Citrus Sinensis ID: 017162

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370------
MVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSFYT
cHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHccccEEEccccccccccccccEEEHHHHHHHHHHHHHHHHHHHHHHEEcccccccccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
cHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHcHEEHEHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHEHHHHHHHHEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
MVLVISWVTTLNTMWQMINlhecvpgvrfdryidlgrhafgpklgpwivlpqqLIVQVGCDIVYMVTGGKCLKKFVEMacshckplrQTFWILIFGSLHFFlsqlpdinsvsSVSLAAAVMSLSYSTIAWagslshgrienvsyaykhtssaDYMFRVFNALGQISFAFAGHAVALEIQatipstpekpskiLMWKGALGAYFVNAICYFPVALIGYwafgqdvddnVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMmikrmnfppgaAVRVVARSAYVAFTLFVGvtfpffgdllgffggfgftptsyflpsimwlvikkpkrfspkwiINWASIFIGVFIMLASTIGGfrnivadastysfyt
MVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSFYT
MVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINsvssvslaaavmslsysTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGaavrvvarsayvaFTLFVGVtfpffgdllgffggfgftptSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSFYT
*VLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPST**KPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSF**
MVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSFYT
MVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSFYT
MVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSFYT
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MVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSFYT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query376 2.2.26 [Sep-21-2011]
Q9C6M2440 Lysine histidine transpor yes no 0.994 0.85 0.770 1e-164
Q9FKS8446 Lysine histidine transpor no no 0.997 0.840 0.613 1e-137
Q9C733453 Lysine histidine transpor no no 0.997 0.827 0.586 1e-127
Q9LRB5441 Lysine histidine transpor no no 0.997 0.850 0.589 1e-125
Q9SR44441 Lysine histidine transpor no no 0.997 0.850 0.594 1e-122
O22719451 Lysine histidine transpor no no 0.973 0.811 0.527 1e-109
Q9C9J0448 Lysine histidine transpor no no 0.994 0.834 0.549 1e-105
Q9SS86455 Lysine histidine transpor no no 0.973 0.804 0.514 1e-103
Q9SX98519 Lysine histidine transpor no no 0.994 0.720 0.357 2e-62
Q84WE9478 Lysine histidine transpor no no 0.893 0.702 0.319 1e-41
>sp|Q9C6M2|LHTL6_ARATH Lysine histidine transporter-like 6 OS=Arabidopsis thaliana GN=At1g25530 PE=2 SV=1 Back     alignment and function desciption
 Score =  577 bits (1487), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 288/374 (77%), Positives = 327/374 (87%)

Query: 2   VLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCD 61
           VL ++W  TLNTMWQM+ LHECVPG RFDRYIDLGR+AFGPKLGPWIVLPQQLIVQVGC+
Sbjct: 66  VLAMTWGLTLNTMWQMVQLHECVPGTRFDRYIDLGRYAFGPKLGPWIVLPQQLIVQVGCN 125

Query: 62  IVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVM 121
           IVYMVTGGKCLK+FVE+ CS C P+RQ++WIL FG +HF LSQLP+ NSV+ VSLAAAVM
Sbjct: 126 IVYMVTGGKCLKQFVEITCSTCTPVRQSYWILGFGGVHFILSQLPNFNSVAGVSLAAAVM 185

Query: 122 SLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQAT 181
           SL YSTIAW GS++HGR+ +VSY YK T+  D+ FRVFNALGQISFAFAGHAVALEIQAT
Sbjct: 186 SLCYSTIAWGGSIAHGRVPDVSYDYKATNPGDFTFRVFNALGQISFAFAGHAVALEIQAT 245

Query: 182 IPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAA 241
           +PSTPE+PSK+ MW+G +GAY VNA+CYFPVALI YWAFGQDVDDNVLM L+RP WLIAA
Sbjct: 246 MPSTPERPSKVPMWQGVIGAYVVNAVCYFPVALICYWAFGQDVDDNVLMNLQRPAWLIAA 305

Query: 242 ANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFP 301
           ANLMVVVHVIGSYQVFAMPVF LLE MM+ +  F  G  +R   R+ YVAFTLF+GV+FP
Sbjct: 306 ANLMVVVHVIGSYQVFAMPVFDLLERMMVNKFGFKHGVVLRFFTRTIYVAFTLFIGVSFP 365

Query: 302 FFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGG 361
           FFGDLLGFFGGFGF PTS+FLPSIMWL+IKKP+RFS  W +NW SI +GVFIMLASTIGG
Sbjct: 366 FFGDLLGFFGGFGFAPTSFFLPSIMWLIIKKPRRFSVTWFVNWISIIVGVFIMLASTIGG 425

Query: 362 FRNIVADASTYSFY 375
            RNI+AD+STYSFY
Sbjct: 426 LRNIIADSSTYSFY 439
Amino acid transporter.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1 Back     alignment and function description
>sp|Q9C733|LHTL1_ARATH Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2 Back     alignment and function description
>sp|Q9LRB5|LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1 Back     alignment and function description
>sp|Q9SR44|LHTL2_ARATH Lysine histidine transporter-like 2 OS=Arabidopsis thaliana GN=At1g67640 PE=2 SV=1 Back     alignment and function description
>sp|O22719|LHTL3_ARATH Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2 Back     alignment and function description
>sp|Q9C9J0|LHTL5_ARATH Lysine histidine transporter-like 5 OS=Arabidopsis thaliana GN=At1g71680 PE=2 SV=2 Back     alignment and function description
>sp|Q9SS86|LHTL4_ARATH Lysine histidine transporter-like 4 OS=Arabidopsis thaliana GN=At3g01760 PE=3 SV=2 Back     alignment and function description
>sp|Q9SX98|LHTL8_ARATH Lysine histidine transporter-like 8 OS=Arabidopsis thaliana GN=AATL1 PE=1 SV=1 Back     alignment and function description
>sp|Q84WE9|LHTL7_ARATH Lysine histidine transporter-like 7 OS=Arabidopsis thaliana GN=At4g35180 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query376
224111726423 lysine/histidine transporter [Populus tr 1.0 0.888 0.845 0.0
224099345435 lysine/histidine transporter [Populus tr 0.997 0.862 0.845 1e-179
147858122420 hypothetical protein VITISV_012213 [Viti 1.0 0.895 0.829 1e-176
225423911438 PREDICTED: lysine histidine transporter- 1.0 0.858 0.829 1e-176
356535563419 PREDICTED: lysine histidine transporter- 1.0 0.897 0.821 1e-175
356495960437 PREDICTED: lysine histidine transporter- 1.0 0.860 0.803 1e-173
449434650437 PREDICTED: lysine histidine transporter- 1.0 0.860 0.813 1e-173
357488425439 Lysine/histidine transporter [Medicago t 1.0 0.856 0.795 1e-172
388513405439 unknown [Lotus japonicus] 1.0 0.856 0.800 1e-170
357443021460 Lysine/histidine transporter [Medicago t 1.0 0.817 0.736 1e-165
>gi|224111726|ref|XP_002315954.1| lysine/histidine transporter [Populus trichocarpa] gi|222864994|gb|EEF02125.1| lysine/histidine transporter [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  639 bits (1649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/376 (84%), Positives = 347/376 (92%)

Query: 1   MVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGC 60
           MVL +SW  TLNTMWQMI LHECVPG RFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGC
Sbjct: 48  MVLALSWCMTLNTMWQMIQLHECVPGTRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGC 107

Query: 61  DIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAV 120
           DIVYMVTGGKCLKKF+EM C+ C P+RQ++WILIFG +HFFLSQLP+ NSV+ VSLAAAV
Sbjct: 108 DIVYMVTGGKCLKKFMEMTCASCTPIRQSYWILIFGGIHFFLSQLPNFNSVAGVSLAAAV 167

Query: 121 MSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQA 180
           MSLSYSTIAWAGSL+HG+I+NVSYAYK TS+ADYMFRVFNALG+ISFAFAGHAV LEIQA
Sbjct: 168 MSLSYSTIAWAGSLAHGQIDNVSYAYKSTSAADYMFRVFNALGEISFAFAGHAVVLEIQA 227

Query: 181 TIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIA 240
           TIPSTPEKPSKI MWKGALGAYF+NAICYFPVA+IGYWAFGQDVDDNVL  LKRP WLIA
Sbjct: 228 TIPSTPEKPSKIPMWKGALGAYFINAICYFPVAIIGYWAFGQDVDDNVLTDLKRPAWLIA 287

Query: 241 AANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTF 300
           +ANLMVVVHVIGSYQV+AMPVF +LE MM+KR+NFPPG A+R++ RS YVAFTLFVGVTF
Sbjct: 288 SANLMVVVHVIGSYQVYAMPVFDMLERMMMKRLNFPPGIALRLLTRSTYVAFTLFVGVTF 347

Query: 301 PFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIG 360
           PFFGDLLGFFGGFGF PTSYFLP +MWL+IKKPKRFS KW INWA IF+GVFIM+ASTIG
Sbjct: 348 PFFGDLLGFFGGFGFAPTSYFLPCVMWLLIKKPKRFSTKWFINWACIFVGVFIMIASTIG 407

Query: 361 GFRNIVADASTYSFYT 376
           GFRNIV D+STY FYT
Sbjct: 408 GFRNIVTDSSTYRFYT 423

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224099345|ref|XP_002311447.1| lysine/histidine transporter [Populus trichocarpa] gi|222851267|gb|EEE88814.1| lysine/histidine transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147858122|emb|CAN79675.1| hypothetical protein VITISV_012213 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225423911|ref|XP_002281867.1| PREDICTED: lysine histidine transporter-like 6 [Vitis vinifera] gi|297737853|emb|CBI27054.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356535563|ref|XP_003536314.1| PREDICTED: lysine histidine transporter-like 6-like [Glycine max] Back     alignment and taxonomy information
>gi|356495960|ref|XP_003516838.1| PREDICTED: lysine histidine transporter-like 6-like [Glycine max] Back     alignment and taxonomy information
>gi|449434650|ref|XP_004135109.1| PREDICTED: lysine histidine transporter-like 6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357488425|ref|XP_003614500.1| Lysine/histidine transporter [Medicago truncatula] gi|355515835|gb|AES97458.1| Lysine/histidine transporter [Medicago truncatula] Back     alignment and taxonomy information
>gi|388513405|gb|AFK44764.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|357443021|ref|XP_003591788.1| Lysine/histidine transporter [Medicago truncatula] gi|355480836|gb|AES62039.1| Lysine/histidine transporter [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query376
TAIR|locus:2031215440 AT1G25530 [Arabidopsis thalian 0.994 0.85 0.671 9.2e-139
UNIPROTKB|Q85V22441 ht "Histidine amino acid trans 0.997 0.850 0.522 2.9e-110
TAIR|locus:2154815446 LHT1 "lysine histidine transpo 0.997 0.840 0.517 2.5e-106
TAIR|locus:2024071441 LHT2 "lysine histidine transpo 0.997 0.850 0.498 4.1e-104
TAIR|locus:2008605441 AT1G67640 "AT1G67640" [Arabido 0.997 0.850 0.501 5.3e-104
TAIR|locus:2008154453 AT1G48640 [Arabidopsis thalian 0.997 0.827 0.498 7.1e-100
TAIR|locus:2013056448 AT1G71680 [Arabidopsis thalian 1.0 0.839 0.464 6.5e-90
TAIR|locus:2008435451 AT1G61270 [Arabidopsis thalian 0.973 0.811 0.448 4.3e-86
TAIR|locus:2015383519 AT1G47670 [Arabidopsis thalian 0.989 0.716 0.328 4.8e-55
TAIR|locus:2132816478 LHT7 "LYS/HIS transporter 7" [ 0.896 0.705 0.272 1.5e-33
TAIR|locus:2031215 AT1G25530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1358 (483.1 bits), Expect = 9.2e-139, P = 9.2e-139
 Identities = 251/374 (67%), Positives = 286/374 (76%)

Query:     2 VLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCD 61
             VL ++W  TLNTMWQM+ LHECVPG RFDRYIDLGR+AFGPKLGPWIVLPQQLIVQVGC+
Sbjct:    66 VLAMTWGLTLNTMWQMVQLHECVPGTRFDRYIDLGRYAFGPKLGPWIVLPQQLIVQVGCN 125

Query:    62 IVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINXXXXXXXXXXXX 121
             IVYMVTGGKCLK+FVE+ CS C P+RQ++WIL FG +HF LSQLP+ N            
Sbjct:   126 IVYMVTGGKCLKQFVEITCSTCTPVRQSYWILGFGGVHFILSQLPNFNSVAGVSLAAAVM 185

Query:   122 XXXXXTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQAT 181
                  TIAW GS++HGR+ +VSY YK T+  D+ FRVFNALGQISFAFAGHAVALEIQAT
Sbjct:   186 SLCYSTIAWGGSIAHGRVPDVSYDYKATNPGDFTFRVFNALGQISFAFAGHAVALEIQAT 245

Query:   182 IPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAA 241
             +PSTPE+PSK+ MW+G +GAY VNA+CYFPVALI YWAFGQDVDDNVLM L+RP WLIAA
Sbjct:   246 MPSTPERPSKVPMWQGVIGAYVVNAVCYFPVALICYWAFGQDVDDNVLMNLQRPAWLIAA 305

Query:   242 ANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGXXXXXXXXXXXXXFTLFVGVXXX 301
             ANLMVVVHVIGSYQVFAMPVF LLE MM+ +  F  G             FTLF+GV   
Sbjct:   306 ANLMVVVHVIGSYQVFAMPVFDLLERMMVNKFGFKHGVVLRFFTRTIYVAFTLFIGVSFP 365

Query:   302 XXXXXXXXXXXXXXXXXSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGG 361
                              S+FLPSIMWL+IKKP+RFS  W +NW SI +GVFIMLASTIGG
Sbjct:   366 FFGDLLGFFGGFGFAPTSFFLPSIMWLIIKKPRRFSVTWFVNWISIIVGVFIMLASTIGG 425

Query:   362 FRNIVADASTYSFY 375
              RNI+AD+STYSFY
Sbjct:   426 LRNIIADSSTYSFY 439
GO:0005886 "plasma membrane" evidence=ISM
GO:0006865 "amino acid transport" evidence=ISS
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=ISS
UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
TAIR|locus:2154815 LHT1 "lysine histidine transporter 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024071 LHT2 "lysine histidine transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008605 AT1G67640 "AT1G67640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008154 AT1G48640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013056 AT1G71680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008435 AT1G61270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015383 AT1G47670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132816 LHT7 "LYS/HIS transporter 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9C6M2LHTL6_ARATHNo assigned EC number0.77000.99460.85yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query376
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 6e-74
PLN03074473 PLN03074, PLN03074, auxin influx permease; Provisi 5e-16
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 8e-08
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  234 bits (600), Expect = 6e-74
 Identities = 119/374 (31%), Positives = 185/374 (49%), Gaps = 18/374 (4%)

Query: 2   VLVISWVTTLNTMWQMINLHECVPGV---RFDRYIDLGRHAFGPKLGPWIVLPQQLIVQV 58
           +LVI  + +L T+  ++   + V  V   R   Y DLG   FGPK G  ++L   L+   
Sbjct: 39  LLVIVGLISLYTLHLLVQCSKYVDKVKGKRRKSYGDLGYRLFGPK-GKLLILFAILVNLF 97

Query: 59  GCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAA 118
           G  I Y++  G  L    +     C  +   ++I+IFG +   LS +P+++++S +SL A
Sbjct: 98  GVCISYLIFAGDNLPAIFDSFFDTC-HISLVYFIIIFGLIFIPLSFIPNLSALSILSLVA 156

Query: 119 AVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEI 178
           AV SL Y  I        G +           +   + R+F A+G I FAF GHAV L I
Sbjct: 157 AVSSL-YIVILVLSVAELGVLTAQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPI 215

Query: 179 QATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWL 238
           Q T+ S P K     M K  L A  +  + Y  V L+GY AFG +V  N+L+ L +  WL
Sbjct: 216 QNTMKS-PSKFKA--MTKVLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILLNLPKSDWL 272

Query: 239 IAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKR----MNFPPGAAVRVVARSAYVAFTL 294
           I  ANL++V+H++ SY + A P+  ++E ++ ++     + P    +RVV RS  V  T 
Sbjct: 273 IDIANLLLVLHLLLSYPLQAFPIRQIVENLLFRKGASGKHNPKSKLLRVVIRSGLVVITY 332

Query: 295 FVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKW-----IINWASIFI 349
            + ++ PF GD L   G     P ++ LP +  L +KK K+ S +      I++   I I
Sbjct: 333 LIAISVPFLGDFLSLVGATSGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVI 392

Query: 350 GVFIMLASTIGGFR 363
           G+ +M     G   
Sbjct: 393 GLLLMAYGVAGLII 406

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|215559 PLN03074, PLN03074, auxin influx permease; Provisional Back     alignment and domain information
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 376
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
PTZ00206467 amino acid transporter; Provisional 100.0
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
PLN03074473 auxin influx permease; Provisional 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 99.95
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.83
PRK10483414 tryptophan permease; Provisional 99.82
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.81
PRK09664415 tryptophan permease TnaB; Provisional 99.81
PRK15132403 tyrosine transporter TyrP; Provisional 99.8
PRK13629443 threonine/serine transporter TdcC; Provisional 99.64
TIGR00814397 stp serine transporter. The HAAAP family includes 99.47
PRK11021410 putative transporter; Provisional 98.75
PRK10655438 potE putrescine transporter; Provisional 98.73
TIGR00909429 2A0306 amino acid transporter. 98.72
PRK10746461 putative transport protein YifK; Provisional 98.7
PRK10644445 arginine:agmatin antiporter; Provisional 98.67
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 98.6
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 98.6
PRK11357445 frlA putative fructoselysine transporter; Provisio 98.59
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 98.56
TIGR00908442 2A0305 ethanolamine permease. The three genes used 98.55
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 98.54
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 98.5
PRK10197446 gamma-aminobutyrate transporter; Provisional 98.45
TIGR00906 557 2A0303 cationic amino acid transport permease. 98.44
PRK10238456 aromatic amino acid transporter; Provisional 98.44
PRK10249458 phenylalanine transporter; Provisional 98.44
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 98.42
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 98.41
TIGR00913478 2A0310 amino acid permease (yeast). 98.39
KOG1287479 consensus Amino acid transporters [Amino acid tran 98.38
TIGR00907482 2A0304 amino acid permease (GABA permease). 98.37
PRK11387471 S-methylmethionine transporter; Provisional 98.37
TIGR00911501 2A0308 L-type amino acid transporter. 98.36
TIGR00930 953 2a30 K-Cl cotransporter. 98.35
TIGR00912359 2A0309 spore germination protein (amino acid perme 98.33
PRK10580457 proY putative proline-specific permease; Provision 98.28
COG0531466 PotE Amino acid transporters [Amino acid transport 98.24
PRK10836489 lysine transporter; Provisional 98.23
PRK15049499 L-asparagine permease; Provisional 98.22
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 98.19
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 98.17
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 98.05
COG3949349 Uncharacterized membrane protein [Function unknown 97.94
PRK15238496 inner membrane transporter YjeM; Provisional 97.79
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 97.77
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 97.75
PF03845320 Spore_permease: Spore germination protein; InterPr 97.71
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 97.46
COG0833541 LysP Amino acid transporters [Amino acid transport 97.33
COG1457442 CodB Purine-cytosine permease and related proteins 97.28
KOG1289550 consensus Amino acid transporters [Amino acid tran 97.25
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 96.91
PRK11375484 allantoin permease; Provisional 96.85
TIGR00813407 sss transporter, SSS family. have different number 96.83
PRK09442483 panF sodium/panthothenate symporter; Provisional 96.83
KOG1286554 consensus Amino acid transporters [Amino acid tran 96.7
PRK12488549 acetate permease; Provisional 96.65
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 96.47
COG0591493 PutP Na+/proline symporter [Amino acid transport a 96.03
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 95.8
PRK11017404 codB cytosine permease; Provisional 95.39
PRK15419502 proline:sodium symporter PutP; Provisional 94.87
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 94.68
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 94.67
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 94.53
PRK09395551 actP acetate permease; Provisional 94.49
PF01566358 Nramp: Natural resistance-associated macrophage pr 94.07
PRK10484523 putative transporter; Provisional 93.76
COG4147529 DhlC Predicted symporter [General function predict 93.6
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 93.14
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 92.01
PRK00701439 manganese transport protein MntH; Reviewed 91.63
KOG3832319 consensus Predicted amino acid transporter [Genera 91.44
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 88.31
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 87.18
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 86.85
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 85.07
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 83.43
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 82.73
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 82.51
COG0733439 Na+-dependent transporters of the SNF family [Gene 80.46
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=8.8e-51  Score=378.21  Aligned_cols=349  Identities=20%  Similarity=0.242  Sum_probs=302.8

Q ss_pred             hhhHHHHHHHHHHHHHhCcccC---CCcccccHHHHHHHHh----------CCCCcCeeehhhHHHHHHhhhhhHhhhch
Q 017162            3 LVISWVTTLNTMWQMINLHECV---PGVRFDRYIDLGRHAF----------GPKLGPWIVLPQQLIVQVGCDIVYMVTGG   69 (376)
Q Consensus         3 l~~~~~~~~~t~~ll~~~~~~~---~~~~~~sy~~l~~~~~----------G~~~g~~~~~~~~~~~~~g~~~~y~i~~~   69 (376)
                      .++++.++.||+|++++|.+..   .+...-+|++.++.++          || ++|.+++++++++|+|.|++|+++++
T Consensus        84 ~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a~~~~~~~~r~~g~-~~r~~V~~~L~i~QlGfc~vY~VFva  162 (449)
T KOG1304|consen   84 TVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESAMEGGPGWLRKYGP-AARFVVNFFLVITQLGFCCVYLVFVA  162 (449)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHHHcCCcHHHHhhcH-HHHHHHHHHHHHHHhchhhEEeeeHH
Confidence            4678999999999999997532   1222468888887775          54 67899999999999999999999999


Q ss_pred             hhHHHHHHHhccCCCCcchhHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCC
Q 017162           70 KCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHT  149 (376)
Q Consensus        70 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  149 (376)
                      ++++++.+...  ...++.+.++.+...+.+|++++|+++.|+.+|.++.+..++..+++......+. ++     .++.
T Consensus       163 ~nl~~i~~~~~--~~~~s~~~~i~~~~~~~lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~-~~-----~~~~  234 (449)
T KOG1304|consen  163 TNLKQIVDEHS--PGVLSVRLYILIQLPPLLLLNLIRNLKILSPFSLFANVFILVGLAIIMYYLVQDL-PP-----TSDL  234 (449)
T ss_pred             hhHHHHHhccC--CCCccHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhcc-CC-----cccc
Confidence            99999998432  2367889999999999999999999999999999999988776666554433332 21     1112


Q ss_pred             CcchhHHHHHhHhhHHHHhcccceeeccccccCCcCCCCCcccch-hhhhhhHHHHHHHHHhhhcceeecccCCCCchhh
Q 017162          150 SSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILM-WKGALGAYFVNAICYFPVALIGYWAFGQDVDDNV  228 (376)
Q Consensus       150 ~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~-~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~i  228 (376)
                      +...++.+++..+|+.+|||+++.++.|++++|    |+|+++.- .+++..++.++.++|..+|++||++||+++++.|
T Consensus       235 ~~~~~~~~~~lf~GtaifafEGig~VLPlEn~M----k~P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sI  310 (449)
T KOG1304|consen  235 PAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSM----KKPQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSI  310 (449)
T ss_pred             ccccchhhhHHHHHHHHHHhccceEEEehhhcc----cChhhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceE
Confidence            334457899999999999999999999999996    99997642 3888899999999999999999999999999999


Q ss_pred             hcccCCchHHHHHHHHHHHHHHHHhhceeccchHHHHHHHHhhhcCCCCCchhhhhhHHHHHHHHHHHHHhcccchhhhh
Q 017162          229 LMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLG  308 (376)
Q Consensus       229 l~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vp~~~~v~~  308 (376)
                      +.|+|+ +++.+.+++++++.++.|||+|++|..|++|+.+.++.+.++.++..+..|..+++++..+|..+||++++++
T Consensus       311 TLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fis  389 (449)
T KOG1304|consen  311 TLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSENRKKLLEYALRVFLVLLTFLIAVAVPNLALFIS  389 (449)
T ss_pred             EecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHH
Confidence            999999 8999999999999999999999999999999998777665556778899999999999999999999999999


Q ss_pred             hhhcccchhhHHhhhHHHHHHHhCCCC---CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017162          309 FFGGFGFTPTSYFLPSIMWLVIKKPKR---FSPKWIINWASIFIGVFIMLASTIGGFRNI  365 (376)
Q Consensus       309 l~Ga~~~~~l~~ilP~l~~l~~~~~~~---~~~~~~~~~~~i~~g~~~~v~gt~~si~~l  365 (376)
                      ++||++++.+++++|+++|++.++++.   .+|+++.|.+++++|++.++.|||+|++++
T Consensus       390 LVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i  449 (449)
T KOG1304|consen  390 LVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI  449 (449)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence            999999999999999999999987654   468889999999999999999999999864

>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query376
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.08
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 98.91
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 98.69
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 97.23
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 95.35
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 93.74
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 81.15
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.08  E-value=2e-09  Score=103.76  Aligned_cols=315  Identities=15%  Similarity=0.104  Sum_probs=157.5

Q ss_pred             hhHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCC
Q 017162            4 VISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHC   83 (376)
Q Consensus         4 ~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~   83 (376)
                      ++.++..........|...+.|+..  ..-+..++.+||.+| .+......+.......++....++.++...+...   
T Consensus        47 li~~~~~~~~a~~~~el~~~~p~~G--g~y~~~~~~~G~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  120 (445)
T 3l1l_A           47 LVTIIGALGLSMVYAKMSFLDPSPG--GSYAYARRCFGPFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK---  120 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCTT--THHHHHHHHSCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG---
T ss_pred             HHHHHHHHHHHHHHHHHHccCCCCC--CchhhHHhHcCChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc---
Confidence            4455666666666777666666543  667778999998654 4555655555555555555555555543322110   


Q ss_pred             CCcchhHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCcchhHHHHHhHhh
Q 017162           84 KPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALG  163 (376)
Q Consensus        84 ~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (376)
                      .++....+. +......-....+..+....++.......+...++..+.......++....... .....++.++..++.
T Consensus       121 ~~~~~~~~~-~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  198 (445)
T 3l1l_A          121 DPWVLTITC-VVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWN-VSGLGTFGAIQSTLN  198 (445)
T ss_dssp             SHHHHHHHH-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC------------HHHHHH
T ss_pred             ccHHHHHHH-HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhcccccC-ccCCccHHHHHHHHH
Confidence            011111111 111122222233456666666655544433322222222222211111100110 011223567889999


Q ss_pred             HHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcceeecccCCCCc----hhhhcccC--CchH
Q 017162          164 QISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVD----DNVLMALK--RPGW  237 (376)
Q Consensus       164 ~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~----~~il~~~~--~~~~  237 (376)
                      ...|+|.+.........|+    |||+| +.+|++..+...+.++|....+......+.+..    ++..+-.+  ...+
T Consensus       199 ~~~~af~G~e~~~~~~~e~----k~p~r-~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~  273 (445)
T 3l1l_A          199 VTLWSFIGVESASVAAGVV----KNPKR-NVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDT  273 (445)
T ss_dssp             HHHHTTTTTTHHHHGGGGB----SSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTT
T ss_pred             HHHHHHHhHHHHHHHHHHh----cCccc-cccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHH
Confidence            9999999999999999996    99965 678999999999999999877665554443321    11111111  0123


Q ss_pred             HHHHHHHHHHHHHHHhhceeccchHHHHHHHHhhhc-----C--CCCCchhhhhhHHHHHHHHHHHHHh--cc----cch
Q 017162          238 LIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM-----N--FPPGAAVRVVARSAYVAFTLFVGVT--FP----FFG  304 (376)
Q Consensus       238 ~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~lA~~--vp----~~~  304 (376)
                      ...+..+...+..+.+.--......+.+...-..+.     .  ++++...+-..-...  ++.++.+.  .|    .++
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~P~~a~~~~~~--~~~~~~~~~~~~~~~~~~~  351 (445)
T 3l1l_A          274 AGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGI--LMTIFQLSSISPNATKEFG  351 (445)
T ss_dssp             HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGGCCCTTCCCHHHHHHHHH--HHHHHHHSTTSHHHHCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHhcCCCCCCHHHHHHHHH--HHHHHHHHHHcccHHHHHH
Confidence            334444555555554443333333343333322110     0  011111221111111  12222222  23    245


Q ss_pred             hhhhhhhcccchhhHHhhhHHHHHHHhCCCC
Q 017162          305 DLLGFFGGFGFTPTSYFLPSIMWLVIKKPKR  335 (376)
Q Consensus       305 ~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~~~  335 (376)
                      .+.++.+  .+..+.|.++.+.+++.+++++
T Consensus       352 ~l~~~~~--~~~~~~y~~~~~~~~~~r~~~~  380 (445)
T 3l1l_A          352 LVSSVSV--IFTLVPYLYTCAALLLLGHGHF  380 (445)
T ss_dssp             HHHHHHH--HHHHHHHHHHHHHHHHHHSSSS
T ss_pred             HHHHHHH--HHHHHHHHHHHHHHHHHhhcCc
Confidence            5555543  3457889999999999987664
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00