNA 98.53
smart0032269 KH K homology RNA-binding domain. 98.32
PRK12705508 hypothetical protein; Provisional 98.22
PF0001360 KH_1: KH domain syndrome, contains KH motifs.; Int 98.14
cd0239361 PNPase_KH Polynucleotide phosphorylase (PNPase) K 98.08
cd0239462 vigilin_like_KH K homology RNA-binding domain_vigi 98.06
cd0010564 KH-I K homology RNA-binding domain, type I. KH bin 98.03
cd0239665 PCBP_like_KH K homology RNA-binding domain, PCBP_l 97.36
KOG1676 600 consensus K-homology type RNA binding proteins [RN 97.22
PF1301443 KH_3: KH domain 97.17
TIGR03665172 arCOG04150 arCOG04150 universal archaeal KH domain 96.88
PRK13763180 putative RNA-processing protein; Provisional 96.81
KOG1588259 consensus RNA-binding protein Sam68 and related KH 96.34
KOG2193584 consensus IGF-II mRNA-binding protein IMP, contain 95.99
COG5176269 MSL5 Splicing factor (branch point binding protein 95.47
KOG0119 554 consensus Splicing factor 1/branch point binding p 95.2
COG1847208 Jag Predicted RNA-binding protein [General functio 94.96
PRK04163235 exosome complex RNA-binding protein Rrp4; Provisio 94.73
TIGR02696719 pppGpp_PNP guanosine pentaphosphate synthetase I/p 94.72
KOG1676 600 consensus K-homology type RNA binding proteins [RN 94.68
TIGR03591684 polynuc_phos polyribonucleotide nucleotidyltransfe 94.58
PF1308373 KH_4: KH domain; PDB: 3GKU_B. 94.14
PRK0106478 hypothetical protein; Provisional 91.77
PRK0282177 hypothetical protein; Provisional 91.47
cd0213461 NusA_KH NusA_K homology RNA-binding domain (KH). N 90.96
cd0241477 jag_KH jag_K homology RNA-binding domain. The KH d 90.87
KOG2193584 consensus IGF-II mRNA-binding protein IMP, contain 90.82
PRK0046875 hypothetical protein; Provisional 90.42
PLN00207891 polyribonucleotide nucleotidyltransferase; Provisi 89.98
COG1185692 Pnp Polyribonucleotide nucleotidyltransferase (pol 88.92
cd0240968 KH-II KH-II (K homology RNA-binding domain, type I 87.01
KOG2190 485 consensus PolyC-binding proteins alphaCP-1 and rel 86.63
KOG2191402 consensus RNA-binding protein NOVA1/PASILLA and re 86.37
COG183776 Predicted RNA-binding protein (contains KH domain) 84.96
COG1097239 RRP4 RNA-binding protein Rrp4 and related proteins 84.88
KOG2814345 consensus Transcription coactivator complex, P50 c 84.21
PRK11824693 polynucleotide phosphorylase/polyadenylase; Provis 83.88
COG1702348 PhoH Phosphate starvation-inducible protein PhoH, 83.51
COG1094194 Predicted RNA-binding protein (contains KH domains 81.11
>KOG2874 consensus rRNA processing protein [Translation, ribosomal structure and biogenesis; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=6.2e-124  Score=893.33  Aligned_cols=336  Identities=66%  Similarity=1.047  Sum_probs=312.7

Q ss_pred             cccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCcceeeeeeeecCcchHHHHHhhhHHHHHHHhhcceEEEEEcCcCe
Q 017154           11 KKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGS   90 (376)
Q Consensus        11 ~~~~~~~~~~kpwd~~~~id~wk~~~f~~edn~~g~~eessf~~lfPkyRe~yLKe~W~~I~k~Le~~~l~i~lDl~eGs   90 (376)
                      .+++.+|..++|||++++||+|+++.|+++|||+||+|+|||+||||+|||+||+++|+.|.++|++|+|.|.|||.+|+
T Consensus        18 ~~~k~~~e~~k~~~~~~~~d~wki~~Fs~edn~~g~~EeSSfatlFPKYREkYlke~wp~v~raL~e~~i~c~lDL~egs   97 (356)
T KOG2874|consen   18 ENKKPKPETDKPWDPDDNIDMWKIEKFSKEDNPHGFLEESSFATLFPKYREKYLKECWPLVERALDEHHIKCVLDLVEGS   97 (356)
T ss_pred             hhcccccccCCCCCCCCcchhhcccccCcccCccchhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHhcCcceEEeeccce
Confidence            35677889999999998899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCCChhHHHhHHHHHHHHhcCCChHHHHhhhccCceeEEEeccccccCchhhhhhhceecCCCCchHHHHHHH
Q 017154           91 MTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEIL  170 (376)
Q Consensus        91 V~V~Tt~kT~DP~~IlKArD~IkAiaRGF~~EqAlkLLeDDi~~dIIdI~~~v~nke~f~RrrgRIIG~~GkTkkaIE~L  170 (376)
                      |+|+||++|||||+|++|||||+++|||||++||++||+||++||||+|+++|+|+++|++||+||||+||.|++|||+|
T Consensus        98 m~V~TtRkT~DPyIiikArdlIKLlaRsVp~eqAvkiLqDev~CdiIkIgn~V~nkerFvKRRqRLiGpng~TLKAlelL  177 (356)
T KOG2874|consen   98 MTVKTTRKTRDPYIIIKARDLIKLLARSVPFEQAVKILQDEVACDIIKIGNLVRNKERFVKRRQRLIGPNGSTLKALELL  177 (356)
T ss_pred             eEEeecccccCceeeeeHHHHHHHHHcCCCHHHHHHHHhhccceeeeehhhhhccHHHHHHHHHHhcCCCchhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCceEEEeCcEEEEecCCccHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhhcCcccccccccccchhhhcccccccccc
Q 017154          171 TGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK  250 (376)
Q Consensus       171 T~~~I~V~G~TVsIIG~~~~IkiAR~AIe~LI~Gs~HpVY~ikelmiKreL~kd~~l~~e~W~rflP~fkk~~~~~~k~~  250 (376)
                      |+|||+|||+|||+||+|.||++||++|+|||+| +||||||++|||||||++||+|+|||||||||+|+++|++++|++
T Consensus       178 T~CYilVqG~TVsaiGpfkGlkevr~IV~DcM~N-iHPiY~IK~LmiKRel~kd~~l~ne~W~rfLP~fkkknv~k~K~~  256 (356)
T KOG2874|consen  178 TNCYILVQGNTVSAIGPFKGLKEVRKIVEDCMKN-IHPIYNIKTLMIKRELAKDPELANEDWSRFLPQFKKKNVKKRKPK  256 (356)
T ss_pred             hhcEEEeeCcEEEeecCcchHHHHHHHHHHHHhc-cchHHHHHHHHHHHHhhcChhhccccHHHHhHHhhhhhhhhcccc
Confidence            9999999999999999999999999999999999 999999999999999999999999999999999999999999887


Q ss_pred             c-cCCCCCCCCCCCCCCchhhhhhhccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCcccccc
Q 017154          251 S-KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDK  329 (376)
Q Consensus       251 ~-~~kk~~tpfpp~~~~~k~d~~~esgeyfl~~~~k~~~~~~~~~~~q~~~~~~~~~~r~~~~~~p~e~~~~~~~~~~~~  329 (376)
                      + +.||+||||||+|++||||+|||||||||+++++++++++|+.++|+++..+++++|.++|+||+|.+.....+...+
T Consensus       257 K~~~kk~ytpfPp~q~~sKiD~eleSGEYFl~~~~k~~kK~~e~~Ekq~e~~~er~~~r~k~fi~peE~~~~~~~~~~~~  336 (356)
T KOG2874|consen  257 KVKGKKEYTPFPPAQPPSKIDKELESGEYFLRDEEKSRKKMQEKKEKQAEKRKERQEERMKAFIPPEEESRKPSNKKKEA  336 (356)
T ss_pred             cccCCCCCCCCCCCcCcchhhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccccccccCCCC
Confidence            6 458999999999999999999999999999999999999999999999999999999999999999876442222222


Q ss_pred             cchHHHHHHHHHHHHHHH
Q 017154          330 TNDVAAMAKSLKEKAKKL  347 (376)
Q Consensus       330 ~~~~~~~~~~~k~k~~~~  347 (376)
                      .........+++.|++++
T Consensus       337 ~~~~~i~~~~~k~k~~ka  354 (356)
T KOG2874|consen  337 STETKIDVLSIKAKLKKA  354 (356)
T ss_pred             CCcchHHHHHHHHhhhhc
Confidence            222222233456666554

>COG1094 Predicted RNA-binding protein (contains KH domains) [General function prediction only] Back     alignment and domain information
>KOG3273 consensus Predicted RNA-binding protein Pno1p interacting with Nob1p and involved in 26S proteasome assembly [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein Back     alignment and domain information
>PRK13763 putative RNA-processing protein; Provisional Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>cd02395 SF1_like-KH Splicing factor 1 (SF1) K homology RNA-binding domain (KH) Back     alignment and domain information
>smart00322 KH K homology RNA-binding domain Back     alignment and domain information
>PRK12705 hypothetical protein; Provisional Back     alignment and domain information
>PF00013 KH_1: KH domain syndrome, contains KH motifs Back     alignment and domain information
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH) Back     alignment and domain information
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like Back     alignment and domain information
>cd00105 KH-I K homology RNA-binding domain, type I Back     alignment and domain information
>cd02396 PCBP_like_KH K homology RNA-binding domain, PCBP_like Back     alignment and domain information
>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification] Back     alignment and domain information
>PF13014 KH_3: KH domain Back     alignment and domain information
>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein Back     alignment and domain information
>PRK13763 putative RNA-processing protein; Provisional Back     alignment and domain information
>KOG1588 consensus RNA-binding protein Sam68 and related KH domain proteins [RNA processing and modification] Back     alignment and domain information
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only] Back     alignment and domain information
>COG5176 MSL5 Splicing factor (branch point binding protein) [RNA processing and modification] Back     alignment and domain information
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>COG1847 Jag Predicted RNA-binding protein [General function prediction only] Back     alignment and domain information
>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional Back     alignment and domain information
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase Back     alignment and domain information
>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification] Back     alignment and domain information
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase Back     alignment and domain information
>PF13083 KH_4: KH domain; PDB: 3GKU_B Back     alignment and domain information
>PRK01064 hypothetical protein; Provisional Back     alignment and domain information
>PRK02821 hypothetical protein; Provisional Back     alignment and domain information
>cd02134 NusA_KH NusA_K homology RNA-binding domain (KH) Back     alignment and domain information
>cd02414 jag_KH jag_K homology RNA-binding domain Back     alignment and domain information
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only] Back     alignment and domain information
>PRK00468 hypothetical protein; Provisional Back     alignment and domain information
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional Back     alignment and domain information
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd02409 KH-II KH-II (K homology RNA-binding domain, type II) Back     alignment and domain information
>KOG2190 consensus PolyC-binding proteins alphaCP-1 and related KH domain proteins [RNA processing and modification; General function prediction only] Back     alignment and domain information
>KOG2191 consensus RNA-binding protein NOVA1/PASILLA and related KH domain proteins [RNA processing and modification; General function prediction only] Back     alignment and domain information
>COG1837 Predicted RNA-binding protein (contains KH domain) [General function prediction only] Back     alignment and domain information
>COG1097 RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2814 consensus Transcription coactivator complex, P50 component (LigT RNA ligase/phosphodiesterase family) [Transcription] Back     alignment and domain information
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional Back     alignment and domain information
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] Back     alignment and domain information
>COG1094 Predicted RNA-binding protein (contains KH domains) [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query376
2e3u_A219 Crystal Structure Analysis Of Dim2p From Pyrococcus 1e-08
>pdb|2E3U|A Chain A, Crystal Structure Analysis Of Dim2p From Pyrococcus Horikoshii Ot3 Length = 219 Back     alignment and structure 
Iteration: 1

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 76/145 (52%), Gaps = 2/145 (1%)
Query: 89  GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKER 148
           G + +++T++T DP  + KARD++  + R     +A ++L++    +II + +++   E+
Sbjct: 74  GEVWITSTKETEDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEYLEIINLTDIIIGNEK 133
Query: 149 --FVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKM 206
               + R  ++G    T + +E ++G  + V G TVA +G+   ++  +  +E   +   
Sbjct: 134 NALPRVRGRIIGRKGRTRQIIEEMSGASVSVYGKTVAIIGNPIQIEIAKTAIEKLARGSP 193
Query: 207 HPVYHIKILMVKKELEKDPALANEN 231
           H   +  +   KK+LE + A+  EN
Sbjct: 194 HGSVYRYLERRKKDLELEGAMYYEN 218

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query376
1tua_A191 Hypothetical protein APE0754; structural genomics, 3e-53
2e3u_A219 PH-DIM2P, hypothetical protein PH1566; PRE-ribosom 4e-53
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 3e-04
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1 Length = 191 Back     alignment and structure
 Score =  173 bits (440), Expect = 3e-53
 Identities = 31/181 (17%), Positives = 79/181 (43%), Gaps = 4/181 (2%)

Query: 56  FPQYREKYLQEAWPMVKGALKE-YGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRL 114
               R   +      VK  +    G    ++     + V    +   P  ++KA ++++ 
Sbjct: 10  VKPERLGAVIGPRGEVKAEIMRRTGTVITVDTENSMVIVEPEAEGIPPVNLMKAAEVVKA 69

Query: 115 LSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR-RQHLVGPNSSTLKALEILTGC 173
           +S   P  +A ++L+++    ++ +  +V + +  +KR +  ++G      + +E +T  
Sbjct: 70  ISLGFPPEKAFRLLEEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDT 129

Query: 174 YILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWD 233
           YI V    VA +G ++     ++ +E   + +MH   +  +  + +E+++   L  + W 
Sbjct: 130 YINVGEYEVAIIGDYERAMAAKQAIEMLAEGRMHSTVYRHLERIMREIKRRERL--KMWA 187

Query: 234 R 234
           R
Sbjct: 188 R 188
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B Length = 219 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query376
1tua_A191 Hypothetical protein APE0754; structural genomics, 100.0
2e3u_A219 PH-DIM2P, hypothetical protein PH1566; PRE-ribosom 100.0
2jvz_A164 KH type-splicing, FAR upstream element-binding pro 98.99
1j4w_A174 FUSE binding protein; single-stranded DNA binding 98.91
2anr_A178 Neuro-oncological ventral antigen 1; protein-RNA c 98.9
3krm_A163 Insulin-like growth factor 2 mRNA-binding protein 98.85
2jzx_A160 Poly(RC)-binding protein 2; PCBP2, KH domains, RNA 98.65
1dtj_A76 RNA-binding neurooncological ventral antigen 2; KH 98.41
1ec6_A87 RNA-binding protein NOVA-2; KH domain, alpha-beta 98.34
2opv_A85 KHSRP protein; KH domain, RNA binding protein, KSR 98.31
1x4n_A92 FAR upstream element binding protein 1; KH domain, 98.28
2ctm_A95 Vigilin; K homology type I domain, RNA-binding, ce 98.26
2hh2_A107 KH-type splicing regulatory protein; KH-RNA bindin 98.26
2p2r_A76 Poly(RC)-binding protein 2; protein-DNA complex, R 98.25
1k1g_A131 SF1-BO isoform; splicing, branch point sequence, p 98.24
1x4m_A94 FAR upstream element binding protein 1; KH domain, 98.2
2bl5_A140 MGC83862 protein, quaking protein; STAR proteins, 98.19
1zzk_A82 Heterogeneous nuclear ribonucleoprotein K; KH domi 98.19
1vig_A71 Vigilin; RNA-binding protein, ribonucleoprotein; N 98.18
1we8_A104 Tudor and KH domain containing protein; structural 98.15
2yqr_A119 KIAA0907 protein; structure genomics, KH domain, s 98.11
2qnd_A144 FMR1 protein; KH domain, eukaryotic KH domains, ta 98.11
1j5k_A89 Heterogeneous nuclear ribonucleoprotein K; single- 98.11
1wvn_A82 Poly(RC)-binding protein 1; KH domain, RNA binding 98.09
2ctk_A104 Vigilin; K homology type I domain, RNA-binding, ce 98.08
2ctl_A97 Vigilin; K homology type I domain, RNA-binding, ce 98.02
2hh3_A106 KH-type splicing regulatory protein; KH-RNA bindin 98.01
2axy_A73 Poly(RC)-binding protein 2; protein-DNA complex, D 97.98
2cte_A94 Vigilin; K homology type I domain, RNA-binding, ce 97.9
2dgr_A83 Ring finger and KH domain-containing protein 1; st 97.86
2jvz_A164 KH type-splicing, FAR upstream element-binding pro 97.58
2jzx_A160 Poly(RC)-binding protein 2; PCBP2, KH domains, RNA 97.55
1j4w_A174 FUSE binding protein; single-stranded DNA binding 97.41
2anr_A178 Neuro-oncological ventral antigen 1; protein-RNA c 97.4
2ctj_A95 Vigilin; K homology type I domain, RNA-binding, ce 97.3
3krm_A163 Insulin-like growth factor 2 mRNA-binding protein 97.29
2cpq_A91 FragIle X mental retardation syndrome related prot 96.89
2ctf_A102 Vigilin; K homology type I domain, RNA-binding, ce 96.63
3u1k_A630 Polyribonucleotide nucleotidyltransferase 1, MITO; 96.29
2e3u_A219 PH-DIM2P, hypothetical protein PH1566; PRE-ribosom 95.6
3n89_A376 Defective in GERM LINE development protein 3, ISO; 95.08
3n89_A376 Defective in GERM LINE development protein 3, ISO; 94.12
4aid_A726 Polyribonucleotide nucleotidyltransferase; transfe 92.23
3v69_A140 Protein filia; RNA-binding, embryogenesis, KH doma 91.8
1tua_A191 Hypothetical protein APE0754; structural genomics, 91.6
2opv_A85 KHSRP protein; KH domain, RNA binding protein, KSR 89.64
3gku_A225 Probable RNA-binding protein; APC21302, clostridiu 89.5
2cpq_A91 FragIle X mental retardation syndrome related prot 88.27
1dtj_A76 RNA-binding neurooncological ventral antigen 2; KH 86.23
2cte_A94 Vigilin; K homology type I domain, RNA-binding, ce 84.31
2p2r_A76 Poly(RC)-binding protein 2; protein-DNA complex, R 80.56
1ec6_A87 RNA-binding protein NOVA-2; KH domain, alpha-beta 80.18
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1 Back     alignment and structure
Probab=100.00  E-value=2.8e-52  Score=380.54  Aligned_cols=171  Identities=16%  Similarity=0.297  Sum_probs=165.2

Q ss_pred             eeeecCcchHHHHHhhhHHHHHHH-hhcceEEEEEcCcCeEEEEcCCCCCChhHHHhHHHHHHHHhcCCChHHHHhhhcc
Q 017154           52 FSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD  130 (376)
Q Consensus        52 f~~lfPkyRe~yLKe~W~~I~k~L-e~~~l~i~lDl~eGsV~V~Tt~kT~DP~~IlKArD~IkAiaRGF~~EqAlkLLeD  130 (376)
                      +.++||+||..||+..|+.+++.| +++++.|+||+.+|+|+|+||+.|+||++++||+|||+||+|||++++|++||+|
T Consensus         6 ~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~~e~A~~Ll~D   85 (191)
T 1tua_A            6 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPPEKAFRLLEE   85 (191)
T ss_dssp             EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEETTTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCHHHHGGGGST
T ss_pred             eEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHHhhhcccC
Confidence            579999999999999999999999 5699999999999999999999999999999999999999999999999999999


Q ss_pred             CceeEEEecccc-ccCchhhhhhhceecCCCCchHHHHHHHhCceEEEeCcEEEEecCCccHHHHHHHHHHHhcCCCC-c
Q 017154          131 EMQCDIIKIGNL-VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH-P  208 (376)
Q Consensus       131 Di~~dIIdI~~~-v~nke~f~RrrgRIIG~~GkTkkaIE~LT~~~I~V~G~TVsIIG~~~~IkiAR~AIe~LI~Gs~H-p  208 (376)
                      |++||+|+|+++ ++|++||+|++|||||++|+|+++||++|||||+|+|+||+|||+|+++++||+|||+||.|++| +
T Consensus        86 d~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~~~~v~i~G~~~~i~~Ar~~i~~li~g~~h~~  165 (191)
T 1tua_A           86 DQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGEYEVAIIGDYERAMAAKQAIEMLAEGRMHST  165 (191)
T ss_dssp             TEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECSSEEEEEEEHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             cceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEcCCEEEEEeChHHHHHHHHHHHHHHcCCCchh
Confidence            999999999999 68999999999999999999999999999999999999999999999999999999999999999 5


Q ss_pred             hhHHHHHHHHHhhhc
Q 017154          209 VYHIKILMVKKELEK  223 (376)
Q Consensus       209 VY~ikelmiKreL~k  223 (376)
                      ||++++.+ ++||..
T Consensus       166 vy~~~~~~-~~~~k~  179 (191)
T 1tua_A          166 VYRHLERI-MREIKR  179 (191)
T ss_dssp             HHHHHHHH-HHHHHH
T ss_pred             HHHHHHHH-HHHHHH
Confidence            99999999 677743
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B Back     alignment and structure
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens} Back     alignment and structure
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1 Back     alignment and structure
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A* Back     alignment and structure
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens} Back     alignment and structure
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A Back     alignment and structure
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens} Back     alignment and structure
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A Back     alignment and structure
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens} Back     alignment and structure
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 Back     alignment and structure
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1 Back     alignment and structure
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A Back     alignment and structure
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A Back     alignment and structure
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1 Back     alignment and structure
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A Back     alignment and structure
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A Back     alignment and structure
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A* Back     alignment and structure
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens} Back     alignment and structure
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1 Back     alignment and structure
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A* Back     alignment and structure
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens} Back     alignment and structure
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens} Back     alignment and structure
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B Back     alignment and structure
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans} Back     alignment and structure
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans} Back     alignment and structure
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A Back     alignment and structure
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus} Back     alignment and structure
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1 Back     alignment and structure
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens} Back     alignment and structure
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940} Back     alignment and structure
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A Back     alignment and structure
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens} Back     alignment and structure
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 376
d1tuaa2104 d.51.1.1 (A:85-188) Hypothetical protein APE0754 { 4e-22
>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]} Length = 104 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Hypothetical protein APE0754
species: Aeropyrum pernix [TaxId: 56636]

 Score = 87.8 bits (218), Expect = 4e-22
 Identities = 21/102 (20%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 135 DIIKIGNLVRNKERFVKR-RQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQ 193
            ++ +  +V + +  +KR +  ++G      + +E +T  YI V    VA +G ++    
Sbjct: 5   VVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGEYEVAIIGDYERAMA 64

Query: 194 VRRIVEDCMQNKMHP-VYHIKILMVKKELEKDPALANENWDR 234
            ++ +E   + +MH  VY   +  + +E+++   L  + W R
Sbjct: 65  AKQAIEMLAEGRMHSTVYRH-LERIMREIKRRERL--KMWAR 103

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query376
d1tuaa2104 Hypothetical protein APE0754 {Aeropyrum pernix [Ta 99.94
d1tuaa184 Hypothetical protein APE0754 {Aeropyrum pernix [Ta 99.11
d2ba0a384 Exosome complex RNA-binding protein 1, ECR1 {Archa 98.52
d2z0sa287 Exosome complex RNA-binding protein 1, ECR1 {Aerop 98.26
d1j4wa271 Far upstream binding element, FBP {Human (Homo sap 98.12
d2ctma181 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 98.11
d2ctla184 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 98.05
d2je6i369 Exosome complex RNA-binding protein 1, ECR1 {Sulfo 98.05
d1viga_71 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 98.04
d1zzka175 HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} 98.01
d1x4na179 Far upstream binding element, FBP {Mouse (Mus musc 98.01
d1j4wa174 Far upstream binding element, FBP {Human (Homo sap 98.0
d1x4ma181 Far upstream binding element, FBP {Mouse (Mus musc 98.0
d1dtja_74 Neuro-oncological ventral antigen 2, nova-2, KH3 { 97.99
d1wvna170 Poly(RC)-binding protein 1 {Human (Homo sapiens) [ 97.9
d2ctea181 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 97.88
d1k1ga_122 RNA splicing factor 1 {Human (Homo sapiens) [TaxId 97.86
d2axya171 Poly(RC)-binding protein 2 {Human (Homo sapiens) [ 97.85
d1we8a_104 Tudor and KH domain containing protein, Tdrkh {Mou 97.84
d2ctka191 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 97.83
d2ctja182 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 97.67
d2cpqa178 Fragile X mental retardation syndrome related prot 97.64
d2bl5a1134 Quaking protein A (Xqua) {African clawed frog (Xen 97.64
d1tuaa184 Hypothetical protein APE0754 {Aeropyrum pernix [Ta 97.45
d2ctfa190 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 97.42
d1e3ha454 Polynucleotide phosphorylase/guanosine pentaphosph 96.8
d2je6i369 Exosome complex RNA-binding protein 1, ECR1 {Sulfo 90.78
d2ja9a285 Ribosomal RNA-processing protein 40, RRP40 {Saccha 89.91
d2z0sa287 Exosome complex RNA-binding protein 1, ECR1 {Aerop 87.22
d2cpqa178 Fragile X mental retardation syndrome related prot 86.8
d2ba0a384 Exosome complex RNA-binding protein 1, ECR1 {Archa 84.95
>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Hypothetical protein APE0754
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.94  E-value=4.3e-28  Score=201.23  Aligned_cols=101  Identities=19%  Similarity=0.406  Sum_probs=92.9

Q ss_pred             CceeEEEeccccccCc-hhhhhhhceecCCCCchHHHHHHHhCceEEEeCcEEEEecCCccHHHHHHHHHHHhcCCCCc-
Q 017154          131 EMQCDIIKIGNLVRNK-ERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHP-  208 (376)
Q Consensus       131 Di~~dIIdI~~~v~nk-e~f~RrrgRIIG~~GkTkkaIE~LT~~~I~V~G~TVsIIG~~~~IkiAR~AIe~LI~Gs~Hp-  208 (376)
                      |++|+||||++++++. +++.|.+|||||++|+|+++||.+|||+|.|+|+||+|+|+++++..|+++|++|+.|..|+ 
T Consensus         1 d~~l~iidi~~~~~~~~~~l~R~~GrIIG~gGktik~Ie~~Tg~~I~I~d~~v~iig~~e~i~~A~~~Ie~li~~~e~g~   80 (104)
T d1tuaa2           1 DQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGEYEVAIIGDYERAMAAKQAIEMLAEGRMHST   80 (104)
T ss_dssp             TEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECSSEEEEEEEHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             CceEEEEEHHHhhcccHHHHHHHhcceeCCCcHHHHHHHHHHCCeEEEeCCeEEEEECchhHHHHHHHHHHHHcCCCccH
Confidence            6899999999999854 56677799999999999999999999999999999999999999999999999999998887 


Q ss_pred             hhHHHHHHHHHhhhcCcccccccccc
Q 017154          209 VYHIKILMVKKELEKDPALANENWDR  234 (376)
Q Consensus       209 VY~ikelmiKreL~kd~~l~~e~W~r  234 (376)
                      ||++|+ ..++||.....|  ++|+|
T Consensus        81 VY~~le-~~~~elk~~~~~--~~w~~  103 (104)
T d1tuaa2          81 VYRHLE-RIMREIKRRERL--KMWAR  103 (104)
T ss_dssp             HHHHHH-HHHHHHHHHHHH--HHHHH
T ss_pred             HHHHHH-HHHHHHHHHHHH--Hhhcc
Confidence            999998 677999987776  77987
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6 {Streptomyces antibioticus [TaxId: 1890]} Back     information, alignment and structure
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2ja9a2 d.51.1.1 (A:152-236) Ribosomal RNA-processing protein 40, RRP40 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure