Citrus Sinensis ID: 017157

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370------
Protein Sequence
MATLAGNVGLKISPRLEFRGLLIPWISKNNAISCVKGRDYSSSFPVRYVPKKSVKIKESENSVPVKGLERNELRKQPDASGLRTEVSNSGRDVKKPLKIYEPKNSVPVNGLQRNELQKQSDASELRTEVSNSGRDVKTSFASHKKFQNHNRMTNNNILLDAAKQEFGEEISCEHGLFEESEVFEEPQEVAEEMKILQQKDFYLQAAKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQASKQWLRSQGAPKETRKSRIIHWLQYRGFNWCVTSFILKKLESQYPS
Secondary Structure (PSIPRED)
ccccccccEEcccccccccccccccccccccEEEcccccccccccEEEcccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccHHHHcccccccHHHcccccccccccccccHHHHHHHccccccccccccHHHHcccHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHcccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHEEEEEEcccccEEEEEEEEEEccEEEEEccccccccccEEEEcccccEEEEccccccccccccccccccccccEEEEEEcccccccccccccEccccccccccccHHHHccccccccEEEEEcccccccEEEEccccEEccccccccccEEEcccHcHccHHHEEcccccccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
matlagnvglkisprlefrgllipwisknnaiscvkgrdysssfpvryvpkksvkikesensvpvkglernelrkqpdasglrtevsnsgrdvkkplkiyepknsvpvnglqrnelqkqsdaselrtevsnsgrdvktsfashkkfqnhnrmtnnnILLDAAKQEFgeeiscehglfeesevfeepQEVAEEMKILQQKDFYLQAAKARQDAENLAVKLLATRAFTAVEMRKKlngkkfpsHVIEAVITDFqsrglindslYAESYsrsrwssaswgprRIKQALFkkgisqtdaKKAVNLvfrdgesdedqesklgmsKHSIDRLFVQASKQWlrsqgapketrKSRIIHWLQYRGFNWCVTSFILKKLESQYPS
Flexible Loop (DISEMBL)
matlagnvglkisprleFRGLLIpwisknnaiscvkgrdysssfpvryvpkksvkikesensvpvkglernelrkqpdasglrtevsnsgrdvkkplkiyepknsvpvnglqrnelqkqsdaselrtevsnsgrdvktsfashkkfqnhnrmtnnNILLDAAKQEFGEEISCEHGLFEESEVFEEPQEVAEEMKILQQKDFYLQAAKARQDAENLAVKLLATRAFTAVEMRKklngkkfpshVIEAVItdfqsrglINDSLYAESYSrsrwssaswgprRIKQAlfkkgisqtdakKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQASKQwlrsqgapketrkSRIIHWLQYRGFNWCVTSFILKKLESQYPS
Low Complexity Region (SEG)
MATLAGNVGLKISPRLEFRGLLIPWISKNNAISCVKGRDYSSSFPVRYVPKKSVKIKESENSVPVKGLERNELRKQPDASGLRTEVSNSGRDVKKPLKIYEPKNSVPVNGLQRNELQKQSDASELRTEVSNSGRDVKTSFASHKKFQNHNRMTNNNILLDAAKQEFGEEISCehglfeesevfeepqevaeeMKILQQKDFYLQAAKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLyaesysrsrwssaswGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQASKQWLRSQGAPKETRKSRIIHWLQYRGFNWCVTSFILKKLESQYPS
Disordered region (IsUnstruct)
******NVGLKISPRLEFRGLLIPWISKNNAISCVKGRDYSSSFPVRYV***********************************************************************************************************ILLDAAKQEFGEEISCEHGLF***************MKILQQKDFYLQAAKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQALFKKGIS******AVNLV***********************LFVQ****W************SRIIHWLQYRGFNWCVTSFILKK*******
Disordered Region (DISOPRED)
*******VGLKISPRLEFRGLLIPWISKNNAISCVKGR*********************************************************************************************************************NILLDAAKQEFGEEISCEHGLFEESEVFEE*********************KARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRW***SWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQASKQW*********TRKSRIIHWLQYRGFNWCVTSFILK*LE*****
Disordered Region (DISEMBL)
MATLAGNVGLKISPRLEFRGLLIPWISKNNAISCVKGRDYSSSFPVRYVPKKSVKIKESENSVPVKGLERNEL****************GRDVKKPLKIYEPKNSVPVNGLQR**********************VKTSFASHKKFQNHNRMTNNNILLDAAKQEFGEEISCEHGLFEESEVFEEPQEVAEEMKILQQKDFYLQAAKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAE************GPRRIKQALFKKGISQTDAKKAVNLVFRDG**********GMSKHSIDRLFVQASKQW***********KSRIIHWLQYRGFNWCVTSFILKKLESQYPS
Disordered Region (DISPRO)
*ATLAGNVGLKISPRLEFRGLLIPWISKNNAISCVKGRDYSSSFPVRYVPKKSVKIKESENSVPVKGLERNELRKQPDASGLRTEVSNSGRDVKKPLKIYEPKNSVPVNGLQRNELQKQSDASELRTEVSNSGRDVKTSFASHKKFQNHNRMTNNNILLDAAKQEFGEEISCEHGLFEESEVFEEPQEVAEEMKILQQKDFYLQAAKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQASKQWLRSQGAPKETRKSRIIHWLQYRGFNWCVTSFILKKLES****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATLAGNVGLKISPRLEFRGLLIPWISKNNAISCVKGRDYSSSFPVRYVPKKSVKIKESENSVPVKGLERNELRKQPDASGLRTEVSNSGRDVKKPLKIYEPKNSVPVNGLQRNELQKQSDASELRTEVSNSGRDVKTSFASHKKFQNHNRMTNNNILLDAAKQEFGEEISCEHGLFEESEVFEEPQEVAEEMKILQQKDFYLQAAKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQASKQWLRSQGAPKETRKSRIIHWLQYRGFNWCVTSFILKKLESQYPS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	376	2.2.26 [Sep-21-2011]
Q182L1	212	Regulatory protein RecX O	yes	no	0.417	0.740	0.272	9e-09
A2RNY5	269	Regulatory protein RecX O	yes	no	0.385	0.539	0.312	8e-08
Q02VU7	269	Regulatory protein RecX O	yes	no	0.380	0.531	0.316	2e-07
Q1I6B8	155	Regulatory protein RecX O	yes	no	0.356	0.864	0.296	5e-07
Q47RS5	185	Regulatory protein RecX O	yes	no	0.398	0.810	0.233	7e-07
Q9CDN7	270	Regulatory protein RecX O	yes	no	0.420	0.585	0.258	7e-07
Q03Q74	266	Regulatory protein RecX O	yes	no	0.385	0.545	0.287	1e-06
Q87XY8	155	Regulatory protein RecX O	yes	no	0.220	0.535	0.333	2e-06
A4XWQ3	150	Regulatory protein RecX O	yes	no	0.351	0.88	0.256	3e-06
B1JDA1	156	Regulatory protein RecX O	yes	no	0.220	0.532	0.333	5e-06

>sp|Q182L1|RECX_CLOD6 Regulatory protein RecX OS=Clostridium difficile (strain 630) GN=recX PE=3 SV=1

 Score = 61.6 bits (148), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 90/180 (50%), Gaps = 23/180 (12%)

Query: 191 EEMKILQQKDFYLQAAKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITD 250
           EE+K +   + Y++A       +N A+ +L+    +  ++++KL+ + F  ++IE VI  
Sbjct: 48  EELKPILDDEMYIKA-------KNKALNILSHADQSEKKLKEKLSSE-FDENIIERVIDF 99

Query: 251 FQSRGLINDSLYAESYSRSRWSSASWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDE 310
            +S  L+NDS+ A+    +  +    G  RIKQ L+ KGI+++   +AV       E D+
Sbjct: 100 LKSYNLVNDSVLAQKIVNTNVNLNKCGKNRIKQNLYNKGINRSTINEAV------SELDK 153

Query: 311 DQESKLGMSKHSIDRLFVQASKQWLRSQGAPKETRKSRIIHWLQYRGFNWCVTSFILKKL 370
           D E +  M           A K++ R +   K+    +I   L Y+GF++ +   +L KL
Sbjct: 154 DTEFENAM---------YLAKKRYERVKKEDKKKIYQKISQHLSYKGFDYDIIKRVLNKL 204

Modulates RecA activity.
Clostridium difficile (strain 630) (taxid: 272563)

>sp|A2RNY5|RECX_LACLM Regulatory protein RecX OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=recX PE=3 SV=1

 Score = 58.5 bits (140), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 78/163 (47%), Gaps = 18/163 (11%)

Query: 212 AENLAVKLLATRAFTAVEMRKKLNGKKF-PSHVIEAVITDFQSRGLINDSLYAESYSRSR 270
            ++LA+  ++ +  T  E+RK L       +  IE V++      LIND  YAE++   +
Sbjct: 61  GKSLALYYISFKMRTGAEVRKYLLEHDINDTDQIEQVLSVLTENNLINDKSYAENFIEGK 120

Query: 271 WSSASWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQA 330
            S  S GP +IKQ L  KGIS     + +N ++    S+E Q          ID  +  A
Sbjct: 121 ISMGSSGPYQIKQKLLTKGISNDVLSETLNEIY----SEEKQ----------IDVAYKLA 166

Query: 331 SKQWLRSQGAPKETR--KSRIIHWLQYRGFNWCVTSFILKKLE 371
           SK   R+ G     +  K +II  L  +GF++ V+S  L  LE
Sbjct: 167 SK-LSRTYGTRLTLKQLKDKIIQNLMNKGFSYSVSSIALDSLE 208

Modulates RecA activity.

Lactococcus lactis subsp. cremoris (strain MG1363) (taxid: 416870)

>sp|Q02VU7|RECX_LACLS Regulatory protein RecX OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=recX PE=3 SV=1

 Score = 57.4 bits (137), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 77/161 (47%), Gaps = 18/161 (11%)

Query: 214 NLAVKLLATRAFTAVEMRKKLNGKKF-PSHVIEAVITDFQSRGLINDSLYAESYSRSRWS 272
           +LA+  ++ +  T  E+RK L       +  IE V++      LIND  YAE++   + S
Sbjct: 63  SLALYYISFKMRTGAEVRKYLLEHDINDTDQIEQVLSVLTENNLINDKSYAENFIEGKIS 122

Query: 273 SASWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQASK 332
             S GP +IKQ L  KGIS     +A+  ++    S+E Q          ID  +  ASK
Sbjct: 123 MGSSGPYQIKQKLLTKGISNDVLSEALKEIY----SEEKQ----------IDVAYKLASK 168

Query: 333 QWLRSQGAPKETR--KSRIIHWLQYRGFNWCVTSFILKKLE 371
              R+ G     +  K +II  L  +GF++ V+S  L  LE
Sbjct: 169 -LSRTYGTRLTLKQLKDKIIQNLMNKGFSYSVSSIALDSLE 208

Modulates RecA activity.

Lactococcus lactis subsp. cremoris (strain SK11) (taxid: 272622)

>sp|Q1I6B8|RECX_PSEE4 Regulatory protein RecX OS=Pseudomonas entomophila (strain L48) GN=recX PE=3 SV=1

 Score = 55.8 bits (133), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 18/152 (11%)

Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
           A+ LLA R    VE+ +KL  +  P  +IE  +      GL++++ Y ES+ R R S+A 
Sbjct: 15  AMDLLARREHGRVELTRKLRQRGAPDELIEPALDRLAEEGLLSEARYLESFIRYR-SNAG 73

Query: 276 WGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQASKQWL 335
           +GP RI++ L ++G+ + D  +++       ES+ D  ++L   +    R F     Q  
Sbjct: 74  YGPARIREELGQRGLDRGDIDQSLR------ESEVDWAARL---EEVWQRKFAGQRPQDP 124

Query: 336 RSQGAPKETRKSRIIHWLQYRGFNWCVTSFIL 367
           RS+   ++TR      +L YRGF+  +   +L
Sbjct: 125 RSRA--QQTR------FLAYRGFSMEMIGRLL 148

Modulates RecA activity.

Pseudomonas entomophila (strain L48) (taxid: 384676)

>sp|Q47RS5|RECX_THEFY Regulatory protein RecX OS=Thermobifida fusca (strain YX) GN=recX PE=3 SV=1

 Score = 55.5 bits (132), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 81/171 (47%), Gaps = 21/171 (12%)

Query: 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRW 271
           A  + ++LL     T  ++   L  ++ P  VIEAV+  F   G+++D+++AE++  SR 
Sbjct: 26  ARAICLRLLTRAPRTRAQLTDALRRREIPDEVIEAVLDRFGEVGIVDDAVFAEAWVDSRH 85

Query: 272 SSASWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQAS 331
           +      R +   L ++G+ +   + AV     DG S   +E+          R  V+  
Sbjct: 86  AGRGLARRALAAELRQRGVDEDTVRAAV-----DGLSPAQEEATA--------RQLVR-- 130

Query: 332 KQWLRSQGAPKETRKSRIIHWLQYRGFNWCVTSFILKK------LESQYPS 376
           ++   ++G P E R  R++  L  RG++  +   ++++      +E  +PS
Sbjct: 131 RRLAATRGKPTEVRVRRLMGMLARRGYSAGLAYRLVREELEAEGVEVDFPS 181

Modulates RecA activity.

Thermobifida fusca (strain YX) (taxid: 269800)

>sp|Q9CDN7|RECX_LACLA Regulatory protein RecX OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=recX PE=3 SV=1

 Score = 55.5 bits (132), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 87/186 (46%), Gaps = 28/186 (15%)

Query: 201 FYLQAAKARQDAE--------------NLAVKLLATRAFTAVEMRKKLNGKKFP-SHVIE 245
           F+L   K   DA+              +LA+  ++ +  T+ E+RK L+  +   +  I+
Sbjct: 37  FFLNVDKELDDADLEEIQSYDQFAQGKSLALYYISFKMRTSSEVRKYLSEHEIDNTDQID 96

Query: 246 AVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQALFKKGISQTDAKKAVNLVFRD 305
            VI       LIND  YAE++   + S  S GP +IKQ L  KGI      +A++ ++  
Sbjct: 97  EVINILTKNNLINDKAYAENFIEGKISMGSAGPYQIKQKLITKGIDPLIIDQALSNIY-- 154

Query: 306 GESDEDQESKLGMSKHSIDRLFVQASKQWLRSQGAPKETRKSRIIHWLQYRGFNWCVTSF 365
                D+E ++ ++     +L  + ++ +   Q    +  K +II  L  +GF + ++S 
Sbjct: 155 -----DEEKQIDVAY----KLAEKTNRTY--GQRLTLKQLKDKIIQNLMNKGFTYSISSI 203

Query: 366 ILKKLE 371
            L+ LE
Sbjct: 204 ALESLE 209

Modulates RecA activity.

Lactococcus lactis subsp. lactis (strain IL1403) (taxid: 272623)

>sp|Q03Q74|RECX_LACBA Regulatory protein RecX OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=recX PE=3 SV=1

 Score = 54.7 bits (130), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 78/160 (48%), Gaps = 15/160 (9%)

Query: 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRW 271
           A N A+  L+ +  T  E+R KL   + P+  I A +   +S  L++D+ YA SY R+  
Sbjct: 61  AYNRALDYLSQQLRTEKEVRDKLADLEIPAETIAATLQRLRSLALVDDAHYAASYVRTMM 120

Query: 272 SSASWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQAS 331
            +   GPR I+Q L  KG+ +    +A+ L      + E+Q + +G +          A+
Sbjct: 121 HTGDKGPRVIRQNLRHKGVLEQPIDEALTLY-----TTEEQLT-VGTAV---------AA 165

Query: 332 KQWLRSQGAPKETRKSRIIHWLQYRGFNWCVTSFILKKLE 371
           K   R Q  P  T++ +I   L  RGF+  + + +L  L+
Sbjct: 166 KLAKRYQRQPFGTQQQKIRQGLLTRGFDNDLATKMLATLD 205

Modulates RecA activity.

Lactobacillus brevis (strain ATCC 367 / JCM 1170) (taxid: 387344)

>sp|Q87XY8|RECX_PSESM Regulatory protein RecX OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=recX PE=3 SV=2

 Score = 54.3 bits (129), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 50/84 (59%), Gaps = 1/84 (1%)

Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
           A+ LLA R    VE+ +KL  +  P  +IEA +      GL+++S Y ES+   R + + 
Sbjct: 15  AMDLLARREHGRVELTRKLRQRGAPPELIEAALDRLVEEGLLSESRYLESFVSYR-ARSG 73

Query: 276 WGPRRIKQALFKKGISQTDAKKAV 299
           +GP RI++ L ++G+ + D ++A+
Sbjct: 74  YGPARIREELNQRGLQRADVERAL 97

Modulates RecA activity.

Pseudomonas syringae pv. tomato (strain DC3000) (taxid: 223283)

>sp|A4XWQ3|RECX_PSEMY Regulatory protein RecX OS=Pseudomonas mendocina (strain ymp) GN=recX PE=3 SV=1

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 24/156 (15%)

Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
           A+ LLA R    VE+ +KL  +  P  +I+  +      GL++++ Y ES+   R + A 
Sbjct: 12  AMDLLARREHGRVELTRKLRKRGAPDELIDGALDRLAEEGLLSEARYLESFVAYR-ARAG 70

Query: 276 WGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQASKQWL 335
           +GP+RI++ L ++G+++ D  +A+    RD   D                 F Q  + W 
Sbjct: 71  YGPQRIREELGQRGLARGDIDQAL----RDSGID----------------WFEQLRETWQ 110

Query: 336 RSQGA--PKETR-KSRIIHWLQYRGFNWCVTSFILK 368
           R      P + R +++   +L YRG++  +   +L+
Sbjct: 111 RKYAGRLPNDARERAQQGRFLAYRGYSLDMIGRLLR 146

Modulates RecA activity.

Pseudomonas mendocina (strain ymp) (taxid: 399739)

>sp|B1JDA1|RECX_PSEPW Regulatory protein RecX OS=Pseudomonas putida (strain W619) GN=recX PE=3 SV=1

 Score = 52.8 bits (125), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 50/84 (59%), Gaps = 1/84 (1%)

Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
           A+ LLA R    VE+ +KL  +     +IE  +      GL++++ Y ES+ R R S+A 
Sbjct: 15  AMDLLARREHGRVELTRKLRQRGATDELIELALDRLAEEGLLSEARYLESFIRYR-SNAG 73

Query: 276 WGPRRIKQALFKKGISQTDAKKAV 299
           +GP RI++ L ++G+++ D  +A+
Sbjct: 74  YGPARIREELGQRGLNRGDVDQAL 97

Modulates RecA activity.

Pseudomonas putida (strain W619) (taxid: 390235)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	376
224061625	376	predicted protein [Populus trichocarpa]	0.954	0.954	0.478	3e-84
296089978	382	unnamed protein product [Vitis vinifera]	0.853	0.840	0.464	4e-80
359494337	301	PREDICTED: regulatory protein recX-like	0.787	0.983	0.471	7e-74
356552462	317	PREDICTED: uncharacterized protein LOC10	0.808	0.958	0.411	2e-67
297834150	378	predicted protein [Arabidopsis lyrata su	0.909	0.904	0.377	4e-61
255582796	364	hypothetical protein RCOM_0104450 [Ricin	0.829	0.857	0.438	6e-61
356501659	196	PREDICTED: regulatory protein recX-like	0.454	0.872	0.637	1e-58
18399925	382	regulatory protein RecX family protein [	0.946	0.931	0.383	4e-58
21592783	382	contains similarity to regulatory protei	0.946	0.931	0.383	5e-58
255639191	196	unknown [Glycine max]	0.454	0.872	0.631	1e-57

>gi|224061625|ref|XP_002300573.1| predicted protein [Populus trichocarpa] gi|222847831|gb|EEE85378.1| predicted protein [Populus trichocarpa]

 Score =  318 bits (815), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 188/393 (47%), Positives = 257/393 (65%), Gaps = 34/393 (8%)

Query: 1   MATLAGNVGLKISPRLEFRGLLIPWISKNNAISCVKGRDY-SSSFPVRYVPKKSVKIKES 59
           M+  AGN+  K+S  L+FR  +IPW+ +NNA+ C+KGR++ SSS PVRY PK+S K  E 
Sbjct: 1   MSIFAGNLASKVSSSLQFRVSVIPWVKRNNAVLCLKGREFNSSSVPVRYTPKRSSKSDEI 60

Query: 60  ENSVPVKGLERNELRKQPDASGLRTEVSNSGRD-VKKPLKIYEPKNSVPVNGLQRNELQK 118
           ENS+P+KG ++    K  D       +++  +  +    +++E  N +PV   ++    K
Sbjct: 61  ENSLPMKGDKKRVFGKNLDGVSGNFGLNDKAKGRMGSEKRVFE--NPLPVKSSEKRVFDK 118

Query: 119 QSDASELRTEVSNSGRDVKTSFASHKKFQNHNRMTNNNILLDAAKQ------------EF 166
             D              V+ +F  ++K +N NR+ N ++  D A+Q            + 
Sbjct: 119 NLDG-------------VRGNFRLNEKVKNQNRICNESLSFDDARQVKQNALEVTAFSQL 165

Query: 167 GEEISCEHGLFEESEVFEEPQEVAEEMKILQQKDFYLQAA---KARQDAENLAVKLLATR 223
           GE+I+ E       E+  EP+E  EE  + Q+KD   Q+    K  QDAE +AV LLA R
Sbjct: 166 GEKINHESEP-RSHELMGEPEEDVEESVMQQEKDISNQSMIVHKIMQDAEKVAVGLLARR 224

Query: 224 AFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQ 283
           A+TAVE+RKKL+GK+FP  ++EAVI DF+SRGL+ND LYAE+YSRSRWSS+SWGPRRIK+
Sbjct: 225 AYTAVELRKKLHGKRFPPDIVEAVIGDFESRGLVNDGLYAETYSRSRWSSSSWGPRRIKK 284

Query: 284 ALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQASKQWLRSQGAPKE 343
           AL  KG+S+ D  KA+ LVF DG+SDE QESK+GMSK S+D+L +QASKQWLR Q  PK+
Sbjct: 285 ALSNKGVSEADTDKALKLVFEDGDSDE-QESKVGMSKISMDQLLIQASKQWLRGQDVPKD 343

Query: 344 TRKSRIIHWLQYRGFNWCVTSFILKKLESQYPS 376
           TRKSR+I WLQYRGFNW V +F+LKKLESQ+ S
Sbjct: 344 TRKSRLIRWLQYRGFNWDVVNFVLKKLESQHIS 376

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089978|emb|CBI39797.3| unnamed protein product [Vitis vinifera]

 Score =  304 bits (779), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 176/379 (46%), Positives = 237/379 (62%), Gaps = 58/379 (15%)

Query: 1   MATLAGNVGLKISPRLEFRGLLIPWISKNNAISCVKGRDYSSSFPVRYVPKKSVKIKESE 60
           M+T  GN   K S + ++R   I W++KNNA+ C+K R Y S  PVRY+PKKS       
Sbjct: 57  MSTFLGNFSCKFSFQFQYRPFFIAWMTKNNALCCMKNRAYGS-VPVRYIPKKS------- 108

Query: 61  NSVPVKGLERNELRKQPDASGLRTEVSNSGRDVKKPLKIYEPKNSVPVNGLQRNELQKQS 120
                                                  Y+ ++S  +   +  E+Q   
Sbjct: 109 ---------------------------------------YKVEDSKSLKSSEDEEIQDC- 128

Query: 121 DASELRTEVSNSGRDVKTSFASHKKFQNHNRMTNNNILLDAAKQEFGEEISCEHGLFEES 180
               +R   S+ GR  +T+FA  +K +  ++   NN++ DA + E  + I C+  + +  
Sbjct: 129 ----VRIRASDGGRSYRTTFAWDEKNKIQDKRPMNNLIFDA-ESESEDAIDCDVRVVD-F 182

Query: 181 EVFEEPQEVAEEMKILQQKDF----YLQAAKARQDAENLAVKLLATRAFTAVEMRKKLNG 236
           E  +EP++V +E +I Q+KD+      Q +K++QDAE LA++LLATRA+TAVE++KKL+G
Sbjct: 183 EFMQEPEDVVKEFRIYQEKDYPELDVSQVSKSKQDAEKLAIELLATRAYTAVELKKKLHG 242

Query: 237 KKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQALFKKGISQTDAK 296
           K+    + EAVI DFQSRGLIND+LYAE++SRSRWSS+SWGPRRIKQALFKKG+S+ DA+
Sbjct: 243 KRVACDITEAVINDFQSRGLINDALYAETFSRSRWSSSSWGPRRIKQALFKKGVSEADAE 302

Query: 297 KAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQASKQWLRSQGAPKETRKSRIIHWLQYR 356
           KAV LVF+D  S  DQES+ G+S  ++D LFVQASKQWLR    P+ETRKSRII WLQYR
Sbjct: 303 KAVKLVFKDDGSGGDQESRHGLSNLAMDHLFVQASKQWLRGHDVPRETRKSRIIRWLQYR 362

Query: 357 GFNWCVTSFILKKLESQYP 375
           GF W V SFILKKLESQYP
Sbjct: 363 GFTWAVVSFILKKLESQYP 381

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494337|ref|XP_002267915.2| PREDICTED: regulatory protein recX-like [Vitis vinifera]

 Score =  283 bits (725), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 167/354 (47%), Positives = 224/354 (63%), Gaps = 58/354 (16%)

Query: 26  ISKNNAISCVKGRDYSSSFPVRYVPKKSVKIKESENSVPVKGLERNELRKQPDASGLRTE 85
           ++KNNA+ C+K R Y S  PVRY+PKKS                                
Sbjct: 1   MTKNNALCCMKNRAYGS-VPVRYIPKKS-------------------------------- 27

Query: 86  VSNSGRDVKKPLKIYEPKNSVPVNGLQRNELQKQSDASELRTEVSNSGRDVKTSFASHKK 145
                         Y+ ++S  +   +  E+Q       +R   S+ GR  +T+FA  +K
Sbjct: 28  --------------YKVEDSKSLKSSEDEEIQDC-----VRIRASDGGRSYRTTFAWDEK 68

Query: 146 FQNHNRMTNNNILLDAAKQEFGEEISCEHGLFEESEVFEEPQEVAEEMKILQQKDF---- 201
            +  ++   NN++ DA + E  + I C+  + +  E  +EP++V +E +I Q+KD+    
Sbjct: 69  NKIQDKRPMNNLIFDA-ESESEDAIDCDVRVVD-FEFMQEPEDVVKEFRIYQEKDYPELD 126

Query: 202 YLQAAKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSL 261
             Q +K++QDAE LA++LLATRA+TAVE++KKL+GK+    + EAVI DFQSRGLIND+L
Sbjct: 127 VSQVSKSKQDAEKLAIELLATRAYTAVELKKKLHGKRVACDITEAVINDFQSRGLINDAL 186

Query: 262 YAESYSRSRWSSASWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKH 321
           YAE++SRSRWSS+SWGPRRIKQALFKKG+S+ DA+KAV LVF+D  S  DQES+ G+S  
Sbjct: 187 YAETFSRSRWSSSSWGPRRIKQALFKKGVSEADAEKAVKLVFKDDGSGGDQESRHGLSNL 246

Query: 322 SIDRLFVQASKQWLRSQGAPKETRKSRIIHWLQYRGFNWCVTSFILKKLESQYP 375
           ++D LFVQASKQWLR    P+ETRKSRII WLQYRGF W V SFILKKLESQYP
Sbjct: 247 AMDHLFVQASKQWLRGHDVPRETRKSRIIRWLQYRGFTWAVVSFILKKLESQYP 300

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552462|ref|XP_003544586.1| PREDICTED: uncharacterized protein LOC100803154 [Glycine max]

 Score =  262 bits (669), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 156/379 (41%), Positives = 206/379 (54%), Gaps = 75/379 (19%)

Query: 1   MATLAGNVGLKISPRLEFRGLLIPWISKNNAISCVKGRDYSSSFPVRYVPKKSVKIKESE 60
           MA  A N+G  IS     R   I        I C+K R+YSSS P+RY+   S ++K  E
Sbjct: 3   MAGFAANIGFNISSHFPCRVFSIHRSIWKFQIVCLKRREYSSSVPIRYISSTSCRVKILE 62

Query: 61  NSVPVKGLERNELRKQPDASGLRTEVSNSGRDVKKPLKIYEPKNSVPVNGLQRNELQKQS 120
            ++PVK L        PD + L+                                     
Sbjct: 63  TALPVKSLGYCSC---PDVNVLKI------------------------------------ 83

Query: 121 DASELRTEVSNSGRDVKTSFASHKKFQNHNRMTNNNILLDAAKQEFGEEISCEHGLFEES 180
                     N G+DV+ + A  +  Q+ N +                   C   LF++S
Sbjct: 84  ----------NGGKDVQATIAHCEISQDPNEI-------------------CPDLLFDDS 114

Query: 181 E--VFEEPQEVAEEMKILQQKDF----YLQAAKARQDAENLAVKLLATRAFTAVEMRKKL 234
           E   F++ +EV E + I +  D      +Q  K   D E  A+KLLA+RA TA+E+RKKL
Sbjct: 115 EQDSFDQMEEVGE-LTIHEGGDSCDQELIQIDKFTSDVEEAAIKLLASRALTALELRKKL 173

Query: 235 NGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQALFKKGISQTD 294
            GK+F    +EAVI  FQ RG IND LYAE++S+SRW+S+SWGPRRIKQALFKKG+SQ D
Sbjct: 174 LGKRFSPDSVEAVINKFQRRGFINDRLYAETFSQSRWTSSSWGPRRIKQALFKKGVSQAD 233

Query: 295 AKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQASKQWLRSQGAPKETRKSRIIHWLQ 354
           A+KAV +VF+D +  ED +S +G+SKHS+D L+ QASKQW RSQ   KETRKSRI+ WLQ
Sbjct: 234 AEKAVEVVFKDNDCAEDHKSVIGLSKHSMDHLYTQASKQWFRSQNVLKETRKSRIVRWLQ 293

Query: 355 YRGFNWCVTSFILKKLESQ 373
           YRGF+W V + ILKKL+ Q
Sbjct: 294 YRGFDWHVINIILKKLDRQ 312

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834150|ref|XP_002884957.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297330797|gb|EFH61216.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  241 bits (615), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 151/400 (37%), Positives = 228/400 (57%), Gaps = 58/400 (14%)

Query: 9   GLKISPRLEFRGLLIPWISKNNA--ISCVKGRDYSSSFPVRYVPKKSVKIKESENSVPVK 66
           G ++S  ++ R  +IPW+ +++A  I C   RDY+SS  ++YVP KS KI +   S P  
Sbjct: 5   GFRLSIAIQHRVFVIPWVKRHSAPRILCSDQRDYTSSGLIKYVPNKSRKITQDLTSQP-- 62

Query: 67  GLERNELRKQPDASGLRTEVSNSGRDVKKPLKIYEPKNSVPVNGLQRNELQKQSDASELR 126
            L+   L    D S L ++V  + ++ +    +               +LQ+++D     
Sbjct: 63  -LDVTRL----DHSVLGSQVKGNSKEARDGTFL---------------DLQEKNDTG--- 99

Query: 127 TEVSNSGRDVKTSFASHKKFQNHNRMTNNNILLDAAKQEFGE------EISCEHGLFEES 180
           + ++ S  D      S  K  N +R  ++++L    K+E GE       +  +  ++ ++
Sbjct: 100 SYMNVSCDDSDEGILSLDKGINASRW-DHSVLGSKVKEETGEGTVLHLRVKNDAEMYSDA 158

Query: 181 EVFEEPQEVAEEMK------ILQQKDFY---------------LQAAKARQDAENLAVKL 219
              +  +E + E++        Q K  Y                +A K  Q+AE++A++ 
Sbjct: 159 SCDDSNEESSNEVRSTGYKSTRQHKQAYDKVKLHMEAEQAKSSKEACKTTQEAEHMAMRY 218

Query: 220 LATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPR 279
           L  RA++A +++KKL GKKFP  V++ VI DFQ RG INDSLYAES++RSRWSS SWGPR
Sbjct: 219 LGLRAYSAADLKKKLMGKKFPLEVVDRVINDFQIRGFINDSLYAESFTRSRWSSLSWGPR 278

Query: 280 RIKQALFKKGISQTDAKKAVNLVFRD---GESDEDQESKLGMSKHSIDRLFVQASKQWLR 336
           RIKQALFKKGIS  D++ A+ LVF      E DE+ E   G+SK ++D+L+VQASK+WL+
Sbjct: 279 RIKQALFKKGISNKDSETAIKLVFEKRQCKEGDEEAELNHGLSKEAVDQLYVQASKRWLQ 338

Query: 337 SQGAPKETRKSRIIHWLQYRGFNWCVTSFILKKLESQYPS 376
            +  P ETRK+R+I WLQYRGFNW V S +LK+LES + S
Sbjct: 339 GRDLPIETRKARVIRWLQYRGFNWGVVSQLLKRLESTHES 378

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582796|ref|XP_002532172.1| hypothetical protein RCOM_0104450 [Ricinus communis] gi|223528140|gb|EEF30209.1| hypothetical protein RCOM_0104450 [Ricinus communis]

 Score =  241 bits (614), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 165/376 (43%), Positives = 218/376 (57%), Gaps = 64/376 (17%)

Query: 1   MATLAGNVGLKISPRLEFRGLLIPWISKNNAISCVKGRDYSS-SFPVRYVPKKSVKI--- 56
           MA LA      +  RL    + IPW+ +N  + C+K RD+S+ S PVRY+PKKS K+   
Sbjct: 1   MAILASKFSFHLQSRL--FSISIPWVKRNAPVLCLKSRDHSTLSVPVRYIPKKSSKLNEF 58

Query: 57  KESENSVPVKGLERNELRKQPDASGLRTEVSNSGRDVKKPLKIYEPKNSVPVNGLQRNEL 116
           K+S+N V    L+++  +K P          N  +D+ K                  N+ 
Sbjct: 59  KDSDNGV----LDKSLNQKAP----------NRNQDLYK-------------QDFLSNDA 91

Query: 117 QKQSDASELRTEVSNSGRDVKTSFASHKKFQNHNRMTNNNILLDAAKQEFGEEISCEHGL 176
           Q+  D    R E+ N  +          KF+ H              ++       E G+
Sbjct: 92  QQGGDMPGTR-EILNFTK-------LWGKFEKHGN-----------AEKVAAFSGLEEGI 132

Query: 177 FEESEV-----FEEPQEVAEEMKILQQKDFYL----QAAKARQDAENLAVKLLATRAFTA 227
             + EV      EEP++ +E  K++Q +        Q+ +   DAE +A++ LATRAFTA
Sbjct: 133 NNDVEVIQHKFMEEPEDSSE--KLIQHERLICKKNAQSGRTMLDAEKMAIEFLATRAFTA 190

Query: 228 VEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQALFK 287
           VE+RKKL+GKKFP  ++EAVI DFQ+RGLINDSLYAE++SRSRWSS+SWGPRRIKQALF 
Sbjct: 191 VELRKKLHGKKFPPDIVEAVIIDFQARGLINDSLYAETFSRSRWSSSSWGPRRIKQALFM 250

Query: 288 KGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQASKQWLRSQGAPKETRKS 347
           KG+S+ DA+KA+ LVF D  S   QE KLGMSK S++ L VQASKQW R Q  P+ETRKS
Sbjct: 251 KGVSEADAEKAIKLVFEDDRSG-GQELKLGMSKLSMEHLLVQASKQWFRGQDVPRETRKS 309

Query: 348 RIIHWLQYRGFNWCVT 363
           RII WLQYRGFNW V 
Sbjct: 310 RIIRWLQYRGFNWDVA 325

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501659|ref|XP_003519641.1| PREDICTED: regulatory protein recX-like [Glycine max]

 Score =  233 bits (594), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 109/171 (63%), Positives = 135/171 (78%)

Query: 203 LQAAKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLY 262
           +Q  K   D E  A+KLLA+RA TA+E+RKKL GK+F    +EAVI  FQ RG IND LY
Sbjct: 21  IQINKFTSDVEEAAIKLLASRALTALELRKKLLGKRFSPDEVEAVINKFQKRGFINDRLY 80

Query: 263 AESYSRSRWSSASWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHS 322
           AE++S+SRW+S+SWGPRRIKQALFKKG+SQ DA+KAV +VF+D +  ED +S +G+SKHS
Sbjct: 81  AETFSQSRWTSSSWGPRRIKQALFKKGVSQADAEKAVEVVFKDNDCAEDLKSVIGLSKHS 140

Query: 323 IDRLFVQASKQWLRSQGAPKETRKSRIIHWLQYRGFNWCVTSFILKKLESQ 373
           +D L+ QASKQW R Q  PKETRKSRI+ WLQYRGF+W V +FILKKL+ Q
Sbjct: 141 MDHLYTQASKQWFRGQNVPKETRKSRIVRWLQYRGFDWNVINFILKKLDRQ 191

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18399925|ref|NP_566448.1| regulatory protein RecX family protein [Arabidopsis thaliana] gi|110743293|dbj|BAE99536.1| hypothetical protein [Arabidopsis thaliana] gi|332641798|gb|AEE75319.1| regulatory protein RecX family protein [Arabidopsis thaliana]

 Score =  231 bits (589), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 154/402 (38%), Positives = 222/402 (55%), Gaps = 46/402 (11%)

Query: 1   MATLAGNVGLKISPRLEFRGLLIPWISKNNA--ISCVKGRDYSSSFPVRYVPKKSVKIKE 58
           M  L   + + I     FR   IPW  +++   I C + RDY SS   +YVPKKS KI E
Sbjct: 1   MLKLGFRLAIGIQHHRLFR---IPWAKRHSVPRILCSEQRDYCSSGLTKYVPKKSRKITE 57

Query: 59  SENS--------------VPVKGLERN-------ELRKQPDASGLRTEVSNSGRDVKKPL 97
              S                VKG  +        +L+++ D +G  T VS    D     
Sbjct: 58  DLTSQQFDVTRVDHSVLGFQVKGNSKEARDGSFLDLQEEND-TGSYTNVSCDDSD----- 111

Query: 98  KIYEPKNSVPVNGLQRNELQKQSDASELRTEVSNSGRDVKTSFASHKKFQNHNRMTNNNI 157
              E   S+   G+  + L      S+++  +  +G D  T F  H + +N   M ++ +
Sbjct: 112 ---EGFMSLD-KGIDASRLDHSVLGSKVKANIKETGED--TDF--HLRDKNDADMYSD-V 162

Query: 158 LLDAAKQEFGEEISCEHGLFEESEVFEEPQEVAEEMKILQQKDFYLQAAKARQDAENLAV 217
             D +  E   E+    G     +  +   ++   ++  Q K    +A K  QDAE++A+
Sbjct: 163 SCDDSNDESSNEVRST-GYKSTRQHKQAYDKIKLHLEAEQAKSSK-EACKTTQDAEHMAI 220

Query: 218 KLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWG 277
           + L  RA++A +++KKL GKK+P  V++ VI DFQ RG +NDSLYAES++RSRWSS SWG
Sbjct: 221 RYLGLRAYSAADLKKKLIGKKYPIEVVDKVIDDFQIRGFVNDSLYAESFTRSRWSSLSWG 280

Query: 278 PRRIKQALFKKGISQTDAKKAVNLVFRD---GESDEDQESKLGMSKHSIDRLFVQASKQW 334
           PRRIKQALFKKGIS  D++ A+ LVF      E DE+ E   G+SK ++D+L+VQASK+W
Sbjct: 281 PRRIKQALFKKGISNKDSETAIKLVFEKRQCNEGDEEAELNHGLSKEAVDQLYVQASKRW 340

Query: 335 LRSQGAPKETRKSRIIHWLQYRGFNWCVTSFILKKLESQYPS 376
           L+ +  P ETRK+R+I WLQYRGFNW V + +LK+LES + S
Sbjct: 341 LQGRDLPTETRKTRVIRWLQYRGFNWGVVTQLLKRLESTHES 382

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592783|gb|AAM64732.1| contains similarity to regulatory protein RecX [Arabidopsis thaliana]

 Score =  231 bits (588), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 154/402 (38%), Positives = 222/402 (55%), Gaps = 46/402 (11%)

Query: 1   MATLAGNVGLKISPRLEFRGLLIPWISKNNA--ISCVKGRDYSSSFPVRYVPKKSVKIKE 58
           M  L   + + I     FR   IPW  +++   I C + RDY SS   +YVPKKS KI E
Sbjct: 1   MLKLGFRLAIGIQHHRLFR---IPWAKRHSVPRILCSEQRDYCSSGLTKYVPKKSRKITE 57

Query: 59  SENS--------------VPVKGLERN-------ELRKQPDASGLRTEVSNSGRDVKKPL 97
              S                VKG  +        +L+++ D +G  T VS    D     
Sbjct: 58  DLTSQQFDVTRVDHSVLGFQVKGNSKEARDGSFLDLQEEND-TGSYTNVSCDDSD----- 111

Query: 98  KIYEPKNSVPVNGLQRNELQKQSDASELRTEVSNSGRDVKTSFASHKKFQNHNRMTNNNI 157
              E   S+   G+  + L      S+++  +  +G D  T F  H + +N   M ++ +
Sbjct: 112 ---EGFMSLD-KGIDASRLDHSVLGSKVKANIKETGED--TDF--HLRDKNDADMYSD-V 162

Query: 158 LLDAAKQEFGEEISCEHGLFEESEVFEEPQEVAEEMKILQQKDFYLQAAKARQDAENLAV 217
             D +  E   E+    G     +  +   ++   ++  Q K    +A K  QDAE++A+
Sbjct: 163 SCDDSNDESSNEVRST-GYKSTRQHKQAYDKIKLHLEAEQAKSSK-EACKTTQDAEHMAI 220

Query: 218 KLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWG 277
           + L  RA++A +++KKL GKK+P  V++ VI DFQ RG +NDSLYAES++RSRWSS SWG
Sbjct: 221 RYLGLRAYSAADLKKKLIGKKYPIEVVDKVIDDFQIRGFVNDSLYAESFTRSRWSSLSWG 280

Query: 278 PRRIKQALFKKGISQTDAKKAVNLVFRD---GESDEDQESKLGMSKHSIDRLFVQASKQW 334
           PRRIKQALFKKGIS  D++ A+ LVF      E DE+ E   G+SK ++D+L+VQASK+W
Sbjct: 281 PRRIKQALFKKGISNKDSETAIKLVFEKRQCNEGDEEAELNHGLSKEAVDQLYVQASKRW 340

Query: 335 LRSQGAPKETRKSRIIHWLQYRGFNWCVTSFILKKLESQYPS 376
           L+ +  P ETRK+R+I WLQYRGFNW V + +LK+LES + S
Sbjct: 341 LQGRDLPTETRKTRVIRWLQYRGFNWGVITQLLKRLESTHES 382

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255639191|gb|ACU19894.1| unknown [Glycine max]

 Score =  229 bits (585), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 108/171 (63%), Positives = 134/171 (78%)

Query: 203 LQAAKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLY 262
           +Q  K   D E  A+KLLA+RA TA+E+RKKL GK+F    +EAVI  FQ RG IND LY
Sbjct: 21  IQIDKFTSDVEEAAIKLLASRALTALELRKKLLGKRFSPDSVEAVINKFQRRGFINDRLY 80

Query: 263 AESYSRSRWSSASWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHS 322
           AE++S+SRW+S+SWGPRRIKQALFKKG+SQ DA+KAV +VF+D +  ED +S +G+SKHS
Sbjct: 81  AETFSQSRWTSSSWGPRRIKQALFKKGVSQADAEKAVEVVFKDNDCAEDHKSVIGLSKHS 140

Query: 323 IDRLFVQASKQWLRSQGAPKETRKSRIIHWLQYRGFNWCVTSFILKKLESQ 373
           +D L+ QASKQW RSQ   KETRKSRI+ WLQYRGF+W V + ILKKL+ Q
Sbjct: 141 MDHLYTQASKQWFRSQNVLKETRKSRIVRWLQYRGFDWHVINIILKKLDRQ 191

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	376
TAIR|locus:505006340	382	AT3G13226 "AT3G13226" [Arabido	0.962	0.947	0.341	9.5e-50

TAIR|locus:505006340 AT3G13226 "AT3G13226" [Arabidopsis thaliana (taxid:3702)]

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 132/386 (34%), Positives = 204/386 (52%)

Query:     8 VGLKISPRLEFRGLL-IPWISKNNA--ISCVKGRDYSSSFPVRYVPKKSVKIKESENSVP 64
             +G +++  ++   L  IPW  +++   I C + RDY SS   +YVPKKS KI E   S  
Sbjct:     4 LGFRLAIGIQHHRLFRIPWAKRHSVPRILCSEQRDYCSSGLTKYVPKKSRKITEDLTSQQ 63

Query:    65 ---------VKGLE-RNELRKQPDASGLRTEVSNSGRDVKKPLKIYEPKNSVPVN-GLQR 113
                      V G + +   ++  D S L  +  N              +  + ++ G+  
Sbjct:    64 FDVTRVDHSVLGFQVKGNSKEARDGSFLDLQEENDTGSYTNVSCDDSDEGFMSLDKGIDA 123

Query:   114 NELQKQSDASELRTEVSNSGRDVKTSFASHKKFQNHNRMTNNNILLDAAKQEFGEEISCX 173
             + L      S+++  +  +G D  T F  H + +N   M ++ +  D +  E   E+   
Sbjct:   124 SRLDHSVLGSKVKANIKETGED--TDF--HLRDKNDADMYSD-VSCDDSNDESSNEVR-S 177

Query:   174 XXXXXXXXXXXXXXXXXXXMKILQQKDFYLQAAKARQDAENLAVKLLATRAFTAVEMRKK 233
                                ++  Q K    +A K  QDAE++A++ L  RA++A +++KK
Sbjct:   178 TGYKSTRQHKQAYDKIKLHLEAEQAKSSK-EACKTTQDAEHMAIRYLGLRAYSAADLKKK 236

Query:   234 LNGKKFPSHVIEAVITDFQSRGLINDSLXXXXXXXXXXXXXXXGPRRIKQALFKKGISQT 293
             L GKK+P  V++ VI DFQ RG +NDSL               GPRRIKQALFKKGIS  
Sbjct:   237 LIGKKYPIEVVDKVIDDFQIRGFVNDSLYAESFTRSRWSSLSWGPRRIKQALFKKGISNK 296

Query:   294 DAKKAVNLVFRDGESDE-DQESKL--GMSKHSIDRLFVQASKQWLRSQGAPKETRKSRII 350
             D++ A+ LVF   + +E D+E++L  G+SK ++D+L+VQASK+WL+ +  P ETRK+R+I
Sbjct:   297 DSETAIKLVFEKRQCNEGDEEAELNHGLSKEAVDQLYVQASKRWLQGRDLPTETRKTRVI 356

Query:   351 HWLQYRGFNWCVTSFILKKLESQYPS 376
              WLQYRGFNW V + +LK+LES + S
Sbjct:   357 RWLQYRGFNWGVVTQLLKRLESTHES 382


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.130   0.365    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      376       341   0.00095  116 3  11 23  0.43    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  204 KB (2114 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  28.53u 0.16s 28.69t   Elapsed:  00:00:01
  Total cpu time:  28.53u 0.16s 28.69t   Elapsed:  00:00:01
  Start:  Fri May 10 18:10:56 2013   End:  Fri May 10 18:10:57 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0006282 "regulation of DNA repair" evidence=IEA;ISS

GO:0007126 "meiosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	376
PRK00117	157	PRK00117, recX, recombination regulator RecX; Revi	2e-22
pfam02631	115	pfam02631, RecX, RecX family	1e-21
COG2137	174	COG2137, OraA, Uncharacterized protein conserved i	2e-19
PRK14135	263	PRK14135, recX, recombination regulator RecX; Prov	1e-11
PRK14134	283	PRK14134, recX, recombination regulator RecX; Prov	4e-04
PRK14137	195	PRK14137, recX, recombination regulator RecX; Prov	0.004

>gnl|CDD|234646 PRK00117, recX, recombination regulator RecX; Reviewed

 Score = 91.9 bits (229), Expect = 2e-22
 Identities = 48/149 (32%), Positives = 76/149 (51%), Gaps = 18/149 (12%)

Query: 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRW 271
           A   A++LLA R  +  E+R+KL  K F   VIEAV+   +  GL++D  +AES+ RSR 
Sbjct: 13  ARARALRLLARREHSRAELRRKLAAKGFSEEVIEAVLDRLKEEGLLDDERFAESFVRSR- 71

Query: 272 SSASWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQAS 331
           +   +GPRRI+Q L +KG+ +   ++A+       E D D E          +     A 
Sbjct: 72  ARKGYGPRRIRQELRQKGVDREIIEEALA------ELDIDWE----------ELARELAR 115

Query: 332 KQWLRSQGAPKETRKSRIIHWLQYRGFNW 360
           K+  R         K++++ +L  RGF+ 
Sbjct: 116 KK-FRRPLPDDAKEKAKLVRFLARRGFSM 143

Length = 157

>gnl|CDD|202322 pfam02631, RecX, RecX family

 Score = 88.4 bits (220), Expect = 1e-21
 Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 19/132 (14%)

Query: 237 KKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQALFKKGISQTDAK 296
           K F   VIEAV+   +  G ++D  +AES+ RSR  +   GPRRI+Q L +KG+     +
Sbjct: 3   KGFSEEVIEAVLERLKELGYLDDERFAESFVRSRLRTKGKGPRRIRQELRQKGVDDELIE 62

Query: 297 KAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQASKQWLRSQGAPKETRKSRIIHWLQYR 356
           +A+  +      +E+Q  +L   K                         K +++ +L  R
Sbjct: 63  EALEEI-----DEEEQARELAEKK--------------FGRLRPEDRKEKQKLVRFLLRR 103

Query: 357 GFNWCVTSFILK 368
           GF++ V    LK
Sbjct: 104 GFSYDVIRRALK 115

RecX is a putative bacterial regulatory protein. The gene encoding RecX is found downstream of recA, and is thought to interact with the RecA protein. Length = 115

>gnl|CDD|225048 COG2137, OraA, Uncharacterized protein conserved in bacteria [General function prediction only]

 Score = 84.7 bits (210), Expect = 2e-19
 Identities = 52/178 (29%), Positives = 85/178 (47%), Gaps = 20/178 (11%)

Query: 196 LQQKDFYLQAAKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRG 255
           L++     Q AK      N A++LL+ R  +  E+R+KL  K+F   +IE VI      G
Sbjct: 10  LEEISRSDQYAKGL----NRALRLLSRRDRSEKELRRKLAKKEFSEEIIEEVIDRLAEEG 65

Query: 256 LINDSLYAESYSRSRWSSASWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESK 315
            ++D+ +AE+Y RSR S    GP R+KQ L +KGI     ++A            D+E +
Sbjct: 66  YLDDTRFAEAYIRSR-SRKGKGPARLKQELKQKGIDDEIIEEA--------LELIDEEDE 116

Query: 316 LGMSKHSIDRLFVQASKQWLRSQGAPKETRKSRIIHWLQYRGFNWCVTSFILKKLESQ 373
              ++           K++ R    P +  K++I  +L  RGF++ V    L + E +
Sbjct: 117 QERARK-------VLRKKFKRENKPPDKKEKAKIQRFLLRRGFSYEVIKEALNEAEEE 167

Length = 174

>gnl|CDD|237619 PRK14135, recX, recombination regulator RecX; Provisional

 Score = 63.7 bits (156), Expect = 1e-11
 Identities = 52/184 (28%), Positives = 87/184 (47%), Gaps = 22/184 (11%)

Query: 190 AEEMKILQQKDFYLQAAKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVIT 249
            E+++ +Q  D   Q +K +    NLA+  L+ +  T  E+R  L   +    +I  VI 
Sbjct: 44  EEDLEEIQYAD---QVSKGK----NLALYYLSYQMRTEKEVRDYLKKHEISEEIISEVID 96

Query: 250 DFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESD 309
             +    I+D  YAESY R+  ++   GPR IKQ L +KGI     ++A++       ++
Sbjct: 97  KLKEEKYIDDKEYAESYVRTNINTGDKGPRVIKQKLLQKGIEDEIIEEALSEY-----TE 151

Query: 310 EDQESKLGMSKHSIDRLFVQASKQWLRSQGAPKETRKSRIIHWLQYRGFNWCVTSFILKK 369
           EDQ          I+     A K   + Q  P +  K +II  L  +GF++ V    L++
Sbjct: 152 EDQ----------IEVAQKLAEKLLKKYQKLPFKALKQKIIQSLLTKGFSYEVIKAALEE 201

Query: 370 LESQ 373
           L+ +
Sbjct: 202 LDLE 205

Length = 263

>gnl|CDD|184530 PRK14134, recX, recombination regulator RecX; Provisional

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 36/165 (21%), Positives = 72/165 (43%), Gaps = 19/165 (11%)

Query: 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRW 271
            +  A+K +     T  ++++KL  K++    +  VI   +    I+D  Y + Y R + 
Sbjct: 63  CKGYALKYIEKSYKTEKQIKEKLYLKEYDEDAVNRVIRFLKEYNFIDDDKYCDMYIREKI 122

Query: 272 SSASWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQAS 331
           +  S+G  +IK  L  KGI +    + +N +      DE++E K+          +  A 
Sbjct: 123 N--SYGRNKIKYTLLNKGIKENIIIEKINNI------DEEKEKKVA---------YKLAE 165

Query: 332 KQWLRSQGAPKETRK--SRIIHWLQYRGFNWCVTSFILKKLESQY 374
           K++     + K   K   ++  +L  RG++  +  +IL +L    
Sbjct: 166 KKYKILILSEKNKFKIYKKLGPYLISRGYSSNIAEWILNELIKNE 210

Length = 283

>gnl|CDD|172626 PRK14137, recX, recombination regulator RecX; Provisional

 Score = 37.7 bits (87), Expect = 0.004
 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 207 KARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESY 266
           +AR+     A + LA RA TA E+R KL  +     ++  V+   Q  G  +D+  A + 
Sbjct: 37  EAREALLAYAFRALAARAMTAAELRAKLERRSEDEALVTEVLERVQELGYQDDAQVARAE 96

Query: 267 SRSRWSSASWGPRRIKQALFKKGISQT 293
           +  R      G  R++Q L ++G+ +T
Sbjct: 97  NSRR----GVGALRVRQTLRRRGVEET 119

Length = 195

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	376
PRK14134	283	recX recombination regulator RecX; Provisional	99.97
PRK00117	157	recX recombination regulator RecX; Reviewed	99.97
COG2137	174	OraA Uncharacterized protein conserved in bacteria	99.97
PRK14135	263	recX recombination regulator RecX; Provisional	99.96
PRK14136	309	recX recombination regulator RecX; Provisional	99.96
PRK14137	195	recX recombination regulator RecX; Provisional	99.96
PF02631	121	RecX: RecX family; InterPro: IPR003783 RecX is a p	99.93
PRK14135	263	recX recombination regulator RecX; Provisional	99.84
PRK14134	283	recX recombination regulator RecX; Provisional	99.59
PRK00117	157	recX recombination regulator RecX; Reviewed	98.56
COG2137	174	OraA Uncharacterized protein conserved in bacteria	98.21
PF02631	121	RecX: RecX family; InterPro: IPR003783 RecX is a p	98.19
PRK14137	195	recX recombination regulator RecX; Provisional	97.85
PRK14136	309	recX recombination regulator RecX; Provisional	97.61
TIGR02698	130	CopY_TcrY copper transport repressor, CopY/TcrY fa	82.78
PF07553	48	Lipoprotein_Ltp: Host cell surface-exposed lipopro	80.94

>PRK14134 recX recombination regulator RecX; Provisional

Probab=99.97  E-value=4e-31  Score=256.69  Aligned_cols=187  Identities=20%  Similarity=0.261  Sum_probs=154.0

Q ss_pred             ccccchhhhhhcc-cccccccccccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHH
Q 017157          156 NILLDAAKQEFGE-EISCEHGLFEESEVFEEPQEVAEEMKILQQKDFYLQAAKARQDAENLAVKLLATRAFTAVEMRKKL  234 (376)
Q Consensus       156 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~A~~~AL~lLsrRdrS~~ELr~KL  234 (376)
                      ||.+|+-..-..+ ++...|++..   ++|.+++.+.+          +.......+|+++||++|++|+||+.||++||
T Consensus        19 ~i~ld~~~af~v~~~~l~~~~L~k---G~eld~e~~~e----------i~~~~~~~~a~~~AL~~Ls~r~rSe~Elr~KL   85 (283)
T PRK14134         19 NVYIDEEFAFACSAELVYYHNLKK---GKVIDVNSLND----------IIKEDNYIKCKGYALKYIEKSYKTEKQIKEKL   85 (283)
T ss_pred             EEEecCCeEEEecHHHHHHhCCcC---CCCcCHHHHHH----------HHHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence            4667764443334 5666688874   48998887764          55555688999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHhhhhcCCccHHHHHHHHHhCCCCHHHHHHHHHhhhcCCCChhHHHh
Q 017157          235 NGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQES  314 (376)
Q Consensus       235 ~~KG~sediIe~VLe~L~e~GyLDD~ryAesyvrsr~~~kg~GprkIrqeLrqKGId~eiIeeALee~~eeeeedEE~e~  314 (376)
                      .++|+++++|+.||++|+++|||||.+||++|++++.+  ++||++|+++|++|||+.++|++||+++.++   +| .  
T Consensus        86 ~~k~~~~~~Ie~vI~~L~e~~yldD~ryA~~yv~~~~~--~~G~~~I~~eL~qKGI~~~iIe~al~~~~~e---~e-~--  157 (283)
T PRK14134         86 YLKEYDEDAVNRVIRFLKEYNFIDDDKYCDMYIREKIN--SYGRNKIKYTLLNKGIKENIIIEKINNIDEE---KE-K--  157 (283)
T ss_pred             HhCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH--hhhHHHHHHHHHHCCCCHHHHHHHHHhCChh---hH-H--
Confidence            99999999999999999999999999999999999875  6999999999999999999999999986321   11 2  


Q ss_pred             hhccchhHHHHHHHHHHHHHhhccCC--ChHHHHHHHHHHHHhCCCCHHHHHHHHHhhhh
Q 017157          315 KLGMSKHSIDRLFVQASKQWLRSQGA--PKETRKSRIIHWLQYRGFNWCVTSFILKKLES  372 (376)
Q Consensus       315 a~~Lak~~le~Ll~~AeKk~~R~~~~--~~~k~rqKlir~L~RKGFs~d~I~~vL~eie~  372 (376)
                               +.+...++|++.+....  +..+.++|++++|++|||++++|..+|+++..
T Consensus       158 ---------e~a~~l~~Kk~~~~~~~~~~~~k~k~Kl~~~L~rrGFs~~~I~~vl~~~~~  208 (283)
T PRK14134        158 ---------KVAYKLAEKKYKILILSEKNKFKIYKKLGPYLISRGYSSNIAEWILNELIK  208 (283)
T ss_pred             ---------HHHHHHHHHhhcccccccccHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHh
Confidence                     23456667777654322  34578999999999999999999999999844

>PRK00117 recX recombination regulator RecX; Reviewed

Probab=99.97  E-value=9.6e-31  Score=231.90  Aligned_cols=149  Identities=32%  Similarity=0.481  Sum_probs=132.5

Q ss_pred             HHHHHHHHHHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHhhhhcCCccHHHHHHHHH
Q 017157          207 KARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQALF  286 (376)
Q Consensus       207 ~~~~~A~~~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD~ryAesyvrsr~~~kg~GprkIrqeLr  286 (376)
                      .+...|+++|+++|++|+||++||++||.++|+++++|+.||++|++.|||||.+||+.|++++.. +++|+++|+++|+
T Consensus         8 ~~~~~a~~~al~~L~~r~~s~~el~~kL~~kg~~~~~i~~vl~~l~~~~~ldD~~~a~~~~~~~~~-~~~g~~~I~~~L~   86 (157)
T PRK00117          8 RMYASARARALRLLARREHSRAELRRKLAAKGFSEEVIEAVLDRLKEEGLLDDERFAESFVRSRAR-KGYGPRRIRQELR   86 (157)
T ss_pred             cHHHHHHHHHHHHHccchhHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-CCchHHHHHHHHH
Confidence            357899999999999999999999999999999999999999999999999999999999999944 8999999999999


Q ss_pred             hCCCCHHHHHHHHHhhhcCCCChhHHHhhhccchhHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 017157          287 KKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQASKQWLRSQGAPKETRKSRIIHWLQYRGFNWCVTSFI  366 (376)
Q Consensus       287 qKGId~eiIeeALee~~eeeeedEE~e~a~~Lak~~le~Ll~~AeKk~~R~~~~~~~k~rqKlir~L~RKGFs~d~I~~v  366 (376)
                      +|||+.++|+++|+++.  .  |+ .+           .+..+++|++.+....+. +.++|++++|+||||++++|..+
T Consensus        87 ~kGi~~~~I~~~l~~~~--~--d~-~e-----------~a~~~~~k~~~~~~~~~~-~~k~Ki~~~L~rkGF~~~~I~~~  149 (157)
T PRK00117         87 QKGVDREIIEEALAELD--I--DW-EE-----------LARELARKKFRRPLPDDA-KEKAKLVRFLARRGFSMDVIQRV  149 (157)
T ss_pred             HcCCCHHHHHHHHHHcC--c--cH-HH-----------HHHHHHHHHcCCCCCCCH-HHHHHHHHHHHHCCCCHHHHHHH
Confidence            99999999999999874  1  22 12           345667788776655556 89999999999999999999999


Q ss_pred             HHhhhhc
Q 017157          367 LKKLESQ  373 (376)
Q Consensus       367 L~eie~e  373 (376)
                      |++..++
T Consensus       150 l~~~~~~  156 (157)
T PRK00117        150 LRNALDD  156 (157)
T ss_pred             HHhhhcc
Confidence            9987654

>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]

Probab=99.97  E-value=4e-30  Score=234.29  Aligned_cols=153  Identities=32%  Similarity=0.491  Sum_probs=132.2

Q ss_pred             HHHHHHHHHHHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHhhhhcCCccHHHHHHHH
Q 017157          206 AKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQAL  285 (376)
Q Consensus       206 ~~~~~~A~~~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD~ryAesyvrsr~~~kg~GprkIrqeL  285 (376)
                      ...+..++++||++|++|+||++||+.||.++|+++++|+.||.+|.++|||||.+||++|++++.+ +++||++|+|+|
T Consensus        16 ~~~~~~~~~~Al~~Ls~R~rse~ELr~kL~k~~~~~~~Ie~Vi~~l~~~~~ldD~~fAe~~i~~r~~-~g~G~~rl~qeL   94 (174)
T COG2137          16 SDQYAKGLNRALRLLSRRDRSEKELRRKLAKKEFSEEIIEEVIDRLAEEGYLDDTRFAEAYIRSRSR-KGKGPARLKQEL   94 (174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHh-cccChHHHHHHH
Confidence            3358899999999999999999999999999999999999999999999999999999999999998 669999999999


Q ss_pred             HhCCCCHHHHHHHHHhhhcCCCChhHHHhhhccchhHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhCCCCHHHHHH
Q 017157          286 FKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQASKQWLRSQGAPKETRKSRIIHWLQYRGFNWCVTSF  365 (376)
Q Consensus       286 rqKGId~eiIeeALee~~eeeeedEE~e~a~~Lak~~le~Ll~~AeKk~~R~~~~~~~k~rqKlir~L~RKGFs~d~I~~  365 (376)
                      .+|||+.++|++||+..+++   +|            .+.+...+.+++.+....++.+.++|++++|++|||++++|..
T Consensus        95 ~qkGi~~~~Ie~aL~~~~~~---~~------------~~~a~~~~~kk~~~~~~~~~~~~k~Ki~r~L~~rGFs~~~i~~  159 (174)
T COG2137          95 KQKGIDDEIIEEALELIDEE---DE------------QERARKVLRKKFKRENKPPDKKEKAKIQRFLLRRGFSYEVIKE  159 (174)
T ss_pred             HHcCCCHHHHHHHHhccchH---HH------------HHHHHHHHHHHhCccccCcchhHHHHHHHHHHHcCCCHHHHHH
Confidence            99999999999999865432   22            1233445566655443345678999999999999999999999


Q ss_pred             HHHhhhhcC
Q 017157          366 ILKKLESQY  374 (376)
Q Consensus       366 vL~eie~e~  374 (376)
                      ++...+++.
T Consensus       160 ~l~~~~~~~  168 (174)
T COG2137         160 ALNEAEEEE  168 (174)
T ss_pred             HHHHhhhcc
Confidence            999987653

>PRK14135 recX recombination regulator RecX; Provisional

Probab=99.96  E-value=3.7e-29  Score=238.31  Aligned_cols=188  Identities=30%  Similarity=0.361  Sum_probs=156.3

Q ss_pred             ccccchhhhhhcc-cccccccccccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHH
Q 017157          156 NILLDAAKQEFGE-EISCEHGLFEESEVFEEPQEVAEEMKILQQKDFYLQAAKARQDAENLAVKLLATRAFTAVEMRKKL  234 (376)
Q Consensus       156 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~A~~~AL~lLsrRdrS~~ELr~KL  234 (376)
                      +|.+|+-..-..+ ++...+++..+   +|.+++.+.+          ........+|+++|+++|++++||..||++||
T Consensus        15 ~v~ld~~~~~~~~~~~~~~~~L~~g---~~l~~~~~~~----------i~~~~~~~~a~~~Al~~L~~r~~s~~el~~kL   81 (263)
T PRK14135         15 NIFLDEKYAFSVDEDTLVKFMLKKG---KELDEEDLEE----------IQYADQVSKGKNLALYYLSYQMRTEKEVRDYL   81 (263)
T ss_pred             EEEEcCCeEEEeeHHHHHHhcCcCC---CcCCHHHHHH----------HHHHHHHHHHHHHHHHHhhhccccHHHHHHHH
Confidence            4777775554445 66666888744   8998888875          44445788999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHhhhhcCCccHHHHHHHHHhCCCCHHHHHHHHHhhhcCCCChhHHHh
Q 017157          235 NGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQES  314 (376)
Q Consensus       235 ~~KG~sediIe~VLe~L~e~GyLDD~ryAesyvrsr~~~kg~GprkIrqeLrqKGId~eiIeeALee~~eeeeedEE~e~  314 (376)
                      .++|+++++|+.||++|++.|||||.+||++|++++++.+++|+++|+++|++|||+.++|++||+++.++   ++    
T Consensus        82 ~~kg~~~~~Ie~vl~~l~~~~~ldD~~~a~~~~~~~~~~~~~g~~~I~~kL~~kGi~~~~Ie~~l~~l~~~---~~----  154 (263)
T PRK14135         82 KKHEISEEIISEVIDKLKEEKYIDDKEYAESYVRTNINTGDKGPRVIKQKLLQKGIEDEIIEEALSEYTEE---DQ----  154 (263)
T ss_pred             HHCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHcCCCHHHHHHHHHhCChh---hH----
Confidence            99999999999999999999999999999999999987667999999999999999999999999986321   11    


Q ss_pred             hhccchhHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 017157          315 KLGMSKHSIDRLFVQASKQWLRSQGAPKETRKSRIIHWLQYRGFNWCVTSFILKKLE  371 (376)
Q Consensus       315 a~~Lak~~le~Ll~~AeKk~~R~~~~~~~k~rqKlir~L~RKGFs~d~I~~vL~eie  371 (376)
                              ++.+...+++++.++...+....++|++++|++|||++++|..+|++++
T Consensus       155 --------~d~a~~~~~k~~~~~~~~~~~~~k~Ki~~~L~rkGf~~~~I~~~l~~~~  203 (263)
T PRK14135        155 --------IEVAQKLAEKLLKKYQKLPFKALKQKIIQSLLTKGFSYEVIKAALEELD  203 (263)
T ss_pred             --------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHcc
Confidence                    2223344566655554456667899999999999999999999999875

>PRK14136 recX recombination regulator RecX; Provisional

Probab=99.96  E-value=7.8e-29  Score=241.60  Aligned_cols=148  Identities=18%  Similarity=0.263  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHhhhhcCCccHHHHHHHH
Q 017157          206 AKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQAL  285 (376)
Q Consensus       206 ~~~~~~A~~~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD~ryAesyvrsr~~~kg~GprkIrqeL  285 (376)
                      -.+...++++||+||++|+||+.||++||.++||++++|+.||++|+++|||||.+||++||+.+.  ++|||++|+++|
T Consensus       158 ~~~~~~lk~kAL~lLSrReRSe~ELr~KL~kkG~~ee~IE~VIerLke~gYLDDeRFAesyVr~R~--~kkGp~rIrqEL  235 (309)
T PRK14136        158 SRPARSLKGRALGYLSRREYSRAELARKLAPYADESDSVEPLLDALEREGWLSDARFAESLVHRRA--SRVGSARIVSEL  235 (309)
T ss_pred             cccHHHHHHHHHHHhhcccccHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHh--hchhHHHHHHHH
Confidence            346788999999999999999999999999999999999999999999999999999999998876  469999999999


Q ss_pred             HhCCCCHHHHHHHHHhhhcCCCChhHHHhhhccchhHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhCCCCHHHHHH
Q 017157          286 FKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQASKQWLRSQGAPKETRKSRIIHWLQYRGFNWCVTSF  365 (376)
Q Consensus       286 rqKGId~eiIeeALee~~eeeeedEE~e~a~~Lak~~le~Ll~~AeKk~~R~~~~~~~k~rqKlir~L~RKGFs~d~I~~  365 (376)
                      ++|||+.++|+++|+++.+    +| .           +.+..+++|++....  ...+.++|+++||++|||++++|..
T Consensus       236 rQKGId~eLIEqALeeieE----DE-~-----------E~A~~L~eKK~~~~~--~d~kek~K~iRfL~rRGFS~D~I~~  297 (309)
T PRK14136        236 KRHAVGDALVESVGAQLRE----TE-F-----------ERAQAVWRKKFGALP--QTPAERAKQARFLAARGFSSATIVK  297 (309)
T ss_pred             HHcCCCHHHHHHHHHhccH----hH-H-----------HHHHHHHHHHhcccC--cCHHHHHHHHHHHHHCCCCHHHHHH
Confidence            9999999999999997621    23 2           234555667764332  2346788999999999999999999


Q ss_pred             HHHhhhhc
Q 017157          366 ILKKLESQ  373 (376)
Q Consensus       366 vL~eie~e  373 (376)
                      +|+.+..+
T Consensus       298 vLk~~~de  305 (309)
T PRK14136        298 LLKVGDDE  305 (309)
T ss_pred             HHHhchhc
Confidence            99987554

>PRK14137 recX recombination regulator RecX; Provisional

Probab=99.96  E-value=2.6e-28  Score=226.03  Aligned_cols=146  Identities=23%  Similarity=0.317  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHhhhhcCCccHHHHHHHHH
Q 017157          207 KARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQALF  286 (376)
Q Consensus       207 ~~~~~A~~~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD~ryAesyvrsr~~~kg~GprkIrqeLr  286 (376)
                      ....+++++|+++|++|+||++||++||.++|+++++|+.||++|+++|||||.+||+.|..   . ++|||++|+++|+
T Consensus        37 e~~~~~~~~Al~~Ls~R~rS~~ELr~KL~~kg~~~e~Ie~vI~rL~e~gyLDD~rfAe~~~~---~-k~~Gp~rI~~eL~  112 (195)
T PRK14137         37 EAREALLAYAFRALAARAMTAAELRAKLERRSEDEALVTEVLERVQELGYQDDAQVARAENS---R-RGVGALRVRQTLR  112 (195)
T ss_pred             HHHHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH---h-cCchHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999999832   3 7899999999999


Q ss_pred             hCCCCHHHHHHHHHhhhcCCCChhHHHhhhccchhHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 017157          287 KKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQASKQWLRSQGAPKETRKSRIIHWLQYRGFNWCVTSFI  366 (376)
Q Consensus       287 qKGId~eiIeeALee~~eeeeedEE~e~a~~Lak~~le~Ll~~AeKk~~R~~~~~~~k~rqKlir~L~RKGFs~d~I~~v  366 (376)
                      +|||+.++|+++|++++.+   +| .           +.+...++|++.....  ..+.++|+++||++|||++++|..+
T Consensus       113 qKGI~~~lI~~al~~~d~e---de-~-----------e~a~~l~~KK~~~~~~--~~~~k~K~~~~L~rRGFs~~~I~~a  175 (195)
T PRK14137        113 RRGVEETLIEETLAARDPQ---EE-Q-----------QEARNLLERRWSSFAR--KRDPRASAYAFLARRGFSGAVIWPA  175 (195)
T ss_pred             HcCCCHHHHHHHHHhcCch---hH-H-----------HHHHHHHHHhccccCc--chhHHHHHHHHHHHCCCCHHHHHHH
Confidence            9999999999999986321   12 2           2345556676654322  2356899999999999999999999


Q ss_pred             HHhhhhc
Q 017157          367 LKKLESQ  373 (376)
Q Consensus       367 L~eie~e  373 (376)
                      |+.+..+
T Consensus       176 l~~~~~~  182 (195)
T PRK14137        176 IREVAAL  182 (195)
T ss_pred             HHHHHHh
Confidence            9987543

>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []

Probab=99.93  E-value=1.8e-25  Score=190.59  Aligned_cols=118  Identities=36%  Similarity=0.563  Sum_probs=95.7

Q ss_pred             HhcCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHhhhhcCCccHHHHHHHHHhCCCCHHHHHHHHHhhhcCCCChhHHH
Q 017157          234 LNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQE  313 (376)
Q Consensus       234 L~~KG~sediIe~VLe~L~e~GyLDD~ryAesyvrsr~~~kg~GprkIrqeLrqKGId~eiIeeALee~~eeeeedEE~e  313 (376)
                      |.+||+++++|+.||++|+++|||||.+||+.|++++++.+++||++|+++|++|||+.++|+++++++      ++ . 
T Consensus         1 L~~kg~~~e~I~~vi~~l~~~gyidD~~ya~~~v~~~~~~~~~G~~~I~~~L~~kGi~~~~i~~~l~~~------~~-~-   72 (121)
T PF02631_consen    1 LKRKGFSEEAIEEVIDRLKELGYIDDERYAESYVRSRLRRKGKGPRRIRQKLKQKGIDREIIEEALEEY------DE-E-   72 (121)
T ss_dssp             HHHTT--HHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHTT--HHHHHHHHTCS-------H-H-
T ss_pred             CcccCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcccccccHHHHHHHHHHHCCChHHHHHHHHHh------hH-H-
Confidence            788999999999999999999999999999999999998789999999999999999999999999842      22 1 


Q ss_pred             hhhccchhHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 017157          314 SKLGMSKHSIDRLFVQASKQWLRSQGAPKETRKSRIIHWLQYRGFNWCVTSFILKK  369 (376)
Q Consensus       314 ~a~~Lak~~le~Ll~~AeKk~~R~~~~~~~k~rqKlir~L~RKGFs~d~I~~vL~e  369 (376)
                                +.+.+.++|++.+....++.+.++|++++|+||||++++|..+|++
T Consensus        73 ----------e~a~~~~~kk~~~~~~~~~~~~~~K~~~~L~rrGF~~~~i~~vi~~  118 (121)
T PF02631_consen   73 ----------EEALELAEKKYRRYRKPSDRKRKQKLIRFLMRRGFSYDVIRRVISE  118 (121)
T ss_dssp             ----------HHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHTT--HHHHHHHCHH
T ss_pred             ----------HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCCHHHHHHHHhh
Confidence                      1245667888877756677899999999999999999999999998

The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.

>PRK14135 recX recombination regulator RecX; Provisional

Probab=99.84  E-value=3e-20  Score=177.17  Aligned_cols=155  Identities=17%  Similarity=0.174  Sum_probs=125.8

Q ss_pred             HHHHHHHHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccHH-HHHHHHHHhhhhc-CCccHHHHHHHHH
Q 017157          209 RQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDS-LYAESYSRSRWSS-ASWGPRRIKQALF  286 (376)
Q Consensus       209 ~~~A~~~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD~-ryAesyvrsr~~~-kg~GprkIrqeLr  286 (376)
                      ..=|..++-.++..+.+|+.+|+++|.+||+++++|+.+|+.+.+.+|+||. ++|+.+.+..... ...++++|.+.|+
T Consensus       107 ~~~a~~~~~~~~~~~~~g~~~I~~kL~~kGi~~~~Ie~~l~~l~~~~~~d~a~~~~~k~~~~~~~~~~~~~k~Ki~~~L~  186 (263)
T PRK14135        107 KEYAESYVRTNINTGDKGPRVIKQKLLQKGIEDEIIEEALSEYTEEDQIEVAQKLAEKLLKKYQKLPFKALKQKIIQSLL  186 (263)
T ss_pred             HHHHHHHHHHHHhccccchHHHHHHHHHcCCCHHHHHHHHHhCChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            4556777777888788999999999999999999999999999999999996 5777777655311 1246789999999


Q ss_pred             hCCCCHHHHHHHHHhhhcCCCChhHHHhhhccchhHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 017157          287 KKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQASKQWLRSQGAPKETRKSRIIHWLQYRGFNWCVTSFI  366 (376)
Q Consensus       287 qKGId~eiIeeALee~~eeeeedEE~e~a~~Lak~~le~Ll~~AeKk~~R~~~~~~~k~rqKlir~L~RKGFs~d~I~~v  366 (376)
                      +|||+.++|..||+++..+.+++++           .+.+...++++++++...++.+.++|+++||+||||++++|..+
T Consensus       187 rkGf~~~~I~~~l~~~~~e~d~~~e-----------~e~l~~~~~k~~~k~~~~~~~k~k~K~~~~L~rrGF~~~~I~~~  255 (263)
T PRK14135        187 TKGFSYEVIKAALEELDLEQDEEEE-----------QELLQKELEKAYRKYSKYDGYELKQKLKQALYRKGFSYDDIDSF  255 (263)
T ss_pred             hCCCCHHHHHHHHHHcccCCChHHH-----------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            9999999999999997544332221           23455667788877766677889999999999999999999999


Q ss_pred             HHhhhhcC
Q 017157          367 LKKLESQY  374 (376)
Q Consensus       367 L~eie~e~  374 (376)
                      |+++++++
T Consensus       256 l~~~~~~~  263 (263)
T PRK14135        256 LREYGIED  263 (263)
T ss_pred             HHHhccCC
Confidence            99987763

>PRK14134 recX recombination regulator RecX; Provisional

Probab=99.59  E-value=3.9e-14  Score=138.09  Aligned_cols=147  Identities=16%  Similarity=0.204  Sum_probs=107.5

Q ss_pred             ccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHhhhhcC-C------ccHHHHHHHHHhCCCCHHHHH
Q 017157          224 AFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSA-S------WGPRRIKQALFKKGISQTDAK  296 (376)
Q Consensus       224 drS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD~ryAesyvrsr~~~k-g------~GprkIrqeLrqKGId~eiIe  296 (376)
                      .+|+..|++.|.+||+++++|+.+|+.+..   -+....|...+..++... .      .-.++|.+.|.+||++.++|.
T Consensus       124 ~~G~~~I~~eL~qKGI~~~iIe~al~~~~~---e~e~e~a~~l~~Kk~~~~~~~~~~~~k~k~Kl~~~L~rrGFs~~~I~  200 (283)
T PRK14134        124 SYGRNKIKYTLLNKGIKENIIIEKINNIDE---EKEKKVAYKLAEKKYKILILSEKNKFKIYKKLGPYLISRGYSSNIAE  200 (283)
T ss_pred             hhhHHHHHHHHHHCCCCHHHHHHHHHhCCh---hhHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHCCCCHHHHH
Confidence            589999999999999999999999986522   233466677777665421 1      135789999999999999999


Q ss_pred             HHHHhhhcCCCChhHHH---hhhccchhHHHHHHHHHHHHHhhccC--CChHHHHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 017157          297 KAVNLVFRDGESDEDQE---SKLGMSKHSIDRLFVQASKQWLRSQG--APKETRKSRIIHWLQYRGFNWCVTSFILKKLE  371 (376)
Q Consensus       297 eALee~~eeeeedEE~e---~a~~Lak~~le~Ll~~AeKk~~R~~~--~~~~k~rqKlir~L~RKGFs~d~I~~vL~eie  371 (376)
                      .||.++..+++.+++..   .-.+..-+.++.+...|+|++.+...  .+..+.++|+++||+||||+|++|+.+|+++.
T Consensus       201 ~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~kr~~~~~~~e~d~~k~~~Kl~~~L~rkGf~~e~I~~vl~~~~  280 (283)
T PRK14134        201 WILNELIKNEALYKDNNSQNIENNIKDENIEELHNLARKRYDIIIKSEDDKNKIYRRLSNYLLRRGYSWEEVKKSLNELL  280 (283)
T ss_pred             HHHHHHHhHhhhhhhccccchhhccccChHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence            99999854332111100   00001112467788889999877632  33457899999999999999999999999986


Q ss_pred             hc
Q 017157          372 SQ  373 (376)
Q Consensus       372 ~e  373 (376)
                      .+
T Consensus       281 ~~  282 (283)
T PRK14134        281 YE  282 (283)
T ss_pred             cc
Confidence            54

>PRK00117 recX recombination regulator RecX; Reviewed

Probab=98.56  E-value=4.8e-07  Score=80.39  Aligned_cols=78  Identities=15%  Similarity=0.314  Sum_probs=66.7

Q ss_pred             HhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHhhhhcCCcc-----HHHHHHHHHhCCCCHHHH
Q 017157          221 ATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWG-----PRRIKQALFKKGISQTDA  295 (376)
Q Consensus       221 srRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD~ryAesyvrsr~~~kg~G-----prkIrqeLrqKGId~eiI  295 (376)
                      ..+.+++..|+++|.+||++.++|+.+|+.+.    .|+...|...+..+++ +..+     .++|.+.|.+|||+.++|
T Consensus        72 ~~~~~g~~~I~~~L~~kGi~~~~I~~~l~~~~----~d~~e~a~~~~~k~~~-~~~~~~~~~k~Ki~~~L~rkGF~~~~I  146 (157)
T PRK00117         72 ARKGYGPRRIRQELRQKGVDREIIEEALAELD----IDWEELARELARKKFR-RPLPDDAKEKAKLVRFLARRGFSMDVI  146 (157)
T ss_pred             HhCCchHHHHHHHHHHcCCCHHHHHHHHHHcC----ccHHHHHHHHHHHHcC-CCCCCCHHHHHHHHHHHHHCCCCHHHH
Confidence            45789999999999999999999999999873    6777888888887765 3233     489999999999999999


Q ss_pred             HHHHHhhh
Q 017157          296 KKAVNLVF  303 (376)
Q Consensus       296 eeALee~~  303 (376)
                      ..+|++..
T Consensus       147 ~~~l~~~~  154 (157)
T PRK00117        147 QRVLRNAL  154 (157)
T ss_pred             HHHHHhhh
Confidence            99998854

>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]

Probab=98.21  E-value=9.8e-06  Score=74.62  Aligned_cols=92  Identities=16%  Similarity=0.197  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHhhhhcCC--cc---HHHHHHHHH
Q 017157          212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS--WG---PRRIKQALF  286 (376)
Q Consensus       212 A~~~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD~ryAesyvrsr~~~kg--~G---prkIrqeLr  286 (376)
                      |..++-...... +++.-|+++|.+||+++++|+.+|+..   ...+....|...+..++....  +.   +.+|.+.|.
T Consensus        73 Ae~~i~~r~~~g-~G~~rl~qeL~qkGi~~~~Ie~aL~~~---~~~~~~~~a~~~~~kk~~~~~~~~~~~~k~Ki~r~L~  148 (174)
T COG2137          73 AEAYIRSRSRKG-KGPARLKQELKQKGIDDEIIEEALELI---DEEDEQERARKVLRKKFKRENKPPDKKEKAKIQRFLL  148 (174)
T ss_pred             HHHHHHHHHhcc-cChHHHHHHHHHcCCCHHHHHHHHhcc---chHHHHHHHHHHHHHHhCccccCcchhHHHHHHHHHH
Confidence            334444444444 779999999999999999999999855   566777778888888765332  33   679999999


Q ss_pred             hCCCCHHHHHHHHHhhhcCCC
Q 017157          287 KKGISQTDAKKAVNLVFRDGE  307 (376)
Q Consensus       287 qKGId~eiIeeALee~~eeee  307 (376)
                      .|||+.++|..+|.++.++.+
T Consensus       149 ~rGFs~~~i~~~l~~~~~~~~  169 (174)
T COG2137         149 RRGFSYEVIKEALNEAEEEED  169 (174)
T ss_pred             HcCCCHHHHHHHHHHhhhccc
Confidence            999999999999999866543

>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []

Probab=98.19  E-value=8.1e-06  Score=69.67  Aligned_cols=86  Identities=15%  Similarity=0.222  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHhhhhcC-----CccHHHHHHH
Q 017157          210 QDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSA-----SWGPRRIKQA  284 (376)
Q Consensus       210 ~~A~~~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD~ryAesyvrsr~~~k-----g~GprkIrqe  284 (376)
                      .=|..++-..+..+.+|+..|+++|.+||+++++|+.+|+      -++....|...++.++...     ...++++.+.
T Consensus        28 ~ya~~~v~~~~~~~~~G~~~I~~~L~~kGi~~~~i~~~l~------~~~~~e~a~~~~~kk~~~~~~~~~~~~~~K~~~~  101 (121)
T PF02631_consen   28 RYAESYVRSRLRRKGKGPRRIRQKLKQKGIDREIIEEALE------EYDEEEEALELAEKKYRRYRKPSDRKRKQKLIRF  101 (121)
T ss_dssp             HHHHHHHHHHHHHTT--HHHHHHHHHHTT--HHHHHHHHT------CS-HHHHHHHHHHHHHHHTTTS-CHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccccHHHHHHHHHHHCCChHHHHHHHH------HhhHHHHHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence            3345566667777899999999999999999999999999      3344444666666665532     2468899999


Q ss_pred             HHhCCCCHHHHHHHHHh
Q 017157          285 LFKKGISQTDAKKAVNL  301 (376)
Q Consensus       285 LrqKGId~eiIeeALee  301 (376)
                      |.+||++.++|..+|.+
T Consensus       102 L~rrGF~~~~i~~vi~~  118 (121)
T PF02631_consen  102 LMRRGFSYDVIRRVISE  118 (121)
T ss_dssp             HHHTT--HHHHHHHCHH
T ss_pred             HHHCCCCHHHHHHHHhh
Confidence            99999999999999987

The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.

>PRK14137 recX recombination regulator RecX; Provisional

Probab=97.85  E-value=4.2e-05  Score=71.50  Aligned_cols=80  Identities=20%  Similarity=0.207  Sum_probs=63.4

Q ss_pred             hcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHhhhhc---CCccHHHHHHHHHhCCCCHHHHHHH
Q 017157          222 TRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSS---ASWGPRRIKQALFKKGISQTDAKKA  298 (376)
Q Consensus       222 rRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD~ryAesyvrsr~~~---kg~GprkIrqeLrqKGId~eiIeeA  298 (376)
                      .+.+++..|+++|.+||+++++|+.+|+.+.   ..+...-|...+..++..   ...-.+++.+.|++|||+.++|..|
T Consensus        99 ~k~~Gp~rI~~eL~qKGI~~~lI~~al~~~d---~ede~e~a~~l~~KK~~~~~~~~~~k~K~~~~L~rRGFs~~~I~~a  175 (195)
T PRK14137         99 RRGVGALRVRQTLRRRGVEETLIEETLAARD---PQEEQQEARNLLERRWSSFARKRDPRASAYAFLARRGFSGAVIWPA  175 (195)
T ss_pred             hcCchHHHHHHHHHHcCCCHHHHHHHHHhcC---chhHHHHHHHHHHHhccccCcchhHHHHHHHHHHHCCCCHHHHHHH
Confidence            4678999999999999999999999998652   223456666777666542   1234688999999999999999999


Q ss_pred             HHhhhc
Q 017157          299 VNLVFR  304 (376)
Q Consensus       299 Lee~~e  304 (376)
                      |..+..
T Consensus       176 l~~~~~  181 (195)
T PRK14137        176 IREVAA  181 (195)
T ss_pred             HHHHHH
Confidence            998644

>PRK14136 recX recombination regulator RecX; Provisional

Probab=97.61  E-value=0.00017  Score=71.66  Aligned_cols=76  Identities=12%  Similarity=0.123  Sum_probs=60.1

Q ss_pred             ccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHhhhhcC---CccHHHHHHHHHhCCCCHHHHHHHHH
Q 017157          224 AFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSA---SWGPRRIKQALFKKGISQTDAKKAVN  300 (376)
Q Consensus       224 drS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD~ryAesyvrsr~~~k---g~GprkIrqeLrqKGId~eiIeeALe  300 (376)
                      .+++..|+++|.+||++.++|+.+|+.+.    .++...|...++.++...   ..-.+++.+.|++|||+.++|..+|.
T Consensus       225 kkGp~rIrqELrQKGId~eLIEqALeeie----EDE~E~A~~L~eKK~~~~~~d~kek~K~iRfL~rRGFS~D~I~~vLk  300 (309)
T PRK14136        225 RVGSARIVSELKRHAVGDALVESVGAQLR----ETEFERAQAVWRKKFGALPQTPAERAKQARFLAARGFSSATIVKLLK  300 (309)
T ss_pred             chhHHHHHHHHHHcCCCHHHHHHHHHhcc----HhHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            38999999999999999999999999662    244566666776665421   12357888999999999999999998


Q ss_pred             hhh
Q 017157          301 LVF  303 (376)
Q Consensus       301 e~~  303 (376)
                      ...
T Consensus       301 ~~~  303 (309)
T PRK14136        301 VGD  303 (309)
T ss_pred             hch
Confidence            754

>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family

Probab=82.78  E-value=25  Score=30.69  Aligned_cols=43  Identities=12%  Similarity=0.318  Sum_probs=35.3

Q ss_pred             HHHHH-HhcccCHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCCcc
Q 017157          216 AVKLL-ATRAFTAVEMRKKLN-GKKFPSHVIEAVITDFQSRGLIN  258 (376)
Q Consensus       216 AL~lL-srRdrS~~ELr~KL~-~KG~sediIe~VLe~L~e~GyLD  258 (376)
                      .|..| .....|..+|.+.|. .+|+....|..+|.+|.+.|||.
T Consensus         9 VM~vlW~~~~~t~~eI~~~l~~~~~~~~tTv~T~L~rL~~KG~v~   53 (130)
T TIGR02698         9 VMRVVWTLGETTSRDIIRILAEKKDWSDSTIKTLLGRLVDKGCLT   53 (130)
T ss_pred             HHHHHHcCCCCCHHHHHHHHhhccCCcHHHHHHHHHHHHHCCcee
Confidence            34444 455679999999995 45899999999999999999996

This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI.

>PF07553 Lipoprotein_Ltp: Host cell surface-exposed lipoprotein; InterPro: IPR011434 This domain is found as 1-3 copies in a small family of proteins of unknown function

Probab=80.94  E-value=4.4  Score=30.11  Aligned_cols=42  Identities=14%  Similarity=0.200  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHhcccCHHHHHHHHhcC---CCCHHHHHHHHHHH
Q 017157          210 QDAENLAVKLLATRAFTAVEMRKKLNGK---KFPSHVIEAVITDF  251 (376)
Q Consensus       210 ~~A~~~AL~lLsrRdrS~~ELr~KL~~K---G~sediIe~VLe~L  251 (376)
                      +.|..+|-.|+.....|...|+..|..-   ||+++.++-+|+.|
T Consensus         4 ~~Al~~Ak~Y~~~~~~Sk~~l~~QL~se~ge~Ft~e~A~YAv~~l   48 (48)
T PF07553_consen    4 KNALKKAKSYLKTMHMSKQGLYDQLTSEYGEGFTEEEAQYAVDHL   48 (48)
T ss_pred             HHHHHHHHHHHHhccCCHHHHHHHHHhhcccCCCHHHHHHHHHcC
Confidence            5688889999999999999999999876   99999999998754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	376
3e3v_A	177	Regulatory protein RECX; PSI-II, NYSGXRC, structur	3e-32
3d5l_A	221	Regulatory protein RECX; PSI-II, NYSGXRC, DNA repa	6e-32
3dfg_A	162	Xcrecx, regulatory protein RECX; RECX RECA, homolo	1e-24
3c1d_A	159	Protein ORAA, regulatory protein RECX; tandem repe	1e-22
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05

>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius} Length = 177

 Score =  118 bits (297), Expect = 3e-32
 Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 15/169 (8%)

Query: 203 LQAAKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLY 262
           ++ A       N A+  L+ +  T  E+  KL         I  +I       LIND  Y
Sbjct: 11  IKLADDISKGYNAALNYLSYQLRTRKEVEDKLRSLDIHEDYISEIINKLIDLDLINDKNY 70

Query: 263 AESYSRSRWSSASWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHS 322
           AESY R+  +++  GP+ IK  L KKGI    A+ A+          +  +         
Sbjct: 71  AESYVRTMMNTSDKGPKVIKLNLSKKGIDDNIAEDALI------LYTDKLQ--------- 115

Query: 323 IDRLFVQASKQWLRSQGAPKETRKSRIIHWLQYRGFNWCVTSFILKKLE 371
           +++    A K   R        ++++I   L  +GF++ +   I+++L+
Sbjct: 116 VEKGVTLAEKLANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQELD 164

>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri} Length = 221

 Score =  119 bits (299), Expect = 6e-32
 Identities = 42/206 (20%), Positives = 85/206 (41%), Gaps = 28/206 (13%)

Query: 168 EEISCEHGLFEESEVFEEPQEVAEEMKILQQKDFYLQAAKARQDAENLAVKLLATRAFTA 227
           E +  +  L + +E+ E+      ++  +   D           A +  +  L+ +  T 
Sbjct: 32  ESVLIQFRLMKGTELDEK------QIAAIATADQQ-------AKAYSRMLDYLSYQMRTE 78

Query: 228 VEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQALFK 287
            ++ KKL     P   +E ++   + + LI+D  YA SY R+  ++   GP  I+Q L +
Sbjct: 79  SDIVKKLKEIDTPEEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLKGPGIIRQHLRQ 138

Query: 288 KGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQASKQWLRSQGAPKETRKS 347
           KGI ++D   A+       +   + +          +     A K + R +  P+  R+ 
Sbjct: 139 KGIGESDIDDALT------QFTPEVQ---------AELAKKLALKLFRRYRNQPERRREQ 183

Query: 348 RIIHWLQYRGFNWCVTSFILKKLESQ 373
           ++   L  +GF+  V   I  ++  Q
Sbjct: 184 KVQQGLTTKGFSSSVYEMIKDEVVPQ 209

>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV} Length = 162

 Score = 97.8 bits (244), Expect = 1e-24
 Identities = 30/166 (18%), Positives = 52/166 (31%), Gaps = 24/166 (14%)

Query: 206 AKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAES 265
               Q     A+ LL  R  +  E+ +KL  +       +A +      G  +D  +A S
Sbjct: 13  RFKEQTPVQRALGLLVHREHSKKELNRKLQARGIEPEAAQAAVERLAGEGWQDDVRFAAS 72

Query: 266 YSRSRWSSASWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDR 325
             R+R +S+ +GP  I+  L   G+       A+         + D              
Sbjct: 73  VVRNR-ASSGYGPLHIRAELGTHGLDSDAVSAAMA------TFEGDWTE----------- 114

Query: 326 LFVQASKQWLRSQGAPKET---RKSRIIHWLQYRGFNWCVTSFILK 368
               A     R  G        ++ +    L  RGF+        +
Sbjct: 115 ---NALDLIRRRFGEDGPVDLAQRRKAADLLARRGFDGNSIRLATR 157

>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli} Length = 159

 Score = 92.0 bits (229), Expect = 1e-22
 Identities = 46/179 (25%), Positives = 68/179 (37%), Gaps = 34/179 (18%)

Query: 206 AKARQDAENLAVKLLATRAFTAVEMRKKLNGKK----------FPSHVIEAVITDFQSRG 255
             A     + AV++LA R  +  E+R+KL                +   E VI      G
Sbjct: 1   GPAYARLLDRAVRILAVRDHSEQELRRKLAAPIMGKNGPEEIDATAEDYERVIAWCHEHG 60

Query: 256 LINDSLYAESYSRSRWSSASWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESK 315
            ++DS +   +  SR     +GP RI+Q L +KGIS+   +KA+       E+D D    
Sbjct: 61  YLDDSRFVARFIASRSRK-GYGPARIRQELNQKGISREATEKAMR------EADIDW--- 110

Query: 316 LGMSKHSIDRLFVQASKQWLRSQGAPKET---RKSRIIHWLQYRGFNWCVTSFILKKLE 371
                         A  Q  R  G P  T    K +I  +L YRG+       I +   
Sbjct: 111 -----------AALARDQATRKYGEPLPTVFSEKVKIQRFLLYRGYLMEDIQDIWRNFA 158

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 1e-05
 Identities = 41/251 (16%), Positives = 83/251 (33%), Gaps = 69/251 (27%)

Query: 143 HKKFQ-NHNRMTNNNILLDAAKQEFGEEISCEHGLFEESEVFEEPQEV--AEEMK-ILQQ 198
           H  F+   ++    +IL    +  F +   C+        V + P+ +   EE+  I+  
Sbjct: 6   HMDFETGEHQYQYKDILSVF-EDAFVDNFDCKD-------VQDMPKSILSKEEIDHIIMS 57

Query: 199 KD--------FYLQAAKARQDAENLAVKLLATR-AFTAVEMRKKLNGKKFPSHVIEAVIT 249
           KD        F+   +K  +  +    ++L     F    ++ +      PS +    I 
Sbjct: 58  KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ---PSMMTRMYIE 114

Query: 250 DFQSRGLINDSLYAESYSRSRWSSASWGPR---RIKQALFKKGISQTDAKKAVNLVFRDG 306
             Q   L ND+     Y+ SR        +   +++QAL +        + A N++    
Sbjct: 115 --QRDRLYNDNQVFAKYNVSR-------LQPYLKLRQALLE-------LRPAKNVLID-- 156

Query: 307 ESDEDQESKLGMSKHSIDRLFVQASKQWLRSQGAPKETRKSRI---IHWLQYRGFNWCVT 363
                     G+           + K W+          + ++   I WL  +  N    
Sbjct: 157 ----------GVLG---------SGKTWVALDVCLSYKVQCKMDFKIFWLNLK--NCNSP 195

Query: 364 SFILKKLESQY 374
             +L+ L+   
Sbjct: 196 ETVLEMLQKLL 206

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 47/340 (13%), Positives = 94/340 (27%), Gaps = 97/340 (28%)

Query: 76  QPDASGLRTEVSNSGRDVKKPLKIYEPKNSVPVNGLQ--------RNE--LQKQSDASEL 125
           + +   L + +    R      ++Y  +     N  Q        R +  L+ +    EL
Sbjct: 88  RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147

Query: 126 RTE-------VSNSGRDVKTSFASHKKFQNHNRMTNNNILLDAAKQEFGEEISCEHGLFE 178
           R         V  SG   KT  A                 LD        ++ C+     
Sbjct: 148 RPAKNVLIDGVLGSG---KTWVA-----------------LDVCLS---YKVQCKM---- 180

Query: 179 ESEVF-------EEPQEVAEEMKILQQKDFYLQAAK---ARQD-AENLAVKLLATRAFTA 227
           + ++F         P+ V   +++LQ      Q      +R D + N+ +++ + +A   
Sbjct: 181 DFKIFWLNLKNCNSPETV---LEMLQ--KLLYQIDPNWTSRSDHSSNIKLRIHSIQA--- 232

Query: 228 VEMRKKLNGKKFP-----------SHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASW 276
            E+R+ L  K +            +    A   +   + L+         +R +  +   
Sbjct: 233 -ELRRLLKSKPYENCLLVLLNVQNAKAWNAF--NLSCKILLT--------TRFKQVTDFL 281

Query: 277 GPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQASKQWLR 336
                        IS               E        L      + R  +  + + L 
Sbjct: 282 SAATTTH------ISLDHHSMT----LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331

Query: 337 SQGAPKETRKSRIIHWLQYRGFNWCVTSFILKKLESQYPS 376
                     +   +W         +T+ I   L    P+
Sbjct: 332 IIAESIRDGLATWDNWKHV--NCDKLTTIIESSLNVLEPA 369

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 9e-05
 Identities = 66/476 (13%), Positives = 126/476 (26%), Gaps = 150/476 (31%)

Query: 8   VGLKISPRLEFRGLLIPWISKNNAISCVKGRDYSSSFPVRY-----VPKKSVKIKESENS 62
           V   +    +F  L+ P  ++    S +  R Y       Y       K +V   +    
Sbjct: 83  VEEVLRINYKF--LMSPIKTEQRQPS-MMTRMYIEQRDRLYNDNQVFAKYNVSRLQ---- 135

Query: 63  VPVKGLERN--ELRKQPD-------ASG---LRTEV-SNSGRDVKKPLKIY--------- 100
            P   L +   ELR   +        SG   +  +V  +     K   KI+         
Sbjct: 136 -PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194

Query: 101 ---------------EPKNSVPVNGLQRNELQKQSDASELRTEVSNSG--------RDVK 137
                          +P  +   +     +L+  S  +ELR  + +           +V+
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254

Query: 138 TSFASH-KKFQNHNRM---TNNNILLDAAKQEFGEEISCEHGL--FEESE---------- 181
              A     F    ++   T    + D         IS +H        E          
Sbjct: 255 N--AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 182 --VFEEPQEV-----------AEEMKI-LQQKDFYLQAAKARQDAENLAVKLLATRAFTA 227
               + P+EV           AE ++  L   D +        D     ++  +      
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC---DKLTTIIES-SLNVLEP 368

Query: 228 VEMRK---KL----NGKKFPSHVI------------EAVITDFQSRGLINDSLYAESYS- 267
            E RK   +L         P+ ++              V+       L+       + S 
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428

Query: 268 -----RSRWSSASWGPRRIKQALFKKGISQTDAKKAVN-----LVFRDG----------- 306
                  +           + AL +  +   +  K  +       + D            
Sbjct: 429 PSIYLELK------VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482

Query: 307 ESDEDQESKLGMSKHSIDRLFVQASKQWLRSQGAPKETRKSRIIHWLQ----YRGF 358
             +  +   L      +D  F++  K  +R          S I++ LQ    Y+ +
Sbjct: 483 NIEHPERMTL-FRMVFLDFRFLEQ-K--IRHDSTAWNASGS-ILNTLQQLKFYKPY 533

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	376
3d5l_A	221	Regulatory protein RECX; PSI-II, NYSGXRC, DNA repa	100.0
3e3v_A	177	Regulatory protein RECX; PSI-II, NYSGXRC, structur	100.0
3dfg_A	162	Xcrecx, regulatory protein RECX; RECX RECA, homolo	99.98
3c1d_A	159	Protein ORAA, regulatory protein RECX; tandem repe	99.97
3e3v_A	177	Regulatory protein RECX; PSI-II, NYSGXRC, structur	98.1
3d5l_A	221	Regulatory protein RECX; PSI-II, NYSGXRC, DNA repa	98.02
3c1d_A	159	Protein ORAA, regulatory protein RECX; tandem repe	97.99
3dfg_A	162	Xcrecx, regulatory protein RECX; RECX RECA, homolo	97.9

>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}

Probab=100.00  E-value=2.1e-34  Score=268.44  Aligned_cols=191  Identities=23%  Similarity=0.291  Sum_probs=157.5

Q ss_pred             ccccchhhhhhcc-cccccccccccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHH
Q 017157          156 NILLDAAKQEFGE-EISCEHGLFEESEVFEEPQEVAEEMKILQQKDFYLQAAKARQDAENLAVKLLATRAFTAVEMRKKL  234 (376)
Q Consensus       156 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~A~~~AL~lLsrRdrS~~ELr~KL  234 (376)
                      ||.+|+-..-..+ ++...+++..   ++|.+++.+.+          +....+..+|+++|+++|++|+||..||++||
T Consensus        19 ~I~ld~~~~f~v~~~~l~~~~L~k---g~el~~e~~~~----------i~~~~~~~~a~~~Al~~Ls~r~~S~~EL~~KL   85 (221)
T 3d5l_A           19 NIYLDGKYAFPVAESVLIQFRLMK---GTELDEKQIAA----------IATADQQAKAYSRMLDYLSYQMRTESDIVKKL   85 (221)
T ss_dssp             EEEETTEEEEEEEHHHHHHTTCCT---TCEECHHHHHH----------HHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred             EEEEcCCeeEEeeHHHHHHcCCcC---CCCCCHHHHHH----------HHHhHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence            3778763333333 5556688864   48888777764          55566789999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHhhhhcCCccHHHHHHHHHhCCCCHHHHHHHHHhhhcCCCChhHHHh
Q 017157          235 NGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQES  314 (376)
Q Consensus       235 ~~KG~sediIe~VLe~L~e~GyLDD~ryAesyvrsr~~~kg~GprkIrqeLrqKGId~eiIeeALee~~eeeeedEE~e~  314 (376)
                      .++|+++++|+.||++|++.|||||.+||++|++++++.++|||++|+++|++|||+.++|++||+++.+   ++|    
T Consensus        86 ~~kg~~~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~G~~~I~~eL~~KGI~~~~I~~al~~~~~---~~e----  158 (221)
T 3d5l_A           86 KEIDTPEEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLKGPGIIRQHLRQKGIGESDIDDALTQFTP---EVQ----  158 (221)
T ss_dssp             HHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHTTCCHHHHHHHGGGCCH---HHH----
T ss_pred             HhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHcCCCHHHHHHHHHhCCH---HHH----
Confidence            9999999999999999999999999999999999998778999999999999999999999999998622   122    


Q ss_pred             hhccchhHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHhhhhcC
Q 017157          315 KLGMSKHSIDRLFVQASKQWLRSQGAPKETRKSRIIHWLQYRGFNWCVTSFILKKLESQY  374 (376)
Q Consensus       315 a~~Lak~~le~Ll~~AeKk~~R~~~~~~~k~rqKlir~L~RKGFs~d~I~~vL~eie~e~  374 (376)
                              ++.+...++|++.++...++.+.++|++++|+||||++++|..++++++.+.
T Consensus       159 --------~e~a~~l~~Kk~~~~~~~~~~~~k~K~~~~L~rrGFs~~~I~~vl~~~~~~~  210 (221)
T 3d5l_A          159 --------AELAKKLALKLFRRYRNQPERRREQKVQQGLTTKGFSSSVYEMIKDEVVPQP  210 (221)
T ss_dssp             --------HHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHTTC-----
T ss_pred             --------HHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHhccchh
Confidence                    2345667788887766667788999999999999999999999999885543

>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}

Probab=100.00  E-value=6.8e-34  Score=257.09  Aligned_cols=156  Identities=26%  Similarity=0.328  Sum_probs=137.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHhhhhcCCccHHHHH
Q 017157          203 LQAAKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIK  282 (376)
Q Consensus       203 ~~~~~~~~~A~~~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD~ryAesyvrsr~~~kg~GprkIr  282 (376)
                      +....+..+|+++|++||++|+||..||++||.++|+++++|+.||++|++.|||||.+||++|++++++.++|||++|+
T Consensus        11 i~~~~~~~~a~~~Al~~Ls~r~~S~~EL~~KL~~kg~~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G~~~I~   90 (177)
T 3e3v_A           11 IKLADDISKGYNAALNYLSYQLRTRKEVEDKLRSLDIHEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKGPKVIK   90 (177)
T ss_dssp             --CHHHHHHHHHHHHHHHHSSCCCHHHHHTTSGGGTCCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccccHHHHH
Confidence            55566799999999999999999999999999999999999999999999999999999999999999986689999999


Q ss_pred             HHHHhCCCCHHHHHHHHHhhhcCCCChhHHHhhhccchhHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhCCCCHHH
Q 017157          283 QALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQASKQWLRSQGAPKETRKSRIIHWLQYRGFNWCV  362 (376)
Q Consensus       283 qeLrqKGId~eiIeeALee~~eeeeedEE~e~a~~Lak~~le~Ll~~AeKk~~R~~~~~~~k~rqKlir~L~RKGFs~d~  362 (376)
                      ++|++|||+.++|++||+++.+   ++|            ++.+...++|++.+....++.+.++|+++||+||||++++
T Consensus        91 ~eL~~KGI~~~~I~~al~~~~~---~de------------~e~a~~l~~Kk~~~~~~~~~~~~~~K~~~~L~rrGF~~~~  155 (177)
T 3e3v_A           91 LNLSKKGIDDNIAEDALILYTD---KLQ------------VEKGVTLAEKLANRYSHDSYRNKQNKIKQSLLTKGFSYDI  155 (177)
T ss_dssp             HHHHTTTCCHHHHHHHHTTSCH---HHH------------HHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHHcCCCHHHHHHHHHhCCc---hhH------------HHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCCHHH
Confidence            9999999999999999987532   122            2345666788887766667788999999999999999999


Q ss_pred             HHHHHHhhhhc
Q 017157          363 TSFILKKLESQ  373 (376)
Q Consensus       363 I~~vL~eie~e  373 (376)
                      |..+|++++.+
T Consensus       156 I~~vl~~l~~~  166 (177)
T 3e3v_A          156 IDTIIQELDLI  166 (177)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHCcCC
Confidence            99999998644

>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}

Probab=99.98  E-value=4.7e-32  Score=241.70  Aligned_cols=149  Identities=19%  Similarity=0.259  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHhhhhcCCccHHHHHHHH
Q 017157          206 AKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQAL  285 (376)
Q Consensus       206 ~~~~~~A~~~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD~ryAesyvrsr~~~kg~GprkIrqeL  285 (376)
                      ..+..+|+++|++||++|+||+.||++||.++|+++++|+.||++|++.|||||.+||++|++++++ ++||+++|+++|
T Consensus        13 ~~~~~~a~~~Al~~Ls~r~~s~~EL~~KL~~kg~~~e~Ie~vl~~l~~~g~ldD~rfA~~~v~~~~~-~~~G~~~I~~eL   91 (162)
T 3dfg_A           13 RFKEQTPVQRALGLLVHREHSKKELNRKLQARGIEPEAAQAAVERLAGEGWQDDVRFAASVVRNRAS-SGYGPLHIRAEL   91 (162)
T ss_dssp             ----CCHHHHHHHHHHHSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHT-TTCCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHhhchhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-ccccHHHHHHHH
Confidence            4467889999999999999999999999999999999999999999999999999999999999987 799999999999


Q ss_pred             HhCCCCHHHHHHHHHhhhcCCCChhHHHhhhccchhHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhCCCCHHHHHH
Q 017157          286 FKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQASKQWLRSQGAPKETRKSRIIHWLQYRGFNWCVTSF  365 (376)
Q Consensus       286 rqKGId~eiIeeALee~~eeeeedEE~e~a~~Lak~~le~Ll~~AeKk~~R~~~~~~~k~rqKlir~L~RKGFs~d~I~~  365 (376)
                      ++|||+.++|+++|+++.+    +| .           +.+...++|++.. ...++.+.++|++++|+||||++++|..
T Consensus        92 ~~KGI~~~~I~~al~~~~~----de-~-----------e~a~~l~~Kk~~~-~~~~~~~~k~K~~~~L~rrGF~~~~I~~  154 (162)
T 3dfg_A           92 GTHGLDSDAVSAAMATFEG----DW-T-----------ENALDLIRRRFGE-DGPVDLAQRRKAADLLARRGFDGNSIRL  154 (162)
T ss_dssp             HHTTCCHHHHHHHHTTCCS----CH-H-----------HHHHHHHHHHHCT-TCCCSHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHcCCCHHHHHHHHHhCcH----hH-H-----------HHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHCCCCHHHHHH
Confidence            9999999999999998631    33 2           2345556777654 3345678999999999999999999999


Q ss_pred             HHHhhhh
Q 017157          366 ILKKLES  372 (376)
Q Consensus       366 vL~eie~  372 (376)
                      +|+..++
T Consensus       155 ~l~~~~~  161 (162)
T 3dfg_A          155 ATRFDLE  161 (162)
T ss_dssp             HTTC---
T ss_pred             HHhcCcC
Confidence            9987543

>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}

Probab=99.97  E-value=2.8e-31  Score=235.71  Aligned_cols=146  Identities=27%  Similarity=0.330  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHHHHHhcccCHHHHHHHHhcC-----C-----CCHHHHHHHHHHHHHcCCccHHHHHHHHHHhhhhcCCcc
Q 017157          208 ARQDAENLAVKLLATRAFTAVEMRKKLNGK-----K-----FPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWG  277 (376)
Q Consensus       208 ~~~~A~~~AL~lLsrRdrS~~ELr~KL~~K-----G-----~sediIe~VLe~L~e~GyLDD~ryAesyvrsr~~~kg~G  277 (376)
                      ++.+|+++|++||++|+||..||++||.++     |     +++++|+.||++|++.|||||.+||++|++++++ ++||
T Consensus         3 ~~~~a~~~Al~~Ls~r~~S~~EL~~kL~~k~~~~~g~e~~~~~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~-~g~G   81 (159)
T 3c1d_A            3 AYARLLDRAVRILAVRDHSEQELRRKLAAPIMGKNGPEEIDATAEDYERVIAWCHEHGYLDDSRFVARFIASRSR-KGYG   81 (159)
T ss_dssp             HHHHHHHHHHHHHTTSCCCHHHHHHHHHCC-----------CCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHH-TTCC
T ss_pred             hHHHHHHHHHHHhhcccccHHHHHHHHHHHhhcccCccccCCCHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHh-CCcc
Confidence            578899999999999999999999999996     8     9999999999999999999999999999999997 8899


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHhhhcCCCChhHHHhhhccchhHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhCC
Q 017157          278 PRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQASKQWLRSQGAPKETRKSRIIHWLQYRG  357 (376)
Q Consensus       278 prkIrqeLrqKGId~eiIeeALee~~eeeeedEE~e~a~~Lak~~le~Ll~~AeKk~~R~~~~~~~k~rqKlir~L~RKG  357 (376)
                      +++|+++|++|||+.++|++||+++..    +| .           +.+...++|++.. ...++.+.++|+++||+|||
T Consensus        82 ~~~I~~eL~~KGI~~~~i~~al~~~~~----d~-~-----------~~a~~l~~kk~~~-~~~~~~~~~~K~~~~L~rrG  144 (159)
T 3c1d_A           82 PARIRQELNQKGISREATEKAMREADI----DW-A-----------ALARDQATRKYGE-PLPTVFSEKVKIQRFLLYRG  144 (159)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHCC----CH-H-----------HHHHHHHHHHHCS-SCCCSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHcCH----hH-H-----------HHHHHHHHHHcCC-CCCCCHHHHHHHHHHHHHCC
Confidence            999999999999999999999998743    23 1           2345566777643 22356788999999999999


Q ss_pred             CCHHHHHHHHHhhh
Q 017157          358 FNWCVTSFILKKLE  371 (376)
Q Consensus       358 Fs~d~I~~vL~eie  371 (376)
                      |++++|..++++++
T Consensus       145 F~~~~i~~~l~~~~  158 (159)
T 3c1d_A          145 YLMEDIQDIWRNFA  158 (159)
T ss_dssp             CCHHHHTTCC----
T ss_pred             CCHHHHHHHHHhcc
Confidence            99999999998764

>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}

Probab=98.10  E-value=1.2e-05  Score=72.27  Aligned_cols=91  Identities=13%  Similarity=0.092  Sum_probs=66.2

Q ss_pred             HHHHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHhhhhc-CC----ccHHHHHHHHHh
Q 017157          213 ENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSS-AS----WGPRRIKQALFK  287 (376)
Q Consensus       213 ~~~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD~ryAesyvrsr~~~-kg----~GprkIrqeLrq  287 (376)
                      ..++-..+....+|+..|++.|.+||+++++|+.+|+.+.+.   |...-|...++.++.. +.    .-.+++.+.|.+
T Consensus        72 ~~~vr~~~~~~~~G~~~I~~eL~~KGI~~~~I~~al~~~~~~---de~e~a~~l~~Kk~~~~~~~~~~~~~~K~~~~L~r  148 (177)
T 3e3v_A           72 ESYVRTMMNTSDKGPKVIKLNLSKKGIDDNIAEDALILYTDK---LQVEKGVTLAEKLANRYSHDSYRNKQNKIKQSLLT  148 (177)
T ss_dssp             HHHHHHHHHHCCCCHHHHHHHHHTTTCCHHHHHHHHTTSCHH---HHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcccccHHHHHHHHHHcCCCHHHHHHHHHhCCch---hHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHH
Confidence            334444445557999999999999999999999999765221   2234566666665542 11    125688999999


Q ss_pred             CCCCHHHHHHHHHhhhcCC
Q 017157          288 KGISQTDAKKAVNLVFRDG  306 (376)
Q Consensus       288 KGId~eiIeeALee~~eee  306 (376)
                      |||+.++|..||.++..+.
T Consensus       149 rGF~~~~I~~vl~~l~~~~  167 (177)
T 3e3v_A          149 KGFSYDIIDTIIQELDLIF  167 (177)
T ss_dssp             TTCCHHHHHHHHHHHHHC-
T ss_pred             CCCCHHHHHHHHHHCcCCC
Confidence            9999999999999986544

>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}

Probab=98.02  E-value=9.1e-06  Score=75.32  Aligned_cols=90  Identities=16%  Similarity=0.178  Sum_probs=64.6

Q ss_pred             HHHHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHhhhhc-CCc----cHHHHHHHHHh
Q 017157          213 ENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSS-ASW----GPRRIKQALFK  287 (376)
Q Consensus       213 ~~~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD~ryAesyvrsr~~~-kg~----GprkIrqeLrq  287 (376)
                      ..++-..+..+.+|+..|++.|.+||+++++|+.+|+.+.+.   +...-|...++.++.. .+.    -.+++.+.|.+
T Consensus       115 ~~~v~~~~~~~~~G~~~I~~eL~~KGI~~~~I~~al~~~~~~---~e~e~a~~l~~Kk~~~~~~~~~~~~k~K~~~~L~r  191 (221)
T 3d5l_A          115 ASYVRTMINTDLKGPGIIRQHLRQKGIGESDIDDALTQFTPE---VQAELAKKLALKLFRRYRNQPERRREQKVQQGLTT  191 (221)
T ss_dssp             HHHHHHHHHHCCCCHHHHHHHHHHTTCCHHHHHHHGGGCCHH---HHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHcCCCHHHHHHHHHhCCHH---HHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHh
Confidence            344444555578999999999999999999999999876221   2234455666666542 122    26799999999


Q ss_pred             CCCCHHHHHHHHHhhhcC
Q 017157          288 KGISQTDAKKAVNLVFRD  305 (376)
Q Consensus       288 KGId~eiIeeALee~~ee  305 (376)
                      ||++.++|..++.++..+
T Consensus       192 rGFs~~~I~~vl~~~~~~  209 (221)
T 3d5l_A          192 KGFSSSVYEMIKDEVVPQ  209 (221)
T ss_dssp             TTCCHHHHHHHTTC----
T ss_pred             CCCCHHHHHHHHHhccch
Confidence            999999999999887543

>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}

Probab=97.99  E-value=1.7e-05  Score=69.78  Aligned_cols=83  Identities=12%  Similarity=0.179  Sum_probs=62.7

Q ss_pred             HHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHhhhhcCC----ccHHHHHHHHHhCCC
Q 017157          215 LAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS----WGPRRIKQALFKKGI  290 (376)
Q Consensus       215 ~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD~ryAesyvrsr~~~kg----~GprkIrqeLrqKGI  290 (376)
                      ++-..+. +-+|+..|+++|.+||+++++|+.+|+.+..    |...-|...++.++....    .-.+++.+.|..|||
T Consensus        71 ~v~~~~~-~g~G~~~I~~eL~~KGI~~~~i~~al~~~~~----d~~~~a~~l~~kk~~~~~~~~~~~~~K~~~~L~rrGF  145 (159)
T 3c1d_A           71 FIASRSR-KGYGPARIRQELNQKGISREATEKAMREADI----DWAALARDQATRKYGEPLPTVFSEKVKIQRFLLYRGY  145 (159)
T ss_dssp             HHHHHHH-TTCCHHHHHHHHHHTTCCHHHHHHHHHHHCC----CHHHHHHHHHHHHHCSSCCCSHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHh-CCccHHHHHHHHHHcCCCHHHHHHHHHHcCH----hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence            3333443 4599999999999999999999999998732    566677777777764211    136789999999999


Q ss_pred             CHHHHHHHHHhh
Q 017157          291 SQTDAKKAVNLV  302 (376)
Q Consensus       291 d~eiIeeALee~  302 (376)
                      +.++|..++.++
T Consensus       146 ~~~~i~~~l~~~  157 (159)
T 3c1d_A          146 LMEDIQDIWRNF  157 (159)
T ss_dssp             CHHHHTTCC---
T ss_pred             CHHHHHHHHHhc
Confidence            999999988765

>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}

Probab=97.90  E-value=2.9e-05  Score=68.70  Aligned_cols=75  Identities=16%  Similarity=0.272  Sum_probs=61.2

Q ss_pred             cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHhhhhcC-C---ccHHHHHHHHHhCCCCHHHHHHH
Q 017157          223 RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSA-S---WGPRRIKQALFKKGISQTDAKKA  298 (376)
Q Consensus       223 RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD~ryAesyvrsr~~~k-g---~GprkIrqeLrqKGId~eiIeeA  298 (376)
                      +.+|+..|++.|.+||++.++|+.+|+.+.    .|...-|...++.++... .   .-.+++.+.|.+|||+.++|..+
T Consensus        80 ~~~G~~~I~~eL~~KGI~~~~I~~al~~~~----~de~e~a~~l~~Kk~~~~~~~~~~~k~K~~~~L~rrGF~~~~I~~~  155 (162)
T 3dfg_A           80 SGYGPLHIRAELGTHGLDSDAVSAAMATFE----GDWTENALDLIRRRFGEDGPVDLAQRRKAADLLARRGFDGNSIRLA  155 (162)
T ss_dssp             TTCCHHHHHHHHHHTTCCHHHHHHHHTTCC----SCHHHHHHHHHHHHHCTTCCCSHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             ccccHHHHHHHHHHcCCCHHHHHHHHHhCc----HhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            579999999999999999999999999873    255667777777766421 1   23568889999999999999999


Q ss_pred             HHh
Q 017157          299 VNL  301 (376)
Q Consensus       299 Lee  301 (376)
                      |.+
T Consensus       156 l~~  158 (162)
T 3dfg_A          156 TRF  158 (162)
T ss_dssp             TTC
T ss_pred             Hhc
Confidence            875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	376
d1okra_	120	Methicillin resistance regulatory protein MecI {St	88.87

>d1okra_ a.4.5.39 (A:) Methicillin resistance regulatory protein MecI {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Penicillinase repressor
domain: Methicillin resistance regulatory protein MecI
species: Staphylococcus aureus [TaxId: 1280]

Probab=88.87  E-value=1.6  Score=33.70  Aligned_cols=78  Identities=17%  Similarity=0.192  Sum_probs=53.6

Q ss_pred             cccCHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCCcc---------------HHHHHHHHHHhhhhc--CCccHHHHHHH
Q 017157          223 RAFTAVEMRKKLN-GKKFPSHVIEAVITDFQSRGLIN---------------DSLYAESYSRSRWSS--ASWGPRRIKQA  284 (376)
Q Consensus       223 RdrS~~ELr~KL~-~KG~sediIe~VLe~L~e~GyLD---------------D~ryAesyvrsr~~~--kg~GprkIrqe  284 (376)
                      -.-|..||.+.|. .++++...|-.+|.+|.+.|||.               ...|....+.+....  .+.....+..-
T Consensus        20 ~~~t~~ei~~~l~~~~~~~~sTv~t~L~rL~~Kg~l~r~~~gr~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (120)
T d1okra_          20 KYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYKTSKNFINKVYKGGFNSLVLNF   99 (120)
T ss_dssp             SSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESSCHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHHhcccCccHHhHHHHHHHHHHCCCeEEEecCCceEEeecCCHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            4678899999996 46899999999999999999993               456655555554432  33344445554


Q ss_pred             HHhCCCCHHHHHHHHH
Q 017157          285 LFKKGISQTDAKKAVN  300 (376)
Q Consensus       285 LrqKGId~eiIeeALe  300 (376)
                      +...+++.+.+++..+
T Consensus       100 ~~~~~ls~~el~~L~~  115 (120)
T d1okra_         100 VEKEDLSQDEIEELRN  115 (120)
T ss_dssp             HHHSCCCHHHHHHHHH
T ss_pred             HHccCCCHHHHHHHHH
Confidence            5556677666665433