Citrus Sinensis ID: 017176
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 376 | 2.2.26 [Sep-21-2011] | |||||||
| Q8Z1T1 | 332 | tRNA-dihydrouridine synth | N/A | no | 0.853 | 0.966 | 0.421 | 7e-65 | |
| Q8CWK7 | 326 | tRNA-dihydrouridine synth | yes | no | 0.845 | 0.975 | 0.402 | 8e-65 | |
| Q8ZKH4 | 332 | tRNA-dihydrouridine synth | yes | no | 0.853 | 0.966 | 0.418 | 2e-64 | |
| Q7UBC5 | 330 | tRNA-dihydrouridine synth | yes | no | 0.768 | 0.875 | 0.452 | 3e-64 | |
| Q87L85 | 326 | tRNA-dihydrouridine synth | yes | no | 0.845 | 0.975 | 0.402 | 3e-64 | |
| P32695 | 330 | tRNA-dihydrouridine synth | N/A | no | 0.768 | 0.875 | 0.452 | 3e-64 | |
| Q8X5V6 | 330 | tRNA-dihydrouridine synth | N/A | no | 0.768 | 0.875 | 0.452 | 3e-64 | |
| Q8FB30 | 331 | tRNA-dihydrouridine synth | yes | no | 0.768 | 0.873 | 0.448 | 5e-64 | |
| Q9KUX9 | 327 | tRNA-dihydrouridine synth | yes | no | 0.837 | 0.963 | 0.412 | 6e-64 | |
| Q8EAJ0 | 335 | tRNA-dihydrouridine synth | yes | no | 0.829 | 0.931 | 0.403 | 5e-63 |
| >sp|Q8Z1T1|DUSA_SALTI tRNA-dihydrouridine synthase A OS=Salmonella typhi GN=dusA PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 248 bits (632), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 140/332 (42%), Positives = 190/332 (57%), Gaps = 11/332 (3%)
Query: 7 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
LP + FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 10 LPAYRFSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGD---YLAYSEEEH 66
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 67 PVALQLGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADC 125
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP
Sbjct: 126 VKAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFINTVSGQGECEMFIIHARKAWLSGLSPK 185
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPL Y Y L RDFP LT ++NGGI +++E LR VMVGR AYQNP
Sbjct: 186 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRH-MDGVMVGREAYQNPG- 243
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
L VD I+GA ++ VV Y + L + ++ + + +L F PG
Sbjct: 244 ILAAVDREIFGADTTDTDPVAVVRAMYPYIEREL----SQGAYLGHITRHMLGLFQGIPG 299
Query: 306 NGLFKRKADAAFQTCKTVKSFLEETIVAIPDS 337
++R + LE+ + I D
Sbjct: 300 ARQWRRYLSENAHKAGADAAVLEQALKLIADK 331
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Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Salmonella typhi (taxid: 90370) EC: 1EC: .EC: -EC: .EC: -EC: .EC: - |
| >sp|Q8CWK7|DUSA_VIBVU tRNA-dihydrouridine synthase A OS=Vibrio vulnificus (strain CMCP6) GN=dusA PE=3 SV=2 | Back alignment and function description |
|---|
Score = 248 bits (632), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 132/328 (40%), Positives = 191/328 (58%), Gaps = 10/328 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R RL++K LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 7 LSVAPMLDWTDRHCRYFHRLMTKETLLYTEMITTGAIIHGKGD---FLAYNQEEHPVALQ 63
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA +LA YDE+NLN GCPS +V +G FG LM +P+ V + ++ +
Sbjct: 64 LGGSNPQDLATCAKLAAERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMK 122
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY L DF+ VS F IH+RKA L+G+SP ENR I
Sbjct: 123 EVVDIPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREI 182
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L +DF LT +NGG+ +++E L+ VM+GR AYQ+P Y L V
Sbjct: 183 PPLDYPRAYQLKKDFSHLTIAINGGVKSLEEAKEHLQH-LDGVMIGREAYQSP-YLLASV 240
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G+ S RRQ+VE+ Y + L N ++ + + +L F + PG ++
Sbjct: 241 DQELFGSQSPIKKRRQIVEEMYPYIEQQLA----NGAYLGHMTRHMLGLFQNMPGARQWR 296
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDSV 338
R + L++ + IP +
Sbjct: 297 RHISENAHKPGSGIEVLQQALAKIPQEL 324
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Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Vibrio vulnificus (taxid: 672) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q8ZKH4|DUSA_SALTY tRNA-dihydrouridine synthase A OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=dusA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 246 bits (629), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 139/332 (41%), Positives = 190/332 (57%), Gaps = 11/332 (3%)
Query: 7 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
LP + FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 10 LPAYRFSIAPMLDWTDRHCRYFLRLLSRQTQLYTEMVTTGAIIHGKGD---YLAYSEEEH 66
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 67 PVALQLGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADC 125
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP
Sbjct: 126 VKAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFIDTVSGQGECEMFIIHARKAWLSGLSPK 185
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPL Y Y L RDFP LT ++NGGI +++E LR VMVGR AYQNP
Sbjct: 186 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRH-MDGVMVGREAYQNPG- 243
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
L VD I+GA ++ VV Y + L + ++ + + +L F PG
Sbjct: 244 ILAAVDREIFGADTTDADPVAVVRAMYPYIEREL----SQGAYLGHITRHMLGLFQGIPG 299
Query: 306 NGLFKRKADAAFQTCKTVKSFLEETIVAIPDS 337
++R + LE+ + + D
Sbjct: 300 ARQWRRYLSENAHKAGADVAVLEQALKLVADK 331
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q7UBC5|DUSA_SHIFL tRNA-dihydrouridine synthase A OS=Shigella flexneri GN=dusA PE=3 SV=2 | Back alignment and function description |
|---|
Score = 246 bits (627), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 137/303 (45%), Positives = 184/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 189 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 246
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + +++ +L F PG
Sbjct: 247 DREIFGSSDTDADPVAVVRAMYPYIEHELSQGTY------LGHIIRHMLGLFQGIPGARQ 300
Query: 309 FKR 311
++R
Sbjct: 301 WRR 303
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Shigella flexneri (taxid: 623) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q87L85|DUSA_VIBPA tRNA-dihydrouridine synthase A OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=dusA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 246 bits (627), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 132/328 (40%), Positives = 192/328 (58%), Gaps = 10/328 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R RL++K LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 7 LSVAPMLDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGD---FLAYNEEEHPLALQ 63
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN ++LAK +LA YDEINLN GCPS +V +G FG LM +P+ V + ++ +
Sbjct: 64 LGGSNPEDLAKCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMK 122
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+VPV+VK RIG+DD DSY L DF+ VS F IH+RKA L+G+SP ENR I
Sbjct: 123 EVVDVPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREI 182
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L +DF LT +NGG+ +++E L+ VM+GR AYQ+P Y L V
Sbjct: 183 PPLDYPRAYQLKQDFSHLTIAINGGVKSLEEAKVHLQH-LDGVMIGREAYQSP-YLLASV 240
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G+ + R ++VE+ Y +A L ++ + + +L F + PG ++
Sbjct: 241 DQELFGSNAPVKKRSEIVEEMYPYIEAQLA----KGAYLGHITRHMLGLFQNMPGARQWR 296
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDSV 338
R + L++ + IP +
Sbjct: 297 RHISENAHKPGSGLEVLQDALAKIPKEL 324
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Vibrio parahaemolyticus (taxid: 670) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|P32695|DUSA_ECOLI tRNA-dihydrouridine synthase A OS=Escherichia coli (strain K12) GN=dusA PE=3 SV=3 | Back alignment and function description |
|---|
Score = 245 bits (626), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 137/303 (45%), Positives = 183/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 189 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 246
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 247 DREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 300
Query: 309 FKR 311
++R
Sbjct: 301 WRR 303
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Escherichia coli (strain K12) (taxid: 83333) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q8X5V6|DUSA_ECO57 tRNA-dihydrouridine synthase A OS=Escherichia coli O157:H7 GN=dusA PE=3 SV=2 | Back alignment and function description |
|---|
Score = 245 bits (626), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 137/303 (45%), Positives = 183/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 189 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 246
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 247 DREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 300
Query: 309 FKR 311
++R
Sbjct: 301 WRR 303
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Escherichia coli O157:H7 (taxid: 83334) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q8FB30|DUSA_ECOL6 tRNA-dihydrouridine synthase A OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=dusA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 245 bits (625), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 136/303 (44%), Positives = 183/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 14 FSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 71 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 130 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 190 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 248 DREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 301
Query: 309 FKR 311
++R
Sbjct: 302 WRR 304
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q9KUX9|DUSA_VIBCH tRNA-dihydrouridine synthase A OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=dusA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 244 bits (624), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 134/325 (41%), Positives = 184/325 (56%), Gaps = 10/325 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R RL+S LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 7 LSVAPMLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGD---FLAYNQEEHPVALQ 63
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
GGSN +LA +LA YDEINLN GCPS +V +G FG LM +P V E ++ +
Sbjct: 64 FGGSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMGEPDLVAECVAAMR 122
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A ++PV+VK RIG+DD DSY L FI V+ F IH+RKA L+G+SP ENR I
Sbjct: 123 AVVDIPVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREI 182
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y + RDFP LT +NGG+ +++E L+ VM+GR AYQNP Y L V
Sbjct: 183 PPLDYPRAYQIKRDFPHLTIAVNGGVKSLEEAKLHLQH-LDGVMIGREAYQNP-YLLAEV 240
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G + R QV+ + Y + L + H+ + + +L F + PG ++
Sbjct: 241 DQQIFGLETPVKKRSQVIHEMMPYIEREL----SQGTHLGHMTRHMLGLFQNMPGARQWR 296
Query: 311 RKADAAFQTCKTVKSFLEETIVAIP 335
R +E+ + IP
Sbjct: 297 RHISENAHKPGAGLEVVEQALAKIP 321
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (taxid: 243277) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q8EAJ0|DUSA_SHEON tRNA-dihydrouridine synthase A OS=Shewanella oneidensis (strain MR-1) GN=dusA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 241 bits (616), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 133/330 (40%), Positives = 192/330 (58%), Gaps = 18/330 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD HYR ARL+S +A LYTEM+ I++ +G+ +L ++ E+HP+ LQ
Sbjct: 16 FSIAPMLDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGD---YLTYNQEEHPLALQ 72
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN LA+ +LA YDE+NLN GCPS +V +G FG LM +P+ V E + +
Sbjct: 73 LGGSNPVELARCAKLAAERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPELVAECVDAMK 131
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY L FI V + FIIH+RKA L G+SP ENR I
Sbjct: 132 QVVDIPVTVKTRIGIDEQDSYEFLTHFIDTVMA-KGCGEFIIHARKAWLQGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ Y L RD+P L ++NGGI ++++ L+ VMVGR AYQNP Y L V
Sbjct: 191 PPLDYDRVYQLKRDYPALNISINGGITSLEQAQTHLQH-LDGVMVGREAYQNP-YMLAQV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D + G+ + ++R V+E Y +A L G + + + ++ F PG ++
Sbjct: 249 DQVLCGSTKAVMSREAVIEAMLPYIEAHLQVGG----RLNHITRHMIGLFQGLPGARAWR 304
Query: 311 R-------KADAAFQTCKTVKSFLEETIVA 333
R K A + K ++ +VA
Sbjct: 305 RYLSENAHKNGAGIEVVKLAYQSVQTDLVA 334
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Shewanella oneidensis (strain MR-1) (taxid: 211586) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 376 | ||||||
| 255553550 | 375 | tRNA-dihydrouridine synthase A, putative | 0.997 | 1.0 | 0.834 | 0.0 | |
| 225450085 | 433 | PREDICTED: tRNA-dihydrouridine synthase | 0.997 | 0.866 | 0.824 | 0.0 | |
| 297736275 | 423 | unnamed protein product [Vitis vinifera] | 0.997 | 0.886 | 0.824 | 0.0 | |
| 359487300 | 377 | PREDICTED: tRNA-dihydrouridine synthase | 0.997 | 0.994 | 0.824 | 0.0 | |
| 449516697 | 431 | PREDICTED: tRNA-dihydrouridine synthase | 0.989 | 0.863 | 0.820 | 0.0 | |
| 449463996 | 431 | PREDICTED: tRNA-dihydrouridine synthase | 0.989 | 0.863 | 0.820 | 0.0 | |
| 224055152 | 378 | predicted protein [Populus trichocarpa] | 0.992 | 0.986 | 0.824 | 0.0 | |
| 356525006 | 430 | PREDICTED: tRNA-dihydrouridine synthase | 0.986 | 0.862 | 0.798 | 1e-180 | |
| 224106093 | 380 | predicted protein [Populus trichocarpa] | 0.992 | 0.981 | 0.797 | 1e-180 | |
| 388507496 | 425 | unknown [Lotus japonicus] | 0.976 | 0.863 | 0.807 | 1e-179 |
| >gi|255553550|ref|XP_002517816.1| tRNA-dihydrouridine synthase A, putative [Ricinus communis] gi|223543088|gb|EEF44623.1| tRNA-dihydrouridine synthase A, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/375 (83%), Positives = 343/375 (91%)
Query: 1 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF 60
M +Y PP FSVAPMMDWTD+HYRTLARLISKH+WLYTEMLAAETI+YQQGNLDRFLAF
Sbjct: 1 MGVGRYHPPLFSVAPMMDWTDHHYRTLARLISKHSWLYTEMLAAETIVYQQGNLDRFLAF 60
Query: 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK 120
SP+QHPIVLQIGGSNLDNLAKATELA AY YDEIN NCGCPSP+VAGHGCFGV LMLDPK
Sbjct: 61 SPQQHPIVLQIGGSNLDNLAKATELATAYGYDEINFNCGCPSPRVAGHGCFGVRLMLDPK 120
Query: 121 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN 180
FVGEAMSVIAANT+VPVSVKCRIGVD+HDSYN+LCDFIYKVSSLSPT+HFIIHSRKALLN
Sbjct: 121 FVGEAMSVIAANTDVPVSVKCRIGVDNHDSYNELCDFIYKVSSLSPTKHFIIHSRKALLN 180
Query: 181 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240
GISPAENR IPPLKYEYY+ALLRDFPDL FT+NGGIN +DEVN ALR+GAH VMVGRAA+
Sbjct: 181 GISPAENRKIPPLKYEYYFALLRDFPDLRFTINGGINCIDEVNLALREGAHGVMVGRAAF 240
Query: 241 QNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFF 300
NPW LGHVD+AIYGAP SGLTRRQV+E+YQ Y DAILGTYGNNRP+VRDV+KPLL F
Sbjct: 241 NNPWTVLGHVDSAIYGAPESGLTRRQVLEQYQAYADAILGTYGNNRPNVRDVVKPLLGLF 300
Query: 301 HSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVHDL 360
+SEPGNGL+KR+ADAAFQ+C T+KSF EET+VAIPD+VLDSPI EAP GR+DLF +V L
Sbjct: 301 YSEPGNGLWKRRADAAFQSCTTIKSFFEETLVAIPDTVLDSPIAEAPSGRQDLFTNVRGL 360
Query: 361 LPPPYKAREQEVLYA 375
LPPPY REQ+V YA
Sbjct: 361 LPPPYATREQDVAYA 375
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225450085|ref|XP_002277955.1| PREDICTED: tRNA-dihydrouridine synthase A-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/377 (82%), Positives = 349/377 (92%), Gaps = 2/377 (0%)
Query: 1 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF 60
MVA QYLPPWFSVAPMMDWT+NHYRTLARLISKHAWLYTEM+AAETI+YQ+ NLDRFL F
Sbjct: 57 MVAGQYLPPWFSVAPMMDWTNNHYRTLARLISKHAWLYTEMIAAETIVYQEKNLDRFLEF 116
Query: 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK 120
SP+QHPIVLQIGG+NLDN+AKATELAN+Y YDEINLNCGCPSPKVAGHGCFGV LMLDPK
Sbjct: 117 SPDQHPIVLQIGGNNLDNIAKATELANSYCYDEINLNCGCPSPKVAGHGCFGVRLMLDPK 176
Query: 121 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN 180
FV EAMSVIAAN++VPVSVKCRIGVDDHDSYN+LCDFIYKVSS SPTRHFIIHSRKALLN
Sbjct: 177 FVAEAMSVIAANSDVPVSVKCRIGVDDHDSYNELCDFIYKVSSQSPTRHFIIHSRKALLN 236
Query: 181 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240
GISPA+NR IPPLKYEYY+ LLRDFPDL FT+NGGIN VDEVNAALR+GAH VMVGRAAY
Sbjct: 237 GISPADNRKIPPLKYEYYFGLLRDFPDLRFTINGGINCVDEVNAALRQGAHGVMVGRAAY 296
Query: 241 QNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFF 300
NPWYTLGHVD+A+YGAP S L+RRQV+E+YQ+YGD++L YG +RP +R+V+KPLLHFF
Sbjct: 297 HNPWYTLGHVDSAVYGAPVSDLSRRQVLEQYQVYGDSVLEKYGPHRPSIREVVKPLLHFF 356
Query: 301 HSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVHDL 360
+SEPGNGL+KRKADAAF CKT+KSFLEET+VAIPDSVLD+P+ +AP GREDLFA++ DL
Sbjct: 357 YSEPGNGLWKRKADAAFFHCKTIKSFLEETLVAIPDSVLDAPVAKAPSGREDLFANLSDL 416
Query: 361 LPPPYKA--REQEVLYA 375
LP PY+ +EQEVLYA
Sbjct: 417 LPLPYETSEQEQEVLYA 433
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297736275|emb|CBI24913.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/377 (82%), Positives = 349/377 (92%), Gaps = 2/377 (0%)
Query: 1 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF 60
MVA QYLPPWFSVAPMMDWT+NHYRTLARLISKHAWLYTEM+AAETI+YQ+ NLDRFL F
Sbjct: 47 MVAGQYLPPWFSVAPMMDWTNNHYRTLARLISKHAWLYTEMIAAETIVYQEKNLDRFLEF 106
Query: 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK 120
SP+QHPIVLQIGG+NLDN+AKATELAN+Y YDEINLNCGCPSPKVAGHGCFGV LMLDPK
Sbjct: 107 SPDQHPIVLQIGGNNLDNIAKATELANSYCYDEINLNCGCPSPKVAGHGCFGVRLMLDPK 166
Query: 121 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN 180
FV EAMSVIAAN++VPVSVKCRIGVDDHDSYN+LCDFIYKVSS SPTRHFIIHSRKALLN
Sbjct: 167 FVAEAMSVIAANSDVPVSVKCRIGVDDHDSYNELCDFIYKVSSQSPTRHFIIHSRKALLN 226
Query: 181 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240
GISPA+NR IPPLKYEYY+ LLRDFPDL FT+NGGIN VDEVNAALR+GAH VMVGRAAY
Sbjct: 227 GISPADNRKIPPLKYEYYFGLLRDFPDLRFTINGGINCVDEVNAALRQGAHGVMVGRAAY 286
Query: 241 QNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFF 300
NPWYTLGHVD+A+YGAP S L+RRQV+E+YQ+YGD++L YG +RP +R+V+KPLLHFF
Sbjct: 287 HNPWYTLGHVDSAVYGAPVSDLSRRQVLEQYQVYGDSVLEKYGPHRPSIREVVKPLLHFF 346
Query: 301 HSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVHDL 360
+SEPGNGL+KRKADAAF CKT+KSFLEET+VAIPDSVLD+P+ +AP GREDLFA++ DL
Sbjct: 347 YSEPGNGLWKRKADAAFFHCKTIKSFLEETLVAIPDSVLDAPVAKAPSGREDLFANLSDL 406
Query: 361 LPPPYKA--REQEVLYA 375
LP PY+ +EQEVLYA
Sbjct: 407 LPLPYETSEQEQEVLYA 423
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359487300|ref|XP_003633563.1| PREDICTED: tRNA-dihydrouridine synthase A-like isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/377 (82%), Positives = 349/377 (92%), Gaps = 2/377 (0%)
Query: 1 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF 60
MVA QYLPPWFSVAPMMDWT+NHYRTLARLISKHAWLYTEM+AAETI+YQ+ NLDRFL F
Sbjct: 1 MVAGQYLPPWFSVAPMMDWTNNHYRTLARLISKHAWLYTEMIAAETIVYQEKNLDRFLEF 60
Query: 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK 120
SP+QHPIVLQIGG+NLDN+AKATELAN+Y YDEINLNCGCPSPKVAGHGCFGV LMLDPK
Sbjct: 61 SPDQHPIVLQIGGNNLDNIAKATELANSYCYDEINLNCGCPSPKVAGHGCFGVRLMLDPK 120
Query: 121 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN 180
FV EAMSVIAAN++VPVSVKCRIGVDDHDSYN+LCDFIYKVSS SPTRHFIIHSRKALLN
Sbjct: 121 FVAEAMSVIAANSDVPVSVKCRIGVDDHDSYNELCDFIYKVSSQSPTRHFIIHSRKALLN 180
Query: 181 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240
GISPA+NR IPPLKYEYY+ LLRDFPDL FT+NGGIN VDEVNAALR+GAH VMVGRAAY
Sbjct: 181 GISPADNRKIPPLKYEYYFGLLRDFPDLRFTINGGINCVDEVNAALRQGAHGVMVGRAAY 240
Query: 241 QNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFF 300
NPWYTLGHVD+A+YGAP S L+RRQV+E+YQ+YGD++L YG +RP +R+V+KPLLHFF
Sbjct: 241 HNPWYTLGHVDSAVYGAPVSDLSRRQVLEQYQVYGDSVLEKYGPHRPSIREVVKPLLHFF 300
Query: 301 HSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVHDL 360
+SEPGNGL+KRKADAAF CKT+KSFLEET+VAIPDSVLD+P+ +AP GREDLFA++ DL
Sbjct: 301 YSEPGNGLWKRKADAAFFHCKTIKSFLEETLVAIPDSVLDAPVAKAPSGREDLFANLSDL 360
Query: 361 LPPPYKA--REQEVLYA 375
LP PY+ +EQEVLYA
Sbjct: 361 LPLPYETSEQEQEVLYA 377
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449516697|ref|XP_004165383.1| PREDICTED: tRNA-dihydrouridine synthase A-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/373 (82%), Positives = 343/373 (91%), Gaps = 1/373 (0%)
Query: 1 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF 60
MVA +Y PPWFSVAPMM+ TDNHYRTLARLISKHAWLYTEMLAAETI+YQ+ NLDRFLAF
Sbjct: 57 MVAGRYSPPWFSVAPMMECTDNHYRTLARLISKHAWLYTEMLAAETIVYQKDNLDRFLAF 116
Query: 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK 120
SP+QHPIVLQIGG+NLDN+AKA ELAN Y YDEINLNCGCPSPKVAGHGCFGV LMLDPK
Sbjct: 117 SPDQHPIVLQIGGNNLDNIAKAIELANPYGYDEINLNCGCPSPKVAGHGCFGVRLMLDPK 176
Query: 121 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN 180
FVGEAMSVIAA T+ PVSVKCRIGVDDHDSYN+LCDFIYKVSSLSPT+HF+IHSRKALLN
Sbjct: 177 FVGEAMSVIAAKTDAPVSVKCRIGVDDHDSYNELCDFIYKVSSLSPTKHFVIHSRKALLN 236
Query: 181 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240
GISPAENRTIPPLKYEY+YAL+RDFPDL FT+NGGINTVDE NAALR GAH VM+GRAAY
Sbjct: 237 GISPAENRTIPPLKYEYFYALMRDFPDLRFTINGGINTVDEANAALRLGAHGVMMGRAAY 296
Query: 241 QNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFF 300
QNPW TLGHVDTAIYGAPSSG+TRRQV+E+YQ+YGD++LG YG N+P++RDV+KPLLH F
Sbjct: 297 QNPWRTLGHVDTAIYGAPSSGITRRQVLEQYQVYGDSVLGRYG-NKPNIRDVVKPLLHLF 355
Query: 301 HSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVHDL 360
+++PGNG +KRKADAAF CKT+KSF EETIVAIPD VLD+P+ E P GREDLFA+ L
Sbjct: 356 YTDPGNGPWKRKADAAFMHCKTIKSFFEETIVAIPDYVLDAPVAEPPSGREDLFANTLSL 415
Query: 361 LPPPYKAREQEVL 373
+PPPY+ REQ+V+
Sbjct: 416 MPPPYEDREQKVV 428
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449463996|ref|XP_004149715.1| PREDICTED: tRNA-dihydrouridine synthase A-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/373 (82%), Positives = 343/373 (91%), Gaps = 1/373 (0%)
Query: 1 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF 60
MVA +Y PPWFSVAPMM+ TDNHYRTLARLISKHAWLYTEMLAAETI+YQ+ NLDRFLAF
Sbjct: 57 MVAGRYSPPWFSVAPMMECTDNHYRTLARLISKHAWLYTEMLAAETIVYQKDNLDRFLAF 116
Query: 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK 120
SP+QHPIVLQIGG+NLDN+AKA ELAN Y YDEINLNCGCPSPKVAGHGCFGV LMLDPK
Sbjct: 117 SPDQHPIVLQIGGNNLDNIAKAIELANPYGYDEINLNCGCPSPKVAGHGCFGVRLMLDPK 176
Query: 121 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN 180
FVGEAMSVIAA T+ PVSVKCRIGVDDHDSYN+LCDFIYKVSSLSPT+HF+IHSRKALLN
Sbjct: 177 FVGEAMSVIAAKTDAPVSVKCRIGVDDHDSYNELCDFIYKVSSLSPTKHFVIHSRKALLN 236
Query: 181 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240
GISPAENRTIPPLKYEY+YAL+RDFPDL FT+NGGINTVDE NAALR GAH VM+GRAAY
Sbjct: 237 GISPAENRTIPPLKYEYFYALMRDFPDLRFTINGGINTVDEANAALRLGAHGVMMGRAAY 296
Query: 241 QNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFF 300
QNPW TLGHVDTAIYGAPSSG+TRRQV+E+YQ+YGD++LG YG N+P++RDV+KPLLH F
Sbjct: 297 QNPWRTLGHVDTAIYGAPSSGITRRQVLEQYQVYGDSVLGRYG-NKPNIRDVVKPLLHLF 355
Query: 301 HSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVHDL 360
+++PGNG +KRKADAAF CKT+KSF EETIVAIPD VLD+P+ E P GREDLFA+ L
Sbjct: 356 YTDPGNGPWKRKADAAFMHCKTIKSFFEETIVAIPDYVLDAPVAEPPSGREDLFANTLSL 415
Query: 361 LPPPYKAREQEVL 373
+PPPY+ REQ+V+
Sbjct: 416 MPPPYEDREQKVV 428
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224055152|ref|XP_002298425.1| predicted protein [Populus trichocarpa] gi|222845683|gb|EEE83230.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/375 (82%), Positives = 341/375 (90%), Gaps = 2/375 (0%)
Query: 1 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF 60
M QY PP FSVAPMMDWTDNHYRT+AR+ISKHAWLYTEMLAAETI++QQG+LDRFLAF
Sbjct: 1 MGVEQYRPPLFSVAPMMDWTDNHYRTVARIISKHAWLYTEMLAAETIVHQQGDLDRFLAF 60
Query: 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK 120
SPEQHPIVLQIGG+NLDN+AKAT LAN+Y YDEINLNCGCPSPKVAGHGCFGV LMLDPK
Sbjct: 61 SPEQHPIVLQIGGNNLDNIAKATRLANSYGYDEINLNCGCPSPKVAGHGCFGVRLMLDPK 120
Query: 121 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN 180
FVGEAMSVIAANT+VPVSVKCRIG+DDHDSYN+LCDFIYKVSSLSPT+HFIIHSRKALLN
Sbjct: 121 FVGEAMSVIAANTDVPVSVKCRIGLDDHDSYNELCDFIYKVSSLSPTKHFIIHSRKALLN 180
Query: 181 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240
GISPA+NR IPPLKYEYYYALLRDFPDL FT+NGGIN VDEVNAALR+GAH VMVGRAAY
Sbjct: 181 GISPADNRRIPPLKYEYYYALLRDFPDLRFTINGGINCVDEVNAALREGAHGVMVGRAAY 240
Query: 241 QNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFF 300
W TL HVDTAIYGAPSSGLTRRQV+E+YQ+YGDA+LGTYGN+RP++RD++KPL FF
Sbjct: 241 NYLWNTLAHVDTAIYGAPSSGLTRRQVLEQYQVYGDAVLGTYGNSRPNIRDLIKPLFGFF 300
Query: 301 HSEPGNGLFKRKADAAFQ--TCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVH 358
+SEPGN L+KRKADAAFQ TVKSF EET+VAIPD+VLDS E P GR+DLFA+V
Sbjct: 301 YSEPGNNLWKRKADAAFQMKNITTVKSFFEETLVAIPDAVLDSHAAELPSGRKDLFANVR 360
Query: 359 DLLPPPYKAREQEVL 373
LLPPPY+ REQEV+
Sbjct: 361 GLLPPPYETREQEVV 375
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525006|ref|XP_003531118.1| PREDICTED: tRNA-dihydrouridine synthase A-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust.
Identities = 298/373 (79%), Positives = 338/373 (90%), Gaps = 2/373 (0%)
Query: 1 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF 60
+VAR +LPPWFSVAPMMDWTD+HYRTLARLISKHAWLYTEMLAAETI++Q+ NLDRFLA+
Sbjct: 57 VVARYHLPPWFSVAPMMDWTDHHYRTLARLISKHAWLYTEMLAAETIVHQKDNLDRFLAY 116
Query: 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK 120
SP+QHPIVLQIGGSN++NLAKATELANAY YDEINLNCGCPSPKVAGHGCFGVSLML+PK
Sbjct: 117 SPDQHPIVLQIGGSNIENLAKATELANAYCYDEINLNCGCPSPKVAGHGCFGVSLMLNPK 176
Query: 121 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN 180
FV EAMS IAA+TNVPVSVKCRIGVDDHDSYN+LCDFIY+VSSLSPT+HFIIHSRKALLN
Sbjct: 177 FVAEAMSAIAASTNVPVSVKCRIGVDDHDSYNELCDFIYQVSSLSPTKHFIIHSRKALLN 236
Query: 181 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240
GISPAENR+IPPLKYEY+Y LLRDFPDL FT+NGGI +VDEV+AA GAH VMVGRAAY
Sbjct: 237 GISPAENRSIPPLKYEYFYGLLRDFPDLRFTINGGITSVDEVSAAREAGAHGVMVGRAAY 296
Query: 241 QNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFF 300
NPW LGHVD AIYG PS LTRRQV+E+Y +YGD++LG YG +RP +RD++KPLLH F
Sbjct: 297 NNPWQILGHVDAAIYGTPSCDLTRRQVLERYLVYGDSVLGKYG-HRPTLRDIVKPLLHLF 355
Query: 301 HSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVHDL 360
HSEPGNGL+KRKADAAF+ C T++SF EET+VAIPDSVLDSP+ E P GR DLFA++H+L
Sbjct: 356 HSEPGNGLWKRKADAAFKNCTTMESFFEETLVAIPDSVLDSPVAEPPPGR-DLFANMHNL 414
Query: 361 LPPPYKAREQEVL 373
LP PY+ RE V+
Sbjct: 415 LPAPYRTREATVI 427
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224106093|ref|XP_002314040.1| predicted protein [Populus trichocarpa] gi|222850448|gb|EEE87995.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust.
Identities = 299/375 (79%), Positives = 337/375 (89%), Gaps = 2/375 (0%)
Query: 1 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF 60
M A +Y PP FSVAPMM+WTD HYRT+AR+ISKHAWLYTEMLAAETI+YQQGNLDRFLAF
Sbjct: 1 MGAERYRPPLFSVAPMMEWTDKHYRTVARIISKHAWLYTEMLAAETIVYQQGNLDRFLAF 60
Query: 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK 120
EQHPIVLQIGG+NLDN+AKAT+LANAY +DEINLNCGCPS KVAGHGCFG LMLDPK
Sbjct: 61 PSEQHPIVLQIGGNNLDNIAKATQLANAYGFDEINLNCGCPSAKVAGHGCFGARLMLDPK 120
Query: 121 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN 180
FV EAMSVIAANT+VPVSVKCRIGVDDHDSYN+LCDFIYKVSSLSPT+HFIIHSRKALLN
Sbjct: 121 FVSEAMSVIAANTDVPVSVKCRIGVDDHDSYNELCDFIYKVSSLSPTKHFIIHSRKALLN 180
Query: 181 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240
GISPA+NR IPPLKYEYYYALLRDFPDL FT+NGGI+ VDEVNAALR+GAH VMVGRAAY
Sbjct: 181 GISPADNRRIPPLKYEYYYALLRDFPDLRFTINGGIDCVDEVNAALREGAHGVMVGRAAY 240
Query: 241 QNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFF 300
N W TL HVD+A+YG PSSGLTRRQV+E+YQ+YGDA+LGTYGNNRP++R++++PL FF
Sbjct: 241 NNLWNTLAHVDSAVYGEPSSGLTRRQVLEQYQVYGDAVLGTYGNNRPNMRELIRPLSGFF 300
Query: 301 HSEPGNGLFKRKADAAF--QTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVH 358
+SEPGN L+KRKADAAF + KTVKSF EET+ AIPD+VLDSP+ E P GR DLFA+V
Sbjct: 301 YSEPGNSLWKRKADAAFLNKNIKTVKSFFEETLAAIPDAVLDSPVAELPSGRIDLFANVR 360
Query: 359 DLLPPPYKAREQEVL 373
LLPPPY+ R +EV+
Sbjct: 361 GLLPPPYETRTEEVV 375
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388507496|gb|AFK41814.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust.
Identities = 297/368 (80%), Positives = 329/368 (89%), Gaps = 1/368 (0%)
Query: 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
YLPPWFSVAPMM+WTD+HYRTLARLISKHAWLYTEMLAAETI+YQQ NLDRFLAFSP+QH
Sbjct: 56 YLPPWFSVAPMMEWTDHHYRTLARLISKHAWLYTEMLAAETIVYQQDNLDRFLAFSPDQH 115
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
PIVLQIGGSN++ LAKATELANAY YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFV EA
Sbjct: 116 PIVLQIGGSNVEKLAKATELANAYGYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVAEA 175
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
MS I ANTNVPVSVKCRIGVDDHDSY++LCDFI+KVSSLSPT+HFIIHSRKALLNGISPA
Sbjct: 176 MSAITANTNVPVSVKCRIGVDDHDSYDELCDFIFKVSSLSPTKHFIIHSRKALLNGISPA 235
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR+IPPLKYEY+Y LLRDFPDLTFT+NGGI +VDEV AA GA+ V VGRAAY NPW+
Sbjct: 236 ENRSIPPLKYEYFYGLLRDFPDLTFTINGGITSVDEVYAAREAGAYGVTVGRAAYNNPWH 295
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
LGHVDT IYGAPS LTRRQV+EKY +YGD++LG YG RP VRD++KPLL+ FHS PG
Sbjct: 296 ILGHVDTVIYGAPSCSLTRRQVLEKYIVYGDSVLGKYG-RRPTVRDIVKPLLNLFHSAPG 354
Query: 306 NGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVHDLLPPPY 365
NGL+KRKADAAF+ C T+KSF EET+VAIPDSVLDSP+ E GR DLFA++ LLPPPY
Sbjct: 355 NGLWKRKADAAFRHCTTIKSFFEETLVAIPDSVLDSPVVEPTPGRRDLFANMDSLLPPPY 414
Query: 366 KAREQEVL 373
RE+ V+
Sbjct: 415 TTREEAVI 422
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 376 | ||||||
| TAIR|locus:2087408 | 419 | AT3G63510 [Arabidopsis thalian | 0.984 | 0.883 | 0.773 | 2.7e-162 | |
| TAIR|locus:2152758 | 387 | AT5G47970 [Arabidopsis thalian | 0.989 | 0.961 | 0.723 | 3.2e-152 | |
| UNIPROTKB|P32695 | 330 | dusA "tRNA-dihydrouridine synt | 0.773 | 0.881 | 0.451 | 1.7e-59 | |
| UNIPROTKB|Q9KUX9 | 327 | dusA "tRNA-dihydrouridine synt | 0.835 | 0.960 | 0.416 | 4.5e-59 | |
| TIGR_CMR|VC_0379 | 327 | VC_0379 "TIM-barrel protein, y | 0.835 | 0.960 | 0.416 | 4.5e-59 | |
| UNIPROTKB|Q8EAJ0 | 335 | dusA "tRNA-dihydrouridine synt | 0.771 | 0.865 | 0.425 | 9.3e-59 | |
| TIGR_CMR|SO_3912 | 335 | SO_3912 "TIM-barrel protein, y | 0.771 | 0.865 | 0.425 | 9.3e-59 | |
| GENEDB_PFALCIPARUM|PFI0920c | 577 | PFI0920c "Dihydrouridine synth | 0.577 | 0.376 | 0.463 | 2.3e-58 | |
| UNIPROTKB|Q8I2W5 | 577 | PFI0920c "Dihydrouridine synth | 0.577 | 0.376 | 0.463 | 2.3e-58 | |
| UNIPROTKB|Q607T6 | 360 | MCA1669 "tRNA-dihydrouridine s | 0.771 | 0.805 | 0.425 | 4e-58 |
| TAIR|locus:2087408 AT3G63510 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1580 (561.2 bits), Expect = 2.7e-162, P = 2.7e-162
Identities = 287/371 (77%), Positives = 337/371 (90%)
Query: 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
YLPP FSVAPMMDWTDNHYRTLARLI+KHAWLYTEM+AAET+++QQ NLDRFLAFSP+QH
Sbjct: 49 YLPPSFSVAPMMDWTDNHYRTLARLITKHAWLYTEMIAAETLVHQQTNLDRFLAFSPQQH 108
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
PIVLQ+GGSN++NLAKA +L++AY YDEINLNCGCPSPKVAGHGCFGVSLML PK VGEA
Sbjct: 109 PIVLQLGGSNVENLAKAAKLSDAYGYDEINLNCGCPSPKVAGHGCFGVSLMLKPKLVGEA 168
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
MS IAANTNVPV+VKCRIGVD+HDSY++LCDFIYKVS+LSPTRHFI+HSRKALL GISPA
Sbjct: 169 MSAIAANTNVPVTVKCRIGVDNHDSYDELCDFIYKVSTLSPTRHFIVHSRKALLGGISPA 228
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
+NR IPPLKYEYYYAL+RDFPDL FT+NGGI +V +VNAAL++GAH VMVGRAAY NPW
Sbjct: 229 DNRRIPPLKYEYYYALVRDFPDLRFTINGGITSVSKVNAALKEGAHGVMVGRAAYNNPWQ 288
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
TLG VDTA+YG PSSGLTRRQV+E+YQ+YGD++LGT+GN RP+VRD++KPLL+ FHSE G
Sbjct: 289 TLGQVDTAVYGVPSSGLTRRQVLEQYQVYGDSVLGTHGNGRPNVRDLVKPLLNLFHSENG 348
Query: 306 NGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPR-GREDLFADVHDLLPPP 364
N L+KR+ADAAF+ C++V S LEE++ AIPD VLDSPI +P G ED+FADVH++LPPP
Sbjct: 349 NSLWKRRADAAFKECRSVGSLLEESLRAIPDCVLDSPISGSPESGDEDVFADVHNVLPPP 408
Query: 365 YKAREQEVLYA 375
Y+A E+ +L A
Sbjct: 409 YEAGEEIILCA 419
|
|
| TAIR|locus:2152758 AT5G47970 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1485 (527.8 bits), Expect = 3.2e-152, P = 3.2e-152
Identities = 269/372 (72%), Positives = 318/372 (85%)
Query: 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFS 61
V+ Y PP FS+APMM WTDNHYRTLARLI+KHAWLYTEMLAAETI+YQ+ NLD FLAFS
Sbjct: 3 VSEAYSPPLFSIAPMMGWTDNHYRTLARLITKHAWLYTEMLAAETIVYQEDNLDSFLAFS 62
Query: 62 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKF 121
P+QHPIVLQIGG NL+NLAKAT LANAY YDEIN NCGCPSPKV+G GCFG LMLDPKF
Sbjct: 63 PDQHPIVLQIGGRNLENLAKATRLANAYAYDEINFNCGCPSPKVSGRGCFGALLMLDPKF 122
Query: 122 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNG 181
VGEAMSVIAANTN V+VKCRIGVDDHDSYN+LCDFI+ VSSLSPT+HFIIHSRKALL+G
Sbjct: 123 VGEAMSVIAANTNAAVTVKCRIGVDDHDSYNELCDFIHIVSSLSPTKHFIIHSRKALLSG 182
Query: 182 ISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241
+SP++NR IPPLKYE+++ALLRDFPDL FT+NGGIN+V E +AALR GAH VM+GRA Y
Sbjct: 183 LSPSDNRRIPPLKYEFFFALLRDFPDLKFTINGGINSVVEADAALRSGAHGVMLGRAVYY 242
Query: 242 NPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFH 301
NPW+ LGHVDT +YG+PSSG+TRRQV+EKY++YG+++LG YG RP++RD+++PL++ FH
Sbjct: 243 NPWHILGHVDTVVYGSPSSGITRRQVLEKYKLYGESVLGKYGKGRPNLRDIVRPLINLFH 302
Query: 302 SEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVHDLL 361
SE GNG +KR+ DAA C T++SFL+E + AIPD VLDS + GREDLFADV LL
Sbjct: 303 SESGNGQWKRRTDAALLHCTTLQSFLDEVLPAIPDYVLDSSAVKEATGREDLFADVQRLL 362
Query: 362 PPPYKAREQEVL 373
PPPY+ + L
Sbjct: 363 PPPYEKESFKAL 374
|
|
| UNIPROTKB|P32695 dusA "tRNA-dihydrouridine synthase A" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
Identities = 136/301 (45%), Positives = 182/301 (60%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 189 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPGI-LAAV 246
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G+ + VV Y + L + G H+ + +L F PG ++
Sbjct: 247 DREIFGSSDTDADPVAVVRAMYPYIEREL-SQGTYLGHIT---RHMLGLFQGIPGARQWR 302
Query: 311 R 311
R
Sbjct: 303 R 303
|
|
| UNIPROTKB|Q9KUX9 dusA "tRNA-dihydrouridine synthase A" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
Identities = 135/324 (41%), Positives = 185/324 (57%)
Query: 12 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 71
SVAPM+DWTD H R RL+S LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 8 SVAPMLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGD---FLAYNQEEHPVALQF 64
Query: 72 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 131
GGSN +LA +LA YDEINLN GCPS +V +G FG LM +P V E ++ + A
Sbjct: 65 GGSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMGEPDLVAECVAAMRA 123
Query: 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191
++PV+VK RIG+DD DSY L FI V+ F IH+RKA L+G+SP ENR IP
Sbjct: 124 VVDIPVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIP 183
Query: 192 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 251
PL Y Y + RDFP LT +NGG+ +++E L+ VM+GR AYQNP Y L VD
Sbjct: 184 PLDYPRAYQIKRDFPHLTIAVNGGVKSLEEAKLHLQH-LDGVMIGREAYQNP-YLLAEVD 241
Query: 252 TAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
I+G + R QV+ + Y + L + G H+ + + +L F + PG ++R
Sbjct: 242 QQIFGLETPVKKRSQVIHEMMPYIEREL-SQGT---HLGHMTRHMLGLFQNMPGARQWRR 297
Query: 312 KADAAFQTCKTVKSFLEETIVAIP 335
+E+ + IP
Sbjct: 298 HISENAHKPGAGLEVVEQALAKIP 321
|
|
| TIGR_CMR|VC_0379 VC_0379 "TIM-barrel protein, yjbN family" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
Identities = 135/324 (41%), Positives = 185/324 (57%)
Query: 12 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 71
SVAPM+DWTD H R RL+S LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 8 SVAPMLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGD---FLAYNQEEHPVALQF 64
Query: 72 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 131
GGSN +LA +LA YDEINLN GCPS +V +G FG LM +P V E ++ + A
Sbjct: 65 GGSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMGEPDLVAECVAAMRA 123
Query: 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191
++PV+VK RIG+DD DSY L FI V+ F IH+RKA L+G+SP ENR IP
Sbjct: 124 VVDIPVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIP 183
Query: 192 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 251
PL Y Y + RDFP LT +NGG+ +++E L+ VM+GR AYQNP Y L VD
Sbjct: 184 PLDYPRAYQIKRDFPHLTIAVNGGVKSLEEAKLHLQH-LDGVMIGREAYQNP-YLLAEVD 241
Query: 252 TAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
I+G + R QV+ + Y + L + G H+ + + +L F + PG ++R
Sbjct: 242 QQIFGLETPVKKRSQVIHEMMPYIEREL-SQGT---HLGHMTRHMLGLFQNMPGARQWRR 297
Query: 312 KADAAFQTCKTVKSFLEETIVAIP 335
+E+ + IP
Sbjct: 298 HISENAHKPGAGLEVVEQALAKIP 321
|
|
| UNIPROTKB|Q8EAJ0 dusA "tRNA-dihydrouridine synthase A" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
Identities = 128/301 (42%), Positives = 183/301 (60%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD HYR ARL+S +A LYTEM+ I++ +G+ +L ++ E+HP+ LQ
Sbjct: 16 FSIAPMLDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGD---YLTYNQEEHPLALQ 72
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN LA+ +LA YDE+NLN GCPS +V +G FG LM +P+ V E + +
Sbjct: 73 LGGSNPVELARCAKLAAERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPELVAECVDAMK 131
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY L FI V + FIIH+RKA L G+SP ENR I
Sbjct: 132 QVVDIPVTVKTRIGIDEQDSYEFLTHFIDTVMAKG-CGEFIIHARKAWLQGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ Y L RD+P L ++NGGI ++++ L+ VMVGR AYQNP Y L V
Sbjct: 191 PPLDYDRVYQLKRDYPALNISINGGITSLEQAQTHLQH-LDGVMVGREAYQNP-YMLAQV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D + G+ + ++R V+E Y +A L G + + + ++ F PG ++
Sbjct: 249 DQVLCGSTKAVMSREAVIEAMLPYIEAHLQVGGR----LNHITRHMIGLFQGLPGARAWR 304
Query: 311 R 311
R
Sbjct: 305 R 305
|
|
| TIGR_CMR|SO_3912 SO_3912 "TIM-barrel protein, yjbN family" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
Identities = 128/301 (42%), Positives = 183/301 (60%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD HYR ARL+S +A LYTEM+ I++ +G+ +L ++ E+HP+ LQ
Sbjct: 16 FSIAPMLDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGD---YLTYNQEEHPLALQ 72
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN LA+ +LA YDE+NLN GCPS +V +G FG LM +P+ V E + +
Sbjct: 73 LGGSNPVELARCAKLAAERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPELVAECVDAMK 131
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY L FI V + FIIH+RKA L G+SP ENR I
Sbjct: 132 QVVDIPVTVKTRIGIDEQDSYEFLTHFIDTVMAKG-CGEFIIHARKAWLQGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ Y L RD+P L ++NGGI ++++ L+ VMVGR AYQNP Y L V
Sbjct: 191 PPLDYDRVYQLKRDYPALNISINGGITSLEQAQTHLQH-LDGVMVGREAYQNP-YMLAQV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D + G+ + ++R V+E Y +A L G + + + ++ F PG ++
Sbjct: 249 DQVLCGSTKAVMSREAVIEAMLPYIEAHLQVGGR----LNHITRHMIGLFQGLPGARAWR 304
Query: 311 R 311
R
Sbjct: 305 R 305
|
|
| GENEDB_PFALCIPARUM|PFI0920c PFI0920c "Dihydrouridine synthase, putative" [Plasmodium falciparum (taxid:5833)] | Back alignment and assigned GO terms |
|---|
Score = 520 (188.1 bits), Expect = 2.3e-58, Sum P(2) = 2.3e-58
Identities = 101/218 (46%), Positives = 142/218 (65%)
Query: 9 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIV 68
P+ VAPM++ T+ H+R + R+I+K A L+TEM+ T++Y NL+ L F +HPIV
Sbjct: 198 PFIQVAPMINVTNRHFRAMVRIITKRAQLWTEMIVDNTLLYNLNNLEEHLGFDNNEHPIV 257
Query: 69 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 128
Q+GG +++++++A L YDEIN+N GCPS KVA G FG SLM +P+ V +
Sbjct: 258 CQLGGCDMNSMSEAAILVEQAGYDEININVGCPSTKVANKGAFGASLMKNPEQVRNIVYE 317
Query: 129 IAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR 188
I +PV+VK R GVD++DS++ L FI VSS+ HFI+H+RKA L G+ P +NR
Sbjct: 318 IKKKVQIPVTVKIRTGVDNYDSFDFLKTFIETVSSVG-CNHFIVHARKAWLKGLDPKQNR 376
Query: 189 TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL 226
IPPL+Y Y L + +P L FTLNGGI T+ E A L
Sbjct: 377 KIPPLEYYKVYDLCKLYPHLKFTLNGGIQTIQEAIALL 414
|
|
| UNIPROTKB|Q8I2W5 PFI0920c "Dihydrouridine synthase, putative" [Plasmodium falciparum 3D7 (taxid:36329)] | Back alignment and assigned GO terms |
|---|
Score = 520 (188.1 bits), Expect = 2.3e-58, Sum P(2) = 2.3e-58
Identities = 101/218 (46%), Positives = 142/218 (65%)
Query: 9 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIV 68
P+ VAPM++ T+ H+R + R+I+K A L+TEM+ T++Y NL+ L F +HPIV
Sbjct: 198 PFIQVAPMINVTNRHFRAMVRIITKRAQLWTEMIVDNTLLYNLNNLEEHLGFDNNEHPIV 257
Query: 69 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 128
Q+GG +++++++A L YDEIN+N GCPS KVA G FG SLM +P+ V +
Sbjct: 258 CQLGGCDMNSMSEAAILVEQAGYDEININVGCPSTKVANKGAFGASLMKNPEQVRNIVYE 317
Query: 129 IAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR 188
I +PV+VK R GVD++DS++ L FI VSS+ HFI+H+RKA L G+ P +NR
Sbjct: 318 IKKKVQIPVTVKIRTGVDNYDSFDFLKTFIETVSSVG-CNHFIVHARKAWLKGLDPKQNR 376
Query: 189 TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL 226
IPPL+Y Y L + +P L FTLNGGI T+ E A L
Sbjct: 377 KIPPLEYYKVYDLCKLYPHLKFTLNGGIQTIQEAIALL 414
|
|
| UNIPROTKB|Q607T6 MCA1669 "tRNA-dihydrouridine synthase" [Methylococcus capsulatus str. Bath (taxid:243233)] | Back alignment and assigned GO terms |
|---|
Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
Identities = 128/301 (42%), Positives = 177/301 (58%)
Query: 12 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 71
SVAPMMDWTD H R RLIS+H LYTEM+ I++ G+ +R L F P +HP+ +Q+
Sbjct: 31 SVAPMMDWTDRHCRFFLRLISRHTLLYTEMVTTAAILH--GDRERLLGFHPAEHPLAIQL 88
Query: 72 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 131
GGS+ + LA+ ++A +DE+NLN GCPSP+V G FG LM +P+ V + + +
Sbjct: 89 GGSDPEALAECAKIAEFRGFDEVNLNVGCPSPRVQT-GRFGACLMAEPERVADCVRAMCE 147
Query: 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191
+VPV+VK RIG+DD DSY L F+ V+ R FI+H+RKA L G+SP ENR P
Sbjct: 148 AVSVPVTVKTRIGIDDRDSYEDLLHFVTIVAEAG-CRTFIVHARKAWLQGLSPKENRQTP 206
Query: 192 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 251
PL+Y+ L + P+L LNGGI T+DE L VM+GRAAY NP Y L D
Sbjct: 207 PLRYDVVRRLKSELPELAIVLNGGIQTLDEAERHL-SWCDGVMIGRAAYHNP-YLLAEAD 264
Query: 252 TAIYG-APSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
YG + TR +V+E + Y L +R H + + +L +H+ PG ++
Sbjct: 265 RRCYGHSDVRPRTREEVIEDFMPYVRNELSK--GSRLHA--LTRHILGLYHATPGGKRWR 320
Query: 311 R 311
R
Sbjct: 321 R 321
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8ZKH4 | DUSA_SALTY | 1, ., -, ., -, ., - | 0.4186 | 0.8537 | 0.9668 | yes | no |
| Q9KUX9 | DUSA_VIBCH | 1, ., -, ., -, ., - | 0.4123 | 0.8377 | 0.9633 | yes | no |
| Q9CL29 | DUSA_PASMU | 1, ., -, ., -, ., - | 0.4263 | 0.8085 | 0.9296 | yes | no |
| Q87AY2 | DUSA_XYLFT | 1, ., -, ., -, ., - | 0.3909 | 0.8164 | 0.9246 | yes | no |
| P44794 | DUSA_HAEIN | 1, ., -, ., -, ., - | 0.4123 | 0.8164 | 0.9388 | yes | no |
| Q87L85 | DUSA_VIBPA | 1, ., -, ., -, ., - | 0.4024 | 0.8457 | 0.9754 | yes | no |
| Q8EAJ0 | DUSA_SHEON | 1, ., -, ., -, ., - | 0.4030 | 0.8297 | 0.9313 | yes | no |
| Q884G7 | DUSA_PSESM | 1, ., -, ., -, ., - | 0.3885 | 0.8377 | 0.9375 | yes | no |
| Q8ZJ14 | DUSA_YERPE | 1, ., -, ., -, ., - | 0.3827 | 0.8696 | 0.9478 | yes | no |
| Q8CWK7 | DUSA_VIBVU | 1, ., -, ., -, ., - | 0.4024 | 0.8457 | 0.9754 | yes | no |
| Q9PGB5 | DUSA_XYLFA | 1, ., -, ., -, ., - | 0.3813 | 0.8244 | 0.9117 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 376 | |||
| PRK11815 | 333 | PRK11815, PRK11815, tRNA-dihydrouridine synthase A | 1e-134 | |
| TIGR00742 | 318 | TIGR00742, yjbN, tRNA dihydrouridine synthase A | 4e-98 | |
| cd02801 | 231 | cd02801, DUS_like_FMN, Dihydrouridine synthase-lik | 8e-78 | |
| COG0042 | 323 | COG0042, COG0042, tRNA-dihydrouridine synthase [Tr | 1e-70 | |
| pfam01207 | 309 | pfam01207, Dus, Dihydrouridine synthase (Dus) | 3e-57 | |
| TIGR00737 | 319 | TIGR00737, nifR3_yhdG, putative TIM-barrel protein | 2e-33 | |
| PRK10415 | 321 | PRK10415, PRK10415, tRNA-dihydrouridine synthase B | 4e-11 | |
| PRK10550 | 312 | PRK10550, PRK10550, tRNA-dihydrouridine synthase C | 1e-06 | |
| cd04740 | 296 | cd04740, DHOD_1B_like, Dihydroorotate dehydrogenas | 1e-05 | |
| PRK07259 | 301 | PRK07259, PRK07259, dihydroorotate dehydrogenase 1 | 8e-05 | |
| TIGR01037 | 300 | TIGR01037, pyrD_sub1_fam, dihydroorotate dehydroge | 1e-04 | |
| cd02911 | 233 | cd02911, arch_FMN, Archeal FMN-binding domain | 0.002 |
| >gnl|CDD|236991 PRK11815, PRK11815, tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Score = 385 bits (992), Expect = e-134
Identities = 140/315 (44%), Positives = 192/315 (60%), Gaps = 18/315 (5%)
Query: 1 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF 60
+ FSVAPMMDWTD H R RL+S+HA LYTEM+ II+ G+ +R LAF
Sbjct: 3 EKMSKLPSRRFSVAPMMDWTDRHCRYFHRLLSRHALLYTEMVTTGAIIH--GDRERLLAF 60
Query: 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK 120
PE+HP+ LQ+GGS+ +LA+A +LA + YDEINLN GCPS +V +G FG LM +P+
Sbjct: 61 DPEEHPVALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQ-NGRFGACLMAEPE 119
Query: 121 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN 180
V + + + ++PV+VK RIG+DD DSY LCDF+ V+ + FI+H+RKA L
Sbjct: 120 LVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAE-AGCDTFIVHARKAWLK 178
Query: 181 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK--GAHHVMVGRA 238
G+SP ENR IPPL Y+ Y L RDFP LT +NGGI T++E L+ G VM+GRA
Sbjct: 179 GLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQHVDG---VMIGRA 235
Query: 239 AYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPL 296
AY NP+ L VD ++G P+ L+R +V+E Y + L G + + + +
Sbjct: 236 AYHNPYL-LAEVDRELFGEPAPPLSRSEVLEAMLPYIERHLAQGGR------LNHITRHM 288
Query: 297 LHFFHSEPGNGLFKR 311
L F PG ++R
Sbjct: 289 LGLFQGLPGARAWRR 303
|
Length = 333 |
| >gnl|CDD|129825 TIGR00742, yjbN, tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Score = 294 bits (753), Expect = 4e-98
Identities = 138/326 (42%), Positives = 193/326 (59%), Gaps = 10/326 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H+R RL+SKH LYTEM+ A+ II+ G+ L FSPE+ P+ LQ
Sbjct: 3 FSVAPMLDWTDRHFRYFLRLLSKHTLLYTEMITAKAIIH--GDKKDILKFSPEESPVALQ 60
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ ++LAK ++A YDEINLN GCPS +V +G FG LM + V + + +
Sbjct: 61 LGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQ-NGNFGACLMGNADLVADCVKAMQ 119
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
N+PV+VK RIG+D DSY LCDF+ VS ++FI+H+RKA L+G+SP ENR I
Sbjct: 120 EAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKG-CQNFIVHARKAWLSGLSPKENREI 178
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+YE Y L +DFP LT +NGGI +++ L VMVGR AY+NP Y L +V
Sbjct: 179 PPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLSH-VDGVMVGREAYENP-YLLANV 236
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+ LTR+++VE+ Y + Y + + + + LL F +PG ++
Sbjct: 237 DREIFNETDEILTRKEIVEQMLPY----IEEYLSQGLSLNHITRHLLGLFQGKPGAKQWR 292
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPD 336
R LE + +P+
Sbjct: 293 RYLSENAPKAGAGIEVLETALETVPE 318
|
This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). It represents a distinct subset by a set of shared unique motifs, a conserved pattern of insertions/deletions relative to other nifR3 homologs, and by subclustering based on cross-genome bidirectional best hits. Members are found in species as diverse as the proteobacteria, a spirochete, a cyanobacterium, and Deinococcus radiodurans. NifR3 itself, a protein of unknown function associated with nitrogen regulation in Rhodobacter capsulatus, is not a member of this branch. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase [Protein synthesis, tRNA and rRNA base modification]. Length = 318 |
| >gnl|CDD|239200 cd02801, DUS_like_FMN, Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Score = 238 bits (611), Expect = 8e-78
Identities = 70/235 (29%), Positives = 117/235 (49%), Gaps = 16/235 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
+APM+ TD +R L R +YTEM++A+ ++ R L +PE+ P+++Q
Sbjct: 2 LILAPMVGVTDLPFRLLCRRYG-ADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQ 60
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + LA+A ++ D I+LN GCPSPKV G G +L+ DP+ V E + +
Sbjct: 61 LGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVT-KGGAGAALLKDPELVAEIVRAVR 119
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VK R+G DD + + + + + +H R E R
Sbjct: 120 EAVPIPVTVKIRLGWDDEE---ETLELAKALED-AGASALTVHGRT--------REQRYS 167
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPW 244
P ++Y +++ + NG I ++++ L + G VM+GR A NPW
Sbjct: 168 GPADWDYIAE-IKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPW 221
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. Length = 231 |
| >gnl|CDD|223120 COG0042, COG0042, tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 223 bits (571), Expect = 1e-70
Identities = 92/325 (28%), Positives = 154/325 (47%), Gaps = 19/325 (5%)
Query: 7 LPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHP 66
L +APM TD +R LAR + + LYTEM++A+ +++ + L E+ P
Sbjct: 9 LRNRVILAPMAGVTDLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERP 68
Query: 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 126
+ +Q+GGS+ + LA+A ++A D I+LNCGCPSPKV G G +L+ +P+ + E +
Sbjct: 69 VAVQLGGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGG-AGAALLKNPELLAEIV 127
Query: 127 S-VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
++ A ++PV+VK R+G DD D L I ++ + +H R + PA
Sbjct: 128 KAMVEAVGDIPVTVKIRLGWDDDDI---LALEIARILEDAGADALTVHGRTRAQGYLGPA 184
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPW 244
+ ++Y L P + NG I ++++ L GA VM+GR A NPW
Sbjct: 185 D--------WDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPW 236
Query: 245 YTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEP 304
L + T +V++ + + + +L YG +R + K L ++ P
Sbjct: 237 --LFRQIDYLETGELLPPTLAEVLDILREHLELLLEYYGKK--GLRRLRKHLGYYLKGLP 292
Query: 305 GNGLFKRKADAAFQTCKTVKSFLEE 329
G +R + V+ LE
Sbjct: 293 GARELRRAL-NKAEDGAEVRRALEA 316
|
Length = 323 |
| >gnl|CDD|216365 pfam01207, Dus, Dihydrouridine synthase (Dus) | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 3e-57
Identities = 78/311 (25%), Positives = 127/311 (40%), Gaps = 20/311 (6%)
Query: 12 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH--PIVL 69
+APM TD +R L R + TEM+ A+ + R L + P+ +
Sbjct: 1 LLAPMAGVTDLPFRRLVREYGAGDLVVTEMVTAKAQLR--PEKQRELMLPELEEPTPLAV 58
Query: 70 QIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI 129
Q+GGS+ LA+A +L D I++N GCP+ KV G G +L+ DP V + + +
Sbjct: 59 QLGGSDPALLAEAAKLVADLGADIIDINMGCPAKKVTRGG-AGAALLRDPDLVAQIVKAV 117
Query: 130 AANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT 189
++PV+VK RIG D +S+ + +V +H R + A+N
Sbjct: 118 VKAVDIPVTVKIRIGWD--ESHENAVEIARRVEDAGAQ-ALTVHGR-------TRAQNYE 167
Query: 190 IPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPWYTLG 248
P ++ + + + NG I ++ L GA VM+GR A NPW
Sbjct: 168 G-PADWDAIKQVKQAVS-IPVIANGDITDAEDAQRCLSYTGADGVMIGRGALGNPWL-FA 224
Query: 249 HVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
T G + E + + YG ++ +R K L + PG
Sbjct: 225 EQHTVKTGEFDPRPPLAEEAEIVLEHLSYLEEFYGEDK-GLRHARKHLAWYLKGFPGAAE 283
Query: 309 FKRKADAAFQT 319
+R+ + F
Sbjct: 284 LRRELNDVFDP 294
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 from Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria. Length = 309 |
| >gnl|CDD|129820 TIGR00737, nifR3_yhdG, putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 2e-33
Identities = 81/325 (24%), Positives = 141/325 (43%), Gaps = 21/325 (6%)
Query: 14 APMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG 73
APM TD+ +R L EM+++E I+Y R L + ++ PI +Q+ G
Sbjct: 13 APMAGVTDSPFRRLVAEYGA-GLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLFG 71
Query: 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT 133
S+ D +A+A ++ D I++N GCP PK+ G G +L+ DP +G+ + +
Sbjct: 72 SDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGA-GSALLRDPDLIGKIVKAVVDAV 130
Query: 134 NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA--LLNGISPAENRTIP 191
++PV+VK RIG DD N +++ + + +H R +G A I
Sbjct: 131 DIPVTVKIRIGWDD-AHIN--AVEAARIAEDAGAQAVTLHGRTRAQGYSG--EANWDIIA 185
Query: 192 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL-RKGAHHVMVGRAAYQNPWYTLGHV 250
+K +R P + NG I + ++ A L G VM+GR A NPW
Sbjct: 186 RVK-----QAVR-IPVIG---NGDIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFRQIE 236
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
G T + ++ + + YG ++ +R K + + PGN +
Sbjct: 237 QYLTTGKYKPPPTFAEKLDAILRHLQLLADYYGESK-GLRIARKHIAWYLKGFPGNAALR 295
Query: 311 RKADAAFQTCKTVKSFLEETIVAIP 335
+ + A + + VK L++ +
Sbjct: 296 QTLNHA-SSFQEVKQLLDDFFETVG 319
|
This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase [Unknown function, General]. Length = 319 |
| >gnl|CDD|182440 PRK10415, PRK10415, tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (154), Expect = 4e-11
Identities = 61/241 (25%), Positives = 101/241 (41%), Gaps = 19/241 (7%)
Query: 7 LPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHP 66
L APM TD +RTL + +EM+++ +++ + E
Sbjct: 8 LRNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMVHIDEPGI 66
Query: 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 126
+QI GS+ +A A + I++N GCP+ KV G +L+ P V +
Sbjct: 67 RTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKV-NRKLAGSALLQYPDLVKSIL 125
Query: 127 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISP 184
+ + +VPV++K R G ++ C I +++ + IH +R L NG
Sbjct: 126 TEVVNAVDVPVTLKIRTGWAPE---HRNCVEIAQLAEDCGIQALTIHGRTRACLFNG--E 180
Query: 185 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNP 243
AE +I +K + ++ NG I + A L GA +M+GRAA P
Sbjct: 181 AEYDSIRAVKQKVSIPVIA---------NGDITDPLKARAVLDYTGADALMIGRAAQGRP 231
Query: 244 W 244
W
Sbjct: 232 W 232
|
Length = 321 |
| >gnl|CDD|236713 PRK10550, PRK10550, tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 1e-06
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 9/83 (10%)
Query: 77 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFV---GEAMSVIAANT 133
+N A+A EL ++ D LNCGCPS V G G G +L+ DP+ + +AM A
Sbjct: 79 ENAARAVELG-SWGVD---LNCGCPSKTVNGSGG-GATLLKDPELIYQGAKAMRE-AVPA 132
Query: 134 NVPVSVKCRIGVDDHDSYNQLCD 156
++PV+VK R+G D + ++ D
Sbjct: 133 HLPVTVKVRLGWDSGERKFEIAD 155
|
Length = 312 |
| >gnl|CDD|240091 cd04740, DHOD_1B_like, Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 50/189 (26%), Positives = 80/189 (42%), Gaps = 23/189 (12%)
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P++ I GS ++ + E D I LN CP+ K G++ DP+ V E
Sbjct: 91 PVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVK-----GGGMAFGTDPEAVAEI 145
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLC-----DFIYKVSSLSPTRHFI-IHSRKALL 179
+ + T+VPV VK V D + D + +++L I I +RK +L
Sbjct: 146 VKAVKKATDVPVIVKLTPNVTDIVEIARAAEEAGADGLTLINTLKGMA--IDIETRKPIL 203
Query: 180 N----GIS-PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM 234
G+S PA I P+ Y + + ++ GGI + ++ L GA V
Sbjct: 204 GNVTGGLSGPA----IKPIALRMVYQVYKAV-EIPIIGVGGIASGEDALEFLMAGASAVQ 258
Query: 235 VGRAAYQNP 243
VG A + +P
Sbjct: 259 VGTANFVDP 267
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. Length = 296 |
| >gnl|CDD|235982 PRK07259, PRK07259, dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 8e-05
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Query: 66 PIVLQIGGSNLDNLAK-ATELANAYNYDEINLNCGCPSPKVAGHGC--FGVSLMLDPKFV 122
PI+ + GS + A+ A +L+ A N D I LN CP+ HG FG DP+
Sbjct: 93 PIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPN---VKHGGMAFGT----DPELA 145
Query: 123 GEAMSVIAANTNVPVSVKCRIGVDD 147
E + + VPV VK V D
Sbjct: 146 YEVVKAVKEVVKVPVIVKLTPNVTD 170
|
Length = 301 |
| >gnl|CDD|130109 TIGR01037, pyrD_sub1_fam, dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 1e-04
Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 21/189 (11%)
Query: 66 PIVLQIGGSNLDNLAKATE-LANAYNY-DEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 123
P++ + GS+++ A+ E L A Y D LN CP K G +++ DP+
Sbjct: 92 PLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGG-----IAIGQDPELSA 146
Query: 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLC-----DFIYKVSSLSPTRHFIIHSRKAL 178
+ + + T+VPV K V D + D + +++L + I + L
Sbjct: 147 DVVKAVKDKTDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPIL 206
Query: 179 LN---GIS-PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM 234
N G+S PA I P+ Y + + D+ GGI + ++ L GA V
Sbjct: 207 ANKTGGLSGPA----IKPIALRMVYDVYKMV-DIPIIGVGGITSFEDALEFLMAGASAVQ 261
Query: 235 VGRAAYQNP 243
VG A Y
Sbjct: 262 VGTAVYYRG 270
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. Length = 300 |
| >gnl|CDD|239237 cd02911, arch_FMN, Archeal FMN-binding domain | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 41/167 (24%), Positives = 63/167 (37%), Gaps = 24/167 (14%)
Query: 73 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN 132
S+L+ L A L + +N C P++ G G +L+ DP+ + E + +
Sbjct: 81 SSSLEPLLNAAALVAKNA-AILEINAHCRQPEMVEAGA-GEALLKDPERLSEFIKALKE- 137
Query: 133 TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP 192
T VPVSVK R GVD +L I K + IIH + P
Sbjct: 138 TGVPVSVKIRAGVD--VDDEELARLIEKAGAD------IIHV-------------DAMDP 176
Query: 193 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 239
+ + +L N + T++ GA V V RA+
Sbjct: 177 GNHADLKKIRDISTELFIIGNNSVTTIESAKEMFSYGADMVSVARAS 223
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. Length = 233 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 376 | |||
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 100.0 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 100.0 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 100.0 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 100.0 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 100.0 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 100.0 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 100.0 | |
| KOG2335 | 358 | consensus tRNA-dihydrouridine synthase [Translatio | 100.0 | |
| KOG2333 | 614 | consensus Uncharacterized conserved protein [Gener | 100.0 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 100.0 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 100.0 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 100.0 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 100.0 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 100.0 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 100.0 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 100.0 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 100.0 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 100.0 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 100.0 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 100.0 | |
| COG1902 | 363 | NemA NADH:flavin oxidoreductases, Old Yellow Enzym | 100.0 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 100.0 | |
| cd04747 | 361 | OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN | 100.0 | |
| cd02929 | 370 | TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) | 100.0 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 100.0 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 100.0 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 99.97 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 99.97 | |
| PF00724 | 341 | Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox | 99.97 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 99.97 | |
| KOG2334 | 477 | consensus tRNA-dihydrouridine synthase [Translatio | 99.97 | |
| PLN02411 | 391 | 12-oxophytodienoate reductase | 99.97 | |
| PRK10605 | 362 | N-ethylmaleimide reductase; Provisional | 99.97 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 99.97 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 99.96 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 99.96 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 99.95 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 99.95 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 99.94 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 99.93 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 99.91 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 99.91 | |
| PRK02506 | 310 | dihydroorotate dehydrogenase 1A; Reviewed | 99.9 | |
| COG0167 | 310 | PyrD Dihydroorotate dehydrogenase [Nucleotide tran | 99.9 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 99.88 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 99.86 | |
| PF01180 | 295 | DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP | 99.86 | |
| PLN02826 | 409 | dihydroorotate dehydrogenase | 99.84 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 99.79 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 99.78 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 99.77 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 99.7 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 99.7 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 99.67 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 99.65 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 99.63 | |
| PRK04180 | 293 | pyridoxal biosynthesis lyase PdxS; Provisional | 99.6 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 99.59 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 99.59 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 99.58 | |
| PF03060 | 330 | NMO: Nitronate monooxygenase; InterPro: IPR004136 | 99.52 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 99.46 | |
| KOG1436 | 398 | consensus Dihydroorotate dehydrogenase [Nucleotide | 99.44 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 99.44 | |
| PF01070 | 356 | FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR | 99.43 | |
| PLN02535 | 364 | glycolate oxidase | 99.41 | |
| PLN02979 | 366 | glycolate oxidase | 99.4 | |
| PRK11197 | 381 | lldD L-lactate dehydrogenase; Provisional | 99.4 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 99.4 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 99.39 | |
| cd04743 | 320 | NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma | 99.38 | |
| KOG0134 | 400 | consensus NADH:flavin oxidoreductase/12-oxophytodi | 99.38 | |
| cd04742 | 418 | NPD_FabD 2-Nitropropane dioxygenase (NPD)-like dom | 99.37 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 99.35 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 99.32 | |
| cd02808 | 392 | GltS_FMN Glutamate synthase (GltS) FMN-binding dom | 99.3 | |
| COG2070 | 336 | Dioxygenases related to 2-nitropropane dioxygenase | 99.29 | |
| TIGR02814 | 444 | pfaD_fam PfaD family protein. The protein PfaD is | 99.29 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 99.25 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 99.23 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 99.21 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 99.2 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 99.19 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 99.17 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 99.16 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 99.14 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 99.14 | |
| KOG0538 | 363 | consensus Glycolate oxidase [Energy production and | 99.12 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 99.11 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 99.08 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 99.04 | |
| COG1304 | 360 | idi Isopentenyl diphosphate isomerase (BS_ypgA, MT | 99.01 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 98.97 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 98.97 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 98.96 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 98.95 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 98.92 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 98.91 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 98.87 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 98.86 | |
| KOG1799 | 471 | consensus Dihydropyrimidine dehydrogenase [Nucleot | 98.84 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 98.79 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 98.77 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 98.77 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 98.76 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 98.76 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 98.74 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 98.73 | |
| COG0214 | 296 | SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme meta | 98.73 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 98.71 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 98.68 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 98.62 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 98.62 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 98.58 | |
| cd03319 | 316 | L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat | 98.57 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 98.52 | |
| KOG1606 | 296 | consensus Stationary phase-induced protein, SOR/SN | 98.52 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 98.5 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 98.5 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 98.46 | |
| PF05690 | 247 | ThiG: Thiazole biosynthesis protein ThiG; InterPro | 98.42 | |
| PF01645 | 368 | Glu_synthase: Conserved region in glutamate syntha | 98.42 | |
| CHL00162 | 267 | thiG thiamin biosynthesis protein G; Validated | 98.37 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 98.36 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.32 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 98.31 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 98.29 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 98.27 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 98.25 | |
| KOG2550 | 503 | consensus IMP dehydrogenase/GMP reductase [Nucleot | 98.23 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 98.23 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 98.22 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 98.2 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 98.2 | |
| TIGR00259 | 257 | thylakoid_BtpA membrane complex biogenesis protein | 98.18 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.18 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 98.17 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.15 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 98.13 | |
| PLN02591 | 250 | tryptophan synthase | 98.12 | |
| cd03316 | 357 | MR_like Mandelate racemase (MR)-like subfamily of | 98.08 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.07 | |
| PRK00507 | 221 | deoxyribose-phosphate aldolase; Provisional | 98.06 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 98.06 | |
| PF04481 | 242 | DUF561: Protein of unknown function (DUF561); Inte | 98.06 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 98.05 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.04 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 98.04 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 98.02 | |
| COG2022 | 262 | ThiG Uncharacterized enzyme of thiazole biosynthes | 98.02 | |
| PRK07695 | 201 | transcriptional regulator TenI; Provisional | 98.01 | |
| TIGR01949 | 258 | AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep | 98.0 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 97.98 | |
| cd00429 | 211 | RPE Ribulose-5-phosphate 3-epimerase (RPE). This e | 97.98 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 97.97 | |
| TIGR01768 | 223 | GGGP-family geranylgeranylglyceryl phosphate synth | 97.95 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 97.94 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 97.94 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 97.92 | |
| cd03315 | 265 | MLE_like Muconate lactonizing enzyme (MLE) like su | 97.87 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 97.87 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 97.86 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.86 | |
| PTZ00170 | 228 | D-ribulose-5-phosphate 3-epimerase; Provisional | 97.85 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.82 | |
| PRK04169 | 232 | geranylgeranylglyceryl phosphate synthase-like pro | 97.82 | |
| PRK11750 | 1485 | gltB glutamate synthase subunit alpha; Provisional | 97.81 | |
| PRK11840 | 326 | bifunctional sulfur carrier protein/thiazole synth | 97.8 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of | 97.8 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 97.78 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 97.74 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 97.73 | |
| PF03437 | 254 | BtpA: BtpA family; InterPro: IPR005137 Photosystem | 97.72 | |
| TIGR00126 | 211 | deoC deoxyribose-phosphate aldolase. Deoxyribose-p | 97.71 | |
| cd00405 | 203 | PRAI Phosphoribosylanthranilate isomerase (PRAI) c | 97.7 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 97.68 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 97.67 | |
| PRK07226 | 267 | fructose-bisphosphate aldolase; Provisional | 97.67 | |
| PRK08005 | 210 | epimerase; Validated | 97.66 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 97.65 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 97.64 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.64 | |
| PRK13307 | 391 | bifunctional formaldehyde-activating enzyme/3-hexu | 97.63 | |
| PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 97.62 | |
| COG0036 | 220 | Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate | 97.62 | |
| COG0434 | 263 | SgcQ Predicted TIM-barrel enzyme [General function | 97.54 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 97.53 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 97.53 | |
| cd02812 | 219 | PcrB_like PcrB_like proteins. One member of this f | 97.53 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 97.51 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 97.51 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 97.51 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 97.5 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 97.48 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 97.44 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 97.43 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 97.42 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 97.42 | |
| PF01791 | 236 | DeoC: DeoC/LacD family aldolase; InterPro: IPR0029 | 97.4 | |
| PF01884 | 230 | PcrB: PcrB family; InterPro: IPR008205 This entry | 97.39 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.37 | |
| PRK00043 | 212 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 97.37 | |
| COG0069 | 485 | GltB Glutamate synthase domain 2 [Amino acid trans | 97.34 | |
| PLN02460 | 338 | indole-3-glycerol-phosphate synthase | 97.32 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 97.29 | |
| cd00564 | 196 | TMP_TenI Thiamine monophosphate synthase (TMP synt | 97.28 | |
| PRK13802 | 695 | bifunctional indole-3-glycerol phosphate synthase/ | 97.28 | |
| TIGR00693 | 196 | thiE thiamine-phosphate pyrophosphorylase. This mo | 97.27 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 97.27 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 97.26 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 97.26 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 97.2 | |
| PRK07028 | 430 | bifunctional hexulose-6-phosphate synthase/ribonuc | 97.19 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 97.18 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 97.18 | |
| COG0274 | 228 | DeoC Deoxyribose-phosphate aldolase [Nucleotide tr | 97.17 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 97.16 | |
| COG0269 | 217 | SgbH 3-hexulose-6-phosphate synthase and related p | 97.15 | |
| PF00834 | 201 | Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam | 97.12 | |
| COG0134 | 254 | TrpC Indole-3-glycerol phosphate synthase [Amino a | 97.09 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 97.09 | |
| PRK07315 | 293 | fructose-bisphosphate aldolase; Provisional | 97.08 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 97.08 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.04 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 97.03 | |
| COG0352 | 211 | ThiE Thiamine monophosphate synthase [Coenzyme met | 97.02 | |
| COG1646 | 240 | Predicted phosphate-binding enzymes, TIM-barrel fo | 97.01 | |
| PF01680 | 208 | SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p | 96.99 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 96.97 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 96.96 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 96.96 | |
| PRK05283 | 257 | deoxyribose-phosphate aldolase; Provisional | 96.95 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 96.91 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 96.83 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 96.82 | |
| PRK02615 | 347 | thiamine-phosphate pyrophosphorylase; Provisional | 96.8 | |
| PRK05848 | 273 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.77 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 96.76 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 96.76 | |
| PRK04302 | 223 | triosephosphate isomerase; Provisional | 96.76 | |
| PRK03512 | 211 | thiamine-phosphate pyrophosphorylase; Provisional | 96.7 | |
| TIGR02321 | 290 | Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f | 96.68 | |
| PRK07428 | 288 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.67 | |
| KOG2550 | 503 | consensus IMP dehydrogenase/GMP reductase [Nucleot | 96.67 | |
| PRK06512 | 221 | thiamine-phosphate pyrophosphorylase; Provisional | 96.64 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 96.62 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 96.62 | |
| PF02581 | 180 | TMP-TENI: Thiamine monophosphate synthase/TENI; In | 96.61 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 96.59 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 96.51 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 96.48 | |
| cd03329 | 368 | MR_like_4 Mandelate racemase (MR)-like subfamily o | 96.47 | |
| PRK06852 | 304 | aldolase; Validated | 96.47 | |
| PRK08227 | 264 | autoinducer 2 aldolase; Validated | 96.46 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 96.38 | |
| PRK09722 | 229 | allulose-6-phosphate 3-epimerase; Provisional | 96.37 | |
| PRK14057 | 254 | epimerase; Provisional | 96.32 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 96.31 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 96.3 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 96.29 | |
| PRK01222 | 210 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 96.23 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 96.21 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 96.18 | |
| PRK00311 | 264 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 96.18 | |
| PLN02424 | 332 | ketopantoate hydroxymethyltransferase | 96.17 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 96.15 | |
| PLN02424 | 332 | ketopantoate hydroxymethyltransferase | 96.11 | |
| COG2513 | 289 | PrpB PEP phosphonomutase and related enzymes [Carb | 96.09 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 96.05 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 96.0 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 95.96 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 95.95 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 95.92 | |
| PRK00230 | 230 | orotidine 5'-phosphate decarboxylase; Reviewed | 95.91 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 95.89 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 95.87 | |
| TIGR00222 | 263 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 95.86 | |
| cd01568 | 269 | QPRTase_NadC Quinolinate phosphoribosyl transferas | 95.84 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 95.82 | |
| TIGR02321 | 290 | Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f | 95.82 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 95.81 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 95.81 | |
| TIGR00222 | 263 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 95.79 | |
| PRK00311 | 264 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 95.79 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 95.78 | |
| TIGR01361 | 260 | DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate | 95.77 | |
| PRK13813 | 215 | orotidine 5'-phosphate decarboxylase; Provisional | 95.72 | |
| KOG2334 | 477 | consensus tRNA-dihydrouridine synthase [Translatio | 95.69 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 95.64 | |
| PRK12290 | 437 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 95.63 | |
| PRK02227 | 238 | hypothetical protein; Provisional | 95.62 | |
| PRK08999 | 312 | hypothetical protein; Provisional | 95.6 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 95.6 | |
| cd03321 | 355 | mandelate_racemase Mandelate racemase (MR) catalyz | 95.53 | |
| PRK08072 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 95.5 | |
| cd01572 | 268 | QPRTase Quinolinate phosphoribosyl transferase (QA | 95.5 | |
| PF09370 | 268 | TIM-br_sig_trns: TIM-barrel signal transduction pr | 95.49 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 95.41 | |
| TIGR00078 | 265 | nadC nicotinate-nucleotide pyrophosphorylase. Syno | 95.41 | |
| COG1830 | 265 | FbaB DhnA-type fructose-1,6-bisphosphate aldolase | 95.38 | |
| COG2513 | 289 | PrpB PEP phosphonomutase and related enzymes [Carb | 95.37 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 95.35 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 95.28 | |
| PRK09250 | 348 | fructose-bisphosphate aldolase; Provisional | 95.25 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 95.24 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 95.22 | |
| PRK08610 | 286 | fructose-bisphosphate aldolase; Reviewed | 95.2 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 95.19 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 95.18 | |
| PRK12858 | 340 | tagatose 1,6-diphosphate aldolase; Reviewed | 95.18 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 95.16 | |
| cd00947 | 276 | TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a | 95.14 | |
| COG4948 | 372 | L-alanine-DL-glutamate epimerase and related enzym | 95.08 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 95.08 | |
| PRK04147 | 293 | N-acetylneuraminate lyase; Provisional | 95.06 | |
| PF04476 | 235 | DUF556: Protein of unknown function (DUF556); Inte | 95.04 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 95.01 | |
| PRK09196 | 347 | fructose-1,6-bisphosphate aldolase; Reviewed | 94.96 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 94.93 | |
| TIGR00167 | 288 | cbbA ketose-bisphosphate aldolases. fructose-bisph | 94.92 | |
| PRK05742 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 94.91 | |
| cd03325 | 352 | D-galactonate_dehydratase D-galactonate dehydratas | 94.91 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 94.91 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 94.9 | |
| PRK08673 | 335 | 3-deoxy-7-phosphoheptulonate synthase; Reviewed | 94.84 | |
| cd01573 | 272 | modD_like ModD; Quinolinate phosphoribosyl transfe | 94.84 | |
| PRK09517 | 755 | multifunctional thiamine-phosphate pyrophosphoryla | 94.83 | |
| PRK08385 | 278 | nicotinate-nucleotide pyrophosphorylase; Provision | 94.81 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 94.8 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 94.79 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 94.76 | |
| cd03324 | 415 | rTSbeta_L-fuconate_dehydratase Human rTS beta is e | 94.73 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 94.7 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 94.63 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 94.61 | |
| PF01729 | 169 | QRPTase_C: Quinolinate phosphoribosyl transferase, | 94.55 | |
| PRK14017 | 382 | galactonate dehydratase; Provisional | 94.44 | |
| cd08210 | 364 | RLP_RrRLP Ribulose bisphosphate carboxylase like p | 94.43 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 94.36 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 94.36 | |
| PRK13397 | 250 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 94.33 | |
| cd03326 | 385 | MR_like_1 Mandelate racemase (MR)-like subfamily o | 94.29 | |
| KOG3111 | 224 | consensus D-ribulose-5-phosphate 3-epimerase [Carb | 94.27 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 94.19 | |
| PRK13396 | 352 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 94.19 | |
| PF02548 | 261 | Pantoate_transf: Ketopantoate hydroxymethyltransfe | 94.16 | |
| PRK12595 | 360 | bifunctional 3-deoxy-7-phosphoheptulonate synthase | 94.07 | |
| PRK13398 | 266 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 94.06 | |
| PRK07084 | 321 | fructose-bisphosphate aldolase; Provisional | 94.01 | |
| COG0135 | 208 | TrpF Phosphoribosylanthranilate isomerase [Amino a | 93.93 | |
| PRK12857 | 284 | fructose-1,6-bisphosphate aldolase; Reviewed | 93.92 | |
| PRK07896 | 289 | nicotinate-nucleotide pyrophosphorylase; Provision | 93.92 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 93.92 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 93.89 | |
| PLN02898 | 502 | HMP-P kinase/thiamin-monophosphate pyrophosphoryla | 93.88 | |
| TIGR01334 | 277 | modD putative molybdenum utilization protein ModD. | 93.86 | |
| PRK05835 | 307 | fructose-bisphosphate aldolase; Provisional | 93.83 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called | 93.76 | |
| PF01116 | 287 | F_bP_aldolase: Fructose-bisphosphate aldolase clas | 93.74 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 93.62 | |
| cd03328 | 352 | MR_like_3 Mandelate racemase (MR)-like subfamily o | 93.59 | |
| PRK15452 | 443 | putative protease; Provisional | 93.58 | |
| cd00952 | 309 | CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate | 93.58 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 93.36 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 93.3 | |
| PRK13306 | 216 | ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; | 93.3 | |
| TIGR01521 | 347 | FruBisAldo_II_B fructose-bisphosphate aldolase, cl | 93.29 | |
| TIGR02534 | 368 | mucon_cyclo muconate and chloromuconate cycloisome | 93.22 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 93.1 | |
| PRK13399 | 347 | fructose-1,6-bisphosphate aldolase; Provisional | 93.09 | |
| TIGR01928 | 324 | menC_lowGC/arch o-succinylbenzoic acid (OSB) synth | 93.09 | |
| cd03317 | 354 | NAAAR N-acylamino acid racemase (NAAAR), an octame | 93.02 | |
| cd03322 | 361 | rpsA The starvation sensing protein RpsA from E.co | 92.94 | |
| cd00739 | 257 | DHPS DHPS subgroup of Pterin binding enzymes. DHPS | 92.92 | |
| PRK06106 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 92.92 | |
| cd03318 | 365 | MLE Muconate Lactonizing Enzyme (MLE), an homoocta | 92.91 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 92.9 | |
| cd03327 | 341 | MR_like_2 Mandelate racemase (MR)-like subfamily o | 92.86 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 92.86 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 92.82 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 92.78 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 92.62 | |
| PRK06559 | 290 | nicotinate-nucleotide pyrophosphorylase; Provision | 92.61 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 92.54 | |
| cd04725 | 216 | OMP_decarboxylase_like Orotidine 5'-phosphate deca | 92.51 | |
| cd00956 | 211 | Transaldolase_FSA Transaldolase-like fructose-6-ph | 92.47 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 92.43 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 92.42 | |
| cd04743 | 320 | NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma | 92.4 | |
| PRK06256 | 336 | biotin synthase; Validated | 92.39 | |
| TIGR03569 | 329 | NeuB_NnaB N-acetylneuraminate synthase. This famil | 92.15 | |
| PRK06543 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 92.02 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called | 92.01 | |
| PRK06978 | 294 | nicotinate-nucleotide pyrophosphorylase; Provision | 92.01 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 92.01 | |
| PRK09016 | 296 | quinolinate phosphoribosyltransferase; Validated | 92.0 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 91.97 | |
| COG0149 | 251 | TpiA Triosephosphate isomerase [Carbohydrate trans | 91.97 | |
| PRK15072 | 404 | bifunctional D-altronate/D-mannonate dehydratase; | 91.94 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 91.89 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 91.87 | |
| TIGR00683 | 290 | nanA N-acetylneuraminate lyase. N-acetylneuraminat | 91.86 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 91.83 | |
| cd03320 | 263 | OSBS o-Succinylbenzoate synthase (OSBS) catalyzes | 91.82 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 91.81 | |
| PRK11572 | 248 | copper homeostasis protein CutC; Provisional | 91.75 | |
| cd00003 | 234 | PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase | 91.66 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 91.64 | |
| PF03932 | 201 | CutC: CutC family; InterPro: IPR005627 Copper tran | 91.6 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 91.51 | |
| PRK05265 | 239 | pyridoxine 5'-phosphate synthase; Provisional | 91.45 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 91.35 | |
| PF00697 | 197 | PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isome | 91.16 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 91.1 | |
| TIGR00683 | 290 | nanA N-acetylneuraminate lyase. N-acetylneuraminat | 90.9 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 90.89 | |
| cd03323 | 395 | D-glucarate_dehydratase D-Glucarate dehydratase (G | 90.86 | |
| TIGR03586 | 327 | PseI pseudaminic acid synthase. | 90.77 | |
| PRK13958 | 207 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 90.76 | |
| PRK02412 | 253 | aroD 3-dehydroquinate dehydratase; Provisional | 90.72 | |
| PRK06096 | 284 | molybdenum transport protein ModD; Provisional | 90.65 | |
| PRK02714 | 320 | O-succinylbenzoate synthase; Provisional | 90.6 | |
| cd08208 | 424 | RLP_Photo Ribulose bisphosphate carboxylase like p | 90.59 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 90.58 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 90.54 | |
| PRK01060 | 281 | endonuclease IV; Provisional | 90.48 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 90.46 | |
| PRK11572 | 248 | copper homeostasis protein CutC; Provisional | 90.43 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 90.36 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 90.36 | |
| COG0413 | 268 | PanB Ketopantoate hydroxymethyltransferase [Coenzy | 90.25 | |
| TIGR03849 | 237 | arch_ComA phosphosulfolactate synthase. This model | 90.23 | |
| PF04309 | 175 | G3P_antiterm: Glycerol-3-phosphate responsive anti | 90.22 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 90.16 | |
| cd08210 | 364 | RLP_RrRLP Ribulose bisphosphate carboxylase like p | 90.14 | |
| PLN02389 | 379 | biotin synthase | 90.06 | |
| COG0284 | 240 | PyrF Orotidine-5'-phosphate decarboxylase [Nucleot | 90.04 | |
| TIGR00559 | 237 | pdxJ pyridoxine 5'-phosphate synthase. PdxJ is req | 89.98 | |
| COG2876 | 286 | AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate ( | 89.85 | |
| TIGR00433 | 296 | bioB biotin synthetase. Catalyzes the last step of | 89.73 | |
| COG4981 | 717 | Enoyl reductase domain of yeast-type FAS1 [Lipid m | 89.7 | |
| TIGR03332 | 407 | salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosp | 89.63 | |
| cd08213 | 412 | RuBisCO_large_III Ribulose bisphosphate carboxylas | 89.61 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 89.54 | |
| PRK01261 | 229 | aroD 3-dehydroquinate dehydratase; Provisional | 89.52 | |
| PF03932 | 201 | CutC: CutC family; InterPro: IPR005627 Copper tran | 89.49 | |
| PLN02535 | 364 | glycolate oxidase | 89.47 | |
| cd08209 | 391 | RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopent | 89.44 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 89.4 | |
| COG5016 | 472 | Pyruvate/oxaloacetate carboxyltransferase [Energy | 89.35 | |
| PF00809 | 210 | Pterin_bind: Pterin binding enzyme This Prosite en | 89.23 | |
| cd08207 | 406 | RLP_NonPhot Ribulose bisphosphate carboxylase like | 89.17 | |
| PLN02460 | 338 | indole-3-glycerol-phosphate synthase | 89.15 | |
| PRK07094 | 323 | biotin synthase; Provisional | 89.01 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 89.0 | |
| PRK09549 | 407 | mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate eno | 88.99 | |
| COG0157 | 280 | NadC Nicotinate-nucleotide pyrophosphorylase [Coen | 88.96 | |
| PRK11613 | 282 | folP dihydropteroate synthase; Provisional | 88.73 | |
| PRK01222 | 210 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 88.51 | |
| cd08148 | 366 | RuBisCO_large Ribulose bisphosphate carboxylase la | 88.51 | |
| cd08207 | 406 | RLP_NonPhot Ribulose bisphosphate carboxylase like | 88.37 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 88.31 | |
| cd08205 | 367 | RuBisCO_IV_RLP Ribulose bisphosphate carboxylase l | 88.16 | |
| PLN02716 | 308 | nicotinate-nucleotide diphosphorylase (carboxylati | 88.14 | |
| COG1411 | 229 | Uncharacterized protein related to proFAR isomeras | 88.12 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 88.04 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 87.85 | |
| PF01487 | 224 | DHquinase_I: Type I 3-dehydroquinase; InterPro: IP | 87.81 | |
| cd08205 | 367 | RuBisCO_IV_RLP Ribulose bisphosphate carboxylase l | 87.79 | |
| COG1954 | 181 | GlpP Glycerol-3-phosphate responsive antiterminato | 87.78 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 87.72 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 87.71 | |
| PTZ00333 | 255 | triosephosphate isomerase; Provisional | 87.7 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 87.68 | |
| PF02548 | 261 | Pantoate_transf: Ketopantoate hydroxymethyltransfe | 87.52 | |
| TIGR03326 | 412 | rubisco_III ribulose bisphosphate carboxylase, typ | 87.45 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 87.42 | |
| cd00423 | 258 | Pterin_binding Pterin binding enzymes. This family | 87.35 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 87.28 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 87.22 | |
| TIGR00284 | 499 | dihydropteroate synthase-related protein. This pro | 87.18 | |
| KOG4201 | 289 | consensus Anthranilate synthase component II [Amin | 87.18 | |
| TIGR01740 | 213 | pyrF orotidine 5'-phosphate decarboxylase, subfami | 87.17 | |
| cd00405 | 203 | PRAI Phosphoribosylanthranilate isomerase (PRAI) c | 87.16 | |
| cd08209 | 391 | RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopent | 87.06 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 87.01 | |
| PRK04452 | 319 | acetyl-CoA decarbonylase/synthase complex subunit | 86.91 | |
| cd08206 | 414 | RuBisCO_large_I_II_III Ribulose bisphosphate carbo | 86.82 | |
| PLN02561 | 253 | triosephosphate isomerase | 86.8 | |
| PRK12656 | 222 | fructose-6-phosphate aldolase; Reviewed | 86.74 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 86.71 | |
| cd08212 | 450 | RuBisCO_large_I Ribulose bisphosphate carboxylase | 86.6 | |
| COG0134 | 254 | TrpC Indole-3-glycerol phosphate synthase [Amino a | 86.5 | |
| TIGR03586 | 327 | PseI pseudaminic acid synthase. | 86.48 | |
| CHL00040 | 475 | rbcL ribulose-1,5-bisphosphate carboxylase/oxygena | 86.38 | |
| TIGR03247 | 441 | glucar-dehydr glucarate dehydratase. Glucarate deh | 86.37 | |
| TIGR01927 | 307 | menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthe | 86.3 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 86.15 | |
| PRK07535 | 261 | methyltetrahydrofolate:corrinoid/iron-sulfur prote | 86.14 | |
| PRK12457 | 281 | 2-dehydro-3-deoxyphosphooctonate aldolase; Provisi | 86.14 |
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-65 Score=490.08 Aligned_cols=318 Identities=42% Similarity=0.758 Sum_probs=274.9
Q ss_pred CcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHHHHHHHHH
Q 017176 9 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANA 88 (376)
Q Consensus 9 nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~aa~~~~~ 88 (376)
+++++|||+|+||.+||.+|+.+|+.+++||||++++++.+...+ .++..++.+.|+++||+|++|+.|++||+++++
T Consensus 1 ~~~~lAPM~g~Td~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~--~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~ 78 (318)
T TIGR00742 1 GRFSVAPMLDWTDRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKK--DILKFSPEESPVALQLGGSDPNDLAKCAKIAEK 78 (318)
T ss_pred CCEEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHH--HHcccCCCCCcEEEEEccCCHHHHHHHHHHHHh
Confidence 479999999999999999999998669999999999999876544 577788999999999999999999999999999
Q ss_pred CCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCcc
Q 017176 89 YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTR 168 (376)
Q Consensus 89 ~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd 168 (376)
+|||+||||||||++++.+ ++||++|+++|+++.+||+++++++++||+||+|+||++.+++++++++ .+.++++|++
T Consensus 79 ~g~d~IDlN~GCP~~~v~~-~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~-~~~l~~~G~~ 156 (318)
T TIGR00742 79 RGYDEINLNVGCPSDRVQN-GNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDF-VEIVSGKGCQ 156 (318)
T ss_pred CCCCEEEEECCCCHHHhCC-CCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHH-HHHHHHcCCC
Confidence 9999999999999998764 6689999999999999999999999999999999999876556666654 4566789999
Q ss_pred EEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchhhH
Q 017176 169 HFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLG 248 (376)
Q Consensus 169 ~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~ 248 (376)
+|+||+||...+|+++..++.+++.+|+.++++++.++++|||+||||.|++|+.+++. |||+||||||++.|||+| .
T Consensus 157 ~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~dgVMigRgal~nP~if-~ 234 (318)
T TIGR00742 157 NFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVDGVMVGREAYENPYLL-A 234 (318)
T ss_pred EEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCCEEEECHHHHhCCHHH-H
Confidence 99999999755677766666778888999999988877899999999999999999996 899999999999999997 5
Q ss_pred hhhhhhhCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCCCChHHHHHHHHHHhhhhhHHHHHH
Q 017176 249 HVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLE 328 (376)
Q Consensus 249 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 328 (376)
+++..+.+.+.+..++.++++.|.+|.+.+.++ ..+++.+|||+.||++|+|++++||+++++...+..+..++|+
T Consensus 235 ~~~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~----~~~~~~~rk~~~~y~~g~~~~~~~r~~~~~~~~~~~~~~~~~~ 310 (318)
T TIGR00742 235 NVDREIFNETDEILTRKEIVEQMLPYIEEYLSQ----GLSLNHITRHLLGLFQGKPGAKQWRRYLSENAPKAGAGIEVLE 310 (318)
T ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHc----cchHHHHHHHHHHHHccCCCHHHHHHHHHhcccCCCCcHHHHH
Confidence 566555543333467778888888888765443 3578999999999999999999999999876655567889999
Q ss_pred HHHHhCCC
Q 017176 329 ETIVAIPD 336 (376)
Q Consensus 329 ~~~~~~~~ 336 (376)
+++..+++
T Consensus 311 ~~~~~~~~ 318 (318)
T TIGR00742 311 TALETVPE 318 (318)
T ss_pred HHHHhccC
Confidence 98877653
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-63 Score=480.23 Aligned_cols=313 Identities=29% Similarity=0.481 Sum_probs=266.3
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHH
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAK 81 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~ 81 (376)
++.+.+++++++|||+|+||.+||++++++|+.+++||||+++++++++.++....+...+.+.|+++||+|++|+.+++
T Consensus 4 ~~~~~~~~~~~lAPM~gvtd~~fR~l~~~~ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~gsdp~~l~e 83 (323)
T COG0042 4 IGLIELRNRVILAPMAGVTDLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLGGSDPELLAE 83 (323)
T ss_pred cccccccCcEEEecCCCCccHHHHHHHHHhCCCceEEEccEEEhhhccCCcchhhhcCcCCCCCCEEEEecCCCHHHHHH
Confidence 56788999999999999999999999999984499999999999999987766665555577899999999999999999
Q ss_pred HHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC-ccEEEEecCCCCCCccHHHHHHHHHH
Q 017176 82 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDFIYK 160 (376)
Q Consensus 82 aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~-~pv~vKiR~g~~~~~~~~~~~~~i~~ 160 (376)
||+.+.+.|+|+||||||||++++++.+. |++||++|+++.+||++++++++ +|||||+|+||++.+. ....+++
T Consensus 84 aA~~~~~~g~~~IdlN~GCP~~~V~~~g~-Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~---~~~~ia~ 159 (323)
T COG0042 84 AAKIAEELGADIIDLNCGCPSPKVVKGGA-GAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDI---LALEIAR 159 (323)
T ss_pred HHHHHHhcCCCEEeeeCCCChHHhcCCCc-chhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccc---cHHHHHH
Confidence 99999999999999999999999988765 99999999999999999999995 9999999999988541 1223567
Q ss_pred HhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHH
Q 017176 161 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAA 239 (376)
Q Consensus 161 ~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~ 239 (376)
+++++|+++|+|||||+.+.+.++ .+|++|+++++.++++|||+||||.|++|+.++++ +|||+||+|||+
T Consensus 160 ~~~~~g~~~ltVHgRtr~~~y~~~--------ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga 231 (323)
T COG0042 160 ILEDAGADALTVHGRTRAQGYLGP--------ADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGA 231 (323)
T ss_pred HHHhcCCCEEEEecccHHhcCCCc--------cCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHH
Confidence 778999999999999987776543 45999999999875699999999999999999999 899999999999
Q ss_pred hhCCchhhHhhhhhhhCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCCCChHHHHHHHHHHhh
Q 017176 240 YQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQT 319 (376)
Q Consensus 240 l~~P~lf~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y~~~~~~~~~~r~~~~~~~~~ 319 (376)
+.|||+| ++++....|...+ .++.++++.+..|.+.+.++++ ..+++.+|||+.||+++++++++||+.+++ +.+
T Consensus 232 ~~nP~l~-~~i~~~~~g~~~~-~~~~e~~~~~~~~~~~~~~~~~--~~~~~~~r~h~~~~~~~~~~a~~~r~~~~~-~~~ 306 (323)
T COG0042 232 LGNPWLF-RQIDYLETGELLP-PTLAEVLDILREHLELLLEYYG--KKGLRRLRKHLGYYLKGLPGARELRRALNK-AED 306 (323)
T ss_pred ccCCcHH-HHHHHhhcCCCCC-CCHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHhhcCccHHHHHHHHhc-cCc
Confidence 9999997 4443333444322 6777888888888888888888 578999999999999999999999998633 244
Q ss_pred hhhHHHHHHHHH
Q 017176 320 CKTVKSFLEETI 331 (376)
Q Consensus 320 ~~~~~~~~~~~~ 331 (376)
..++.+.++.+.
T Consensus 307 ~~~~~~~l~~~~ 318 (323)
T COG0042 307 GAEVRRALEAVF 318 (323)
T ss_pred HHHHHHHHHHHH
Confidence 444445444433
|
|
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-62 Score=473.83 Aligned_cols=324 Identities=43% Similarity=0.793 Sum_probs=281.3
Q ss_pred ecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHHHHHH
Q 017176 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATEL 85 (376)
Q Consensus 6 ~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~aa~~ 85 (376)
..+++++||||+|+||.+||.+|+.+|+.+++||||++++++.+.. ...++..++.+.|+++||+|++|+.|++||++
T Consensus 8 ~~~~~~~lAPM~g~td~~fR~~~~~~g~~~~~~temv~~~~l~~~~--~~~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~ 85 (333)
T PRK11815 8 LPSRRFSVAPMMDWTDRHCRYFHRLLSRHALLYTEMVTTGAIIHGD--RERLLAFDPEEHPVALQLGGSDPADLAEAAKL 85 (333)
T ss_pred CCCCCEEEeCCCCCcCHHHHHHHHHhCCCCEEEECCEEeccccccC--HHHHhccCCCCCcEEEEEeCCCHHHHHHHHHH
Confidence 4567999999999999999999999987799999999999998865 46677788899999999999999999999999
Q ss_pred HHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcC
Q 017176 86 ANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLS 165 (376)
Q Consensus 86 ~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~ 165 (376)
++++|||+||||+|||++++ ++++||++|++||+++.+|++++++.+++||+||+|+|+++..+.+++.++ .+.++++
T Consensus 86 ~~~~g~d~IdlN~gCP~~~v-~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~-~~~l~~a 163 (333)
T PRK11815 86 AEDWGYDEINLNVGCPSDRV-QNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDF-VDTVAEA 163 (333)
T ss_pred HHhcCCCEEEEcCCCCHHHc-cCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHH-HHHHHHh
Confidence 99999999999999999875 567899999999999999999999999999999999999876555566654 4456789
Q ss_pred CccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 166 PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 166 Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
|+|+|+||+|+...+|.++..+..+++.+|+.++++++.++++|||+||||.|++|+.++++ +||+||||||++.|||+
T Consensus 164 G~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~nP~~ 242 (333)
T PRK11815 164 GCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYHNPYL 242 (333)
T ss_pred CCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHhCCHH
Confidence 99999999998755666666667788899999999888767899999999999999999998 69999999999999999
Q ss_pred hhHhhhhhhhCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCCCChHHHHHHHHHHhh-hhhHH
Q 017176 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQT-CKTVK 324 (376)
Q Consensus 246 f~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y~~~~~~~~~~r~~~~~~~~~-~~~~~ 324 (376)
| +++...+.|.+.+..++.++++.|.+|.+.+.+ +|+ +++.+|||+.||++++|++++||+++++...+ +.++
T Consensus 243 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~rk~~~~y~~~~~~~~~~r~~~~~~~~~~~~~~- 316 (333)
T PRK11815 243 L-AEVDRELFGEPAPPLSRSEVLEAMLPYIERHLA-QGG---RLNHITRHMLGLFQGLPGARAWRRYLSENAHKPGAGI- 316 (333)
T ss_pred H-HHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHH-cCc---hHHHHHHHHHHHHcCCCCHHHHHHHHHhhcccCCCCH-
Confidence 6 556655566554456788999999999988776 354 58999999999999999999999999776433 4566
Q ss_pred HHHHHHHHhCCCCCCC
Q 017176 325 SFLEETIVAIPDSVLD 340 (376)
Q Consensus 325 ~~~~~~~~~~~~~~~~ 340 (376)
++|++.+..+++..+.
T Consensus 317 ~~~~~~~~~~~~~~~~ 332 (333)
T PRK11815 317 EVLEEALALVEEAALE 332 (333)
T ss_pred HHHHHHHHhhhhhhcc
Confidence 9999999888876654
|
|
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-61 Score=464.73 Aligned_cols=314 Identities=22% Similarity=0.303 Sum_probs=263.4
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHH
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAK 81 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~ 81 (376)
||++.+++++++|||+|+||.+||.+|+++| +++++|||++++++..........+...+++.|+++||+|++|+.|++
T Consensus 3 i~~~~~~~~~~lAPM~g~td~~fR~l~~~~g-~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~g~~~~~~~~ 81 (321)
T PRK10415 3 IGQYQLRNRLIAAPMAGITDRPFRTLCYEMG-AGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMAD 81 (321)
T ss_pred cCCccCCCCEEecCCCCCCcHHHHHHHHHHC-CCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEeCCCHHHHHH
Confidence 7899999999999999999999999999997 699999999999876655444444444566789999999999999999
Q ss_pred HHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHH
Q 017176 82 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKV 161 (376)
Q Consensus 82 aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~ 161 (376)
+|+++++.|+|+||||||||++++.+.+. |++|+++|+++.++++++++.+++||++|+|.||++.. .+..+ +++.
T Consensus 82 aa~~~~~~g~d~IdlN~gCP~~~v~~~g~-Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~--~~~~~-~a~~ 157 (321)
T PRK10415 82 AARINVESGAQIIDINMGCPAKKVNRKLA-GSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEH--RNCVE-IAQL 157 (321)
T ss_pred HHHHHHHCCCCEEEEeCCCCHHHHcCCCc-ccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCc--chHHH-HHHH
Confidence 99999999999999999999999888775 99999999999999999999999999999999998632 12233 2445
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHh
Q 017176 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAY 240 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l 240 (376)
++++|+|+|+||+|+......+ +.+|+.++++++.. ++|||+||||.|++|++++++ +|||+||+|||++
T Consensus 158 le~~G~d~i~vh~rt~~~~~~G--------~a~~~~i~~ik~~~-~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l 228 (321)
T PRK10415 158 AEDCGIQALTIHGRTRACLFNG--------EAEYDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQ 228 (321)
T ss_pred HHHhCCCEEEEecCccccccCC--------CcChHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhh
Confidence 6789999999999985322111 23488888988764 899999999999999999998 8999999999999
Q ss_pred hCCchhhHhhhhhh-hCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCCCChHHHHHHHHHHhh
Q 017176 241 QNPWYTLGHVDTAI-YGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQT 319 (376)
Q Consensus 241 ~~P~lf~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y~~~~~~~~~~r~~~~~~~~~ 319 (376)
.|||+| +++.... .|+..+..++.++++.+.+|.+.+.++||+ +.+++.+|||+.||++++|++++||+++++ +++
T Consensus 229 ~nP~if-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~rk~~~~y~~~~~~~~~~r~~~~~-~~~ 305 (321)
T PRK10415 229 GRPWIF-REIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGP-AKGYRIARKHVSWYLQEHAPNDQFRRTFNA-IED 305 (321)
T ss_pred cCChHH-HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHCh-HHHHHHHHHHHHHHHhcCCchHHHHHHHHc-CCC
Confidence 999997 5555433 355444456778888888888888888887 679999999999999999999999998854 367
Q ss_pred hhhHHHHHHHHHH
Q 017176 320 CKTVKSFLEETIV 332 (376)
Q Consensus 320 ~~~~~~~~~~~~~ 332 (376)
..++.+++++++.
T Consensus 306 ~~~~~~~~~~~~~ 318 (321)
T PRK10415 306 ASEQLEALEAYFE 318 (321)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777654
|
|
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-61 Score=460.87 Aligned_cols=297 Identities=21% Similarity=0.263 Sum_probs=240.3
Q ss_pred cEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhh---hhhc---cCCCCCCEEEEecCCCHHHHHHHH
Q 017176 10 WFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLD---RFLA---FSPEQHPIVLQIGGSNLDNLAKAT 83 (376)
Q Consensus 10 ri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~---~~~~---~~~~~~p~~vQL~g~~~~~~~~aa 83 (376)
+++||||+|+||.+||.+|+++||++++||||++++++....+.+. ..+. .++++.|+++||+|++|+.|++||
T Consensus 2 ~~~lAPMag~td~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~g~~p~~~~~aA 81 (312)
T PRK10550 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLLGQYPQWLAENA 81 (312)
T ss_pred CeEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEeccCCHHHHHHHH
Confidence 5899999999999999999999889999999999998877654442 2222 567789999999999999999999
Q ss_pred HHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHHHHHHHHHHH
Q 017176 84 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKV 161 (376)
Q Consensus 84 ~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~~~~~~i~~~ 161 (376)
+++++.|||+||||||||++++++.|. |++|+++|+++.+|+++|++.+ ++||+||+|+||++.+...+ ++++
T Consensus 82 ~~~~~~g~d~IdiN~GCP~~~v~~~g~-Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~----~a~~ 156 (312)
T PRK10550 82 ARAVELGSWGVDLNCGCPSKTVNGSGG-GATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFE----IADA 156 (312)
T ss_pred HHHHHcCCCEEEEeCCCCchHHhcCCC-chHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHH----HHHH
Confidence 999999999999999999999887765 9999999999999999999988 49999999999976443333 3556
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHh
Q 017176 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAY 240 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l 240 (376)
++++|+|+|+||+|+..+ ++++ ++.+|+.++++++.. ++|||+||||.|++|+.++++ +|||+||||||++
T Consensus 157 l~~~Gvd~i~Vh~Rt~~~-~y~g------~~~~~~~i~~ik~~~-~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l 228 (312)
T PRK10550 157 VQQAGATELVVHGRTKED-GYRA------EHINWQAIGEIRQRL-TIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGAL 228 (312)
T ss_pred HHhcCCCEEEECCCCCcc-CCCC------CcccHHHHHHHHhhc-CCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhH
Confidence 788999999999999643 2221 233688999988764 899999999999999999998 9999999999999
Q ss_pred hCCchhhHhhhhhhhCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCCCChHHHHHHHHHHhhh
Q 017176 241 QNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTC 320 (376)
Q Consensus 241 ~~P~lf~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y~~~~~~~~~~r~~~~~~~~~~ 320 (376)
+||||| ++++. |.+ .+++.++++.+.+|.+...+.+++ ..++.+||||+.||+++++++++||+++++. ++.
T Consensus 229 ~nP~lf-~~~~~---g~~--~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~rk~~~~y~~~~~~~~~~r~~i~~~-~~~ 300 (312)
T PRK10550 229 NIPNLS-RVVKY---NEP--RMPWPEVVALLQKYTRLEKQGDTG-LYHVARIKQWLGYLRKEYDEATELFQEIRAL-NNS 300 (312)
T ss_pred hCcHHH-HHhhc---CCC--CCCHHHHHHHHHHHHHHHHhcCcc-hhHHHHHHHHHHHHHhcCCcHHHHHHHHHcC-CCH
Confidence 999997 45543 432 234556655555565543444443 5678999999999999999999999887432 444
Q ss_pred hhHHHHH
Q 017176 321 KTVKSFL 327 (376)
Q Consensus 321 ~~~~~~~ 327 (376)
.++.+++
T Consensus 301 ~e~~~~~ 307 (312)
T PRK10550 301 PDIARAI 307 (312)
T ss_pred HHHHHHH
Confidence 4444433
|
|
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-60 Score=457.05 Aligned_cols=301 Identities=29% Similarity=0.482 Sum_probs=221.5
Q ss_pred EEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHHHHHHHHHCCC
Q 017176 12 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNY 91 (376)
Q Consensus 12 ~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~ 91 (376)
+||||+++||.+||.+++.+|+.+++||||++++.+.+..+.....+...+++.|+++||+|++|+.+++||+++.+.|+
T Consensus 1 ~LAPM~g~td~~fR~l~~~~g~~~~~~temi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~~~ 80 (309)
T PF01207_consen 1 ILAPMAGVTDLPFRRLCREFGADDLTYTEMISAKAILRSNKKTIRLLPFLPNERPLIVQLFGNDPEDLAEAAEIVAELGF 80 (309)
T ss_dssp -E---TTTSSHHHHHHHHCCTSSSBEE-S-EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE-S-HHHHHHHHHHHCCTT-
T ss_pred CccCCCCCchHHHHHHHHHHCCCeEEEcCCEEECcccccccceeecccccccccceeEEEeeccHHHHHHHHHhhhccCC
Confidence 58999999999999999999976699999999999998887778888888899999999999999999999999999999
Q ss_pred CEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEE
Q 017176 92 DEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFI 171 (376)
Q Consensus 92 d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~ 171 (376)
|+||||||||+++++++| +|++||++|+.+.+||+++++.+++||+||+|+||++. .+++.++ .+.++++|+++|+
T Consensus 81 ~~IDlN~GCP~~~v~~~g-~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~--~~~~~~~-~~~l~~~G~~~i~ 156 (309)
T PF01207_consen 81 DGIDLNMGCPAPKVTKGG-AGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDS--PEETIEF-ARILEDAGVSAIT 156 (309)
T ss_dssp SEEEEEE---SHHHHHCT--GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT----CHHHHHH-HHHHHHTT--EEE
T ss_pred cEEeccCCCCHHHHhcCC-cChhhhcChHHhhHHHHhhhcccccceEEecccccccc--hhHHHHH-HHHhhhcccceEE
Confidence 999999999999988766 59999999999999999999999999999999999843 2233443 3456789999999
Q ss_pred EccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHhhCCchhhHhh
Q 017176 172 IHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHV 250 (376)
Q Consensus 172 vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~lf~~~~ 250 (376)
||+||..+.... +.+|+.++++++.+ ++|||+||||.|++|+.++++ +||||||||||++.|||+|.+ .
T Consensus 157 vH~Rt~~q~~~~--------~a~w~~i~~i~~~~-~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~nP~lf~~-~ 226 (309)
T PF01207_consen 157 VHGRTRKQRYKG--------PADWEAIAEIKEAL-PIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALGNPWLFRE-I 226 (309)
T ss_dssp EECS-TTCCCTS-----------HHHHHHCHHC--TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC-CCHHCH-H
T ss_pred EecCchhhcCCc--------ccchHHHHHHhhcc-cceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhhcCHHhhh-h
Confidence 999997654332 45699999998876 699999999999999999999 899999999999999999864 2
Q ss_pred hhhhhCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCCCChHHHHHHHHHHhhhhhHHHHHH
Q 017176 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLE 328 (376)
Q Consensus 251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 328 (376)
.....|......+..+.+..+.+|.+.+.+++++ ...++.++||+.||++++++++.||+.+++. ++..++.+.|+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~k~~~~y~~~~~~~~~~r~~l~~~-~~~~e~~~~l~ 302 (309)
T PF01207_consen 227 DQIKEGEPEPFPPIAERLDIILRHYDYMEEFYGE-EKALRQMRKHLKWYFKGFPGARKFRRELNKC-KTLEEFLELLE 302 (309)
T ss_dssp HCHHHHTT--S--HHHHHHHHHHHHHHHHHHHHC-CHHHHHHHTTCCCCTTTSTTHHHHHHHHCCH--SHHHHHHHH-
T ss_pred hhhccCCCCCCCchhHHHHHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHccCCcHHHHHHHHHhh-CCHHHHhhhhc
Confidence 2222332222222445556666666677778876 6789999999999999999999999887443 44445555554
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-57 Score=437.78 Aligned_cols=313 Identities=25% Similarity=0.436 Sum_probs=260.9
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHH
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAK 81 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~ 81 (376)
||++.+++|+++|||+++||.+||.+|+++| +++++|||++++.+.+..++...++..++.+.|+++||+|++|+++++
T Consensus 1 ~~~~~~~~~l~lAPm~~~t~~~fR~l~~~~g-~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~g~~~~~~~~ 79 (319)
T TIGR00737 1 IGNIQLKSRVVLAPMAGVTDSPFRRLVAEYG-AGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLFGSDPDTMAE 79 (319)
T ss_pred CCCccCCCCEEecCCCCCCcHHHHHHHHHHC-CCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEeCCCHHHHHH
Confidence 5889999999999999999999999999998 899999999999988777666777778889999999999999999999
Q ss_pred HHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCc-cHHHHHHHHHH
Q 017176 82 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHD-SYNQLCDFIYK 160 (376)
Q Consensus 82 aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~-~~~~~~~~i~~ 160 (376)
+|++++++|||+||||+|||+.++++.+. |+.++++|+++.+|+++|++.+++||+||+|+||++.. +..++ ++
T Consensus 80 aa~~~~~~G~d~IelN~gcP~~~~~~~~~-Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~----a~ 154 (319)
T TIGR00737 80 AAKINEELGADIIDINMGCPVPKITKKGA-GSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEA----AR 154 (319)
T ss_pred HHHHHHhCCCCEEEEECCCCHHHhcCCCc-cchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHH----HH
Confidence 99999999999999999999876655443 66789999999999999999999999999999997632 23332 44
Q ss_pred HhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHH
Q 017176 161 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAA 239 (376)
Q Consensus 161 ~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~ 239 (376)
.++++|+|+|+||+|+... +.+ .+..|+.++++++.. ++|||+||||.|++|++++++ +|||+||+||++
T Consensus 155 ~l~~~G~d~i~vh~r~~~~-~~~-------~~~~~~~i~~i~~~~-~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~ 225 (319)
T TIGR00737 155 IAEDAGAQAVTLHGRTRAQ-GYS-------GEANWDIIARVKQAV-RIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGA 225 (319)
T ss_pred HHHHhCCCEEEEEcccccc-cCC-------CchhHHHHHHHHHcC-CCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhh
Confidence 5678999999999997532 221 133588888888765 799999999999999999996 899999999999
Q ss_pred hhCCchhhHhhhhhhh-CCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCCCChHHHHHHHHHHh
Q 017176 240 YQNPWYTLGHVDTAIY-GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQ 318 (376)
Q Consensus 240 l~~P~lf~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y~~~~~~~~~~r~~~~~~~~ 318 (376)
+.||||| +++..... +...+..+..+.++.+.+|.+.+.++||+ ..++..+|||+.+|+++++++++||+++.+. +
T Consensus 226 l~~P~l~-~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~-~ 302 (319)
T TIGR00737 226 LGNPWLF-RQIEQYLTTGKYKPPPTFAEKLDAILRHLQLLADYYGE-SKGLRIARKHIAWYLKGFPGNAALRQTLNHA-S 302 (319)
T ss_pred hhCChHH-HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHhcCCcHHHHHHHHHcC-C
Confidence 9999996 45544333 33233345667777777787777888886 6789999999999999999999999988543 6
Q ss_pred hhhhHHHHHHHHHH
Q 017176 319 TCKTVKSFLEETIV 332 (376)
Q Consensus 319 ~~~~~~~~~~~~~~ 332 (376)
+..++.+++++++.
T Consensus 303 ~~~~~~~~~~~~~~ 316 (319)
T TIGR00737 303 SFQEVKQLLDDFFE 316 (319)
T ss_pred CHHHHHHHHHHHHh
Confidence 67777777776654
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-55 Score=415.94 Aligned_cols=326 Identities=35% Similarity=0.512 Sum_probs=260.6
Q ss_pred EEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHHHHHHHHHCCC
Q 017176 12 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNY 91 (376)
Q Consensus 12 ~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~ 91 (376)
++|||+++|+.+||.++|.+| +.++||||+.++.+++..+.....+++.++++|+++|++|+||+.+.+||++++.++
T Consensus 22 i~APMvd~S~l~fR~L~R~y~-~~l~yTpMi~a~~fv~~ek~r~~~~st~~~D~PLIvQf~~ndp~~ll~Aa~lv~~y~- 99 (358)
T KOG2335|consen 22 IVAPMVDYSELAFRRLVRLYG-ADLLYTPMIHAKTFVHSEKYRDSELSTSPEDRPLIVQFGGNDPENLLKAARLVQPYC- 99 (358)
T ss_pred ccCCcccccHHHHHHHHHHhC-CceEechHHHHHHHhcCccchhhhcccCCCCCceEEEEcCCCHHHHHHHHHHhhhhc-
Confidence 899999999999999999995 999999999999999887777778889999999999999999999999999999997
Q ss_pred CEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEE
Q 017176 92 DEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFI 171 (376)
Q Consensus 92 d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~ 171 (376)
|+||||||||+ ++.++|+||+.|+.+++++.++|+++++.++.||++|||++.|.. +++++ ++.++++|++.++
T Consensus 100 D~idlNcGCPq-~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~----kTvd~-ak~~e~aG~~~lt 173 (358)
T KOG2335|consen 100 DGIDLNCGCPQ-KVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLE----KTVDY-AKMLEDAGVSLLT 173 (358)
T ss_pred CcccccCCCCH-HHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHH----HHHHH-HHHHHhCCCcEEE
Confidence 99999999996 578899999999999999999999999999999999999985543 33443 4567899999999
Q ss_pred EccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHhhCCchhhHhh
Q 017176 172 IHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHV 250 (376)
Q Consensus 172 vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~lf~~~~ 250 (376)
|||||+.++|. ..+|++|+.++.+++.+++||||+||+|.+.+|+.++++ +||||||+|||+|.|||+|..
T Consensus 174 VHGRtr~~kg~------~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~NPa~F~~-- 245 (358)
T KOG2335|consen 174 VHGRTREQKGL------KTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSARGLLYNPALFLT-- 245 (358)
T ss_pred EecccHHhcCC------CCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhcCchhhcc--
Confidence 99999988874 246778999999999987799999999999999999999 999999999999999999843
Q ss_pred hhhhhCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCCCCh-HHHHHHHHHHhhhhhHHHHHHH
Q 017176 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNG-LFKRKADAAFQTCKTVKSFLEE 329 (376)
Q Consensus 251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y~~~~~~~~-~~r~~~~~~~~~~~~~~~~~~~ 329 (376)
..++ .+..+++++|++++ .+++|.. -...++-|+...++.+-... .+|+.+ .+.+.+.++.+|+++
T Consensus 246 --~~~~-----~~~~~~~~~~l~~~---~e~~g~~--~~~~~~~Hl~~m~~~~~~~~~~~r~~~-~~~~~~~~~~~~l~~ 312 (358)
T KOG2335|consen 246 --AGYG-----PTPWGCVEEYLDIA---REFGGLS--SFSLIRHHLFKMLRPLLSIHQDLRRDL-AALNSCESVIDFLEE 312 (358)
T ss_pred --CCCC-----CCHHHHHHHHHHHH---HHcCCCc--hhhHHHHHHHHHHHHHHhhhHHHHHHH-hhccchhhHHHHHHH
Confidence 1111 23467888887765 3444442 23444555554444433333 355555 445778899999997
Q ss_pred HHHhCCCCCCCCCCcCCC-------CCccccccccCCCCCCCCc
Q 017176 330 TIVAIPDSVLDSPIEEAP-------RGREDLFADVHDLLPPPYK 366 (376)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 366 (376)
....+...+.+.+..... .|.+.-+++..+.+||.++
T Consensus 313 ~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 356 (358)
T KOG2335|consen 313 LVLMVRKRVEDGFGRGVEEITKFITPGPEDSLAAEYRVLPPWRS 356 (358)
T ss_pred HHHHHHhhhccccccCccccccccCCchhhhcccccccCCCccc
Confidence 777776666555443331 2555555555666666543
|
|
| >KOG2333 consensus Uncharacterized conserved protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-46 Score=357.22 Aligned_cols=278 Identities=21% Similarity=0.303 Sum_probs=239.3
Q ss_pred eecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHHHHH
Q 017176 5 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATE 84 (376)
Q Consensus 5 ~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~aa~ 84 (376)
+.+..+.+|||++++++.+||++|+.+| ++.++.||..+..++.+...-+.+++.|..+.-++|||.|+.|+.+.++|+
T Consensus 261 lD~r~K~~LaPLTTvGNLPFRRlCk~lG-ADvTcgEMA~~tpLlqG~~sEWALlkRH~sEdiFGVQlag~~pdt~~kaaq 339 (614)
T KOG2333|consen 261 LDFRDKKYLAPLTTVGNLPFRRLCKKLG-ADVTCGEMAMATPLLQGTASEWALLKRHQSEDIFGVQLAGSKPDTAAKAAQ 339 (614)
T ss_pred cccccceeeccccccCCccHHHHHHHhC-CccchhHHHHHHHHhcccchhhhhhhhcCcccceeeEeccCChHHHHHHHH
Confidence 5577889999999999999999999997 899999999999999988888888888888889999999999999999999
Q ss_pred HHHH-CCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC-ccEEEEecCCCCCCcc-HHHHHHHHHHH
Q 017176 85 LANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDS-YNQLCDFIYKV 161 (376)
Q Consensus 85 ~~~~-~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~-~pv~vKiR~g~~~~~~-~~~~~~~i~~~ 161 (376)
.+.+ ..+|+||||+|||.+-+.++|+ |++||++|..+.++|+++...++ +|+|||||.|..+... ..++ |..+
T Consensus 340 ~i~e~~~VDFIDlN~GCPIDlvy~qG~-GsALl~rp~rl~~~l~~m~~vs~~iPiTVKiRTG~keg~~~a~~L---i~~i 415 (614)
T KOG2333|consen 340 VIAETCDVDFIDLNMGCPIDLVYRQGG-GSALLNRPARLIRILRAMNAVSGDIPITVKIRTGTKEGHPVAHEL---IPRI 415 (614)
T ss_pred HHHhhcceeeeeccCCCChheeeccCC-cchhhcCcHHHHHHHHHHHHhccCCCeEEEEecccccCchhHHHH---HHHH
Confidence 7754 6689999999999999999998 99999999999999999988875 5999999999877544 3333 4455
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCC-CeEEEecCCCCHHHHHHHHH-cC-cCeeEEchH
Q 017176 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD-LTFTLNGGINTVDEVNAALR-KG-AHHVMVGRA 238 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~-ipVi~nGgI~s~~da~~~l~-~G-ad~VmiGRa 238 (376)
..+.|+++||+|||++.+++. +..+|+++.++.+.... +|+|+||||.|.+|..+-+. ++ +|+||||||
T Consensus 416 ~newg~savTlHGRSRqQRYT--------K~AnWdYi~e~a~~ak~~l~liGNGDi~S~eDw~~~~~~~p~v~svMIaRG 487 (614)
T KOG2333|consen 416 VNEWGASAVTLHGRSRQQRYT--------KSANWDYIEECADKAKSALPLIGNGDILSWEDWYERLNQNPNVDSVMIARG 487 (614)
T ss_pred hhccCcceEEecCchhhhhhh--------cccChHHHHHHHHhcccCceeEecCccccHHHHHHHhhcCCCcceEEeecc
Confidence 557999999999999876654 33459999998877655 99999999999999888777 44 999999999
Q ss_pred HhhCCchhhHhhhhhhhCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhh
Q 017176 239 AYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFF 300 (376)
Q Consensus 239 ~l~~P~lf~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y~ 300 (376)
+|..|||| .+|+...+.+. ++.+|.++++.|.+|+ ++|||++..+|...|++++.|+
T Consensus 488 ALIKPWIF-tEIkeqq~wD~-sSteRldiL~df~nyG---LeHWGSDt~GVetTRRFlLE~l 544 (614)
T KOG2333|consen 488 ALIKPWIF-TEIKEQQHWDI-SSTERLDILKDFCNYG---LEHWGSDTKGVETTRRFLLEFL 544 (614)
T ss_pred ccccchHh-hhhhhhhcCCc-cchHHHHHHHHHHhhh---hhhcCCccccHHHHHHHHHHHH
Confidence 99999997 56766555544 4578999999999987 7899999899988888877654
|
|
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=327.88 Aligned_cols=223 Identities=30% Similarity=0.540 Sum_probs=193.7
Q ss_pred cEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHHHHHHHHHC
Q 017176 10 WFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAY 89 (376)
Q Consensus 10 ri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~ 89 (376)
++++|||.++||.+||.+++.+| ++++||||+.++.+....+....+...++.+.|+++||.|+++++|+++|++++++
T Consensus 1 ~~~~aPm~~~~~~~fR~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~g~~~~~~~~aa~~~~~a 79 (231)
T cd02801 1 KLILAPMVGVTDLPFRLLCRRYG-ADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLGGSDPETLAEAAKIVEEL 79 (231)
T ss_pred CeEeCCCCCCcCHHHHHHHHHHC-CCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEcCCCHHHHHHHHHHHHhc
Confidence 47899999999999999999998 99999999999998887766556666778899999999999999999999999999
Q ss_pred CCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccE
Q 017176 90 NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRH 169 (376)
Q Consensus 90 G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~ 169 (376)
|||+||||+|||..+ .++++||++++++++++.++++++++.+++|++||+|.||++. ++..++ .+.+++.|+|+
T Consensus 80 G~d~ieln~g~p~~~-~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~---~~~~~~-~~~l~~~Gvd~ 154 (231)
T cd02801 80 GADGIDLNMGCPSPK-VTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDE---EETLEL-AKALEDAGASA 154 (231)
T ss_pred CCCEEEEeCCCCHHH-HhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCc---hHHHHH-HHHHHHhCCCE
Confidence 999999999999975 5678999999999999999999999998999999999998763 233332 34556799999
Q ss_pred EEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHhhCCchhh
Q 017176 170 FIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTL 247 (376)
Q Consensus 170 I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~lf~ 247 (376)
|+||+|+..... ..+.+++.++++++. +++||++||||.|++|+.++++ +|||+||+||+++.|||+|.
T Consensus 155 i~v~~~~~~~~~--------~~~~~~~~~~~i~~~-~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~~P~~~~ 224 (231)
T cd02801 155 LTVHGRTREQRY--------SGPADWDYIAEIKEA-VSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLFR 224 (231)
T ss_pred EEECCCCHHHcC--------CCCCCHHHHHHHHhC-CCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHhCCHHHH
Confidence 999999753211 123358888887765 5899999999999999999999 69999999999999999974
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=299.87 Aligned_cols=209 Identities=22% Similarity=0.316 Sum_probs=163.6
Q ss_pred cEEEccCCCCChHHHHHHHHHhCCCcEE--------------------EecceeecccccccchhhhhhccCCCCCCEEE
Q 017176 10 WFSVAPMMDWTDNHYRTLARLISKHAWL--------------------YTEMLAAETIIYQQGNLDRFLAFSPEQHPIVL 69 (376)
Q Consensus 10 ri~lAPM~~~td~~~r~~~~~~Gg~gl~--------------------~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~v 69 (376)
|++||||+|+||.+||......+|++++ .+||++.+.+-+-..... .....+.|+++
T Consensus 1 ~~~lApMag~td~~f~~~~~~~~g~~~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~---~~~~~~~p~~v 77 (233)
T cd02911 1 PVALASMAGITDGDFCRKRADHAGLVFLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIK---ALKDSNVLVGV 77 (233)
T ss_pred CceeeecCCCcCHHHHHhhCccCCEEEEcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHH---HhhccCCeEEE
Confidence 6899999999999999954333346665 445554442111111111 12334679999
Q ss_pred EecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCc
Q 017176 70 QIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHD 149 (376)
Q Consensus 70 QL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~ 149 (376)
||+|++++.+.++|+.+++. .|+||||+|||++++++++. |++|+++|+.+.++++++++ .++||+||+|+||+ .
T Consensus 78 qi~g~~~~~~~~aa~~~~~~-~~~ielN~gCP~~~v~~~g~-G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir~g~~--~ 152 (233)
T cd02911 78 NVRSSSLEPLLNAAALVAKN-AAILEINAHCRQPEMVEAGA-GEALLKDPERLSEFIKALKE-TGVPVSVKIRAGVD--V 152 (233)
T ss_pred EecCCCHHHHHHHHHHHhhc-CCEEEEECCCCcHHHhcCCc-chHHcCCHHHHHHHHHHHHh-cCCCEEEEEcCCcC--c
Confidence 99999999999999999886 59999999999998887775 99999999999999999998 59999999999987 3
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcC
Q 017176 150 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG 229 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~G 229 (376)
+..++ ++.++++|+|.|+++.+.. | .+.+|+.+++++ +++|||+||||.|++|+.+++++|
T Consensus 153 ~~~~l----a~~l~~aG~d~ihv~~~~~---g---------~~ad~~~I~~i~---~~ipVIgnGgI~s~eda~~~l~~G 213 (233)
T cd02911 153 DDEEL----ARLIEKAGADIIHVDAMDP---G---------NHADLKKIRDIS---TELFIIGNNSVTTIESAKEMFSYG 213 (233)
T ss_pred CHHHH----HHHHHHhCCCEEEECcCCC---C---------CCCcHHHHHHhc---CCCEEEEECCcCCHHHHHHHHHcC
Confidence 33343 4556789999987765432 1 123477777765 489999999999999999999999
Q ss_pred cCeeEEchHHhhCCchhh
Q 017176 230 AHHVMVGRAAYQNPWYTL 247 (376)
Q Consensus 230 ad~VmiGRa~l~~P~lf~ 247 (376)
||+||+||+ .|||+|.
T Consensus 214 aD~VmiGR~--~~p~~~~ 229 (233)
T cd02911 214 ADMVSVARA--SLPENIE 229 (233)
T ss_pred CCEEEEcCC--CCchHHH
Confidence 999999999 9999973
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=294.59 Aligned_cols=243 Identities=17% Similarity=0.128 Sum_probs=187.4
Q ss_pred CCCeecCCcEEEccCC-------CCChHHHHHHH-HHhCCCcEEEecceeecccccc---------cchhh---hhh-cc
Q 017176 2 VARQYLPPWFSVAPMM-------DWTDNHYRTLA-RLISKHAWLYTEMLAAETIIYQ---------QGNLD---RFL-AF 60 (376)
Q Consensus 2 i~~~~l~nri~lAPM~-------~~td~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~---------~~~~~---~~~-~~ 60 (376)
|+++++||||++|||. ..|+..+++|. ++.||+|+++||.+.++..... +..+. ++. .+
T Consensus 7 i~~~~lkNRiv~apm~~~~~~~G~~t~~~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~l~~~v 86 (343)
T cd04734 7 LGHLTLRNRIVSTAHATNYAEDGLPSERYIAYHEERARGGAGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFRRLAEAV 86 (343)
T ss_pred eCCEEecCCeEECCcccccccCCCCCHHHHHHHHHHHhCCCCEEEEeeeeeCCcccCCCCccccCCHHHHHHHHHHHHHH
Confidence 6899999999999995 35888999886 6779999999999988743221 11111 222 26
Q ss_pred CCCCCCEEEEecCCC--------------------------------------HHHHHHHHHHHHHCCCCEEEecC--C-
Q 017176 61 SPEQHPIVLQIGGSN--------------------------------------LDNLAKATELANAYNYDEINLNC--G- 99 (376)
Q Consensus 61 ~~~~~p~~vQL~g~~--------------------------------------~~~~~~aa~~~~~~G~d~IeiN~--g- 99 (376)
|..+.++++||++.. .++|++||++++++|||+||||+ |
T Consensus 87 h~~g~~~~~Ql~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahGy 166 (343)
T cd04734 87 HAHGAVIMIQLTHLGRRGDGDGSWLPPLAPSAVPEPRHRAVPKAMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGH 166 (343)
T ss_pred HhcCCeEEEeccCCCcCcCcccCCCcccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccch
Confidence 888999999997410 37899999999999999999999 5
Q ss_pred ------CCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCC----ccHHHHHHHHHHHhhcCC-cc
Q 017176 100 ------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH----DSYNQLCDFIYKVSSLSP-TR 168 (376)
Q Consensus 100 ------cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~----~~~~~~~~~i~~~~e~~G-vd 168 (376)
||.. +.|+|+||++++||.+++.+|+++||+.++.+++||+|+++++. .+.++.+++ ++.++++| +|
T Consensus 167 Ll~qFlsp~~-N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~-~~~l~~~G~vd 244 (343)
T cd04734 167 LIDQFLSPLT-NRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEI-AARLAAEGLID 244 (343)
T ss_pred HHHHhhCCCc-CCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHH-HHHHHhcCCCC
Confidence 5654 57899999999999999999999999999989999999998663 246666654 56677898 99
Q ss_pred EEEEccCccccC-CCCC-CCCCCCCc-ccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHhhCCc
Q 017176 169 HFIIHSRKALLN-GISP-AENRTIPP-LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 169 ~I~vh~r~~~~~-g~~~-~~~~~~~~-~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~ 244 (376)
+|+||++..... +... ......++ ..++.++++++. .++|||+||+|.|+++++++++ ++||+||+||+++.|||
T Consensus 245 ~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~-~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~ 323 (343)
T cd04734 245 YVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQA-VDLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPH 323 (343)
T ss_pred EEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHH-cCCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhCcc
Confidence 999987653211 0000 00001111 235666666665 4899999999999999999999 67999999999999999
Q ss_pred hhh
Q 017176 245 YTL 247 (376)
Q Consensus 245 lf~ 247 (376)
|+.
T Consensus 324 l~~ 326 (343)
T cd04734 324 LVA 326 (343)
T ss_pred HHH
Confidence 974
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=285.52 Aligned_cols=239 Identities=13% Similarity=0.149 Sum_probs=184.7
Q ss_pred CCCeecCCcEEEccCCC---------CChHHHHHHH-HHhCCCcEEEecceeecccccc---------cchhh---hhh-
Q 017176 2 VARQYLPPWFSVAPMMD---------WTDNHYRTLA-RLISKHAWLYTEMLAAETIIYQ---------QGNLD---RFL- 58 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~---------~td~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~---------~~~~~---~~~- 58 (376)
||++++||||++|||.. .|+..+++|. ++.||+|+++||.+.+...... +..+. ++.
T Consensus 9 ig~~~lkNRiv~apm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r~l~d 88 (337)
T PRK13523 9 IKDVTLKNRIVMSPMCMYSSENKDGKVTNFHLIHYGTRAAGQVGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLHKLVT 88 (337)
T ss_pred ECCEeeecccEecccccccccCCCCCCCHHHHHHHHHHHcCCCeEEEECCeEECccccCCCCceecCCHHHHHHHHHHHH
Confidence 68999999999999953 3667888886 6779999999998877643211 11111 222
Q ss_pred ccCCCCCCEEEEecCCC-----------------------------------HHHHHHHHHHHHHCCCCEEEecCC----
Q 017176 59 AFSPEQHPIVLQIGGSN-----------------------------------LDNLAKATELANAYNYDEINLNCG---- 99 (376)
Q Consensus 59 ~~~~~~~p~~vQL~g~~-----------------------------------~~~~~~aa~~~~~~G~d~IeiN~g---- 99 (376)
.+|..+.++++||++.. .++|++||++++++|||+||||+|
T Consensus 89 ~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyL 168 (337)
T PRK13523 89 FIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHGYL 168 (337)
T ss_pred HHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchH
Confidence 36788999999997520 378999999999999999999999
Q ss_pred -----CCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCC--CCCccHHHHHHHHHHHhhcCCccEEEE
Q 017176 100 -----CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV--DDHDSYNQLCDFIYKVSSLSPTRHFII 172 (376)
Q Consensus 100 -----cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~--~~~~~~~~~~~~i~~~~e~~Gvd~I~v 172 (376)
||.. +.|+|+||++|+||.+++.||+++||+.++.||++|++..- ....+.++.+++ ++.+++.|+|+|+|
T Consensus 169 l~qFlSp~~-N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i-~~~l~~~gvD~i~v 246 (337)
T PRK13523 169 INEFLSPLS-NKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQY-AKWMKEQGVDLIDV 246 (337)
T ss_pred HHHhcCCcc-CCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHHH-HHHHHHcCCCEEEe
Confidence 7985 48999999999999999999999999999999999999721 111246666654 45667899999999
Q ss_pred ccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHhhCCchhhH
Q 017176 173 HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLG 248 (376)
Q Consensus 173 h~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~lf~~ 248 (376)
|+++..... .. ..+...+++..++++. +++||+++|+|.|+++++++++ .+||+|++||++++||||+.+
T Consensus 247 s~g~~~~~~---~~--~~~~~~~~~~~~ik~~-~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k 317 (337)
T PRK13523 247 SSGAVVPAR---ID--VYPGYQVPFAEHIREH-ANIATGAVGLITSGAQAEEILQNNRADLIFIGRELLRNPYFPRI 317 (337)
T ss_pred CCCCCCCCC---CC--CCccccHHHHHHHHhh-cCCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHhCccHHHH
Confidence 998632100 00 0111135666666654 5899999999999999999999 569999999999999999643
|
|
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=280.77 Aligned_cols=228 Identities=21% Similarity=0.278 Sum_probs=175.5
Q ss_pred CCCeecCCcEEEcc-CCCCChHHHHHHHHHhCCCcEEEecceeec---------------------cccccc-chhhhhh
Q 017176 2 VARQYLPPWFSVAP-MMDWTDNHYRTLARLISKHAWLYTEMLAAE---------------------TIIYQQ-GNLDRFL 58 (376)
Q Consensus 2 i~~~~l~nri~lAP-M~~~td~~~r~~~~~~Gg~gl~~te~v~~~---------------------~~~~~~-~~~~~~~ 58 (376)
+++++|+|||++|| |.+.++..+|.+++. |+|+++|+.++.+ ++.... ....+.+
T Consensus 5 ~~g~~l~npi~~aag~~~~~~~~~~~~~~~--G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~~~~ 82 (300)
T TIGR01037 5 LFGIRFKNPLILASGIMGSGVESLRRIDRS--GAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFLEEL 82 (300)
T ss_pred ECCEECCCCCEeCCcCCCCCHHHHHHHHHc--CCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHHHHH
Confidence 57899999999999 478999999987765 5899999555544 332211 1111111
Q ss_pred c--cCCCCCCEEEEecCCCHHHHHHHHHHHHHCC--CCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC
Q 017176 59 A--FSPEQHPIVLQIGGSNLDNLAKATELANAYN--YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN 134 (376)
Q Consensus 59 ~--~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G--~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~ 134 (376)
. .++.+.|+++||+|++++++.++|+.+++++ +|+||||+|||+.+ + +|++++++++++.++++++++.++
T Consensus 83 ~~~~~~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~----~-~g~~l~~~~~~~~eiv~~vr~~~~ 157 (300)
T TIGR01037 83 KPVREEFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVK----G-GGIAIGQDPELSADVVKAVKDKTD 157 (300)
T ss_pred HHHhccCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCC----C-CccccccCHHHHHHHHHHHHHhcC
Confidence 1 2334579999999999999999999999864 89999999999863 2 589999999999999999999999
Q ss_pred ccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccc-----c----------CCCCCCCCCCCCcccHHHHH
Q 017176 135 VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL-----L----------NGISPAENRTIPPLKYEYYY 199 (376)
Q Consensus 135 ~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~-----~----------~g~~~~~~~~~~~~~~~~v~ 199 (376)
+||+||++.++++ ..+ +++.++++|+|+|+||++... . +|.++ ..+.+..++.++
T Consensus 158 ~pv~vKi~~~~~~---~~~----~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg---~~~~~~~l~~v~ 227 (300)
T TIGR01037 158 VPVFAKLSPNVTD---ITE----IAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSG---PAIKPIALRMVY 227 (300)
T ss_pred CCEEEECCCChhh---HHH----HHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccc---hhhhHHHHHHHH
Confidence 9999999965432 222 345567899999999965421 0 11111 122333457788
Q ss_pred HHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchhh
Q 017176 200 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247 (376)
Q Consensus 200 ~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~ 247 (376)
++++.. ++|||+||||.|++|+.+++++|||+||+||+++.|||+|.
T Consensus 228 ~i~~~~-~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~ 274 (300)
T TIGR01037 228 DVYKMV-DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFK 274 (300)
T ss_pred HHHhcC-CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHH
Confidence 887764 89999999999999999999999999999999999999863
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=277.22 Aligned_cols=239 Identities=15% Similarity=0.167 Sum_probs=180.7
Q ss_pred CC-CeecCCcEEEccCCC--------CChHHHHHHH-HHhCCCcEEEecceeecccccccc------------hhh---h
Q 017176 2 VA-RQYLPPWFSVAPMMD--------WTDNHYRTLA-RLISKHAWLYTEMLAAETIIYQQG------------NLD---R 56 (376)
Q Consensus 2 i~-~~~l~nri~lAPM~~--------~td~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~~~------------~~~---~ 56 (376)
|+ +++|||||++|||.. .|+..+.++. |+.||+|+++||.+.++......+ .+. +
T Consensus 7 i~~~~~lkNRi~~~p~~~~~~~~~g~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~ 86 (338)
T cd04733 7 LPNGATLPNRLAKAAMSERLADGRGLPTPELIRLYRRWAEGGIGLIITGNVMVDPRHLEEPGIIGNVVLESGEDLEAFRE 86 (338)
T ss_pred cCCCcEEcccceecccccccccCCCCCCHHHHHHHHHHhCCCceEEEEeeEEECcccccCCCcCCCcccCCHHHHHHHHH
Confidence 67 499999999999953 4778888886 777999999999888763321111 111 2
Q ss_pred hh-ccCCCCCCEEEEecCC-----------------------------------------CHHHHHHHHHHHHHCCCCEE
Q 017176 57 FL-AFSPEQHPIVLQIGGS-----------------------------------------NLDNLAKATELANAYNYDEI 94 (376)
Q Consensus 57 ~~-~~~~~~~p~~vQL~g~-----------------------------------------~~~~~~~aa~~~~~~G~d~I 94 (376)
+. .+|+.+.++++||++. ..++|++||++++++|||+|
T Consensus 87 l~~~vh~~G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA~ra~~aGfDgV 166 (338)
T cd04733 87 WAAAAKANGALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDRFAHAARLAQEAGFDGV 166 (338)
T ss_pred HHHHHHhcCCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 22 2688899999998751 02689999999999999999
Q ss_pred EecCCC---------CCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecC------CCCCCccHHHHHHH
Q 017176 95 NLNCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRI------GVDDHDSYNQLCDF 157 (376)
Q Consensus 95 eiN~gc---------P~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~------g~~~~~~~~~~~~~ 157 (376)
|||+|| |.. +.|+|+||++|+||++++.|+|++||+++ ++||.+|++. || +.++.+++
T Consensus 167 eih~a~gyLl~qFlsp~~-N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~----~~eea~~i 241 (338)
T cd04733 167 QIHAAHGYLLSQFLSPLT-NKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGF----TEEDALEV 241 (338)
T ss_pred EEchhhhhHHHHhcCCcC-CCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCC----CHHHHHHH
Confidence 999997 764 47899999999999999999999999998 4789999873 33 34455554
Q ss_pred HHHHhhcCCccEEEEccCccccCCCC--CCCCCCCC-cccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCee
Q 017176 158 IYKVSSLSPTRHFIIHSRKALLNGIS--PAENRTIP-PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHV 233 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh~r~~~~~g~~--~~~~~~~~-~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~V 233 (376)
++.+++.|+|+|+||+|+....... .......+ ...++...++++. +++||+++|+|.++++++++++ .+||+|
T Consensus 242 -a~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~-v~iPVi~~G~i~t~~~a~~~l~~g~aD~V 319 (338)
T cd04733 242 -VEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKV-TKTPLMVTGGFRTRAAMEQALASGAVDGI 319 (338)
T ss_pred -HHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHH-cCCCEEEeCCCCCHHHHHHHHHcCCCCee
Confidence 4566789999999999864211110 00000011 1124555566665 4999999999999999999999 569999
Q ss_pred EEchHHhhCCchhh
Q 017176 234 MVGRAAYQNPWYTL 247 (376)
Q Consensus 234 miGRa~l~~P~lf~ 247 (376)
++||++++||||+.
T Consensus 320 ~lgR~~iadP~~~~ 333 (338)
T cd04733 320 GLARPLALEPDLPN 333 (338)
T ss_pred eeChHhhhCccHHH
Confidence 99999999999964
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-34 Score=277.52 Aligned_cols=237 Identities=16% Similarity=0.134 Sum_probs=181.6
Q ss_pred CCC-eecCCcEEEccCCC--------CChHHHHHHH-HHhCCCcEEEecceeecccccc---------cchhh---hhh-
Q 017176 2 VAR-QYLPPWFSVAPMMD--------WTDNHYRTLA-RLISKHAWLYTEMLAAETIIYQ---------QGNLD---RFL- 58 (376)
Q Consensus 2 i~~-~~l~nri~lAPM~~--------~td~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~---------~~~~~---~~~- 58 (376)
||+ ++|||||++|||.. +|+..+.+|. ++.| +|+++||.+.+...... +..+. ++.
T Consensus 7 ig~g~~lkNRiv~apm~~~~~~~~G~~t~~~~~yy~~rA~g-~glIi~e~~~v~~~~~~~~~~~~~~~d~~i~~~~~l~~ 85 (353)
T cd04735 7 LKNGVTLKNRFVMAPMTTYSSNPDGTITDDELAYYQRRAGG-VGMVITGATYVSPSGIGFEGGFSADDDSDIPGLRKLAQ 85 (353)
T ss_pred cCCCeEEeCcceecccccCccCCCCCCCHHHHHHHHHHhCC-CCEEEECceEECcccCcCCCCceecChhhhHHHHHHHH
Confidence 677 99999999999953 5788888886 5556 99999999888643211 11122 222
Q ss_pred ccCCCCCCEEEEecCCC----------------------------------------HHHHHHHHHHHHHCCCCEEEecC
Q 017176 59 AFSPEQHPIVLQIGGSN----------------------------------------LDNLAKATELANAYNYDEINLNC 98 (376)
Q Consensus 59 ~~~~~~~p~~vQL~g~~----------------------------------------~~~~~~aa~~~~~~G~d~IeiN~ 98 (376)
.+|..+.++++||++.. .++|++||++++++|||+||||+
T Consensus 86 ~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ 165 (353)
T cd04735 86 AIKSKGAKAILQIFHAGRMANPALVPGGDVVSPSAIAAFRPGAHTPRELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHG 165 (353)
T ss_pred HHHhCCCeEEEEecCCCCCCCccccCCCceecCCCCcccCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 36888999999996410 26899999999999999999998
Q ss_pred C---------CCCccccCCCCccccccCCHHHHHHHHHHHhcccC----ccEEEEecCCCCCC----ccHHHHHHHHHHH
Q 017176 99 G---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN----VPVSVKCRIGVDDH----DSYNQLCDFIYKV 161 (376)
Q Consensus 99 g---------cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~----~pv~vKiR~g~~~~----~~~~~~~~~i~~~ 161 (376)
+ ||.. +.|+|+|||+++||.+++.||+++||++++ .++.|++|+++++. .+.++..++ ++.
T Consensus 166 ahGyLl~qFlsp~~-N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i-~~~ 243 (353)
T cd04735 166 ANGYLIQQFFSPHS-NRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLAL-VDK 243 (353)
T ss_pred ccchHHHHhcCCcc-CCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHH-HHH
Confidence 6 7985 488999999999999999999999999987 67888888876552 245666654 556
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHh
Q 017176 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l 240 (376)
+++.|+|+|+||++....... ..+...+..+..+++.. .++|||++|+|+|+++++++++.|||+|++||+++
T Consensus 244 L~~~GvD~I~Vs~g~~~~~~~------~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~li 317 (353)
T cd04735 244 LADKGLDYLHISLWDFDRKSR------RGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALETGADLVAIGRGLL 317 (353)
T ss_pred HHHcCCCEEEeccCccccccc------cCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHH
Confidence 678999999999875321100 01111234444444433 37999999999999999999998999999999999
Q ss_pred hCCchhh
Q 017176 241 QNPWYTL 247 (376)
Q Consensus 241 ~~P~lf~ 247 (376)
+||+|+.
T Consensus 318 adPdl~~ 324 (353)
T cd04735 318 VDPDWVE 324 (353)
T ss_pred hCccHHH
Confidence 9999864
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=276.51 Aligned_cols=243 Identities=14% Similarity=0.141 Sum_probs=180.9
Q ss_pred CCCeecCCcEEEccCCC---------CChHHHHHHH-HHhCCCcEEEecceeeccccc------------ccch-hh---
Q 017176 2 VARQYLPPWFSVAPMMD---------WTDNHYRTLA-RLISKHAWLYTEMLAAETIIY------------QQGN-LD--- 55 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~---------~td~~~r~~~-~~~Gg~gl~~te~v~~~~~~~------------~~~~-~~--- 55 (376)
||+++||||+++|||.. .|+..+.+|. ++.||+|+++||.+.+..... ..+. +.
T Consensus 7 ig~~~lkNRiv~apm~~~~~~~~dg~~t~~~~~yy~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~k 86 (382)
T cd02931 7 IGKVEIKNRFAMAPMGPLGLADNDGAFNQRGIDYYVERAKGGTGLIITGVTMVDNEIEQFPMPSLPCPTYNPTAFIRTAK 86 (382)
T ss_pred ECCEEEeCCcEeCCcCcccccCCCCCCCHHHHHHHHHHhcCCCCEEEEEEEEeCCcccccCCCCccccccCCHHHhHHHH
Confidence 68999999999999952 3677888886 677999999999887753311 0111 11
Q ss_pred hhh-ccCCCCCCEEEEecCC----------------------------C-------------HHHHHHHHHHHHHCCCCE
Q 017176 56 RFL-AFSPEQHPIVLQIGGS----------------------------N-------------LDNLAKATELANAYNYDE 93 (376)
Q Consensus 56 ~~~-~~~~~~~p~~vQL~g~----------------------------~-------------~~~~~~aa~~~~~~G~d~ 93 (376)
++. .+|+.+.++++||++. . .++|++||++++++|||+
T Consensus 87 ~l~davh~~G~~i~~QL~H~~Gr~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~ra~~AGfDg 166 (382)
T cd02931 87 EMTERVHAYGTKIFLQLTAGFGRVCIPGFLGEDKPVAPSPIPNRWLPEITCRELTTEEVETFVGKFGESAVIAKEAGFDG 166 (382)
T ss_pred HHHHHHHHcCCEEEEEccCcCCCccCccccCCCCccCCCCCCCCcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 222 3688899999999632 0 268999999999999999
Q ss_pred EEecC---CC-------CCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecC-----CCCC---------
Q 017176 94 INLNC---GC-------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRI-----GVDD--------- 147 (376)
Q Consensus 94 IeiN~---gc-------P~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~-----g~~~--------- 147 (376)
||||+ || |.. +.|+|+||++|+||++++.||+++||+++ ++||++|++. ++++
T Consensus 167 VEih~ah~GyLl~qFLSp~~-N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~ 245 (382)
T cd02931 167 VEIHAVHEGYLLDQFTISLF-NKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQ 245 (382)
T ss_pred EEEeccccChHHHHhcCCcc-CCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhccccccccccccccc
Confidence 99998 65 443 57899999999999999999999999998 5799999985 1111
Q ss_pred --CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCccc-HHHHHHHHhhCCCCeEEEecCCCCHHHHHH
Q 017176 148 --HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK-YEYYYALLRDFPDLTFTLNGGINTVDEVNA 224 (376)
Q Consensus 148 --~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~-~~~v~~~~~~~~~ipVi~nGgI~s~~da~~ 224 (376)
..+.++.+++ ++.++++|+|+|+||+|+.......... ...++.. +..+..+++. +++|||++|+|.+++++++
T Consensus 246 ~~g~~~e~~~~~-~~~l~~~gvD~l~vs~g~~~~~~~~~~~-~~~~~~~~~~~~~~ik~~-~~~pvi~~G~i~~~~~~~~ 322 (382)
T cd02931 246 EKGRDLEEGLKA-AKILEEAGYDALDVDAGSYDAWYWNHPP-MYQKKGMYLPYCKALKEV-VDVPVIMAGRMEDPELASE 322 (382)
T ss_pred cCCCCHHHHHHH-HHHHHHhCCCEEEeCCCCCcccccccCC-ccCCcchhHHHHHHHHHH-CCCCEEEeCCCCCHHHHHH
Confidence 1245666654 5566789999999999874211100000 1112222 3455555555 5899999999999999999
Q ss_pred HHH-cCcCeeEEchHHhhCCchhhH
Q 017176 225 ALR-KGAHHVMVGRAAYQNPWYTLG 248 (376)
Q Consensus 225 ~l~-~Gad~VmiGRa~l~~P~lf~~ 248 (376)
+++ .+||+|++||+++.||||+.+
T Consensus 323 ~l~~g~~D~V~~gR~~ladP~l~~k 347 (382)
T cd02931 323 AINEGIADMISLGRPLLADPDVVNK 347 (382)
T ss_pred HHHcCCCCeeeechHhHhCccHHHH
Confidence 999 669999999999999999643
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=275.63 Aligned_cols=241 Identities=17% Similarity=0.142 Sum_probs=182.3
Q ss_pred CCCeecCCcEEEccCCC-------CChHHHHHHH-HHhCCCcEEEecceeecccccc---------cchhhh---hh-cc
Q 017176 2 VARQYLPPWFSVAPMMD-------WTDNHYRTLA-RLISKHAWLYTEMLAAETIIYQ---------QGNLDR---FL-AF 60 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~-------~td~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~---------~~~~~~---~~-~~ 60 (376)
||+++|||||++|||.. .|+..+++|. ++.||+|+++||.+.+...... +..+.. +. .+
T Consensus 7 ig~~~lkNRiv~~p~~~~~~~~~~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~l~~~v 86 (353)
T cd02930 7 LGFTTLRNRVLMGSMHTGLEELDDGIDRLAAFYAERARGGVGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHRLITDAV 86 (353)
T ss_pred ECCEEEccccEeCCccccccCCCCCCHHHHHHHHHHhcCCceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHHHHHHHH
Confidence 68999999999999962 4788888886 6779999999998887643211 111222 22 36
Q ss_pred CCCCCCEEEEecCC----------------------C------------HHHHHHHHHHHHHCCCCEEEecCC-------
Q 017176 61 SPEQHPIVLQIGGS----------------------N------------LDNLAKATELANAYNYDEINLNCG------- 99 (376)
Q Consensus 61 ~~~~~p~~vQL~g~----------------------~------------~~~~~~aa~~~~~~G~d~IeiN~g------- 99 (376)
|..+.++++||++. . .++|++||++++++|||+||||++
T Consensus 87 h~~g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~q 166 (353)
T cd02930 87 HAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQ 166 (353)
T ss_pred HHcCCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHH
Confidence 88899999999642 0 378999999999999999999876
Q ss_pred --CCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCC----ccHHHHHHHHHHHhhcCCccEEEEc
Q 017176 100 --CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH----DSYNQLCDFIYKVSSLSPTRHFIIH 173 (376)
Q Consensus 100 --cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~----~~~~~~~~~i~~~~e~~Gvd~I~vh 173 (376)
||.. +.|+|+||++++||++++.+++++||+.++.++.|++|+++.|. .+.++.+++ ++.++++|+|+|+|+
T Consensus 167 Flsp~~-N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i-~~~Le~~G~d~i~vs 244 (353)
T cd02930 167 FLAPRT-NKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVAL-AKALEAAGADILNTG 244 (353)
T ss_pred hcCCcc-CCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHH-HHHHHHcCCCEEEeC
Confidence 8875 48899999999999999999999999999878888888876542 256666654 556788999999997
Q ss_pred cCccccCCCCCCCCCCCCcccHH-HHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHhhCCchhh
Q 017176 174 SRKALLNGISPAENRTIPPLKYE-YYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTL 247 (376)
Q Consensus 174 ~r~~~~~g~~~~~~~~~~~~~~~-~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~lf~ 247 (376)
.+... ...+......++..+. ...++++. +++||+++|+|.++++++++++ .+||+||+||++++||||+.
T Consensus 245 ~g~~e--~~~~~~~~~~~~~~~~~~~~~ik~~-v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~dP~~~~ 317 (353)
T cd02930 245 IGWHE--ARVPTIATSVPRGAFAWATAKLKRA-VDIPVIASNRINTPEVAERLLADGDADMVSMARPFLADPDFVA 317 (353)
T ss_pred CCcCC--CCCccccccCCchhhHHHHHHHHHh-CCCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHHCccHHH
Confidence 54211 0000000111222233 33455554 5999999999999999999999 66999999999999999964
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=272.45 Aligned_cols=243 Identities=15% Similarity=0.129 Sum_probs=185.2
Q ss_pred CCCeecCCcEEEccCCC--------CChHHHHHHH-HHhCCCcEEEecceeecccccc---------cchhhh---hh-c
Q 017176 2 VARQYLPPWFSVAPMMD--------WTDNHYRTLA-RLISKHAWLYTEMLAAETIIYQ---------QGNLDR---FL-A 59 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~--------~td~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~---------~~~~~~---~~-~ 59 (376)
|+++++|||+++|||.. .|+..+++|. ++.||+|+++||.+.+...... ...+.. +. .
T Consensus 6 i~~~~l~NR~~~~p~~~~~~~~~g~~~~~~~~~y~~ra~gg~glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (327)
T cd02803 6 IGGLTLKNRIVMAPMTENMATEDGTPTDELIEYYEERAKGGVGLIITEAAYVDPEGKGYPGQLGIYDDEQIPGLRKLTEA 85 (327)
T ss_pred cCCEeeccccEecccccccccCCCCCCHHHHHHHHHHhCcCCcEEEECcEEEcCcccCCCCCcCcCCHHHHHHHHHHHHH
Confidence 68999999999999963 4788888886 6668999999999888754221 112222 22 3
Q ss_pred cCCCCCCEEEEecCCC--------------------------------------HHHHHHHHHHHHHCCCCEEEecCC--
Q 017176 60 FSPEQHPIVLQIGGSN--------------------------------------LDNLAKATELANAYNYDEINLNCG-- 99 (376)
Q Consensus 60 ~~~~~~p~~vQL~g~~--------------------------------------~~~~~~aa~~~~~~G~d~IeiN~g-- 99 (376)
+|..+.++++||++.. .++|+++|++++++|||+||||++
T Consensus 86 vh~~g~~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~~~~~~~~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~g 165 (327)
T cd02803 86 VHAHGAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSPGGGEPPREMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHG 165 (327)
T ss_pred HHhCCCHhhHHhhCCCcCCCCcCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhh
Confidence 6788888999997420 378999999999999999999998
Q ss_pred -------CCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCC--CccHHHHHHHHHHHhhcCCcc
Q 017176 100 -------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDD--HDSYNQLCDFIYKVSSLSPTR 168 (376)
Q Consensus 100 -------cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~--~~~~~~~~~~i~~~~e~~Gvd 168 (376)
||.. +.|+|+||+++++|++++.|++++|++.+ ++||.||++..... ..+.++..++ ++.+++.|+|
T Consensus 166 yL~~qFlsp~~-n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~l-a~~l~~~G~d 243 (327)
T cd02803 166 YLLSQFLSPYT-NKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEI-AKALEEAGVD 243 (327)
T ss_pred hHHHHhcCccc-cCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHH-HHHHHHcCCC
Confidence 6765 47899999999999999999999999988 67999999874221 1234555554 4566789999
Q ss_pred EEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHhhCCchhh
Q 017176 169 HFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTL 247 (376)
Q Consensus 169 ~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~lf~ 247 (376)
+|+||+++..................++.+.++++.+ ++||+++|+|.|+++++++++ .+||+|++||+++.||+|+.
T Consensus 244 ~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~ladP~l~~ 322 (327)
T cd02803 244 ALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV-KIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLADPDLPN 322 (327)
T ss_pred EEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHC-CCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHhCccHHH
Confidence 9999988643211100000011223456667776654 899999999999999999999 58999999999999999863
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=255.81 Aligned_cols=206 Identities=17% Similarity=0.199 Sum_probs=161.3
Q ss_pred CCCCChHHHHHHHHHhCCCcEEEecceeeccccc--------ccc-----h---hhhh----hccCCCCCCEEEEecCCC
Q 017176 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIY--------QQG-----N---LDRF----LAFSPEQHPIVLQIGGSN 75 (376)
Q Consensus 16 M~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~--------~~~-----~---~~~~----~~~~~~~~p~~vQL~g~~ 75 (376)
|+|.||..|..-... .+|+++.+..+.+.-.+ ..+ . ...+ +..-++..|+++|+.+++
T Consensus 1 mag~~d~~~~~~~~~--~~~~~~lgg~~~d~~t~~a~~~~~~rgr~ef~~~~e~~~~~i~~e~~~~~~~~~vivnv~~~~ 78 (231)
T TIGR00736 1 MAGITDAEFCRKFKD--LFAIVTLGGYNADRATYKASRDIEKRGRKEFSFNLEEFNSYIIEQIKKAESRALVSVNVRFVD 78 (231)
T ss_pred CCCcchHHHHHhcCc--CcCEEEECCccCCHHHHHHHHHHHHcCCcccCcCcccHHHHHHHHHHHHhhcCCEEEEEecCC
Confidence 899999999665432 26788877776552211 110 0 0111 111135669999999999
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHH
Q 017176 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLC 155 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~ 155 (376)
++++.++++.+++ ++|+||||||||++++.+.+. |++|+++|+.+.++++++++ .++||+||+|+++++. +..+
T Consensus 79 ~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~-G~~Ll~dp~~l~~iv~av~~-~~~PVsvKiR~~~~~~-~~~~-- 152 (231)
T TIGR00736 79 LEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGI-GQELLKNKELLKEFLTKMKE-LNKPIFVKIRGNCIPL-DELI-- 152 (231)
T ss_pred HHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCC-chhhcCCHHHHHHHHHHHHc-CCCcEEEEeCCCCCcc-hHHH--
Confidence 9999999999988 699999999999999887775 99999999999999999994 5899999999998652 2223
Q ss_pred HHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEE
Q 017176 156 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 235 (376)
Q Consensus 156 ~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vmi 235 (376)
+++.++++|+|+|+||.+. .|. +...|+.++++++.+.++|||+||||+|++|+.+++++|||+||+
T Consensus 153 --~a~~l~~aGad~i~Vd~~~---~g~--------~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 153 --DALNLVDDGFDGIHVDAMY---PGK--------PYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred --HHHHHHHcCCCEEEEeeCC---CCC--------chhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 3456789999999999654 221 124599999998876459999999999999999999999999999
Q ss_pred chHHhhC
Q 017176 236 GRAAYQN 242 (376)
Q Consensus 236 GRa~l~~ 242 (376)
||+++.+
T Consensus 220 gR~~l~~ 226 (231)
T TIGR00736 220 ARAILKG 226 (231)
T ss_pred cHhhccC
Confidence 9999965
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=268.03 Aligned_cols=240 Identities=18% Similarity=0.183 Sum_probs=180.2
Q ss_pred CCCeecCCcEEEccCCC--------CChHHHHHHH-HHhCCCcEEEecceeeccccccc---------chhhhh---h-c
Q 017176 2 VARQYLPPWFSVAPMMD--------WTDNHYRTLA-RLISKHAWLYTEMLAAETIIYQQ---------GNLDRF---L-A 59 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~--------~td~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~~---------~~~~~~---~-~ 59 (376)
|++++|||||+||||+. .|+...++|. |+.||+|+++||.+.++.-.... ..+..+ . .
T Consensus 12 lg~~~L~NRivmaPm~~~~a~~dG~pt~~~~~yy~~RA~gG~Glii~~~~~v~~~g~~~~~~~~l~~d~~i~~~~~vt~a 91 (363)
T COG1902 12 LGGLTLKNRIVMAPMTRNRATPDGLPTDLLAEYYAERAKGGAGLIITEATAVDPGGRGYPGQPGLWSDAQIPGLKRLTEA 91 (363)
T ss_pred ECCEEeccceeecCcccccccCCCCCCHHHHHHHHHHhcCCCCEEEEeeEeeCcccccCCCCCccCChhHhHHHHHHHHH
Confidence 68999999999999975 4678888885 78889999999987776433211 112222 2 3
Q ss_pred cCCCCCCEEEEecCCC----------------------------------------HHHHHHHHHHHHHCCCCEEEecCC
Q 017176 60 FSPEQHPIVLQIGGSN----------------------------------------LDNLAKATELANAYNYDEINLNCG 99 (376)
Q Consensus 60 ~~~~~~p~~vQL~g~~----------------------------------------~~~~~~aa~~~~~~G~d~IeiN~g 99 (376)
+|..+.++++||.+.. .++|++||++++++|||+||||.+
T Consensus 92 vH~~G~~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~rA~~AGFDgVEIH~A 171 (363)
T COG1902 92 VHAHGAKIFIQLWHAGRKARASHPWLPSAVAPSAIPAPGGRRATPRELTEEEIEEVIEDFARAARRAKEAGFDGVEIHGA 171 (363)
T ss_pred HHhcCCeEEEEeccCcccccccccCCCcccCCCccccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeec
Confidence 6889999999998532 268999999999999999999987
Q ss_pred ---------CCCccccCCCCccccccCCHHHHHHHHHHHhcccCc--cEEEEecCCCC-C--CccHHHHHHHHHHHhhcC
Q 017176 100 ---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV--PVSVKCRIGVD-D--HDSYNQLCDFIYKVSSLS 165 (376)
Q Consensus 100 ---------cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~--pv~vKiR~g~~-~--~~~~~~~~~~i~~~~e~~ 165 (376)
+|.. +.|+|+|||+++||.+++.|||++||+.++. ||.++++..-. . ..+.++... +++.+++.
T Consensus 172 hGYLi~qFlsp~t-N~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~-la~~L~~~ 249 (363)
T COG1902 172 HGYLLSQFLSPLT-NKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVE-LAKALEEA 249 (363)
T ss_pred cchHHHHhcCCcc-CCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHH-HHHHHHhc
Confidence 6775 5899999999999999999999999999854 67777776211 1 124556555 45677889
Q ss_pred C-ccEEEEccCccccCCCCCCCCCCCCcccHHHHH-HHHhhCCCCeEEEecCCCCHHHHHHHHHcC-cCeeEEchHHhhC
Q 017176 166 P-TRHFIIHSRKALLNGISPAENRTIPPLKYEYYY-ALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAAYQN 242 (376)
Q Consensus 166 G-vd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~-~~~~~~~~ipVi~nGgI~s~~da~~~l~~G-ad~VmiGRa~l~~ 242 (376)
| +|+|++.++.....+.... .. +....... .+++. .++|||++|+|+++++++++++.| ||.|.+||++|.|
T Consensus 250 G~~d~i~vs~~~~~~~~~~~~---~~-~~~~~~~a~~i~~~-~~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~lad 324 (363)
T COG1902 250 GLVDYIHVSEGGYERGGTITV---SG-PGYQVEFAARIKKA-VRIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLAD 324 (363)
T ss_pred CCccEEEeecccccCCCCccc---cc-cchhHHHHHHHHHh-cCCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhcC
Confidence 9 7999998765421111000 00 11122222 34443 479999999999999999999965 9999999999999
Q ss_pred CchhhH
Q 017176 243 PWYTLG 248 (376)
Q Consensus 243 P~lf~~ 248 (376)
|+|..+
T Consensus 325 P~~~~k 330 (363)
T COG1902 325 PDLVLK 330 (363)
T ss_pred ccHHHH
Confidence 998643
|
|
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=265.57 Aligned_cols=231 Identities=17% Similarity=0.119 Sum_probs=177.9
Q ss_pred CCCeecCCcEEEccCCC--------CChHHHHHHHHHhCCCcEEEecceeeccccccc---------chh---hhhh-cc
Q 017176 2 VARQYLPPWFSVAPMMD--------WTDNHYRTLARLISKHAWLYTEMLAAETIIYQQ---------GNL---DRFL-AF 60 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~--------~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~---------~~~---~~~~-~~ 60 (376)
|+++++||||++|||.. +|+..++++.+.+.| |+++||.+.+....... ..+ .++. .+
T Consensus 8 ig~~~lkNRiv~apm~~~~~~~~G~~t~~~~~~y~~rA~g-glIi~~~~~v~~~g~~~~~~~~l~~d~~i~~lr~la~~v 86 (338)
T cd02933 8 LGNLTLKNRIVMAPLTRSRADPDGVPTDLMAEYYAQRASA-GLIITEATQISPQGQGYPNTPGIYTDEQVEGWKKVTDAV 86 (338)
T ss_pred eCCEeecCCcEECCCCccccCCCCCCCHHHHHHHHHHhcC-ceEEeCceeeCccccCCCCCCccCCHHHHHHHHHHHHHH
Confidence 68999999999999953 477888888755555 99999998886432211 111 1222 36
Q ss_pred CCCCCCEEEEecCC----------------------------------C---------------HHHHHHHHHHHHHCCC
Q 017176 61 SPEQHPIVLQIGGS----------------------------------N---------------LDNLAKATELANAYNY 91 (376)
Q Consensus 61 ~~~~~p~~vQL~g~----------------------------------~---------------~~~~~~aa~~~~~~G~ 91 (376)
|..+.++++||.+. . .++|++||++++++||
T Consensus 87 h~~ga~~~~QL~H~G~~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGf 166 (338)
T cd02933 87 HAKGGKIFLQLWHVGRVSHPSLLPGGAPPVAPSAIAAEGKVFTPAGKVPYPTPRALTTEEIPGIVADFRQAARNAIEAGF 166 (338)
T ss_pred HhcCCeEEEEcccCccCCCcccccCCCCccCCCCCCCCcccccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88899999998540 0 2689999999999999
Q ss_pred CEEEecCCC---------CCccccCCCCccccccCCHHHHHHHHHHHhcccCc-cEEEEecCCC-----CCCccHHHHHH
Q 017176 92 DEINLNCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV-PVSVKCRIGV-----DDHDSYNQLCD 156 (376)
Q Consensus 92 d~IeiN~gc---------P~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~-pv~vKiR~g~-----~~~~~~~~~~~ 156 (376)
|+||||++| |.. +.|+|+||++|+||.+++.||+++||+.++. +|++|++..- ....+.++.++
T Consensus 167 DgVeih~ahGyLl~qFlSp~~-N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~ 245 (338)
T cd02933 167 DGVEIHGANGYLIDQFLRDGS-NKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSY 245 (338)
T ss_pred CEEEEccccchhHHHhcCCcc-CCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHH
Confidence 999999998 764 4889999999999999999999999998854 8999988631 11134566665
Q ss_pred HHHHHhhcCCccEEEE-ccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeE
Q 017176 157 FIYKVSSLSPTRHFII-HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVM 234 (376)
Q Consensus 157 ~i~~~~e~~Gvd~I~v-h~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~Vm 234 (376)
+ ++.+++.|+|+|+| |++..... ....++...++++. .++|||++|+|. +++++++++ .+||+|+
T Consensus 246 ~-~~~l~~~g~d~i~vs~g~~~~~~----------~~~~~~~~~~ik~~-~~ipvi~~G~i~-~~~a~~~l~~g~~D~V~ 312 (338)
T cd02933 246 L-AKELNKRGLAYLHLVEPRVAGNP----------EDQPPDFLDFLRKA-FKGPLIAAGGYD-AESAEAALADGKADLVA 312 (338)
T ss_pred H-HHHHHHcCCcEEEEecCCCCCcc----------cccchHHHHHHHHH-cCCCEEEECCCC-HHHHHHHHHcCCCCEEE
Confidence 4 55677899999999 45432111 12236666677665 489999999997 999999999 5699999
Q ss_pred EchHHhhCCchhh
Q 017176 235 VGRAAYQNPWYTL 247 (376)
Q Consensus 235 iGRa~l~~P~lf~ 247 (376)
+||++++||||+.
T Consensus 313 ~gR~~ladP~~~~ 325 (338)
T cd02933 313 FGRPFIANPDLVE 325 (338)
T ss_pred eCHhhhhCcCHHH
Confidence 9999999999964
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=267.42 Aligned_cols=234 Identities=18% Similarity=0.173 Sum_probs=178.4
Q ss_pred CCCeecCCcEEEccCCC-------CChHHHHHHH-HHhCCCcEEEecceeecccccc----------cchh---hhhh-c
Q 017176 2 VARQYLPPWFSVAPMMD-------WTDNHYRTLA-RLISKHAWLYTEMLAAETIIYQ----------QGNL---DRFL-A 59 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~-------~td~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~----------~~~~---~~~~-~ 59 (376)
||++++||||+++||.. +|+..+.++. ++.||+|+++||.+.+...... ...+ .++. .
T Consensus 7 ig~~~lkNRiv~spm~~~~~~~G~~t~~~~~yy~~rA~GG~GlIite~~~V~~~~~~~~~~~~~~~~d~~i~~~~~l~d~ 86 (361)
T cd04747 7 LKGLTLPNRIVMAPMTRSFSPGGVPGQDVAAYYRRRAAGGVGLIITEGTAVDHPAASGDPNVPRFHGEDALAGWKKVVDE 86 (361)
T ss_pred ECCEEeeCCeEEcCcccCcCCCCCCCHHHHHHHHHHhcCCccEEEecceEeccccccCCCCCCccCCHHHHHHHHHHHHH
Confidence 68999999999999963 4788898886 6779999999998888522111 0111 1222 2
Q ss_pred cCCCCCCEEEEecCCC----------------------------------------HHHHHHHHHHHHHCCCCEEEecCC
Q 017176 60 FSPEQHPIVLQIGGSN----------------------------------------LDNLAKATELANAYNYDEINLNCG 99 (376)
Q Consensus 60 ~~~~~~p~~vQL~g~~----------------------------------------~~~~~~aa~~~~~~G~d~IeiN~g 99 (376)
+|..+.++++||++.. .++|++||++++++|||+||||++
T Consensus 87 vh~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~~~ps~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~~a~~aGfDgVeih~a 166 (361)
T cd04747 87 VHAAGGKIAPQLWHVGAMRKLGTPPFPDVPPLSPSGLVGPGKPVGREMTEADIDDVIAAFARAAADARRLGFDGIELHGA 166 (361)
T ss_pred HHhcCCEEEEeccCCCCCcCcccCccCCCceeCCCCCCcCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 6888999999996410 258999999999999999999999
Q ss_pred C---------CCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCC--C-----CccHHHHHHHHHHH
Q 017176 100 C---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVD--D-----HDSYNQLCDFIYKV 161 (376)
Q Consensus 100 c---------P~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~--~-----~~~~~~~~~~i~~~ 161 (376)
| |.. +.|+|+||++++||.+++.||+++||+.+ ++||.||++. ++ + ..+.+++.++ ++.
T Consensus 167 hGyLl~qFLSp~~-N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~-~~~~~~~~~~g~~~~e~~~~-~~~ 243 (361)
T cd04747 167 HGYLIDQFFWAGT-NRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQ-WKQQDYTARLADTPDELEAL-LAP 243 (361)
T ss_pred cchHHHHhcCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECc-ccccccccCCCCCHHHHHHH-HHH
Confidence 9 875 48899999999999999999999999998 4799999984 21 1 1345666654 445
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCC------------------CCHHHHH
Q 017176 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI------------------NTVDEVN 223 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI------------------~s~~da~ 223 (376)
+++.|+|+|+|+.+....... ....+.+...+++. .++||+++|+| .|+++++
T Consensus 244 l~~~gvd~i~vs~g~~~~~~~--------~~~~~~~~~~~k~~-~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~ 314 (361)
T cd04747 244 LVDAGVDIFHCSTRRFWEPEF--------EGSELNLAGWTKKL-TGLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLL 314 (361)
T ss_pred HHHcCCCEEEecCCCccCCCc--------CccchhHHHHHHHH-cCCCEEEECCcccccccccccccccccccCCHHHHH
Confidence 678999999887653110000 11123444445444 58999999999 6999999
Q ss_pred HHHH-cCcCeeEEchHHhhCCchhh
Q 017176 224 AALR-KGAHHVMVGRAAYQNPWYTL 247 (376)
Q Consensus 224 ~~l~-~Gad~VmiGRa~l~~P~lf~ 247 (376)
++++ .+||+|++||++++||||+.
T Consensus 315 ~~l~~g~~D~V~~gR~~iadP~~~~ 339 (361)
T cd04747 315 ERLERGEFDLVAVGRALLSDPAWVA 339 (361)
T ss_pred HHHHCCCCCeehhhHHHHhCcHHHH
Confidence 9999 66999999999999999964
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=268.18 Aligned_cols=239 Identities=12% Similarity=0.095 Sum_probs=177.2
Q ss_pred CCCeecCCcEEEccCCC----CChHHHH-HHH-HHhCCCcEEEecceeecccccc----------cchhhh---hh-ccC
Q 017176 2 VARQYLPPWFSVAPMMD----WTDNHYR-TLA-RLISKHAWLYTEMLAAETIIYQ----------QGNLDR---FL-AFS 61 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~----~td~~~r-~~~-~~~Gg~gl~~te~v~~~~~~~~----------~~~~~~---~~-~~~ 61 (376)
|++++|||||++|||.. .++..+. ++. ++.||+|+++||.+.+...... +..+.. +. .+|
T Consensus 14 ig~~~lkNRiv~apm~~~~~~~~~~~~~~y~~~rA~gG~GLIi~e~~~V~~~~~~~~~~~~~l~~d~~i~~~~~l~~~vh 93 (370)
T cd02929 14 IGPVTARNRFYQVPHCNGMGYRKPSAQAAMRGIKAEGGWGVVNTEQCSIHPSSDDTPRISARLWDDGDIRNLAAMTDAVH 93 (370)
T ss_pred CCCEEeccceEECCcccCcCCCChHHHHHHHHHHhCCCceEEEEeeeEEccccccCcccCcCcCCHHHHHHHHHHHHHHH
Confidence 78999999999999963 2334443 444 6889999999998887633211 111222 22 267
Q ss_pred CCCCCEEEEecCC--------------------------C---------------HHHHHHHHHHHHHCCCCEEEecCCC
Q 017176 62 PEQHPIVLQIGGS--------------------------N---------------LDNLAKATELANAYNYDEINLNCGC 100 (376)
Q Consensus 62 ~~~~p~~vQL~g~--------------------------~---------------~~~~~~aa~~~~~~G~d~IeiN~gc 100 (376)
..+.++++||++. . .++|++||++++++|||+||||++|
T Consensus 94 ~~G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVEih~ah 173 (370)
T cd02929 94 KHGALAGIELWHGGAHAPNRESRETPLGPSQLPSEFPTGGPVQAREMDKDDIKRVRRWYVDAALRARDAGFDIVYVYAAH 173 (370)
T ss_pred HCCCeEEEecccCCCCCCccCCCCCccCCCCCCCCccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccc
Confidence 8889999999531 0 2689999999999999999999998
Q ss_pred ---------CCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCC------ccHHHHHHHHHHHhhcC
Q 017176 101 ---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH------DSYNQLCDFIYKVSSLS 165 (376)
Q Consensus 101 ---------P~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~------~~~~~~~~~i~~~~e~~ 165 (376)
|.. +.|+|+||++++||.+++.||+++||+.++.++.|++|++.++. .+.++.++++ +++++.
T Consensus 174 GyLl~QFlSp~~-N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~~-~~l~~~ 251 (370)
T cd02929 174 GYLPLQFLLPRY-NKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEFV-EMLDEL 251 (370)
T ss_pred cchHHHhhCccc-cCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHHH-HHHHhh
Confidence 764 58899999999999999999999999999877888888876542 2456666543 445544
Q ss_pred CccEEEEccCccccCCCCCCCCCCCCcc-cHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHhhCC
Q 017176 166 PTRHFIIHSRKALLNGISPAENRTIPPL-KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNP 243 (376)
Q Consensus 166 Gvd~I~vh~r~~~~~g~~~~~~~~~~~~-~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P 243 (376)
+|++.|+.+.....+.. ....++. .++...++++. +++|||++|+|.++++++++++ .+||+|++||++++||
T Consensus 252 -~D~i~vs~g~~~~~~~~---~~~~~~~~~~~~~~~ik~~-~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP 326 (370)
T cd02929 252 -PDLWDVNVGDWANDGED---SRFYPEGHQEPYIKFVKQV-TSKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIADP 326 (370)
T ss_pred -CCEEEecCCCccccccc---cccCCccccHHHHHHHHHH-CCCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhhCc
Confidence 89999987642211110 0111111 24555566554 5999999999999999999999 6699999999999999
Q ss_pred chhh
Q 017176 244 WYTL 247 (376)
Q Consensus 244 ~lf~ 247 (376)
||+.
T Consensus 327 ~l~~ 330 (370)
T cd02929 327 FLPK 330 (370)
T ss_pred hHHH
Confidence 9964
|
TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine. |
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-32 Score=263.65 Aligned_cols=238 Identities=18% Similarity=0.205 Sum_probs=180.5
Q ss_pred CCCeecCCcEEEccCCC-------CChHHHHHHH-HHhCCCcEEEecceeecccccc---------cchhh---hhh-cc
Q 017176 2 VARQYLPPWFSVAPMMD-------WTDNHYRTLA-RLISKHAWLYTEMLAAETIIYQ---------QGNLD---RFL-AF 60 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~-------~td~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~---------~~~~~---~~~-~~ 60 (376)
||+++|||||++|||.. .|+..+.+|. ++.||+|+++||.+.++..... +..+. ++. .+
T Consensus 7 ig~~~l~NRi~~~pm~~~~~~~g~~~~~~~~~y~~rA~gg~glii~~~~~v~~~~~~~~~~~~~~~d~~~~~~~~l~~~v 86 (336)
T cd02932 7 LRGVTLKNRIVVSPMCQYSAEDGVATDWHLVHYGSRALGGAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALKRIVDFI 86 (336)
T ss_pred ECCEEEeccCEEcccccCcCCCCCCCHHHHHHHHHHHcCCCcEEEEcceEECCCcCCCCCceeecCHHHHHHHHHHHHHH
Confidence 68999999999999953 4778888886 6779999999998887643221 11122 222 26
Q ss_pred CCCCCCEEEEecCC---------------------------------------------------CHHHHHHHHHHHHHC
Q 017176 61 SPEQHPIVLQIGGS---------------------------------------------------NLDNLAKATELANAY 89 (376)
Q Consensus 61 ~~~~~p~~vQL~g~---------------------------------------------------~~~~~~~aa~~~~~~ 89 (376)
|..+.++++||++. -.++|+++|++++++
T Consensus 87 h~~G~~~~~QL~H~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~ii~~~~~aA~~a~~a 166 (336)
T cd02932 87 HSQGAKIGIQLAHAGRKASTAPPWEGGGPLLPPGGGGWQVVAPSAIPFDEGWPTPRELTREEIAEVVDAFVAAARRAVEA 166 (336)
T ss_pred HhcCCcEEEEccCCCcCCCCCCCccccccccccccCCCceeCCCCCcCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHc
Confidence 78889999998531 026899999999999
Q ss_pred CCCEEEecCCC---------CCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCC--CCCCccHHHHHH
Q 017176 90 NYDEINLNCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIG--VDDHDSYNQLCD 156 (376)
Q Consensus 90 G~d~IeiN~gc---------P~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g--~~~~~~~~~~~~ 156 (376)
|||+||||+|| |.. +.|+|+||++|+||++++.+++++||+.+ ++||.+|++.. .+...+.++.++
T Consensus 167 GfDgVei~~~~gyLl~qFlsp~~-N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ 245 (336)
T cd02932 167 GFDVIEIHAAHGYLLHQFLSPLS-NKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVE 245 (336)
T ss_pred CCCEEEEccccccHHHHhcCCcc-CCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHHH
Confidence 99999999987 654 47899999999999999999999999998 68999999852 111123555555
Q ss_pred HHHHHhhcCCccEEEEccCccccCCCCCCCCCCC-CcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHc-CcCeeE
Q 017176 157 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI-PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVM 234 (376)
Q Consensus 157 ~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~-~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~-Gad~Vm 234 (376)
+ ++.+++.|+|+|+||.+..... ..... +...++...++++.+ ++||+++|+|.|+++++++++. .||+||
T Consensus 246 i-a~~Le~~gvd~iev~~g~~~~~-----~~~~~~~~~~~~~~~~ir~~~-~iPVi~~G~i~t~~~a~~~l~~g~aD~V~ 318 (336)
T cd02932 246 L-AKALKELGVDLIDVSSGGNSPA-----QKIPVGPGYQVPFAERIRQEA-GIPVIAVGLITDPEQAEAILESGRADLVA 318 (336)
T ss_pred H-HHHHHHcCCCEEEECCCCCCcc-----cccCCCccccHHHHHHHHhhC-CCCEEEeCCCCCHHHHHHHHHcCCCCeeh
Confidence 4 4556789999999996532100 00011 112245666666654 8999999999999999999995 599999
Q ss_pred EchHHhhCCchhh
Q 017176 235 VGRAAYQNPWYTL 247 (376)
Q Consensus 235 iGRa~l~~P~lf~ 247 (376)
+||+++.||+|+.
T Consensus 319 ~gR~~i~dP~~~~ 331 (336)
T cd02932 319 LGRELLRNPYWPL 331 (336)
T ss_pred hhHHHHhCccHHH
Confidence 9999999999863
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=256.37 Aligned_cols=229 Identities=22% Similarity=0.299 Sum_probs=176.7
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccc-h------------------hhhhhc---
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQG-N------------------LDRFLA--- 59 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~-~------------------~~~~~~--- 59 (376)
+.|++++||+++|.-..-++..++.++.. ||+|.++|++++.+....... . ...+++
T Consensus 4 ~~G~~~~nP~~~aag~~~~~~~~~~~~~~-g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~~~~~~~~~ 82 (296)
T cd04740 4 LAGLRLKNPVILASGTFGFGEELSRVADL-GKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGVEAFLEELL 82 (296)
T ss_pred ECCEEcCCCCEECCCCCCCHHHHHHHHhc-CCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCHHHHHHHHH
Confidence 46899999999984211278888887664 569999999999875432111 1 112221
Q ss_pred --cCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccE
Q 017176 60 --FSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPV 137 (376)
Q Consensus 60 --~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv 137 (376)
.+..+.|+++||+|+++++|+++|++++++|+|+||||++||+.+ +. |+.+.++++++.++++++++.+++||
T Consensus 83 ~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~----~~-g~~~~~~~~~~~eiv~~vr~~~~~Pv 157 (296)
T cd04740 83 PWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVK----GG-GMAFGTDPEAVAEIVKAVKKATDVPV 157 (296)
T ss_pred HHhhcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCC----CC-cccccCCHHHHHHHHHHHHhccCCCE
Confidence 134578999999999999999999999999999999999999853 22 77788999999999999999999999
Q ss_pred EEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCcccc---------------CCCCCCCCCCCCcccHHHHHHHH
Q 017176 138 SVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL---------------NGISPAENRTIPPLKYEYYYALL 202 (376)
Q Consensus 138 ~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~---------------~g~~~~~~~~~~~~~~~~v~~~~ 202 (376)
+||++..++ +..++ ++.++++|+|.|++++++... .|.++ ..+.+..++++++++
T Consensus 158 ~vKl~~~~~---~~~~~----a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg---~~~~~~~~~~i~~i~ 227 (296)
T cd04740 158 IVKLTPNVT---DIVEI----ARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSG---PAIKPIALRMVYQVY 227 (296)
T ss_pred EEEeCCCch---hHHHH----HHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecC---cccchHHHHHHHHHH
Confidence 999987543 23333 345668999999986543210 12221 233455678888888
Q ss_pred hhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchhh
Q 017176 203 RDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247 (376)
Q Consensus 203 ~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~ 247 (376)
+.. ++|||++|||.|++|+.++++.|||+||+||+++.|||+|.
T Consensus 228 ~~~-~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~ 271 (296)
T cd04740 228 KAV-EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFK 271 (296)
T ss_pred Hhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHH
Confidence 765 89999999999999999999999999999999999999863
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-31 Score=280.84 Aligned_cols=243 Identities=18% Similarity=0.200 Sum_probs=184.0
Q ss_pred CCCeecCCcEEEccCCC-------CChHHHHHHH-HHhCCCcEEEecceeecccccc---------cchhh---hhh-cc
Q 017176 2 VARQYLPPWFSVAPMMD-------WTDNHYRTLA-RLISKHAWLYTEMLAAETIIYQ---------QGNLD---RFL-AF 60 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~-------~td~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~---------~~~~~---~~~-~~ 60 (376)
|++++|||||+++||.. .|+.++.++. ++.||+|+|+||.+.+....+. +..+. ++. .+
T Consensus 405 i~~~~l~NRi~~~pm~~~~~~~g~~t~~~~~~y~~rA~gG~glii~e~~~v~~~g~~~~~~~~~~~d~~i~~~~~~~~~v 484 (765)
T PRK08255 405 LRGLTLKNRVVVSPMAMYSAVDGVPGDFHLVHLGARALGGAGLVMTEMTCVSPEGRITPGCPGLYNDEQEAAWKRIVDFV 484 (765)
T ss_pred cCCEeeCCCccccCcccccCCCCCCCHHHHHHHHHHHcCCCcEEEECCeEECCCcCCCCCCCccCCHHHHHHHHHHHHHH
Confidence 68999999999999953 4778888875 7779999999999888644221 11111 222 25
Q ss_pred CCC-CCCEEEEecCC-------------------------------------C------------HHHHHHHHHHHHHCC
Q 017176 61 SPE-QHPIVLQIGGS-------------------------------------N------------LDNLAKATELANAYN 90 (376)
Q Consensus 61 ~~~-~~p~~vQL~g~-------------------------------------~------------~~~~~~aa~~~~~~G 90 (376)
|.. +.++++||++. . .++|++||++++++|
T Consensus 485 h~~gg~~i~~QL~h~Gr~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~~i~~f~~aA~~a~~aG 564 (765)
T PRK08255 485 HANSDAKIGIQLGHSGRKGSTRLGWEGIDEPLEEGNWPLISASPLPYLPGSQVPREMTRADMDRVRDDFVAAARRAAEAG 564 (765)
T ss_pred HhcCCceEEEEccCCcccccccccccccccccccCCCceeCCCCCcCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 777 58999998530 0 268999999999999
Q ss_pred CCEEEecCC---------CCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecC-CCCC-CccHHHHHHH
Q 017176 91 YDEINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRI-GVDD-HDSYNQLCDF 157 (376)
Q Consensus 91 ~d~IeiN~g---------cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~-g~~~-~~~~~~~~~~ 157 (376)
||+||||+| ||.. +.|+|+||++++||.+++.||+++||+.+ ++||++|++. +|.+ ..+.++.+++
T Consensus 565 fDgveih~ahGyLl~qFlsp~~-N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~ 643 (765)
T PRK08255 565 FDWLELHCAHGYLLSSFISPLT-NQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVEI 643 (765)
T ss_pred CCEEEEecccchHHHHhcCCCC-CCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHHHHHH
Confidence 999999999 9996 48899999999999999999999999987 4799999997 3333 2345666654
Q ss_pred HHHHhhcCCccEEEEccCccccCCCCCCCCCCCCccc-HHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEE
Q 017176 158 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK-YEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV 235 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~-~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~Vmi 235 (376)
++.+++.|+|+|+||++...... .+ ...+.. ..+..++++. .++|||++|+|+++++++++++ .+||+||+
T Consensus 644 -~~~l~~~g~d~i~vs~g~~~~~~-~~----~~~~~~~~~~~~~ik~~-~~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~ 716 (765)
T PRK08255 644 -ARAFKAAGADLIDVSSGQVSKDE-KP----VYGRMYQTPFADRIRNE-AGIATIAVGAISEADHVNSIIAAGRADLCAL 716 (765)
T ss_pred -HHHHHhcCCcEEEeCCCCCCcCC-CC----CcCccccHHHHHHHHHH-cCCEEEEeCCCCCHHHHHHHHHcCCcceeeE
Confidence 55678899999999965321100 00 011111 2334455554 5899999999999999999999 77999999
Q ss_pred chHHhhCCchhhHhhhh
Q 017176 236 GRAAYQNPWYTLGHVDT 252 (376)
Q Consensus 236 GRa~l~~P~lf~~~~~~ 252 (376)
||++++||+|.++..+.
T Consensus 717 gR~~l~dP~~~~~~~~~ 733 (765)
T PRK08255 717 ARPHLADPAWTLHEAAE 733 (765)
T ss_pred cHHHHhCccHHHHHHHH
Confidence 99999999776666554
|
|
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=248.11 Aligned_cols=232 Identities=18% Similarity=0.212 Sum_probs=174.4
Q ss_pred CCCeecCCcEEEccCC-CCChHHHHHHHHHhCCCcEEEecceeec-ccccc-cc----------------h--------h
Q 017176 2 VARQYLPPWFSVAPMM-DWTDNHYRTLARLISKHAWLYTEMLAAE-TIIYQ-QG----------------N--------L 54 (376)
Q Consensus 2 i~~~~l~nri~lAPM~-~~td~~~r~~~~~~Gg~gl~~te~v~~~-~~~~~-~~----------------~--------~ 54 (376)
+.+++|+|||++|.-. +-+...++.+... | +|.++|..++.+ ....+ .+ + .
T Consensus 6 ~~Gl~l~nPi~~aag~~~~~~~~~~~~~~~-G-~Gavv~kti~~~~~~~gn~~pr~~~~~~~~~n~~g~~n~e~~s~~~~ 83 (299)
T cd02940 6 FCGIKFPNPFGLASAPPTTSYPMIRRAFEA-G-WGGAVTKTLGLDKDIVTNVSPRIARLRTSGRGQIGFNNIELISEKPL 83 (299)
T ss_pred ECCEEcCCCCEeCCcCCCCCHHHHHHHHHh-C-CCEEEeccccCcCCCCCCCCCeEEEeCCCchhcccccCCccccccCH
Confidence 4689999999999832 2244555665543 4 899999988877 21110 00 0 1
Q ss_pred hhhh----cc-CC-CCCCEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHH
Q 017176 55 DRFL----AF-SP-EQHPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127 (376)
Q Consensus 55 ~~~~----~~-~~-~~~p~~vQL~g~-~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~ 127 (376)
..++ .. .. .+.|+++|++|. ++++|.++|+.++++|+|+||||+|||+.. .+++ +|+.++++++.+.++++
T Consensus 84 ~~~~~~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~-~~~~-~G~~l~~~~~~~~~iv~ 161 (299)
T cd02940 84 EYWLKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGM-PERG-MGAAVGQDPELVEEICR 161 (299)
T ss_pred HHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCC-CCCC-CchhhccCHHHHHHHHH
Confidence 1111 11 11 268999999998 999999999999999999999999999973 4444 59999999999999999
Q ss_pred HHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccc--------------------cCCCCCCCC
Q 017176 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL--------------------LNGISPAEN 187 (376)
Q Consensus 128 ~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~--------------------~~g~~~~~~ 187 (376)
++++.+++||+||+|++.+ ++.++ ++.++++|+|.|+++.+... .+|+++
T Consensus 162 ~v~~~~~~Pv~vKl~~~~~---~~~~~----a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG--- 231 (299)
T cd02940 162 WVREAVKIPVIAKLTPNIT---DIREI----ARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSG--- 231 (299)
T ss_pred HHHHhcCCCeEEECCCCch---hHHHH----HHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccC---
Confidence 9999999999999998543 23333 34456899999986433211 123333
Q ss_pred CCCCcccHHHHHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh-CCchhh
Q 017176 188 RTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ-NPWYTL 247 (376)
Q Consensus 188 ~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~-~P~lf~ 247 (376)
+.+.|..|+.++++++... ++|||+||||.|++|+.+++.+|||+|||||+++. .|.++.
T Consensus 232 ~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~~g~~~~~ 293 (299)
T cd02940 232 PAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMNQGFTIVD 293 (299)
T ss_pred CCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEceeecccCCcHHH
Confidence 3455667999999988752 79999999999999999999999999999999998 798864
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside [] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-31 Score=258.40 Aligned_cols=243 Identities=16% Similarity=0.163 Sum_probs=166.6
Q ss_pred CCCeecCCcEEEccCCC--------CCh-HHHHHHH-HHhCCCcEEEecceeeccccccc---------chhh---hhh-
Q 017176 2 VARQYLPPWFSVAPMMD--------WTD-NHYRTLA-RLISKHAWLYTEMLAAETIIYQQ---------GNLD---RFL- 58 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~--------~td-~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~~---------~~~~---~~~- 58 (376)
||+++|||||++|||.. +++ ..++++. |+.||+|+++||.+.++...... ..+. ++.
T Consensus 8 ig~~~lkNRiv~apm~~~~~~~~g~~~~~~~~~yy~~rA~GG~Glii~~~~~v~~~~~~~~~~~~i~~d~~i~~~k~l~~ 87 (341)
T PF00724_consen 8 IGNLTLKNRIVMAPMTTNMADPDGGVPTDRLIAYYERRAKGGAGLIITEATAVSPEGRGFPGQPGIWDDEQIPGLKKLAD 87 (341)
T ss_dssp ETTEEESSSEEE----SSTSCTTTTBCHHHHHHHHHHHHHTTTSEEEEEEEESSGGGSSSTTSEBSSSHHHHHHHHHHHH
T ss_pred ECCEEecCCeEECCCCCCCcccCCCCcHHHHHHHHHHHhhcCCceEEecccccccccccccccchhchhhHHHHHHHHHH
Confidence 68999999999999964 344 6677775 78899999999999988543321 1111 122
Q ss_pred ccCCCCCCEEEEecCCC-------------------------------------------HHHHHHHHHHHHHCCCCEEE
Q 017176 59 AFSPEQHPIVLQIGGSN-------------------------------------------LDNLAKATELANAYNYDEIN 95 (376)
Q Consensus 59 ~~~~~~~p~~vQL~g~~-------------------------------------------~~~~~~aa~~~~~~G~d~Ie 95 (376)
.+|..+.++++||++.. .++|++||++++++|||+||
T Consensus 88 ~vh~~Ga~i~~QL~H~G~~~~~~~~~~~~~~psa~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~~A~~AGfDGVE 167 (341)
T PF00724_consen 88 AVHAHGAKIIAQLWHAGRQANPEYSGDPPVGPSAPSALPSPIKFMGYPPREMTEEEIEEIIEDFAQAARRAKEAGFDGVE 167 (341)
T ss_dssp HHHHTTSEEEEEEE--GGGSSGCCSGGGCEESSCSSSSSTTTTETSCEEEE--HHHHHHHHHHHHHHHHHHHHTT-SEEE
T ss_pred HHHhcCccceeeccccccccCcccCCCCccCcccccccCcccccCCCCCeeCCHHHHHHHHHHHHHHHHHHHHhccCeEe
Confidence 36888999999997520 26899999999999999999
Q ss_pred ecCC---------CCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCC--CCccHHHHHHHHHHHh
Q 017176 96 LNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVD--DHDSYNQLCDFIYKVS 162 (376)
Q Consensus 96 iN~g---------cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~--~~~~~~~~~~~i~~~~ 162 (376)
||++ +|.. |.|+|+|||+++||.+++.|||++||+.+ ++||.+|+...-. ...+.++..+ +++++
T Consensus 168 IH~ahGyLl~qFLSp~~-N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~~~e~~~-~~~~~ 245 (341)
T PF00724_consen 168 IHAAHGYLLSQFLSPLT-NRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFVEGGITLEETIE-IAKLL 245 (341)
T ss_dssp EEESTTSHHHHHHSTTT----SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHHSHHHHH-HHHHH
T ss_pred ecccchhhhhheeeecc-CCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecccCCCCchHHHHH-HHHHH
Confidence 9987 5764 58999999999999999999999999987 4677777776211 1122445543 34566
Q ss_pred hcCCccEEEEccCcccc--CCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHH
Q 017176 163 SLSPTRHFIIHSRKALL--NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAA 239 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~--~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~ 239 (376)
++.|+|.+.++...... .....................+++ .+++|||++|+|.+++.++++++ ..||+|.+||++
T Consensus 246 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~-~~~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~ 324 (341)
T PF00724_consen 246 EELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKK-AVKIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPL 324 (341)
T ss_dssp HHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHH-HHSSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHH
T ss_pred HHHhhhhccccccccccccccccccccccccchhhhhhhhhhh-hcCceEEEEeeecchhhhHHHHhcCCceEeeccHHH
Confidence 77889988765432110 000000000111111234444444 45899999999999999999999 669999999999
Q ss_pred hhCCchhh
Q 017176 240 YQNPWYTL 247 (376)
Q Consensus 240 l~~P~lf~ 247 (376)
++||+|..
T Consensus 325 ladPd~~~ 332 (341)
T PF00724_consen 325 LADPDLPN 332 (341)
T ss_dssp HH-TTHHH
T ss_pred HhCchHHH
Confidence 99999864
|
It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A .... |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=244.04 Aligned_cols=231 Identities=20% Similarity=0.273 Sum_probs=172.4
Q ss_pred CCCeecCCcEEEcc-CCCCChHHHHHHHHHhCCCcEEEecceeeccccccc-------------------chhhhhhc--
Q 017176 2 VARQYLPPWFSVAP-MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQ-------------------GNLDRFLA-- 59 (376)
Q Consensus 2 i~~~~l~nri~lAP-M~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~-------------------~~~~~~~~-- 59 (376)
+.|++|+||+++|. +.+.+. .+...+... |+|.++|..++.+...... ...+.+++
T Consensus 6 ~~G~~~~nPv~~aag~~~~~~-~~~~~~~~~-g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~g~~~~~~~~ 83 (301)
T PRK07259 6 LPGLKLKNPVMPASGTFGFGG-EYARFYDLN-GLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNPGVDAFIEEE 83 (301)
T ss_pred ECCEECCCCcEECCcCCCCCH-HHHHHhhhc-CCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCcCHHHHHHHH
Confidence 46899999999997 455555 444434444 4899999988766422110 01112221
Q ss_pred ---cCCCCCCEEEEecCCCHHHHHHHHHHHHHCC-CCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCc
Q 017176 60 ---FSPEQHPIVLQIGGSNLDNLAKATELANAYN-YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135 (376)
Q Consensus 60 ---~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G-~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~ 135 (376)
....+.|+++||+|+++++|+++|++++++| +|+||||++||+.. ++ |..+.++++++.+++++|++.+++
T Consensus 84 ~~~~~~~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~----~g-g~~~~~~~~~~~eiv~~vr~~~~~ 158 (301)
T PRK07259 84 LPWLEEFDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVK----HG-GMAFGTDPELAYEVVKAVKEVVKV 158 (301)
T ss_pred HHHHhccCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCC----CC-ccccccCHHHHHHHHHHHHHhcCC
Confidence 1234689999999999999999999999999 99999999999842 22 677889999999999999999999
Q ss_pred cEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccC------------CCCCCCCCCCCcccHHHHHHHHh
Q 017176 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN------------GISPAENRTIPPLKYEYYYALLR 203 (376)
Q Consensus 136 pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~------------g~~~~~~~~~~~~~~~~v~~~~~ 203 (376)
||+||++...+ +..+ +++.++++|+|.|++++++.... +..+.....+.+..+++++++++
T Consensus 159 pv~vKl~~~~~---~~~~----~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~ 231 (301)
T PRK07259 159 PVIVKLTPNVT---DIVE----IAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQ 231 (301)
T ss_pred CEEEEcCCCch---hHHH----HHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHH
Confidence 99999997543 2223 34556789999999865432100 00111123345566888888887
Q ss_pred hCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchhh
Q 017176 204 DFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247 (376)
Q Consensus 204 ~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~ 247 (376)
.+ ++|||++|||.|++|+.++++.|||+||+||+++.+|++|.
T Consensus 232 ~~-~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~ 274 (301)
T PRK07259 232 AV-DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFP 274 (301)
T ss_pred hC-CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHH
Confidence 65 89999999999999999999999999999999999999864
|
|
| >KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=239.92 Aligned_cols=271 Identities=21% Similarity=0.331 Sum_probs=214.1
Q ss_pred CCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhh----------------hhhccCCCCCC
Q 017176 3 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLD----------------RFLAFSPEQHP 66 (376)
Q Consensus 3 ~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~----------------~~~~~~~~~~p 66 (376)
..+...|.+++|||+.+++.+.|.++-++| ++++|||-+....++....... -+.....+...
T Consensus 5 ~~l~y~nk~iLApMvr~G~lpmrLLal~~G-adlv~~peIVdkKLIe~ir~~NealgtIDfv~p~~~~vvfr~~~~e~~r 83 (477)
T KOG2334|consen 5 SSLFYRNKLILAPMVRAGELPMRLLALQYG-ADLVYTPEIVDKKLIECIRVENEALGTIDFVDPSDSTVVFRTCPAENSR 83 (477)
T ss_pred hhhhhcCcEeeehHHHhccchHHHHHHHhc-cceecChhhhhHHHHhccccccccccceeeecCCcceEEEEechhhcCe
Confidence 345678999999999999999999999997 8999999888777765432111 11112334557
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCC
Q 017176 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD 146 (376)
Q Consensus 67 ~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~ 146 (376)
+++|++.++++--.++|+.+..- ..+||+|||||-..-+ +++.|++|+.+|+.+..|+.++.+...+|+++|||+ .+
T Consensus 84 lilQ~gT~sa~lA~e~A~lv~nD-vsgidiN~gCpK~fSi-~~gmgaalLt~~dkl~~IL~sLvk~~~vpvtckIR~-L~ 160 (477)
T KOG2334|consen 84 LILQIGTASAELALEAAKLVDND-VSGIDINMGCPKEFSI-HGGMGAALLTDPDKLVAILYSLVKGNKVPVTCKIRL-LD 160 (477)
T ss_pred EEEEecCCcHHHHHHHHHHhhcc-cccccccCCCCCcccc-ccCCCchhhcCHHHHHHHHHHHHhcCcccceeEEEe-cC
Confidence 99999999999999999988774 6899999999987655 455799999999999999999999999999999996 44
Q ss_pred CCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCC---HHHHH
Q 017176 147 DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT---VDEVN 223 (376)
Q Consensus 147 ~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s---~~da~ 223 (376)
+.++. ++.+.+ +.+.|+.+|+||+|+... +...|..-++++++....+.||||.||++.+ ..|++
T Consensus 161 s~edt---L~lv~r-i~~tgi~ai~vh~rt~d~--------r~~~~~~~~~i~~i~~~~~~V~vi~ng~~~~~e~y~Di~ 228 (477)
T KOG2334|consen 161 SKEDT---LKLVKR-ICATGIAAITVHCRTRDE--------RNQEPATKDYIREIAQACQMVPVIVNGGSMDIEQYSDIE 228 (477)
T ss_pred CcccH---HHHHHH-HHhcCCceEEEEeecccc--------CCCCCCCHHHHHHHHHHhccceEeeccchhhHHhhhhHH
Confidence 43433 333333 357999999999998532 2234445677888877766699999999999 66777
Q ss_pred HHHH-cCcCeeEEchHHhhCCchhhHhhhhhhhCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh
Q 017176 224 AALR-KGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHF 299 (376)
Q Consensus 224 ~~l~-~Gad~VmiGRa~l~~P~lf~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y 299 (376)
...+ +|+|+||++|++..||.+|.. .| ..++.+.++.|++++..+.++|++.+..+..+......+
T Consensus 229 ~~~~~~~~~~vmiAR~A~~n~SiF~~------eG----~~~~~~~~~~fl~~a~~~dn~~~ntkycl~~il~~~~~~ 295 (477)
T KOG2334|consen 229 DFQEKTGADSVMIARAAESNPSIFRE------EG----CLSEKEVIREFLRLAVQYDNHYGNTKYCLQRILRGIQEG 295 (477)
T ss_pred HHHHHhccchhhhhHhhhcCCceeee------cC----CchHHHHHHHHHHHHHHHhhcccchhHHHHHHhhhhhcc
Confidence 7777 899999999999999999853 23 356788999999999999999999787777666555444
|
|
| >PLN02411 12-oxophytodienoate reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-29 Score=247.58 Aligned_cols=241 Identities=18% Similarity=0.160 Sum_probs=167.8
Q ss_pred CCCeecCCcEEEccCCC-------CChHHHHHHH-HHhCCCcEEEecceeeccccccc---------chhh---hhh-cc
Q 017176 2 VARQYLPPWFSVAPMMD-------WTDNHYRTLA-RLISKHAWLYTEMLAAETIIYQQ---------GNLD---RFL-AF 60 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~-------~td~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~~---------~~~~---~~~-~~ 60 (376)
||+++|||||++|||.. +|+....++. |+.|| |+++||.+.++...... ..+. ++. .+
T Consensus 18 ig~~~lkNRiv~aPm~~~~~~dG~~t~~~~~yy~~rA~gG-GLIIte~~~V~~~g~~~~~~~gi~~d~~i~~~~~l~~av 96 (391)
T PLN02411 18 MGRFDLSHRVVLAPMTRCRALNGIPNAALAEYYAQRSTPG-GFLISEGTLISPTAPGFPHVPGIYSDEQVEAWKKVVDAV 96 (391)
T ss_pred ECCEEEcccCEECCcCcCcCCCCCCCHHHHHHHHHHHcCC-CEEEeCceEECcccCcCCCCCccCCHHHHHHHHHHHHHH
Confidence 68899999999999964 4788888886 66787 99999998887432211 1111 222 36
Q ss_pred CCCCCCEEEEecCC----------------------------------------C------------HHHHHHHHHHHHH
Q 017176 61 SPEQHPIVLQIGGS----------------------------------------N------------LDNLAKATELANA 88 (376)
Q Consensus 61 ~~~~~p~~vQL~g~----------------------------------------~------------~~~~~~aa~~~~~ 88 (376)
|..+.++++||++. . .++|++||+++++
T Consensus 97 H~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~rA~~ 176 (391)
T PLN02411 97 HAKGSIIFCQLWHVGRASHQVYQPGGAAPISSTNKPISERWRILMPDGSYGKYPKPRALETSEIPEVVEHYRQAALNAIR 176 (391)
T ss_pred HhcCCEEEEeccCCCCCCccccccCCCCccCCccccccCCcccccCCccccCCCCCccCCHHHHHHHHHHHHHHHHHHHH
Confidence 88888899998520 0 2689999999999
Q ss_pred CCCCEEEecCC---------CCCccccCCCCccccccCCHHHHHHHHHHHhcccCc-cEEEEecCCC-----CCCccHHH
Q 017176 89 YNYDEINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV-PVSVKCRIGV-----DDHDSYNQ 153 (376)
Q Consensus 89 ~G~d~IeiN~g---------cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~-pv~vKiR~g~-----~~~~~~~~ 153 (376)
+|||+||||++ +|.. |.|+|+|||+++||.+++.|||++||++++. .|.+|++..- .+....++
T Consensus 177 AGFDGVEIH~AhGYLl~QFLSp~t-N~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~~~~~~~~ 255 (391)
T PLN02411 177 AGFDGIEIHGAHGYLIDQFLKDGI-NDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDHLDATDSDPLNL 255 (391)
T ss_pred cCCCEEEEccccchHHHHhCCCcc-CCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEcccccccCCCCCcchhh
Confidence 99999999987 5775 5899999999999999999999999999853 4777776421 11112222
Q ss_pred ---HHHHHHHHhhcC--CccEEEEccCccccCCCCCCCCCCCCcccHH-HHHHHHhhCCCCeEEEecCCCCHHHHHHHHH
Q 017176 154 ---LCDFIYKVSSLS--PTRHFIIHSRKALLNGISPAENRTIPPLKYE-YYYALLRDFPDLTFTLNGGINTVDEVNAALR 227 (376)
Q Consensus 154 ---~~~~i~~~~e~~--Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~-~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~ 227 (376)
+++.+..+.... |+|+|+|+.+.....+..... ....+..+. +..++++ ..++|||++|+| +.++++++++
T Consensus 256 ~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~-~~~~~~~~~~~a~~ik~-~v~~pvi~~G~i-~~~~a~~~l~ 332 (391)
T PLN02411 256 GLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESG-RHGSEEEEAQLMRTLRR-AYQGTFMCSGGF-TRELGMQAVQ 332 (391)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCccc-ccCCccchhHHHHHHHH-HcCCCEEEECCC-CHHHHHHHHH
Confidence 333333222123 599999987642111100000 000111122 3344444 458999999999 6799999999
Q ss_pred cC-cCeeEEchHHhhCCchhh
Q 017176 228 KG-AHHVMVGRAAYQNPWYTL 247 (376)
Q Consensus 228 ~G-ad~VmiGRa~l~~P~lf~ 247 (376)
.| ||+|.+||++++||+|..
T Consensus 333 ~g~aDlV~~gR~~iadPdl~~ 353 (391)
T PLN02411 333 QGDADLVSYGRLFISNPDLVL 353 (391)
T ss_pred cCCCCEEEECHHHHhCccHHH
Confidence 55 999999999999999864
|
|
| >PRK10605 N-ethylmaleimide reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-29 Score=244.90 Aligned_cols=231 Identities=15% Similarity=0.123 Sum_probs=171.0
Q ss_pred CCCeecCCcEEEccCCC---------CChHHHHHHHHHhCCCcEEEecceeeccccccc---------chhh---hhh-c
Q 017176 2 VARQYLPPWFSVAPMMD---------WTDNHYRTLARLISKHAWLYTEMLAAETIIYQQ---------GNLD---RFL-A 59 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~---------~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~---------~~~~---~~~-~ 59 (376)
||++++||||++|||.. .|+..++++.+.+| +|+++||.+.++...... ..+. ++. .
T Consensus 9 ig~~~lkNRiv~apm~~~~~~~~~g~~t~~~~~~y~~rAg-~GLIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~lad~ 87 (362)
T PRK10605 9 VGAITAPNRVFMAPLTRLRSIEPGDIPTPLMAEYYRQRAS-AGLIISEATQISAQAKGYAGAPGLHSPEQIAAWKKITAG 87 (362)
T ss_pred ECCEEeccccEECCcCcCccCCCCCCCCHHHHHHHHHHhC-CCEEEECceeeCcccccCCCCCcccCHHHHHHHHHHHHH
Confidence 68999999999999963 26678888876664 999999998886432211 1111 222 3
Q ss_pred cCCCCCCEEEEecCC------------------------------------------C------------HHHHHHHHHH
Q 017176 60 FSPEQHPIVLQIGGS------------------------------------------N------------LDNLAKATEL 85 (376)
Q Consensus 60 ~~~~~~p~~vQL~g~------------------------------------------~------------~~~~~~aa~~ 85 (376)
+|..+.++++||++. . .++|++||++
T Consensus 88 vH~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~r 167 (362)
T PRK10605 88 VHAEGGHIAVQLWHTGRISHASLQPGGQAPVAPSAINAGTRTSLRDENGQAIRVETSTPRALELEEIPGIVNDFRQAIAN 167 (362)
T ss_pred HHhCCCEEEEeccCCCCCCCcccCCCCCCeECCCCcCcCcccccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHH
Confidence 688889999998641 0 2689999999
Q ss_pred HHHCCCCEEEecCC---------CCCccccCCCCccccccCCHHHHHHHHHHHhcccCc-cEEEEecCC-----CCCCcc
Q 017176 86 ANAYNYDEINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV-PVSVKCRIG-----VDDHDS 150 (376)
Q Consensus 86 ~~~~G~d~IeiN~g---------cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~-pv~vKiR~g-----~~~~~~ 150 (376)
++++|||+||||++ +|.. |.|+|+|||+++||.+++.|||++||+.++. .|.+|+..- .+...+
T Consensus 168 A~~AGfDGVEIh~ahGyLl~qFLSp~~-N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~ 246 (362)
T PRK10605 168 AREAGFDLVELHSAHGYLLHQFLSPSS-NQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPN 246 (362)
T ss_pred HHHcCCCEEEEcccccchHHHhcCCcC-CCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccccCCCCCC
Confidence 99999999999987 5764 5899999999999999999999999999853 466666541 111234
Q ss_pred HHH-HHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcC
Q 017176 151 YNQ-LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG 229 (376)
Q Consensus 151 ~~~-~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~G 229 (376)
.+| .+++ ++.+++.|+|+|+|+.+... .+ .+.......++++. +++||+++|++ |++.++++++.|
T Consensus 247 ~~e~~~~~-~~~L~~~giD~i~vs~~~~~-~~---------~~~~~~~~~~ik~~-~~~pv~~~G~~-~~~~ae~~i~~G 313 (362)
T PRK10605 247 EEADALYL-IEQLGKRGIAYLHMSEPDWA-GG---------EPYSDAFREKVRAR-FHGVIIGAGAY-TAEKAETLIGKG 313 (362)
T ss_pred HHHHHHHH-HHHHHHcCCCEEEecccccc-CC---------ccccHHHHHHHHHH-CCCCEEEeCCC-CHHHHHHHHHcC
Confidence 566 4554 55667899999999864311 00 01112333445444 48999999996 999999999954
Q ss_pred -cCeeEEchHHhhCCchhh
Q 017176 230 -AHHVMVGRAAYQNPWYTL 247 (376)
Q Consensus 230 -ad~VmiGRa~l~~P~lf~ 247 (376)
||+|++||++++||+|+.
T Consensus 314 ~~D~V~~gR~~iadPd~~~ 332 (362)
T PRK10605 314 LIDAVAFGRDYIANPDLVA 332 (362)
T ss_pred CCCEEEECHHhhhCccHHH
Confidence 999999999999999863
|
|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-29 Score=237.27 Aligned_cols=234 Identities=19% Similarity=0.207 Sum_probs=175.1
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeeccccccc-c---------------------------h
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQ-G---------------------------N 53 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~-~---------------------------~ 53 (376)
+.|++|+||+++|.....++..+.......| +|.++|..++.++...+. + .
T Consensus 3 ~~G~~~~nPv~~aag~~~~~~~~~~~~~~~g-~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~~g~~~~g 81 (289)
T cd02810 3 FLGLKLKNPFGVAAGPLLKTGELIARAAAAG-FGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNSFGLPNLG 81 (289)
T ss_pred ECCEECCCCCEeCCCCCCCCHHHHHHHHHcC-CCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeecCCCCCcC
Confidence 3589999999999877755666555454554 899999988866331110 0 0
Q ss_pred hhhhh----cc-CC-CCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHH
Q 017176 54 LDRFL----AF-SP-EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127 (376)
Q Consensus 54 ~~~~~----~~-~~-~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~ 127 (376)
.+.++ .. +. .+.|+++||.|++++++.++++.++++|+|+||||++||+... |..++++++.+.++++
T Consensus 82 ~~~~~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~------~~~~~~~~~~~~eiv~ 155 (289)
T cd02810 82 LDVWLQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGG------GRQLGQDPEAVANLLK 155 (289)
T ss_pred HHHHHHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCC------CcccccCHHHHHHHHH
Confidence 11111 11 22 4789999999999999999999999999999999999998531 4447899999999999
Q ss_pred HHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccC------------CCCCCCCCCCCcccH
Q 017176 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN------------GISPAENRTIPPLKY 195 (376)
Q Consensus 128 ~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~------------g~~~~~~~~~~~~~~ 195 (376)
++++.+++||+||++.+++. + ++.+ +++.++++|+|+|++|+++.... +..+.....+.+..+
T Consensus 156 ~vr~~~~~pv~vKl~~~~~~-~---~~~~-~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~ 230 (289)
T cd02810 156 AVKAAVDIPLLVKLSPYFDL-E---DIVE-LAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLAL 230 (289)
T ss_pred HHHHccCCCEEEEeCCCCCH-H---HHHH-HHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHH
Confidence 99999999999999987653 2 3333 24456789999999998753110 000001112334457
Q ss_pred HHHHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC-Cchhh
Q 017176 196 EYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYTL 247 (376)
Q Consensus 196 ~~v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~-P~lf~ 247 (376)
++++++++.++ ++|||++|||.|++|+.++++.|||+||+||+++.| ||+|.
T Consensus 231 ~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~~~~GP~~~~ 284 (289)
T cd02810 231 RWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATALMWDGPDVIR 284 (289)
T ss_pred HHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHHHhcCccHHH
Confidence 78888887765 899999999999999999999999999999999999 99974
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-28 Score=244.13 Aligned_cols=229 Identities=18% Similarity=0.194 Sum_probs=171.9
Q ss_pred CCCeecCCcEEEccCCC-CChHHHHHHHHHhCCCcEEEecceeeccccccc-ch------------------------hh
Q 017176 2 VARQYLPPWFSVAPMMD-WTDNHYRTLARLISKHAWLYTEMLAAETIIYQQ-GN------------------------LD 55 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~-~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~-~~------------------------~~ 55 (376)
+.|++|+|||++|.-.. .+...++.+.. . |+|.++|..++ ....... +. ..
T Consensus 8 ~~Gl~l~nPv~~aag~~~~~~~~~~~~~~-~-g~Gavv~kti~-~~~gn~~~pr~~~~~~~~~~~~g~~n~~~~s~~~~~ 84 (420)
T PRK08318 8 FCGIKSPNPFWLASAPPTNKYYNVARAFE-A-GWGGVVWKTLG-PPIVNVSSPRFGALVKEDRRFIGFNNIELITDRPLE 84 (420)
T ss_pred ECCEecCCCcEeCCcCCCCCHHHHHHHHH-h-CCCEEEEeecC-CCCCCCCCCeEEEecCCCcccccccCcccccccCHH
Confidence 45899999999995422 23445555554 4 48888888776 3221111 00 01
Q ss_pred hhh----cc--CCCCCCEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHH
Q 017176 56 RFL----AF--SPEQHPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 128 (376)
Q Consensus 56 ~~~----~~--~~~~~p~~vQL~g~-~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~ 128 (376)
.++ .. ...+.|+++||+|. +++++.++|+.++++|+|+||||++||+ ++..++ +|+.++++++.+.+|+++
T Consensus 85 ~~~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~-~~~~~~-~g~~~~~~~~~~~~i~~~ 162 (420)
T PRK08318 85 VNLREIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPH-GMSERG-MGSAVGQVPELVEMYTRW 162 (420)
T ss_pred HHHHHHHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-CccccC-CcccccCCHHHHHHHHHH
Confidence 111 11 11257899999999 9999999999999999999999999999 445445 599999999999999999
Q ss_pred HhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEE---------------------ccCccccCCCCCCCC
Q 017176 129 IAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII---------------------HSRKALLNGISPAEN 187 (376)
Q Consensus 129 v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~v---------------------h~r~~~~~g~~~~~~ 187 (376)
+++.+++||+||+|+..++ +.++ +++++++|+|.|++ |+++. .+|+++
T Consensus 163 v~~~~~~Pv~vKl~p~~~~---~~~~----a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~-~gg~SG--- 231 (420)
T PRK08318 163 VKRGSRLPVIVKLTPNITD---IREP----ARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSS-HGGYCG--- 231 (420)
T ss_pred HHhccCCcEEEEcCCCccc---HHHH----HHHHHHCCCCEEEEecccCccccccccccCCCceecCCCC-cccccc---
Confidence 9999999999999975443 3333 45667899999994 33321 223333
Q ss_pred CCCCcccHHHHHHHHhhC--CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh-CCchh
Q 017176 188 RTIPPLKYEYYYALLRDF--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ-NPWYT 246 (376)
Q Consensus 188 ~~~~~~~~~~v~~~~~~~--~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~-~P~lf 246 (376)
..+.|..|+.++++++.. .++|||++|||.|++|+.+++.+|||+||||||++. .|.++
T Consensus 232 ~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~~gp~ii 293 (420)
T PRK08318 232 PAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQYGFRIV 293 (420)
T ss_pred hhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeeeeeccCCchhH
Confidence 345677799999998865 279999999999999999999999999999999998 68775
|
|
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=228.77 Aligned_cols=233 Identities=19% Similarity=0.173 Sum_probs=168.7
Q ss_pred CCCeecCCcEEEccCC-CCChHHHHHHHHHhCCCcEEEecceeecccccc-------------------cchhhhhh---
Q 017176 2 VARQYLPPWFSVAPMM-DWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ-------------------QGNLDRFL--- 58 (376)
Q Consensus 2 i~~~~l~nri~lAPM~-~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~-------------------~~~~~~~~--- 58 (376)
+.|++|+||+++|.-. +-+...++.+.. . |+|.+.|..++.++...+ +...+.++
T Consensus 3 ~~Gl~l~nPi~~Asg~~~~~~e~~~~~~~-~-G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~~~~~~~i 80 (294)
T cd04741 3 PPGLTISPPLMNAAGPWCTTLEDLLELAA-S-STGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGLDYYLEYI 80 (294)
T ss_pred cCCeeCCCCCEECCCCCCCCHHHHHHHHH-c-CCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCHHHHHHHH
Confidence 4689999999999765 344455666544 4 589999988876533211 01111111
Q ss_pred -cc----CCCCCCEEEEecCCCHHHHHHHHHHHHHC---CCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHh
Q 017176 59 -AF----SPEQHPIVLQIGGSNLDNLAKATELANAY---NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130 (376)
Q Consensus 59 -~~----~~~~~p~~vQL~g~~~~~~~~aa~~~~~~---G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~ 130 (376)
.. +..+.|+++||+|+ ++++.++++.+++. |+|+||||++||+.. + +..+..+++.+.+++++++
T Consensus 81 ~~~~~~~~~~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~----~--~~~~~~~~~~~~~i~~~v~ 153 (294)
T cd04741 81 RTISDGLPGSAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVP----G--KPPPAYDFDATLEYLTAVK 153 (294)
T ss_pred HHHhhhccccCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCC----C--cccccCCHHHHHHHHHHHH
Confidence 11 12578999999999 99999999988875 699999999999842 1 2345679999999999999
Q ss_pred cccCccEEEEecCCCCCCccHHHHHHHHHHHhhcC--CccEEEE----------cc-Ccc-cc---CCCCCCCCCCCCcc
Q 017176 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLS--PTRHFII----------HS-RKA-LL---NGISPAENRTIPPL 193 (376)
Q Consensus 131 ~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~--Gvd~I~v----------h~-r~~-~~---~g~~~~~~~~~~~~ 193 (376)
+.+++||+||+|++++. .++.++ ++.+.++ |+|.|++ |. |+. .. .++++...+.+.+.
T Consensus 154 ~~~~iPv~vKl~p~~~~-~~~~~~----a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~ 228 (294)
T cd04741 154 AAYSIPVGVKTPPYTDP-AQFDTL----AEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPL 228 (294)
T ss_pred HhcCCCEEEEeCCCCCH-HHHHHH----HHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHH
Confidence 99999999999998743 223333 3344566 9999995 43 221 11 12222222345555
Q ss_pred cHHHHHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh-CCchhhH
Q 017176 194 KYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ-NPWYTLG 248 (376)
Q Consensus 194 ~~~~v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~-~P~lf~~ 248 (376)
.+..++++++... ++|||++|||.|++|+.+++.+|||+||+||+++. +||+|.+
T Consensus 229 al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~~gp~~~~~ 285 (294)
T cd04741 229 ALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGKEGPKVFAR 285 (294)
T ss_pred HHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhhcCchHHHH
Confidence 6777788877764 59999999999999999999999999999999995 9999743
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.4e-26 Score=218.67 Aligned_cols=227 Identities=14% Similarity=0.115 Sum_probs=164.7
Q ss_pred CCCeecCCcEEEccCC-CCChHHHHHHHHHhCCCcEEEecceeeccccc---c------------------------cch
Q 017176 2 VARQYLPPWFSVAPMM-DWTDNHYRTLARLISKHAWLYTEMLAAETIIY---Q------------------------QGN 53 (376)
Q Consensus 2 i~~~~l~nri~lAPM~-~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~---~------------------------~~~ 53 (376)
+.|++|+||+++|.=. +.+...++. +... |+|.++|..++.++..+ . +..
T Consensus 6 ~~Gl~l~nPv~~ASg~~~~~~e~~~~-~~~~-G~Gavv~ktit~~~~~~~gn~~pr~~~~~~~~~~~~~~in~~g~~n~g 83 (325)
T cd04739 6 YLGLSLKNPLVASASPLSRNLDNIRR-LEDA-GAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSYFPEYGRYNLG 83 (325)
T ss_pred ECCEecCCCCEeCCcCCCCCHHHHHH-HHHC-CCcEEEecccchhhhhhcCCCCCceEeecccCcCcccccccccccCcC
Confidence 4689999999997322 234445555 3344 48888888877553110 0 000
Q ss_pred hhhhh----cc-CCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHH
Q 017176 54 LDRFL----AF-SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 128 (376)
Q Consensus 54 ~~~~~----~~-~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~ 128 (376)
.+.++ .. ...+.|+++||+|+++++|.++++.++++|+|+||||++||..+ .+.+|+.+ ++.+.+++++
T Consensus 84 ~~~~~~~i~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~---~~~~g~~~---~~~~~eiv~~ 157 (325)
T cd04739 84 PEEYLELIRRAKRAVSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTD---PDISGAEV---EQRYLDILRA 157 (325)
T ss_pred HHHHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCC---CCcccchH---HHHHHHHHHH
Confidence 11111 11 12368999999999999999999999999999999999996422 24457654 4678999999
Q ss_pred HhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCcccc------------CCCCCCCCCCCCcccHH
Q 017176 129 IAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL------------NGISPAENRTIPPLKYE 196 (376)
Q Consensus 129 v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~------------~g~~~~~~~~~~~~~~~ 196 (376)
+++.+++||+||+++.+++ +.++ ++.++++|+|+|++|++.... .|.++ ..+.+..++
T Consensus 158 v~~~~~iPv~vKl~p~~~~---~~~~----a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG---~~~~~~al~ 227 (325)
T cd04739 158 VKSAVTIPVAVKLSPFFSA---LAHM----AKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSS---PAEIRLPLR 227 (325)
T ss_pred HHhccCCCEEEEcCCCccC---HHHH----HHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCC---ccchhHHHH
Confidence 9999999999999986542 3333 345668999999999986211 11111 233445577
Q ss_pred HHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC-Cchhh
Q 017176 197 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYTL 247 (376)
Q Consensus 197 ~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~-P~lf~ 247 (376)
+++++.+.. ++|||++|||.|++|+.+++.+|||+||+||+++.+ |.++.
T Consensus 228 ~v~~v~~~~-~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~gp~~~~ 278 (325)
T cd04739 228 WIAILSGRV-KASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRHGPDYIG 278 (325)
T ss_pred HHHHHHccc-CCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhcCchHHH
Confidence 888887754 899999999999999999999999999999999995 98753
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-26 Score=221.14 Aligned_cols=229 Identities=16% Similarity=0.199 Sum_probs=166.8
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccc-cc--------------------cchhhhhh--
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETII-YQ--------------------QGNLDRFL-- 58 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~-~~--------------------~~~~~~~~-- 58 (376)
+.|++++||+++|.-..-+...++.+. .. |+|.+.|..++.++-. .. +...+.++
T Consensus 43 ~~Gl~l~nPi~~AsG~~~~~~~~~~~~-~~-G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~~~~ 120 (327)
T cd04738 43 VFGLTFPNPVGLAAGFDKNAEAIDALL-AL-GFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKR 120 (327)
T ss_pred ECCEECCCCCEeCcCCCCCHHHHHHHH-HC-CCcEEEEeccCCCCCCCCCCCCEEEccCccceeecCCCCCccHHHHHHH
Confidence 468999999999864333334455544 44 5899999888765211 10 00111111
Q ss_pred --ccCCCCCCEEEEecCCC-------HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHH
Q 017176 59 --AFSPEQHPIVLQIGGSN-------LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI 129 (376)
Q Consensus 59 --~~~~~~~p~~vQL~g~~-------~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v 129 (376)
.....+.|+++||+|++ .++|++.++.+.+. +|+||||++||+.. |.....+++.+.+++++|
T Consensus 121 l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~-ad~ielN~scP~~~-------g~~~~~~~~~~~~iv~av 192 (327)
T cd04738 121 LKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPY-ADYLVVNVSSPNTP-------GLRDLQGKEALRELLTAV 192 (327)
T ss_pred HHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhh-CCEEEEECCCCCCC-------ccccccCHHHHHHHHHHH
Confidence 11224689999999987 68899998888764 89999999999853 233468999999999999
Q ss_pred hcccC-----ccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCcccc------------CCCCCCCCCCCCc
Q 017176 130 AANTN-----VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL------------NGISPAENRTIPP 192 (376)
Q Consensus 130 ~~~~~-----~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~------------~g~~~~~~~~~~~ 192 (376)
++.++ +||+||++.++++ +++.+ +++.++++|+|+|++|+++... +|+++ ..+.+
T Consensus 193 ~~~~~~~~~~~Pv~vKl~~~~~~-~~~~~----ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG---~~~~~ 264 (327)
T cd04738 193 KEERNKLGKKVPLLVKIAPDLSD-EELED----IADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSG---APLKE 264 (327)
T ss_pred HHHHhhcccCCCeEEEeCCCCCH-HHHHH----HHHHHHHcCCcEEEEECCcccccccccccccCCCCccCC---hhhhH
Confidence 99886 9999999987653 22333 3456778999999999976321 12222 23344
Q ss_pred ccHHHHHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC-CchhhH
Q 017176 193 LKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYTLG 248 (376)
Q Consensus 193 ~~~~~v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~-P~lf~~ 248 (376)
..++.++++++... ++|||++|||.|++|+.+++.+|||+|||||+++.+ ||+|.+
T Consensus 265 ~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~~gP~~~~~ 322 (327)
T cd04738 265 RSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVYEGPGLVKR 322 (327)
T ss_pred HHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhccHHHHhhCcHHHHH
Confidence 55788888877653 799999999999999999999999999999999886 998743
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=219.16 Aligned_cols=227 Identities=16% Similarity=0.186 Sum_probs=165.6
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccc-ccc--------------------chhhhhh--
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETII-YQQ--------------------GNLDRFL-- 58 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~-~~~--------------------~~~~~~~-- 58 (376)
+.|++|+||+++|.-..-+...++. +... |+|.+.|..++.+.-. ... ...+.++
T Consensus 53 ~~Gl~l~nPi~~AsG~~~~~~~~~~-~~~~-G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~~~~ 130 (344)
T PRK05286 53 VMGLTFPNPVGLAAGFDKNGEAIDA-LGAL-GFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADALAER 130 (344)
T ss_pred ECCEECCCCCEECCCCCCChHHHHH-HHHc-CCCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCCCCHhHHHHHHH
Confidence 3589999999998643323334444 3444 4899999988865221 110 0111121
Q ss_pred --ccCCCCCCEEEEecCC-------CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHH
Q 017176 59 --AFSPEQHPIVLQIGGS-------NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI 129 (376)
Q Consensus 59 --~~~~~~~p~~vQL~g~-------~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v 129 (376)
+.. .+.|++++|.++ ..++|++.++.+.+ ++|+||+|++||+.+ |.....+++.+.+++++|
T Consensus 131 l~~~~-~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~-------g~~~~~~~~~~~eiv~aV 201 (344)
T PRK05286 131 LKKAY-RGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTP-------GLRDLQYGEALDELLAAL 201 (344)
T ss_pred HHHhc-CCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCC-------CcccccCHHHHHHHHHHH
Confidence 112 467999999886 57899999998876 589999999999864 222368999999999999
Q ss_pred hcccC-----ccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCcccc------------CCCCCCCCCCCCc
Q 017176 130 AANTN-----VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL------------NGISPAENRTIPP 192 (376)
Q Consensus 130 ~~~~~-----~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~------------~g~~~~~~~~~~~ 192 (376)
++.++ +||+||++.++++ +++.+ +++.++++|+|+|++|+++... +|.++ ..+.+
T Consensus 202 r~~~~~~~~~~PV~vKlsp~~~~-~~~~~----ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG---~~~~~ 273 (344)
T PRK05286 202 KEAQAELHGYVPLLVKIAPDLSD-EELDD----IADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSG---RPLFE 273 (344)
T ss_pred HHHHhccccCCceEEEeCCCCCH-HHHHH----HHHHHHHhCCcEEEEeCCccccccccccccCCCCCCccc---HHHHH
Confidence 99887 9999999987653 22333 3456678999999999986321 12221 23345
Q ss_pred ccHHHHHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC-Cchhh
Q 017176 193 LKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYTL 247 (376)
Q Consensus 193 ~~~~~v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~-P~lf~ 247 (376)
..+++++++++... ++|||++|||.|++|+.+++.+|||+||+||+++.+ ||+|.
T Consensus 274 ~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~ 330 (344)
T PRK05286 274 RSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVK 330 (344)
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHH
Confidence 56778888877653 699999999999999999999999999999999875 99863
|
|
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=211.06 Aligned_cols=226 Identities=14% Similarity=0.101 Sum_probs=162.5
Q ss_pred CCCeecCCcEEEccCCC-CChHHHHHHHHHhCCCcEEEecceeeccccc----------------------------ccc
Q 017176 2 VARQYLPPWFSVAPMMD-WTDNHYRTLARLISKHAWLYTEMLAAETIIY----------------------------QQG 52 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~-~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~----------------------------~~~ 52 (376)
+.|++|+||+++|.-.. .+...++. +... |+|.++|..++.++... .+.
T Consensus 7 ~~Gl~l~nPv~~asg~~~~~~~~~~~-~~~~-g~Gavv~kti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~gl~n~ 84 (334)
T PRK07565 7 YLGLTLRNPLVASASPLSESVDNVKR-LEDA-GAGAVVLKSLFEEQIRHEAAELDRHLTHGTESFAEALDYFPEPAKFYV 84 (334)
T ss_pred ECCEecCCCCEecCcCCCCCHHHHHH-HHHC-CCeEEEEeeCCHHHhhccccccccccccCCCcchhhhhhhhhhhccCc
Confidence 46899999998875433 34445555 3344 48888888776432200 000
Q ss_pred hhhhhh----cc-CCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHH
Q 017176 53 NLDRFL----AF-SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127 (376)
Q Consensus 53 ~~~~~~----~~-~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~ 127 (376)
..+.++ .. ...+.|+++|++|.+++++.++++.++++|+|+||||++||... .+.+|.. ..+.+.++++
T Consensus 85 g~d~~~~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~---~~~~g~~---~~~~~~eil~ 158 (334)
T PRK07565 85 GPEEYLELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTD---PDISGAE---VEQRYLDILR 158 (334)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCC---CCCcccc---HHHHHHHHHH
Confidence 111111 11 22358999999999999999999999999999999999997643 2333532 3456889999
Q ss_pred HHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCcccc------------CCCCCCCCCCCCcccH
Q 017176 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL------------NGISPAENRTIPPLKY 195 (376)
Q Consensus 128 ~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~------------~g~~~~~~~~~~~~~~ 195 (376)
++++.+++||+||++.++++ +.++ ++.++++|+|+|++|++.... .|.++ ..+.+..+
T Consensus 159 ~v~~~~~iPV~vKl~p~~~~---~~~~----a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg---~~~~~~al 228 (334)
T PRK07565 159 AVKSAVSIPVAVKLSPYFSN---LANM----AKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLST---PAELRLPL 228 (334)
T ss_pred HHHhccCCcEEEEeCCCchh---HHHH----HHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCC---chhhhHHH
Confidence 99999999999999986542 3333 445678999999999885211 01111 23344456
Q ss_pred HHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC-Cchh
Q 017176 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYT 246 (376)
Q Consensus 196 ~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~-P~lf 246 (376)
+.++++.+.. ++|||++|||+|++|+.+++.+|||+|||||+++.+ |.++
T Consensus 229 ~~v~~~~~~~-~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~g~~~~ 279 (334)
T PRK07565 229 RWIAILSGRV-GADLAATTGVHDAEDVIKMLLAGADVVMIASALLRHGPDYI 279 (334)
T ss_pred HHHHHHHhhc-CCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhhhCcHHH
Confidence 7788877764 899999999999999999999999999999999996 8764
|
|
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-23 Score=203.99 Aligned_cols=234 Identities=16% Similarity=0.148 Sum_probs=168.9
Q ss_pred CCCeecCCcEEEccCCCCChHHH-HHHHHHhCCCcEEEecceeecc-c-ccc-----------------------cc---
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHY-RTLARLISKHAWLYTEMLAAET-I-IYQ-----------------------QG--- 52 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~-r~~~~~~Gg~gl~~te~v~~~~-~-~~~-----------------------~~--- 52 (376)
+.|++|+||+++|.-...++.+. +++.. .| +|-++|..++.+. . ... +.
T Consensus 15 ~~Gl~l~NP~i~ASgp~t~~~e~~~~~~~-~g-~GAVV~KTi~~~~~~~~n~~pr~~~~~~g~~~~~~~n~iGl~N~~~~ 92 (385)
T PLN02495 15 VNGLKMPNPFVIGSGPPGTNYTVMKRAFD-EG-WGGVIAKTVSLDASKVINVTPRYARLRAGANGSAKGRVIGWQNIELI 92 (385)
T ss_pred ECCEEcCCCcEeCCccCCCCHHHHHHHHh-cC-CeEEEeccccCCccccCCCCCeEEecCcccccccccccccccCcccc
Confidence 46899999999995544445555 55443 34 8888887766332 0 000 00
Q ss_pred ---hhhhhh----ccC-C-CCCCEEEEecC-CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHH
Q 017176 53 ---NLDRFL----AFS-P-EQHPIVLQIGG-SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFV 122 (376)
Q Consensus 53 ---~~~~~~----~~~-~-~~~p~~vQL~g-~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~ 122 (376)
..+.++ ... + .+.|++++|.+ .++++|.+.+++++++|+|+||||++||+....+. .|..+.++++.+
T Consensus 93 s~~g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~--~g~~~gq~~e~~ 170 (385)
T PLN02495 93 SDRPFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERK--MGAAVGQDCDLL 170 (385)
T ss_pred cccCHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCc--cchhhccCHHHH
Confidence 112222 121 2 25799999977 89999999999999999999999999999754443 488899999999
Q ss_pred HHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccc------c-----------CCCCCC
Q 017176 123 GEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL------L-----------NGISPA 185 (376)
Q Consensus 123 ~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~------~-----------~g~~~~ 185 (376)
.+++++|++.+.+||.||+.+.+++ +.+ +++.++++|+|.|++..+... . .+.++-
T Consensus 171 ~~i~~~Vk~~~~iPv~vKLsPn~t~---i~~----ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGl 243 (385)
T PLN02495 171 EEVCGWINAKATVPVWAKMTPNITD---ITQ----PARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGY 243 (385)
T ss_pred HHHHHHHHHhhcCceEEEeCCChhh---HHH----HHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCc
Confidence 9999999999999999999986554 333 345566899999998654320 0 011111
Q ss_pred CCCCCCcccHHHHHHHHhhCC-----CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC-Cchh
Q 017176 186 ENRTIPPLKYEYYYALLRDFP-----DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYT 246 (376)
Q Consensus 186 ~~~~~~~~~~~~v~~~~~~~~-----~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~-P~lf 246 (376)
.+..+.|..+..++++.+... ++|||++|||.|++|+.+++..||+.||++++++.+ |.++
T Consensus 244 SG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~~Gp~vi 310 (385)
T PLN02495 244 SSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVCTGVMMHGYPLV 310 (385)
T ss_pred cchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEeeeeeecCcHHH
Confidence 123355555556666666532 599999999999999999999999999999999999 8875
|
|
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=194.95 Aligned_cols=194 Identities=15% Similarity=0.133 Sum_probs=144.4
Q ss_pred CCeecCCcEEEccCCCCC------hHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCC-C
Q 017176 3 ARQYLPPWFSVAPMMDWT------DNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGS-N 75 (376)
Q Consensus 3 ~~~~l~nri~lAPM~~~t------d~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~-~ 75 (376)
.+.+++.|+++|||++.+ +..++..+.++| ..++++++... ..+.+... .+.|+++||++. +
T Consensus 59 lg~~~~~Pi~iapm~g~~~~~~~~~~~la~aa~~~g-~~~~~~~~~~~--------~~~~i~~~--~~~~~~~ql~~~~~ 127 (299)
T cd02809 59 LGQKLAMPFGIAPTGLQGLAHPDGELATARAAAAAG-IPFTLSTVSTT--------SLEEVAAA--APGPRWFQLYVPRD 127 (299)
T ss_pred CCeecCCCeeeCcccccccCCchHHHHHHHHHHHcC-CCEEecCCCcC--------CHHHHHHh--cCCCeEEEEeecCC
Confidence 466788999999998764 568888888887 45666665521 11222222 237999999986 8
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHH
Q 017176 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLC 155 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~ 155 (376)
++.+.++++.+++.|+|+|++|++||..... ...++++++++.++.||++|.... .++
T Consensus 128 ~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~--------------~~~~~i~~l~~~~~~pvivK~v~s------~~~-- 185 (299)
T cd02809 128 REITEDLLRRAEAAGYKALVLTVDTPVLGRR--------------LTWDDLAWLRSQWKGPLILKGILT------PED-- 185 (299)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCCCCC--------------CCHHHHHHHHHhcCCCEEEeecCC------HHH--
Confidence 9999999999999999999999999975311 244778888888889999996532 222
Q ss_pred HHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeE
Q 017176 156 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVM 234 (376)
Q Consensus 156 ~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~Vm 234 (376)
++.++++|+|+|+||++...... ..+..++.+.++++... ++|||++|||+++.|+.+++..|||+||
T Consensus 186 ---a~~a~~~G~d~I~v~~~gG~~~~--------~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ 254 (299)
T cd02809 186 ---ALRAVDAGADGIVVSNHGGRQLD--------GAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVL 254 (299)
T ss_pred ---HHHHHHCCCCEEEEcCCCCCCCC--------CCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 23456899999999764321110 11234788888877654 6999999999999999999999999999
Q ss_pred EchHHh
Q 017176 235 VGRAAY 240 (376)
Q Consensus 235 iGRa~l 240 (376)
+||+++
T Consensus 255 ig~~~l 260 (299)
T cd02809 255 IGRPFL 260 (299)
T ss_pred EcHHHH
Confidence 999443
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >PRK02506 dihydroorotate dehydrogenase 1A; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-22 Score=193.98 Aligned_cols=233 Identities=16% Similarity=0.136 Sum_probs=166.9
Q ss_pred CCCeecCCcEEEccCCC-CChHHHHHHHHHhCCCcEEEecceeecccccc-------------------cchhhhhh---
Q 017176 2 VARQYLPPWFSVAPMMD-WTDNHYRTLARLISKHAWLYTEMLAAETIIYQ-------------------QGNLDRFL--- 58 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~-~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~-------------------~~~~~~~~--- 58 (376)
+.+++|+||+++|.-.. .+...++. +...| +|.+.|..++.+....+ +...+.++
T Consensus 6 ~~Gl~l~NPv~~AsG~~~~~~e~~~~-~~~~g-~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~n~g~~~~~~~i 83 (310)
T PRK02506 6 IAGFKFDNCLMNAAGVYCMTKEELEE-VEASA-AGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLPNLGFDYYLDYV 83 (310)
T ss_pred ECCEECCCCCEeCCCCCCCCHHHHHH-HHHcC-CcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCCCcCHHHHHHHH
Confidence 46899999999997655 34555665 44454 89999988876632110 01111111
Q ss_pred -ccCC--CCCCEEEEecCCCHHHHHHHHHHHHHCC-CCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC
Q 017176 59 -AFSP--EQHPIVLQIGGSNLDNLAKATELANAYN-YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN 134 (376)
Q Consensus 59 -~~~~--~~~p~~vQL~g~~~~~~~~aa~~~~~~G-~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~ 134 (376)
.... .+.|++++|.|.+++++.+.|+.++++| +|+||||++||+.. . +..+-.+++.+.+++++|++.+.
T Consensus 84 ~~~~~~~~~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~--~----~~~~g~d~~~~~~i~~~v~~~~~ 157 (310)
T PRK02506 84 LELQKKGPNKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVP--G----KPQIAYDFETTEQILEEVFTYFT 157 (310)
T ss_pred HHHHhhcCCCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCC--C----ccccccCHHHHHHHHHHHHHhcC
Confidence 1112 3589999999999999999999999998 89999999999842 1 33334689999999999999999
Q ss_pred ccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEcc------------Cccc---cCCCCCCCCCCCCcccHHHHH
Q 017176 135 VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS------------RKAL---LNGISPAENRTIPPLKYEYYY 199 (376)
Q Consensus 135 ~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~------------r~~~---~~g~~~~~~~~~~~~~~~~v~ 199 (376)
+||.||+++.++. . ++.+. +..+.+.|++.|+.-. ++.. ..+.++-.++.+.|.....++
T Consensus 158 ~Pv~vKlsp~~~~-~---~~a~~-~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~ 232 (310)
T PRK02506 158 KPLGVKLPPYFDI-V---HFDQA-AAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVR 232 (310)
T ss_pred CccEEecCCCCCH-H---HHHHH-HHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHHHHHHH
Confidence 9999999997632 2 33322 2233456777654332 1111 111222233567777788888
Q ss_pred HHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh-CCchhh
Q 017176 200 ALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ-NPWYTL 247 (376)
Q Consensus 200 ~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~-~P~lf~ 247 (376)
++.+... ++|||++|||.|.+|+.+++..|||+||++++++. +|.+|.
T Consensus 233 ~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~~gp~~~~ 282 (310)
T PRK02506 233 AFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHKEGPAVFE 282 (310)
T ss_pred HHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHHhChHHHH
Confidence 8887763 79999999999999999999999999999999998 698863
|
|
| >COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-22 Score=189.36 Aligned_cols=228 Identities=23% Similarity=0.300 Sum_probs=170.8
Q ss_pred CCCeecCCcEEEccCCCC-ChHHHHHHHHHhCCCcEEEecceeeccccccc-c--------------------hhhhhhc
Q 017176 2 VARQYLPPWFSVAPMMDW-TDNHYRTLARLISKHAWLYTEMLAAETIIYQQ-G--------------------NLDRFLA 59 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~-td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~-~--------------------~~~~~~~ 59 (376)
+-|+++|||+++|.-... +...++.+. +.| +|.+.|..++.++..... + ..+.+++
T Consensus 6 ~~Gl~f~NPl~lAaG~~~~~~~~~~~~~-~~g-~G~i~~ktvt~~pq~Gnp~PR~~~l~~~~~~iN~mG~~N~G~~~~~~ 83 (310)
T COG0167 6 ILGLKFPNPLGLAAGFDGKNGEELDALA-ALG-FGAIVTKTVTPEPQEGNPKPRLFRLPEDEGLINRMGFNNPGADAFLE 83 (310)
T ss_pred ecceecCCCCeEcccCCccCHHHHHHHH-hcC-CceEEecCCCCcCCCCCCCCeEEEecCcccHHHhcCCCchhHHHHHH
Confidence 458999999999876653 344444443 344 788888888876322111 0 0111111
Q ss_pred ----cC----CCCCCEEEEecCCCHHHHHHHHHHHHHCC-CCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHh
Q 017176 60 ----FS----PEQHPIVLQIGGSNLDNLAKATELANAYN-YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130 (376)
Q Consensus 60 ----~~----~~~~p~~vQL~g~~~~~~~~aa~~~~~~G-~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~ 130 (376)
.. +.+.+++.+..+...+++.+.+..+++++ +|+||+|.+||+.+ + |.++-.+++.+.+++++++
T Consensus 84 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt~----g--~~~l~~~~e~l~~l~~~vk 157 (310)
T COG0167 84 ELKLAKYEGKPIGVNIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCPNTP----G--GRALGQDPELLEKLLEAVK 157 (310)
T ss_pred HHHhhhhccCCcCcceEEecCCCcHHHHHHHHHHHHhcCCCCEEEEEccCCCCC----C--hhhhccCHHHHHHHHHHHH
Confidence 11 23456888888889999999999999998 89999999999843 2 6677789999999999999
Q ss_pred cccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCcc----------------ccCCCCCCCCCCCCccc
Q 017176 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA----------------LLNGISPAENRTIPPLK 194 (376)
Q Consensus 131 ~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~----------------~~~g~~~~~~~~~~~~~ 194 (376)
+.+.+||.||+.+.+ +++.+ +++.++++|+|.|++...+. ..+|.| .+.+.|..
T Consensus 158 ~~~~~Pv~vKl~P~~---~di~~----iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLS---G~~ikp~a 227 (310)
T COG0167 158 AATKVPVFVKLAPNI---TDIDE----IAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLS---GPPLKPIA 227 (310)
T ss_pred hcccCceEEEeCCCH---HHHHH----HHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcC---cccchHHH
Confidence 999999999999832 23333 35566789999999864221 122333 35677777
Q ss_pred HHHHHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC-Cchhh
Q 017176 195 YEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYTL 247 (376)
Q Consensus 195 ~~~v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~-P~lf~ 247 (376)
...++++.++.. ++|||++|||.|++||.+.+..||++||+|++++.+ |++|.
T Consensus 228 l~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~ 282 (310)
T COG0167 228 LRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPGIVK 282 (310)
T ss_pred HHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeeeeCchHHH
Confidence 889999988752 599999999999999999999999999999999999 99963
|
|
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-21 Score=189.63 Aligned_cols=228 Identities=15% Similarity=0.165 Sum_probs=164.5
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccc-cccc--------------------hhhhhhc-
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETII-YQQG--------------------NLDRFLA- 59 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~-~~~~--------------------~~~~~~~- 59 (376)
+.|++|+|||++|.-..-+...++.+. .. |+|.+.+..++.++-. ...+ ..+.+++
T Consensus 50 ~~Gl~l~NPi~lAsG~~~~~~~~~~~~-~~-G~Gavv~kTvt~~p~~gn~~Pr~~~~~~~~~~iN~~Gl~n~G~~~~l~~ 127 (335)
T TIGR01036 50 VLGLKFPNPLGLAAGFDKDGEAIDALG-AM-GFGFLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNNHGADVLVER 127 (335)
T ss_pred ECCEECCCCcEeCCccCCCHHHHHHHH-hc-CCCEEEeCCcCCCCCCCCCCCCEEECccccccccCCCCCChhHHHHHHH
Confidence 357999999999765433334455544 34 5899999988865221 1100 1111111
Q ss_pred --cCCCCCCEEEEecCC-------CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHh
Q 017176 60 --FSPEQHPIVLQIGGS-------NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130 (376)
Q Consensus 60 --~~~~~~p~~vQL~g~-------~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~ 130 (376)
-++.+.|+++++.++ ..++|++.++.+.+ .+|+||||.+||+.. |.....+++.+.+++++|+
T Consensus 128 i~~~~~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~-~ad~iElNlScPn~~-------~~~~~~~~~~~~~i~~~V~ 199 (335)
T TIGR01036 128 LKRARYKGPIGINIGKNKDTPSEDAKEDYAACLRKLGP-LADYLVVNVSSPNTP-------GLRDLQYKAELRDLLTAVK 199 (335)
T ss_pred HhhccCCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhh-hCCEEEEEccCCCCC-------CcccccCHHHHHHHHHHHH
Confidence 134467999999876 57899999998887 489999999999852 2333478999999999999
Q ss_pred cccC-------ccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCcc------------ccCCCCCCCCCCCC
Q 017176 131 ANTN-------VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA------------LLNGISPAENRTIP 191 (376)
Q Consensus 131 ~~~~-------~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~------------~~~g~~~~~~~~~~ 191 (376)
+.++ +||.||+.+.+++ +++.++ ++.++++|+|.|++..+.. ..+|.|+ ..+.
T Consensus 200 ~~~~~~~~~~~~Pv~vKLsP~~~~-~~i~~i----a~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG---~~i~ 271 (335)
T TIGR01036 200 QEQDGLRRVHRVPVLVKIAPDLTE-SDLEDI----ADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSG---KPLQ 271 (335)
T ss_pred HHHHhhhhccCCceEEEeCCCCCH-HHHHHH----HHHHHHhCCcEEEEECCCCccccccCccccCCCCcccC---HHHH
Confidence 8876 9999999997653 234443 4455689999999876432 1223333 3455
Q ss_pred cccHHHHHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC-Cchhh
Q 017176 192 PLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYTL 247 (376)
Q Consensus 192 ~~~~~~v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~-P~lf~ 247 (376)
+....+++++.+... ++|||++|||.|++|+.+++..|||+||+||+++.+ |+++.
T Consensus 272 p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~~Gp~~~~ 329 (335)
T TIGR01036 272 DKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIYWGPPLVK 329 (335)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHHhCchHHH
Confidence 556777888777654 699999999999999999999999999999999885 99863
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=5e-21 Score=186.80 Aligned_cols=182 Identities=16% Similarity=0.227 Sum_probs=142.5
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecC--CCHHHH
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG--SNLDNL 79 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g--~~~~~~ 79 (376)
|+++.+++|+++|||+++||.+||.+|+++||.|+ ++++++.+...+. .++.+||++ ++++.
T Consensus 38 i~~~~l~~PivlAPMagVtd~~fr~~~~~~Galgv-----vsaegl~~~~~~~----------~~~~~QI~g~~~~~~~- 101 (369)
T TIGR01304 38 IDAYRFELPFIAHPMDALVSPEFAIELGELGGLGV-----LNLEGLWGRHEDP----------DPAIAKIAEAYEEGDQ- 101 (369)
T ss_pred EcceecCCceeecCCCcccCHHHHHHHHHcCCccc-----ccchHHHhcCCCH----------HHHHHHHhhcCCChHH-
Confidence 57788999999999999999999999999997777 6777766544332 345599999 56666
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHH
Q 017176 80 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 159 (376)
Q Consensus 80 ~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~ 159 (376)
+++++++++.+++. .+|+++.++++++++.. |+||+|++.. ...+++
T Consensus 102 a~aa~~~~e~~~~~-----------------------~~p~l~~~ii~~vr~a~---VtvkiRl~~~---~~~e~a---- 148 (369)
T TIGR01304 102 AAATRLLQELHAAP-----------------------LKPELLGERIAEVRDSG---VITAVRVSPQ---NAREIA---- 148 (369)
T ss_pred HHHHHHHHHcCCCc-----------------------cChHHHHHHHHHHHhcc---eEEEEecCCc---CHHHHH----
Confidence 89999999987654 36899999999999863 9999999532 344443
Q ss_pred HHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHH
Q 017176 160 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~ 239 (376)
++++++|+|.|++|+|+..+...++. ..|..+.+++++. ++|||+ |+|.|.+++.+++++|||+||+||+.
T Consensus 149 ~~l~eAGad~I~ihgrt~~q~~~sg~-------~~p~~l~~~i~~~-~IPVI~-G~V~t~e~A~~~~~aGaDgV~~G~gg 219 (369)
T TIGR01304 149 PIVVKAGADLLVIQGTLVSAEHVSTS-------GEPLNLKEFIGEL-DVPVIA-GGVNDYTTALHLMRTGAAGVIVGPGG 219 (369)
T ss_pred HHHHHCCCCEEEEeccchhhhccCCC-------CCHHHHHHHHHHC-CCCEEE-eCCCCHHHHHHHHHcCCCEEEECCCC
Confidence 34568999999999998543221111 1266677777765 899998 99999999999999999999999987
Q ss_pred hh
Q 017176 240 YQ 241 (376)
Q Consensus 240 l~ 241 (376)
-.
T Consensus 220 ~~ 221 (369)
T TIGR01304 220 AN 221 (369)
T ss_pred Cc
Confidence 54
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-20 Score=179.95 Aligned_cols=229 Identities=19% Similarity=0.277 Sum_probs=156.1
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccc-cc--------------------hhhhhh--
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ-QG--------------------NLDRFL-- 58 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~-~~--------------------~~~~~~-- 58 (376)
+.|++++||+++|.-..-+...++.+ ...| +|.++|..++.++.... .+ ..+.++
T Consensus 6 ~~Gl~l~nPi~~asG~~~~~~~~~~~-~~~G-~Gavv~ksvt~~~~~gn~~pr~~~~~~~~~~~n~~G~~n~g~~~~~~~ 83 (295)
T PF01180_consen 6 FCGLTLKNPIGLASGLDKNGEEIKRL-FDAG-FGAVVTKSVTPEPREGNPEPRIFRLPEGESILNSMGLPNPGLEYYLER 83 (295)
T ss_dssp ETTEEESSSEEE-TTSSTSSHHHHHH-HHHS-SSEEEEEEE-SSGB--SSSS-EEEETTETEEEE---S-BSHHHHHHHH
T ss_pred ECCEEcCCCcEECCcCCCCchhhhhh-hcCC-ccEEEeccccccccccccCCcEEeeccccccccccCCChHHHHHHHHH
Confidence 46899999999985322223344443 3556 89999998887543211 00 011111
Q ss_pred --c---cCC--CCCCEEEEecCCC---HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHH
Q 017176 59 --A---FSP--EQHPIVLQIGGSN---LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 128 (376)
Q Consensus 59 --~---~~~--~~~p~~vQL~g~~---~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~ 128 (376)
. ... ...|+++++.+.. .++|.+.++.++ .|+|+||||++||+.. .+..+..+++...++++.
T Consensus 84 ~~~~~~~~~~~~~~pvi~Si~~~~~~~~~d~~~~a~~~~-~~ad~lElN~ScPn~~------~~~~~~~~~~~~~~i~~~ 156 (295)
T PF01180_consen 84 LRPILKEAKKDVDIPVIASINGDSEEEIEDWAELAKRLE-AGADALELNLSCPNVP------GGRPFGQDPELVAEIVRA 156 (295)
T ss_dssp HHHTHHHTTCH-CEEEEEEE-TSSSGHHHHHHHHHHHHH-HHCSEEEEESTSTTST------TSGGGGGHHHHHHHHHHH
T ss_pred HHHHhhhcccccceeEEEEeecCCchhHHHHHHHHHHhc-CcCCceEEEeeccCCC------CccccccCHHHHHHHHHH
Confidence 1 111 2568999999998 999999999988 6899999999999753 144556788999999999
Q ss_pred HhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCc------------cc----cCCCCCCCCCCCCc
Q 017176 129 IAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK------------AL----LNGISPAENRTIPP 192 (376)
Q Consensus 129 v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~------------~~----~~g~~~~~~~~~~~ 192 (376)
+++.+++||.||+....++.... .. +.. +.+.|++.|++-.+. .. .+|.++ +.+.|
T Consensus 157 v~~~~~~Pv~vKL~p~~~~~~~~-~~---~~~-~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG---~~i~p 228 (295)
T PF01180_consen 157 VREAVDIPVFVKLSPNFTDIEPF-AI---AAE-LAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSG---PAIRP 228 (295)
T ss_dssp HHHHHSSEEEEEE-STSSCHHHH-HH---HHH-HHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEE---GGGHH
T ss_pred HHhccCCCEEEEecCCCCchHHH-HH---HHH-hhccceeEEEEecCccCcccccchhcceeeccccCCcCc---hhhhh
Confidence 99988999999999976653211 11 222 236899999853321 11 112332 34556
Q ss_pred ccHHHHHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHH-hhCCchhh
Q 017176 193 LKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA-YQNPWYTL 247 (376)
Q Consensus 193 ~~~~~v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~-l~~P~lf~ 247 (376)
..+.+++++.+... ++|||++|||.|++|+.+++..|||.||+++++ +.+|+++.
T Consensus 229 ~aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~Gp~~~~ 285 (295)
T PF01180_consen 229 IALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIYRGPGVIR 285 (295)
T ss_dssp HHHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEESHHHHHHGTTHHH
T ss_pred HHHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhhcCcHHHH
Confidence 66788888888764 599999999999999999999999999999999 56798863
|
DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A .... |
| >PLN02826 dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-19 Score=176.88 Aligned_cols=227 Identities=15% Similarity=0.154 Sum_probs=161.5
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccc---------------------cchhh----h
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ---------------------QGNLD----R 56 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~---------------------~~~~~----~ 56 (376)
+.|++++|||.+|.-..-+...++.+.. .| .|.+.+..++..+-.-+ +.... .
T Consensus 78 ~~Gl~f~NPvglAAG~dkn~~~~~~l~~-lG-fG~vevgTVT~~pq~GNp~PR~frl~~~~aiiN~~Gfnn~G~~~~~~~ 155 (409)
T PLN02826 78 VWGRTFSNPIGLAAGFDKNAEAVEGLLG-LG-FGFVEIGSVTPLPQPGNPKPRVFRLREEGAIINRYGFNSEGIVAVAKR 155 (409)
T ss_pred ECCEECCCCCEECcccCCCHHHHHHHHh-cC-CCeEEeCCccCCCCCCCCCCcEEecCCCceeEecCCCCCcCHHHHHHH
Confidence 4589999999999865544555555543 44 88998888876421100 01011 1
Q ss_pred hhccCC-----------------------CCCCEEEEecCC-----CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCC
Q 017176 57 FLAFSP-----------------------EQHPIVLQIGGS-----NLDNLAKATELANAYNYDEINLNCGCPSPKVAGH 108 (376)
Q Consensus 57 ~~~~~~-----------------------~~~p~~vQL~g~-----~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~ 108 (376)
+..... ...|++++|.++ .+++|.+.++.+.+. +|+|+||.+||+..
T Consensus 156 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgvnIg~nk~~~~~~~Dy~~~~~~~~~~-aDylelNiScPNtp---- 230 (409)
T PLN02826 156 LGAQHGKRKLDETSSSSFSSDDVKAGGKAGPGILGVNLGKNKTSEDAAADYVQGVRALSQY-ADYLVINVSSPNTP---- 230 (409)
T ss_pred HHHHhhhcccccccccccccccccccccccCceEEEEeccCCCCcccHHHHHHHHHHHhhh-CCEEEEECCCCCCC----
Confidence 111110 123899999877 579999999999874 79999999999853
Q ss_pred CCccccccCCHHHHHHHHHHHhcc---------cCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCcc--
Q 017176 109 GCFGVSLMLDPKFVGEAMSVIAAN---------TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-- 177 (376)
Q Consensus 109 g~yG~~l~~~~~~~~eiv~~v~~~---------~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~-- 177 (376)
|...+.+++.+.+++++|++. ..+||.||+.+..++ +++.++ ++.+.++|+|.|++...+.
T Consensus 231 ---glr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~-~di~~i----a~~a~~~G~dGIi~~NTt~~r 302 (409)
T PLN02826 231 ---GLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSK-EDLEDI----AAVALALGIDGLIISNTTISR 302 (409)
T ss_pred ---CcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCH-HHHHHH----HHHHHHcCCCEEEEEcccCcC
Confidence 223446788999999988643 468999999986553 233333 4456689999999976432
Q ss_pred -----------ccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC-Cc
Q 017176 178 -----------LLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PW 244 (376)
Q Consensus 178 -----------~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~-P~ 244 (376)
..+|.++ +.+.+...+.++++.+... ++|||++|||.|++|+.+++..||++||++++++.+ |+
T Consensus 303 ~~dl~~~~~~~~~GGlSG---~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~~Gp~ 379 (409)
T PLN02826 303 PDSVLGHPHADEAGGLSG---KPLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAYEGPA 379 (409)
T ss_pred ccchhcccccccCCCcCC---ccccHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHhcCHH
Confidence 1223333 3455666788888887654 699999999999999999999999999999999985 88
Q ss_pred hh
Q 017176 245 YT 246 (376)
Q Consensus 245 lf 246 (376)
++
T Consensus 380 ~i 381 (409)
T PLN02826 380 LI 381 (409)
T ss_pred HH
Confidence 64
|
|
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.8e-18 Score=164.75 Aligned_cols=222 Identities=18% Similarity=0.136 Sum_probs=137.8
Q ss_pred CCeecCCcEEEccCCCCC------hHHHHHHHHHhCCCcEEEecceeecccccccchhhhh--hccCCCCCCEEEEecCC
Q 017176 3 ARQYLPPWFSVAPMMDWT------DNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRF--LAFSPEQHPIVLQIGGS 74 (376)
Q Consensus 3 ~~~~l~nri~lAPM~~~t------d~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~--~~~~~~~~p~~vQL~g~ 74 (376)
-|.++++|+++|||+|.+ +..+...+++.| ..+.+... .+ . +........+ ++-...+.|++.+|+..
T Consensus 48 ~g~~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g-~~~~~Gs~-~~-~-~~~~~~~~~~~~vr~~~~~~p~i~nl~~~ 123 (333)
T TIGR02151 48 LGKRLKAPFYINAMTGGSEEAGKINRNLARAARELG-IPMGVGSQ-RA-A-LKDPETADTFEVVREEAPNGPLIANIGAP 123 (333)
T ss_pred CCccccCCEEEeCCCCCchhHHHHHHHHHHHHHHcC-CCeEEcCc-hh-h-ccChhhHhHHHHHHHhCCCCcEEeecCch
Confidence 357799999999999999 555666778887 44443321 11 1 1111111111 12223578999999864
Q ss_pred CHHH--HHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHH
Q 017176 75 NLDN--LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~--~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~ 152 (376)
.... ..++.+.++..++|+++||+.|++..+. ...+ .+.+...+.++++++.+++||.||.. |.. .+.
T Consensus 124 ~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~-p~g~-----~~f~~~le~i~~i~~~~~vPVivK~~-g~g--~~~- 193 (333)
T TIGR02151 124 QLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQ-PEGD-----RNFKGWLEKIAEICSQLSVPVIVKEV-GFG--ISK- 193 (333)
T ss_pred hhccccHHHHHHHHHHhcCCCEEEcCcccccccC-CCCC-----cCHHHHHHHHHHHHHhcCCCEEEEec-CCC--CCH-
Confidence 3211 2233333444467999999999886433 2221 23456779999999999999999976 332 122
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCC----CCCCCC---CCCCc---ccHHHHHHHHhhCCCCeEEEecCCCCHHHH
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNG----ISPAEN---RTIPP---LKYEYYYALLRDFPDLTFTLNGGINTVDEV 222 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g----~~~~~~---~~~~~---~~~~~v~~~~~~~~~ipVi~nGgI~s~~da 222 (376)
+. ++.++++|+|+|+|||+.....- ....+. ..... ...+.+.++++..+++|||++|||+++.|+
T Consensus 194 ~~----a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasGGI~~~~di 269 (333)
T TIGR02151 194 EV----AKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASGGLRTGLDV 269 (333)
T ss_pred HH----HHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEECCCCCHHHH
Confidence 22 34567899999999986421000 000000 00000 012344555442348999999999999999
Q ss_pred HHHHHcCcCeeEEchHHhhC
Q 017176 223 NAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 223 ~~~l~~Gad~VmiGRa~l~~ 242 (376)
.+++..|||+|++||++|..
T Consensus 270 ~kaLalGAd~V~igr~~L~~ 289 (333)
T TIGR02151 270 AKAIALGADAVGMARPFLKA 289 (333)
T ss_pred HHHHHhCCCeehhhHHHHHH
Confidence 99999999999999998843
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-17 Score=163.21 Aligned_cols=216 Identities=17% Similarity=0.104 Sum_probs=139.9
Q ss_pred CeecCCcEEEccCCCCCh------HHHHHHHHHhCCCcEEEecceeecccccccchhhhhh--ccCCCCCCEEEEecCCC
Q 017176 4 RQYLPPWFSVAPMMDWTD------NHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFL--AFSPEQHPIVLQIGGSN 75 (376)
Q Consensus 4 ~~~l~nri~lAPM~~~td------~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~--~~~~~~~p~~vQL~g~~ 75 (376)
|.+++.|++++||+|.++ ..+...++++| ..+.+..+-.. +. .......+. +-...+.|++++|+...
T Consensus 56 g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G-~~~~~Gs~~~~--~~-~~~~~~~~~~vr~~~p~~p~~aNl~~~~ 131 (352)
T PRK05437 56 GKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELG-IAMGVGSQRAA--LK-DPELADSFSVVRKVAPDGLLFANLGAVQ 131 (352)
T ss_pred CceecCCEEecccCCCChhHHHHHHHHHHHHHHcC-CCeEecccHhh--cc-ChhhHHHHHHHHHHCCCceEEeecCccc
Confidence 567899999999999987 44455677776 55544443110 11 111111111 11123779999888643
Q ss_pred -----HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCcc
Q 017176 76 -----LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDS 150 (376)
Q Consensus 76 -----~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~ 150 (376)
++.+.++.+. .++|+++||++||+.-+.. ..+ .+.+.+.+.++++++.+++||.||... .. .+
T Consensus 132 ~~~~~~~~~~~~~~~---~~adal~l~l~~~qe~~~p-~g~-----~~f~~~le~i~~i~~~~~vPVivK~~g-~g--~s 199 (352)
T PRK05437 132 LYGYGVEEAQRAVEM---IEADALQIHLNPLQELVQP-EGD-----RDFRGWLDNIAEIVSALPVPVIVKEVG-FG--IS 199 (352)
T ss_pred cCCCCHHHHHHHHHh---cCCCcEEEeCccchhhcCC-CCc-----ccHHHHHHHHHHHHHhhCCCEEEEeCC-CC--Cc
Confidence 4555555444 4679999999998764332 211 345667899999999999999999873 21 22
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccc-------cCCC-----CCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCC
Q 017176 151 YNQLCDFIYKVSSLSPTRHFIIHSRKAL-------LNGI-----SPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 218 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~-------~~g~-----~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s 218 (376)
. +. ++.++++|+|+|+|+|+... +++. .......++ ..+.+.++.+..+++|||++|||++
T Consensus 200 ~-~~----a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~p--t~~~l~~i~~~~~~ipvia~GGI~~ 272 (352)
T PRK05437 200 K-ET----AKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIP--TAQSLLEARSLLPDLPIIASGGIRN 272 (352)
T ss_pred H-HH----HHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCC--HHHHHHHHHHhcCCCeEEEECCCCC
Confidence 2 22 33456799999999876320 0110 000000111 2456666666545899999999999
Q ss_pred HHHHHHHHHcCcCeeEEchHHhhC
Q 017176 219 VDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 219 ~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
+.|+.+++..|||+|++||++|..
T Consensus 273 ~~dv~k~l~~GAd~v~ig~~~l~~ 296 (352)
T PRK05437 273 GLDIAKALALGADAVGMAGPFLKA 296 (352)
T ss_pred HHHHHHHHHcCCCEEEEhHHHHHH
Confidence 999999999999999999999863
|
|
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-17 Score=161.89 Aligned_cols=218 Identities=15% Similarity=0.109 Sum_probs=136.7
Q ss_pred CCeecCCcEEEccCCCCC------hHHHHHHHHHhC---CCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecC
Q 017176 3 ARQYLPPWFSVAPMMDWT------DNHYRTLARLIS---KHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG 73 (376)
Q Consensus 3 ~~~~l~nri~lAPM~~~t------d~~~r~~~~~~G---g~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g 73 (376)
-|.+++.||++|||+|.+ +..+...++..| +.|..-..+...+ .. .....++....+.|++++++.
T Consensus 47 ~G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~e-~~----~~~~~vr~~~~~~p~~~Nl~~ 121 (326)
T cd02811 47 LGKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQRAALEDPE-LA----ESFTVVREAPPNGPLIANLGA 121 (326)
T ss_pred CCceecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCchhhccChh-hh----hHHHHHHHhCCCceEEeecCc
Confidence 367899999999999987 456666677776 2222111111111 10 111112223346789999886
Q ss_pred C-----CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCC
Q 017176 74 S-----NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH 148 (376)
Q Consensus 74 ~-----~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~ 148 (376)
. +++.+.++.+ ..++|+++||++||+......+. .+.+...+.++.+++.+++||.+|.... .
T Consensus 122 ~~~~~~~~~~~~~~i~---~~~adalel~l~~~q~~~~~~~~------~df~~~~~~i~~l~~~~~vPVivK~~g~-g-- 189 (326)
T cd02811 122 VQLNGYGVEEARRAVE---MIEADALAIHLNPLQEAVQPEGD------RDFRGWLERIEELVKALSVPVIVKEVGF-G-- 189 (326)
T ss_pred cccCCCCHHHHHHHHH---hcCCCcEEEeCcchHhhcCCCCC------cCHHHHHHHHHHHHHhcCCCEEEEecCC-C--
Confidence 4 3555555444 44689999999988753322211 3556677889999998999999998542 1
Q ss_pred ccHHHHHHHHHHHhhcCCccEEEEccCccc-------cCCCCCCC--CCCC---CcccHHHHHHHHhhCCCCeEEEecCC
Q 017176 149 DSYNQLCDFIYKVSSLSPTRHFIIHSRKAL-------LNGISPAE--NRTI---PPLKYEYYYALLRDFPDLTFTLNGGI 216 (376)
Q Consensus 149 ~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~-------~~g~~~~~--~~~~---~~~~~~~v~~~~~~~~~ipVi~nGgI 216 (376)
.+. +. ++.++++|+|+|+|+|+... +++..... .... .......+.++.+..+++|||++|||
T Consensus 190 ~s~-~~----a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipIiasGGI 264 (326)
T cd02811 190 ISR-ET----AKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLIASGGI 264 (326)
T ss_pred CCH-HH----HHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcEEEECCC
Confidence 222 22 34456899999999875210 01100000 0000 00113455566555448999999999
Q ss_pred CCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 217 NTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 217 ~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
++..|+.+++..|||+|++||++|..
T Consensus 265 r~~~dv~kal~lGAd~V~i~~~~L~~ 290 (326)
T cd02811 265 RNGLDIAKALALGADLVGMAGPFLKA 290 (326)
T ss_pred CCHHHHHHHHHhCCCEEEEcHHHHHH
Confidence 99999999999999999999998743
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-16 Score=155.43 Aligned_cols=178 Identities=17% Similarity=0.182 Sum_probs=129.3
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHH
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAK 81 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~ 81 (376)
++++.++.|+++|||.++|+.+|+..++++||.|++..+.+. ..+....++..||++.++ .+
T Consensus 41 ~~~~~i~~Piv~a~M~gVt~~~la~avs~~GglGvl~~~gl~---------------~~~~~~e~l~~qi~~~~~---~~ 102 (368)
T PRK08649 41 IDAYRFEIPIIASPMDAVVSPETAIELGKLGGLGVLNLEGLW---------------TRYEDPEPILDEIASLGK---DE 102 (368)
T ss_pred ecceeccCcEeccCCcccCCHHHHHHHHhCCCceEEeecccc---------------ccCCCHHHHHHHHHhcCc---HH
Confidence 467889999999999999999999999999998988744433 111223345667777666 45
Q ss_pred HHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHH
Q 017176 82 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKV 161 (376)
Q Consensus 82 aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~ 161 (376)
+++.+++.+++ | .+|+++.++++++++. + +++|+|++. .+..+.+ +.
T Consensus 103 ~~~~~~~~~~~--------P---------------~~p~l~~~iv~~~~~~-~--V~v~vr~~~---~~~~e~a----~~ 149 (368)
T PRK08649 103 ATRLMQELYAE--------P---------------IKPELITERIAEIRDA-G--VIVAVSLSP---QRAQELA----PT 149 (368)
T ss_pred HHHHHHHhhcC--------C---------------CCHHHHHHHHHHHHhC-e--EEEEEecCC---cCHHHHH----HH
Confidence 66666665422 2 4589999999999986 3 666777632 2233443 34
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHH
Q 017176 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~ 239 (376)
+.++|+|.|++|+|+..+...... .+|..+.+++++. ++|||+ |+|.|.+++.+++++|||+||+|++-
T Consensus 150 l~eaGvd~I~vhgrt~~~~h~~~~-------~~~~~i~~~ik~~-~ipVIa-G~V~t~e~A~~l~~aGAD~V~VG~G~ 218 (368)
T PRK08649 150 VVEAGVDLFVIQGTVVSAEHVSKE-------GEPLNLKEFIYEL-DVPVIV-GGCVTYTTALHLMRTGAAGVLVGIGP 218 (368)
T ss_pred HHHCCCCEEEEeccchhhhccCCc-------CCHHHHHHHHHHC-CCCEEE-eCCCCHHHHHHHHHcCCCEEEECCCC
Confidence 458999999999997532221111 0256566777765 899999 99999999999999999999999874
|
|
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.7e-16 Score=148.56 Aligned_cols=192 Identities=11% Similarity=0.022 Sum_probs=136.3
Q ss_pred eecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHHHHH
Q 017176 5 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATE 84 (376)
Q Consensus 5 ~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~aa~ 84 (376)
+.++.||++|||.++|+..+...+.+.||.|++-....+.+.+-..-...++ ..++|++++++...|. +.+..+
T Consensus 8 lgi~~Pii~apM~~~s~~~la~avs~aGglG~l~~~~~~~~~l~~~i~~~~~-----~t~~pfgvn~~~~~~~-~~~~~~ 81 (307)
T TIGR03151 8 LGIEYPIFQGGMAWVATGSLAAAVSNAGGLGIIGAGNAPPDVVRKEIRKVKE-----LTDKPFGVNIMLLSPF-VDELVD 81 (307)
T ss_pred hCCCCCEEcCCCCCCCCHHHHHHHHhCCCcceeccccCCHHHHHHHHHHHHH-----hcCCCcEEeeecCCCC-HHHHHH
Confidence 4578899999999999999999999999999887665544433221111111 2468999999865443 344556
Q ss_pred HHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhc
Q 017176 85 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSL 164 (376)
Q Consensus 85 ~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~ 164 (376)
.+.+.|.+.|.+++|.|. ++++.+++. ++.+...+. +.++ ++.+++
T Consensus 82 ~~~~~~v~~v~~~~g~p~---------------------~~i~~lk~~-g~~v~~~v~-------s~~~-----a~~a~~ 127 (307)
T TIGR03151 82 LVIEEKVPVVTTGAGNPG---------------------KYIPRLKEN-GVKVIPVVA-------SVAL-----AKRMEK 127 (307)
T ss_pred HHHhCCCCEEEEcCCCcH---------------------HHHHHHHHc-CCEEEEEcC-------CHHH-----HHHHHH
Confidence 667789999988665542 345555543 556654332 2222 233567
Q ss_pred CCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017176 165 SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 165 ~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
+|+|.|++||+.. +|+.+. ...+.++.++++.+ ++|||++|||.+++++.+++..|||+||+|+.++..+.
T Consensus 128 ~GaD~Ivv~g~ea--gGh~g~------~~~~~ll~~v~~~~-~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~~t~E 198 (307)
T TIGR03151 128 AGADAVIAEGMES--GGHIGE------LTTMALVPQVVDAV-SIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLCAKE 198 (307)
T ss_pred cCCCEEEEECccc--CCCCCC------CcHHHHHHHHHHHh-CCCEEEECCCCCHHHHHHHHHcCCCEeecchHHhcccc
Confidence 9999999999854 233211 11378888888765 89999999999999999999999999999999998776
Q ss_pred h
Q 017176 245 Y 245 (376)
Q Consensus 245 l 245 (376)
-
T Consensus 199 s 199 (307)
T TIGR03151 199 C 199 (307)
T ss_pred c
Confidence 4
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-15 Score=139.94 Aligned_cols=192 Identities=15% Similarity=0.148 Sum_probs=136.0
Q ss_pred CCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCH-HHHHHHHHHH
Q 017176 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNL-DNLAKATELA 86 (376)
Q Consensus 8 ~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~-~~~~~aa~~~ 86 (376)
++|+++|||+|+++..++..+.++|+.|++.+++++.+.+.+..+.... . .+.|+.+|++.+++ +.+.+.++.+
T Consensus 2 ~~pi~~a~m~g~~~~~~~~~~~~~G~ig~i~~~~~~~~~~~~~~~~i~~---~--~~~~~~v~~i~~~~~~~~~~~~~~~ 76 (236)
T cd04730 2 RYPIIQAPMAGVSTPELAAAVSNAGGLGFIGAGYLTPEALRAEIRKIRA---L--TDKPFGVNLLVPSSNPDFEALLEVA 76 (236)
T ss_pred CCCEECCCCCCCCCHHHHHHHHhCCCccccCCCCCCHHHHHHHHHHHHH---h--cCCCeEEeEecCCCCcCHHHHHHHH
Confidence 5799999999999999999998899889988888876654332222221 1 14678899998875 4566777888
Q ss_pred HHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCC
Q 017176 87 NAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSP 166 (376)
Q Consensus 87 ~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~G 166 (376)
.++|+|+|.++.+++. ++++.+++ .++++.+++. +.+++ .. +.+.|
T Consensus 77 ~~~g~d~v~l~~~~~~---------------------~~~~~~~~-~~i~~i~~v~-------~~~~~----~~-~~~~g 122 (236)
T cd04730 77 LEEGVPVVSFSFGPPA---------------------EVVERLKA-AGIKVIPTVT-------SVEEA----RK-AEAAG 122 (236)
T ss_pred HhCCCCEEEEcCCCCH---------------------HHHHHHHH-cCCEEEEeCC-------CHHHH----HH-HHHcC
Confidence 8999999999865221 22333332 2567766542 12222 22 33589
Q ss_pred ccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 167 TRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 167 vd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
+|+|.++++.. .|.... .....++.+.++++.. ++||+++|||.+++++.++++.|||+|++|++++..+..
T Consensus 123 ad~i~~~~~~~--~G~~~~----~~~~~~~~i~~i~~~~-~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~e~ 194 (236)
T cd04730 123 ADALVAQGAEA--GGHRGT----FDIGTFALVPEVRDAV-DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEES 194 (236)
T ss_pred CCEEEEeCcCC--CCCCCc----cccCHHHHHHHHHHHh-CCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhcCccc
Confidence 99999988632 222111 0012367788777654 899999999999999999999999999999999988764
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.7e-15 Score=141.91 Aligned_cols=203 Identities=15% Similarity=0.063 Sum_probs=130.5
Q ss_pred CeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHHHH
Q 017176 4 RQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKAT 83 (376)
Q Consensus 4 ~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~aa 83 (376)
.+.++.||+.|||.++|+..++..+.++||.|++..+|.. +.+.. .+..+. +...+.+..+.+++... .+
T Consensus 30 ~~~l~~Piv~apM~~vt~~~ma~ava~~GglGvi~~~~~~-~~~~~------~i~~vk--~~l~v~~~~~~~~~~~~-~~ 99 (325)
T cd00381 30 NITLNIPLVSAPMDTVTESEMAIAMARLGGIGVIHRNMSI-EEQAE------EVRKVK--GRLLVGAAVGTREDDKE-RA 99 (325)
T ss_pred ccccCCCEEecCCCcCCcHHHHHHHHHCCCEEEEeCCCCH-HHHHH------HHHHhc--cCceEEEecCCChhHHH-HH
Confidence 4778999999999999999999998999999998876532 22111 111111 33444555666666554 44
Q ss_pred HHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC-ccEEEEecCCCCCCccHHHHHHHHHHHh
Q 017176 84 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDFIYKVS 162 (376)
Q Consensus 84 ~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~-~pv~vKiR~g~~~~~~~~~~~~~i~~~~ 162 (376)
+.+.++|+|.|+++++. | +++.+.++++.+++... +||.+ |- ..+.+.. +.+
T Consensus 100 ~~l~eagv~~I~vd~~~-----------G-----~~~~~~~~i~~ik~~~p~v~Vi~----G~--v~t~~~A-----~~l 152 (325)
T cd00381 100 EALVEAGVDVIVIDSAH-----------G-----HSVYVIEMIKFIKKKYPNVDVIA----GN--VVTAEAA-----RDL 152 (325)
T ss_pred HHHHhcCCCEEEEECCC-----------C-----CcHHHHHHHHHHHHHCCCceEEE----CC--CCCHHHH-----HHH
Confidence 45556899999998632 2 12456788888887652 45444 21 1233332 223
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC--CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHh
Q 017176 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~--~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l 240 (376)
.++|+|+|.|+.+.... ...... .......+..+.++.+.. .++|||++|||.++.|+.++++.|||+||+||.++
T Consensus 153 ~~aGaD~I~vg~g~G~~-~~t~~~-~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa 230 (325)
T cd00381 153 IDAGADGVKVGIGPGSI-CTTRIV-TGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLA 230 (325)
T ss_pred HhcCCCEEEECCCCCcC-ccccee-CCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEecchhc
Confidence 47999999997432110 000000 001111255555544322 26999999999999999999999999999999999
Q ss_pred hCCch
Q 017176 241 QNPWY 245 (376)
Q Consensus 241 ~~P~l 245 (376)
....-
T Consensus 231 ~t~Es 235 (325)
T cd00381 231 GTDES 235 (325)
T ss_pred ccccC
Confidence 87654
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-14 Score=141.19 Aligned_cols=207 Identities=16% Similarity=0.159 Sum_probs=136.5
Q ss_pred CeecCCcEEEccCCCC------ChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecC-CCH
Q 017176 4 RQYLPPWFSVAPMMDW------TDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG-SNL 76 (376)
Q Consensus 4 ~~~l~nri~lAPM~~~------td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g-~~~ 76 (376)
|.++.-|+++|||+.. .+....+.+.+.| ..++.+-+.+ ..++.+.+. ..+.+...||+- .|.
T Consensus 76 G~~~~~Pv~iaP~g~~~l~~p~gE~~~ArAA~~~g-~~~~lSt~ss--------~slEev~~~-~~~~~~wfQlY~~~dr 145 (367)
T TIGR02708 76 GHKLKSPFIMAPVAAHKLANEQGEVATARGVSEFG-SIYTTSSYST--------ADLPEISEA-LNGTPHWFQFYMSKDD 145 (367)
T ss_pred CcccccccccCcHHHhhccCCcHHHHHHHHHHHcC-CCeeeccccc--------CCHHHHHhh-cCCCceEEEEeccCCH
Confidence 4568889999999753 2344555566665 4444332211 123333222 124689999997 456
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCcccc----CCC----------------Cccccc-----cCCHHHHHHHHHHHhc
Q 017176 77 DNLAKATELANAYNYDEINLNCGCPSPKVA----GHG----------------CFGVSL-----MLDPKFVGEAMSVIAA 131 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~----r~g----------------~yG~~l-----~~~~~~~~eiv~~v~~ 131 (376)
+...+..++++++||++|-+...+|..-.. |++ ..+..+ ..++.+-.+.++.+++
T Consensus 146 ~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~l~~ 225 (367)
T TIGR02708 146 GINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAKQKLSPRDIEEIAG 225 (367)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCccchhhhccccCCCCCHHHHHHHHH
Confidence 666788899999999999998887742100 000 001100 0123344577888888
Q ss_pred ccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEE--ccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCC
Q 017176 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII--HSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDL 208 (376)
Q Consensus 132 ~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~v--h~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~i 208 (376)
.+++||+|| |+.. .++ ++.+.++|+|+|.| ||+.+.+.+ +..++.+.++++.+ .++
T Consensus 226 ~~~~PvivK---Gv~~---~ed-----a~~a~~~Gvd~I~VS~HGGrq~~~~----------~a~~~~L~ei~~av~~~i 284 (367)
T TIGR02708 226 YSGLPVYVK---GPQC---PED-----ADRALKAGASGIWVTNHGGRQLDGG----------PAAFDSLQEVAEAVDKRV 284 (367)
T ss_pred hcCCCEEEe---CCCC---HHH-----HHHHHHcCcCEEEECCcCccCCCCC----------CcHHHHHHHHHHHhCCCC
Confidence 899999999 4332 222 23345799998865 777654432 22377788887665 369
Q ss_pred eEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017176 209 TFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 209 pVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
|||++|||++..|+.+++..|||+|||||.+|.
T Consensus 285 ~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~ 317 (367)
T TIGR02708 285 PIVFDSGVRRGQHVFKALASGADLVALGRPVIY 317 (367)
T ss_pred cEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHH
Confidence 999999999999999999999999999999764
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.3e-15 Score=139.05 Aligned_cols=157 Identities=21% Similarity=0.220 Sum_probs=104.8
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCC-CC-----------
Q 017176 80 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV-DD----------- 147 (376)
Q Consensus 80 ~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~-~~----------- 147 (376)
.++|++++++|||.|++|.|||++.+. .| |.+++++|+.+. +|++.+++||+.|+|.|. .+
T Consensus 27 ~~~a~iae~~g~~~v~~~~~~psd~~~-~g--g~~Rm~~p~~I~----aIk~~V~iPVigk~Righ~~Ea~~L~~~GvDi 99 (293)
T PRK04180 27 AEQAKIAEEAGAVAVMALERVPADIRA-AG--GVARMADPKMIE----EIMDAVSIPVMAKARIGHFVEAQILEALGVDY 99 (293)
T ss_pred HHHHHHHHHhChHHHHHccCCCchHhh-cC--CeeecCCHHHHH----HHHHhCCCCeEEeehhhHHHHHHHHHHcCCCE
Confidence 468999999999999999999998643 34 999999998877 566667899999999873 00
Q ss_pred ---Cc---cHHHHHHHH-----------------HHHhhcCCccEEEEcc--Ccc-----------------ccCCCCCC
Q 017176 148 ---HD---SYNQLCDFI-----------------YKVSSLSPTRHFIIHS--RKA-----------------LLNGISPA 185 (376)
Q Consensus 148 ---~~---~~~~~~~~i-----------------~~~~e~~Gvd~I~vh~--r~~-----------------~~~g~~~~ 185 (376)
.+ ..+++...+ +....+.|+|.|--.| +|. ...|+.+.
T Consensus 100 ID~Te~lrpad~~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~ 179 (293)
T PRK04180 100 IDESEVLTPADEEYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSED 179 (293)
T ss_pred EeccCCCCchHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 00 011111000 0011234555554331 110 01222211
Q ss_pred CC---CCCCcccHHHHHHHHhhCCCCeEE--EecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017176 186 EN---RTIPPLKYEYYYALLRDFPDLTFT--LNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 186 ~~---~~~~~~~~~~v~~~~~~~~~ipVi--~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
.. .......++.+.++++.. ++||+ +.|||.|++++..+++.|||+|++|++++..+.
T Consensus 180 ~~~~~a~~~~~~~elL~ei~~~~-~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~d 242 (293)
T PRK04180 180 ELYTAAKELQAPYELVKEVAELG-RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGD 242 (293)
T ss_pred HHHhhccccCCCHHHHHHHHHhC-CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCC
Confidence 10 001233588888888765 89998 999999999999999999999999999985544
|
|
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.7e-14 Score=136.30 Aligned_cols=213 Identities=15% Similarity=0.182 Sum_probs=135.8
Q ss_pred CeecCCcEEEccCCCCC------hHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEec-CCCH
Q 017176 4 RQYLPPWFSVAPMMDWT------DNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG-GSNL 76 (376)
Q Consensus 4 ~~~l~nri~lAPM~~~t------d~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~-g~~~ 76 (376)
|.+++-|+++|||+... +....+.+.+.| ..++.+-+.+ . ..+.+.+....+.|+.+||+ ..+.
T Consensus 60 G~~~~~Pi~iaP~~~~~~~~~~ge~~~AraA~~~g-i~~~lss~s~-~-------s~e~v~~~~~~~~~~w~Qly~~~d~ 130 (344)
T cd02922 60 GHKVSLPFFISPAALAKLAHPDGELNLARAAGKHG-ILQMISTNAS-C-------SLEEIVDARPPDQPLFFQLYVNKDR 130 (344)
T ss_pred CcccCCceeeChHHHhhhCCchHHHHHHHHHHHcC-CCEEecCccc-C-------CHHHHHHhcCCCCcEEEEEeecCCH
Confidence 45788899999998422 223444455554 4443322221 1 22232222233468999997 4577
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCccc----cCCC-----------------Cc-cccc---cCCHHHHHHHHHHHhc
Q 017176 77 DNLAKATELANAYNYDEINLNCGCPSPKV----AGHG-----------------CF-GVSL---MLDPKFVGEAMSVIAA 131 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~~v----~r~g-----------------~y-G~~l---~~~~~~~~eiv~~v~~ 131 (376)
+...+..++++++||++|-++...|..-. .|++ .. +... ..++....+.++.+++
T Consensus 131 ~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 210 (344)
T cd02922 131 TKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRK 210 (344)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHHHHHHH
Confidence 88888899999999999999999884311 0000 00 0000 1134456788999999
Q ss_pred ccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHh---hC-CC
Q 017176 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLR---DF-PD 207 (376)
Q Consensus 132 ~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~---~~-~~ 207 (376)
.++.||.|| |+.. .++ ++.+.++|+|+|+|++.. |... + ...++ .+.+.++.+ +. .+
T Consensus 211 ~~~~PvivK---gv~~---~~d-----A~~a~~~G~d~I~vsnhg----G~~~-d-~~~~~--~~~L~~i~~~~~~~~~~ 271 (344)
T cd02922 211 HTKLPIVLK---GVQT---VED-----AVLAAEYGVDGIVLSNHG----GRQL-D-TAPAP--IEVLLEIRKHCPEVFDK 271 (344)
T ss_pred hcCCcEEEE---cCCC---HHH-----HHHHHHcCCCEEEEECCC----cccC-C-CCCCH--HHHHHHHHHHHHHhCCC
Confidence 999999999 4432 222 223457999999996522 1110 1 11122 334444433 22 26
Q ss_pred CeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017176 208 LTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 208 ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
+|||+.|||++..|+.+++..|||+|+|||++|..+.
T Consensus 272 ~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~l~ 308 (344)
T cd02922 272 IEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALS 308 (344)
T ss_pred ceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHh
Confidence 9999999999999999999999999999999998764
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.4e-13 Score=120.98 Aligned_cols=195 Identities=14% Similarity=0.070 Sum_probs=131.8
Q ss_pred EEEccCCCCC-hHHHHHH-HHHhCCCcEEEecceeecccccccchhhhh-hccCCCCCCEEEEecCCCHHHHH-HHHHHH
Q 017176 11 FSVAPMMDWT-DNHYRTL-ARLISKHAWLYTEMLAAETIIYQQGNLDRF-LAFSPEQHPIVLQIGGSNLDNLA-KATELA 86 (376)
Q Consensus 11 i~lAPM~~~t-d~~~r~~-~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~-~~~~~~~~p~~vQL~g~~~~~~~-~aa~~~ 86 (376)
+++++|.+-. +.....+ ....||++++.++................+ ...+..+.|+++|++.+++..+. .+++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 80 (200)
T cd04722 1 VILALLAGGPSGDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAA 80 (200)
T ss_pred CeeeccccCchHHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHH
Confidence 4678898865 3333333 234456888888877766432221110001 11234578999999988765543 346788
Q ss_pred HHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHhhcC
Q 017176 87 NAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLS 165 (376)
Q Consensus 87 ~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~ 165 (376)
.++|+|+|++|.+||.. +++..++++++++.+ +.|+.+|++...+.. +. . +.+.
T Consensus 81 ~~~g~d~v~l~~~~~~~---------------~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~----~~-----~-~~~~ 135 (200)
T cd04722 81 RAAGADGVEIHGAVGYL---------------AREDLELIRELREAVPDVKVVVKLSPTGELA----AA-----A-AEEA 135 (200)
T ss_pred HHcCCCEEEEeccCCcH---------------HHHHHHHHHHHHHhcCCceEEEEECCCCccc----hh-----h-HHHc
Confidence 99999999999998853 688899999999887 899999998743321 10 0 3468
Q ss_pred CccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEch
Q 017176 166 PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 166 Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGR 237 (376)
|+|+|.++++.....+... .+.....+..+.+ .+++||+++|||.+++++.++++.|||+|++||
T Consensus 136 g~d~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 136 GVDEVGLGNGGGGGGGRDA------VPIADLLLILAKR-GSKVPVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred CCCEEEEcCCcCCCCCccC------chhHHHHHHHHHh-cCCCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence 9999999987643222110 0101123333333 458999999999999999999999999999997
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-14 Score=138.72 Aligned_cols=209 Identities=17% Similarity=0.179 Sum_probs=137.1
Q ss_pred CeecCCcEEEccCCCC------ChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecC-CCH
Q 017176 4 RQYLPPWFSVAPMMDW------TDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG-SNL 76 (376)
Q Consensus 4 ~~~l~nri~lAPM~~~------td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g-~~~ 76 (376)
|.++.-|+++|||+.. .+....+.+.+.| ..++.+-+.+ ...+++.... .+.+..+||+. .+.
T Consensus 68 G~~~~~P~~iaP~g~~~l~~p~ge~a~AraA~~~g-i~~~lSt~s~--------~s~Eei~~~~-~~~~~wfQlY~~~d~ 137 (351)
T cd04737 68 GIKLKTPIIMAPIAAHGLAHATGEVATARGMAEVG-SLFSISTYSN--------TSLEEIAKAS-NGGPKWFQLYMSKDD 137 (351)
T ss_pred CccccchhhhHHHHHHHhcCCchHHHHHHHHHHcC-CCEEecCCCC--------CCHHHHHHhc-CCCCeEEEEeecCCH
Confidence 4567889999999752 2334445555554 4444333211 1223332222 24579999996 466
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCcccc----CCC-----------Cc------ccccc-----CCHHHHHHHHHHHh
Q 017176 77 DNLAKATELANAYNYDEINLNCGCPSPKVA----GHG-----------CF------GVSLM-----LDPKFVGEAMSVIA 130 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~----r~g-----------~y------G~~l~-----~~~~~~~eiv~~v~ 130 (376)
+...+..++++++||..|-+...+|..-.. |++ .+ |.... .++.+..+.++.++
T Consensus 138 ~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr 217 (351)
T cd04737 138 GFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAAKQKLSPADIEFIA 217 (351)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccCcchhhhhhhccCCCCHHHHHHHH
Confidence 777778889999999999998877642110 000 00 00000 01234567888999
Q ss_pred cccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEE--ccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-C
Q 017176 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII--HSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-D 207 (376)
Q Consensus 131 ~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~v--h~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ 207 (376)
+.+++||.+| |+.. .++ ++.+.++|+|+|+| ||+.+...+ +..++.+.++.+... +
T Consensus 218 ~~~~~PvivK---gv~~---~~d-----A~~a~~~G~d~I~vsnhGGr~ld~~----------~~~~~~l~~i~~a~~~~ 276 (351)
T cd04737 218 KISGLPVIVK---GIQS---PED-----ADVAINAGADGIWVSNHGGRQLDGG----------PASFDSLPEIAEAVNHR 276 (351)
T ss_pred HHhCCcEEEe---cCCC---HHH-----HHHHHHcCCCEEEEeCCCCccCCCC----------chHHHHHHHHHHHhCCC
Confidence 9899999999 3322 222 23345799999999 776553322 223677788776553 6
Q ss_pred CeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017176 208 LTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 208 ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
+|||++|||++..|+.+++..|||+|||||+++...
T Consensus 277 i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~l 312 (351)
T cd04737 277 VPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYGL 312 (351)
T ss_pred CeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHH
Confidence 999999999999999999999999999999887644
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1 | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.9e-13 Score=130.92 Aligned_cols=196 Identities=16% Similarity=0.156 Sum_probs=117.2
Q ss_pred eecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHH---
Q 017176 5 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAK--- 81 (376)
Q Consensus 5 ~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~--- 81 (376)
+.++.||++|||.++|+..+...+.++||.|.+-+.....+.+-....+++++ .++|++++++......-..
T Consensus 8 lgi~~PIiqapM~~is~~~LaaAVs~aGglG~l~~~~~~~~~l~~~i~~~~~~-----t~~pfgvnl~~~~~~~~~~~~~ 82 (330)
T PF03060_consen 8 LGIKYPIIQAPMGGISTPELAAAVSNAGGLGFLGAGGLTPEQLREEIRKIRAL-----TDKPFGVNLFLPPPDPADEEDA 82 (330)
T ss_dssp HT-SSSEEE---TTTSSHHHHHHHHHTTSBEEEECTTSSHHHHHHHHHHHHHH------SS-EEEEEETTSTTHHHH-HH
T ss_pred hCCCcCEEcCCCCCCChHHHHHHHHhCCCEeeccccccChHHHHHHHHHHHhh-----ccccccccccccCcccchhhhh
Confidence 45788999999999999999999999999999887666654443332233333 3449999998653211111
Q ss_pred --------HHHHHHH--------------CCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEE
Q 017176 82 --------ATELANA--------------YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSV 139 (376)
Q Consensus 82 --------aa~~~~~--------------~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~v 139 (376)
......+ .+.+.|-+.+|.|.. ++++.+++ .++.+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~p~~--------------------~~i~~l~~-~gi~v~~ 141 (330)
T PF03060_consen 83 WPKELGNAVLELCIEEGVPFEEQLDVALEAKPDVVSFGFGLPPP--------------------EVIERLHA-AGIKVIP 141 (330)
T ss_dssp HHHHTHHHHHHHHHHTT-SHHHHHHHHHHS--SEEEEESSSC-H--------------------HHHHHHHH-TT-EEEE
T ss_pred hhhhhHHHHHHHHHHhCcccccccccccccceEEEEeecccchH--------------------HHHHHHHH-cCCcccc
Confidence 1122223 344578777777642 22334333 3566665
Q ss_pred EecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCH
Q 017176 140 KCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV 219 (376)
Q Consensus 140 KiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~ 219 (376)
.+. +..+. +.+.+.|+|.|++.|... +|+.+. ... ..+.++.++.+.. ++|||+.|||.|.
T Consensus 142 ~v~-------s~~~A-----~~a~~~G~D~iv~qG~eA--GGH~g~---~~~-~~~~L~~~v~~~~-~iPViaAGGI~dg 202 (330)
T PF03060_consen 142 QVT-------SVREA-----RKAAKAGADAIVAQGPEA--GGHRGF---EVG-STFSLLPQVRDAV-DIPVIAAGGIADG 202 (330)
T ss_dssp EES-------SHHHH-----HHHHHTT-SEEEEE-TTS--SEE------SSG--HHHHHHHHHHH--SS-EEEESS--SH
T ss_pred ccC-------CHHHH-----HHhhhcCCCEEEEecccc--CCCCCc---ccc-ceeeHHHHHhhhc-CCcEEEecCcCCH
Confidence 432 23332 234579999999998764 333221 111 1256677776654 8999999999999
Q ss_pred HHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 220 DEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 220 ~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
+++..++..|||+|++|+.++..+.-
T Consensus 203 ~~iaaal~lGA~gV~~GTrFl~t~Es 228 (330)
T PF03060_consen 203 RGIAAALALGADGVQMGTRFLATEES 228 (330)
T ss_dssp HHHHHHHHCT-SEEEESHHHHTSTTS
T ss_pred HHHHHHHHcCCCEeecCCeEEecccc
Confidence 99999999999999999999988764
|
13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A. |
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-12 Score=126.05 Aligned_cols=205 Identities=14% Similarity=0.105 Sum_probs=136.9
Q ss_pred CeecCCcEEEccCCCC------ChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHH
Q 017176 4 RQYLPPWFSVAPMMDW------TDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLD 77 (376)
Q Consensus 4 ~~~l~nri~lAPM~~~------td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~ 77 (376)
|.++.-||++||++.. .+....+.+.+.| ..++.+-+.+ ..++...+. .+.+...||+-.+.+
T Consensus 60 G~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g-~~~~lSt~ss--------~siEeva~a--~~~~~wfQLY~~~r~ 128 (361)
T cd04736 60 GKVWSAPLVIAPTGLNGAFWPNGDLALARAAAKAG-IPFVLSTASN--------MSIEDVARQ--ADGDLWFQLYVVHRE 128 (361)
T ss_pred CccccccccccHHHHHhccCCcHHHHHHHHHHHcC-CcEEeeCCCC--------CCHHHHHhh--cCCCeEEEEEecCHH
Confidence 4567889999999642 3444555566654 5454433322 122333222 235799999998877
Q ss_pred HHHHHHHHHHHCCCCEEEecCCCCCcccc----CCC----------------------------------Ccc----cc-
Q 017176 78 NLAKATELANAYNYDEINLNCGCPSPKVA----GHG----------------------------------CFG----VS- 114 (376)
Q Consensus 78 ~~~~aa~~~~~~G~d~IeiN~gcP~~~v~----r~g----------------------------------~yG----~~- 114 (376)
...+..++++++||++|-++..+|..-.. |++ .+. ..
T Consensus 129 ~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~ 208 (361)
T cd04736 129 LAELLVKRALAAGYTTLVLTTDVAVNGYRERDLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFASDDAIDV 208 (361)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCCchhhhhcCCCCCcccchhhhhhhccCchhhhhhcccccccccccccccccch
Confidence 77778889999999999998877753110 000 000 00
Q ss_pred ------c--cCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEc--cCccccCCCCC
Q 017176 115 ------L--MLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISP 184 (376)
Q Consensus 115 ------l--~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh--~r~~~~~g~~~ 184 (376)
+ .-++.+..+.++.+++.++.|+.+| |+- +.++.. .+.+.|+|.|.|+ |+++....
T Consensus 209 ~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pviiK---gV~---~~eda~-----~a~~~G~d~I~VSnhGGrqld~~--- 274 (361)
T cd04736 209 EVQAALMSRQMDASFNWQDLRWLRDLWPHKLLVK---GIV---TAEDAK-----RCIELGADGVILSNHGGRQLDDA--- 274 (361)
T ss_pred hhHHHHHHhccCCcCCHHHHHHHHHhCCCCEEEe---cCC---CHHHHH-----HHHHCCcCEEEECCCCcCCCcCC---
Confidence 0 1134455678999999999999999 443 233322 2346999999984 54432111
Q ss_pred CCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017176 185 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 185 ~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
+...+.+.++.+.+ ++|||+.|||+++.|+.+++..|||+||+||++|.
T Consensus 275 -------~~~~~~L~ei~~~~-~~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l~ 323 (361)
T cd04736 275 -------IAPIEALAEIVAAT-YKPVLIDSGIRRGSDIVKALALGANAVLLGRATLY 323 (361)
T ss_pred -------ccHHHHHHHHHHHh-CCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 11367778887765 79999999999999999999999999999999874
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.8e-12 Score=118.60 Aligned_cols=232 Identities=11% Similarity=0.131 Sum_probs=148.3
Q ss_pred CeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeeccccccc-ch--------------------h--------
Q 017176 4 RQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQ-GN--------------------L-------- 54 (376)
Q Consensus 4 ~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~-~~--------------------~-------- 54 (376)
+.+++|||.+|.-..-+....-.+.. . |+|++.+..++..+--.+. ++ .
T Consensus 90 g~~f~NPiglAAGfdk~~eaidgL~~-~-gfG~ieigSvTp~pqeGNPkPRvfrl~ed~~vINryGfns~Gi~~vl~rl~ 167 (398)
T KOG1436|consen 90 GRKFSNPIGLAAGFDKNAEAIDGLAN-S-GFGFIEIGSVTPKPQEGNPKPRVFRLPEDLAVINRYGFNSEGIDAVLQRLR 167 (398)
T ss_pred hhhccCchhhhhccCcchHHHHHHHh-C-CCceEEecccccCCCCCCCCCceEecccccchhhccCCCcccHHHHHHHHH
Confidence 45789999999876666666666654 4 5889888877764321110 00 0
Q ss_pred -hhhhccCCCCCCEEEEecCCC-----HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHH
Q 017176 55 -DRFLAFSPEQHPIVLQIGGSN-----LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 128 (376)
Q Consensus 55 -~~~~~~~~~~~p~~vQL~g~~-----~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~ 128 (376)
.+.....+...+++|+|.-+. ..+|++-.+..-+. +|...||.+||+..-.| .++.-..+.+.+..
T Consensus 168 ~~r~~~~~e~~~~lGVnlgknk~s~d~~~dy~~gV~~~g~~-adylviNvSsPNtpGlr-------~lq~k~~L~~ll~~ 239 (398)
T KOG1436|consen 168 AKRQAKYPEAPAKLGVNLGKNKTSEDAILDYVEGVRVFGPF-ADYLVINVSSPNTPGLR-------SLQKKSDLRKLLTK 239 (398)
T ss_pred HHHHhcCCCccccceeeeccccCCcchHHHHHHHhhhcccc-cceEEEeccCCCCcchh-------hhhhHHHHHHHHHH
Confidence 011223445567889987543 34555555554444 59999999999864222 22333334444444
Q ss_pred Hhcc-------cCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccc----------cCCCCCCCCCCCC
Q 017176 129 IAAN-------TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL----------LNGISPAENRTIP 191 (376)
Q Consensus 129 v~~~-------~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~----------~~g~~~~~~~~~~ 191 (376)
+..+ ...|+.+|+.+.... .+.+| ++.+..+..+|.++|++-+-. ..++++-...++.
T Consensus 240 v~~a~~~~~~~~~~pvl~kiapDL~~-~el~d----ia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk 314 (398)
T KOG1436|consen 240 VVQARDKLPLGKKPPVLVKIAPDLSE-KELKD----IALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLK 314 (398)
T ss_pred HHHHHhccccCCCCceEEEeccchhH-HHHHH----HHHHHHHhCccceeecCceeecCccccccccccccCCCCCCccc
Confidence 4322 245999999986544 22333 344456788999999865421 1122222334666
Q ss_pred cccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC-CchhhHhhh
Q 017176 192 PLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYTLGHVD 251 (376)
Q Consensus 192 ~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~-P~lf~~~~~ 251 (376)
+.....++++.+.. ++||||++|||.|..||.+.+.+||..|++++++... |-+| ..|+
T Consensus 315 ~~st~~vR~mY~lt~g~IpiIG~GGV~SG~DA~EkiraGASlvQlyTal~yeGp~i~-~kIk 375 (398)
T KOG1436|consen 315 PISTNTVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIRAGASLVQLYTALVYEGPAII-EKIK 375 (398)
T ss_pred hhHHHHHHHHHHhccCCCceEeecCccccHhHHHHHhcCchHHHHHHHHhhcCchhH-HHHH
Confidence 66677777765543 4799999999999999999999999999999999876 7764 4444
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-12 Score=121.27 Aligned_cols=121 Identities=15% Similarity=0.306 Sum_probs=92.7
Q ss_pred ccccccCCHHHHHHHHHHHhccc--CccE---EEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCC
Q 017176 111 FGVSLMLDPKFVGEAMSVIAANT--NVPV---SVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185 (376)
Q Consensus 111 yG~~l~~~~~~~~eiv~~v~~~~--~~pv---~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~ 185 (376)
.|++++++|+++.++++.+.+.+ ++++ .+|++ ||++.. .++.++ .+.+++.|++.|++|+++....+. +
T Consensus 103 iGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~-Gw~~~~--~~~~~~-~~~l~~~G~~~iiv~~~~~~g~~~-G- 176 (241)
T PRK14024 103 IGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAAR-GWTRDG--GDLWEV-LERLDSAGCSRYVVTDVTKDGTLT-G- 176 (241)
T ss_pred ECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccC-CeeecC--ccHHHH-HHHHHhcCCCEEEEEeecCCCCcc-C-
Confidence 38899999999999999987664 4455 66664 887522 122333 334578999999999998642221 1
Q ss_pred CCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH---cCcCeeEEchHHhhCCch
Q 017176 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR---KGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 186 ~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~---~Gad~VmiGRa~l~~P~l 245 (376)
+ +|+.+.++++. .++|||+||||.|.+|+.++.+ +|||+||+||+++.++.-
T Consensus 177 ------~-d~~~i~~i~~~-~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~~~ 231 (241)
T PRK14024 177 ------P-NLELLREVCAR-TDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGAFT 231 (241)
T ss_pred ------C-CHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCCCC
Confidence 1 48888888876 4899999999999999999864 699999999999998754
|
|
| >PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.6e-13 Score=128.94 Aligned_cols=206 Identities=20% Similarity=0.170 Sum_probs=131.1
Q ss_pred CCeecCCcEEEccCCCC------ChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecC-CC
Q 017176 3 ARQYLPPWFSVAPMMDW------TDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG-SN 75 (376)
Q Consensus 3 ~~~~l~nri~lAPM~~~------td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g-~~ 75 (376)
-|.++.-||++|||++. .+..+.+.|.+.| ..++. ...+... .+...... ..+.++||+- .+
T Consensus 53 lG~~~s~P~~iaP~~~~~l~~~~ge~~lAraA~~~G-i~~~l-ss~s~~~-------~e~ia~~~--~~~~~~Qly~~~d 121 (356)
T PF01070_consen 53 LGQKLSMPFFIAPMGGGGLAHPDGERALARAAAKAG-IPMML-SSQSSAS-------LEEIAAAS--GGPLWFQLYPPRD 121 (356)
T ss_dssp TTEEESSSEEEEEESTGGGTSTTHHHHHHHHHHHHT-SEEEE-ETTCSSC-------HHHHHHHC--TSEEEEEEEGBSS
T ss_pred CCccCCCCeEEcchhhhhhhccchHHHHHHHHhccC-cceec-cCCccCC-------HHHHHhhc--cCCeEEEEEEecC
Confidence 36788999999999863 2445556667775 43332 2222221 12222222 2789999975 47
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCcccc--------------------------C----------------CC----
Q 017176 76 LDNLAKATELANAYNYDEINLNCGCPSPKVA--------------------------G----------------HG---- 109 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~--------------------------r----------------~g---- 109 (376)
.+...+..++++++||+++-++..+|..-+. + ..
T Consensus 122 ~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 201 (356)
T PF01070_consen 122 RELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGDNGAAAA 201 (356)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG-----CSSSSTSTCHHH
T ss_pred HHHHHHHHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCcccccccccccccccCCCcchhHH
Confidence 7778888899999999999998765531000 0 00
Q ss_pred CccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEc--cCccccCCCCCCCC
Q 017176 110 CFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISPAEN 187 (376)
Q Consensus 110 ~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh--~r~~~~~g~~~~~~ 187 (376)
.|.... .++....+-++.+++.++.||.||--+ +.++. +.+.+.|+++|.|+ |+++...|.
T Consensus 202 ~~~~~~-~~~~~~w~~i~~~~~~~~~pvivKgv~------~~~da-----~~~~~~G~~~i~vs~hGGr~~d~~~----- 264 (356)
T PF01070_consen 202 RFVGSQ-FDPSLTWDDIEWIRKQWKLPVIVKGVL------SPEDA-----KRAVDAGVDGIDVSNHGGRQLDWGP----- 264 (356)
T ss_dssp HHHHCH-B-TT-SHHHHHHHHHHCSSEEEEEEE-------SHHHH-----HHHHHTT-SEEEEESGTGTSSTTS------
T ss_pred HHHHHh-cCCCCCHHHHHHHhcccCCceEEEecc------cHHHH-----HHHHhcCCCEEEecCCCcccCcccc-----
Confidence 000011 144566677899999999999999442 22232 23447999999994 666532221
Q ss_pred CCCCcccHHHHHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017176 188 RTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 188 ~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
...+.+.++++.+. ++|||+.|||+++.|+.+++..|||+|.+||.+|.
T Consensus 265 -----~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~ 314 (356)
T PF01070_consen 265 -----PTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFLY 314 (356)
T ss_dssp -----BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHHH
T ss_pred -----ccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHH
Confidence 12566677766543 79999999999999999999999999999998764
|
These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A .... |
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=99.41 E-value=9e-12 Score=121.71 Aligned_cols=211 Identities=17% Similarity=0.143 Sum_probs=136.5
Q ss_pred CeecCCcEEEccCCCC------ChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecC-CCH
Q 017176 4 RQYLPPWFSVAPMMDW------TDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG-SNL 76 (376)
Q Consensus 4 ~~~l~nri~lAPM~~~------td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g-~~~ 76 (376)
|.++.-|+++||++.. .+....+.+.+.| .-++.+-+ +. ...+.+.+. .+.+..+||+- .|.
T Consensus 68 G~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g-~~~~lSt~-s~-------~slEeva~~--~~~~~wfQlY~~~dr 136 (364)
T PLN02535 68 GYTISAPIMIAPTAMHKLAHPEGEIATARAAAACN-TIMVLSFM-AS-------CTVEEVASS--CNAVRFLQLYVYKRR 136 (364)
T ss_pred CccccccceechHHHhcccCcchHHHHHHHHHHcC-CCeEecCc-cc-------CCHHHHHhc--CCCCeEEEEeccCCH
Confidence 4677889999999752 2344445555554 43333222 11 122333222 24589999996 457
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCcccc----CCC-------Ccc------------cc----c--cCCHHHHHHHHH
Q 017176 77 DNLAKATELANAYNYDEINLNCGCPSPKVA----GHG-------CFG------------VS----L--MLDPKFVGEAMS 127 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~----r~g-------~yG------------~~----l--~~~~~~~~eiv~ 127 (376)
+...+..++++++||.+|-+...+|..-.. |++ .+. .. . .-++.+-.+-++
T Consensus 137 ~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~ 216 (364)
T PLN02535 137 DIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIE 216 (364)
T ss_pred HHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCccccccHHHHHHhccCCCCCHHHHH
Confidence 777888899999999999998888753111 110 000 00 0 013344567788
Q ss_pred HHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-C
Q 017176 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-P 206 (376)
Q Consensus 128 ~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~ 206 (376)
.+++.++.||.||--+ . .++ ++.+.++|+|+|.|++....+.+. .+.....+.++.+.+ .
T Consensus 217 ~lr~~~~~PvivKgV~---~---~~d-----A~~a~~~GvD~I~vsn~GGr~~d~--------~~~t~~~L~ev~~av~~ 277 (364)
T PLN02535 217 WLRSITNLPILIKGVL---T---RED-----AIKAVEVGVAGIIVSNHGARQLDY--------SPATISVLEEVVQAVGG 277 (364)
T ss_pred HHHhccCCCEEEecCC---C---HHH-----HHHHHhcCCCEEEEeCCCcCCCCC--------ChHHHHHHHHHHHHHhc
Confidence 9999899999999322 1 222 223447999999996432111111 122356677776653 3
Q ss_pred CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017176 207 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 207 ~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
++|||+.|||.++.|+.++|..|||+|+|||+++..+.
T Consensus 278 ~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~l~ 315 (364)
T PLN02535 278 RVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIYGLA 315 (364)
T ss_pred CCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHhhhh
Confidence 69999999999999999999999999999999988665
|
|
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.7e-12 Score=120.50 Aligned_cols=208 Identities=16% Similarity=0.151 Sum_probs=134.1
Q ss_pred CeecCCcEEEccCCCC----Ch--HHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecC-CCH
Q 017176 4 RQYLPPWFSVAPMMDW----TD--NHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG-SNL 76 (376)
Q Consensus 4 ~~~l~nri~lAPM~~~----td--~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g-~~~ 76 (376)
|.++.-|+++||++.. .+ ....+.|.+.| .-++.+-+. ....+.+... .+.+...||+- .|.
T Consensus 65 G~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~ag-i~~~lSt~s--------s~slEeIa~a--~~~~~wfQLY~~~Dr 133 (366)
T PLN02979 65 GFKISMPIMVAPTAMQKMAHPDGEYATARAASAAG-TIMTLSSWA--------TSSVEEVAST--GPGIRFFQLYVYKNR 133 (366)
T ss_pred CcccCccceecHHHHHhhCCCChHHHHHHHHHHcC-CCeeeccCc--------CCCHHHHHhc--cCCCeEEEEeecCCH
Confidence 5678889999999742 33 34445555554 434332211 1223333222 24579999985 467
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCcccc----CCC----------Cc-----c-----------cc--ccCCHHHHHH
Q 017176 77 DNLAKATELANAYNYDEINLNCGCPSPKVA----GHG----------CF-----G-----------VS--LMLDPKFVGE 124 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~----r~g----------~y-----G-----------~~--l~~~~~~~~e 124 (376)
+...+..++++++||++|-+...+|..-.. |++ .+ + .. -.-++....+
T Consensus 134 ~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltW~ 213 (366)
T PLN02979 134 NVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWK 213 (366)
T ss_pred HHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHH
Confidence 777788899999999999998887764110 100 00 0 00 0112334457
Q ss_pred HHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhh
Q 017176 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD 204 (376)
Q Consensus 125 iv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 204 (376)
-++.+++.++.||.|| |+-. .++. +.+.++|+|+|.|++....+. + . .+...+.+.++.+.
T Consensus 214 dl~wlr~~~~~PvivK---gV~~---~~dA-----~~a~~~Gvd~I~VsnhGGrql-----d--~-~p~t~~~L~ei~~~ 274 (366)
T PLN02979 214 DVQWLQTITKLPILVK---GVLT---GEDA-----RIAIQAGAAGIIVSNHGARQL-----D--Y-VPATISALEEVVKA 274 (366)
T ss_pred HHHHHHhccCCCEEee---cCCC---HHHH-----HHHHhcCCCEEEECCCCcCCC-----C--C-chhHHHHHHHHHHH
Confidence 7899999999999999 3322 2222 233479999999965422111 1 1 12235666776655
Q ss_pred C-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017176 205 F-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 205 ~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
+ .++|||+.|||++..|+.+++..|||+|++||.++.
T Consensus 275 ~~~~~~Vi~dGGIr~G~Di~KALALGAdaV~iGrp~L~ 312 (366)
T PLN02979 275 TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVF 312 (366)
T ss_pred hCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence 3 369999999999999999999999999999999874
|
|
| >PRK11197 lldD L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=7e-12 Score=123.04 Aligned_cols=205 Identities=17% Similarity=0.164 Sum_probs=131.6
Q ss_pred CeecCCcEEEccCCCC------ChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecC-CCH
Q 017176 4 RQYLPPWFSVAPMMDW------TDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG-SNL 76 (376)
Q Consensus 4 ~~~l~nri~lAPM~~~------td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g-~~~ 76 (376)
|.++.-||++||++.. .+....+.+.+.| ..++.+.+.+ ..++.+.+. .+.+...||+- .|.
T Consensus 66 G~~~~~Pi~iAP~g~~~l~hp~gE~~~AraA~~~g-~~~~lSt~ss--------~slEeia~~--~~~~~wfQlY~~~Dr 134 (381)
T PRK11197 66 GEKLSMPVALAPVGLTGMYARRGEVQAARAADAKG-IPFTLSTVSV--------CPIEEVAPA--IKRPMWFQLYVLRDR 134 (381)
T ss_pred CcccccchhhChHHHhhccCCchHHHHHHHHHHcC-CCEEeeCCCc--------CCHHHHHhc--cCCCeEEEEEecCCH
Confidence 5577889999999742 3455555666665 4444433222 123333222 24589999974 467
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCcccc----CCCCccc-------------------------------cc------
Q 017176 77 DNLAKATELANAYNYDEINLNCGCPSPKVA----GHGCFGV-------------------------------SL------ 115 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~----r~g~yG~-------------------------------~l------ 115 (376)
+...+..++++++||+.|-+...+|..-.. |++ |-. .+
T Consensus 135 ~~~~~li~RA~~aG~~alvlTVD~pv~G~Rerd~rn~-~~~p~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~~~~~~ 213 (381)
T PRK11197 135 GFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSG-MSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGK 213 (381)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCCCChhhhhcC-CCCCCchhhhHHhhhcCchhhhhhccccCCCccccccccccc
Confidence 778888899999999999999888742111 000 000 00
Q ss_pred -cC------------CHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEcc--CccccC
Q 017176 116 -ML------------DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS--RKALLN 180 (376)
Q Consensus 116 -~~------------~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~--r~~~~~ 180 (376)
.. ++.+-.+-++.+++.++.||.+| |+-. .++. +.+.+.|+|+|.|++ +++..
T Consensus 214 ~~g~~~~~~~~~~~~~~~ltW~di~~lr~~~~~pvivK---gV~s---~~dA-----~~a~~~Gvd~I~Vs~hGGr~~d- 281 (381)
T PRK11197 214 PTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIK---GILD---PEDA-----RDAVRFGADGIVVSNHGGRQLD- 281 (381)
T ss_pred ccchhHHHHHHHhccCCCCCHHHHHHHHHhCCCCEEEE---ecCC---HHHH-----HHHHhCCCCEEEECCCCCCCCC-
Confidence 00 11122234788888899999999 3322 2232 223469999999954 43221
Q ss_pred CCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017176 181 GISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 181 g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
+ . +...+.+.++.+.+ .++|||+.|||++..|+.++|..|||+|++||.++.
T Consensus 282 ~--------~-~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l~ 334 (381)
T PRK11197 282 G--------V-LSSARALPAIADAVKGDITILADSGIRNGLDVVRMIALGADTVLLGRAFVY 334 (381)
T ss_pred C--------c-ccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHcCcCceeEhHHHHH
Confidence 1 1 11255666665544 379999999999999999999999999999999864
|
|
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.6e-12 Score=122.30 Aligned_cols=206 Identities=14% Similarity=0.163 Sum_probs=133.8
Q ss_pred CeecCCcEEEccCCCC----C--hHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCC-CH
Q 017176 4 RQYLPPWFSVAPMMDW----T--DNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGS-NL 76 (376)
Q Consensus 4 ~~~l~nri~lAPM~~~----t--d~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~-~~ 76 (376)
|.++.-|+.+||++.. . +....+.|.++| .-++.+-+.+ ..++.+.+. ..+.+..+||+-. |.
T Consensus 81 G~~~~~P~~iAP~g~~~l~~p~gE~a~ArAA~~~g-i~~~lSt~ss--------~slEeIa~~-~~~~~~wfQlY~~~dr 150 (383)
T cd03332 81 GRTLAAPLLLAPIGVQELFHPDAELATARAAAELG-VPYILSTASS--------SSIEDVAAA-AGDAPRWFQLYWPKDD 150 (383)
T ss_pred CccccccceechHHHHHhcCCcHHHHHHHHHHHcC-CCeeecCCCC--------CCHHHHHhh-cCCCCcEEEeeCCCCH
Confidence 5678889999999752 2 344555566654 4444333322 122333222 1245799999875 67
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCcccc----CCCC---------------------c--c---------------cc
Q 017176 77 DNLAKATELANAYNYDEINLNCGCPSPKVA----GHGC---------------------F--G---------------VS 114 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~----r~g~---------------------y--G---------------~~ 114 (376)
+...+..++++++||+.|-++...|..-.. |.+. + + +.
T Consensus 151 ~~~~~ll~RA~~aG~~alvlTVD~pv~g~Rerd~r~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (383)
T cd03332 151 DLTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGYLPFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVAR 230 (383)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCCCCchhhhhcCCCCCccccchhhhhccchhhhccccCCCCCcccccccchhHHH
Confidence 777888899999999999998666532100 0000 0 0 00
Q ss_pred c---cCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEcc--CccccCCCCCCCCCC
Q 017176 115 L---MLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS--RKALLNGISPAENRT 189 (376)
Q Consensus 115 l---~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~--r~~~~~g~~~~~~~~ 189 (376)
. .-++.+-.+-++.+++.++.||.+| |+.+ .++. +.+.+.|+|+|.|++ +.+...
T Consensus 231 ~~~~~~~~~~tW~~i~~lr~~~~~pvivK---gV~~---~~dA-----~~a~~~G~d~I~vsnhGGr~~d~--------- 290 (383)
T cd03332 231 FVSVFSGPSLTWEDLAFLREWTDLPIVLK---GILH---PDDA-----RRAVEAGVDGVVVSNHGGRQVDG--------- 290 (383)
T ss_pred HHHhcCCCCCCHHHHHHHHHhcCCCEEEe---cCCC---HHHH-----HHHHHCCCCEEEEcCCCCcCCCC---------
Confidence 0 0123344577888888889999999 4432 2332 223469999999963 332211
Q ss_pred CCcccHHHHHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHh
Q 017176 190 IPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240 (376)
Q Consensus 190 ~~~~~~~~v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l 240 (376)
.+...+.+.++.+.+. ++|||+.|||++..|+.+++..|||+|++||.++
T Consensus 291 -~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l 341 (383)
T cd03332 291 -SIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLIGRPYA 341 (383)
T ss_pred -CcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence 1223667777766553 5999999999999999999999999999999988
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-11 Score=120.87 Aligned_cols=208 Identities=15% Similarity=0.156 Sum_probs=134.2
Q ss_pred CeecCCcEEEccCCCC----C--hHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecC-CCH
Q 017176 4 RQYLPPWFSVAPMMDW----T--DNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG-SNL 76 (376)
Q Consensus 4 ~~~l~nri~lAPM~~~----t--d~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g-~~~ 76 (376)
|.++.-||++||++.. . +....+.+.+.| ..++.+-+.+ ..++...+. .+.+..+||+- .|.
T Consensus 66 G~~~~~Pi~iAP~g~~~l~hp~gE~a~AraA~~~g-i~~~lSt~ss--------~slEeva~~--~~~~~wfQlY~~~Dr 134 (367)
T PLN02493 66 GFKISMPIMVAPTAMQKMAHPDGEYATARAASAAG-TIMTLSSWAT--------SSVEEVAST--GPGIRFFQLYVYKNR 134 (367)
T ss_pred CccccccceechHHHHhhcCCchHHHHHHHHHHcC-CCeeecCccc--------CCHHHHHhc--CCCCcEEEEeecCCH
Confidence 5678889999999752 2 334455555554 4444433221 123333222 24579999985 467
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCcccc----CCC----------Cc-----c-------cc------ccCCHHHHHH
Q 017176 77 DNLAKATELANAYNYDEINLNCGCPSPKVA----GHG----------CF-----G-------VS------LMLDPKFVGE 124 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~----r~g----------~y-----G-------~~------l~~~~~~~~e 124 (376)
+...+..++++++||.++-+...+|..-.. |++ .+ | .. -.-++..-.+
T Consensus 135 ~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~ 214 (367)
T PLN02493 135 NVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWK 214 (367)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHH
Confidence 777788899999999999998887754100 100 00 0 00 0112334456
Q ss_pred HHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhh
Q 017176 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD 204 (376)
Q Consensus 125 iv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 204 (376)
-++.+|+.++.||.|| |+-. .++. +.+.++|+|.|.|++....+.. .. +...+.+.++.+.
T Consensus 215 di~wlr~~~~~PiivK---gV~~---~~dA-----~~a~~~Gvd~I~VsnhGGrqld-------~~-~~t~~~L~ei~~a 275 (367)
T PLN02493 215 DVQWLQTITKLPILVK---GVLT---GEDA-----RIAIQAGAAGIIVSNHGARQLD-------YV-PATISALEEVVKA 275 (367)
T ss_pred HHHHHHhccCCCEEee---cCCC---HHHH-----HHHHHcCCCEEEECCCCCCCCC-------Cc-hhHHHHHHHHHHH
Confidence 7888999999999999 4322 2332 2334799999999654221111 11 2235667777655
Q ss_pred C-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017176 205 F-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 205 ~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
+ .++|||+.|||++..|+.+++..|||+|+|||.++.
T Consensus 276 v~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~ 313 (367)
T PLN02493 276 TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVF 313 (367)
T ss_pred hCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence 3 369999999999999999999999999999999874
|
|
| >cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS) | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.4e-12 Score=121.49 Aligned_cols=194 Identities=15% Similarity=0.119 Sum_probs=125.4
Q ss_pred CCcEEEccCCCCCh-HHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCH-HHHHHHHHH
Q 017176 8 PPWFSVAPMMDWTD-NHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNL-DNLAKATEL 85 (376)
Q Consensus 8 ~nri~lAPM~~~td-~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~-~~~~~aa~~ 85 (376)
+.||+++||.++++ ..|...+.+.||.|++-....+.+.+-....++.++ -.++|++++|....+ +.+.+..+.
T Consensus 2 ~yPIiqgpM~~vs~~~~LaaAVS~AGgLG~la~~~~~~e~l~~~i~~~~~l----~tdkPfGVnl~~~~~~~~~~~~l~v 77 (320)
T cd04743 2 RYPIVQGPMTRVSDVAEFAVAVAEGGGLPFIALALMRGEQVKALLEETAEL----LGDKPWGVGILGFVDTELRAAQLAV 77 (320)
T ss_pred CCCEECCCcCCCCCcHHHHHHHHhCCccccCCCCCCCHHHHHHHHHHHHHh----ccCCCeEEEEeccCCCcchHHHHHH
Confidence 67999999999998 899999999999998766665544321111111111 157899999965321 224556667
Q ss_pred HHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcC
Q 017176 86 ANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLS 165 (376)
Q Consensus 86 ~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~ 165 (376)
+.+.+.+.|.+.+|.|.. ++.+++ .++.+...+. +..+ ++.+++.
T Consensus 78 i~e~~v~~V~~~~G~P~~----------------------~~~lk~-~Gi~v~~~v~-------s~~~-----A~~a~~~ 122 (320)
T cd04743 78 VRAIKPTFALIAGGRPDQ----------------------ARALEA-IGISTYLHVP-------SPGL-----LKQFLEN 122 (320)
T ss_pred HHhcCCcEEEEcCCChHH----------------------HHHHHH-CCCEEEEEeC-------CHHH-----HHHHHHc
Confidence 777888988887665531 122332 3566654332 2222 2345689
Q ss_pred CccEEEEccCccccCCCCCCCCCCCCcccHHHHHH-HHhh-----CCCCeEEEecCCCCHHHHHHHHHcCc--------C
Q 017176 166 PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA-LLRD-----FPDLTFTLNGGINTVDEVNAALRKGA--------H 231 (376)
Q Consensus 166 Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~-~~~~-----~~~ipVi~nGgI~s~~da~~~l~~Ga--------d 231 (376)
|+|.|++.|... +|+.+.. ... .+ +..+.. +.+. ..++|||+.|||.|...+..++..|| +
T Consensus 123 GaD~vVaqG~EA--GGH~G~~-~t~-~L-~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~ 197 (320)
T cd04743 123 GARKFIFEGREC--GGHVGPR-SSF-VL-WESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAKV 197 (320)
T ss_pred CCCEEEEecCcC--cCCCCCC-Cch-hh-HHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHHcCCccccccccc
Confidence 999999999875 3432210 111 11 222211 2111 13799999999999999999998777 8
Q ss_pred eeEEchHHhhCCch
Q 017176 232 HVMVGRAAYQNPWY 245 (376)
Q Consensus 232 ~VmiGRa~l~~P~l 245 (376)
+|+||+.++..+..
T Consensus 198 GV~mGTrFl~t~Es 211 (320)
T cd04743 198 GVLMGTAYLFTEEA 211 (320)
T ss_pred EEEEccHHhcchhh
Confidence 99999999988775
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >KOG0134 consensus NADH:flavin oxidoreductase/12-oxophytodienoate reductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.1e-12 Score=123.17 Aligned_cols=169 Identities=14% Similarity=0.108 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHCCCCEEEecCC---------CCCccccCCCCccccccCCHHHHHHHHHHHhcccC--ccEEEEecCC-
Q 017176 77 DNLAKATELANAYNYDEINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIG- 144 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~g---------cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~--~pv~vKiR~g- 144 (376)
+.|+.||+.+.++|||+||||.. .|.. +.|+|+||++++||.+++.|++++|++.++ .+..+-.+.+
T Consensus 174 Drfv~Aak~~~e~GFDGVEIHgAhGYLl~QFlsp~~-NdRtDeYGGSieNR~Rf~lEv~daVr~~Ip~s~~~l~~~~~~~ 252 (400)
T KOG0134|consen 174 DRFVYAAKAAYECGFDGVEIHGAHGYLLDQFLSPTT-NDRTDEYGGSIENRCRFPLEVVDAVRKEIPASRVFLRGSPTNE 252 (400)
T ss_pred HHHHHHHHHHHhcCCCeEEEecccchhhhhhccCCC-CCcccccCcchhhhhhhhHHHHHHHHHhhccccceEEecCchh
Confidence 56777888888999999999976 4553 578999999999999999999999999863 2222322321
Q ss_pred CCCC-ccHHHHHHHHHHHhhcCCccEEEEccCccc-cCCCCCCCCCCCCccc----HHHHHHHHhhCCCCeEEEecCCCC
Q 017176 145 VDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSRKAL-LNGISPAENRTIPPLK----YEYYYALLRDFPDLTFTLNGGINT 218 (376)
Q Consensus 145 ~~~~-~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~-~~g~~~~~~~~~~~~~----~~~v~~~~~~~~~ipVi~nGgI~s 218 (376)
+.+. .+.++.. ..+.++++.|+|.+-+.|++.. +.+.. ..+...+.. .+....+.+.+.+.-|.++|+.++
T Consensus 253 fq~~~~t~d~~~-~~~~~y~~~g~df~~l~~g~~~~~~h~i--~~R~~~~~~~~~~~~f~e~~r~~~kgt~v~a~g~~~t 329 (400)
T KOG0134|consen 253 FQDIGITIDDAI-KMCGLYEDGGLDFVELTGGTFLAYVHFI--EPRQSTIAREAFFVEFAETIRPVFKGTVVYAGGGGRT 329 (400)
T ss_pred hhhccccccchH-HHHHHHHhcccchhhccCchhhhhhhhc--cccccccccccchhhhhhHHHHHhcCcEEEecCCccC
Confidence 1111 1222322 2345677889997766665531 11000 001100111 122233444453444557789999
Q ss_pred HHHHHHHHH-cCcCeeEEchHHhhCCchhhHh
Q 017176 219 VDEVNAALR-KGAHHVMVGRAAYQNPWYTLGH 249 (376)
Q Consensus 219 ~~da~~~l~-~Gad~VmiGRa~l~~P~lf~~~ 249 (376)
.+.+.++++ ...|+|.+||.+++||+|..+.
T Consensus 330 ~~~~~eav~~~~T~~ig~GR~f~anPDLp~rl 361 (400)
T KOG0134|consen 330 REAMVEAVKSGRTDLIGYGRPFLANPDLPKRL 361 (400)
T ss_pred HHHHHHHHhcCCceeEEecchhccCCchhHHH
Confidence 999999999 5578999999999999997553
|
|
| >cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.7e-11 Score=119.91 Aligned_cols=221 Identities=11% Similarity=0.080 Sum_probs=128.7
Q ss_pred eecCCcEEEccCC-CCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCC--CHHHHHH
Q 017176 5 QYLPPWFSVAPMM-DWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGS--NLDNLAK 81 (376)
Q Consensus 5 ~~l~nri~lAPM~-~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~--~~~~~~~ 81 (376)
+.++.||+++||+ |+|+..+...+.++||.|++-+...+.+.+-.....+++.+ ..++|+++||+.+ +++...+
T Consensus 10 lgiryPii~gpMa~Giss~eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~l---t~~~PfGVNL~~~~~~~~~e~~ 86 (418)
T cd04742 10 YGLRYAYVAGAMARGIASAELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAAL---GNGEPYGVNLIHSPDEPELEEG 86 (418)
T ss_pred hCCCccEECCcccCCCCCHHHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhc---cCCCCeEEeeecCCCCchhHHH
Confidence 4578899999999 79999999999999999999888877654432222222211 2278999999964 3444455
Q ss_pred HHHHHHHCCCCEEEecC-CCCCccccC-CCCccccccCCHHHHHHHHHHHhcccCccEEEEec--------CCCCCCccH
Q 017176 82 ATELANAYNYDEINLNC-GCPSPKVAG-HGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR--------IGVDDHDSY 151 (376)
Q Consensus 82 aa~~~~~~G~d~IeiN~-gcP~~~v~r-~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR--------~g~~~~~~~ 151 (376)
..+.+.+.|...|+... +-|.+.+.+ +.. |-....+-+. .....|..|+. +|......+
T Consensus 87 ~v~l~le~gV~~ve~sa~~~~~p~~~~~r~~-G~~~~~~g~~----------~~~~~ViakVsr~evAs~~f~ppp~~~v 155 (418)
T cd04742 87 LVDLFLRHGVRVVEASAFMQLTPALVRYRAK-GLRRDADGRV----------QIANRIIAKVSRPEVAEAFMSPAPERIL 155 (418)
T ss_pred HHHHHHHcCCCEEEeccccCCCcchhhHHhc-CCcccccccc----------cccceEEEecCChhhhhhhcCCCCHHHH
Confidence 67788888999888753 222211111 011 1100000000 00122333321 111111111
Q ss_pred HHHHH------HHHHHhhcCC-ccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-------CCCeEEEecCCC
Q 017176 152 NQLCD------FIYKVSSLSP-TRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-------PDLTFTLNGGIN 217 (376)
Q Consensus 152 ~~~~~------~i~~~~e~~G-vd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-------~~ipVi~nGgI~ 217 (376)
.++.+ .-++++++.| +|.|++.. . -+|+.+. ... ..-+..+.+++.+. .++|||+.|||.
T Consensus 156 ~~L~~~G~it~~eA~~A~~~g~aD~Ivvq~-E--AGGH~g~--~~~-~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~ 229 (418)
T cd04742 156 KKLLAEGKITEEQAELARRVPVADDITVEA-D--SGGHTDN--RPL-SVLLPTIIRLRDELAARYGYRRPIRVGAAGGIG 229 (418)
T ss_pred HHHHHcCCCCHHHHHHHHhCCCCCEEEEcc-c--CCCCCCC--ccH-HhHHHHHHHHHHHHhhccccCCCceEEEECCCC
Confidence 11110 0133456678 59999973 2 2343221 110 01122333333222 269999999999
Q ss_pred CHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 218 TVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 218 s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
|++++..++..|||+|++|+.++..+.-
T Consensus 230 tg~~vaAA~alGAd~V~~GT~flat~Ea 257 (418)
T cd04742 230 TPEAAAAAFALGADFIVTGSINQCTVEA 257 (418)
T ss_pred CHHHHHHHHHcCCcEEeeccHHHhCccc
Confidence 9999999999999999999999998765
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.8e-11 Score=113.94 Aligned_cols=197 Identities=13% Similarity=0.071 Sum_probs=129.0
Q ss_pred CCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhc-cCCCCCCEEEEec-CCCHHHHH
Q 017176 3 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA-FSPEQHPIVLQIG-GSNLDNLA 80 (376)
Q Consensus 3 ~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~-~~~~~~p~~vQL~-g~~~~~~~ 80 (376)
.++.++-|++.++|.+..+..+...+++.|+.+.+.= | ..+ ....+.+ .++. .+.+.+. |.+++++.
T Consensus 32 ~~~~l~~P~~inAM~t~iN~~LA~~a~~~G~~~~~~k-~-~~e-------~~~~~~r~~~~~--~l~v~~~vg~~~~~~~ 100 (326)
T PRK05458 32 GPRTFKLPVVPANMQTIIDEKIAEWLAENGYFYIMHR-F-DPE-------ARIPFIKDMHEQ--GLIASISVGVKDDEYD 100 (326)
T ss_pred CCcEecCcEEEecccchhHHHHHHHHHHcCCEEEEec-C-CHH-------HHHHHHHhcccc--ccEEEEEecCCHHHHH
Confidence 4678889999999988889999998998887765533 2 211 1122221 1222 2345554 44577776
Q ss_pred HHHHHHHH-CCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC-ccEEEEecCCCCCCccHHHHHHHH
Q 017176 81 KATELANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDFI 158 (376)
Q Consensus 81 ~aa~~~~~-~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~-~pv~vKiR~g~~~~~~~~~~~~~i 158 (376)
++.++++. .|.|.|.|.+..| +...+.++++.+++..+ .||.++- + .+.++..
T Consensus 101 ~~~~Lv~ag~~~d~i~iD~a~g----------------h~~~~~e~I~~ir~~~p~~~vi~g~---V---~t~e~a~--- 155 (326)
T PRK05458 101 FVDQLAAEGLTPEYITIDIAHG----------------HSDSVINMIQHIKKHLPETFVIAGN---V---GTPEAVR--- 155 (326)
T ss_pred HHHHHHhcCCCCCEEEEECCCC----------------chHHHHHHHHHHHhhCCCCeEEEEe---c---CCHHHHH---
Confidence 66665543 2459999865332 23567888999998874 7787751 1 1333332
Q ss_pred HHHhhcCCccEEEEccCcc---cc---CCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCe
Q 017176 159 YKVSSLSPTRHFIIHSRKA---LL---NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH 232 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~---~~---~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~ 232 (376)
.+.++|+|++.|+.+.. .. .|.. .+...+..+.++++.. ++|||++|||.++.|+.+++..|||+
T Consensus 156 --~l~~aGad~i~vg~~~G~~~~t~~~~g~~------~~~w~l~ai~~~~~~~-~ipVIAdGGI~~~~Di~KaLa~GA~a 226 (326)
T PRK05458 156 --ELENAGADATKVGIGPGKVCITKIKTGFG------TGGWQLAALRWCAKAA-RKPIIADGGIRTHGDIAKSIRFGATM 226 (326)
T ss_pred --HHHHcCcCEEEECCCCCcccccccccCCC------CCccHHHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHHHhCCCE
Confidence 23479999999873321 11 1211 1111233577777654 89999999999999999999999999
Q ss_pred eEEchHHhhCCc
Q 017176 233 VMVGRAAYQNPW 244 (376)
Q Consensus 233 VmiGRa~l~~P~ 244 (376)
||+|+.++....
T Consensus 227 V~vG~~~~~~~e 238 (326)
T PRK05458 227 VMIGSLFAGHEE 238 (326)
T ss_pred EEechhhcCCcc
Confidence 999999885443
|
|
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.4e-11 Score=117.44 Aligned_cols=203 Identities=12% Similarity=0.112 Sum_probs=125.1
Q ss_pred CCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhh------------------------
Q 017176 3 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFL------------------------ 58 (376)
Q Consensus 3 ~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~------------------------ 58 (376)
..+.++-||+.|||.++|+..+.....+.||.|++-. ..+++.+...-++.++..
T Consensus 37 ~~l~l~iPIvsApMd~Vt~~~lA~AvA~aGGlGvI~~-~~~~e~l~~eI~~vk~~~~~~~i~~~~d~~~~~~~~~t~~~~ 115 (404)
T PRK06843 37 KNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHK-NMSIEAQRKEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQH 115 (404)
T ss_pred hccCCCCCEecCCCCCCCCHHHHHHHHHCCCEEEecC-CCCHHHHHHHHHHHHhhcCCCceeecccccccchhheecccc
Confidence 3566788999999999999999999999999997753 333433221111111100
Q ss_pred --------------c----cCC-CCCC-EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCC
Q 017176 59 --------------A----FSP-EQHP-IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLD 118 (376)
Q Consensus 59 --------------~----~~~-~~~p-~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~ 118 (376)
. ..+ .++- +++-+ |..++.+.+ ++.+.++|+|.|-|-++.+ +
T Consensus 116 ~~~~~~~~d~~~~~~~~~a~~d~~~~l~v~aav-g~~~~~~~~-v~~lv~aGvDvI~iD~a~g----------------~ 177 (404)
T PRK06843 116 LEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAV-SIDIDTIER-VEELVKAHVDILVIDSAHG----------------H 177 (404)
T ss_pred chHHHHHhhhhhhhhcchhhhhhhcCeEEEEEE-eCCHHHHHH-HHHHHhcCCCEEEEECCCC----------------C
Confidence 0 000 1111 11112 335665544 4445568999998854321 2
Q ss_pred HHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCc------cccCCCCCCCCCCCC
Q 017176 119 PKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK------ALLNGISPAENRTIP 191 (376)
Q Consensus 119 ~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~------~~~~g~~~~~~~~~~ 191 (376)
.+.+.++++.+++.. +.++.++- ..+.++.. .+.++|+|+|.+.-+. +...|.. .+
T Consensus 178 ~~~~~~~v~~ik~~~p~~~vi~g~------V~T~e~a~-----~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g------~p 240 (404)
T PRK06843 178 STRIIELVKKIKTKYPNLDLIAGN------IVTKEAAL-----DLISVGADCLKVGIGPGSICTTRIVAGVG------VP 240 (404)
T ss_pred ChhHHHHHHHHHhhCCCCcEEEEe------cCCHHHHH-----HHHHcCCCEEEECCCCCcCCcceeecCCC------CC
Confidence 356788899998876 56666641 13344432 2346899999873111 1111111 11
Q ss_pred cccHHH---HHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017176 192 PLKYEY---YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 192 ~~~~~~---v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
.+.. +.++.+.. ++|||+.|||.++.|+.+++..|||+||+|+.+.....
T Consensus 241 --~ltai~~v~~~~~~~-~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~agt~E 293 (404)
T PRK06843 241 --QITAICDVYEVCKNT-NICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKE 293 (404)
T ss_pred --hHHHHHHHHHHHhhc-CCeEEEeCCCCCHHHHHHHHHcCCCEEEEcceeeeeec
Confidence 1333 34444443 79999999999999999999999999999999988544
|
|
| >cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.8e-11 Score=116.84 Aligned_cols=116 Identities=18% Similarity=0.195 Sum_probs=79.0
Q ss_pred CCHHHHHHHHHHHhcccC-ccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCC---CCCCCCc
Q 017176 117 LDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA---ENRTIPP 192 (376)
Q Consensus 117 ~~~~~~~eiv~~v~~~~~-~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~---~~~~~~~ 192 (376)
.+++.+.++++.+|+.++ +||.+|.-.+. + .+++ +++++..|+|+|+|.|..... +..+. ++..++.
T Consensus 196 ~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~-~---~~~~----a~~~~~~g~D~I~VsG~~Ggt-g~~~~~~~~~~g~pt 266 (392)
T cd02808 196 YSIEDLAQLIEDLREATGGKPIGVKLVAGH-G---EGDI----AAGVAAAGADFITIDGAEGGT-GAAPLTFIDHVGLPT 266 (392)
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEEECCCC-C---HHHH----HHHHHHcCCCEEEEeCCCCCC-CCCcccccccCCccH
Confidence 466788999999999987 99999988753 2 2233 344556779999998764211 11100 0011111
Q ss_pred ccHHHHHHHHh---hC---CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017176 193 LKYEYYYALLR---DF---PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 193 ~~~~~v~~~~~---~~---~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
...+.++.+ .. .++|||++|||.|+.|+.+++..|||+|.+||++|.--
T Consensus 267 --~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~al 321 (392)
T cd02808 267 --ELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALIAL 321 (392)
T ss_pred --HHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHHHhc
Confidence 223333322 11 26999999999999999999999999999999999643
|
GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. |
| >COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4e-11 Score=116.56 Aligned_cols=201 Identities=14% Similarity=0.117 Sum_probs=122.8
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCC------
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN------ 75 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~------ 75 (376)
+..+.++.||+++||..+|+..+...+.+.||.|.+-.-....+.+-.. ..+. ....++|...+.+++.
T Consensus 8 ~~~~~i~~PIiq~gM~~vs~~~LA~Avs~aGglG~ia~~~~~~e~l~~~---i~~~--~~~~~~p~~~~~f~~~~~~v~~ 82 (336)
T COG2070 8 ILLLGIKYPIIQGGMAGVSTPELAAAVSNAGGLGIIASGGLPAEQLRAE---IRKI--RALTDKPFVANNFGSAPAPVNV 82 (336)
T ss_pred hcccCccCCeecCCccccCcHHHHHHHhccCCccccccccCCHHHHHHH---HHHH--HHhcCCcchhcccccccccchh
Confidence 3567788999999999999999999999999999443333332211111 1111 1123455444444421
Q ss_pred ------HHHHHHHHHHH-HHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCC
Q 017176 76 ------LDNLAKATELA-NAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH 148 (376)
Q Consensus 76 ------~~~~~~aa~~~-~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~ 148 (376)
...+.+....+ +.+|...+-..+|-| | .+.++.++. .+..+..++..
T Consensus 83 ~~l~~~~~~~~~~~~~ii~~~~vpvv~~~~g~~-----------------~---~~~i~~~~~-~g~~v~~~v~~----- 136 (336)
T COG2070 83 NILVARRNAAEAGVDAIIEGAGVPVVSTSFGAP-----------------P---AEFVARLKA-AGIKVIHSVIT----- 136 (336)
T ss_pred heecccccchHHhhhhHHhcCCCCEEeccCCCC-----------------c---HHHHHHHHH-cCCeEEEEeCC-----
Confidence 12333333332 333554444444321 1 123344433 35555554332
Q ss_pred ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCC-CeEEEecCCCCHHHHHHHHH
Q 017176 149 DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD-LTFTLNGGINTVDEVNAALR 227 (376)
Q Consensus 149 ~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~-ipVi~nGgI~s~~da~~~l~ 227 (376)
..+ ++..++.|+|.|+++|-.. +|+.+. ....+....++.++++.+ + ||||+.|||.|.+++..++.
T Consensus 137 --~~~-----A~~~~~~G~d~vI~~g~eA--GGH~g~--~~~~~~t~~Lv~ev~~~~-~~iPViAAGGI~dg~~i~AAla 204 (336)
T COG2070 137 --VRE-----ALKAERAGADAVIAQGAEA--GGHRGG--VDLEVSTFALVPEVVDAV-DGIPVIAAGGIADGRGIAAALA 204 (336)
T ss_pred --HHH-----HHHHHhCCCCEEEecCCcC--CCcCCC--CCCCccHHHHHHHHHHHh-cCCCEEEecCccChHHHHHHHH
Confidence 111 3445689999999998754 333221 011122356778888876 6 99999999999999999999
Q ss_pred cCcCeeEEchHHhhCCch
Q 017176 228 KGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 228 ~Gad~VmiGRa~l~~P~l 245 (376)
.|||+|++|+.++.....
T Consensus 205 lGA~gVq~GT~Fl~t~Ea 222 (336)
T COG2070 205 LGADGVQMGTRFLATKEA 222 (336)
T ss_pred hccHHHHhhhhhhccccc
Confidence 999999999999987654
|
|
| >TIGR02814 pfaD_fam PfaD family protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-10 Score=115.90 Aligned_cols=216 Identities=12% Similarity=0.049 Sum_probs=125.1
Q ss_pred eecCCcEEEccCC-CCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCC-EEEEecCCC--HHHHH
Q 017176 5 QYLPPWFSVAPMM-DWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHP-IVLQIGGSN--LDNLA 80 (376)
Q Consensus 5 ~~l~nri~lAPM~-~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p-~~vQL~g~~--~~~~~ 80 (376)
+.++.||+.+||+ |+|+..+...+.++||.|++-+...+.+.+-.....+++.+ .+.| +++||+.+. ++.-.
T Consensus 15 lgiryPiiqgpMa~GiSs~eLVaAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~----~~~p~fGVNL~~~~~~~~~e~ 90 (444)
T TIGR02814 15 YGVRYAYVAGAMANGIASAELVIAMGRAGILGFFGAGGLPLEEVEQAIHRIQQAL----PGGPAYGVNLIHSPSDPALEW 90 (444)
T ss_pred hCCCCcEECccccCCCCCHHHHHHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhc----CCCCceEEEecccCCCcccHH
Confidence 4578899999999 79999999999999999999888777654433322222221 2335 999999753 32233
Q ss_pred HHHHHHHHCCCCEEEecCC---CCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec--------CCCCCCc
Q 017176 81 KATELANAYNYDEINLNCG---CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR--------IGVDDHD 149 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~g---cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR--------~g~~~~~ 149 (376)
+..+.+.+.|.+.|+...+ .|.. +.-+.. |.....+-+. ....+|..|+. ++.....
T Consensus 91 ~~v~l~l~~~V~~veasa~~~~~p~~-v~~r~~-G~~~~~~g~~----------~~~~~ViakVsr~~vAs~f~~p~p~~ 158 (444)
T TIGR02814 91 GLVDLLLRHGVRIVEASAFMQLTPAL-VRYRAK-GLHRDADGRV----------VIRNRLIAKVSRPEVAEAFMSPAPAH 158 (444)
T ss_pred HHHHHHHHcCCCEEEeccccCCCcch-hhhhhc-cccccccccc----------cccceEEEecCCHHHHHHhcCCCcHH
Confidence 4556677889999988643 3321 110111 1100000000 00112333321 0110000
Q ss_pred cHHHHHH------HHHHHhhcCC-ccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHH---hhC-------CCCeEEE
Q 017176 150 SYNQLCD------FIYKVSSLSP-TRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL---RDF-------PDLTFTL 212 (376)
Q Consensus 150 ~~~~~~~------~i~~~~e~~G-vd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~---~~~-------~~ipVi~ 212 (376)
.++.+.+ .-+.++++.| +|.|++.. . -+|+.+. .+ .+.++..+. ... ..||||+
T Consensus 159 ~v~~L~~~G~it~eEA~~a~~~g~aD~Ivve~-E--AGGHtg~----~~--~~~Llp~i~~lrd~v~~~~~y~~~VpViA 229 (444)
T TIGR02814 159 ILQKLLAEGRITREEAELARRVPVADDICVEA-D--SGGHTDN----RP--LVVLLPAIIRLRDTLMRRYGYRKPIRVGA 229 (444)
T ss_pred HHHHHHHcCCCCHHHHHHHHhCCCCcEEEEec-c--CCCCCCC----Cc--HHHHHHHHHHHHHHHhhcccCCCCceEEE
Confidence 0111100 0123456778 49998862 2 2343221 11 134444442 221 2689999
Q ss_pred ecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 213 NGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 213 nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
.|||.|++++..++..|||+|++|+.++..+.-
T Consensus 230 AGGI~t~~~vaAAlaLGAdgV~~GT~flat~Es 262 (444)
T TIGR02814 230 AGGIGTPEAAAAAFMLGADFIVTGSVNQCTVEA 262 (444)
T ss_pred eCCCCCHHHHHHHHHcCCcEEEeccHHHhCccc
Confidence 999999999999999999999999999998764
|
The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se. |
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-10 Score=109.18 Aligned_cols=177 Identities=15% Similarity=0.206 Sum_probs=114.9
Q ss_pred HHHhCCCcEEEecceeecccccccc-hhhhhhccCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCcccc
Q 017176 28 ARLISKHAWLYTEMLAAETIIYQQG-NLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVA 106 (376)
Q Consensus 28 ~~~~Gg~gl~~te~v~~~~~~~~~~-~~~~~~~~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~ 106 (376)
....|.-.+++|..-........+. -+.++.+. ...| +|+.| ....+.++.+. .++|++.|.||
T Consensus 39 ~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~--~~~p--v~~gG-Gi~s~~d~~~l-~~~G~~~vvig--------- 103 (258)
T PRK01033 39 FNEKEVDELIVLDIDASKRGSEPNYELIENLASE--CFMP--LCYGG-GIKTLEQAKKI-FSLGVEKVSIN--------- 103 (258)
T ss_pred HHHcCCCEEEEEECCCCcCCCcccHHHHHHHHHh--CCCC--EEECC-CCCCHHHHHHH-HHCCCCEEEEC---------
Confidence 4556633466666654432111111 11222221 2344 46665 34444444444 46799999886
Q ss_pred CCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCC-----------CCC--CccHHHHHHHHHHHhhcCCccEEEEc
Q 017176 107 GHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG-----------VDD--HDSYNQLCDFIYKVSSLSPTRHFIIH 173 (376)
Q Consensus 107 r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g-----------~~~--~~~~~~~~~~i~~~~e~~Gvd~I~vh 173 (376)
++++.+|+++.++++...+. .+++++++|.| |.+ .....++ .+.+++.|++.|++|
T Consensus 104 ------s~~~~~~~~~~~~~~~~~~~-~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~----~~~~~~~g~~~ii~~ 172 (258)
T PRK01033 104 ------TAALEDPDLITEAAERFGSQ-SVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLEL----AKEYEALGAGEILLN 172 (258)
T ss_pred ------hHHhcCHHHHHHHHHHhCCC-cEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHH----HHHHHHcCCCEEEEE
Confidence 34567899999999988532 26777777765 212 1223333 334568999999999
Q ss_pred cCcc--ccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHH-HcCcCeeEEchHHhhC
Q 017176 174 SRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL-RKGAHHVMVGRAAYQN 242 (376)
Q Consensus 174 ~r~~--~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l-~~Gad~VmiGRa~l~~ 242 (376)
+++. .++|. +|+.+.++++. +++|||++|||.+.+|+.+++ +.|||+|.+|+++.-.
T Consensus 173 ~i~~~G~~~G~-----------d~~~i~~~~~~-~~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~~ 232 (258)
T PRK01033 173 SIDRDGTMKGY-----------DLELLKSFRNA-LKIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVFK 232 (258)
T ss_pred ccCCCCCcCCC-----------CHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeeeC
Confidence 8875 33331 38888888776 589999999999999999999 4999999999998765
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-10 Score=107.79 Aligned_cols=127 Identities=13% Similarity=0.164 Sum_probs=89.2
Q ss_pred HCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhc-ccCccEEEEe----------cCCCCCCccHHHHHH
Q 017176 88 AYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-NTNVPVSVKC----------RIGVDDHDSYNQLCD 156 (376)
Q Consensus 88 ~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~-~~~~pv~vKi----------R~g~~~~~~~~~~~~ 156 (376)
+.|+|.|.++ ..++.+|+.+.++++.+.+ .+-+++.+|. |.++++. . .+..+
T Consensus 91 ~~G~~~v~ig---------------~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~-~-~~~~~ 153 (243)
T cd04731 91 RAGADKVSIN---------------SAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPT-G-LDAVE 153 (243)
T ss_pred HcCCceEEEC---------------chhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceec-C-CCHHH
Confidence 4688888775 3455789999999998853 3445555554 4333321 1 12222
Q ss_pred HHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEE
Q 017176 157 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV 235 (376)
Q Consensus 157 ~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~Vmi 235 (376)
+ .+.+++.|+|.|++|+++.. |.. ...+++.+.++.+.. ++|||++|||++++|+.++++ +|||+||+
T Consensus 154 ~-~~~l~~~G~d~i~v~~i~~~--g~~-------~g~~~~~i~~i~~~~-~~pvia~GGi~~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 154 W-AKEVEELGAGEILLTSMDRD--GTK-------KGYDLELIRAVSSAV-NIPVIASGGAGKPEHFVEAFEEGGADAALA 222 (243)
T ss_pred H-HHHHHHCCCCEEEEeccCCC--CCC-------CCCCHHHHHHHHhhC-CCCEEEeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 2 34456899999999997742 211 112478888887754 899999999999999999999 69999999
Q ss_pred chHHhhC
Q 017176 236 GRAAYQN 242 (376)
Q Consensus 236 GRa~l~~ 242 (376)
||+++..
T Consensus 223 g~al~~~ 229 (243)
T cd04731 223 ASIFHFG 229 (243)
T ss_pred eHHHHcC
Confidence 9998654
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.7e-09 Score=103.86 Aligned_cols=196 Identities=13% Similarity=0.114 Sum_probs=127.7
Q ss_pred CCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhc-cCCCCCCEEEEecCCCHHHHHH
Q 017176 3 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA-FSPEQHPIVLQIGGSNLDNLAK 81 (376)
Q Consensus 3 ~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~-~~~~~~p~~vQL~g~~~~~~~~ 81 (376)
.++.+.-|++.+.|.+..+..+...+++.|+.+.+ -.+ .++.. ..+++ .++..-++++.+ |..++++.+
T Consensus 29 ~~~~l~~P~~inAM~t~in~~LA~~a~~~G~~~i~-hK~-~~E~~-------~sfvrk~k~~~L~v~~Sv-G~t~e~~~r 98 (321)
T TIGR01306 29 GKHKFKLPVVPANMQTIIDEKLAEQLAENGYFYIM-HRF-DEESR-------IPFIKDMQERGLFASISV-GVKACEYEF 98 (321)
T ss_pred CCcEecCcEEeeccchhhhHHHHHHHHHcCCEEEE-ecC-CHHHH-------HHHHHhccccccEEEEEc-CCCHHHHHH
Confidence 46788999999999988999999999988865443 332 22211 11222 222222223322 667888888
Q ss_pred HHHHHHHCC--CCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHH
Q 017176 82 ATELANAYN--YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 159 (376)
Q Consensus 82 aa~~~~~~G--~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~ 159 (376)
+..+++. | .|.|-+-.. + | +.+.+.+.++.+++.+..|+.++=- +. +.+. +
T Consensus 99 ~~~lv~a-~~~~d~i~~D~a--------h---g-----~s~~~~~~i~~i~~~~p~~~vi~Gn--V~---t~e~-----a 151 (321)
T TIGR01306 99 VTQLAEE-ALTPEYITIDIA--------H---G-----HSNSVINMIKHIKTHLPDSFVIAGN--VG---TPEA-----V 151 (321)
T ss_pred HHHHHhc-CCCCCEEEEeCc--------c---C-----chHHHHHHHHHHHHhCCCCEEEEec--CC---CHHH-----H
Confidence 8877655 5 587766421 1 2 3577889999999988666544422 22 2322 2
Q ss_pred HHhhcCCccEEEEc---cCcc---ccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCee
Q 017176 160 KVSSLSPTRHFIIH---SRKA---LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV 233 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh---~r~~---~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~V 233 (376)
+.+.++|+|.|.|+ |+.. ...|... +......+.++++.. ++|||++|||++..|+.++|..|||+|
T Consensus 152 ~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~------~~~~l~ai~ev~~a~-~~pVIadGGIr~~~Di~KALa~GAd~V 224 (321)
T TIGR01306 152 RELENAGADATKVGIGPGKVCITKIKTGFGT------GGWQLAALRWCAKAA-RKPIIADGGIRTHGDIAKSIRFGASMV 224 (321)
T ss_pred HHHHHcCcCEEEECCCCCccccceeeeccCC------CchHHHHHHHHHHhc-CCeEEEECCcCcHHHHHHHHHcCCCEE
Confidence 23457999999998 3321 1112111 111135677777654 899999999999999999999999999
Q ss_pred EEchHHhhC
Q 017176 234 MVGRAAYQN 242 (376)
Q Consensus 234 miGRa~l~~ 242 (376)
|+||.+-+.
T Consensus 225 mig~~~ag~ 233 (321)
T TIGR01306 225 MIGSLFAGH 233 (321)
T ss_pred eechhhcCc
Confidence 999887654
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.5e-10 Score=104.74 Aligned_cols=147 Identities=21% Similarity=0.290 Sum_probs=97.8
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhc-ccCccEEEE----e
Q 017176 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-NTNVPVSVK----C 141 (376)
Q Consensus 67 ~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~-~~~~pv~vK----i 141 (376)
+-+|+.|. .....++ +.+.+.|+|.|-+ |.+++.+|+++.++.+.+.+ .+-+++.+| +
T Consensus 74 ~pv~~~Gg-I~~~e~~-~~~~~~Gad~vvi---------------gs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~ 136 (234)
T cd04732 74 IPVQVGGG-IRSLEDI-ERLLDLGVSRVII---------------GTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVA 136 (234)
T ss_pred CCEEEeCC-cCCHHHH-HHHHHcCCCEEEE---------------CchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEE
Confidence 33566553 2222333 3334578888743 55667789999999988754 222222222 2
Q ss_pred cCCCCCC--ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCH
Q 017176 142 RIGVDDH--DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV 219 (376)
Q Consensus 142 R~g~~~~--~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~ 219 (376)
+.+|.+. .+..+++ +.+++.|++.|++|.++..... .+ .+++.+.++++.. ++||+++|||.+.
T Consensus 137 ~~~~~~~~~~~~~~~~----~~~~~~ga~~iii~~~~~~g~~-~g--------~~~~~i~~i~~~~-~ipvi~~GGi~~~ 202 (234)
T cd04732 137 TKGWLETSEVSLEELA----KRFEELGVKAIIYTDISRDGTL-SG--------PNFELYKELAAAT-GIPVIASGGVSSL 202 (234)
T ss_pred ECCCeeecCCCHHHHH----HHHHHcCCCEEEEEeecCCCcc-CC--------CCHHHHHHHHHhc-CCCEEEecCCCCH
Confidence 2244321 2333333 3456799999999987642111 11 2388888887764 8999999999999
Q ss_pred HHHHHHHHcCcCeeEEchHHhhCCc
Q 017176 220 DEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 220 ~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
+|+.++++.|||+||+||+++.++.
T Consensus 203 ~di~~~~~~Ga~gv~vg~~~~~~~~ 227 (234)
T cd04732 203 DDIKALKELGVAGVIVGKALYEGKI 227 (234)
T ss_pred HHHHHHHHCCCCEEEEeHHHHcCCC
Confidence 9999999999999999999999985
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.5e-10 Score=104.68 Aligned_cols=129 Identities=18% Similarity=0.170 Sum_probs=91.2
Q ss_pred HHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec----CCCCCC--ccHHHHHHHH
Q 017176 85 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR----IGVDDH--DSYNQLCDFI 158 (376)
Q Consensus 85 ~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR----~g~~~~--~~~~~~~~~i 158 (376)
.+.+.|+|.|- .|++++.+++.+.++++...+.+.+++.+|.+ .||.+. .+..++
T Consensus 91 ~~~~~Ga~~vi---------------lg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~---- 151 (233)
T PRK00748 91 ALLDAGVSRVI---------------IGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDL---- 151 (233)
T ss_pred HHHHcCCCEEE---------------ECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHH----
Confidence 34446887763 36777788999999999886554444444321 355332 233343
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcC-cCeeEEch
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGR 237 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~G-ad~VmiGR 237 (376)
.+.+++.|++.|.+|.+++..... + .+++.+.++++.. ++|||++|||.|.+|+.++++.| ||+||+||
T Consensus 152 ~~~~~~~g~~~ii~~~~~~~g~~~-G--------~d~~~i~~l~~~~-~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~ 221 (233)
T PRK00748 152 AKRFEDAGVKAIIYTDISRDGTLS-G--------PNVEATRELAAAV-PIPVIASGGVSSLDDIKALKGLGAVEGVIVGR 221 (233)
T ss_pred HHHHHhcCCCEEEEeeecCcCCcC-C--------CCHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCccEEEEEH
Confidence 334567899999999887532221 1 2388888888764 79999999999999999999955 99999999
Q ss_pred HHhhC
Q 017176 238 AAYQN 242 (376)
Q Consensus 238 a~l~~ 242 (376)
+++..
T Consensus 222 a~~~~ 226 (233)
T PRK00748 222 ALYEG 226 (233)
T ss_pred HHHcC
Confidence 99865
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=99.17 E-value=7e-10 Score=102.78 Aligned_cols=144 Identities=14% Similarity=0.201 Sum_probs=97.3
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC
Q 017176 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 143 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~ 143 (376)
+.|+ |+. .++..+.++.+ +.+.|++.|.++ +.++.+|+.+.++++...+. .++++++++.
T Consensus 74 ~~pv--~~~-ggi~~~~d~~~-~~~~G~~~vilg---------------~~~l~~~~~~~~~~~~~~~~-~i~vsld~~~ 133 (232)
T TIGR03572 74 FMPL--TVG-GGIRSLEDAKK-LLSLGADKVSIN---------------TAALENPDLIEEAARRFGSQ-CVVVSIDVKK 133 (232)
T ss_pred CCCE--EEE-CCCCCHHHHHH-HHHcCCCEEEEC---------------hhHhcCHHHHHHHHHHcCCc-eEEEEEEecc
Confidence 4454 554 34444444444 445699998775 45678899999998876433 2567777766
Q ss_pred C------------CCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEE
Q 017176 144 G------------VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 211 (376)
Q Consensus 144 g------------~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi 211 (376)
+ |.+... .+..++ ++.+++.|++.|++|+.+..... ...+++.+.++++.. ++||+
T Consensus 134 ~~~~~~~~v~~~~~~~~~~-~~~~~~-~~~~~~~G~d~i~i~~i~~~g~~---------~g~~~~~~~~i~~~~-~ipvi 201 (232)
T TIGR03572 134 ELDGSDYKVYSDNGRRATG-RDPVEW-AREAEQLGAGEILLNSIDRDGTM---------KGYDLELIKTVSDAV-SIPVI 201 (232)
T ss_pred CCCCCcEEEEECCCcccCC-CCHHHH-HHHHHHcCCCEEEEeCCCccCCc---------CCCCHHHHHHHHhhC-CCCEE
Confidence 4 211111 122332 34456799999999997642111 112488888888764 89999
Q ss_pred EecCCCCHHHHHHHHH-cCcCeeEEchHH
Q 017176 212 LNGGINTVDEVNAALR-KGAHHVMVGRAA 239 (376)
Q Consensus 212 ~nGgI~s~~da~~~l~-~Gad~VmiGRa~ 239 (376)
++|||.+.+|+.+++. +|||+|++|+++
T Consensus 202 a~GGi~s~~di~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 202 ALGGAGSLDDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred EECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence 9999999999999665 999999999987
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-09 Score=101.37 Aligned_cols=128 Identities=21% Similarity=0.281 Sum_probs=92.4
Q ss_pred HHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHh-cccCccEEEEec------CCCCCCc--cHHHH
Q 017176 84 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA-ANTNVPVSVKCR------IGVDDHD--SYNQL 154 (376)
Q Consensus 84 ~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~-~~~~~pv~vKiR------~g~~~~~--~~~~~ 154 (376)
+.+.++|+|.|-+ |+.++.+++.+.+++++.. +. +.+++++| -||.+.. +..++
T Consensus 88 ~~~~~~Ga~~vvl---------------gs~~l~d~~~~~~~~~~~g~~~--i~~sid~~~~~v~~~g~~~~~~~~~~~~ 150 (230)
T TIGR00007 88 EKLLDLGVDRVII---------------GTAAVENPDLVKELLKEYGPER--IVVSLDARGGEVAVKGWLEKSEVSLEEL 150 (230)
T ss_pred HHHHHcCCCEEEE---------------ChHHhhCHHHHHHHHHHhCCCc--EEEEEEEECCEEEEcCCcccCCCCHHHH
Confidence 4455579988732 5666778999999999885 33 34555555 3455422 23333
Q ss_pred HHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeE
Q 017176 155 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM 234 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vm 234 (376)
+ +.+++.|++.+++|.++..... .+ .+++.+.++.+. +++||+++|||.+.+|+.+++++|||+||
T Consensus 151 ~----~~~~~~g~~~ii~~~~~~~g~~-~g--------~~~~~i~~i~~~-~~ipvia~GGi~~~~di~~~~~~Gadgv~ 216 (230)
T TIGR00007 151 A----KRLEELGLEGIIYTDISRDGTL-SG--------PNFELTKELVKA-VNVPVIASGGVSSIDDLIALKKLGVYGVI 216 (230)
T ss_pred H----HHHHhCCCCEEEEEeecCCCCc-CC--------CCHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHCCCCEEE
Confidence 3 3345799999999988753111 11 248888888776 58999999999999999999899999999
Q ss_pred EchHHhhC
Q 017176 235 VGRAAYQN 242 (376)
Q Consensus 235 iGRa~l~~ 242 (376)
+||+++.+
T Consensus 217 ig~a~~~~ 224 (230)
T TIGR00007 217 VGKALYEG 224 (230)
T ss_pred EeHHHHcC
Confidence 99999876
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.8e-10 Score=109.47 Aligned_cols=204 Identities=19% Similarity=0.223 Sum_probs=123.3
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhh---ccCCCC-CCEEEEecCCCHH
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFL---AFSPEQ-HPIVLQIGGSNLD 77 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~---~~~~~~-~p~~vQL~g~~~~ 77 (376)
.+++.++-|++-|||.++|+..+.......||.|.+--.+...+.. ..-++.++.. ...+.+ -.+.+-+ |..++
T Consensus 31 ~~~~~l~iPivsa~MDtVte~~mAiama~~Gglgvih~~~~~e~q~-~~v~~vK~~~~~a~~d~~~~l~V~aav-g~~~~ 108 (352)
T PF00478_consen 31 TRNITLKIPIVSAPMDTVTESEMAIAMARLGGLGVIHRNMSIEEQA-EEVKKVKRYYPNASKDEKGRLLVAAAV-GTRDD 108 (352)
T ss_dssp STSEEESSSEEE-SSTTTSSHHHHHHHHHTTSEEEEESSSCHHHHH-HHHHHHHTHHTTHHBHTTSCBCEEEEE-ESSTC
T ss_pred cCCEeecCceEecCccccchHHHHHHHHHhcCCceecCCCCHHHHH-HHHhhhccccccccccccccceEEEEe-cCCHH
Confidence 3678899999999999999999998877789888876655432211 0111111111 111222 2344444 33444
Q ss_pred HHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC-ccEEEEecCCCCCCccHHHHHH
Q 017176 78 NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCD 156 (376)
Q Consensus 78 ~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~-~pv~vKiR~g~~~~~~~~~~~~ 156 (376)
++.++.. +.++|+|.|-|... + | +.+.+.+.++.+++..+ +||.+- ++ .+.+...
T Consensus 109 ~~er~~~-L~~agvD~ivID~a--------~---g-----~s~~~~~~ik~ik~~~~~~~viaG---NV---~T~e~a~- 164 (352)
T PF00478_consen 109 DFERAEA-LVEAGVDVIVIDSA--------H---G-----HSEHVIDMIKKIKKKFPDVPVIAG---NV---VTYEGAK- 164 (352)
T ss_dssp HHHHHHH-HHHTT-SEEEEE-S--------S---T-----TSHHHHHHHHHHHHHSTTSEEEEE---EE----SHHHHH-
T ss_pred HHHHHHH-HHHcCCCEEEcccc--------C---c-----cHHHHHHHHHHHHHhCCCceEEec---cc---CCHHHHH-
Confidence 5555555 45579999977531 1 2 24667788999988774 777663 12 2332221
Q ss_pred HHHHHhhcCCccEEEEccC------ccccCCCCCCCCCCCCcccHHHHH---HHHhhCCCCeEEEecCCCCHHHHHHHHH
Q 017176 157 FIYKVSSLSPTRHFIIHSR------KALLNGISPAENRTIPPLKYEYYY---ALLRDFPDLTFTLNGGINTVDEVNAALR 227 (376)
Q Consensus 157 ~i~~~~e~~Gvd~I~vh~r------~~~~~g~~~~~~~~~~~~~~~~v~---~~~~~~~~ipVi~nGgI~s~~da~~~l~ 227 (376)
-+.++|+|.|.|--+ |+...|.+ .|. +..+. +.++++ ++|||+.|||.+.-|+.++|.
T Consensus 165 ----~L~~aGad~vkVGiGpGsiCtTr~v~GvG------~PQ--~tAv~~~a~~a~~~-~v~iIADGGi~~sGDi~KAla 231 (352)
T PF00478_consen 165 ----DLIDAGADAVKVGIGPGSICTTREVTGVG------VPQ--LTAVYECAEAARDY-GVPIIADGGIRTSGDIVKALA 231 (352)
T ss_dssp ----HHHHTT-SEEEESSSSSTTBHHHHHHSBS------CTH--HHHHHHHHHHHHCT-TSEEEEESS-SSHHHHHHHHH
T ss_pred ----HHHHcCCCEEEEeccCCcccccccccccC------CcH--HHHHHHHHHHhhhc-cCceeecCCcCcccceeeeee
Confidence 133699999998522 12222322 122 33343 344445 899999999999999999999
Q ss_pred cCcCeeEEchHHhhCCc
Q 017176 228 KGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 228 ~Gad~VmiGRa~l~~P~ 244 (376)
.|||+||+|+.|-..-.
T Consensus 232 ~GAd~VMlG~llAgt~E 248 (352)
T PF00478_consen 232 AGADAVMLGSLLAGTDE 248 (352)
T ss_dssp TT-SEEEESTTTTTBTT
T ss_pred ecccceeechhhccCcC
Confidence 99999999998876543
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-09 Score=100.48 Aligned_cols=134 Identities=19% Similarity=0.256 Sum_probs=93.6
Q ss_pred HHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhc-ccCccEEEE---ec-CCCCCCc--cHHHHHH
Q 017176 84 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-NTNVPVSVK---CR-IGVDDHD--SYNQLCD 156 (376)
Q Consensus 84 ~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~-~~~~pv~vK---iR-~g~~~~~--~~~~~~~ 156 (376)
+.+.++|+|.|-+ |+.++++|+.+.++++.+.+ .+-+.+.+| +. -||.+.. +..+++
T Consensus 92 ~~~~~~Ga~~v~i---------------Gs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~- 155 (241)
T PRK13585 92 ASLLDLGVDRVIL---------------GTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAA- 155 (241)
T ss_pred HHHHHcCCCEEEE---------------ChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHH-
Confidence 3344589998855 55667789999998888632 221122221 01 2665432 344433
Q ss_pred HHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017176 157 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 157 ~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
+.+++.|++.|++|.++.. |.. ...+++.+.++++.. ++||+++|||+|++|+.+++++||++|++|
T Consensus 156 ---~~~~~~G~~~i~~~~~~~~--g~~-------~g~~~~~i~~i~~~~-~iPvia~GGI~~~~di~~~~~~Ga~gv~vg 222 (241)
T PRK13585 156 ---KRFEELGAGSILFTNVDVE--GLL-------EGVNTEPVKELVDSV-DIPVIASGGVTTLDDLRALKEAGAAGVVVG 222 (241)
T ss_pred ---HHHHHcCCCEEEEEeecCC--CCc-------CCCCHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCCEEEEE
Confidence 3446799999999987642 110 112488888888765 899999999999999999878999999999
Q ss_pred hHHhhCCchh
Q 017176 237 RAAYQNPWYT 246 (376)
Q Consensus 237 Ra~l~~P~lf 246 (376)
++++.+|..+
T Consensus 223 sa~~~~~~~~ 232 (241)
T PRK13585 223 SALYKGKFTL 232 (241)
T ss_pred HHHhcCCcCH
Confidence 9999999875
|
|
| >KOG0538 consensus Glycolate oxidase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.6e-09 Score=98.62 Aligned_cols=207 Identities=17% Similarity=0.210 Sum_probs=132.0
Q ss_pred CeecCCcEEEccCCCC----Ch--HHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCC-CH
Q 017176 4 RQYLPPWFSVAPMMDW----TD--NHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGS-NL 76 (376)
Q Consensus 4 ~~~l~nri~lAPM~~~----td--~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~-~~ 76 (376)
|.+++-||.+||.+.. .| ..-.+.|.+.| ..++++-+.+ -..+.+....+.+ --..||+-+ |.
T Consensus 64 G~~i~~Pi~iapTa~qkma~pdGE~~taraa~~~~-~~~i~Ss~at--------~S~EdI~~aap~~-~rwfQLYvykdr 133 (363)
T KOG0538|consen 64 GQKISAPIMIAPTAMQKMAHPDGELATARAAQAAG-TIMILSSWAT--------CSVEDIASAAPPG-IRWFQLYVYKDR 133 (363)
T ss_pred cccccceeEEcchHHHhccCCcccHHHHHHHHhcC-CcEEEechhc--------CCHHHHHhhCCCC-cEEEEEEecCch
Confidence 4567779999997541 23 23333343332 3333322222 1223333333333 467899864 56
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCc----------------------------cccCCC-----CccccccCCHHHHH
Q 017176 77 DNLAKATELANAYNYDEINLNCGCPSP----------------------------KVAGHG-----CFGVSLMLDPKFVG 123 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~----------------------------~v~r~g-----~yG~~l~~~~~~~~ 123 (376)
+.-.+..++++++||.++-+....|.- ++-..+ .|+++ .-+|.+-.
T Consensus 134 ~It~~Lv~raEk~GfkAlvlTvDtP~lG~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~-~id~Sl~W 212 (363)
T KOG0538|consen 134 DITEQLVKRAEKAGFKALVLTVDTPRLGRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSS-QIDPSLSW 212 (363)
T ss_pred HHHHHHHHHHHHcCceEEEEEeccccccCchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhc-CCCCCCCh
Confidence 666778899999999999887655521 000000 12221 12566777
Q ss_pred HHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEE--ccCccccCCCCCCCCCCCCcccHHHHHHH
Q 017176 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII--HSRKALLNGISPAENRTIPPLKYEYYYAL 201 (376)
Q Consensus 124 eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~v--h~r~~~~~g~~~~~~~~~~~~~~~~v~~~ 201 (376)
+-++.+++.+..|+.+|=-+ . .++. .++.++|++.|+| ||+.+.... |...+.+.++
T Consensus 213 ~Di~wLr~~T~LPIvvKGil---t---~eDA-----~~Ave~G~~GIIVSNHGgRQlD~v----------pAtI~~L~Ev 271 (363)
T KOG0538|consen 213 KDIKWLRSITKLPIVVKGVL---T---GEDA-----RKAVEAGVAGIIVSNHGGRQLDYV----------PATIEALPEV 271 (363)
T ss_pred hhhHHHHhcCcCCeEEEeec---c---cHHH-----HHHHHhCCceEEEeCCCccccCcc----------cchHHHHHHH
Confidence 88889999999999999333 2 1222 2234799999999 565543221 2336777888
Q ss_pred HhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 202 LRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 202 ~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
++.+- +|||+..|||++..|+.++|..||.+|.+||.++.-
T Consensus 272 v~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~g 313 (363)
T KOG0538|consen 272 VKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWG 313 (363)
T ss_pred HHHhcCceEEEEecCcccchHHHHHHhcccceEEecCchhee
Confidence 77653 699999999999999999999999999999987643
|
|
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.8e-09 Score=101.46 Aligned_cols=124 Identities=15% Similarity=0.170 Sum_probs=90.2
Q ss_pred HCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHh-----cccC-------ccEEEEecCCCCCC-ccHHHH
Q 017176 88 AYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA-----ANTN-------VPVSVKCRIGVDDH-DSYNQL 154 (376)
Q Consensus 88 ~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~-----~~~~-------~pv~vKiR~g~~~~-~~~~~~ 154 (376)
+.|++.|.+ |+.++.+|+.+.++.+.+- -.++ .|++||+|.+++.. .+..+.
T Consensus 94 ~~Ga~~Vii---------------gt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 158 (253)
T PRK02083 94 RAGADKVSI---------------NSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEW 158 (253)
T ss_pred HcCCCEEEE---------------ChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHH
Confidence 368888866 3455678999999988862 1223 46799999866532 223333
Q ss_pred HHHHHHHhhcCCccEEEEcc--CccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcC
Q 017176 155 CDFIYKVSSLSPTRHFIIHS--RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAH 231 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~vh~--r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad 231 (376)
+ +.+++.|++.|++|. |....+|. +|+.+.++.+.. ++|||++|||.|.+|+.++++ +|||
T Consensus 159 ~----~~~~~~g~~~ii~~~i~~~g~~~g~-----------d~~~i~~~~~~~-~ipvia~GGv~s~~d~~~~~~~~G~~ 222 (253)
T PRK02083 159 A----KEVEELGAGEILLTSMDRDGTKNGY-----------DLELTRAVSDAV-NVPVIASGGAGNLEHFVEAFTEGGAD 222 (253)
T ss_pred H----HHHHHcCCCEEEEcCCcCCCCCCCc-----------CHHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHHhCCcc
Confidence 2 234578999999976 43222331 388888887764 899999999999999999998 7999
Q ss_pred eeEEchHHhhC
Q 017176 232 HVMVGRAAYQN 242 (376)
Q Consensus 232 ~VmiGRa~l~~ 242 (376)
+|++|+++...
T Consensus 223 gvivg~al~~~ 233 (253)
T PRK02083 223 AALAASIFHFG 233 (253)
T ss_pred EEeEhHHHHcC
Confidence 99999998754
|
|
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.08 E-value=2e-08 Score=96.07 Aligned_cols=196 Identities=16% Similarity=0.113 Sum_probs=126.2
Q ss_pred CeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhc-cCC-CCCCEEEEecCCCHHHHHH
Q 017176 4 RQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA-FSP-EQHPIVLQIGGSNLDNLAK 81 (376)
Q Consensus 4 ~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~-~~~-~~~p~~vQL~g~~~~~~~~ 81 (376)
++.+.-|++-|.|.++++.++.....++|+.+.+ =-+.+.+. ...+.+ ..+ ....+.+. .|..++++.+
T Consensus 41 ~~~~~iPii~AnMdtv~~~~mA~~la~~g~~~~i-Hk~~~~e~-------~~~~v~~~~~~~~~~~~vs-vG~~~~d~er 111 (343)
T TIGR01305 41 QTYSGVPIIAANMDTVGTFEMAAALSQHSIFTAI-HKHYSVDE-------WKAFATNSSPDCLQNVAVS-SGSSDNDLEK 111 (343)
T ss_pred ceeeCCceEecCCCcccCHHHHHHHHHCCCeEEE-eeCCCHHH-------HHHHHHhhcccccceEEEE-eccCHHHHHH
Confidence 4567789999999999999999988888866544 12122221 111221 111 12234443 3667888988
Q ss_pred HHHHHHH-CCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHH
Q 017176 82 ATELANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 160 (376)
Q Consensus 82 aa~~~~~-~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~ 160 (376)
+..+++. .+.|.|-|... +| +.+.+.+.++.+|+...-+..+|=. +- +.+...
T Consensus 112 ~~~L~~a~~~~d~iviD~A--------hG--------hs~~~i~~ik~ir~~~p~~~viaGN--V~---T~e~a~----- 165 (343)
T TIGR01305 112 MTSILEAVPQLKFICLDVA--------NG--------YSEHFVEFVKLVREAFPEHTIMAGN--VV---TGEMVE----- 165 (343)
T ss_pred HHHHHhcCCCCCEEEEECC--------CC--------cHHHHHHHHHHHHhhCCCCeEEEec--cc---CHHHHH-----
Confidence 8887765 36899877531 22 3577899999999987555555522 22 233322
Q ss_pred HhhcCCccEEEEc------cCccccCCCCCCCCCCCCcccHHHHHHHHhhC--CCCeEEEecCCCCHHHHHHHHHcCcCe
Q 017176 161 VSSLSPTRHFIIH------SRKALLNGISPAENRTIPPLKYEYYYALLRDF--PDLTFTLNGGINTVDEVNAALRKGAHH 232 (376)
Q Consensus 161 ~~e~~Gvd~I~vh------~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~--~~ipVi~nGgI~s~~da~~~l~~Gad~ 232 (376)
.+.++|+|.|.|. ..++...|.. .+ .+..+.++.+.. .++|||+.|||.+.-|+.+++..|||+
T Consensus 166 ~Li~aGAD~ikVgiGpGSicttR~~~Gvg------~p--qltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~ 237 (343)
T TIGR01305 166 ELILSGADIVKVGIGPGSVCTTRTKTGVG------YP--QLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADF 237 (343)
T ss_pred HHHHcCCCEEEEcccCCCcccCceeCCCC------cC--HHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCE
Confidence 2336999999986 2223223321 11 255565555433 279999999999999999999999999
Q ss_pred eEEchHHhhC
Q 017176 233 VMVGRAAYQN 242 (376)
Q Consensus 233 VmiGRa~l~~ 242 (376)
||+|.-+-+.
T Consensus 238 VMlG~llAG~ 247 (343)
T TIGR01305 238 VMLGGMFAGH 247 (343)
T ss_pred EEECHhhhCc
Confidence 9999544433
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.9e-09 Score=106.09 Aligned_cols=133 Identities=14% Similarity=0.133 Sum_probs=86.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQ 153 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~ 153 (376)
.++. .+-++.+.++|+|.|.|+.. + | +.....+.++.+++.. +++|.++ +..+.++
T Consensus 239 ~~~~-~~~~~~l~~ag~d~i~id~a--------~---G-----~s~~~~~~i~~ik~~~~~~~v~aG------~V~t~~~ 295 (495)
T PTZ00314 239 RPED-IERAAALIEAGVDVLVVDSS--------Q---G-----NSIYQIDMIKKLKSNYPHVDIIAG------NVVTADQ 295 (495)
T ss_pred CHHH-HHHHHHHHHCCCCEEEEecC--------C---C-----CchHHHHHHHHHHhhCCCceEEEC------CcCCHHH
Confidence 3555 45556677789999999863 1 2 2344577888888875 5677663 1123333
Q ss_pred HHHHHHHHhhcCCccEEEEc--cC-cc---ccCCCCCCCCCCCCcccHHH---HHHHHhhCCCCeEEEecCCCCHHHHHH
Q 017176 154 LCDFIYKVSSLSPTRHFIIH--SR-KA---LLNGISPAENRTIPPLKYEY---YYALLRDFPDLTFTLNGGINTVDEVNA 224 (376)
Q Consensus 154 ~~~~i~~~~e~~Gvd~I~vh--~r-~~---~~~g~~~~~~~~~~~~~~~~---v~~~~~~~~~ipVi~nGgI~s~~da~~ 224 (376)
.. .+.++|+|+|.|. ++ +. ...+.+ .|. +.. +.+..++. ++|||+.|||.++.|+.+
T Consensus 296 a~-----~~~~aGad~I~vg~g~Gs~~~t~~~~~~g------~p~--~~ai~~~~~~~~~~-~v~vIadGGi~~~~di~k 361 (495)
T PTZ00314 296 AK-----NLIDAGADGLRIGMGSGSICITQEVCAVG------RPQ--ASAVYHVARYARER-GVPCIADGGIKNSGDICK 361 (495)
T ss_pred HH-----HHHHcCCCEEEECCcCCcccccchhccCC------CCh--HHHHHHHHHHHhhc-CCeEEecCCCCCHHHHHH
Confidence 22 2347999999873 22 11 111111 122 233 33444443 799999999999999999
Q ss_pred HHHcCcCeeEEchHHhhCCc
Q 017176 225 ALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 225 ~l~~Gad~VmiGRa~l~~P~ 244 (376)
+++.|||+||+|+.+...-.
T Consensus 362 Ala~GA~~Vm~G~~~a~~~e 381 (495)
T PTZ00314 362 ALALGADCVMLGSLLAGTEE 381 (495)
T ss_pred HHHcCCCEEEECchhccccc
Confidence 99999999999999876543
|
|
| >COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-09 Score=105.61 Aligned_cols=106 Identities=21% Similarity=0.224 Sum_probs=77.9
Q ss_pred cCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEE--ccCccccCCCCCCCCCCCCcc
Q 017176 116 MLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII--HSRKALLNGISPAENRTIPPL 193 (376)
Q Consensus 116 ~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~v--h~r~~~~~g~~~~~~~~~~~~ 193 (376)
..+|....|.+..+++.+..|+.+| |+... +|.. -+-+.|+++|.+ |++.+...|.+
T Consensus 200 ~~~P~i~ked~~~i~~~~~~~lv~k---GV~~~---~D~~-----~a~~tg~~~I~vsnhggrqlD~g~s---------- 258 (360)
T COG1304 200 LSVPVISKEDGAGISKEWAGPLVLK---GILAP---EDAA-----GAGGTGADGIEVSNHGGRQLDWGIS---------- 258 (360)
T ss_pred cCCCcccHHHHhHHHHhcCCcHHHh---CCCCH---HHHH-----hhccCCceEEEEEcCCCccccCCCC----------
Confidence 3567777788888888887887776 54432 2221 123689999999 45544333322
Q ss_pred cHHHHHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 194 KYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 194 ~~~~v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
..+.+.++.+.++ +++|++.|||+++.|+.++++.|||+|++||++|..
T Consensus 259 t~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~~ 308 (360)
T COG1304 259 TADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFLYG 308 (360)
T ss_pred hHHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhCCchhhhhHHHHHH
Confidence 2677778887776 499999999999999999999999999999998653
|
|
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.4e-08 Score=93.69 Aligned_cols=193 Identities=12% Similarity=0.085 Sum_probs=124.5
Q ss_pred cCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhh-ccCCC-CCCEEEEecCCCHHHHHHHHH
Q 017176 7 LPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFL-AFSPE-QHPIVLQIGGSNLDNLAKATE 84 (376)
Q Consensus 7 l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~-~~~~~-~~p~~vQL~g~~~~~~~~aa~ 84 (376)
+.-|++-|+|.++++.++.....++|+.+.+ =-+.+.+. ...++ ..++. ...+.+.+ |..++++.++.+
T Consensus 45 ~giPii~AnMdTV~~~~mA~~la~~g~~~~i-Hk~~~~e~-------~~~fv~~~~~~~~~~~~vav-G~~~~d~er~~~ 115 (346)
T PRK05096 45 SGVPIIAANMDTVGTFEMAKALASFDILTAV-HKHYSVEE-------WAAFVNNSSADVLKHVMVST-GTSDADFEKTKQ 115 (346)
T ss_pred cCCceEecCCCccccHHHHHHHHHCCCeEEE-ecCCCHHH-------HHHHHHhccccccceEEEEe-cCCHHHHHHHHH
Confidence 4479999999999999999988888865543 11111111 11122 11211 12344433 667889999988
Q ss_pred HHHH-CCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHh
Q 017176 85 LANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVS 162 (376)
Q Consensus 85 ~~~~-~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~ 162 (376)
+++. +|.|.|-|... +| +.+.+.+.++.+|+.. +.+|.+. ++ .+.+ .++ -+
T Consensus 116 L~~~~~g~D~iviD~A--------hG--------hs~~~i~~ik~ik~~~P~~~vIaG---NV---~T~e-~a~----~L 168 (346)
T PRK05096 116 ILALSPALNFICIDVA--------NG--------YSEHFVQFVAKAREAWPDKTICAG---NV---VTGE-MVE----EL 168 (346)
T ss_pred HHhcCCCCCEEEEECC--------CC--------cHHHHHHHHHHHHHhCCCCcEEEe---cc---cCHH-HHH----HH
Confidence 8874 79999988531 22 3577899999999875 5566552 12 2222 221 23
Q ss_pred hcCCccEEEEccC------ccccCCCCCCCCCCCCcccHHHHHH---HHhhCCCCeEEEecCCCCHHHHHHHHHcCcCee
Q 017176 163 SLSPTRHFIIHSR------KALLNGISPAENRTIPPLKYEYYYA---LLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV 233 (376)
Q Consensus 163 e~~Gvd~I~vh~r------~~~~~g~~~~~~~~~~~~~~~~v~~---~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~V 233 (376)
.++|+|.|.|--+ |+...|.+- |+ +..+.+ ..++ .++|||+.|||.+.-|+.++|..|||+|
T Consensus 169 i~aGAD~vKVGIGpGSiCtTr~vtGvG~------PQ--ltAV~~~a~~a~~-~gvpiIADGGi~~sGDI~KAlaaGAd~V 239 (346)
T PRK05096 169 ILSGADIVKVGIGPGSVCTTRVKTGVGY------PQ--LSAVIECADAAHG-LGGQIVSDGGCTVPGDVAKAFGGGADFV 239 (346)
T ss_pred HHcCCCEEEEcccCCccccCccccccCh------hH--HHHHHHHHHHHHH-cCCCEEecCCcccccHHHHHHHcCCCEE
Confidence 4699999987421 222233221 22 333433 3343 3899999999999999999999999999
Q ss_pred EEchHHhhCCc
Q 017176 234 MVGRAAYQNPW 244 (376)
Q Consensus 234 miGRa~l~~P~ 244 (376)
|+|+-|-+.-.
T Consensus 240 MlGsllAGt~E 250 (346)
T PRK05096 240 MLGGMLAGHEE 250 (346)
T ss_pred EeChhhcCccc
Confidence 99998877654
|
|
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.8e-08 Score=94.03 Aligned_cols=144 Identities=20% Similarity=0.251 Sum_probs=94.9
Q ss_pred HHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHH
Q 017176 81 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 160 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~ 160 (376)
+-|++++++|+-.|------|.+ .|+.+ |-+-+++|+.+.+|-+ .+++||.-|+|.|. +.| ++
T Consensus 21 eqa~iae~aga~avm~le~~p~d--~r~~g-gv~R~~~p~~I~~I~~----~V~iPVig~~kigh-----~~E-----a~ 83 (287)
T TIGR00343 21 EQAKIAEEAGAVAVMALERVPAD--IRASG-GVARMSDPKMIKEIMD----AVSIPVMAKVRIGH-----FVE-----AQ 83 (287)
T ss_pred HHHHHHHHcCceEEEeeccCchh--hHhcC-CeeecCCHHHHHHHHH----hCCCCEEEEeeccH-----HHH-----HH
Confidence 46789999998777655456765 35555 8889999987766654 46899999999873 111 12
Q ss_pred HhhcCCccEEEEccC-----------------------------------------ccccCCCCC---------------
Q 017176 161 VSSLSPTRHFIIHSR-----------------------------------------KALLNGISP--------------- 184 (376)
Q Consensus 161 ~~e~~Gvd~I~vh~r-----------------------------------------~~~~~g~~~--------------- 184 (376)
.+++.|+|.|.-+-+ |....|+..
T Consensus 84 ~L~~~GvDiIDeTe~lrPade~~~~~K~~f~vpfmad~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~ 163 (287)
T TIGR00343 84 ILEALGVDYIDESEVLTPADWTFHIDKKKFKVPFVCGARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEI 163 (287)
T ss_pred HHHHcCCCEEEccCCCCcHHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHH
Confidence 233444444432211 000001100
Q ss_pred -------CCC-----CCCCcccHHHHHHHHhhCCCCeEE--EecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 185 -------AEN-----RTIPPLKYEYYYALLRDFPDLTFT--LNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 185 -------~~~-----~~~~~~~~~~v~~~~~~~~~ipVi--~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
.+. ..-....++.+.++++.. ++||+ +.|||.|++++..+++.|||+|++|+++...
T Consensus 164 ~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~~-~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks 234 (287)
T TIGR00343 164 RQIQNMLEEEDLAAVAKELRVPVELLLEVLKLG-KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKS 234 (287)
T ss_pred HHHhcccchhHHhhhhcccCCCHHHHHHHHHhC-CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcC
Confidence 000 000123478888888764 89998 9999999999999999999999999999853
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.1e-08 Score=99.30 Aligned_cols=132 Identities=16% Similarity=0.107 Sum_probs=81.6
Q ss_pred HHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHH
Q 017176 83 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKV 161 (376)
Q Consensus 83 a~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~ 161 (376)
++.+.++|+|.|-|.+ + + | +...+.+.++.+|+.. +.+|.++ ++ .+.++.. .
T Consensus 253 ~~~l~~ag~d~i~iD~--~------~---g-----~~~~~~~~i~~ik~~~p~~~vi~g---~v---~t~e~a~-----~ 305 (505)
T PLN02274 253 LEHLVKAGVDVVVLDS--S------Q---G-----DSIYQLEMIKYIKKTYPELDVIGG---NV---VTMYQAQ-----N 305 (505)
T ss_pred HHHHHHcCCCEEEEeC--C------C---C-----CcHHHHHHHHHHHHhCCCCcEEEe---cC---CCHHHHH-----H
Confidence 3344456777776653 1 1 1 2345667788888765 4566553 11 2344432 2
Q ss_pred hhcCCccEEEEc--cCccccC-CCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 162 SSLSPTRHFIIH--SRKALLN-GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 162 ~e~~Gvd~I~vh--~r~~~~~-g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
+.++|+|.|.|. ++..... ...+..... ...+..+.++.++. ++|||+.|||.++.|+.++|+.|||+||+|+.
T Consensus 306 a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~--~~~i~~~~~~~~~~-~vpVIadGGI~~~~di~kAla~GA~~V~vGs~ 382 (505)
T PLN02274 306 LIQAGVDGLRVGMGSGSICTTQEVCAVGRGQ--ATAVYKVASIAAQH-GVPVIADGGISNSGHIVKALTLGASTVMMGSF 382 (505)
T ss_pred HHHcCcCEEEECCCCCccccCccccccCCCc--ccHHHHHHHHHHhc-CCeEEEeCCCCCHHHHHHHHHcCCCEEEEchh
Confidence 346999999874 3321100 000000001 11245567777664 89999999999999999999999999999999
Q ss_pred HhhCCc
Q 017176 239 AYQNPW 244 (376)
Q Consensus 239 ~l~~P~ 244 (376)
+...-.
T Consensus 383 ~~~t~E 388 (505)
T PLN02274 383 LAGTTE 388 (505)
T ss_pred hccccc
Confidence 987544
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.6e-08 Score=95.04 Aligned_cols=183 Identities=11% Similarity=0.105 Sum_probs=110.4
Q ss_pred HHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCC-CCCCEEEEecC--CCHHHHHHHHHHHHHCCCCEEEecCC
Q 017176 23 HYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSP-EQHPIVLQIGG--SNLDNLAKATELANAYNYDEINLNCG 99 (376)
Q Consensus 23 ~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~-~~~p~~vQL~g--~~~~~~~~aa~~~~~~G~d~IeiN~g 99 (376)
.+.......|.-.++++........ ...+..-+..+.. .+.| +|+.| .+.++.. .+..+|++.|-+
T Consensus 34 ~~a~~~~~~G~~~l~v~Dl~~~~~~--~~~n~~~i~~i~~~~~~p--v~~~GGi~s~~d~~----~~~~~Ga~~viv--- 102 (254)
T TIGR00735 34 ELAQRYDEEGADELVFLDITASSEG--RTTMIDVVERTAETVFIP--LTVGGGIKSIEDVD----KLLRAGADKVSI--- 102 (254)
T ss_pred HHHHHHHHcCCCEEEEEcCCccccc--ChhhHHHHHHHHHhcCCC--EEEECCCCCHHHHH----HHHHcCCCEEEE---
Confidence 4444445566445666666554211 1111111111111 2333 45554 3444433 334468888755
Q ss_pred CCCccccCCCCccccccCCHHHHHHHHHHHh-ccc--Cc-----cE------EEEecCCCCCC-ccHHHHHHHHHHHhhc
Q 017176 100 CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA-ANT--NV-----PV------SVKCRIGVDDH-DSYNQLCDFIYKVSSL 164 (376)
Q Consensus 100 cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~-~~~--~~-----pv------~vKiR~g~~~~-~~~~~~~~~i~~~~e~ 164 (376)
|.+++.+|+++.++.+..- +.+ .+ ++ -||+|.+++.. .+..++ .+.+++
T Consensus 103 ------------gt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~----~~~l~~ 166 (254)
T TIGR00735 103 ------------NTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEW----AKEVEK 166 (254)
T ss_pred ------------ChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHH----HHHHHH
Confidence 4556678999999887763 222 22 21 47888755432 223232 334568
Q ss_pred CCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHhhC
Q 017176 165 SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQN 242 (376)
Q Consensus 165 ~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l~~ 242 (376)
.|++.|.+|+++.. |+. ...+++++.++++. +++|||++|||.+++|+.++++ .+||+|++|+++...
T Consensus 167 ~G~~~iivt~i~~~--g~~-------~g~~~~~~~~i~~~-~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~ 235 (254)
T TIGR00735 167 LGAGEILLTSMDKD--GTK-------SGYDLELTKAVSEA-VKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYR 235 (254)
T ss_pred cCCCEEEEeCcCcc--cCC-------CCCCHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCC
Confidence 99999999987652 211 11247888888776 4899999999999999999999 459999999997543
|
|
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.2e-07 Score=96.17 Aligned_cols=134 Identities=15% Similarity=0.181 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcc-cCccEEEEecCCCCCCccHHHH
Q 017176 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVSVKCRIGVDDHDSYNQL 154 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~-~~~pv~vKiR~g~~~~~~~~~~ 154 (376)
++.+.++. .+.++|+|.|.|+... | +...+.+.++.+++. .+.||.++-= .+.++.
T Consensus 223 ~~~~~r~~-~L~~aG~d~I~vd~a~-----------g-----~~~~~~~~i~~i~~~~~~~~vi~G~v------~t~~~a 279 (450)
T TIGR01302 223 EFDKERAE-ALVKAGVDVIVIDSSH-----------G-----HSIYVIDSIKEIKKTYPDLDIIAGNV------ATAEQA 279 (450)
T ss_pred hhHHHHHH-HHHHhCCCEEEEECCC-----------C-----cHhHHHHHHHHHHHhCCCCCEEEEeC------CCHHHH
Confidence 34455554 5566899999997532 1 224577888999887 4788888422 233332
Q ss_pred HHHHHHHhhcCCccEEEEc--cCc----cccCCCCCCCCCCCCcccHHHHHHH---HhhCCCCeEEEecCCCCHHHHHHH
Q 017176 155 CDFIYKVSSLSPTRHFIIH--SRK----ALLNGISPAENRTIPPLKYEYYYAL---LRDFPDLTFTLNGGINTVDEVNAA 225 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~vh--~r~----~~~~g~~~~~~~~~~~~~~~~v~~~---~~~~~~ipVi~nGgI~s~~da~~~ 225 (376)
. .+.++|+|+|.|. ++. +...|.+ .+. +..+.++ .++. ++|||+.|||+++.|+.++
T Consensus 280 ~-----~l~~aGad~i~vg~g~G~~~~t~~~~~~g------~p~--~~~i~~~~~~~~~~-~vpviadGGi~~~~di~kA 345 (450)
T TIGR01302 280 K-----ALIDAGADGLRVGIGPGSICTTRIVAGVG------VPQ--ITAVYDVAEYAAQS-GIPVIADGGIRYSGDIVKA 345 (450)
T ss_pred H-----HHHHhCCCEEEECCCCCcCCccceecCCC------ccH--HHHHHHHHHHHhhc-CCeEEEeCCCCCHHHHHHH
Confidence 2 2346999999864 221 1111111 111 3444444 3333 7999999999999999999
Q ss_pred HHcCcCeeEEchHHhhCCchh
Q 017176 226 LRKGAHHVMVGRAAYQNPWYT 246 (376)
Q Consensus 226 l~~Gad~VmiGRa~l~~P~lf 246 (376)
++.|||+||+|+.+....+..
T Consensus 346 la~GA~~V~~G~~~a~~~e~p 366 (450)
T TIGR01302 346 LAAGADAVMLGSLLAGTTESP 366 (450)
T ss_pred HHcCCCEEEECchhhcCCcCC
Confidence 999999999999998877654
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.8e-07 Score=84.50 Aligned_cols=201 Identities=15% Similarity=0.174 Sum_probs=121.2
Q ss_pred CCCeecCCcEEEccCCCCChHHH-HHHHHHhCCCcEEEecceeecccccccchhhhhhcc-CCCCCCEEEEecC-CCHHH
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHY-RTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF-SPEQHPIVLQIGG-SNLDN 78 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~-r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~-~~~~~p~~vQL~g-~~~~~ 78 (376)
|++.+|+.|+++- -+.+.+... +...++.| +.++..-.=..+ +. ......+++. ...+..+..|-.| .+.++
T Consensus 3 i~~~~~~SRl~~G-tgky~s~~~~~~ai~aSg-~~ivTva~rR~~-~~--~~~~~~~~~~i~~~~~~~lpNTaG~~ta~e 77 (248)
T cd04728 3 IGGKTFSSRLLLG-TGKYPSPAIMKEAIEASG-AEIVTVALRRVN-IG--DPGGESFLDLLDKSGYTLLPNTAGCRTAEE 77 (248)
T ss_pred ECCEEeecceEEe-cCCCCCHHHHHHHHHHhC-CCEEEEEEEecc-cC--CCCcchHHhhccccCCEECCCCCCCCCHHH
Confidence 7899999999985 334555554 44455554 665532222222 11 1111223322 2233334444444 46888
Q ss_pred HHHHHHHHHHC-CCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcc-c-CccEEEEecCCCCCCccHHHHH
Q 017176 79 LAKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-T-NVPVSVKCRIGVDDHDSYNQLC 155 (376)
Q Consensus 79 ~~~aa~~~~~~-G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~-~-~~pv~vKiR~g~~~~~~~~~~~ 155 (376)
-+..|+++.++ |-|+|-|- +..... .|+.|+....+-.+.+.+. . -+|+.. +| ..
T Consensus 78 Av~~a~lare~~~~~~iKlE-------Vi~d~~---~Llpd~~~tv~aa~~L~~~Gf~vlpyc~------dd---~~--- 135 (248)
T cd04728 78 AVRTARLAREALGTDWIKLE-------VIGDDK---TLLPDPIETLKAAEILVKEGFTVLPYCT------DD---PV--- 135 (248)
T ss_pred HHHHHHHHHHHhCCCeEEEE-------EecCcc---ccccCHHHHHHHHHHHHHCCCEEEEEeC------CC---HH---
Confidence 99999999886 45777663 222222 3666666655555554321 1 223322 22 22
Q ss_pred HHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEE
Q 017176 156 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 235 (376)
Q Consensus 156 ~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vmi 235 (376)
+++.+++.|++.|-.+|..-. +|. ...+.+++..+++. +++|||+.|||.+++|+.++++.|||+|++
T Consensus 136 --~ar~l~~~G~~~vmPlg~pIG-sg~--------Gi~~~~~I~~I~e~-~~vpVI~egGI~tpeda~~AmelGAdgVlV 203 (248)
T cd04728 136 --LAKRLEDAGCAAVMPLGSPIG-SGQ--------GLLNPYNLRIIIER-ADVPVIVDAGIGTPSDAAQAMELGADAVLL 203 (248)
T ss_pred --HHHHHHHcCCCEeCCCCcCCC-CCC--------CCCCHHHHHHHHHh-CCCcEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 134456789999966554321 111 12236777777776 589999999999999999999999999999
Q ss_pred chHHhh
Q 017176 236 GRAAYQ 241 (376)
Q Consensus 236 GRa~l~ 241 (376)
|+|+..
T Consensus 204 ~SAIt~ 209 (248)
T cd04728 204 NTAIAK 209 (248)
T ss_pred ChHhcC
Confidence 999974
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.2e-08 Score=89.16 Aligned_cols=144 Identities=21% Similarity=0.351 Sum_probs=103.9
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC--
Q 017176 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI-- 143 (376)
Q Consensus 66 p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~-- 143 (376)
++-+|+.|.-.+ .+.++.+.++|++.+-+ |+.-..+|+++.++++..-.. +-|.+-.|.
T Consensus 75 ~~~vQvGGGIRs--~~~v~~ll~~G~~rVii---------------Gt~av~~p~~v~~~~~~~g~r--ivv~lD~r~g~ 135 (241)
T COG0106 75 DVPVQVGGGIRS--LEDVEALLDAGVARVII---------------GTAAVKNPDLVKELCEEYGDR--IVVALDARDGK 135 (241)
T ss_pred CCCEEeeCCcCC--HHHHHHHHHCCCCEEEE---------------ecceecCHHHHHHHHHHcCCc--EEEEEEccCCc
Confidence 566899875322 23455566689877754 555578999999999987643 334444443
Q ss_pred ----CCCCCc--cHHHHHHHHHHHhhcCCccEEEEcc--CccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecC
Q 017176 144 ----GVDDHD--SYNQLCDFIYKVSSLSPTRHFIIHS--RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 215 (376)
Q Consensus 144 ----g~~~~~--~~~~~~~~i~~~~e~~Gvd~I~vh~--r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGg 215 (376)
||.+.. ++.++ .+.+++.|+..|.+|. +....+|. +++.+.++.+.+ ++|||++||
T Consensus 136 vav~GW~e~s~~~~~~l----~~~~~~~g~~~ii~TdI~~DGtl~G~-----------n~~l~~~l~~~~-~ipviaSGG 199 (241)
T COG0106 136 VAVSGWQEDSGVELEEL----AKRLEEVGLAHILYTDISRDGTLSGP-----------NVDLVKELAEAV-DIPVIASGG 199 (241)
T ss_pred cccccccccccCCHHHH----HHHHHhcCCCeEEEEecccccccCCC-----------CHHHHHHHHHHh-CcCEEEecC
Confidence 676643 34444 3445689999999985 33344442 378888888876 999999999
Q ss_pred CCCHHHHHHHHHc-CcCeeEEchHHhhCCc
Q 017176 216 INTVDEVNAALRK-GAHHVMVGRAAYQNPW 244 (376)
Q Consensus 216 I~s~~da~~~l~~-Gad~VmiGRa~l~~P~ 244 (376)
|.|.+|++.+.+. |+++|.+||+++..-.
T Consensus 200 v~s~~Di~~l~~~~G~~GvIvG~ALy~g~~ 229 (241)
T COG0106 200 VSSLDDIKALKELSGVEGVIVGRALYEGKF 229 (241)
T ss_pred cCCHHHHHHHHhcCCCcEEEEehHHhcCCC
Confidence 9999999999887 8999999999987654
|
|
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.5e-08 Score=90.86 Aligned_cols=155 Identities=16% Similarity=0.170 Sum_probs=102.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHH-----HHHHHHhcccCccEE--EEecCCCC
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG-----EAMSVIAANTNVPVS--VKCRIGVD 146 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~-----eiv~~v~~~~~~pv~--vKiR~g~~ 146 (376)
.+.+++.+.++.+++. +|.||||+-||.+. .| |..+.+....+. ++++++++.+++|+. +|+..-.
T Consensus 15 p~~~~~~~~~~~l~~~-ad~iElgip~sdp~---ad--G~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~~~- 87 (244)
T PRK13125 15 PNVESFKEFIIGLVEL-VDILELGIPPKYPK---YD--GPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLEDYV- 87 (244)
T ss_pred CCHHHHHHHHHHHHhh-CCEEEECCCCCCCC---CC--CHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecchhh-
Confidence 4789999999999887 99999999999873 12 666677777777 899999988888974 5555411
Q ss_pred CCccHHHHHHHHHHHhhcCCccEEEEcc-----------------------------Cccc---------cC-----CCC
Q 017176 147 DHDSYNQLCDFIYKVSSLSPTRHFIIHS-----------------------------RKAL---------LN-----GIS 183 (376)
Q Consensus 147 ~~~~~~~~~~~i~~~~e~~Gvd~I~vh~-----------------------------r~~~---------~~-----g~~ 183 (376)
...++.++ .+.++|+|.|++|. .|.. .. +..
T Consensus 88 --~~~~~~i~----~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~ 161 (244)
T PRK13125 88 --DSLDNFLN----MARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLR 161 (244)
T ss_pred --hCHHHHHH----HHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeC
Confidence 12222221 22356777777762 1100 00 000
Q ss_pred CCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017176 184 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 184 ~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
+-......+...+.+.++++..++.||+.-|||.+++++.++++.|||+|.+|++++.
T Consensus 162 ~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~ 219 (244)
T PRK13125 162 PATGVPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAGADGVVVGTAFIE 219 (244)
T ss_pred CCCCCCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 0000111111133555555544468999999999999999999999999999999874
|
|
| >KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.9e-09 Score=99.08 Aligned_cols=166 Identities=16% Similarity=0.212 Sum_probs=122.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHH
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQ 153 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~ 153 (376)
++...+.+.+...+++|.|..|+|+.||... ..+| .|.++-..|..+.||...|+..+.+|+.-|+.+++.+..++..
T Consensus 215 ynk~~w~el~d~~eqag~d~lE~nlscphgm-~erg-mgla~gq~p~v~~EvC~Wi~A~~~Ip~~~kmTPNitd~revar 292 (471)
T KOG1799|consen 215 YNKKCWMELNDSGEQAGQDDLETNLSCPHGM-CERG-MGLALGQCPIVDCEVCGWINAKATIPMVSKMTPNITDKREVAR 292 (471)
T ss_pred hhhhhHHHHhhhHHhhcccchhccCCCCCCC-cccc-ccceeccChhhhHHHhhhhhhccccccccccCCCcccccccch
Confidence 4567888899999999999999999999975 4345 4999999999999999999999999999999998877543322
Q ss_pred HH--------HHHHHHhhcCCccEEEEc------cCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCH
Q 017176 154 LC--------DFIYKVSSLSPTRHFIIH------SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV 219 (376)
Q Consensus 154 ~~--------~~i~~~~e~~Gvd~I~vh------~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~ 219 (376)
.. ..+..+..--|+|+=++- +++ .++|++. ..+.|..+..+..+++.....|+.+.|||.+.
T Consensus 293 ~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~s-T~GG~S~---~AvRPIAl~~V~~IA~~m~~F~l~~~GGvEt~ 368 (471)
T KOG1799|consen 293 SVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYS-TPGGYSY---KAVRPIALAKVMNIAKMMKEFSLSGIGGVETG 368 (471)
T ss_pred hcCcccccchhhHhHHHHHhcccccccCCCccccccc-CCCCccc---cccchHHHHHHHHHHHHhhcCccccccCcccc
Confidence 11 111222222233332221 221 2344443 45667767766667666657789999999999
Q ss_pred HHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 220 DEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 220 ~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
.|+.+++..|+..|++.+|.+..-+-
T Consensus 369 ~~~~~Fil~Gs~~vQVCt~V~~~~~~ 394 (471)
T KOG1799|consen 369 YDAAEFILLGSNTVQVCTGVMMHGYG 394 (471)
T ss_pred cchhhHhhcCCcHhhhhhHHHhcCcc
Confidence 99999999999999999999877753
|
|
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.2e-07 Score=85.17 Aligned_cols=51 Identities=22% Similarity=0.283 Sum_probs=44.4
Q ss_pred HHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 195 YEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 195 ~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
.+.+.++++.. .++||++.|||.+++++.++++.|||+|.+|++++..+..
T Consensus 159 ~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~~~~p 210 (217)
T cd00331 159 LNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMRAPDP 210 (217)
T ss_pred HHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcCCCCH
Confidence 56677777665 3799999999999999999999999999999999987763
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.4e-06 Score=80.11 Aligned_cols=203 Identities=16% Similarity=0.176 Sum_probs=118.8
Q ss_pred CCCeecCCcEEEccCCCCChHHH-HHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecC-CCHHHH
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHY-RTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG-SNLDNL 79 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~-r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g-~~~~~~ 79 (376)
|++.+|++|+++- -+.+.+... +...++.| +.++..-.=..+ +.........++ ...+..+..+-.| .+.++-
T Consensus 4 i~~~~~~SRl~~G-tgky~s~~~~~~ai~asg-~~ivTvalrR~~-~~~~~~~~~~~i--~~~~~~~lpNTaG~~ta~eA 78 (250)
T PRK00208 4 IAGKTFSSRLLLG-TGKYPSPQVMQEAIEASG-AEIVTVALRRVN-LGQGGDNLLDLL--PPLGVTLLPNTAGCRTAEEA 78 (250)
T ss_pred ECCEEeeccceEe-cCCCCCHHHHHHHHHHhC-CCeEEEEEEeec-CCCCcchHHhhc--cccCCEECCCCCCCCCHHHH
Confidence 6899999999985 344655555 44455554 665532222222 111112222222 2233334445444 468889
Q ss_pred HHHHHHHHHC-CCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHH
Q 017176 80 AKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 158 (376)
Q Consensus 80 ~~aa~~~~~~-G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i 158 (376)
+..|+++.++ |-++|-|- |...+. .++.|+....+-.+.+.+. ++-+.--+. ++ ...
T Consensus 79 v~~a~lare~~~~~~iKlE-------Vi~d~~---~llpd~~~tv~aa~~L~~~-Gf~vlpyc~---~d---~~~----- 136 (250)
T PRK00208 79 VRTARLAREALGTNWIKLE-------VIGDDK---TLLPDPIETLKAAEILVKE-GFVVLPYCT---DD---PVL----- 136 (250)
T ss_pred HHHHHHHHHHhCCCeEEEE-------EecCCC---CCCcCHHHHHHHHHHHHHC-CCEEEEEeC---CC---HHH-----
Confidence 9999999886 45777663 232222 2445555554444444221 222221111 22 221
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.+++.|++.|-.+|..-. +|. ...+.+.+..+++. +++|||..|||.+++|+.++++.|||+|++|+|
T Consensus 137 ak~l~~~G~~~vmPlg~pIG-sg~--------gi~~~~~i~~i~e~-~~vpVIveaGI~tpeda~~AmelGAdgVlV~SA 206 (250)
T PRK00208 137 AKRLEEAGCAAVMPLGAPIG-SGL--------GLLNPYNLRIIIEQ-ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTA 206 (250)
T ss_pred HHHHHHcCCCEeCCCCcCCC-CCC--------CCCCHHHHHHHHHh-cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChH
Confidence 34456789999966554321 111 12235667777766 589999999999999999999999999999999
Q ss_pred Hhh
Q 017176 239 AYQ 241 (376)
Q Consensus 239 ~l~ 241 (376)
+..
T Consensus 207 Itk 209 (250)
T PRK00208 207 IAV 209 (250)
T ss_pred hhC
Confidence 975
|
|
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.9e-07 Score=87.24 Aligned_cols=157 Identities=19% Similarity=0.190 Sum_probs=97.9
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCC-C-----------
Q 017176 80 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD-D----------- 147 (376)
Q Consensus 80 ~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~-~----------- 147 (376)
++-|+.++++|+-.|-.----|.. .|+-+ |-+-+++|+.+.+| ++.+++||.-+++.++- +
T Consensus 18 ~~qa~~ae~aga~~v~~~~~~~~~--~~~~~-~v~R~~~~~~I~~I----k~~V~iPVIGi~K~~~~~Ea~~L~eaGvDi 90 (283)
T cd04727 18 AEQARIAEEAGAVAVMALERVPAD--IRAAG-GVARMADPKMIKEI----MDAVSIPVMAKVRIGHFVEAQILEALGVDM 90 (283)
T ss_pred HHHHHHHHHcCceEEeeeccCchh--hhhcC-CeeecCCHHHHHHH----HHhCCCCeEEeeehhHHHHHHHHHHcCCCE
Confidence 356788999998777665455665 24444 77788888766554 55678999999887630 0
Q ss_pred ---C---ccHHHHHHHHH-----------------HHhhcCCccEEEEc--cCccc-----------------cCCCCCC
Q 017176 148 ---H---DSYNQLCDFIY-----------------KVSSLSPTRHFIIH--SRKAL-----------------LNGISPA 185 (376)
Q Consensus 148 ---~---~~~~~~~~~i~-----------------~~~e~~Gvd~I~vh--~r~~~-----------------~~g~~~~ 185 (376)
. ...+++...+. ....+.|+|.|--+ |.|.. ..|+...
T Consensus 91 IDaT~r~rP~~~~~~~iK~~~~~l~MAD~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~ 170 (283)
T cd04727 91 IDESEVLTPADEEHHIDKHKFKVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEE 170 (283)
T ss_pred EeccCCCCcHHHHHHHHHHHcCCcEEccCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 0 00111111111 11234566665432 23321 0111110
Q ss_pred CC---CCCCcccHHHHHHHHhhCCCCeEE--EecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017176 186 EN---RTIPPLKYEYYYALLRDFPDLTFT--LNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 186 ~~---~~~~~~~~~~v~~~~~~~~~ipVi--~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
.. .......|+.+.++++.. ++||| +.|||.+++++.++++.|||+|++|++++..+.
T Consensus 171 t~~~~~~~~~~d~elLk~l~~~~-~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~d 233 (283)
T cd04727 171 ELYAVAKEIQAPYELVKETAKLG-RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSEN 233 (283)
T ss_pred HHHhhhcccCCCHHHHHHHHHhc-CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCC
Confidence 00 001234588899988865 79997 999999999999999999999999999986433
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.9e-07 Score=93.41 Aligned_cols=111 Identities=14% Similarity=0.053 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHH
Q 017176 120 KFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY 198 (376)
Q Consensus 120 ~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v 198 (376)
..+.+.++.+++.. +.||.++- . .+.++.. .+.++|+|+|.|-.+.....+. ..........++.+
T Consensus 254 ~~vl~~i~~i~~~~p~~~vi~g~---v---~t~e~a~-----~l~~aGad~i~vg~g~gs~~~~--r~~~~~g~p~~~~~ 320 (486)
T PRK05567 254 EGVLDRVREIKAKYPDVQIIAGN---V---ATAEAAR-----ALIEAGADAVKVGIGPGSICTT--RIVAGVGVPQITAI 320 (486)
T ss_pred hhHHHHHHHHHhhCCCCCEEEec---c---CCHHHHH-----HHHHcCCCEEEECCCCCccccc--eeecCCCcCHHHHH
Confidence 34666777777765 67777731 1 2333322 2346999999874321100000 00000111125666
Q ss_pred HHHHhhC--CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017176 199 YALLRDF--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 199 ~~~~~~~--~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
.++.+.. .++|||+.|||+++.|+.++++.|||+||+|+.+-..-
T Consensus 321 ~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G~~~a~~~ 367 (486)
T PRK05567 321 ADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLGSMLAGTE 367 (486)
T ss_pred HHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEECccccccc
Confidence 5555432 37999999999999999999999999999999886553
|
|
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.2e-07 Score=79.77 Aligned_cols=147 Identities=16% Similarity=0.166 Sum_probs=108.1
Q ss_pred CCCEEEEecCCC----HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccE
Q 017176 64 QHPIVLQIGGSN----LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPV 137 (376)
Q Consensus 64 ~~p~~vQL~g~~----~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv 137 (376)
..|+++++..++ .++..+.++.+.++|+|+|.+.. |. +.....+.+.+.+.++++.+.+ ++|+
T Consensus 48 ~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~--~~---------~~~~~~~~~~~~~~~~~i~~~~~~~~pv 116 (201)
T cd00945 48 DVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVI--NI---------GSLKEGDWEEVLEEIAAVVEAADGGLPL 116 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEec--cH---------HHHhCCCHHHHHHHHHHHHHHhcCCceE
Confidence 578999998887 88899999999999999999852 21 1111125788888888888874 8999
Q ss_pred EEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCC
Q 017176 138 SVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGI 216 (376)
Q Consensus 138 ~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI 216 (376)
.++..++.. .+.+.+.+ +.+++++.|++.|..+.+.. .+ ..++..+.++++..+ ++||+..||+
T Consensus 117 ~iy~~p~~~--~~~~~~~~-~~~~~~~~g~~~iK~~~~~~--~~----------~~~~~~~~~i~~~~~~~~~v~~~gg~ 181 (201)
T cd00945 117 KVILETRGL--KTADEIAK-AARIAAEAGADFIKTSTGFG--GG----------GATVEDVKLMKEAVGGRVGVKAAGGI 181 (201)
T ss_pred EEEEECCCC--CCHHHHHH-HHHHHHHhCCCEEEeCCCCC--CC----------CCCHHHHHHHHHhcccCCcEEEECCC
Confidence 999988765 12333333 23445678999998875431 11 112566667766554 6899999999
Q ss_pred CCHHHHHHHHHcCcCeeEEc
Q 017176 217 NTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 217 ~s~~da~~~l~~Gad~VmiG 236 (376)
.+++.+.+++..||+++.+|
T Consensus 182 ~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 182 KTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred CCHHHHHHHHHhccceeecC
Confidence 99999999999999999876
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.2e-08 Score=92.14 Aligned_cols=80 Identities=21% Similarity=0.244 Sum_probs=66.6
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.+++.|++.|++|.+++...+. +.+++.++++.+.. ++||+++|||.|.+|++++++.|||.|++|++
T Consensus 36 a~~~~~~G~~~i~i~dl~~~~~~~---------~~~~~~i~~i~~~~-~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~ 105 (253)
T PRK02083 36 AKRYNEEGADELVFLDITASSEGR---------DTMLDVVERVAEQV-FIPLTVGGGIRSVEDARRLLRAGADKVSINSA 105 (253)
T ss_pred HHHHHHcCCCEEEEEeCCcccccC---------cchHHHHHHHHHhC-CCCEEeeCCCCCHHHHHHHHHcCCCEEEEChh
Confidence 344568999999999988632221 23488899988765 89999999999999999999999999999999
Q ss_pred HhhCCchhhH
Q 017176 239 AYQNPWYTLG 248 (376)
Q Consensus 239 ~l~~P~lf~~ 248 (376)
++.||+++.+
T Consensus 106 ~l~~p~~~~e 115 (253)
T PRK02083 106 AVANPELISE 115 (253)
T ss_pred HhhCcHHHHH
Confidence 9999998643
|
|
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.5e-07 Score=86.45 Aligned_cols=129 Identities=16% Similarity=0.140 Sum_probs=86.5
Q ss_pred HHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHH
Q 017176 82 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKV 161 (376)
Q Consensus 82 aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~ 161 (376)
-++.+.++|+|.|-++...-. ..+ + +.+.++++++++..++++.+.+. +.++.. .
T Consensus 84 ~~~~a~~aGad~I~~~~~~~~----~p~--~-------~~~~~~i~~~~~~g~~~iiv~v~-------t~~ea~-----~ 138 (219)
T cd04729 84 EVDALAAAGADIIALDATDRP----RPD--G-------ETLAELIKRIHEEYNCLLMADIS-------TLEEAL-----N 138 (219)
T ss_pred HHHHHHHcCCCEEEEeCCCCC----CCC--C-------cCHHHHHHHHHHHhCCeEEEECC-------CHHHHH-----H
Confidence 457788899999988753211 000 1 25567777776654577777432 233322 2
Q ss_pred hhcCCccEEEE--ccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHH
Q 017176 162 SSLSPTRHFII--HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 162 ~e~~Gvd~I~v--h~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~ 239 (376)
+.+.|+|+|.+ |+++...... ....++.+.++++.. ++||+++|||.+++++.++++.|||+|++|+++
T Consensus 139 a~~~G~d~i~~~~~g~t~~~~~~--------~~~~~~~l~~i~~~~-~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal 209 (219)
T cd04729 139 AAKLGFDIIGTTLSGYTEETAKT--------EDPDFELLKELRKAL-GIPVIAEGRINSPEQAAKALELGADAVVVGSAI 209 (219)
T ss_pred HHHcCCCEEEccCccccccccCC--------CCCCHHHHHHHHHhc-CCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHH
Confidence 34689999976 3443211111 112367888887765 899999999999999999999999999999997
Q ss_pred hhCCc
Q 017176 240 YQNPW 244 (376)
Q Consensus 240 l~~P~ 244 (376)
+...+
T Consensus 210 ~~~~~ 214 (219)
T cd04729 210 TRPEH 214 (219)
T ss_pred hChHh
Confidence 66555
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.8e-08 Score=87.35 Aligned_cols=146 Identities=22% Similarity=0.311 Sum_probs=95.1
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHH
Q 017176 80 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 159 (376)
Q Consensus 80 ~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~ 159 (376)
.+-|++++++|+-+|------|.+ .|+.+ |-+-|.||..+.+|+.+| .+||..|+|+|-- .| +
T Consensus 30 ~EQA~IAE~aGAvAVMaLervPaD--iR~aG-GVaRMaDp~~i~eim~aV----sIPVMAKvRIGH~-----~E-----A 92 (296)
T COG0214 30 AEQARIAEEAGAVAVMALERVPAD--IRAAG-GVARMADPKMIEEIMDAV----SIPVMAKVRIGHF-----VE-----A 92 (296)
T ss_pred HHHHHHHHhcCceeEeehhhCcHH--HHhcc-CccccCCHHHHHHHHHhc----ccceeeeeecchh-----HH-----H
Confidence 356788999998777655556765 34555 888999999999888775 5999999999721 11 4
Q ss_pred HHhhcCCccEEEEc-----------------------c-Cc------------cc--cCCCCCCCC--CCC---------
Q 017176 160 KVSSLSPTRHFIIH-----------------------S-RK------------AL--LNGISPAEN--RTI--------- 190 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh-----------------------~-r~------------~~--~~g~~~~~~--~~~--------- 190 (376)
+++|..|+|+|.=+ | |. .+ .+|..+..+ +.+
T Consensus 93 ~iLealgVD~IDESEVLTPAD~~~Hi~K~~FtVPFVcGarnLgEAlRRI~EGAaMIRTKGEaGTGnv~eAVrHmr~i~~e 172 (296)
T COG0214 93 QILEALGVDMIDESEVLTPADEEFHINKWKFTVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRKINGE 172 (296)
T ss_pred HHHHHhCCCccccccccCCCchhhhcchhhcccceecCcCcHHHHHHHHhhhHHHHhcCCCCCCCcHHHHHHHHHHHHHH
Confidence 56677888887511 1 10 00 011111000 000
Q ss_pred ----Ccc--------------cHHHHHHHHhhCCCCeE--EEecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017176 191 ----PPL--------------KYEYYYALLRDFPDLTF--TLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 191 ----~~~--------------~~~~v~~~~~~~~~ipV--i~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
... .++++.++.+. .++|| ++.|||-||.|+.-+++.|||||.+|.|++...
T Consensus 173 I~~l~~~~edel~~~Ak~~~~p~elv~~~~~~-grLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFKS~ 244 (296)
T COG0214 173 IRRLQSMTEDELYVVAKELQAPYELVKEVAKL-GRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSS 244 (296)
T ss_pred HHHHHccCHHHHHHHHHHhCChHHHHHHHHHh-CCCCeEeecccCcCChhHHHHHHHhCCCeEEecccccCCC
Confidence 000 03344444433 36887 589999999999999999999999999987543
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.4e-08 Score=90.29 Aligned_cols=80 Identities=19% Similarity=0.229 Sum_probs=65.7
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.+++.|++.|++|..+.. +.. .+.+++.+.++++.. ++||+++|||.+.+|++++++.|||+|++||+
T Consensus 33 a~~~~~~G~~~i~i~d~~~~--~~~-------~~~~~~~i~~i~~~~-~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~ 102 (243)
T cd04731 33 AKRYNEQGADELVFLDITAS--SEG-------RETMLDVVERVAEEV-FIPLTVGGGIRSLEDARRLLRAGADKVSINSA 102 (243)
T ss_pred HHHHHHCCCCEEEEEcCCcc--ccc-------CcccHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCceEEECch
Confidence 34567899999999988752 111 123578888888765 89999999999999999999999999999999
Q ss_pred HhhCCchhhH
Q 017176 239 AYQNPWYTLG 248 (376)
Q Consensus 239 ~l~~P~lf~~ 248 (376)
++.||+++.+
T Consensus 103 ~~~~p~~~~~ 112 (243)
T cd04731 103 AVENPELIRE 112 (243)
T ss_pred hhhChHHHHH
Confidence 9999998644
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.1e-07 Score=82.52 Aligned_cols=131 Identities=18% Similarity=0.168 Sum_probs=84.1
Q ss_pred HHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHH
Q 017176 82 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKV 161 (376)
Q Consensus 82 aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~ 161 (376)
-++.+.++|+|.|-+.. |... +.+ | +.+.++++.+++..++++.+.+. +.+++. .
T Consensus 80 ~v~~a~~aGad~I~~d~--~~~~--~p~--~-------~~~~~~i~~~~~~~~i~vi~~v~-------t~ee~~-----~ 134 (221)
T PRK01130 80 EVDALAAAGADIIALDA--TLRP--RPD--G-------ETLAELVKRIKEYPGQLLMADCS-------TLEEGL-----A 134 (221)
T ss_pred HHHHHHHcCCCEEEEeC--CCCC--CCC--C-------CCHHHHHHHHHhCCCCeEEEeCC-------CHHHHH-----H
Confidence 35777889999887743 2110 000 1 34567777776644667665322 233432 2
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017176 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
+.+.|+|+|.++.+.. .+... ......++.+.++++.. ++||++.|||.+++++.++++.|||+|++|++++.
T Consensus 135 a~~~G~d~i~~~~~g~--t~~~~----~~~~~~~~~i~~i~~~~-~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~ 207 (221)
T PRK01130 135 AQKLGFDFIGTTLSGY--TEETK----KPEEPDFALLKELLKAV-GCPVIAEGRINTPEQAKKALELGAHAVVVGGAITR 207 (221)
T ss_pred HHHcCCCEEEcCCcee--ecCCC----CCCCcCHHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcC
Confidence 4578999998753211 01000 01122367778887765 89999999999999999999999999999998754
Q ss_pred CCch
Q 017176 242 NPWY 245 (376)
Q Consensus 242 ~P~l 245 (376)
|..
T Consensus 208 -~~~ 210 (221)
T PRK01130 208 -PEE 210 (221)
T ss_pred -CHH
Confidence 544
|
|
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.4e-06 Score=80.60 Aligned_cols=156 Identities=17% Similarity=0.146 Sum_probs=97.4
Q ss_pred CCCCEEEEecCCCH--------HHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC
Q 017176 63 EQHPIVLQIGGSNL--------DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN 134 (376)
Q Consensus 63 ~~~p~~vQL~g~~~--------~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~ 134 (376)
...+++..+-..+| .+..+.|+..+++|+++|-++. ....||++ .+.++++++.++
T Consensus 48 ~~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvlt--------e~~~f~g~--------~~~l~~v~~~v~ 111 (260)
T PRK00278 48 GKPAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLT--------DERFFQGS--------LEYLRAARAAVS 111 (260)
T ss_pred CCCeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEec--------ccccCCCC--------HHHHHHHHHhcC
Confidence 34567777754333 2457778888889999996642 23345655 356677777788
Q ss_pred ccEEEEecC------------CCC---------CCccHHHHHHHHH----------------HHhhcCCccEEEEccCcc
Q 017176 135 VPVSVKCRI------------GVD---------DHDSYNQLCDFIY----------------KVSSLSPTRHFIIHSRKA 177 (376)
Q Consensus 135 ~pv~vKiR~------------g~~---------~~~~~~~~~~~i~----------------~~~e~~Gvd~I~vh~r~~ 177 (376)
+||..|--+ |-| +..++.++++... ..+.+.|+|.|-+|+|+.
T Consensus 112 iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin~rdl 191 (260)
T PRK00278 112 LPVLRKDFIIDPYQIYEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGINNRNL 191 (260)
T ss_pred CCEEeeeecCCHHHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCc
Confidence 999876322 100 0011222221100 012234555555554432
Q ss_pred ccCCCCCCCCCCCCcccHHHHHHHHhhCCC-CeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 178 LLNGISPAENRTIPPLKYEYYYALLRDFPD-LTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 178 ~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~-ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
. ......+.+.++.+..++ +|+|+-|||.+++++.++++.|+|+|.+|++++..+..
T Consensus 192 ~-----------~~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~~dp 249 (260)
T PRK00278 192 K-----------TFEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRADDP 249 (260)
T ss_pred c-----------cccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCCCCH
Confidence 1 111225566677766654 69999999999999999999999999999999988774
|
|
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.8e-07 Score=86.50 Aligned_cols=80 Identities=19% Similarity=0.340 Sum_probs=65.6
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.+++.|+|.++|+..+....+. +.+++.+.++.+.. ++||+++|||+++++++++++.|||.|++|++
T Consensus 35 a~~~~~~g~d~l~v~dl~~~~~~~---------~~~~~~i~~i~~~~-~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~ 104 (234)
T cd04732 35 AKKWEEAGAKWLHVVDLDGAKGGE---------PVNLELIEEIVKAV-GIPVQVGGGIRSLEDIERLLDLGVSRVIIGTA 104 (234)
T ss_pred HHHHHHcCCCEEEEECCCccccCC---------CCCHHHHHHHHHhc-CCCEEEeCCcCCHHHHHHHHHcCCCEEEECch
Confidence 445567999999999876543221 12377888888765 89999999999999999999999999999999
Q ss_pred HhhCCchhhH
Q 017176 239 AYQNPWYTLG 248 (376)
Q Consensus 239 ~l~~P~lf~~ 248 (376)
++.||+++.+
T Consensus 105 ~l~dp~~~~~ 114 (234)
T cd04732 105 AVKNPELVKE 114 (234)
T ss_pred HHhChHHHHH
Confidence 9999998643
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=98.58 E-value=1.4e-06 Score=76.95 Aligned_cols=129 Identities=21% Similarity=0.242 Sum_probs=82.0
Q ss_pred HHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHH
Q 017176 82 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKV 161 (376)
Q Consensus 82 aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~ 161 (376)
-++.+.++|+|.|-+.+ + .. .||+-+.++++++++.. ..+.. |..+++|...
T Consensus 56 ev~~l~~aGadIIAlDa-------T--~R------~Rp~~l~~li~~i~~~~-~l~MA-------Dist~ee~~~----- 107 (192)
T PF04131_consen 56 EVDALAEAGADIIALDA-------T--DR------PRPETLEELIREIKEKY-QLVMA-------DISTLEEAIN----- 107 (192)
T ss_dssp HHHHHHHCT-SEEEEE--------S--SS------S-SS-HHHHHHHHHHCT-SEEEE-------E-SSHHHHHH-----
T ss_pred HHHHHHHcCCCEEEEec-------C--CC------CCCcCHHHHHHHHHHhC-cEEee-------ecCCHHHHHH-----
Confidence 34456678999998864 1 11 35567889999999876 55544 3345666533
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017176 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
+.++|+|.|--. + .|+.+.. .. ...+++++.++++. ++|||+-|+|++++++.++++.||++|.+|.+. .
T Consensus 108 A~~~G~D~I~TT----L-sGYT~~t-~~-~~pD~~lv~~l~~~--~~pvIaEGri~tpe~a~~al~~GA~aVVVGsAI-T 177 (192)
T PF04131_consen 108 AAELGFDIIGTT----L-SGYTPYT-KG-DGPDFELVRELVQA--DVPVIAEGRIHTPEQAAKALELGAHAVVVGSAI-T 177 (192)
T ss_dssp HHHTT-SEEE-T----T-TTSSTTS-TT-SSHHHHHHHHHHHT--TSEEEEESS--SHHHHHHHHHTT-SEEEE-HHH-H
T ss_pred HHHcCCCEEEcc----c-ccCCCCC-CC-CCCCHHHHHHHHhC--CCcEeecCCCCCHHHHHHHHhcCCeEEEECccc-C
Confidence 357999987532 1 2222111 11 33468999998875 899999999999999999999999999999875 6
Q ss_pred CCchhhH
Q 017176 242 NPWYTLG 248 (376)
Q Consensus 242 ~P~lf~~ 248 (376)
+|++..+
T Consensus 178 rP~~It~ 184 (192)
T PF04131_consen 178 RPQEITK 184 (192)
T ss_dssp -HHHHHH
T ss_pred CHHHHHH
Confidence 7776543
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.1e-06 Score=82.07 Aligned_cols=135 Identities=10% Similarity=0.079 Sum_probs=102.0
Q ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEE
Q 017176 62 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVK 140 (376)
Q Consensus 62 ~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vK 140 (376)
....|+..|+++.+++.+.+.++.+.+.||+.|.||+|. +++...++++++++.+ +.++.++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~iKik~g~-----------------~~~~d~~~v~~lr~~~g~~~l~vD 183 (316)
T cd03319 121 PRPLETDYTISIDTPEAMAAAAKKAAKRGFPLLKIKLGG-----------------DLEDDIERIRAIREAAPDARLRVD 183 (316)
T ss_pred CCCceeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCC-----------------ChhhHHHHHHHHHHhCCCCeEEEe
Confidence 355677789988899999999998888999999998652 2344567788888766 4788888
Q ss_pred ecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHH
Q 017176 141 CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVD 220 (376)
Q Consensus 141 iR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~ 220 (376)
.+.+|+. ++..++ .+.+++.|+.+|. . .+++.+++.++++.+. .++||++++.+.+.+
T Consensus 184 ~n~~~~~----~~A~~~-~~~l~~~~l~~iE----e------------P~~~~d~~~~~~L~~~-~~ipIa~~E~~~~~~ 241 (316)
T cd03319 184 ANQGWTP----EEAVEL-LRELAELGVELIE----Q------------PVPAGDDDGLAYLRDK-SPLPIMADESCFSAA 241 (316)
T ss_pred CCCCcCH----HHHHHH-HHHHHhcCCCEEE----C------------CCCCCCHHHHHHHHhc-CCCCEEEeCCCCCHH
Confidence 8888875 233443 3455678888873 1 1122236777777765 489999999999999
Q ss_pred HHHHHHH-cCcCeeEE
Q 017176 221 EVNAALR-KGAHHVMV 235 (376)
Q Consensus 221 da~~~l~-~Gad~Vmi 235 (376)
++.++++ .++|.|++
T Consensus 242 ~~~~~~~~~~~d~v~~ 257 (316)
T cd03319 242 DAARLAGGGAYDGINI 257 (316)
T ss_pred HHHHHHhcCCCCEEEE
Confidence 9999999 78999987
|
The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.3e-06 Score=85.98 Aligned_cols=143 Identities=15% Similarity=0.128 Sum_probs=86.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 154 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~ 154 (376)
++....+.++.+.++|+|.|-+|.-. +...|.+. -.+|..+.+++++ .++||.++ +. .+.++.
T Consensus 140 ~~~~~~e~a~~l~eAGad~I~ihgrt------~~q~~~sg-~~~p~~l~~~i~~----~~IPVI~G---~V---~t~e~A 202 (369)
T TIGR01304 140 SPQNAREIAPIVVKAGADLLVIQGTL------VSAEHVST-SGEPLNLKEFIGE----LDVPVIAG---GV---NDYTTA 202 (369)
T ss_pred CCcCHHHHHHHHHHCCCCEEEEeccc------hhhhccCC-CCCHHHHHHHHHH----CCCCEEEe---CC---CCHHHH
Confidence 34567788888899999999998421 12223111 1256655555554 46898762 22 233332
Q ss_pred HHHHHHHhhcCCccEEEEc-cCccccCCCCCCCCCCCCcccHHHHHHHH-------hhCC--CCeEEEecCCCCHHHHHH
Q 017176 155 CDFIYKVSSLSPTRHFIIH-SRKALLNGISPAENRTIPPLKYEYYYALL-------RDFP--DLTFTLNGGINTVDEVNA 224 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~vh-~r~~~~~g~~~~~~~~~~~~~~~~v~~~~-------~~~~--~ipVi~nGgI~s~~da~~ 224 (376)
. +++ ++|+|.|.+. ++........+ ..++. ...+.++. ++.. .+|||+.|||.+..|+.+
T Consensus 203 ~----~~~-~aGaDgV~~G~gg~~~~~~~lg---~~~p~--~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~k 272 (369)
T TIGR01304 203 L----HLM-RTGAAGVIVGPGGANTTRLVLG---IEVPM--ATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVK 272 (369)
T ss_pred H----HHH-HcCCCEEEECCCCCcccccccC---CCCCH--HHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHH
Confidence 2 233 4899998842 22111111000 01121 23333332 1221 399999999999999999
Q ss_pred HHHcCcCeeEEchHHhhCCc
Q 017176 225 ALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 225 ~l~~Gad~VmiGRa~l~~P~ 244 (376)
++..|||+||+|+.++.--+
T Consensus 273 AlAlGAdaV~iGt~~a~a~E 292 (369)
T TIGR01304 273 AIACGADAVVLGSPLARAAE 292 (369)
T ss_pred HHHcCCCEeeeHHHHHhhhc
Confidence 99999999999999987544
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.8e-07 Score=80.93 Aligned_cols=147 Identities=18% Similarity=0.234 Sum_probs=89.5
Q ss_pred HHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHH
Q 017176 81 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 160 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~ 160 (376)
+-|++++++|+-.+-.----|.+ .|..+ |-+-|.||+.+.||- .++.+||..|.|+|-- .| ++
T Consensus 32 eQA~iAE~aGACaVmalervPad--iR~~G-gV~RMsDP~mIKei~----~aVsiPVMAk~RiGHF-----VE-----AQ 94 (296)
T KOG1606|consen 32 EQARIAEEAGACAVMALERVPAD--IRAQG-GVARMSDPRMIKEIK----NAVSIPVMAKVRIGHF-----VE-----AQ 94 (296)
T ss_pred HHHHHHHhcCcceEeeeccCCHh--HHhcC-CeeecCCHHHHHHHH----Hhccchhhhhhhhhhh-----hH-----HH
Confidence 46788899997666554445654 34444 778899998776664 4567999999999721 11 34
Q ss_pred HhhcCCccEEEEc------------------------cCc------------cc--cCCCCCCCC--CCC----------
Q 017176 161 VSSLSPTRHFIIH------------------------SRK------------AL--LNGISPAEN--RTI---------- 190 (376)
Q Consensus 161 ~~e~~Gvd~I~vh------------------------~r~------------~~--~~g~~~~~~--~~~---------- 190 (376)
++|..|+|+|.=+ +|. ++ .+|..+..+ +.+
T Consensus 95 IlE~l~vDYiDESEvlt~AD~~hhI~KhnFkvPFvCG~rdlGEALRRI~EGAAMIRtkGeagTG~v~EaVkhvr~i~gei 174 (296)
T KOG1606|consen 95 ILEALGVDYIDESEVLTPADWDHHIEKHNFKVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGDVSEAVKHVRSINGEI 174 (296)
T ss_pred HHHHhccCccchhhhcccccccchhhhhcCcCceeeccccHHHHHHHHhhchhhheeccccCCCcHHHHHHHHHHHHHHH
Confidence 4555666665310 000 00 001100000 000
Q ss_pred ---Ccc--------------cHHHHHHHHhhCCCCeE--EEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 191 ---PPL--------------KYEYYYALLRDFPDLTF--TLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 191 ---~~~--------------~~~~v~~~~~~~~~ipV--i~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
... .++++.+.++ ...+|| ++.|||.||.|+.-+++.|||||.+|.|.+..++=
T Consensus 175 r~~~~m~~dev~t~Ak~i~aP~dLv~~t~q-~GrlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFks~dP 247 (296)
T KOG1606|consen 175 RVLKNMDDDEVFTFAKEIAAPYDLVKQTKQ-LGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDP 247 (296)
T ss_pred HHHHcCCHHHHHHHHHHhcCcHHHHHHHHH-cCCCceEEecccCcCChhHHHHHHHcCCCeEEeccccccCCCH
Confidence 000 0333444333 346888 58999999999999999999999999999877663
|
|
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.9e-06 Score=78.48 Aligned_cols=142 Identities=15% Similarity=0.163 Sum_probs=98.3
Q ss_pred CCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccC----CHHHHHHHHHHH-hcccCccEEE
Q 017176 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLML----DPKFVGEAMSVI-AANTNVPVSV 139 (376)
Q Consensus 65 ~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~----~~~~~~eiv~~v-~~~~~~pv~v 139 (376)
.++-+|+.|.-. . +.++.+-++|++-|-|| +...+ +|+++.++++.. .+.+-+-+.+
T Consensus 82 ~~~~vqvGGGIR--~-e~i~~~l~~Ga~rViig---------------T~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~ 143 (262)
T PLN02446 82 YPGGLQVGGGVN--S-ENAMSYLDAGASHVIVT---------------SYVFRDGQIDLERLKDLVRLVGKQRLVLDLSC 143 (262)
T ss_pred CCCCEEEeCCcc--H-HHHHHHHHcCCCEEEEc---------------hHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence 347789988764 3 67777888999988775 22233 499999999988 4443333333
Q ss_pred Ee--------cCCCCCCc--cHHHHHHHHHHHhhcCCccEEEEcc--CccccCCCCCCCCCCCCcccHHHHHHHHhhCCC
Q 017176 140 KC--------RIGVDDHD--SYNQLCDFIYKVSSLSPTRHFIIHS--RKALLNGISPAENRTIPPLKYEYYYALLRDFPD 207 (376)
Q Consensus 140 Ki--------R~g~~~~~--~~~~~~~~i~~~~e~~Gvd~I~vh~--r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ 207 (376)
|. .-||.+.. +..++ +.+. .+.|+..|.++. |..+..|. +++.+.++.+. ++
T Consensus 144 k~~~g~~~Va~~GW~~~t~~~~~e~---~~~~-~~~g~~eii~TdI~rDGtl~G~-----------d~el~~~l~~~-~~ 207 (262)
T PLN02446 144 RKKDGRYYVVTDRWQKFSDLAVDEE---TLEF-LAAYCDEFLVHGVDVEGKRLGI-----------DEELVALLGEH-SP 207 (262)
T ss_pred EecCCCEEEEECCCcccCCCCHHHH---HHHH-HHhCCCEEEEEEEcCCCcccCC-----------CHHHHHHHHhh-CC
Confidence 31 11565532 23333 2333 357899999874 44444442 27788888776 59
Q ss_pred CeEEEecCCCCHHHHHHHHHc--CcCeeEEchHHh
Q 017176 208 LTFTLNGGINTVDEVNAALRK--GAHHVMVGRAAY 240 (376)
Q Consensus 208 ipVi~nGgI~s~~da~~~l~~--Gad~VmiGRa~l 240 (376)
+|||++|||.+.+|+.++.+. |+.+|.+|++++
T Consensus 208 ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl~ 242 (262)
T PLN02446 208 IPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSALD 242 (262)
T ss_pred CCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeHH
Confidence 999999999999999999884 689999999984
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.3e-07 Score=84.74 Aligned_cols=81 Identities=20% Similarity=0.265 Sum_probs=65.7
Q ss_pred HHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHH
Q 017176 160 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~ 239 (376)
+.+++.|++.|+++..+....+ ...+++.++++++.. ++||++.|||+|.+|+++++..||+.|++||++
T Consensus 37 ~~~~~~G~~~l~v~Dl~~~~~~---------~~~n~~~i~~i~~~~-~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~ 106 (254)
T TIGR00735 37 QRYDEEGADELVFLDITASSEG---------RTTMIDVVERTAETV-FIPLTVGGGIKSIEDVDKLLRAGADKVSINTAA 106 (254)
T ss_pred HHHHHcCCCEEEEEcCCccccc---------ChhhHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhH
Confidence 3456799999999987643111 123478888888765 899999999999999999999999999999999
Q ss_pred hhCCchhhHhhh
Q 017176 240 YQNPWYTLGHVD 251 (376)
Q Consensus 240 l~~P~lf~~~~~ 251 (376)
+.||+++ +++.
T Consensus 107 ~~~p~~~-~~~~ 117 (254)
T TIGR00735 107 VKNPELI-YELA 117 (254)
T ss_pred hhChHHH-HHHH
Confidence 9999986 4443
|
|
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.46 E-value=2e-06 Score=84.82 Aligned_cols=145 Identities=15% Similarity=0.127 Sum_probs=86.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 154 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~ 154 (376)
++..+.+-++.+.++|+|.|.+|..... ..|++.- .++..+.++++. .++||.++ +. .+.+..
T Consensus 139 ~~~~~~e~a~~l~eaGvd~I~vhgrt~~------~~h~~~~-~~~~~i~~~ik~----~~ipVIaG---~V---~t~e~A 201 (368)
T PRK08649 139 SPQRAQELAPTVVEAGVDLFVIQGTVVS------AEHVSKE-GEPLNLKEFIYE----LDVPVIVG---GC---VTYTTA 201 (368)
T ss_pred CCcCHHHHHHHHHHCCCCEEEEeccchh------hhccCCc-CCHHHHHHHHHH----CCCCEEEe---CC---CCHHHH
Confidence 4455677888888999999999864221 1122110 145555555554 46888762 12 233332
Q ss_pred HHHHHHHhhcCCccEEEEccCccccCCCCCC--CCCCCCcccHHHHHHHHh---hC------CCCeEEEecCCCCHHHHH
Q 017176 155 CDFIYKVSSLSPTRHFIIHSRKALLNGISPA--ENRTIPPLKYEYYYALLR---DF------PDLTFTLNGGINTVDEVN 223 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~--~~~~~~~~~~~~v~~~~~---~~------~~ipVi~nGgI~s~~da~ 223 (376)
.+++ ++|+|.|.+ |+.... +.... ..-.++. ...+.+..+ ++ .++|||+.|||.+..|+.
T Consensus 202 ----~~l~-~aGAD~V~V-G~G~Gs-~~~t~~~~g~g~p~--~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~dia 272 (368)
T PRK08649 202 ----LHLM-RTGAAGVLV-GIGPGA-ACTSRGVLGIGVPM--ATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIA 272 (368)
T ss_pred ----HHHH-HcCCCEEEE-CCCCCc-CCCCcccCCCCcCH--HHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHH
Confidence 2223 599999988 332210 11000 0001121 333433321 11 159999999999999999
Q ss_pred HHHHcCcCeeEEchHHhhCCch
Q 017176 224 AALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 224 ~~l~~Gad~VmiGRa~l~~P~l 245 (376)
+++..|||+||+|+.++....-
T Consensus 273 kAlalGAd~Vm~Gs~fa~t~Es 294 (368)
T PRK08649 273 KAIACGADAVMLGSPLARAAEA 294 (368)
T ss_pred HHHHcCCCeecccchhcccccC
Confidence 9999999999999999886543
|
|
| >PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences | Back alignment and domain information |
|---|
Probab=98.42 E-value=9.6e-05 Score=67.37 Aligned_cols=205 Identities=15% Similarity=0.161 Sum_probs=113.2
Q ss_pred CCCeecCCcEEEccCCCCChHHH-HHHHHHhCCCcEEEecceeecccccccchhhhhhcc-CCCCCCEEEEecC-CCHHH
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHY-RTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF-SPEQHPIVLQIGG-SNLDN 78 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~-r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~-~~~~~p~~vQL~g-~~~~~ 78 (376)
|++.+|++|+++- -+.+.+... +....+.| +.++.. .+.-..... ......+++. ...+..+..+-.| .+.++
T Consensus 2 i~g~~f~SRL~lG-Tgky~s~~~m~~ai~aSg-~evvTv-alRR~~~~~-~~~~~~~~~~i~~~~~~lLPNTaGc~tA~E 77 (247)
T PF05690_consen 2 IGGKEFRSRLILG-TGKYPSPEVMREAIEASG-AEVVTV-ALRRVNLGS-KPGGDNILDYIDRSGYTLLPNTAGCRTAEE 77 (247)
T ss_dssp ETTEEES-SEEEE--STSSSHHHHHHHHHHTT--SEEEE-ECCGSTTTS--TTCHHCCCCTTCCTSEEEEE-TT-SSHHH
T ss_pred cCCEEeecceEEe-cCCCCCHHHHHHHHHHhC-CcEEEE-EEecccCCC-CCCCccHHHHhcccCCEECCcCCCCCCHHH
Confidence 6889999999985 344655554 44455554 655432 222111111 0112334433 3355667777766 47889
Q ss_pred HHHHHHHHHHC-CCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHH
Q 017176 79 LAKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDF 157 (376)
Q Consensus 79 ~~~aa~~~~~~-G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~ 157 (376)
-+..|+++.++ |-++|-|- |...+ -.|+-|+-...+-.+.+.+. ++-|.--+. +| .+
T Consensus 78 Av~~A~laRe~~~t~wIKLE-------Vi~D~---~~L~PD~~etl~Aae~Lv~e-GF~VlPY~~---~D------~v-- 135 (247)
T PF05690_consen 78 AVRTARLAREAFGTNWIKLE-------VIGDD---KTLLPDPIETLKAAEILVKE-GFVVLPYCT---DD------PV-- 135 (247)
T ss_dssp HHHHHHHHHHTTS-SEEEE---------BS-T---TT--B-HHHHHHHHHHHHHT-T-EEEEEE----S-------HH--
T ss_pred HHHHHHHHHHHcCCCeEEEE-------EeCCC---CCcCCChhHHHHHHHHHHHC-CCEEeecCC---CC------HH--
Confidence 99999999986 56787763 33222 23566665555544444432 444443322 11 11
Q ss_pred HHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEch
Q 017176 158 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGR 237 (376)
+++.+++.||..|-.-|--- =+|. ...+...++.++++. ++|||..+||-++.|+..+++.|||+|++.+
T Consensus 136 ~akrL~d~GcaavMPlgsPI-GSg~--------Gi~n~~~l~~i~~~~-~vPvIvDAGiG~pSdaa~AMElG~daVLvNT 205 (247)
T PF05690_consen 136 LAKRLEDAGCAAVMPLGSPI-GSGR--------GIQNPYNLRIIIERA-DVPVIVDAGIGTPSDAAQAMELGADAVLVNT 205 (247)
T ss_dssp HHHHHHHTT-SEBEEBSSST-TT-----------SSTHHHHHHHHHHG-SSSBEEES---SHHHHHHHHHTT-SEEEESH
T ss_pred HHHHHHHCCCCEEEeccccc-ccCc--------CCCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHcCCceeehhh
Confidence 35667899999877644211 0111 112245667777776 9999999999999999999999999999999
Q ss_pred HHhhC
Q 017176 238 AAYQN 242 (376)
Q Consensus 238 a~l~~ 242 (376)
+.-.-
T Consensus 206 AiA~A 210 (247)
T PF05690_consen 206 AIAKA 210 (247)
T ss_dssp HHHTS
T ss_pred HHhcc
Confidence 87643
|
ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C. |
| >PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots [] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.1e-06 Score=86.20 Aligned_cols=115 Identities=19% Similarity=0.245 Sum_probs=68.9
Q ss_pred CCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCC---CCCCCCc
Q 017176 117 LDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA---ENRTIPP 192 (376)
Q Consensus 117 ~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~---~~~~~~~ 192 (376)
.+++-+.+.|+.+|+.. +.||+||+-.+.. .+.+ +....++|+|.|+|.|..... |.++. +.--+|.
T Consensus 185 ~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~----~~~~----~~~~~~ag~D~ItIDG~~GGT-GAap~~~~d~~GlP~ 255 (368)
T PF01645_consen 185 YSIEDLAQLIEELRELNPGKPVGVKLVAGRG----VEDI----AAGAAKAGADFITIDGAEGGT-GAAPLTSMDHVGLPT 255 (368)
T ss_dssp SSHHHHHHHHHHHHHH-TTSEEEEEEE-STT----HHHH----HHHHHHTT-SEEEEE-TT----SSEECCHHHHC---H
T ss_pred CCHHHHHHHHHHHHhhCCCCcEEEEECCCCc----HHHH----HHhhhhccCCEEEEeCCCCCC-CCCchhHHhhCCCcH
Confidence 56788999999999988 8999999987532 2222 122347999999998765321 11110 0000110
Q ss_pred ccHHHHHH---H-HhhC--CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 193 LKYEYYYA---L-LRDF--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 193 ~~~~~v~~---~-~~~~--~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
...+.+ . .+.- -++.+|+.||+.|+.|+.+++..|||+|.+||++|--
T Consensus 256 --~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~~liA 309 (368)
T PF01645_consen 256 --EYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALGADAVYIGTAALIA 309 (368)
T ss_dssp --HHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SHHHHHH
T ss_pred --HHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEecchhhhh
Confidence 111222 1 2111 2589999999999999999999999999999999854
|
This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A. |
| >CHL00162 thiG thiamin biosynthesis protein G; Validated | Back alignment and domain information |
|---|
Probab=98.37 E-value=9.1e-05 Score=68.26 Aligned_cols=207 Identities=11% Similarity=0.067 Sum_probs=118.8
Q ss_pred CCCeecCCcEEEccCCCCChHHH-HHHHHHhCCCcEEEecceeecccccccchhhhhhcc-CCCCCCEEEEecC-CCHHH
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHY-RTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF-SPEQHPIVLQIGG-SNLDN 78 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~-r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~-~~~~~p~~vQL~g-~~~~~ 78 (376)
|++.++.+|+++- -+.+.+... ....++.| +.++..-.=..+ + ........+++. ...+..+..+-.| .+.++
T Consensus 10 i~g~~f~SRL~lG-Tgky~s~~~~~~ai~aSg-~evvTvalRR~~-~-~~~~~~~~~l~~i~~~~~~~LPNTaGc~tA~E 85 (267)
T CHL00162 10 IGNKSFNSRLMLG-TGKYKSLKDAIQSIEASG-CEIVTVAIRRLN-N-NLLNDNSNLLNGLDWNKLWLLPNTAGCQTAEE 85 (267)
T ss_pred ECCEEeecceEEe-cCCCCCHHHHHHHHHHhC-CcEEEEEEEEec-c-CcCCCcchHHHhhchhccEECCcCcCCCCHHH
Confidence 6788999999885 334655554 44455554 665432222222 1 100111222222 2233334444444 46788
Q ss_pred HHHHHHHHHHCC-------CCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccH
Q 017176 79 LAKATELANAYN-------YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSY 151 (376)
Q Consensus 79 ~~~aa~~~~~~G-------~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~ 151 (376)
-+..|+++.+++ -++|-|- |.... -.|+-|+-...+-.+.+.+. ++-|..-+. +|
T Consensus 86 Av~~A~laRe~~~~~~~~~~~wIKLE-------Vi~D~---~~LlPD~~etl~Aae~Lv~e-GF~VlPY~~---~D---- 147 (267)
T CHL00162 86 AIRMAFLGRELAKQLGQEDNNFVKLE-------VISDP---KYLLPDPIGTLKAAEFLVKK-GFTVLPYIN---AD---- 147 (267)
T ss_pred HHHHHHHHHHHhccccccCCCeEEEE-------EeCCC---cccCCChHHHHHHHHHHHHC-CCEEeecCC---CC----
Confidence 899999998864 5666553 22222 24666666555555544332 343333211 11
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcC
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH 231 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad 231 (376)
. .+++.+++.||.+|-.-|-- .=+|.+ ..+...++.++++ +++|||..+||.+++|+..+++.|||
T Consensus 148 --~--v~a~rLed~Gc~aVMPlgsP-IGSg~G--------l~n~~~l~~i~e~-~~vpVivdAGIgt~sDa~~AmElGaD 213 (267)
T CHL00162 148 --P--MLAKHLEDIGCATVMPLGSP-IGSGQG--------LQNLLNLQIIIEN-AKIPVIIDAGIGTPSEASQAMELGAS 213 (267)
T ss_pred --H--HHHHHHHHcCCeEEeeccCc-ccCCCC--------CCCHHHHHHHHHc-CCCcEEEeCCcCCHHHHHHHHHcCCC
Confidence 1 13566789999987654321 101111 1123445555554 58999999999999999999999999
Q ss_pred eeEEchHHhhCCc
Q 017176 232 HVMVGRAAYQNPW 244 (376)
Q Consensus 232 ~VmiGRa~l~~P~ 244 (376)
+|.+.+|...-++
T Consensus 214 gVL~nSaIakA~d 226 (267)
T CHL00162 214 GVLLNTAVAQAKN 226 (267)
T ss_pred EEeecceeecCCC
Confidence 9999999874433
|
|
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.6e-06 Score=84.89 Aligned_cols=134 Identities=13% Similarity=0.093 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHH
Q 017176 77 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 156 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~ 156 (376)
++..+-++.+.++|+|.|+|.. . ++ ..+.+.+.++.+++..+.++.|+.-. ..+.+...+
T Consensus 241 ~~~~~ra~~Lv~aGvd~i~vd~--a------~g--------~~~~~~~~i~~ir~~~~~~~~V~aGn----V~t~e~a~~ 300 (502)
T PRK07107 241 RDYAERVPALVEAGADVLCIDS--S------EG--------YSEWQKRTLDWIREKYGDSVKVGAGN----VVDREGFRY 300 (502)
T ss_pred hhHHHHHHHHHHhCCCeEeecC--c------cc--------ccHHHHHHHHHHHHhCCCCceEEecc----ccCHHHHHH
Confidence 3444555667778999999851 1 11 23456788899988765445554321 123333222
Q ss_pred HHHHHhhcCCccEEEE--ccCc----cccCCCCCCCCCCCCcccHHHHHHHHhh-------C-CCCeEEEecCCCCHHHH
Q 017176 157 FIYKVSSLSPTRHFII--HSRK----ALLNGISPAENRTIPPLKYEYYYALLRD-------F-PDLTFTLNGGINTVDEV 222 (376)
Q Consensus 157 ~i~~~~e~~Gvd~I~v--h~r~----~~~~g~~~~~~~~~~~~~~~~v~~~~~~-------~-~~ipVi~nGgI~s~~da 222 (376)
+.++|+|.|.| |+++ +...|.+. + .+..+.++.+. . .++|||+.|||++..|+
T Consensus 301 -----li~aGAd~I~vg~g~Gs~c~tr~~~~~g~------~--~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi 367 (502)
T PRK07107 301 -----LAEAGADFVKVGIGGGSICITREQKGIGR------G--QATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHM 367 (502)
T ss_pred -----HHHcCCCEEEECCCCCcCcccccccCCCc------c--HHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHH
Confidence 23699999988 4442 21222211 1 24444444332 1 13999999999999999
Q ss_pred HHHHHcCcCeeEEchHHhhCC
Q 017176 223 NAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 223 ~~~l~~Gad~VmiGRa~l~~P 243 (376)
.++|..|||+||+||.+-+.-
T Consensus 368 ~KAla~GA~~vm~G~~~ag~~ 388 (502)
T PRK07107 368 TLALAMGADFIMLGRYFARFD 388 (502)
T ss_pred HHHHHcCCCeeeeChhhhccc
Confidence 999999999999999988754
|
|
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.8e-05 Score=73.54 Aligned_cols=139 Identities=17% Similarity=0.219 Sum_probs=92.2
Q ss_pred EEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC----
Q 017176 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI---- 143 (376)
Q Consensus 68 ~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~---- 143 (376)
=+|+.|.- ..+ +.++.+.++|++-|-| |+...++|+++.++.+..-+. +-+++-.+-
T Consensus 78 pi~vGGGI-rs~-e~v~~~l~~Ga~kvvi---------------gt~a~~~~~~l~~~~~~fg~~--ivvslD~~~g~v~ 138 (234)
T PRK13587 78 DIEVGGGI-RTK-SQIMDYFAAGINYCIV---------------GTKGIQDTDWLKEMAHTFPGR--IYLSVDAYGEDIK 138 (234)
T ss_pred eEEEcCCc-CCH-HHHHHHHHCCCCEEEE---------------CchHhcCHHHHHHHHHHcCCC--EEEEEEeeCCEEE
Confidence 37887642 122 2345555678877644 555567899999998876432 222332222
Q ss_pred --CCCCCc--cHHHHHHHHHHHhhcCCccEEEEccC--ccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCC
Q 017176 144 --GVDDHD--SYNQLCDFIYKVSSLSPTRHFIIHSR--KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 217 (376)
Q Consensus 144 --g~~~~~--~~~~~~~~i~~~~e~~Gvd~I~vh~r--~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~ 217 (376)
||.+.. +..++++ .+++.|+..|.+..- .....|. +++.+.++.+. +++|||+.|||.
T Consensus 139 ~~gw~~~~~~~~~~~~~----~~~~~g~~~ii~tdi~~dGt~~G~-----------~~~li~~l~~~-~~ipvi~~GGi~ 202 (234)
T PRK13587 139 VNGWEEDTELNLFSFVR----QLSDIPLGGIIYTDIAKDGKMSGP-----------NFELTGQLVKA-TTIPVIASGGIR 202 (234)
T ss_pred ecCCcccCCCCHHHHHH----HHHHcCCCEEEEecccCcCCCCcc-----------CHHHHHHHHHh-CCCCEEEeCCCC
Confidence 454422 2344432 345689988877543 2233332 26777787765 489999999999
Q ss_pred CHHHHHHHHHcCcCeeEEchHHhh
Q 017176 218 TVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 218 s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
|.+|+.++++.|+++|.+|++++.
T Consensus 203 s~edi~~l~~~G~~~vivG~a~~~ 226 (234)
T PRK13587 203 HQQDIQRLASLNVHAAIIGKAAHQ 226 (234)
T ss_pred CHHHHHHHHHcCCCEEEEhHHHHh
Confidence 999999999999999999999986
|
|
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.9e-05 Score=72.14 Aligned_cols=169 Identities=15% Similarity=0.202 Sum_probs=94.5
Q ss_pred EEEEecC--CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCC-----Ccccccc--CCHHHHHHHHHHHhcc-cCcc
Q 017176 67 IVLQIGG--SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHG-----CFGVSLM--LDPKFVGEAMSVIAAN-TNVP 136 (376)
Q Consensus 67 ~~vQL~g--~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g-----~yG~~l~--~~~~~~~eiv~~v~~~-~~~p 136 (376)
++.=+.. .+.+...+.++.+.+.|+|.|||-+ |...-.-.| .+--+|. -+.+.+.++++++++. +++|
T Consensus 12 li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGi--PfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~p 89 (256)
T TIGR00262 12 FIPFVTAGDPTLETSLEIIKTLIEAGADALELGV--PFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIP 89 (256)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECC--CCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Confidence 4444443 3678889999999999999999954 432111000 0000111 2557888999999976 6788
Q ss_pred EEEEecCC------CCC----------------CccHHHHHHHHHHHhhcCCccEE-EEccCcc---------c------
Q 017176 137 VSVKCRIG------VDD----------------HDSYNQLCDFIYKVSSLSPTRHF-IIHSRKA---------L------ 178 (376)
Q Consensus 137 v~vKiR~g------~~~----------------~~~~~~~~~~i~~~~e~~Gvd~I-~vh~r~~---------~------ 178 (376)
+..=+-.+ .+. ...+++..+++ ..+.+.|++.+ .+..-+. .
T Consensus 90 lv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~-~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy 168 (256)
T TIGR00262 90 IGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLV-EAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVY 168 (256)
T ss_pred EEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHH-HHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEE
Confidence 64221111 000 00112211111 12233444433 1221110 0
Q ss_pred ---cCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHh
Q 017176 179 ---LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240 (376)
Q Consensus 179 ---~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l 240 (376)
..|.++.. ....+...+.+.++++. .+.||+.-|||.|++++.++.+.|||+|.+|++++
T Consensus 169 ~vs~~G~TG~~-~~~~~~~~~~i~~lr~~-~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv 231 (256)
T TIGR00262 169 LVSRAGVTGAR-NRAASALNELVKRLKAY-SAKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIV 231 (256)
T ss_pred EEECCCCCCCc-ccCChhHHHHHHHHHhh-cCCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 01222211 11222235667777664 47899999999999999999999999999999985
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.7e-05 Score=72.72 Aligned_cols=143 Identities=15% Similarity=0.175 Sum_probs=93.6
Q ss_pred CEEEEecCC--CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe--
Q 017176 66 PIVLQIGGS--NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC-- 141 (376)
Q Consensus 66 p~~vQL~g~--~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi-- 141 (376)
++-+|+.|. +.+ .++.+-+.|+|-|-+ |+...++|+++.++.+...+.+-+-+-+|.
T Consensus 74 ~~~v~vgGGIrs~e----~~~~~l~~Ga~~vvi---------------gT~a~~~p~~~~~~~~~~g~~ivvslD~k~~g 134 (243)
T TIGR01919 74 VVVEELSGGRRDDS----SLRAALTGGRARVNG---------------GTAALENPWWAAAVIRYGGDIVAVGLDVLEDG 134 (243)
T ss_pred CCCEEEcCCCCCHH----HHHHHHHcCCCEEEE---------------CchhhCCHHHHHHHHHHccccEEEEEEEecCC
Confidence 456788764 333 344455678887754 444557899999988876443222233331
Q ss_pred ------cCCCCCC-ccHHHHHHHHHHHhhcCCccEEEEcc--CccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE
Q 017176 142 ------RIGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHS--RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL 212 (376)
Q Consensus 142 ------R~g~~~~-~~~~~~~~~i~~~~e~~Gvd~I~vh~--r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~ 212 (376)
.-||.+. .+..+++ +.+++.|+..|.++. |....+|. +++.+.++.+. +++|||+
T Consensus 135 ~~~~v~~~Gw~~~~~~~~~~~----~~~~~~g~~~ii~tdI~~dGt~~G~-----------d~~l~~~l~~~-~~~pvia 198 (243)
T TIGR01919 135 EWHTLGNRGWSDGGGDLEVLE----RLLDSGGCSRVVVTDSKKDGLSGGP-----------NELLLEVVAAR-TDAIVAA 198 (243)
T ss_pred ceEEEECCCeecCCCcHHHHH----HHHHhCCCCEEEEEecCCcccCCCc-----------CHHHHHHHHhh-CCCCEEE
Confidence 1246541 1233332 334679999999874 33334442 26777777765 5899999
Q ss_pred ecCCCCHHHHHHHHH---cCcCeeEEchHHhhCC
Q 017176 213 NGGINTVDEVNAALR---KGAHHVMVGRAAYQNP 243 (376)
Q Consensus 213 nGgI~s~~da~~~l~---~Gad~VmiGRa~l~~P 243 (376)
+|||.+.+|+.++-+ .|+++|.+|++++..-
T Consensus 199 sGGv~s~eDl~~l~~l~~~Gv~gvivg~Al~~g~ 232 (243)
T TIGR01919 199 SGGSSLLDDLRAIKYLDEGGVSVAIGGKLLYARF 232 (243)
T ss_pred ECCcCCHHHHHHHHhhccCCeeEEEEhHHHHcCC
Confidence 999999999998743 5999999999987654
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.6e-05 Score=73.58 Aligned_cols=143 Identities=16% Similarity=0.276 Sum_probs=92.2
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhc-ccCccEEEEec---
Q 017176 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-NTNVPVSVKCR--- 142 (376)
Q Consensus 67 ~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~-~~~~pv~vKiR--- 142 (376)
+-+|+.|.-. .+ +.++.+.++|++-|-| |+...++|+++.++.+..-+ .+-+-+.+|-.
T Consensus 74 ~~i~vgGGIr-s~-ed~~~ll~~Ga~~Vvi---------------gt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v 136 (229)
T PF00977_consen 74 IPIQVGGGIR-SI-EDAERLLDAGADRVVI---------------GTEALEDPELLEELAERYGSQRIVVSLDARDGYKV 136 (229)
T ss_dssp SEEEEESSE--SH-HHHHHHHHTT-SEEEE---------------SHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEE
T ss_pred ccEEEeCccC-cH-HHHHHHHHhCCCEEEe---------------ChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEE
Confidence 6678877522 22 2344555678876544 55667889999999998755 22222223221
Q ss_pred --CCCCCC--ccHHHHHHHHHHHhhcCCccEEEEccC--ccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCC
Q 017176 143 --IGVDDH--DSYNQLCDFIYKVSSLSPTRHFIIHSR--KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 216 (376)
Q Consensus 143 --~g~~~~--~~~~~~~~~i~~~~e~~Gvd~I~vh~r--~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI 216 (376)
-||.+. .+..++++ .+++.|+..+.++.= ....+|. +++.+.++.+.+ ++|||++|||
T Consensus 137 ~~~gw~~~~~~~~~~~~~----~~~~~g~~~ii~tdi~~dGt~~G~-----------d~~~~~~l~~~~-~~~viasGGv 200 (229)
T PF00977_consen 137 ATNGWQESSGIDLEEFAK----RLEELGAGEIILTDIDRDGTMQGP-----------DLELLKQLAEAV-NIPVIASGGV 200 (229)
T ss_dssp EETTTTEEEEEEHHHHHH----HHHHTT-SEEEEEETTTTTTSSS-------------HHHHHHHHHHH-SSEEEEESS-
T ss_pred EecCccccCCcCHHHHHH----HHHhcCCcEEEEeeccccCCcCCC-----------CHHHHHHHHHHc-CCCEEEecCC
Confidence 145543 24555543 345789999998743 2233332 277778887776 9999999999
Q ss_pred CCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 217 NTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 217 ~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
.+.+|+.++.+.|+|+|.+|++++..
T Consensus 201 ~~~~Dl~~l~~~G~~gvivg~al~~g 226 (229)
T PF00977_consen 201 RSLEDLRELKKAGIDGVIVGSALHEG 226 (229)
T ss_dssp -SHHHHHHHHHTTECEEEESHHHHTT
T ss_pred CCHHHHHHHHHCCCcEEEEehHhhCC
Confidence 99999999999999999999999643
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.1e-05 Score=80.21 Aligned_cols=134 Identities=16% Similarity=0.108 Sum_probs=87.9
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHH
Q 017176 80 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFI 158 (376)
Q Consensus 80 ~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i 158 (376)
.+.++.+.++|.|.|-+... ++. ...+.+.++.+|+.. +.+|.+. +..+.+....
T Consensus 229 ~~~a~~Lv~aGvd~i~~D~a--------~~~--------~~~~~~~i~~ik~~~p~~~v~ag------nv~t~~~a~~-- 284 (479)
T PRK07807 229 AAKARALLEAGVDVLVVDTA--------HGH--------QEKMLEALRAVRALDPGVPIVAG------NVVTAEGTRD-- 284 (479)
T ss_pred HHHHHHHHHhCCCEEEEecc--------CCc--------cHHHHHHHHHHHHHCCCCeEEee------ccCCHHHHHH--
Confidence 34455566678888777531 111 367889999999875 5666551 2234544322
Q ss_pred HHHhhcCCccEEEEccCc---cccCCCCCCCCCCCCcccHHHHHHHHhh--CCCCeEEEecCCCCHHHHHHHHHcCcCee
Q 017176 159 YKVSSLSPTRHFIIHSRK---ALLNGISPAENRTIPPLKYEYYYALLRD--FPDLTFTLNGGINTVDEVNAALRKGAHHV 233 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~---~~~~g~~~~~~~~~~~~~~~~v~~~~~~--~~~ipVi~nGgI~s~~da~~~l~~Gad~V 233 (376)
+.++|+|.|-|--++ +..++..+.. .| .+..+.++.+. ..++|||+.|||.++.|+.+++..|||+|
T Consensus 285 ---l~~aGad~v~vgig~gsictt~~~~~~~---~p--~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~~v 356 (479)
T PRK07807 285 ---LVEAGADIVKVGVGPGAMCTTRMMTGVG---RP--QFSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNV 356 (479)
T ss_pred ---HHHcCCCEEEECccCCcccccccccCCc---hh--HHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCCee
Confidence 336999999874222 1122221111 12 26666666542 13799999999999999999999999999
Q ss_pred EEchHHhhCCch
Q 017176 234 MVGRAAYQNPWY 245 (376)
Q Consensus 234 miGRa~l~~P~l 245 (376)
|+|+.|.....-
T Consensus 357 ~~g~~~ag~~Es 368 (479)
T PRK07807 357 MIGSWFAGTYES 368 (479)
T ss_pred eccHhhccCccC
Confidence 999999977653
|
|
| >KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.6e-05 Score=77.31 Aligned_cols=63 Identities=22% Similarity=0.306 Sum_probs=47.2
Q ss_pred HhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017176 161 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 161 ~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
++.++|+|.|++..- +|.+- . -.+.++-+++.+|++.||+ |.+-|.++++..+..|||++=+|
T Consensus 258 ll~~aGvdvviLDSS----qGnS~------~--qiemik~iK~~yP~l~Via-GNVVT~~qa~nLI~aGaDgLrVG 320 (503)
T KOG2550|consen 258 LLVQAGVDVVILDSS----QGNSI------Y--QLEMIKYIKETYPDLQIIA-GNVVTKEQAANLIAAGADGLRVG 320 (503)
T ss_pred HhhhcCCcEEEEecC----CCcch------h--HHHHHHHHHhhCCCceeec-cceeeHHHHHHHHHccCceeEec
Confidence 455799999998642 23221 1 1567777788899998876 78889999999999999986554
|
|
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.7e-05 Score=71.83 Aligned_cols=165 Identities=15% Similarity=0.186 Sum_probs=96.1
Q ss_pred CEEEEecC--CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCC-----Ccccccc--CCHHHHHHHHHHHhcccCcc
Q 017176 66 PIVLQIGG--SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHG-----CFGVSLM--LDPKFVGEAMSVIAANTNVP 136 (376)
Q Consensus 66 p~~vQL~g--~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g-----~yG~~l~--~~~~~~~eiv~~v~~~~~~p 136 (376)
.++.=+.. .+.+.+.+.++.+.+.|+|.|||.+ |...-.-.| .+--+|. -+.+.+.++++++|+..++|
T Consensus 16 ali~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGi--PfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p 93 (263)
T CHL00200 16 ALIPFITAGDPDIVITKKALKILDKKGADIIELGI--PYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAP 93 (263)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECC--CCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCC
Confidence 35555543 3678899999999999999999954 432111000 0011111 24678889999999877888
Q ss_pred EEEEecCCCCCC---ccHHHHHHHHHHHhhcCCccEEEEcc--------------------------Ccc----------
Q 017176 137 VSVKCRIGVDDH---DSYNQLCDFIYKVSSLSPTRHFIIHS--------------------------RKA---------- 177 (376)
Q Consensus 137 v~vKiR~g~~~~---~~~~~~~~~i~~~~e~~Gvd~I~vh~--------------------------r~~---------- 177 (376)
+.+= ++-+. -.+++.+ .. +.++|+|.+++|. -|.
T Consensus 94 ~vlm---~Y~N~i~~~G~e~F~---~~-~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~ 166 (263)
T CHL00200 94 IVIF---TYYNPVLHYGINKFI---KK-ISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARA 166 (263)
T ss_pred EEEE---ecccHHHHhCHHHHH---HH-HHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHh
Confidence 6431 11110 0122221 11 2245555555542 110
Q ss_pred --------ccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017176 178 --------LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 178 --------~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
...|.++.. ..++.--.+.+..+++ ..++||..-+||++++++.++.+.|||+|.+|++++.
T Consensus 167 a~gFIY~vS~~GvTG~~-~~~~~~~~~~i~~ir~-~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv~ 236 (263)
T CHL00200 167 APGCIYLVSTTGVTGLK-TELDKKLKKLIETIKK-MTNKPIILGFGISTSEQIKQIKGWNINGIVIGSACVQ 236 (263)
T ss_pred CCCcEEEEcCCCCCCCC-ccccHHHHHHHHHHHH-hcCCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 011332221 1111111234455544 5699999999999999999999999999999999975
|
|
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=98.22 E-value=7.3e-05 Score=67.77 Aligned_cols=43 Identities=16% Similarity=0.292 Sum_probs=37.8
Q ss_pred ccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017176 193 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 193 ~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
.+.+.+.++++.. ++|++.-|||+|+++++++++.|||+|.+|
T Consensus 163 v~~e~i~~Vk~~~-~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 163 VNPETISLVKKAS-GIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred CCHHHHHHHHHhh-CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 3467788887765 899999999999999999998899999987
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00021 Score=64.78 Aligned_cols=186 Identities=13% Similarity=0.078 Sum_probs=106.2
Q ss_pred CCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEec
Q 017176 18 DWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLN 97 (376)
Q Consensus 18 ~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN 97 (376)
..+-.....++...+ .|+-+-|.-+.-....+.+.+..+.+..+ +..+++-+.-.++..+ .++.+.++|+|.|-+|
T Consensus 8 ~~~~~~a~~~~~~l~-~~v~~iev~~~l~~~~g~~~i~~l~~~~~-~~~i~~d~k~~d~~~~--~~~~~~~~Gad~i~vh 83 (206)
T TIGR03128 8 LLDIEEALELAEKVA-DYVDIIEIGTPLIKNEGIEAVKEMKEAFP-DRKVLADLKTMDAGEY--EAEQAFAAGADIVTVL 83 (206)
T ss_pred CCCHHHHHHHHHHcc-cCeeEEEeCCHHHHHhCHHHHHHHHHHCC-CCEEEEEEeeccchHH--HHHHHHHcCCCEEEEe
Confidence 334444444555553 45555555321111111122223322222 3456666533355543 4566788999999998
Q ss_pred CCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe-cCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCc
Q 017176 98 CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC-RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK 176 (376)
Q Consensus 98 ~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi-R~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~ 176 (376)
+-+|. ..+.++++.+++ .+.++.+-+ .. . +..++.. .+ .+.|+|++.++.+.
T Consensus 84 ~~~~~-----------------~~~~~~i~~~~~-~g~~~~~~~~~~--~--t~~~~~~----~~-~~~g~d~v~~~pg~ 136 (206)
T TIGR03128 84 GVADD-----------------ATIKGAVKAAKK-HGKEVQVDLINV--K--DKVKRAK----EL-KELGADYIGVHTGL 136 (206)
T ss_pred ccCCH-----------------HHHHHHHHHHHH-cCCEEEEEecCC--C--ChHHHHH----HH-HHcCCCEEEEcCCc
Confidence 64431 234556666665 477777643 22 1 1122221 12 35699999997543
Q ss_pred cccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017176 177 ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 177 ~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
..+. ..+..++.+.++++..+.++|...||| +.+.+.++++.|||+|.+||+++..+.
T Consensus 137 ~~~~---------~~~~~~~~i~~l~~~~~~~~i~v~GGI-~~~n~~~~~~~Ga~~v~vGsai~~~~d 194 (206)
T TIGR03128 137 DEQA---------KGQNPFEDLQTILKLVKEARVAVAGGI-NLDTIPDVIKLGPDIVIVGGAITKAAD 194 (206)
T ss_pred Cccc---------CCCCCHHHHHHHHHhcCCCcEEEECCc-CHHHHHHHHHcCCCEEEEeehhcCCCC
Confidence 2111 111225566676665555667679999 899999999999999999999887655
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.1e-05 Score=78.96 Aligned_cols=130 Identities=16% Similarity=0.127 Sum_probs=84.8
Q ss_pred HHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHH
Q 017176 81 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIY 159 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~ 159 (376)
+-++.+.++|.|.|-|-... | +++.+.++++.+++.. ++||.+ | ...+.+...
T Consensus 228 ~ra~~Lv~aGVd~i~~D~a~-----------g-----~~~~~~~~i~~i~~~~~~~~vi~----g--~~~t~~~~~---- 281 (475)
T TIGR01303 228 GKAKALLDAGVDVLVIDTAH-----------G-----HQVKMISAIKAVRALDLGVPIVA----G--NVVSAEGVR---- 281 (475)
T ss_pred HHHHHHHHhCCCEEEEeCCC-----------C-----CcHHHHHHHHHHHHHCCCCeEEE----e--ccCCHHHHH----
Confidence 44445556788988775321 1 4578899999999865 788888 2 122333322
Q ss_pred HHhhcCCccEEEEccCcc---ccCCCCCCCCCCCCcccHHHHHHH---HhhCCCCeEEEecCCCCHHHHHHHHHcCcCee
Q 017176 160 KVSSLSPTRHFIIHSRKA---LLNGISPAENRTIPPLKYEYYYAL---LRDFPDLTFTLNGGINTVDEVNAALRKGAHHV 233 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh~r~~---~~~g~~~~~~~~~~~~~~~~v~~~---~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~V 233 (376)
.+.++|+|.|.|-++.. ..++..+. -.++ ...+.++ .++. ++|||+.|||.++.|+.++|..|||+|
T Consensus 282 -~l~~~G~d~i~vg~g~Gs~~ttr~~~~~---g~~~--~~a~~~~~~~~~~~-~~~viadGgi~~~~di~kala~GA~~v 354 (475)
T TIGR01303 282 -DLLEAGANIIKVGVGPGAMCTTRMMTGV---GRPQ--FSAVLECAAEARKL-GGHVWADGGVRHPRDVALALAAGASNV 354 (475)
T ss_pred -HHHHhCCCEEEECCcCCccccCccccCC---CCch--HHHHHHHHHHHHHc-CCcEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 23469999999865421 11221111 1111 2222222 3344 899999999999999999999999999
Q ss_pred EEchHHhhCC
Q 017176 234 MVGRAAYQNP 243 (376)
Q Consensus 234 miGRa~l~~P 243 (376)
|+|+.+-+.-
T Consensus 355 m~g~~~ag~~ 364 (475)
T TIGR01303 355 MVGSWFAGTY 364 (475)
T ss_pred eechhhcccc
Confidence 9999887553
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00017 Score=67.43 Aligned_cols=197 Identities=11% Similarity=0.084 Sum_probs=121.7
Q ss_pred hHHHHHHH-HHhCCCcEEEecceeecccccc-cchhhhhh-c-----cCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCC
Q 017176 21 DNHYRTLA-RLISKHAWLYTEMLAAETIIYQ-QGNLDRFL-A-----FSPEQHPIVLQIGGSNLDNLAKATELANAYNYD 92 (376)
Q Consensus 21 d~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~-~~~~~~~~-~-----~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d 92 (376)
+...+.+. -+.||++-++.|-....+.... .+.+...+ . ...-.-|+++|+.-+++. .+...+..+|+|
T Consensus 28 e~A~~ea~~l~~~GvD~viveN~~d~P~~~~~~p~tva~m~~i~~~v~~~~~~p~GvnvL~nd~~---aal~iA~a~ga~ 104 (257)
T TIGR00259 28 DKAWKDAMALEEGGVDAVMFENFFDAPFLKEVDPETVAAMAVIAGQLKSDVSIPLGINVLRNDAV---AALAIAMAVGAK 104 (257)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHhcCCCeeeeeecCCCH---HHHHHHHHhCCC
Confidence 44444442 4567899998887776655321 11111111 1 123356899999988764 344556678999
Q ss_pred EEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCc--cEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEE
Q 017176 93 EINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV--PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHF 170 (376)
Q Consensus 93 ~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~--pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I 170 (376)
+|-+|.-|-.. + +++ | -+..+...+.+.-+.+...+.+ .|-+|...-..+ .++++.++. .....++|+|
T Consensus 105 FIRv~~~~g~~-~--~d~-G-~~~~~a~e~~r~r~~l~~~v~i~adV~~kh~~~l~~-~~~~e~a~~---~~~~~~aDav 175 (257)
T TIGR00259 105 FIRVNVLTGVY-A--SDQ-G-IIEGNAGELIRYKKLLGSEVKILADIVVKHAVHLGN-RDLESIALD---TVERGLADAV 175 (257)
T ss_pred EEEEccEeeeE-e--ccc-c-cccccHHHHHHHHHHcCCCcEEEeceeecccCcCCC-CCHHHHHHH---HHHhcCCCEE
Confidence 99998654432 1 232 3 4455666666666665532221 233444331112 346665432 2234569999
Q ss_pred EEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017176 171 IIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 171 ~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
+|+|... |. +.+|+.+.++++..+++||+.+||| +++.+.++++. ||||.+|+++=.+.
T Consensus 176 ivtG~~T---G~---------~~d~~~l~~vr~~~~~~PvllggGv-t~eNv~e~l~~-adGviVgS~~K~~G 234 (257)
T TIGR00259 176 ILSGKTT---GT---------EVDLELLKLAKETVKDTPVLAGSGV-NLENVEELLSI-ADGVIVATTIKKDG 234 (257)
T ss_pred EECcCCC---CC---------CCCHHHHHHHHhccCCCeEEEECCC-CHHHHHHHHhh-CCEEEECCCcccCC
Confidence 9998652 21 1238888887765668999999999 89999999986 99999999976433
|
Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis. |
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.4e-05 Score=71.92 Aligned_cols=140 Identities=20% Similarity=0.243 Sum_probs=90.8
Q ss_pred EEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC----
Q 017176 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI---- 143 (376)
Q Consensus 68 ~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~---- 143 (376)
-+|+.|.-. .+ +.++.+-++|+|-|-| |+...++|+++.++ .+.-+. +-+++-.+-
T Consensus 75 ~v~vGGGIr-s~-e~~~~~l~~Ga~rvvi---------------gT~a~~~p~~l~~~-~~~~~~--ivvslD~k~g~v~ 134 (241)
T PRK14114 75 HIQIGGGIR-SL-DYAEKLRKLGYRRQIV---------------SSKVLEDPSFLKFL-KEIDVE--PVFSLDTRGGKVA 134 (241)
T ss_pred cEEEecCCC-CH-HHHHHHHHCCCCEEEE---------------CchhhCCHHHHHHH-HHhCCC--EEEEEEccCCEEe
Confidence 468876421 11 2344455678887654 44455789998888 443222 233333332
Q ss_pred --CCCCCc--cHHHHHHHHHHHhhcCCccEEEEcc--CccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCC
Q 017176 144 --GVDDHD--SYNQLCDFIYKVSSLSPTRHFIIHS--RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 217 (376)
Q Consensus 144 --g~~~~~--~~~~~~~~i~~~~e~~Gvd~I~vh~--r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~ 217 (376)
||.+.. +..+++ +.+++.|+..|.+.. |..+.+|. +++.+.++.+. +++|||++|||.
T Consensus 135 ~~gw~~~~~~~~~e~~----~~~~~~g~~~ii~tdI~rdGt~~G~-----------d~el~~~l~~~-~~~pviasGGv~ 198 (241)
T PRK14114 135 FKGWLAEEEIDPVSLL----KRLKEYGLEEIVHTEIEKDGTLQEH-----------DFSLTRKIAIE-AEVKVFAAGGIS 198 (241)
T ss_pred eCCCeecCCCCHHHHH----HHHHhcCCCEEEEEeechhhcCCCc-----------CHHHHHHHHHH-CCCCEEEECCCC
Confidence 454422 233433 334679999998863 33344442 27788888776 599999999999
Q ss_pred CHHHHHHHHHc-----C-cCeeEEchHHhhCC
Q 017176 218 TVDEVNAALRK-----G-AHHVMVGRAAYQNP 243 (376)
Q Consensus 218 s~~da~~~l~~-----G-ad~VmiGRa~l~~P 243 (376)
|.+|+.++.+. | +++|.+|++++..-
T Consensus 199 s~~Dl~~l~~~~~~~~g~v~gvivg~Al~~g~ 230 (241)
T PRK14114 199 SENSLKTAQRVHRETNGLLKGVIVGRAFLEGI 230 (241)
T ss_pred CHHHHHHHHhcccccCCcEEEEEEehHHHCCC
Confidence 99999998874 5 99999999987553
|
|
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=98.17 E-value=5.7e-05 Score=70.51 Aligned_cols=158 Identities=17% Similarity=0.198 Sum_probs=91.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCcccccc----------CCHHHHHHHHHHHhcccCccEEE--Ee
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLM----------LDPKFVGEAMSVIAANTNVPVSV--KC 141 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~----------~~~~~~~eiv~~v~~~~~~pv~v--Ki 141 (376)
.+.+.+.+.++.++++|+|.|||++ |.....-. |-... -+.+...++++.+++.+++|+.+ +.
T Consensus 11 P~~~~~~~~~~~l~~~Gad~iel~i--PfsdPv~D---G~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~ 85 (242)
T cd04724 11 PDLETTLEILKALVEAGADIIELGI--PFSDPVAD---GPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYY 85 (242)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECC--CCCCCCCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEec
Confidence 3668899999999999999999996 54322211 21111 13457889999999877788654 43
Q ss_pred cC----CCCCC----------------ccHHHHHHHHHHHhhcCCccEEE-EccCcc--------c-c---------CCC
Q 017176 142 RI----GVDDH----------------DSYNQLCDFIYKVSSLSPTRHFI-IHSRKA--------L-L---------NGI 182 (376)
Q Consensus 142 R~----g~~~~----------------~~~~~~~~~i~~~~e~~Gvd~I~-vh~r~~--------~-~---------~g~ 182 (376)
.+ |.+.. ..+++..+++ +.+.+.|++.+. +..-|. . . .|.
T Consensus 86 n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~-~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~ 164 (242)
T cd04724 86 NPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFR-EAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGV 164 (242)
T ss_pred CHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHH-HHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCC
Confidence 32 10000 0122221111 122234443333 111110 0 0 011
Q ss_pred CCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHh
Q 017176 183 SPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240 (376)
Q Consensus 183 ~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l 240 (376)
.+.+. ...+...+.+.++++. .++||+.-|||++.+++.++.+. ||+|.+|++++
T Consensus 165 tG~~~-~~~~~~~~~i~~lr~~-~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv 219 (242)
T cd04724 165 TGART-ELPDDLKELIKRIRKY-TDLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALV 219 (242)
T ss_pred CCCcc-CCChhHHHHHHHHHhc-CCCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHH
Confidence 11110 0112224566666654 58999999999999999999988 99999999875
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=98.15 E-value=2e-05 Score=72.91 Aligned_cols=79 Identities=24% Similarity=0.376 Sum_probs=63.2
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.+++.|++.+++..-.....|. +.+++.+.++.+. +++||++.|||.+.+|++++++.|||.|.+|++
T Consensus 36 a~~~~~~g~~~i~v~dld~~~~g~---------~~~~~~i~~i~~~-~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~ 105 (233)
T PRK00748 36 AKAWEDQGAKWLHLVDLDGAKAGK---------PVNLELIEAIVKA-VDIPVQVGGGIRSLETVEALLDAGVSRVIIGTA 105 (233)
T ss_pred HHHHHHcCCCEEEEEeCCccccCC---------cccHHHHHHHHHH-CCCCEEEcCCcCCHHHHHHHHHcCCCEEEECch
Confidence 344667999999998754332221 1237778888776 489999999999999999999999999999999
Q ss_pred HhhCCchhh
Q 017176 239 AYQNPWYTL 247 (376)
Q Consensus 239 ~l~~P~lf~ 247 (376)
++.+|.++.
T Consensus 106 ~l~~~~~l~ 114 (233)
T PRK00748 106 AVKNPELVK 114 (233)
T ss_pred HHhCHHHHH
Confidence 999998753
|
|
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=98.13 E-value=9.8e-05 Score=66.93 Aligned_cols=152 Identities=15% Similarity=0.246 Sum_probs=90.1
Q ss_pred EEecCCCHHHHHHHHHHHHHCCCCEEEec-CCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccE--EEEecCCC
Q 017176 69 LQIGGSNLDNLAKATELANAYNYDEINLN-CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPV--SVKCRIGV 145 (376)
Q Consensus 69 vQL~g~~~~~~~~aa~~~~~~G~d~IeiN-~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv--~vKiR~g~ 145 (376)
+.|...|++.+.+.++.+.++|+|.|++- +.+|.-. +...-.++++++++.++.|+ -++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~-------------~~~~~~~~v~~i~~~~~~~v~v~lm~~--- 66 (210)
T TIGR01163 3 PSILSADFARLGEEVKAVEEAGADWIHVDVMDGHFVP-------------NLTFGPPVLEALRKYTDLPIDVHLMVE--- 66 (210)
T ss_pred chhhcCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC-------------CcccCHHHHHHHHhcCCCcEEEEeeeC---
Confidence 45667788999999999999999999996 3334321 11123455666665555564 34433
Q ss_pred CCCccHHHHHHHHHHHhhcCCccEEEEccCcc--------cc--CCCC------C-------------CC----------
Q 017176 146 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA--------LL--NGIS------P-------------AE---------- 186 (376)
Q Consensus 146 ~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~--------~~--~g~~------~-------------~~---------- 186 (376)
+ ..+. +.. +.++|+|.|++|+... .. .|.. . .+
T Consensus 67 -~---~~~~---~~~-~~~~gadgv~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g 138 (210)
T TIGR01163 67 -N---PDRY---IED-FAEAGADIITVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPG 138 (210)
T ss_pred -C---HHHH---HHH-HHHcCCCEEEEccCCchhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCC
Confidence 1 1122 222 2367888888886520 00 0000 0 00
Q ss_pred --CCCCCcccHHHHHHHHhhC----CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 187 --NRTIPPLKYEYYYALLRDF----PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 187 --~~~~~~~~~~~v~~~~~~~----~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
.....+..++.+.++++.. +++||.+.|||+ ++.+.+++++|+|+|.+||+++..+..
T Consensus 139 ~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~~gad~iivgsai~~~~d~ 202 (210)
T TIGR01163 139 FGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAEAGADILVAGSAIFGADDY 202 (210)
T ss_pred CCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHcCCCEEEEChHHhCCCCH
Confidence 0000111122333333221 247999999995 799999999999999999999987764
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00013 Score=68.37 Aligned_cols=162 Identities=18% Similarity=0.198 Sum_probs=94.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCC-----Ccccccc--CCHHHHHHHHHHHhcccCccEEEEecC---
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHG-----CFGVSLM--LDPKFVGEAMSVIAANTNVPVSVKCRI--- 143 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g-----~yG~~l~--~~~~~~~eiv~~v~~~~~~pv~vKiR~--- 143 (376)
.+.+.+.+.++.+.+.|+|.|||-+ |...-.-.| .+--+|. -+.+.+.++++.+|+..++|+.+=.-.
T Consensus 13 P~~e~~~~~~~~l~~~Gad~iElGi--PfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i 90 (250)
T PLN02591 13 PDLDTTAEALRLLDACGADVIELGV--PYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNPI 90 (250)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECC--CCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHH
Confidence 4678899999999999999999954 332111000 0011111 256788899999997777886432111
Q ss_pred ---CCCC----------------CccHHHHHHHHHHHhhcCCccEEEEc-cCcc------------------ccCCCCCC
Q 017176 144 ---GVDD----------------HDSYNQLCDFIYKVSSLSPTRHFIIH-SRKA------------------LLNGISPA 185 (376)
Q Consensus 144 ---g~~~----------------~~~~~~~~~~i~~~~e~~Gvd~I~vh-~r~~------------------~~~g~~~~ 185 (376)
|.+. .-.++|..++ ...+.+.|++.|.+- .-+. ...|.++.
T Consensus 91 ~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~-~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~ 169 (250)
T PLN02591 91 LKRGIDKFMATIKEAGVHGLVVPDLPLEETEAL-RAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGA 169 (250)
T ss_pred HHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHH-HHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCC
Confidence 1110 0012232222 233445666665542 1110 00122222
Q ss_pred CCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHh
Q 017176 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240 (376)
Q Consensus 186 ~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l 240 (376)
. ...+....+.+..+++ .+++||+..-||.+++++.++++.|||||.+|++++
T Consensus 170 ~-~~~~~~~~~~i~~vk~-~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalV 222 (250)
T PLN02591 170 R-ASVSGRVESLLQELKE-VTDKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMV 222 (250)
T ss_pred C-cCCchhHHHHHHHHHh-cCCCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHH
Confidence 1 1112211334555555 569999999999999999999999999999999987
|
|
| >cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00012 Score=71.99 Aligned_cols=138 Identities=15% Similarity=0.106 Sum_probs=99.2
Q ss_pred CCEEEEecCC--CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEE
Q 017176 65 HPIVLQIGGS--NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVK 140 (376)
Q Consensus 65 ~p~~vQL~g~--~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vK 140 (376)
.|+-..+... +++++.+.++.+.+.||+.+.|+.|..... .+++++..++++++|+.+ +.++.+.
T Consensus 127 v~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~-----------~~~~~~d~~~v~~ir~~~g~~~~l~vD 195 (357)
T cd03316 127 VRVYASGGGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDSG-----------GEDLREDLARVRAVREAVGPDVDLMVD 195 (357)
T ss_pred eeeEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcc-----------hHHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 3444444444 589999999999999999999987754211 167889999999999987 4677777
Q ss_pred ecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHH
Q 017176 141 CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVD 220 (376)
Q Consensus 141 iR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~ 220 (376)
..-+|+ .++.++++. .+++.|+++|.-. +++..++..+.+++. .++||++...+.+++
T Consensus 196 aN~~~~----~~~a~~~~~-~l~~~~i~~iEqP----------------~~~~~~~~~~~l~~~-~~ipi~~dE~~~~~~ 253 (357)
T cd03316 196 ANGRWD----LAEAIRLAR-ALEEYDLFWFEEP----------------VPPDDLEGLARLRQA-TSVPIAAGENLYTRW 253 (357)
T ss_pred CCCCCC----HHHHHHHHH-HhCccCCCeEcCC----------------CCccCHHHHHHHHHh-CCCCEEeccccccHH
Confidence 665664 345555443 4466787775410 112235666677665 489999999999999
Q ss_pred HHHHHHH-cCcCeeEE
Q 017176 221 EVNAALR-KGAHHVMV 235 (376)
Q Consensus 221 da~~~l~-~Gad~Vmi 235 (376)
++.++++ ..+|.|++
T Consensus 254 ~~~~~i~~~~~d~v~~ 269 (357)
T cd03316 254 EFRDLLEAGAVDIIQP 269 (357)
T ss_pred HHHHHHHhCCCCEEec
Confidence 9999998 66898876
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD). |
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00014 Score=67.32 Aligned_cols=136 Identities=14% Similarity=0.152 Sum_probs=88.7
Q ss_pred EEecCC--CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHH-hcccCccEEEEec---
Q 017176 69 LQIGGS--NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI-AANTNVPVSVKCR--- 142 (376)
Q Consensus 69 vQL~g~--~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v-~~~~~~pv~vKiR--- 142 (376)
+|+.|. +.+ -++.+-+.|++-|-| |+...++|+++.++.+.. .+.+ -+++-.|
T Consensus 76 v~vGGGIrs~e----~~~~~l~~Ga~kvvi---------------gt~a~~~p~~~~~~~~~~g~~~i--vvslD~~~~~ 134 (232)
T PRK13586 76 IQVGGGIRDIE----KAKRLLSLDVNALVF---------------STIVFTNFNLFHDIVREIGSNRV--LVSIDYDNTK 134 (232)
T ss_pred EEEeCCcCCHH----HHHHHHHCCCCEEEE---------------CchhhCCHHHHHHHHHHhCCCCE--EEEEEcCCCC
Confidence 788764 333 234455578887744 455567899999998887 3332 2222221
Q ss_pred ----CCCCCC-ccHHHHHHHHHHHhhcCCccEEEEccC--ccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecC
Q 017176 143 ----IGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSR--KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 215 (376)
Q Consensus 143 ----~g~~~~-~~~~~~~~~i~~~~e~~Gvd~I~vh~r--~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGg 215 (376)
-||.+. .+..+++ +.+++.|+..|.++.= ....+|. +++.+..+.+. ..|+|++||
T Consensus 135 ~v~~~gw~~~~~~~~e~~----~~l~~~g~~~ii~tdI~~dGt~~G~-----------d~el~~~~~~~--~~~viasGG 197 (232)
T PRK13586 135 RVLIRGWKEKSMEVIDGI----KKVNELELLGIIFTYISNEGTTKGI-----------DYNVKDYARLI--RGLKEYAGG 197 (232)
T ss_pred EEEccCCeeCCCCHHHHH----HHHHhcCCCEEEEecccccccCcCc-----------CHHHHHHHHhC--CCCEEEECC
Confidence 146442 1233433 3456899998888743 3333442 26666666543 345999999
Q ss_pred CCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 216 INTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 216 I~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
|.+.+|+.++.+.|+|+|.+|++++..
T Consensus 198 v~s~~Dl~~l~~~G~~gvivg~Aly~g 224 (232)
T PRK13586 198 VSSDADLEYLKNVGFDYIIVGMAFYLG 224 (232)
T ss_pred CCCHHHHHHHHHCCCCEEEEehhhhcC
Confidence 999999999988999999999999743
|
|
| >PRK00507 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00016 Score=66.48 Aligned_cols=131 Identities=17% Similarity=0.116 Sum_probs=84.0
Q ss_pred HHHHHHHHHCCCCEEEe--cCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHH
Q 017176 80 AKATELANAYNYDEINL--NCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDF 157 (376)
Q Consensus 80 ~~aa~~~~~~G~d~Iei--N~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~ 157 (376)
...++.+.+.|+|.||+ |.+++ ...+.+.+.+-+.++++.+ .|+.+|+-+-..+. +-+++ ..
T Consensus 77 ~~e~~~Ai~~GA~EiD~Vin~~~~-------------~~g~~~~v~~ei~~v~~~~-~~~~lKvIlEt~~L-~~e~i-~~ 140 (221)
T PRK00507 77 AFEAKDAIANGADEIDMVINIGAL-------------KSGDWDAVEADIRAVVEAA-GGAVLKVIIETCLL-TDEEK-VK 140 (221)
T ss_pred HHHHHHHHHcCCceEeeeccHHHh-------------cCCCHHHHHHHHHHHHHhc-CCceEEEEeecCcC-CHHHH-HH
Confidence 34555666789999996 33333 2335677777777777755 36788874422221 12233 23
Q ss_pred HHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017176 158 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
+.+++.++|+|+|..+.+.. ..| ...+.+..+.+.. .+++|.++|||+|.+++.++++.||+-+...
T Consensus 141 a~~~~~~agadfIKTsTG~~-~~g-----------at~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aGA~riGtS 208 (221)
T PRK00507 141 ACEIAKEAGADFVKTSTGFS-TGG-----------ATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAGATRLGTS 208 (221)
T ss_pred HHHHHHHhCCCEEEcCCCCC-CCC-----------CCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcCcceEccC
Confidence 45566789999887665431 122 1244444444443 3699999999999999999999999987766
Q ss_pred hH
Q 017176 237 RA 238 (376)
Q Consensus 237 Ra 238 (376)
++
T Consensus 209 ~~ 210 (221)
T PRK00507 209 AG 210 (221)
T ss_pred cH
Confidence 55
|
|
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00022 Score=63.62 Aligned_cols=48 Identities=25% Similarity=0.347 Sum_probs=42.2
Q ss_pred cHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017176 194 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 194 ~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
++.+++++.+ .+++||+-|.+.||+++.++++.||++|.+|.++ ..|.
T Consensus 169 Df~lvk~l~~--~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAI-TRp~ 216 (229)
T COG3010 169 DFQLVKQLSD--AGCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAI-TRPE 216 (229)
T ss_pred cHHHHHHHHh--CCCeEEeeCCCCCHHHHHHHHHhCCeEEEECccc-CCHH
Confidence 4888888876 3899999999999999999999999999999865 5554
|
|
| >PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.2e-05 Score=68.64 Aligned_cols=153 Identities=17% Similarity=0.143 Sum_probs=98.5
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEe-cCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEE
Q 017176 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINL-NCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVK 140 (376)
Q Consensus 63 ~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~Iei-N~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vK 140 (376)
..-|+.|. +-+|+.|..+. ++|+|.||| |+.|-+.+ |. .-..+.+.++.++.|+-. +++++|-
T Consensus 60 s~lPICVS--aVep~~f~~aV----~AGAdliEIGNfDsFY~q----Gr-----~f~a~eVL~Lt~~tR~LLP~~~LsVT 124 (242)
T PF04481_consen 60 SNLPICVS--AVEPELFVAAV----KAGADLIEIGNFDSFYAQ----GR-----RFSAEEVLALTRETRSLLPDITLSVT 124 (242)
T ss_pred CCCCeEee--cCCHHHHHHHH----HhCCCEEEecchHHHHhc----CC-----eecHHHHHHHHHHHHHhCCCCceEEe
Confidence 46677765 67899998765 489999999 77776643 11 124678889999988865 6677775
Q ss_pred ecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccC---CCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCC
Q 017176 141 CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN---GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 217 (376)
Q Consensus 141 iR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~---g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~ 217 (376)
+.=- -.+++=++ ++..+++.|+|.|.-.|++.... |..+.-....+ .+...+++.+. +++||+...|+.
T Consensus 125 VPHi----L~ld~Qv~-LA~~L~~~GaDiIQTEGgtss~p~~~g~lglIekaap--TLAaay~ISr~-v~iPVlcASGlS 196 (242)
T PF04481_consen 125 VPHI----LPLDQQVQ-LAEDLVKAGADIIQTEGGTSSKPTSPGILGLIEKAAP--TLAAAYAISRA-VSIPVLCASGLS 196 (242)
T ss_pred cCcc----ccHHHHHH-HHHHHHHhCCcEEEcCCCCCCCCCCcchHHHHHHHhH--HHHHHHHHHhc-cCCceEeccCcc
Confidence 4321 12222232 34556789999999888874211 11110000000 13444566665 599999999996
Q ss_pred CHHHHHHHHHcCcCeeEEchHH
Q 017176 218 TVDEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 218 s~~da~~~l~~Gad~VmiGRa~ 239 (376)
+. .+--++..||.||.+|.+.
T Consensus 197 ~v-T~PmAiaaGAsGVGVGSav 217 (242)
T PF04481_consen 197 AV-TAPMAIAAGASGVGVGSAV 217 (242)
T ss_pred hh-hHHHHHHcCCcccchhHHh
Confidence 55 4455667899999999985
|
As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis. |
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00044 Score=64.06 Aligned_cols=140 Identities=16% Similarity=0.147 Sum_probs=82.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC-CCCC--CccH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI-GVDD--HDSY 151 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~-g~~~--~~~~ 151 (376)
+...+...++.+.+.|+|+|++..-.. ...+ ....+.+.++.+..+ ..++|+.+-... |..- ..+.
T Consensus 74 ~~~~~~~~v~~a~~~Ga~~v~~~~~~~------~~~~----~~~~~~i~~v~~~~~-~~g~~~iie~~~~g~~~~~~~~~ 142 (235)
T cd00958 74 NDKVLVASVEDAVRLGADAVGVTVYVG------SEEE----REMLEELARVAAEAH-KYGLPLIAWMYPRGPAVKNEKDP 142 (235)
T ss_pred CchhhhcCHHHHHHCCCCEEEEEEecC------CchH----HHHHHHHHHHHHHHH-HcCCCEEEEEeccCCcccCccCH
Confidence 345555567778889999995532100 0000 011123333333322 347788774433 1100 0111
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCC--CCHHH----HHHH
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI--NTVDE----VNAA 225 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI--~s~~d----a~~~ 225 (376)
+.+....+++.+.|+|+|-+.. + + ..+.++++++.. .+||++.||| .|.++ +.++
T Consensus 143 -~~i~~~~~~a~~~GaD~Ik~~~-~----~------------~~~~~~~i~~~~-~~pvv~~GG~~~~~~~~~l~~~~~~ 203 (235)
T cd00958 143 -DLIAYAARIGAELGADIVKTKY-T----G------------DAESFKEVVEGC-PVPVVIAGGPKKDSEEEFLKMVYDA 203 (235)
T ss_pred -HHHHHHHHHHHHHCCCEEEecC-C----C------------CHHHHHHHHhcC-CCCEEEeCCCCCCCHHHHHHHHHHH
Confidence 2222223445678999999842 1 0 156677777654 7999999987 67766 6677
Q ss_pred HHcCcCeeEEchHHhhCCc
Q 017176 226 LRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 226 l~~Gad~VmiGRa~l~~P~ 244 (376)
++.||++|.+||.++..|.
T Consensus 204 ~~~Ga~gv~vg~~i~~~~d 222 (235)
T cd00958 204 MEAGAAGVAVGRNIFQRPD 222 (235)
T ss_pred HHcCCcEEEechhhhcCCC
Confidence 8899999999999998876
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.1e-05 Score=73.14 Aligned_cols=76 Identities=18% Similarity=0.265 Sum_probs=58.9
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017176 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
+.+.|++.+++---+....+. ...++.+.++.+.. ++|++.+|||+|.++++.+++.|||.|++|+.++.
T Consensus 41 ~~~~G~~~l~i~dl~~~~~~~---------~~~~~~i~~i~~~~-~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~ 110 (241)
T PRK13585 41 WVDAGAETLHLVDLDGAFEGE---------RKNAEAIEKIIEAV-GVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAVE 110 (241)
T ss_pred HHHcCCCEEEEEechhhhcCC---------cccHHHHHHHHHHc-CCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 446899997553222211111 12367888888875 89999999999999999999999999999999999
Q ss_pred CCchhh
Q 017176 242 NPWYTL 247 (376)
Q Consensus 242 ~P~lf~ 247 (376)
+|+++.
T Consensus 111 ~~~~~~ 116 (241)
T PRK13585 111 NPEIVR 116 (241)
T ss_pred ChHHHH
Confidence 999863
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.5e-05 Score=72.30 Aligned_cols=79 Identities=22% Similarity=0.305 Sum_probs=63.0
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.+++.|++.|+++.......+. ..+++.+.++.+.. ++||++.|||.+.++++++++.||+.|++|++
T Consensus 36 a~~~~~~g~~~i~i~dl~~~~~~~---------~~n~~~~~~i~~~~-~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~ 105 (232)
T TIGR03572 36 ARIYNAKGADELIVLDIDASKRGR---------EPLFELISNLAEEC-FMPLTVGGGIRSLEDAKKLLSLGADKVSINTA 105 (232)
T ss_pred HHHHHHcCCCEEEEEeCCCcccCC---------CCCHHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHcCCCEEEEChh
Confidence 344568999999998665421111 22477788887764 89999999999999999998899999999999
Q ss_pred HhhCCchhh
Q 017176 239 AYQNPWYTL 247 (376)
Q Consensus 239 ~l~~P~lf~ 247 (376)
++.||.++.
T Consensus 106 ~l~~~~~~~ 114 (232)
T TIGR03572 106 ALENPDLIE 114 (232)
T ss_pred HhcCHHHHH
Confidence 999999753
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=98.02 E-value=7.3e-05 Score=68.81 Aligned_cols=47 Identities=23% Similarity=0.333 Sum_probs=41.8
Q ss_pred cHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017176 194 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 194 ~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
+++.+.++.+. .++|||+.|||.|.+|+.++.+.|||+|.+|++++.
T Consensus 172 d~eli~~i~~~-~~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~ 218 (221)
T TIGR00734 172 NLELLTKTLEL-SEHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHK 218 (221)
T ss_pred CHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhC
Confidence 37888888876 489999999999999999988899999999999864
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0016 Score=59.16 Aligned_cols=203 Identities=12% Similarity=0.129 Sum_probs=114.2
Q ss_pred CCCeecCCcEEEccCCCCChHHH-HHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecC-CCHHHH
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHY-RTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG-SNLDNL 79 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~-r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g-~~~~~~ 79 (376)
|++.++..|+++- -+.+++... ....++.| ..++..-+=.++......+.+..+ +.+.+-.+-.+=.| .+.++-
T Consensus 10 i~g~~f~SRLllG-Tgky~s~~~~~~av~asg-~~ivTvAlRR~~~~~~~~~~~l~~--l~~~~~~~LPNTaGc~taeEA 85 (262)
T COG2022 10 IAGKTFDSRLLLG-TGKYPSPAVLAEAVRASG-SEIVTVALRRVNATRPGGDGILDL--LIPLGVTLLPNTAGCRTAEEA 85 (262)
T ss_pred ecCeeeeeeEEEe-cCCCCCHHHHHHHHHhcC-CceEEEEEEeecccCCCcchHHHH--hhhcCcEeCCCccccCCHHHH
Confidence 6788999999885 344665555 44456654 555433333332211112222222 22233333333333 468889
Q ss_pred HHHHHHHHHC-CCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHH
Q 017176 80 AKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 158 (376)
Q Consensus 80 ~~aa~~~~~~-G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i 158 (376)
+..|+++.++ +-|+|-|-. ..... .|+-|+-...+-.+.+.+. ++-|..- .. + +. .+
T Consensus 86 v~tArlARE~~~t~wiKlEV-------i~d~~---tLlPD~~etl~Aae~Lv~e-GF~VlPY-----~~-d---D~--v~ 143 (262)
T COG2022 86 VRTARLAREALGTNWIKLEV-------IGDEK---TLLPDPIETLKAAEQLVKE-GFVVLPY-----TT-D---DP--VL 143 (262)
T ss_pred HHHHHHHHHHccCCeEEEEE-------ecCCc---ccCCChHHHHHHHHHHHhC-CCEEeec-----cC-C---CH--HH
Confidence 9999999886 457776632 22111 2455554333333333221 3333321 11 1 11 13
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.+++.||.+|---+- ..-+|. ...+-..+.-++++. ++|||..-||-++.|+..+++.|||+|++-++
T Consensus 144 arrLee~GcaavMPl~a-PIGSg~--------G~~n~~~l~iiie~a-~VPviVDAGiG~pSdAa~aMElG~DaVL~NTA 213 (262)
T COG2022 144 ARRLEEAGCAAVMPLGA-PIGSGL--------GLQNPYNLEIIIEEA-DVPVIVDAGIGTPSDAAQAMELGADAVLLNTA 213 (262)
T ss_pred HHHHHhcCceEeccccc-cccCCc--------CcCCHHHHHHHHHhC-CCCEEEeCCCCChhHHHHHHhcccceeehhhH
Confidence 56678999987653221 111111 122244555666666 99999999999999999999999999999887
Q ss_pred Hh
Q 017176 239 AY 240 (376)
Q Consensus 239 ~l 240 (376)
.-
T Consensus 214 iA 215 (262)
T COG2022 214 IA 215 (262)
T ss_pred hh
Confidence 64
|
|
| >PRK07695 transcriptional regulator TenI; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00013 Score=66.03 Aligned_cols=75 Identities=13% Similarity=0.151 Sum_probs=54.3
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017176 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
+++.|+|++.++.-...... ...++..++.+.++.+.. ++||++.||| +++++.++++.|+|+|++|+++..
T Consensus 111 a~~~Gadyi~~g~v~~t~~k------~~~~~~g~~~l~~~~~~~-~ipvia~GGI-~~~~~~~~~~~Ga~gvav~s~i~~ 182 (201)
T PRK07695 111 AEKNGADYVVYGHVFPTDCK------KGVPARGLEELSDIARAL-SIPVIAIGGI-TPENTRDVLAAGVSGIAVMSGIFS 182 (201)
T ss_pred HHHcCCCEEEECCCCCCCCC------CCCCCCCHHHHHHHHHhC-CCCEEEEcCC-CHHHHHHHHHcCCCEEEEEHHHhc
Confidence 34689999976532211100 012233477788877654 8999999999 999999999999999999999985
Q ss_pred CCc
Q 017176 242 NPW 244 (376)
Q Consensus 242 ~P~ 244 (376)
.+.
T Consensus 183 ~~~ 185 (201)
T PRK07695 183 SAN 185 (201)
T ss_pred CCC
Confidence 433
|
|
| >TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0004 Score=65.41 Aligned_cols=149 Identities=15% Similarity=0.190 Sum_probs=88.8
Q ss_pred CCCEEEEecCCC-----H--HHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcc---c
Q 017176 64 QHPIVLQIGGSN-----L--DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN---T 133 (376)
Q Consensus 64 ~~p~~vQL~g~~-----~--~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~---~ 133 (376)
+.++++.+.+.. + ..+...++.+.+.|+|+|++-. + +|. ..+.+.+ +.++++++. .
T Consensus 70 ~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~Ga~~v~~~~-----~------~g~--~~~~~~~-~~~~~i~~~~~~~ 135 (258)
T TIGR01949 70 DVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMGADAVSIHV-----N------VGS--DTEWEQI-RDLGMIAEICDDW 135 (258)
T ss_pred CCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCCCCEEEEEE-----e------cCC--chHHHHH-HHHHHHHHHHHHc
Confidence 455777774322 2 1344557778889999998843 1 121 0112333 445555443 4
Q ss_pred CccEEEEec-CCCCCC-ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEE
Q 017176 134 NVPVSVKCR-IGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 211 (376)
Q Consensus 134 ~~pv~vKiR-~g~~~~-~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi 211 (376)
++|+.|..- .|.... .+. +.+....+.+.+.|+|+|-+.. .+ ..+.+.++.+.. .+||+
T Consensus 136 g~~liv~~~~~Gvh~~~~~~-~~~~~~~~~a~~~GADyikt~~-----~~------------~~~~l~~~~~~~-~iPVv 196 (258)
T TIGR01949 136 GVPLLAMMYPRGPHIDDRDP-ELVAHAARLGAELGADIVKTPY-----TG------------DIDSFRDVVKGC-PAPVV 196 (258)
T ss_pred CCCEEEEEeccCcccccccH-HHHHHHHHHHHHHCCCEEeccC-----CC------------CHHHHHHHHHhC-CCcEE
Confidence 778777432 111000 112 2222223455679999999641 11 156677777654 79999
Q ss_pred EecCCC--CHHHHH----HHHHcCcCeeEEchHHhhCCch
Q 017176 212 LNGGIN--TVDEVN----AALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 212 ~nGgI~--s~~da~----~~l~~Gad~VmiGRa~l~~P~l 245 (376)
+.|||. |.+++. ++++.||+++.+||+++..+..
T Consensus 197 a~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~dp 236 (258)
T TIGR01949 197 VAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDDP 236 (258)
T ss_pred EecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCCH
Confidence 999999 655554 4457999999999999987764
|
Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally. |
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00023 Score=66.39 Aligned_cols=140 Identities=21% Similarity=0.186 Sum_probs=92.0
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccC----CHHHHHHHHHHH-hcccCccEEEEe
Q 017176 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLML----DPKFVGEAMSVI-AANTNVPVSVKC 141 (376)
Q Consensus 67 ~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~----~~~~~~eiv~~v-~~~~~~pv~vKi 141 (376)
+-+|+.|.-. . +.++.+-++|++.|-|+ +.+.+ +|+++.++.+.. .+.+-+-+.+|.
T Consensus 77 ~~v~vGGGIr-~--e~v~~~l~aGa~rVvIG---------------S~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~ 138 (253)
T TIGR02129 77 GGLQVGGGIN-D--TNAQEWLDEGASHVIVT---------------SWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRK 138 (253)
T ss_pred CCEEEeCCcC-H--HHHHHHHHcCCCEEEEC---------------cHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEE
Confidence 5678877643 2 55666777899988774 22323 488899998887 444333333431
Q ss_pred ---------cCCCCCCc--cHH-HHHHHHHHHhhcCCccEEEEcc--CccccCCCCCCCCCCCCcccHHHHHHHHhhCCC
Q 017176 142 ---------RIGVDDHD--SYN-QLCDFIYKVSSLSPTRHFIIHS--RKALLNGISPAENRTIPPLKYEYYYALLRDFPD 207 (376)
Q Consensus 142 ---------R~g~~~~~--~~~-~~~~~i~~~~e~~Gvd~I~vh~--r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ 207 (376)
.-||.+.. +.. +++ . .+++. +..|.++. |..+..|. +++.+.++.+. ++
T Consensus 139 ~~~g~~~V~~~GW~~~t~~~~~~e~~---~-~~~~~-~~~il~TdI~rDGtl~G~-----------dlel~~~l~~~-~~ 201 (253)
T TIGR02129 139 TQDGRWIVAMNKWQTITDLELNAETL---E-ELSKY-CDEFLIHAADVEGLCKGI-----------DEELVSKLGEW-SP 201 (253)
T ss_pred cCCCcEEEEECCCcccCCCChHHHHH---H-HHHhh-CCEEEEeeecccCccccC-----------CHHHHHHHHhh-CC
Confidence 11565532 232 333 2 33456 88888874 34444442 37788888776 59
Q ss_pred CeEEEecCCCCHHHHHHHHH--cCcCeeEEchHHhh
Q 017176 208 LTFTLNGGINTVDEVNAALR--KGAHHVMVGRAAYQ 241 (376)
Q Consensus 208 ipVi~nGgI~s~~da~~~l~--~Gad~VmiGRa~l~ 241 (376)
+|||++|||.+.+|+.++.+ .|..++.+|++++.
T Consensus 202 ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~Alf~ 237 (253)
T TIGR02129 202 IPITYAGGAKSIDDLDLVDELSKGKVDLTIGSALDI 237 (253)
T ss_pred CCEEEECCCCCHHHHHHHHHhcCCCCcEEeeehHHH
Confidence 99999999999999998855 36778999999864
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00025 Score=64.18 Aligned_cols=156 Identities=17% Similarity=0.256 Sum_probs=87.9
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCC-CCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCC
Q 017176 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCG-CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV 145 (376)
Q Consensus 67 ~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~g-cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~ 145 (376)
+.+.|..-|+..+.+.++.+.++|+|.|.+... .+... +..+-.++++.+++.++.|+.+.+-.
T Consensus 2 ~~~~~~~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~-------------~~~~~~~~~~~i~~~~~~~~~v~l~~-- 66 (211)
T cd00429 2 IAPSILSADFANLGEELKRLEEAGADWIHIDVMDGHFVP-------------NLTFGPPVVKALRKHTDLPLDVHLMV-- 66 (211)
T ss_pred ceeeeecCCHHHHHHHHHHHHHcCCCEEEEecccCCCCC-------------ccccCHHHHHHHHhhCCCcEEEEeee--
Confidence 456778889999999999999999999998421 11110 00111244555554433444333322
Q ss_pred CCCccHHHHHHHHHHHhhcCCccEEEEccCcc--------ccC--CC---------CC----------------------
Q 017176 146 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA--------LLN--GI---------SP---------------------- 184 (376)
Q Consensus 146 ~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~--------~~~--g~---------~~---------------------- 184 (376)
.+ ..+.+ ..+ .++|+|.++||+... ... +. +.
T Consensus 67 ~d---~~~~~---~~~-~~~g~dgv~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g 139 (211)
T cd00429 67 EN---PERYI---EAF-AKAGADIITFHAEATDHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPG 139 (211)
T ss_pred CC---HHHHH---HHH-HHcCCCEEEECccchhhHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCC
Confidence 11 11111 112 257777777775420 000 00 00
Q ss_pred CCCCCCCcccHHHHHHHHhhC----CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 185 AENRTIPPLKYEYYYALLRDF----PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 185 ~~~~~~~~~~~~~v~~~~~~~----~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
......++...+.+.++++.. +++||++.|||.. +++.++++.|+|+|.+||++...+..
T Consensus 140 ~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~~gad~iivgsai~~~~~~ 203 (211)
T cd00429 140 FGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAEAGADVLVAGSALFGSDDY 203 (211)
T ss_pred CCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHcCCCEEEECHHHhCCCCH
Confidence 000000111122333443322 1489999999985 99999999999999999999987764
|
This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis. |
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00029 Score=65.35 Aligned_cols=140 Identities=14% Similarity=0.156 Sum_probs=88.2
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCC-
Q 017176 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV- 145 (376)
Q Consensus 67 ~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~- 145 (376)
+-+|+.|.- ..+. -++.+.++|++-|-|| +...++ +++.++++...+. .+-+++-++-|.
T Consensus 79 ~~v~vgGGi-r~~e-dv~~~l~~Ga~~viig---------------t~~~~~-~~~~~~~~~~~~~-~iivslD~~~~~~ 139 (233)
T cd04723 79 LGLWVDGGI-RSLE-NAQEWLKRGASRVIVG---------------TETLPS-DDDEDRLAALGEQ-RLVLSLDFRGGQL 139 (233)
T ss_pred CCEEEecCc-CCHH-HHHHHHHcCCCeEEEc---------------ceeccc-hHHHHHHHhcCCC-CeEEEEeccCCee
Confidence 347777642 1222 3333445787776553 334456 8888888887541 233444433331
Q ss_pred ---CCCccHHHHHHHHHHHhhcCCccEEEEccCcc--ccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHH
Q 017176 146 ---DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVD 220 (376)
Q Consensus 146 ---~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~--~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~ 220 (376)
....+..++++. +++. ++.+++..-.. ...| .+++.+.++.+. +++||++.|||.|.+
T Consensus 140 ~~~~~~~~~~~~~~~----~~~~-~~~li~~di~~~G~~~g-----------~~~~~~~~i~~~-~~ipvi~~GGi~s~e 202 (233)
T cd04723 140 LKPTDFIGPEELLRR----LAKW-PEELIVLDIDRVGSGQG-----------PDLELLERLAAR-ADIPVIAAGGVRSVE 202 (233)
T ss_pred ccccCcCCHHHHHHH----HHHh-CCeEEEEEcCccccCCC-----------cCHHHHHHHHHh-cCCCEEEeCCCCCHH
Confidence 112234454432 3456 77777753322 1112 236777888776 489999999999999
Q ss_pred HHHHHHHcCcCeeEEchHHhhC
Q 017176 221 EVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 221 da~~~l~~Gad~VmiGRa~l~~ 242 (376)
|++++++.|+++|.+|++++..
T Consensus 203 di~~l~~~G~~~vivGsal~~g 224 (233)
T cd04723 203 DLELLKKLGASGALVASALHDG 224 (233)
T ss_pred HHHHHHHcCCCEEEEehHHHcC
Confidence 9999999999999999999866
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00043 Score=63.46 Aligned_cols=54 Identities=15% Similarity=0.235 Sum_probs=47.0
Q ss_pred ccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchh
Q 017176 193 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 246 (376)
Q Consensus 193 ~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf 246 (376)
.+.+.+.++++...++|++.-|||+|.++++++++.|||+|.+|+.+..||.++
T Consensus 165 v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~dp~~~ 218 (223)
T TIGR01768 165 VPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEEDVDKA 218 (223)
T ss_pred cCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhCHHHH
Confidence 346677777765448999999999999999999999999999999999999875
|
This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired. |
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00044 Score=63.59 Aligned_cols=151 Identities=17% Similarity=0.286 Sum_probs=95.1
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEE--EecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcc-cCccEEEEecC
Q 017176 67 IVLQIGGSNLDNLAKATELANAYNYDEI--NLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVSVKCRI 143 (376)
Q Consensus 67 ~~vQL~g~~~~~~~~aa~~~~~~G~d~I--eiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~-~~~pv~vKiR~ 143 (376)
+.+.|...|...+.+-.+.++++|+|.+ |+-=|+-+++.+ || -++++++|+. ++.|+.|-+=.
T Consensus 2 i~pSil~ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~t----fg----------~~~i~~i~~~~~~~~~dvHLMv 67 (220)
T PRK08883 2 IAPSILSADFARLGEDVEKVLAAGADVVHFDVMDNHYVPNLT----FG----------APICKALRDYGITAPIDVHLMV 67 (220)
T ss_pred cchhhhhcCHHHHHHHHHHHHHcCCCEEEEecccCcccCccc----cC----------HHHHHHHHHhCCCCCEEEEecc
Confidence 3456777888899999999999998875 554455444322 45 3567777776 57787775443
Q ss_pred CCCCCccHHHHHHHHHHHhhcCCccEEEEccCccc----------cC---------------------------------
Q 017176 144 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL----------LN--------------------------------- 180 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~----------~~--------------------------------- 180 (376)
++ .+..++ . +.++|+|.|++|.-... ..
T Consensus 68 --~~---p~~~i~---~-~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~ 138 (220)
T PRK08883 68 --KP---VDRIIP---D-FAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVN 138 (220)
T ss_pred --CC---HHHHHH---H-HHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEec
Confidence 32 222222 2 23589999999854210 00
Q ss_pred -CCCCCCCCCCCcccHHHHHHHHhhC----CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017176 181 -GISPAENRTIPPLKYEYYYALLRDF----PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 181 -g~~~~~~~~~~~~~~~~v~~~~~~~----~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
|+++. ..-+..++.+.++++.. .++||.+-|||+ .+.+.++.+.|||++.+|++++..+.
T Consensus 139 PGfgGq---~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf~~~d 203 (220)
T PRK08883 139 PGFGGQ---SFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIFGQPD 203 (220)
T ss_pred CCCCCc---eecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHhCCCC
Confidence 11110 00111133444444322 148999999997 99999999999999999999876554
|
|
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00058 Score=64.29 Aligned_cols=168 Identities=17% Similarity=0.149 Sum_probs=97.4
Q ss_pred EEEEecC--CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCC-----Ccccccc--CCHHHHHHHHHHHh-cccCcc
Q 017176 67 IVLQIGG--SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHG-----CFGVSLM--LDPKFVGEAMSVIA-ANTNVP 136 (376)
Q Consensus 67 ~~vQL~g--~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g-----~yG~~l~--~~~~~~~eiv~~v~-~~~~~p 136 (376)
++.=+.. .+.+.+.+.++.+.+.|+|.|||.+ |...-.-.| .+--+|. -+.+.+.++++++| +..++|
T Consensus 14 li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGi--PfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p 91 (258)
T PRK13111 14 LIPYITAGDPDLETSLEIIKALVEAGADIIELGI--PFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIP 91 (258)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECC--CCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Confidence 4444443 3678899999999999999999954 432111000 0011111 24567889999998 556778
Q ss_pred EEEEecC------CCCC----------------CccHHHHHHHHHHHhhcCCccEEE-EccCcc----------------
Q 017176 137 VSVKCRI------GVDD----------------HDSYNQLCDFIYKVSSLSPTRHFI-IHSRKA---------------- 177 (376)
Q Consensus 137 v~vKiR~------g~~~----------------~~~~~~~~~~i~~~~e~~Gvd~I~-vh~r~~---------------- 177 (376)
+.+=.-. |.+. .-.+++.-++ ...+.+.|++.|. +..-+.
T Consensus 92 ~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~-~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY 170 (258)
T PRK13111 92 IVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEEL-RAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVY 170 (258)
T ss_pred EEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHH-HHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEE
Confidence 6432211 1110 0112232222 2334556777666 333221
Q ss_pred --ccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHh
Q 017176 178 --LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240 (376)
Q Consensus 178 --~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l 240 (376)
...|.++.. ...+....+.+..+++ ..++||+..+||.+++++.++++. ||+|.+|++++
T Consensus 171 ~vs~~GvTG~~-~~~~~~~~~~i~~vk~-~~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGSaiv 232 (258)
T PRK13111 171 YVSRAGVTGAR-SADAADLAELVARLKA-HTDLPVAVGFGISTPEQAAAIAAV-ADGVIVGSALV 232 (258)
T ss_pred EEeCCCCCCcc-cCCCccHHHHHHHHHh-cCCCcEEEEcccCCHHHHHHHHHh-CCEEEEcHHHH
Confidence 011222221 1122222446666665 458999999999999999999974 99999999987
|
|
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00028 Score=63.29 Aligned_cols=147 Identities=18% Similarity=0.275 Sum_probs=91.4
Q ss_pred CCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCc-----cccCC-C--CccccccCCHHHHHHHHH---------
Q 017176 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSP-----KVAGH-G--CFGVSLMLDPKFVGEAMS--------- 127 (376)
Q Consensus 65 ~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~-----~v~r~-g--~yG~~l~~~~~~~~eiv~--------- 127 (376)
.|++.=+.+.+++++.+.++.+.+.|++.|++....|.. .+.+. + .-|+...-+.+.+.+.++
T Consensus 4 ~~~~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p 83 (190)
T cd00452 4 QPLVAVLRGDDAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSP 83 (190)
T ss_pred CcEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcC
Confidence 345555677888888888888888899999997654421 00000 0 003333333333333322
Q ss_pred --------HHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHH
Q 017176 128 --------VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 199 (376)
Q Consensus 128 --------~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~ 199 (376)
..++ .+.++. +|.. +.+|..+ +.+.|+|+|-+..... ...+++.
T Consensus 84 ~~~~~~~~~~~~-~~~~~i----~gv~---t~~e~~~-----A~~~Gad~i~~~p~~~---------------~g~~~~~ 135 (190)
T cd00452 84 GLDPEVVKAANR-AGIPLL----PGVA---TPTEIMQ-----ALELGADIVKLFPAEA---------------VGPAYIK 135 (190)
T ss_pred CCCHHHHHHHHH-cCCcEE----CCcC---CHHHHHH-----HHHCCCCEEEEcCCcc---------------cCHHHHH
Confidence 2221 123332 2333 3444322 2358999998743211 1256677
Q ss_pred HHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHh
Q 017176 200 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240 (376)
Q Consensus 200 ~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l 240 (376)
.+...++++|+++.||| +++.+.+.++.|+|+|.+++.+.
T Consensus 136 ~l~~~~~~~p~~a~GGI-~~~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 136 ALKGPFPQVRFMPTGGV-SLDNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred HHHhhCCCCeEEEeCCC-CHHHHHHHHHCCCEEEEEchhcc
Confidence 77766668999999999 99999999999999999999987
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00089 Score=63.19 Aligned_cols=133 Identities=15% Similarity=0.103 Sum_probs=94.9
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEe
Q 017176 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKC 141 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKi 141 (376)
.-|+...+...+++.+.+.++...+.||..+.++.| .+++.-.+++++||+.+ +.++.+..
T Consensus 74 ~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg-----------------~~~~~d~~~v~~vr~~~g~~~~l~vDa 136 (265)
T cd03315 74 RVRVAHMLGLGEPAEVAEEARRALEAGFRTFKLKVG-----------------RDPARDVAVVAALREAVGDDAELRVDA 136 (265)
T ss_pred ceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEEecC-----------------CCHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 345555666667888988888888899999988653 12456678888888876 45666666
Q ss_pred cCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHH
Q 017176 142 RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE 221 (376)
Q Consensus 142 R~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~d 221 (376)
.-+|+ .++.++++ +.+++.|+++|.-- +++.+++..+++.+.. ++||.+.+.+.++++
T Consensus 137 n~~~~----~~~a~~~~-~~l~~~~i~~iEeP----------------~~~~d~~~~~~l~~~~-~ipia~dE~~~~~~~ 194 (265)
T cd03315 137 NRGWT----PKQAIRAL-RALEDLGLDYVEQP----------------LPADDLEGRAALARAT-DTPIMADESAFTPHD 194 (265)
T ss_pred CCCcC----HHHHHHHH-HHHHhcCCCEEECC----------------CCcccHHHHHHHHhhC-CCCEEECCCCCCHHH
Confidence 66665 33444443 34567889887521 1122366667777654 899999999999999
Q ss_pred HHHHHH-cCcCeeEE
Q 017176 222 VNAALR-KGAHHVMV 235 (376)
Q Consensus 222 a~~~l~-~Gad~Vmi 235 (376)
+.++++ ..+|.|++
T Consensus 195 ~~~~i~~~~~d~v~~ 209 (265)
T cd03315 195 AFRELALGAADAVNI 209 (265)
T ss_pred HHHHHHhCCCCEEEE
Confidence 999998 66999987
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions. |
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.001 Score=61.58 Aligned_cols=144 Identities=13% Similarity=0.197 Sum_probs=90.5
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCC-CCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe
Q 017176 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCG-CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 141 (376)
Q Consensus 63 ~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~g-cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 141 (376)
.+.++.+.|.-++|+++.+.+ .++|+|+|-+|.+ +.. +...+.++.+++. +.-+.+-+
T Consensus 64 ~~~~~~vhlmv~~p~d~~~~~---~~~gad~v~vH~~q~~~-----------------d~~~~~~~~i~~~-g~~iGls~ 122 (229)
T PLN02334 64 TDAPLDCHLMVTNPEDYVPDF---AKAGASIFTFHIEQAST-----------------IHLHRLIQQIKSA-GMKAGVVL 122 (229)
T ss_pred CCCcEEEEeccCCHHHHHHHH---HHcCCCEEEEeeccccc-----------------hhHHHHHHHHHHC-CCeEEEEE
Confidence 455678899999999887655 5679999999976 121 1223455555432 33233322
Q ss_pred cCCCCCCccHHHHHHHHHHHhhcCCccEE---EEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCC
Q 017176 142 RIGVDDHDSYNQLCDFIYKVSSLSPTRHF---IIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 218 (376)
Q Consensus 142 R~g~~~~~~~~~~~~~i~~~~e~~Gvd~I---~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s 218 (376)
.. . ... +.+ ..+++..|+|+| .++.++..+ ...+...+.+.++++..+++||.+.||| +
T Consensus 123 ~~--~--t~~-~~~---~~~~~~~~~Dyi~~~~v~pg~~~~---------~~~~~~~~~i~~~~~~~~~~~I~a~GGI-~ 184 (229)
T PLN02334 123 NP--G--TPV-EAV---EPVVEKGLVDMVLVMSVEPGFGGQ---------SFIPSMMDKVRALRKKYPELDIEVDGGV-G 184 (229)
T ss_pred CC--C--CCH-HHH---HHHHhccCCCEEEEEEEecCCCcc---------ccCHHHHHHHHHHHHhCCCCcEEEeCCC-C
Confidence 21 1 112 222 222222239999 455433211 1123335666777665567899999999 8
Q ss_pred HHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 219 VDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 219 ~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
.+++.++++.|+|+|.+|+++...+..
T Consensus 185 ~e~i~~l~~aGad~vvvgsai~~~~d~ 211 (229)
T PLN02334 185 PSTIDKAAEAGANVIVAGSAVFGAPDY 211 (229)
T ss_pred HHHHHHHHHcCCCEEEEChHHhCCCCH
Confidence 999999999999999999999877663
|
|
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.86 E-value=6e-05 Score=68.30 Aligned_cols=79 Identities=20% Similarity=0.256 Sum_probs=63.4
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++...+.|+|-++.---|+...|. ...++++.+..++. .||+..-|||.|.+|+.++|..|||=|.|.++
T Consensus 36 A~~Y~e~GADElvFlDItAs~~gr---------~~~~~vv~r~A~~v-fiPltVGGGI~s~eD~~~ll~aGADKVSINsa 105 (256)
T COG0107 36 AKRYNEEGADELVFLDITASSEGR---------ETMLDVVERVAEQV-FIPLTVGGGIRSVEDARKLLRAGADKVSINSA 105 (256)
T ss_pred HHHHHHcCCCeEEEEecccccccc---------hhHHHHHHHHHhhc-eeeeEecCCcCCHHHHHHHHHcCCCeeeeChh
Confidence 556778999998864444322221 12378888888765 89999999999999999999999999999999
Q ss_pred HhhCCchhh
Q 017176 239 AYQNPWYTL 247 (376)
Q Consensus 239 ~l~~P~lf~ 247 (376)
++.||.+..
T Consensus 106 Av~~p~lI~ 114 (256)
T COG0107 106 AVKDPELIT 114 (256)
T ss_pred HhcChHHHH
Confidence 999999864
|
|
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00046 Score=63.83 Aligned_cols=131 Identities=22% Similarity=0.399 Sum_probs=81.2
Q ss_pred EEEecC--CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC--
Q 017176 68 VLQIGG--SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI-- 143 (376)
Q Consensus 68 ~vQL~g--~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~-- 143 (376)
-+|+.| .+.++.. .+.+.|++.+-+ |.+.. +|+++.++.+..-+ +-+++-.|-
T Consensus 75 pv~~gGGIrs~edv~----~l~~~G~~~viv---------------Gtaa~-~~~~l~~~~~~~g~---ivvslD~~~g~ 131 (228)
T PRK04128 75 KVQVGGGLRTYESIK----DAYEIGVENVII---------------GTKAF-DLEFLEKVTSEFEG---ITVSLDVKGGR 131 (228)
T ss_pred CEEEcCCCCCHHHHH----HHHHCCCCEEEE---------------Cchhc-CHHHHHHHHHHcCC---EEEEEEccCCe
Confidence 356655 3555443 334568888744 34444 78999988887632 333333332
Q ss_pred ----CCCCC--ccHHHHHHHHHHHhhcCCccEEEEcc--CccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecC
Q 017176 144 ----GVDDH--DSYNQLCDFIYKVSSLSPTRHFIIHS--RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 215 (376)
Q Consensus 144 ----g~~~~--~~~~~~~~~i~~~~e~~Gvd~I~vh~--r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGg 215 (376)
||.+. .+..++++.+ ++. +..|.+.. |....+| ++ ++.+..+++|||++||
T Consensus 132 v~~~gw~~~~~~~~~~~~~~~----~~~-~~~ii~t~i~~dGt~~G-------------~d---~l~~~~~~~pviasGG 190 (228)
T PRK04128 132 IAVKGWLEESSIKVEDAYEML----KNY-VNRFIYTSIERDGTLTG-------------IE---EIERFWGDEEFIYAGG 190 (228)
T ss_pred EecCCCeEcCCCCHHHHHHHH----HHH-hCEEEEEeccchhcccC-------------HH---HHHHhcCCCCEEEECC
Confidence 35432 2344554433 334 56677653 3333333 12 2333335899999999
Q ss_pred CCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 216 INTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 216 I~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
|.+.+|+.++.+.|+++|.+|++++..
T Consensus 191 v~~~~Dl~~l~~~g~~gvivg~al~~g 217 (228)
T PRK04128 191 VSSAEDVKKLAEIGFSGVIIGKALYEG 217 (228)
T ss_pred CCCHHHHHHHHHCCCCEEEEEhhhhcC
Confidence 999999999998999999999998654
|
|
| >PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00097 Score=61.67 Aligned_cols=155 Identities=17% Similarity=0.262 Sum_probs=97.2
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHCCCCEE--EecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEec
Q 017176 66 PIVLQIGGSNLDNLAKATELANAYNYDEI--NLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCR 142 (376)
Q Consensus 66 p~~vQL~g~~~~~~~~aa~~~~~~G~d~I--eiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR 142 (376)
.+.+.|...++..+.+..+.++++|+|.+ ||-=|.-+++. .|| .++++++++.. ++++.+|+-
T Consensus 8 ~i~pSi~~~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~----~~G----------~~~v~~lr~~~~~~~lDvHLm 73 (228)
T PTZ00170 8 IIAPSILAADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNL----SFG----------PPVVKSLRKHLPNTFLDCHLM 73 (228)
T ss_pred EEehhHhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCc----CcC----------HHHHHHHHhcCCCCCEEEEEC
Confidence 36677888899999999999999998875 44334333321 235 35677777776 789999987
Q ss_pred CCCCCCccHHHHHHHHHHHhhcCCccEEEEccCcccc-----------CCC------CCC-CCC----CC--Ccc-----
Q 017176 143 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL-----------NGI------SPA-ENR----TI--PPL----- 193 (376)
Q Consensus 143 ~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~-----------~g~------~~~-~~~----~~--~~~----- 193 (376)
. ++ .+..++ .+.++|+|.|++|.-.... .|. .+. +.+ .+ +..
T Consensus 74 ~--~~---p~~~i~----~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~ 144 (228)
T PTZ00170 74 V--SN---PEKWVD----DFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVLV 144 (228)
T ss_pred C--CC---HHHHHH----HHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhHHh
Confidence 4 22 222222 2336899999999652110 110 000 000 00 000
Q ss_pred ---------------cHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017176 194 ---------------KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 194 ---------------~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
..+.+.++++..+.+.|...||| +.+.+..+.+.|+|.+.+||++...+.
T Consensus 145 m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI-~~~ti~~~~~aGad~iVvGsaI~~a~d 209 (228)
T PTZ00170 145 MTVEPGFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGI-NLETIDIAADAGANVIVAGSSIFKAKD 209 (228)
T ss_pred hhcccCCCCcEecHHHHHHHHHHHHhcccCeEEECCCC-CHHHHHHHHHcCCCEEEEchHHhCCCC
Confidence 01233444444445778899999 668888899999999999999877665
|
|
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=6.9e-05 Score=69.31 Aligned_cols=76 Identities=18% Similarity=0.364 Sum_probs=59.0
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017176 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
+++. ++.+++-.......|. +.+++.+.++.+. +++||++.|||+|.+|++++++.|||.|.+|++++
T Consensus 39 ~~~~-~~~l~ivDldga~~g~---------~~n~~~i~~i~~~-~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~- 106 (228)
T PRK04128 39 FSEY-VDKIHVVDLDGAFEGK---------PKNLDVVKNIIRE-TGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF- 106 (228)
T ss_pred HHHh-CCEEEEEECcchhcCC---------cchHHHHHHHHhh-CCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc-
Confidence 4455 8888885444332332 1237788888876 58999999999999999999999999999999999
Q ss_pred CCchhhHhh
Q 017176 242 NPWYTLGHV 250 (376)
Q Consensus 242 ~P~lf~~~~ 250 (376)
||.++ +++
T Consensus 107 ~~~~l-~~~ 114 (228)
T PRK04128 107 DLEFL-EKV 114 (228)
T ss_pred CHHHH-HHH
Confidence 99974 444
|
|
| >PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0016 Score=60.27 Aligned_cols=50 Identities=22% Similarity=0.420 Sum_probs=44.8
Q ss_pred cHHHHHHHHhhCCCC-eEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017176 194 KYEYYYALLRDFPDL-TFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 194 ~~~~v~~~~~~~~~i-pVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
+.+.++++++.. ++ ||+.-|||++.+++++++..|||+|.+|+++..||.
T Consensus 171 ~~e~I~~v~~~~-~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~d~~ 221 (232)
T PRK04169 171 PPEMVKAVKKAL-DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEEDPK 221 (232)
T ss_pred CHHHHHHHHHhc-CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhhCHH
Confidence 467788877754 67 999999999999999999999999999999999987
|
|
| >PRK11750 gltB glutamate synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00018 Score=80.70 Aligned_cols=114 Identities=15% Similarity=0.116 Sum_probs=74.6
Q ss_pred CHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCC--Cccc
Q 017176 118 DPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI--PPLK 194 (376)
Q Consensus 118 ~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~--~~~~ 194 (376)
.++-+.++|..+|+.. +.||+||+-.+. ...+ ++.. ..++|+|.|+|.|... |++.+....+ .-+.
T Consensus 979 SieDL~qlI~~Lk~~~~~~~I~VKl~a~~-~vg~---ia~g----vaka~aD~I~IdG~~G---GTGAap~~~~~~~GlP 1047 (1485)
T PRK11750 979 SIEDLAQLIFDLKQVNPKALVSVKLVSEP-GVGT---IATG----VAKAYADLITISGYDG---GTGASPLTSVKYAGSP 1047 (1485)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEEEccCC-CccH---HHhC----hhhcCCCEEEEeCCCC---CcccccHHHHhhCCcc
Confidence 4677888899998876 679999988641 1122 2111 2368999999988653 2111111000 0111
Q ss_pred HHH-HH----HHHhhC--CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 195 YEY-YY----ALLRDF--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 195 ~~~-v~----~~~~~~--~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
|++ +. .+.+.- -+|.+++.|++.|+.|+..++..|||.|.+||++|.-
T Consensus 1048 ~e~gL~~~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~aLGAd~~~~gt~~lia 1102 (1485)
T PRK11750 1048 WELGLAETHQALVANGLRHKIRLQVDGGLKTGLDVIKAAILGAESFGFGTGPMVA 1102 (1485)
T ss_pred HHHHHHHHHHHHHhcCCCcceEEEEcCCcCCHHHHHHHHHcCCcccccchHHHHH
Confidence 332 22 222221 2589999999999999999999999999999999854
|
|
| >PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0037 Score=60.10 Aligned_cols=205 Identities=14% Similarity=0.163 Sum_probs=113.9
Q ss_pred CCCeecCCcEEEccCCCCChHHH-HHHHHHhCCCcEEEecceeecccc-cccchhhhhhccCCCCCCEEEEecC-CCHHH
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHY-RTLARLISKHAWLYTEMLAAETII-YQQGNLDRFLAFSPEQHPIVLQIGG-SNLDN 78 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~-r~~~~~~Gg~gl~~te~v~~~~~~-~~~~~~~~~~~~~~~~~p~~vQL~g-~~~~~ 78 (376)
|++.+|.+|+++- -+.+.+... +....+.| +.++ |=.+.-..+. ........++ ...+..+..+-.| .+.++
T Consensus 77 i~~~~~~sRl~~G-tg~y~s~~~~~~a~~asg-~e~v-Tva~rr~~~~~~~~~~~~~~~--~~~~~~~lpNTag~~ta~e 151 (326)
T PRK11840 77 VAGKTFSSRLLVG-TGKYKDFEETAAAVEASG-AEIV-TVAVRRVNVSDPGAPMLTDYI--DPKKYTYLPNTAGCYTAEE 151 (326)
T ss_pred ECCEEEecceeEe-cCCCCCHHHHHHHHHHhC-CCEE-EEEEEeecCcCCCcchHHHhh--hhcCCEECccCCCCCCHHH
Confidence 6788999999885 334555544 44445554 6554 3333222211 1112222222 2233334444444 46888
Q ss_pred HHHHHHHHHHC-CCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHH
Q 017176 79 LAKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDF 157 (376)
Q Consensus 79 ~~~aa~~~~~~-G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~ 157 (376)
-+..|+++.++ |-++|-|-. .... -.++.|+....+-.+.+.+. ++-+.+-+. ++ .. .
T Consensus 152 Av~~a~lare~~~~~~iKlEv-------i~e~---~~llpd~~~~v~aa~~L~~~-Gf~v~~yc~---~d---~~-~--- 210 (326)
T PRK11840 152 AVRTLRLAREAGGWDLVKLEV-------LGDA---KTLYPDMVETLKATEILVKE-GFQVMVYCS---DD---PI-A--- 210 (326)
T ss_pred HHHHHHHHHHhcCCCeEEEEE-------cCCC---CCcccCHHHHHHHHHHHHHC-CCEEEEEeC---CC---HH-H---
Confidence 99999999886 457776632 2111 12445555544444443221 333322221 22 22 1
Q ss_pred HHHHhhcCCccEEEEcc-CccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017176 158 IYKVSSLSPTRHFIIHS-RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh~-r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
++.+++.|+. .|-+ ....=+|.+ ..+-+.+..+++. +++|||..+||.+++|+..+++.|||+|.+.
T Consensus 211 -a~~l~~~g~~--avmPl~~pIGsg~g--------v~~p~~i~~~~e~-~~vpVivdAGIg~~sda~~AmelGadgVL~n 278 (326)
T PRK11840 211 -AKRLEDAGAV--AVMPLGAPIGSGLG--------IQNPYTIRLIVEG-ATVPVLVDAGVGTASDAAVAMELGCDGVLMN 278 (326)
T ss_pred -HHHHHhcCCE--EEeeccccccCCCC--------CCCHHHHHHHHHc-CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 3345578883 3433 221111111 1135666676665 5899999999999999999999999999999
Q ss_pred hHHhhCCc
Q 017176 237 RAAYQNPW 244 (376)
Q Consensus 237 Ra~l~~P~ 244 (376)
+|...-++
T Consensus 279 SaIa~a~d 286 (326)
T PRK11840 279 TAIAEAKN 286 (326)
T ss_pred ceeccCCC
Confidence 99874433
|
|
| >cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00055 Score=62.14 Aligned_cols=133 Identities=14% Similarity=0.092 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHH
Q 017176 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLC 155 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~ 155 (376)
.+....-++.+.+.|+|.||+.+- +|..+..+.+.+.+-+.++++.+. .+.+|+-+..... +. +.+
T Consensus 68 ~~~k~~eve~A~~~GAdevdvv~~-----------~g~~~~~~~~~~~~ei~~v~~~~~-g~~lkvI~e~~~l-~~-~~i 133 (203)
T cd00959 68 TEVKVAEAREAIADGADEIDMVIN-----------IGALKSGDYEAVYEEIAAVVEACG-GAPLKVILETGLL-TD-EEI 133 (203)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeec-----------HHHHhCCCHHHHHHHHHHHHHhcC-CCeEEEEEecCCC-CH-HHH
Confidence 344455577788889999999641 233333455666666777776653 3444443322211 22 233
Q ss_pred HHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCee
Q 017176 156 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV 233 (376)
Q Consensus 156 ~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~V 233 (376)
..+.+++.++|+|+|-...+... .| + .+.+...+.+..+ .++||-++|||.|.+++.++++.||+-+
T Consensus 134 ~~a~ria~e~GaD~IKTsTG~~~-~~---a-----t~~~v~~~~~~~~--~~v~ik~aGGikt~~~~l~~~~~g~~ri 200 (203)
T cd00959 134 IKACEIAIEAGADFIKTSTGFGP-GG---A-----TVEDVKLMKEAVG--GRVGVKAAGGIRTLEDALAMIEAGATRI 200 (203)
T ss_pred HHHHHHHHHhCCCEEEcCCCCCC-CC---C-----CHHHHHHHHHHhC--CCceEEEeCCCCCHHHHHHHHHhChhhc
Confidence 34566777899999987643210 11 1 1111334444444 3799999999999999999999998854
|
DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. |
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0025 Score=59.74 Aligned_cols=162 Identities=17% Similarity=0.203 Sum_probs=96.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCC-----Ccccccc--CCHHHHHHHHHHHhcc-cCccEEEEecC--
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHG-----CFGVSLM--LDPKFVGEAMSVIAAN-TNVPVSVKCRI-- 143 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g-----~yG~~l~--~~~~~~~eiv~~v~~~-~~~pv~vKiR~-- 143 (376)
.+++...++++.+.+.|+|.|||-+ |.+.-.-.| ..=-+|- -..+...++++.+++. .++|+.+=.=.
T Consensus 28 P~~e~s~e~i~~L~~~GaD~iELGv--PfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Np 105 (265)
T COG0159 28 PDLETSLEIIKTLVEAGADILELGV--PFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNP 105 (265)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEecC--CCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccH
Confidence 4678999999999999999999954 432111000 0000010 3568899999999954 67887664321
Q ss_pred ----CCCC------------C---c-cHHHHHHHHHHHhhcCCccEEEEccCc-c------------------ccCCCCC
Q 017176 144 ----GVDD------------H---D-SYNQLCDFIYKVSSLSPTRHFIIHSRK-A------------------LLNGISP 184 (376)
Q Consensus 144 ----g~~~------------~---~-~~~~~~~~i~~~~e~~Gvd~I~vh~r~-~------------------~~~g~~~ 184 (376)
|.+. . + .+++ .+.+.+.+++.|++.|-+-.-+ . ...|..+
T Consensus 106 i~~~Gie~F~~~~~~~GvdGlivpDLP~ee-~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~GvTG 184 (265)
T COG0159 106 IFNYGIEKFLRRAKEAGVDGLLVPDLPPEE-SDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRMGVTG 184 (265)
T ss_pred HHHhhHHHHHHHHHHcCCCEEEeCCCChHH-HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEecccccC
Confidence 1111 0 0 1111 1223444556777777653211 0 0113333
Q ss_pred CCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017176 185 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 185 ~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
........ ..+.+..+++ +.++||..-=||++++++.++.+. ||||.+|+++..
T Consensus 185 ~~~~~~~~-~~~~v~~vr~-~~~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSAiV~ 238 (265)
T COG0159 185 ARNPVSAD-VKELVKRVRK-YTDVPVLVGFGISSPEQAAQVAEA-ADGVIVGSAIVK 238 (265)
T ss_pred CCcccchh-HHHHHHHHHH-hcCCCeEEecCcCCHHHHHHHHHh-CCeEEEcHHHHH
Confidence 33221111 2345555544 459999999999999999999998 999999999753
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00014 Score=67.78 Aligned_cols=78 Identities=23% Similarity=0.309 Sum_probs=62.1
Q ss_pred HHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHH
Q 017176 160 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~ 239 (376)
+.+++.|++.|++---.... |. ..+.+.+.++.+.+ ++||.+.|||+|.+|+++++..||+-|.+|.++
T Consensus 39 ~~~~~~g~~~l~ivDLd~~~-g~---------~~n~~~i~~i~~~~-~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~ 107 (241)
T PRK14024 39 LAWQRDGAEWIHLVDLDAAF-GR---------GSNRELLAEVVGKL-DVKVELSGGIRDDESLEAALATGCARVNIGTAA 107 (241)
T ss_pred HHHHHCCCCEEEEEeccccC-CC---------CccHHHHHHHHHHc-CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchH
Confidence 34557999999875433211 21 12367888888875 899999999999999999999999999999999
Q ss_pred hhCCchhhH
Q 017176 240 YQNPWYTLG 248 (376)
Q Consensus 240 l~~P~lf~~ 248 (376)
+.||.++.+
T Consensus 108 l~~p~l~~~ 116 (241)
T PRK14024 108 LENPEWCAR 116 (241)
T ss_pred hCCHHHHHH
Confidence 999998643
|
|
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00018 Score=66.41 Aligned_cols=80 Identities=20% Similarity=0.311 Sum_probs=63.1
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.+++.|++.++|.--.....|. ..+.+.+.++.+.. ++||...|||.+.++++++++.|||.|.+|..
T Consensus 34 a~~~~~~g~~~l~v~dl~~~~~g~---------~~~~~~i~~i~~~~-~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~ 103 (230)
T TIGR00007 34 AKKWEEEGAERIHVVDLDGAKEGG---------PVNLPVIKKIVRET-GVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTA 103 (230)
T ss_pred HHHHHHcCCCEEEEEeCCccccCC---------CCcHHHHHHHHHhc-CCCEEEeCCcCCHHHHHHHHHcCCCEEEEChH
Confidence 344578999999996544322221 12367788887764 89999999999999999999999999999999
Q ss_pred HhhCCchhhH
Q 017176 239 AYQNPWYTLG 248 (376)
Q Consensus 239 ~l~~P~lf~~ 248 (376)
++.||.++.+
T Consensus 104 ~l~d~~~~~~ 113 (230)
T TIGR00007 104 AVENPDLVKE 113 (230)
T ss_pred HhhCHHHHHH
Confidence 9999988643
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00079 Score=62.97 Aligned_cols=198 Identities=13% Similarity=0.082 Sum_probs=119.0
Q ss_pred hHHHHHHH-HHhCCCcEEEecceeecccccccc-hhhhhh-----cc-CCCCCCEEEEecCCCHHHHHHHHHHHHHCCCC
Q 017176 21 DNHYRTLA-RLISKHAWLYTEMLAAETIIYQQG-NLDRFL-----AF-SPEQHPIVLQIGGSNLDNLAKATELANAYNYD 92 (376)
Q Consensus 21 d~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~~~-~~~~~~-----~~-~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d 92 (376)
+...+.+. -+.||++-++.|-....+...... .+-..+ ++ ..-.-|+++|+.-+++. .+...+...|+|
T Consensus 29 e~A~~ea~~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~~~~~p~GVnvL~nd~~---aalaiA~A~ga~ 105 (254)
T PF03437_consen 29 ERAVREAEALEEGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRREVSVPVGVNVLRNDPK---AALAIAAATGAD 105 (254)
T ss_pred HHHHHHHHHHHHCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHHhCCCCEEeeeecCCCH---HHHHHHHHhCCC
Confidence 44444442 355789988888777665433211 111100 01 12367999999987764 344456678999
Q ss_pred EEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCc--cEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEE
Q 017176 93 EINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV--PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHF 170 (376)
Q Consensus 93 ~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~--pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I 170 (376)
+|-+|.=|-.. + +++ |.+..+...+.+.-+.+...+.+ .|.+|...-..+ .++++.++ ...+..++|+|
T Consensus 106 FIRv~~~~g~~-~--~d~--G~~~~~a~e~~r~R~~l~a~v~ilaDV~~kh~~~l~~-~~~~~~~~---~a~~~~~aDav 176 (254)
T PF03437_consen 106 FIRVNVFVGAY-V--TDE--GIIEGCAGELLRYRKRLGADVKILADVHVKHSSPLAT-RDLEEAAK---DAVERGGADAV 176 (254)
T ss_pred EEEecCEEcee-c--ccC--ccccccHHHHHHHHHHcCCCeEEEeeechhhcccCCC-CCHHHHHH---HHHHhcCCCEE
Confidence 99998655442 1 232 33445555555554444333211 122333322222 23554432 33457899999
Q ss_pred EEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 171 IIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 171 ~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
+|+|... |. +...+.+.++++..+ +||+.++|+ |++.+.+.++. |||+.+|+.+-.|-.+
T Consensus 177 iVtG~~T---G~---------~~~~~~l~~vr~~~~-~PVlvGSGv-t~~Ni~~~l~~-ADG~IVGS~~K~~G~~ 236 (254)
T PF03437_consen 177 IVTGKAT---GE---------PPDPEKLKRVREAVP-VPVLVGSGV-TPENIAEYLSY-ADGAIVGSYFKKDGKW 236 (254)
T ss_pred EECCccc---CC---------CCCHHHHHHHHhcCC-CCEEEecCC-CHHHHHHHHHh-CCEEEEeeeeeeCCEe
Confidence 9998652 21 122667777777664 999999999 88999998874 9999999998766664
|
It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. |
| >TIGR00126 deoC deoxyribose-phosphate aldolase | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0007 Score=61.75 Aligned_cols=131 Identities=15% Similarity=0.159 Sum_probs=81.2
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHH
Q 017176 80 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFI 158 (376)
Q Consensus 80 ~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i 158 (376)
..-++.+.+.|+|.||+-+- ||.-...+.+.+.+-+.++++.+ +.|+-|=+-.+.-. -+++. .+
T Consensus 73 ~~E~~~Av~~GAdEiDvv~n-----------~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~---~~ei~-~a 137 (211)
T TIGR00126 73 LYETKEAIKYGADEVDMVIN-----------IGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLT---DEEIR-KA 137 (211)
T ss_pred HHHHHHHHHcCCCEEEeecc-----------hHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCC---HHHHH-HH
Confidence 33445677789999999641 24333456677777777777766 44544423333211 12333 34
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
.+++.++|+|+|-.+.+... .| + .+.+...+.+.++. +++|-+.|||+|.+++.++++.||+-+...
T Consensus 138 ~~ia~eaGADfvKTsTGf~~-~g---a-----t~~dv~~m~~~v~~--~v~IKaaGGirt~~~a~~~i~aGa~riGts 204 (211)
T TIGR00126 138 CEICIDAGADFVKTSTGFGA-GG---A-----TVEDVRLMRNTVGD--TIGVKASGGVRTAEDAIAMIEAGASRIGAS 204 (211)
T ss_pred HHHHHHhCCCEEEeCCCCCC-CC---C-----CHHHHHHHHHHhcc--CCeEEEeCCCCCHHHHHHHHHHhhHHhCcc
Confidence 56677899999987654310 11 1 11112333444432 699999999999999999999988865543
|
Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria. |
| >cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP) | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0031 Score=57.07 Aligned_cols=184 Identities=17% Similarity=0.135 Sum_probs=101.1
Q ss_pred CCCChHHHHHHHHHhCCCcEEEecceeecccccc--cchhhhhhccCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEE
Q 017176 17 MDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ--QGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEI 94 (376)
Q Consensus 17 ~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~--~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~I 94 (376)
+|+++..-..++.+.| ++++ +++....--+. ......+.+..+.. .-.+-++-++. ..+..+.+.+.|+|+|
T Consensus 4 CGi~~~ed~~~a~~~G-vd~i--g~i~~~~s~R~v~~~~a~~l~~~~~~~-~~~V~v~vn~~--~~~i~~ia~~~~~d~V 77 (203)
T cd00405 4 CGITTLEDALAAAEAG-ADAI--GFIFAPKSPRYVSPEQAREIVAALPPF-VKRVGVFVNED--LEEILEIAEELGLDVV 77 (203)
T ss_pred CCCCCHHHHHHHHHcC-CCEE--EEecCCCCCCCCCHHHHHHHHHhCCCC-CcEEEEEeCCC--HHHHHHHHHhcCCCEE
Confidence 5777777766666655 6544 33322211111 11112233322221 12233343331 2334455667899999
Q ss_pred EecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEcc
Q 017176 95 NLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS 174 (376)
Q Consensus 95 eiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~ 174 (376)
.||..-| + +.++.+++..+.++...+.. ...... +. . .....|+|++.+..
T Consensus 78 qlhg~e~-----------------~----~~~~~l~~~~~~~~i~~i~~--~~~~~~-~~----~-~~~~~~aD~il~dt 128 (203)
T cd00405 78 QLHGDES-----------------P----EYCAQLRARLGLPVIKAIRV--KDEEDL-EK----A-AAYAGEVDAILLDS 128 (203)
T ss_pred EECCCCC-----------------H----HHHHHHHhhcCCcEEEEEec--CChhhH-HH----h-hhccccCCEEEEcC
Confidence 9974211 1 22344454445555533443 221111 11 1 12347899998876
Q ss_pred CccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcC-cCeeEEchHHhhCCch
Q 017176 175 RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAAYQNPWY 245 (376)
Q Consensus 175 r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~G-ad~VmiGRa~l~~P~l 245 (376)
.+....|-++ .+..|+.+.++. .++|+++.||| |++.+.++++.+ +++|.+.+++...|-.
T Consensus 129 ~~~~~~Gg~g------~~~~~~~l~~~~---~~~PvilaGGI-~~~Nv~~~i~~~~~~gvdv~S~ie~~pg~ 190 (203)
T cd00405 129 KSGGGGGGTG------KTFDWSLLRGLA---SRKPVILAGGL-TPDNVAEAIRLVRPYGVDVSSGVETSPGI 190 (203)
T ss_pred CCCCCCCCCc------ceEChHHhhccc---cCCCEEEECCC-ChHHHHHHHHhcCCCEEEcCCcccCCCCC
Confidence 5542211111 234577776554 37999999999 999999999976 9999999999887764
|
Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes. |
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00082 Score=62.97 Aligned_cols=150 Identities=23% Similarity=0.287 Sum_probs=82.5
Q ss_pred HHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC------------CCC
Q 017176 79 LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI------------GVD 146 (376)
Q Consensus 79 ~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~------------g~~ 146 (376)
..+.|+..+++|+++|-+.. ....|||++ +-+..+++.+++|+..|==+ |-|
T Consensus 70 ~~~~a~~y~~~GA~aiSVlT--------e~~~F~Gs~--------~dL~~v~~~~~~PvL~KDFIid~~QI~eA~~~GAD 133 (254)
T PF00218_consen 70 PAEIAKAYEEAGAAAISVLT--------EPKFFGGSL--------EDLRAVRKAVDLPVLRKDFIIDPYQIYEARAAGAD 133 (254)
T ss_dssp HHHHHHHHHHTT-SEEEEE----------SCCCHHHH--------HHHHHHHHHSSS-EEEES---SHHHHHHHHHTT-S
T ss_pred HHHHHHHHHhcCCCEEEEEC--------CCCCCCCCH--------HHHHHHHHHhCCCcccccCCCCHHHHHHHHHcCCC
Confidence 34566677789999998863 234577765 34666777788999887211 111
Q ss_pred CC------ccHHHHHHHHHHHhhcCCccEEE-EccCcc----ccCCC--CCCCCCCCC--cccHHHHHHHHhhCC-CCeE
Q 017176 147 DH------DSYNQLCDFIYKVSSLSPTRHFI-IHSRKA----LLNGI--SPAENRTIP--PLKYEYYYALLRDFP-DLTF 210 (376)
Q Consensus 147 ~~------~~~~~~~~~i~~~~e~~Gvd~I~-vh~r~~----~~~g~--~~~~~~~~~--~~~~~~v~~~~~~~~-~ipV 210 (376)
-. -+-+.+.+ +...+...|.+.+. ||...- ...|. -+-+++... ..+.....++....| ++.+
T Consensus 134 aVLLI~~~L~~~~l~~-l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRdL~tf~vd~~~~~~l~~~ip~~~~~ 212 (254)
T PF00218_consen 134 AVLLIAAILSDDQLEE-LLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRDLKTFEVDLNRTEELAPLIPKDVIV 212 (254)
T ss_dssp EEEEEGGGSGHHHHHH-HHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBCTTTCCBHTHHHHHHHCHSHTTSEE
T ss_pred EeehhHHhCCHHHHHH-HHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCccccCcccChHHHHHHHhhCccceeE
Confidence 00 00111111 12233345555432 554321 00010 011222222 223344455555444 5789
Q ss_pred EEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 211 TLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 211 i~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
|+-+||.+++|+..+...|+|+|.||++++..|..
T Consensus 213 iseSGI~~~~d~~~l~~~G~davLVGe~lm~~~d~ 247 (254)
T PF00218_consen 213 ISESGIKTPEDARRLARAGADAVLVGEALMRSPDP 247 (254)
T ss_dssp EEESS-SSHHHHHHHCTTT-SEEEESHHHHTSSSH
T ss_pred EeecCCCCHHHHHHHHHCCCCEEEECHHHhCCCCH
Confidence 99999999999999999999999999999999985
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0065 Score=57.93 Aligned_cols=153 Identities=12% Similarity=0.208 Sum_probs=92.0
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe-c
Q 017176 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC-R 142 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi-R 142 (376)
..|++++|=+... + +.++.+.+.||+.|.+-.. ......+.+...++++-.++ .++|+-..+ .
T Consensus 74 ~vpv~lHlDH~~~--~-e~i~~Al~~G~tsVm~d~s------------~~~~~eni~~t~~v~~~a~~-~gv~veaE~gh 137 (281)
T PRK06806 74 KVPVAVHFDHGMT--F-EKIKEALEIGFTSVMFDGS------------HLPLEENIQKTKEIVELAKQ-YGATVEAEIGR 137 (281)
T ss_pred CCCEEEECCCCCC--H-HHHHHHHHcCCCEEEEcCC------------CCCHHHHHHHHHHHHHHHHH-cCCeEEEEeee
Confidence 4466666654321 1 2334455567777766321 11122333444444444332 355654432 3
Q ss_pred CCCCC---------CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEe
Q 017176 143 IGVDD---------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN 213 (376)
Q Consensus 143 ~g~~~---------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~n 213 (376)
+|-.+ ..+.++..++ .++.|+|+|.+.-++..-.. + .-+++.++.+.++.+.. ++|+++-
T Consensus 138 lG~~d~~~~~~g~s~t~~eea~~f----~~~tg~DyLAvaiG~~hg~~--~----~~~~l~~~~L~~i~~~~-~iPlV~h 206 (281)
T PRK06806 138 VGGSEDGSEDIEMLLTSTTEAKRF----AEETDVDALAVAIGNAHGMY--N----GDPNLRFDRLQEINDVV-HIPLVLH 206 (281)
T ss_pred ECCccCCcccccceeCCHHHHHHH----HHhhCCCEEEEccCCCCCCC--C----CCCccCHHHHHHHHHhc-CCCEEEE
Confidence 33111 1234454433 34579999999665542111 1 12456789999998764 8999999
Q ss_pred c--CCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017176 214 G--GINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 214 G--gI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
| || +.+++.++++.|++.|-+.+++..+|.
T Consensus 207 G~SGI-~~e~~~~~i~~G~~kinv~T~i~~a~~ 238 (281)
T PRK06806 207 GGSGI-SPEDFKKCIQHGIRKINVATATFNSVI 238 (281)
T ss_pred CCCCC-CHHHHHHHHHcCCcEEEEhHHHHHHHH
Confidence 9 99 678899999999999999999998654
|
|
| >PRK07226 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00098 Score=63.12 Aligned_cols=136 Identities=17% Similarity=0.177 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcc---cCccEEEEecC-CC--CCCcc
Q 017176 77 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN---TNVPVSVKCRI-GV--DDHDS 150 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~---~~~pv~vKiR~-g~--~~~~~ 150 (376)
+.+...++.+.+.|+|.|++.. + +|+. ..+.+.+.+.++++. .++|+.+=... |. +...+
T Consensus 93 ~~~~~~ve~A~~~Gad~v~~~~-----~------~g~~---~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~ 158 (267)
T PRK07226 93 KVLVGTVEEAIKLGADAVSVHV-----N------VGSE---TEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYD 158 (267)
T ss_pred ceeeecHHHHHHcCCCEEEEEE-----e------cCCh---hHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCcc
Confidence 3445556778888999998853 1 1110 012233334444332 47787663111 11 11112
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCC--CHHHHHHHH--
Q 017176 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN--TVDEVNAAL-- 226 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~--s~~da~~~l-- 226 (376)
.++ +....+++.+.|+|+|-.+ +.+ ..+.+.++.+.. ++||++.|||. |.+++.+++
T Consensus 159 ~~~-i~~a~~~a~e~GAD~vKt~-----~~~------------~~~~l~~~~~~~-~ipV~a~GGi~~~~~~~~l~~v~~ 219 (267)
T PRK07226 159 PEV-VAHAARVAAELGADIVKTN-----YTG------------DPESFREVVEGC-PVPVVIAGGPKTDTDREFLEMVRD 219 (267)
T ss_pred HHH-HHHHHHHHHHHCCCEEeeC-----CCC------------CHHHHHHHHHhC-CCCEEEEeCCCCCCHHHHHHHHHH
Confidence 222 2223455567999999654 111 145666766543 79999999999 888888776
Q ss_pred --HcCcCeeEEchHHhhCCch
Q 017176 227 --RKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 227 --~~Gad~VmiGRa~l~~P~l 245 (376)
+.||+|+.+||.++..|..
T Consensus 220 ~~~aGA~Gis~gr~i~~~~~p 240 (267)
T PRK07226 220 AMEAGAAGVAVGRNVFQHEDP 240 (267)
T ss_pred HHHcCCcEEehhhhhhcCCCH
Confidence 6899999999999988773
|
|
| >PRK08005 epimerase; Validated | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0047 Score=56.30 Aligned_cols=154 Identities=17% Similarity=0.234 Sum_probs=94.3
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEE--EecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCC
Q 017176 67 IVLQIGGSNLDNLAKATELANAYNYDEI--NLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG 144 (376)
Q Consensus 67 ~~vQL~g~~~~~~~~aa~~~~~~G~d~I--eiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g 144 (376)
+.++|...|+..+.+-.+.++++|+|.+ |+-=|.-+++. .|| -++++++++.++.|+.|-+=.
T Consensus 3 i~pSil~ad~~~l~~el~~l~~~g~d~lHiDvMDG~FVPN~----tfG----------~~~i~~l~~~t~~~~DvHLMv- 67 (210)
T PRK08005 3 LHPSLASADPLRYAEALTALHDAPLGSLHLDIEDTSFINNI----TFG----------MKTIQAVAQQTRHPLSFHLMV- 67 (210)
T ss_pred EEeehhhCCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCcc----ccC----------HHHHHHHHhcCCCCeEEEecc-
Confidence 5677888999999999999999998875 44334333321 144 356777777777787665443
Q ss_pred CCCCccHHHHHHHHHHHhhcCCccEEEEccCcc-c---------cCC----C--CCCC----------------------
Q 017176 145 VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-L---------LNG----I--SPAE---------------------- 186 (376)
Q Consensus 145 ~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~-~---------~~g----~--~~~~---------------------- 186 (376)
.+ .+..+ ... .++|+|.|++|.-.. . ..| . ++..
T Consensus 68 -~~---P~~~i---~~~-~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV~P 139 (210)
T PRK08005 68 -SS---PQRWL---PWL-AAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEP 139 (210)
T ss_pred -CC---HHHHH---HHH-HHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEecC
Confidence 22 22222 222 358999999985421 0 001 0 0000
Q ss_pred ---CCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017176 187 ---NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 187 ---~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
+...-+..++-++++++...+..|-..||| +.+.+..+.+.|||.+.+|+++..++.
T Consensus 140 Gf~GQ~f~~~~~~KI~~l~~~~~~~~I~VDGGI-~~~~i~~l~~aGad~~V~GsaiF~~~d 199 (210)
T PRK08005 140 DGRGQQFIAAMCEKVSQSREHFPAAECWADGGI-TLRAARLLAAAGAQHLVIGRALFTTAN 199 (210)
T ss_pred CCccceecHHHHHHHHHHHHhcccCCEEEECCC-CHHHHHHHHHCCCCEEEEChHhhCCCC
Confidence 000000112334444443334568899999 588888999999999999999886665
|
|
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0049 Score=56.11 Aligned_cols=152 Identities=17% Similarity=0.206 Sum_probs=88.1
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccc-cC--CCCc------cccccCCHHHHHHHHHHHhc---
Q 017176 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKV-AG--HGCF------GVSLMLDPKFVGEAMSVIAA--- 131 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v-~r--~g~y------G~~l~~~~~~~~eiv~~v~~--- 131 (376)
..+++.=+-+.++++..+.++.+.+.|+..||+-+-.|...- .+ +..| |+.-.-+.+.+...+++=.+
T Consensus 9 ~~~~~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fiv 88 (206)
T PRK09140 9 KLPLIAILRGITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIV 88 (206)
T ss_pred hCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEE
Confidence 345666677889999999999999999999999764442100 00 0001 11112222222222221000
Q ss_pred -------------ccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHH
Q 017176 132 -------------NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY 198 (376)
Q Consensus 132 -------------~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v 198 (376)
..+.++.. | ..+.+|+.. +.+.|+|+|.+... .....+++
T Consensus 89 sp~~~~~v~~~~~~~~~~~~~----G---~~t~~E~~~-----A~~~Gad~vk~Fpa---------------~~~G~~~l 141 (206)
T PRK09140 89 TPNTDPEVIRRAVALGMVVMP----G---VATPTEAFA-----ALRAGAQALKLFPA---------------SQLGPAGI 141 (206)
T ss_pred CCCCCHHHHHHHHHCCCcEEc----c---cCCHHHHHH-----HHHcCCCEEEECCC---------------CCCCHHHH
Confidence 00111111 1 012222211 12456666665221 11236778
Q ss_pred HHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017176 199 YALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 199 ~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
+++++.++ ++|+++.||| +.+.+.+.+++|+|+|.+++++....
T Consensus 142 ~~l~~~~~~~ipvvaiGGI-~~~n~~~~~~aGa~~vav~s~l~~~~ 186 (206)
T PRK09140 142 KALRAVLPPDVPVFAVGGV-TPENLAPYLAAGAAGFGLGSALYRPG 186 (206)
T ss_pred HHHHhhcCCCCeEEEECCC-CHHHHHHHHHCCCeEEEEehHhcccc
Confidence 88877775 6999999999 89999999999999999999997643
|
|
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0024 Score=57.22 Aligned_cols=148 Identities=16% Similarity=0.199 Sum_probs=90.2
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCc-----------cccCCCCccccccCCHHHHHHHHHH----
Q 017176 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSP-----------KVAGHGCFGVSLMLDPKFVGEAMSV---- 128 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~-----------~v~r~g~yG~~l~~~~~~~~eiv~~---- 128 (376)
..+++.=+.+.++++..+.++.+.+.|++.|++..-.+.. ..+..+ ++.++.. +.+...++.
T Consensus 11 ~~~~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g--~gtvl~~-d~~~~A~~~gAdg 87 (187)
T PRK07455 11 QHRAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKLPECIIG--TGTILTL-EDLEEAIAAGAQF 87 (187)
T ss_pred hCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEe--EEEEEcH-HHHHHHHHcCCCE
Confidence 3455555777888888888888888888888886543321 001111 1222221 333222221
Q ss_pred ------------HhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHH
Q 017176 129 ------------IAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE 196 (376)
Q Consensus 129 ------------v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~ 196 (376)
+++..+++. -+|. .+..|+.+ +.+.|+|+|-+..... ....+
T Consensus 88 v~~p~~~~~~~~~~~~~~~~~----i~G~---~t~~e~~~-----A~~~Gadyv~~Fpt~~--------------~~G~~ 141 (187)
T PRK07455 88 CFTPHVDPELIEAAVAQDIPI----IPGA---LTPTEIVT-----AWQAGASCVKVFPVQA--------------VGGAD 141 (187)
T ss_pred EECCCCCHHHHHHHHHcCCCE----EcCc---CCHHHHHH-----HHHCCCCEEEECcCCc--------------ccCHH
Confidence 011112221 1341 33444432 2358999999844210 11257
Q ss_pred HHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017176 197 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 197 ~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
++++++..++++|+++.||| +++++.+.++.|+++|.++++++.
T Consensus 142 ~l~~~~~~~~~ipvvaiGGI-~~~n~~~~l~aGa~~vav~s~i~~ 185 (187)
T PRK07455 142 YIKSLQGPLGHIPLIPTGGV-TLENAQAFIQAGAIAVGLSGQLFP 185 (187)
T ss_pred HHHHHHhhCCCCcEEEeCCC-CHHHHHHHHHCCCeEEEEehhccc
Confidence 78888877778999999999 889999999999999999998764
|
|
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00024 Score=65.98 Aligned_cols=82 Identities=16% Similarity=0.176 Sum_probs=62.7
Q ss_pred HHHhhc-CCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEch
Q 017176 159 YKVSSL-SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 159 ~~~~e~-~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGR 237 (376)
++.+.+ .|++.|+|--=.....| .+.+.+.+.++.+. +++||..-|||+|.+|++++++.||+-|.+|+
T Consensus 37 a~~~~~~~Ga~~l~ivDLd~a~~~---------~~~n~~~I~~i~~~-~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt 106 (234)
T PRK13587 37 IAYYSQFECVNRIHIVDLIGAKAQ---------HAREFDYIKSLRRL-TTKDIEVGGGIRTKSQIMDYFAAGINYCIVGT 106 (234)
T ss_pred HHHHHhccCCCEEEEEECcccccC---------CcchHHHHHHHHhh-cCCeEEEcCCcCCHHHHHHHHHCCCCEEEECc
Confidence 334455 69999988533222112 12247788888875 48999999999999999999999999999999
Q ss_pred HHhhCCchhhHhhh
Q 017176 238 AAYQNPWYTLGHVD 251 (376)
Q Consensus 238 a~l~~P~lf~~~~~ 251 (376)
.++.||.++ +++.
T Consensus 107 ~a~~~~~~l-~~~~ 119 (234)
T PRK13587 107 KGIQDTDWL-KEMA 119 (234)
T ss_pred hHhcCHHHH-HHHH
Confidence 999999975 4443
|
|
| >PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0082 Score=59.72 Aligned_cols=141 Identities=17% Similarity=0.196 Sum_probs=93.4
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC
Q 017176 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 143 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~ 143 (376)
+.++.+-|--.|+..+. ++.+.++|+|.+-+|+..+ .+.+.+.++++++. ++-+.+- -+
T Consensus 226 ~~~I~~DLK~~Di~~~v--v~~~a~aGAD~vTVH~ea~-----------------~~ti~~ai~~akk~-GikvgVD-~l 284 (391)
T PRK13307 226 DAFIVADLKTLDTGNLE--ARMAADATADAVVISGLAP-----------------ISTIEKAIHEAQKT-GIYSILD-ML 284 (391)
T ss_pred CCeEEEEecccChhhHH--HHHHHhcCCCEEEEeccCC-----------------HHHHHHHHHHHHHc-CCEEEEE-Ec
Confidence 56799999988988775 6677899999999986322 12355566666653 4333331 11
Q ss_pred CCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHH
Q 017176 144 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 223 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~ 223 (376)
+. .+..+.+ ..+ ..++|.+.+|...... +. . ..|+.+.++++...+++|...|||. .+++.
T Consensus 285 np---~tp~e~i---~~l--~~~vD~Vllht~vdp~-~~--------~-~~~~kI~~ikk~~~~~~I~VdGGI~-~eti~ 345 (391)
T PRK13307 285 NV---EDPVKLL---ESL--KVKPDVVELHRGIDEE-GT--------E-HAWGNIKEIKKAGGKILVAVAGGVR-VENVE 345 (391)
T ss_pred CC---CCHHHHH---HHh--hCCCCEEEEccccCCC-cc--------c-chHHHHHHHHHhCCCCcEEEECCcC-HHHHH
Confidence 11 1222222 222 4689999999532111 11 0 1256666666544578999999997 89999
Q ss_pred HHHHcCcCeeEEchHHhhCCc
Q 017176 224 AALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 224 ~~l~~Gad~VmiGRa~l~~P~ 244 (376)
++++.|||.+.+||++...+.
T Consensus 346 ~l~~aGADivVVGsaIf~a~D 366 (391)
T PRK13307 346 EALKAGADILVVGRAITKSKD 366 (391)
T ss_pred HHHHcCCCEEEEeHHHhCCCC
Confidence 999999999999999876555
|
|
| >PRK05581 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0014 Score=59.80 Aligned_cols=157 Identities=18% Similarity=0.304 Sum_probs=86.1
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCC
Q 017176 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD 146 (376)
Q Consensus 67 ~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~ 146 (376)
+.+.|...|+..+.+.++.+.+.|+|.|.+-..- +. +..+..+..+.++++++.+..++.+-+-. .
T Consensus 6 ~~~s~~~~~~~~~~~~~~~~~~~G~~~i~l~~~d--------~~----~~~~~~~~~~~~~~i~~~~~~~~~v~l~v--~ 71 (220)
T PRK05581 6 IAPSILSADFARLGEEVKAVEAAGADWIHVDVMD--------GH----FVPNLTIGPPVVEAIRKVTKLPLDVHLMV--E 71 (220)
T ss_pred EEcchhcCCHHHHHHHHHHHHHcCCCEEEEeCcc--------CC----cCCCcCcCHHHHHHHHhcCCCcEEEEeee--C
Confidence 6677888899999999999999999999994210 11 10111123455566655443333332222 1
Q ss_pred CCccHHHHHHHHHHHhhcCCccEEEEccCccc--------c--CCC---------CC----------CC-----------
Q 017176 147 DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL--------L--NGI---------SP----------AE----------- 186 (376)
Q Consensus 147 ~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~--------~--~g~---------~~----------~~----------- 186 (376)
+ ..+. +..+ .++|+|.++||+.... . .|. +. .+
T Consensus 72 d---~~~~---i~~~-~~~g~d~v~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~ 144 (220)
T PRK05581 72 N---PDRY---VPDF-AKAGADIITFHVEASEHIHRLLQLIKSAGIKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGF 144 (220)
T ss_pred C---HHHH---HHHH-HHcCCCEEEEeeccchhHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCC
Confidence 1 1111 1222 2578888887764200 0 000 00 00
Q ss_pred -CCCCCcccHHHHHHHHhhCC--C--CeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 187 -NRTIPPLKYEYYYALLRDFP--D--LTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 187 -~~~~~~~~~~~v~~~~~~~~--~--ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
.....+...+.+.++++... + .+|...|||+. +++.++++.|+|+|.+|++++.+|..
T Consensus 145 tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~l~~~GaD~vvvgSai~~~~d~ 207 (220)
T PRK05581 145 GGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKECAEAGADVFVAGSAVFGAPDY 207 (220)
T ss_pred CcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHcCCCEEEEChhhhCCCCH
Confidence 00000001122333332211 1 33557899977 89999998999999999999987774
|
|
| >COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0023 Score=58.11 Aligned_cols=154 Identities=18% Similarity=0.287 Sum_probs=99.3
Q ss_pred CCEEEEecCCCHHHHHHHHHHHHHCCCCEEEec--CCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017176 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLN--CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 65 ~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN--~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
.++..+|...+...+.+-.+.++++|+|.|-+- =|.-+++.+ +| -.+++++++.+..|+.|-+-
T Consensus 4 ~~iapSILsaD~~~l~~el~~~~~agad~iH~DVMDghFVPNiT----fG----------p~~v~~l~~~t~~p~DvHLM 69 (220)
T COG0036 4 MKIAPSILSADFARLGEELKALEAAGADLIHIDVMDGHFVPNIT----FG----------PPVVKALRKITDLPLDVHLM 69 (220)
T ss_pred ceeeeehhhCCHhHHHHHHHHHHHcCCCEEEEeccCCCcCCCcc----cC----------HHHHHHHhhcCCCceEEEEe
Confidence 457888999999999999999999999976553 333333322 45 36788888888888888655
Q ss_pred CCCCCCccHHHHHHHHHHHhhcCCccEEEEccCcc-----------c---cC----------------------------
Q 017176 143 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-----------L---LN---------------------------- 180 (376)
Q Consensus 143 ~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~-----------~---~~---------------------------- 180 (376)
. .+ .+..++. +.++|+|+|++|.-.. . ..
T Consensus 70 V--~~---p~~~i~~----fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsV 140 (220)
T COG0036 70 V--EN---PDRYIEA----FAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSV 140 (220)
T ss_pred c--CC---HHHHHHH----HHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeE
Confidence 4 22 2233322 2368999999985310 0 00
Q ss_pred --CCCCCCCCCCCcccHHHHHHHHhhCC---CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 181 --GISPAENRTIPPLKYEYYYALLRDFP---DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 181 --g~~~~~~~~~~~~~~~~v~~~~~~~~---~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
|+++. ..+ +...+-++++++... ++-|-..||| +.+.+..+.+.|||.+..|+++..++++
T Consensus 141 nPGfgGQ--~Fi-~~~l~Ki~~lr~~~~~~~~~~IeVDGGI-~~~t~~~~~~AGad~~VaGSalF~~~d~ 206 (220)
T COG0036 141 NPGFGGQ--KFI-PEVLEKIRELRAMIDERLDILIEVDGGI-NLETIKQLAAAGADVFVAGSALFGADDY 206 (220)
T ss_pred CCCCccc--ccC-HHHHHHHHHHHHHhcccCCeEEEEeCCc-CHHHHHHHHHcCCCEEEEEEEEeCCccH
Confidence 11110 000 111233444433322 4557788999 7888888888999999999998888873
|
|
| >COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0071 Score=55.34 Aligned_cols=196 Identities=15% Similarity=0.129 Sum_probs=124.1
Q ss_pred hHHHHHHH-HHhCCCcEEEecceeecccccccch-hhh-hh----c-cCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCC
Q 017176 21 DNHYRTLA-RLISKHAWLYTEMLAAETIIYQQGN-LDR-FL----A-FSPEQHPIVLQIGGSNLDNLAKATELANAYNYD 92 (376)
Q Consensus 21 d~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~~~~-~~~-~~----~-~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d 92 (376)
|...+.+. -+-||++-++.|..-..++.....+ +-. +. + ..+-..|+++++.-|++- .|..++...|.|
T Consensus 34 d~A~~dA~~leegG~DavivEN~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~iPvGvNVLrNd~v---aA~~IA~a~gA~ 110 (263)
T COG0434 34 DRAVRDAAALEEGGVDAVIVENYGDAPFLKDVGPETVAAMAVIVREVVREVSIPVGVNVLRNDAV---AALAIAYAVGAD 110 (263)
T ss_pred HHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCChHHHHHHHHHHHHHHHhccccceeeeeccccH---HHHHHHHhcCCC
Confidence 44555553 3668899999998777665442211 111 11 1 134578999999988763 455667778999
Q ss_pred EEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCc--cEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEE
Q 017176 93 EINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV--PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHF 170 (376)
Q Consensus 93 ~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~--pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I 170 (376)
+|-+|.-|-.. -+++ | -++.+...+.+.-..+...+.+ .+-||...-..+ .++++.+ ...++..++|++
T Consensus 111 FIRVN~~tg~~---~tdq-G-iieg~A~e~~r~r~~L~~~v~vlADv~VKHa~~l~~-~~~~~~v---~dtver~~aDaV 181 (263)
T COG0434 111 FIRVNVLTGAY---ATDQ-G-IIEGNAAELARYRARLGSRVKVLADVHVKHAVHLGN-RSLEEAV---KDTVERGLADAV 181 (263)
T ss_pred EEEEEeeeceE---eccc-c-eecchHHHHHHHHHhccCCcEEEeecchhcccccCC-cCHHHHH---HHHHHccCCCEE
Confidence 99999765542 1343 3 4555666666666665533221 344554433332 2455543 334567889999
Q ss_pred EEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017176 171 IIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 171 ~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
+++|.+. |. +.+.+.+..+++. .++||++..|+ +++.+.+.++. |||+.+|+.+=.+-
T Consensus 182 I~tG~~T---G~---------~~d~~el~~a~~~-~~~pvlvGSGv-~~eN~~~~l~~-adG~IvgT~lK~~G 239 (263)
T COG0434 182 IVTGSRT---GS---------PPDLEELKLAKEA-VDTPVLVGSGV-NPENIEELLKI-ADGVIVGTSLKKGG 239 (263)
T ss_pred EEecccC---CC---------CCCHHHHHHHHhc-cCCCEEEecCC-CHHHHHHHHHH-cCceEEEEEEccCC
Confidence 9998753 22 1235666666554 47999999998 78899999986 99999999776554
|
|
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.013 Score=54.73 Aligned_cols=207 Identities=16% Similarity=0.124 Sum_probs=123.8
Q ss_pred CcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeec-ccccccc---hhhhhhc-----cCCCCCCEEEEec--CCCHH
Q 017176 9 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAE-TIIYQQG---NLDRFLA-----FSPEQHPIVLQIG--GSNLD 77 (376)
Q Consensus 9 nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~-~~~~~~~---~~~~~~~-----~~~~~~p~~vQL~--g~~~~ 77 (376)
+..+++| ++-|....+++...| ...+++.-.... .....+. ....++. ......|+++-+= -.+++
T Consensus 8 ~~~i~~~--~~~D~~sA~~~e~~G-~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~ 84 (243)
T cd00377 8 GGPLVLP--GAWDALSARLAERAG-FKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNAL 84 (243)
T ss_pred CCcEEec--CCCCHHHHHHHHHcC-CCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHH
Confidence 3444544 667888888877776 776665533322 2211111 1111111 1234567776652 12668
Q ss_pred HHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCc--cEEEEecCCC--CCCccHHH
Q 017176 78 NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV--PVSVKCRIGV--DDHDSYNQ 153 (376)
Q Consensus 78 ~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~--pv~vKiR~g~--~~~~~~~~ 153 (376)
.+.+.++++.++|+++|.|.-+...++ .+.+|+.-+-.++...+.++++++..+. ++.|=-|... .....+++
T Consensus 85 ~~~~~v~~~~~~G~~gv~iED~~~~k~---~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~e 161 (243)
T cd00377 85 NVARTVRELEEAGAAGIHIEDQVGPKK---CGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDE 161 (243)
T ss_pred HHHHHHHHHHHcCCEEEEEecCCCCcc---ccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHH
Confidence 888899999999999999976654322 3334555556778888888888776532 4555455321 11134666
Q ss_pred HHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCC-HHHHHHHHHcCcCe
Q 017176 154 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT-VDEVNAALRKGAHH 232 (376)
Q Consensus 154 ~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s-~~da~~~l~~Gad~ 232 (376)
.++. ++.+.++|+|.+-+++-. +.+.+.++.++ +++||+.+-.=.. .-...++-+.|+..
T Consensus 162 ai~R-a~ay~~AGAD~v~v~~~~-----------------~~~~~~~~~~~-~~~Pl~~~~~~~~~~~~~~~l~~lG~~~ 222 (243)
T cd00377 162 AIER-AKAYAEAGADGIFVEGLK-----------------DPEEIRAFAEA-PDVPLNVNMTPGGNLLTVAELAELGVRR 222 (243)
T ss_pred HHHH-HHHHHHcCCCEEEeCCCC-----------------CHHHHHHHHhc-CCCCEEEEecCCCCCCCHHHHHHCCCeE
Confidence 6665 345678999999998753 14667777776 4789887632111 12344455579999
Q ss_pred eEEchHHh
Q 017176 233 VMVGRAAY 240 (376)
Q Consensus 233 VmiGRa~l 240 (376)
|.+|-.++
T Consensus 223 v~~~~~~~ 230 (243)
T cd00377 223 VSYGLALL 230 (243)
T ss_pred EEEChHHH
Confidence 99887654
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0015 Score=59.16 Aligned_cols=155 Identities=14% Similarity=0.151 Sum_probs=100.7
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCcc-----ccC---CCCccccccCCHHHHHHHHHHHhcccCc
Q 017176 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPK-----VAG---HGCFGVSLMLDPKFVGEAMSVIAANTNV 135 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~-----v~r---~g~yG~~l~~~~~~~~eiv~~v~~~~~~ 135 (376)
..+++.=|.+.++++..+.++.+.+.|++.|||.+-.|... ..+ .-..|+.-.-+++.+.+.+++ +-
T Consensus 7 ~~~liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~a-----GA 81 (204)
T TIGR01182 7 EAKIVPVIRIDDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDA-----GA 81 (204)
T ss_pred hCCEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHc-----CC
Confidence 44566667889999999999999999999999998766420 000 111244444555555554443 22
Q ss_pred cEEEEecCCCCC----------------CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHH
Q 017176 136 PVSVKCRIGVDD----------------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 199 (376)
Q Consensus 136 pv~vKiR~g~~~----------------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~ 199 (376)
.+. ++++++. ..+..|+.. . .++|++.+-+.+.... +| ..+++
T Consensus 82 ~Fi--vsP~~~~~v~~~~~~~~i~~iPG~~TptEi~~----A-~~~Ga~~vKlFPA~~~-GG-------------~~yik 140 (204)
T TIGR01182 82 QFI--VSPGLTPELAKHAQDHGIPIIPGVATPSEIML----A-LELGITALKLFPAEVS-GG-------------VKMLK 140 (204)
T ss_pred CEE--ECCCCCHHHHHHHHHcCCcEECCCCCHHHHHH----H-HHCCCCEEEECCchhc-CC-------------HHHHH
Confidence 222 2333322 012223221 2 2578888887764321 11 35667
Q ss_pred HHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 200 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 200 ~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
.+..-++++|++..||| +.+.+.+.++.|+.+|.+|+.+..+..+
T Consensus 141 al~~plp~i~~~ptGGV-~~~N~~~~l~aGa~~vg~Gs~L~~~~~~ 185 (204)
T TIGR01182 141 ALAGPFPQVRFCPTGGI-NLANVRDYLAAPNVACGGGSWLVPKDLI 185 (204)
T ss_pred HHhccCCCCcEEecCCC-CHHHHHHHHhCCCEEEEEChhhcCchhh
Confidence 77766789999999999 5699999999999999999999865554
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >cd02812 PcrB_like PcrB_like proteins | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0006 Score=62.39 Aligned_cols=75 Identities=17% Similarity=0.204 Sum_probs=58.4
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
+.+.+..|...+.+. .+ |.. .+.+.+.++++...++||+.-|||+|+++++++++.|||+|.+|++
T Consensus 141 A~aae~~g~~ivyLe-~S----G~~---------~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsa 206 (219)
T cd02812 141 ALAAEYLGMPIVYLE-YS----GAY---------GPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGNI 206 (219)
T ss_pred HHHHHHcCCeEEEeC-CC----CCc---------CCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECch
Confidence 556677887776666 22 211 2267777777653389999999999999999999999999999999
Q ss_pred HhhCCchhh
Q 017176 239 AYQNPWYTL 247 (376)
Q Consensus 239 ~l~~P~lf~ 247 (376)
+..||.++.
T Consensus 207 i~~~p~~~~ 215 (219)
T cd02812 207 VEEDPNAAL 215 (219)
T ss_pred hhCCHHHHH
Confidence 999998753
|
One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown. |
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0007 Score=69.13 Aligned_cols=63 Identities=16% Similarity=0.116 Sum_probs=47.7
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEch
Q 017176 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGR 237 (376)
+.++|+|.|.+..-. |.+ ....+.++.+++.++++|||+ |.+.|.+.+..+++.|||+|-+|=
T Consensus 233 Lv~aGVd~i~~D~a~----g~~--------~~~~~~i~~i~~~~~~~~vi~-g~~~t~~~~~~l~~~G~d~i~vg~ 295 (475)
T TIGR01303 233 LLDAGVDVLVIDTAH----GHQ--------VKMISAIKAVRALDLGVPIVA-GNVVSAEGVRDLLEAGANIIKVGV 295 (475)
T ss_pred HHHhCCCEEEEeCCC----CCc--------HHHHHHHHHHHHHCCCCeEEE-eccCCHHHHHHHHHhCCCEEEECC
Confidence 346899999985322 111 112567888888888999999 889999999999999999987543
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00053 Score=64.65 Aligned_cols=79 Identities=19% Similarity=0.286 Sum_probs=61.0
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.+++.|++.|++--=...-.+ ...+.+.+.++.+. +++||++.|||.+.+|+++++..|++.|.+|++
T Consensus 36 a~~~~~~g~~~l~i~Dl~~~~~~---------~~~n~~~i~~i~~~-~~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~ 105 (258)
T PRK01033 36 VRIFNEKEVDELIVLDIDASKRG---------SEPNYELIENLASE-CFMPLCYGGGIKTLEQAKKIFSLGVEKVSINTA 105 (258)
T ss_pred HHHHHHcCCCEEEEEECCCCcCC---------CcccHHHHHHHHHh-CCCCEEECCCCCCHHHHHHHHHCCCCEEEEChH
Confidence 34456799999988532211011 11237888888876 489999999999999999999999999999999
Q ss_pred HhhCCchhh
Q 017176 239 AYQNPWYTL 247 (376)
Q Consensus 239 ~l~~P~lf~ 247 (376)
++.+|.++.
T Consensus 106 ~~~~~~~~~ 114 (258)
T PRK01033 106 ALEDPDLIT 114 (258)
T ss_pred HhcCHHHHH
Confidence 999999753
|
|
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.016 Score=55.23 Aligned_cols=208 Identities=11% Similarity=0.079 Sum_probs=123.7
Q ss_pred CcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeec-ccccccc---hhhhhhc-----cCCCCCCEEEEe---cCCCH
Q 017176 9 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAE-TIIYQQG---NLDRFLA-----FSPEQHPIVLQI---GGSNL 76 (376)
Q Consensus 9 nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~-~~~~~~~---~~~~~~~-----~~~~~~p~~vQL---~g~~~ 76 (376)
+..+++| ++-|..-.+++...| ...++|-..... .+...+. ...+++. ....+.|+++-+ +|+ +
T Consensus 12 ~~~l~~p--~~~Da~SAri~e~aG-f~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~~iPviaD~d~GyG~-~ 87 (285)
T TIGR02317 12 EDILQIP--GAINAMAALLAERAG-FEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVTDLPLLVDADTGFGE-A 87 (285)
T ss_pred CCcEEeC--CCCCHHHHHHHHHcC-CCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCC-H
Confidence 3456666 666776666776665 666665533322 2222221 1111111 123467888876 355 8
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHH
Q 017176 77 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLC 155 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~ 155 (376)
....+.++.+.++|+.+|.|-=... +| +.|.+++.-+-.++...+-|++++++. +.++.|=-|........+++.+
T Consensus 88 ~~v~~tv~~~~~aG~agi~IEDq~~-pK--~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI 164 (285)
T TIGR02317 88 FNVARTVREMEDAGAAAVHIEDQVL-PK--RCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAI 164 (285)
T ss_pred HHHHHHHHHHHHcCCeEEEEecCCC-cc--ccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHH
Confidence 9999999999999999999964432 22 234334443445666666666666653 4456666665332223466776
Q ss_pred HHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEe---cCCCCHHHHHHHHHcCcCe
Q 017176 156 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN---GGINTVDEVNAALRKGAHH 232 (376)
Q Consensus 156 ~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~n---GgI~s~~da~~~l~~Gad~ 232 (376)
+. ++...++|+|.|-+++-+. .+.+.++.++. ++|++.| |+-.-.-+++++-+.|+..
T Consensus 165 ~R-a~ay~~AGAD~vfi~g~~~-----------------~e~i~~~~~~i-~~Pl~~n~~~~~~~p~~s~~eL~~lGv~~ 225 (285)
T TIGR02317 165 ER-AKAYVEAGADMIFPEALTS-----------------LEEFRQFAKAV-KVPLLANMTEFGKTPLFTADELREAGYKM 225 (285)
T ss_pred HH-HHHHHHcCCCEEEeCCCCC-----------------HHHHHHHHHhc-CCCEEEEeccCCCCCCCCHHHHHHcCCcE
Confidence 65 3456679999999987321 45566777765 5788543 3321112455566689999
Q ss_pred eEEchHHhhC
Q 017176 233 VMVGRAAYQN 242 (376)
Q Consensus 233 VmiGRa~l~~ 242 (376)
|..|..++..
T Consensus 226 v~~~~~~~~a 235 (285)
T TIGR02317 226 VIYPVTAFRA 235 (285)
T ss_pred EEEchHHHHH
Confidence 9999665443
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0084 Score=55.20 Aligned_cols=154 Identities=15% Similarity=0.267 Sum_probs=94.7
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEE--EecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcc-cCccEEEEecC
Q 017176 67 IVLQIGGSNLDNLAKATELANAYNYDEI--NLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVSVKCRI 143 (376)
Q Consensus 67 ~~vQL~g~~~~~~~~aa~~~~~~G~d~I--eiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~-~~~pv~vKiR~ 143 (376)
+...|...|...+.+-.+.++++|+|.+ ||-=|+-+++.+ || -++++++++. ++.|+.|-+=.
T Consensus 6 i~pSil~ad~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN~t----fg----------~~~i~~lr~~~~~~~~dvHLMv 71 (223)
T PRK08745 6 IAPSILSADFARLGEEVDNVLKAGADWVHFDVMDNHYVPNLT----IG----------PMVCQALRKHGITAPIDVHLMV 71 (223)
T ss_pred EEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcc----cC----------HHHHHHHHhhCCCCCEEEEecc
Confidence 6778889999999999999999998875 444454444322 45 3577788877 57887775544
Q ss_pred CCCCCccHHHHHHHHHHHhhcCCccEEEEccCccc----------cC----CC--CCCC---------------------
Q 017176 144 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL----------LN----GI--SPAE--------------------- 186 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~----------~~----g~--~~~~--------------------- 186 (376)
.+ .+..++ . +.++|+|.|++|.-... .. |. .+..
T Consensus 72 --~~---P~~~i~---~-~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~ 142 (223)
T PRK08745 72 --EP---VDRIVP---D-FADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVN 142 (223)
T ss_pred --CC---HHHHHH---H-HHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEEC
Confidence 22 222222 2 23589999999854210 00 11 0000
Q ss_pred ----CCCCCcccHHHHHHHH---hh-CCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017176 187 ----NRTIPPLKYEYYYALL---RD-FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 187 ----~~~~~~~~~~~v~~~~---~~-~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
+...-+..++-+.+++ ++ ..++.|-..||| +.+.+..+.+.|||.+.+|+++...+.
T Consensus 143 PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI-~~eti~~l~~aGaDi~V~GSaiF~~~d 207 (223)
T PRK08745 143 PGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGV-KADNIGAIAAAGADTFVAGSAIFNAPD 207 (223)
T ss_pred CCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCC-CHHHHHHHHHcCCCEEEEChhhhCCCC
Confidence 0000000122333332 22 225678899999 588999999999999999999876554
|
|
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00027 Score=65.46 Aligned_cols=79 Identities=19% Similarity=0.294 Sum_probs=59.4
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.+++.|++.++|--=.+...|. +.+++.+.++.+.. .+||...|||+|.+|++++++.||+-|.+|+.
T Consensus 35 a~~~~~~g~~~l~ivDLdaa~~g~---------~~n~~~i~~i~~~~-~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~ 104 (229)
T PF00977_consen 35 AKAFNEQGADELHIVDLDAAKEGR---------GSNLELIKEIAKET-GIPIQVGGGIRSIEDAERLLDAGADRVVIGTE 104 (229)
T ss_dssp HHHHHHTT-SEEEEEEHHHHCCTH---------HHHHHHHHHHHHHS-SSEEEEESSE-SHHHHHHHHHTT-SEEEESHH
T ss_pred HHHHHHcCCCEEEEEEccCcccCc---------hhHHHHHHHHHhcC-CccEEEeCccCcHHHHHHHHHhCCCEEEeChH
Confidence 344568999999986322211121 12367888888875 79999999999999999999999999999999
Q ss_pred HhhCCchhh
Q 017176 239 AYQNPWYTL 247 (376)
Q Consensus 239 ~l~~P~lf~ 247 (376)
++.||.++.
T Consensus 105 ~~~~~~~l~ 113 (229)
T PF00977_consen 105 ALEDPELLE 113 (229)
T ss_dssp HHHCCHHHH
T ss_pred HhhchhHHH
Confidence 999999854
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.003 Score=57.77 Aligned_cols=149 Identities=14% Similarity=0.181 Sum_probs=98.7
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCcc-----ccC--C----CCccccccCCHHHHHHHHHHHhcc
Q 017176 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPK-----VAG--H----GCFGVSLMLDPKFVGEAMSVIAAN 132 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~-----v~r--~----g~yG~~l~~~~~~~~eiv~~v~~~ 132 (376)
..+++.=|.+.++++....++.+.+.|+..+||.+-.|... ..+ . -..|+.-.-+++.+.+.+++
T Consensus 12 ~~~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~a---- 87 (213)
T PRK06552 12 ANGVVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILA---- 87 (213)
T ss_pred HCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHc----
Confidence 44566667889999999999999999999999988766420 000 0 11344445556655554443
Q ss_pred cCccEEEEecCCCCC----------------CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHH
Q 017176 133 TNVPVSVKCRIGVDD----------------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE 196 (376)
Q Consensus 133 ~~~pv~vKiR~g~~~----------------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~ 196 (376)
+-.+.| +++++. ..+..|+. .. .+.|+|+|-+..... ...+
T Consensus 88 -GA~Fiv--sP~~~~~v~~~~~~~~i~~iPG~~T~~E~~----~A-~~~Gad~vklFPa~~---------------~G~~ 144 (213)
T PRK06552 88 -GAQFIV--SPSFNRETAKICNLYQIPYLPGCMTVTEIV----TA-LEAGSEIVKLFPGST---------------LGPS 144 (213)
T ss_pred -CCCEEE--CCCCCHHHHHHHHHcCCCEECCcCCHHHHH----HH-HHcCCCEEEECCccc---------------CCHH
Confidence 222222 233322 01233332 22 358999999854221 1146
Q ss_pred HHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHh
Q 017176 197 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240 (376)
Q Consensus 197 ~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l 240 (376)
+++.++.-++++|++..||| +.+.+.+.++.|+++|.+|..++
T Consensus 145 ~ik~l~~~~p~ip~~atGGI-~~~N~~~~l~aGa~~vavgs~l~ 187 (213)
T PRK06552 145 FIKAIKGPLPQVNVMVTGGV-NLDNVKDWFAAGADAVGIGGELN 187 (213)
T ss_pred HHHHHhhhCCCCEEEEECCC-CHHHHHHHHHCCCcEEEEchHHh
Confidence 67777777888999999999 58999999999999999999995
|
|
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.01 Score=53.44 Aligned_cols=140 Identities=18% Similarity=0.156 Sum_probs=89.4
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEE-ec
Q 017176 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK-CR 142 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vK-iR 142 (376)
+.|+++.+.-.++..+ -++.+.++|+|+|-+|.-.+ ++.+.++++.+++ .+.++.+- +.
T Consensus 53 ~~~i~~~~~v~~~~~~--~~~~~~~aGad~i~~h~~~~-----------------~~~~~~~i~~~~~-~g~~~~v~~~~ 112 (202)
T cd04726 53 DKIIVADLKTADAGAL--EAEMAFKAGADIVTVLGAAP-----------------LSTIKKAVKAAKK-YGKEVQVDLIG 112 (202)
T ss_pred CCEEEEEEEeccccHH--HHHHHHhcCCCEEEEEeeCC-----------------HHHHHHHHHHHHH-cCCeEEEEEeC
Confidence 6788887766665422 24667789999999985221 2334566676664 35555432 12
Q ss_pred CCCCCCccHHHHHHHHHHHhhcCCccEEEEcc-CccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHH
Q 017176 143 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS-RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE 221 (376)
Q Consensus 143 ~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~-r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~d 221 (376)
. .+..+..+ +.+.|+|++.++. ++....| .+...+.+.++.+. +++||++.|||+ +++
T Consensus 113 ~-----~t~~e~~~-----~~~~~~d~v~~~~~~~~~~~~---------~~~~~~~i~~~~~~-~~~~i~~~GGI~-~~~ 171 (202)
T cd04726 113 V-----EDPEKRAK-----LLKLGVDIVILHRGIDAQAAG---------GWWPEDDLKKVKKL-LGVKVAVAGGIT-PDT 171 (202)
T ss_pred C-----CCHHHHHH-----HHHCCCCEEEEcCcccccccC---------CCCCHHHHHHHHhh-cCCCEEEECCcC-HHH
Confidence 1 22333322 2357999999863 3221111 01125666666654 589999999995 999
Q ss_pred HHHHHHcCcCeeEEchHHhhCCc
Q 017176 222 VNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 222 a~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
+.++++.|||+|.+|+++...+.
T Consensus 172 i~~~~~~Gad~vvvGsai~~~~d 194 (202)
T cd04726 172 LPEFKKAGADIVIVGRAITGAAD 194 (202)
T ss_pred HHHHHhcCCCEEEEeehhcCCCC
Confidence 99999999999999999876655
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.007 Score=56.40 Aligned_cols=148 Identities=14% Similarity=0.160 Sum_probs=85.9
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCC------------CCC
Q 017176 80 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG------------VDD 147 (376)
Q Consensus 80 ~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g------------~~~ 147 (376)
.+.|+..+++|+++|-++. ....|||++ +.++.+++.+++||..|==+. -|-
T Consensus 64 ~~~A~~y~~~GA~aISVlT--------e~~~F~Gs~--------~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~GADa 127 (247)
T PRK13957 64 VQIAKTYETLGASAISVLT--------DQSYFGGSL--------EDLKSVSSELKIPVLRKDFILDEIQIREARAFGASA 127 (247)
T ss_pred HHHHHHHHHCCCcEEEEEc--------CCCcCCCCH--------HHHHHHHHhcCCCEEeccccCCHHHHHHHHHcCCCE
Confidence 3556678889999997752 233467655 345556666788998873221 000
Q ss_pred C------ccHHHHHHHHHHHhhcCCccEE-EEccCccc----cCCC--CCCCCCCCC--cccHHHHHHHHhhCC-CCeEE
Q 017176 148 H------DSYNQLCDFIYKVSSLSPTRHF-IIHSRKAL----LNGI--SPAENRTIP--PLKYEYYYALLRDFP-DLTFT 211 (376)
Q Consensus 148 ~------~~~~~~~~~i~~~~e~~Gvd~I-~vh~r~~~----~~g~--~~~~~~~~~--~~~~~~v~~~~~~~~-~ipVi 211 (376)
. -+.+++.++ ...+...|.+.+ .||...-. ..|. -+-+++... ..+.....++....| ++.+|
T Consensus 128 vLLI~~~L~~~~l~~l-~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~~vd~~~~~~L~~~ip~~~~~I 206 (247)
T PRK13957 128 ILLIVRILTPSQIKSF-LKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVAAFLPPNIVKV 206 (247)
T ss_pred EEeEHhhCCHHHHHHH-HHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCCCCcEEE
Confidence 0 011112222 223345566554 35543210 0010 011223222 223444556665555 57789
Q ss_pred EecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 212 LNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 212 ~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
+-+||.|++|+..+... +|+|.||.+++..+..
T Consensus 207 sESGI~t~~d~~~l~~~-~davLvG~~lm~~~d~ 239 (247)
T PRK13957 207 GESGIESRSDLDKFRKL-VDAALIGTYFMEKKDI 239 (247)
T ss_pred EcCCCCCHHHHHHHHHh-CCEEEECHHHhCCCCH
Confidence 99999999999998776 9999999999999885
|
|
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0017 Score=66.38 Aligned_cols=67 Identities=16% Similarity=0.144 Sum_probs=48.8
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeE--EchHH
Q 017176 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM--VGRAA 239 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vm--iGRa~ 239 (376)
+.++|++.|.+..-... + ....+.++++++++|+++||+ |+|.|.+.++.+++.|||+|- ||.|.
T Consensus 235 Lv~aGvd~i~~D~a~~~----~--------~~~~~~i~~ik~~~p~~~v~a-gnv~t~~~a~~l~~aGad~v~vgig~gs 301 (479)
T PRK07807 235 LLEAGVDVLVVDTAHGH----Q--------EKMLEALRAVRALDPGVPIVA-GNVVTAEGTRDLVEAGADIVKVGVGPGA 301 (479)
T ss_pred HHHhCCCEEEEeccCCc----c--------HHHHHHHHHHHHHCCCCeEEe-eccCCHHHHHHHHHcCCCEEEECccCCc
Confidence 34689999988643221 1 012678889999888887664 999999999999999999876 44544
Q ss_pred hh
Q 017176 240 YQ 241 (376)
Q Consensus 240 l~ 241 (376)
+.
T Consensus 302 ic 303 (479)
T PRK07807 302 MC 303 (479)
T ss_pred cc
Confidence 43
|
|
| >PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0009 Score=62.12 Aligned_cols=139 Identities=16% Similarity=0.186 Sum_probs=84.6
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcc---cCccEEEEecCCCCCC---ccHHH
Q 017176 80 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN---TNVPVSVKCRIGVDDH---DSYNQ 153 (376)
Q Consensus 80 ~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~---~~~pv~vKiR~g~~~~---~~~~~ 153 (376)
...++.+.+.|+|+|++-+ + ||...-.+.+.+.+.+.++++. .++|+.+-.-+ .++. +.-.+
T Consensus 79 ~~~ve~A~~~GAd~vd~vi-----~------~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l-~~~~~~~~~~~~ 146 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVI-----N------YGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYL-RGEEVADEKKPD 146 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEE-----E------HHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECE-CHHHBSSTTHHH
T ss_pred HHHHHHHHHcCCceeeeec-----c------ccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEec-CchhhcccccHH
Confidence 5667778889999999953 1 1211112334444444444443 46787776322 1110 01223
Q ss_pred HHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCe----EEEecCC------CCHHHHH
Q 017176 154 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLT----FTLNGGI------NTVDEVN 223 (376)
Q Consensus 154 ~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ip----Vi~nGgI------~s~~da~ 223 (376)
.+....+++.+.|+|.|-..-+.. .|.. ....+.+.++.+.. .+| |.++||| .+.+++.
T Consensus 147 ~I~~a~ria~e~GaD~vKt~tg~~--~~~t--------~~~~~~~~~~~~~~-~~p~~~~Vk~sGGi~~~~~~~~l~~a~ 215 (236)
T PF01791_consen 147 LIARAARIAAELGADFVKTSTGKP--VGAT--------PEDVELMRKAVEAA-PVPGKVGVKASGGIDAEDFLRTLEDAL 215 (236)
T ss_dssp HHHHHHHHHHHTT-SEEEEE-SSS--SCSH--------HHHHHHHHHHHHTH-SSTTTSEEEEESSSSHHHHHHSHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEecCCcc--cccc--------HHHHHHHHHHHHhc-CCCcceEEEEeCCCChHHHHHHHHHHH
Confidence 444556677789999999875521 1111 11244556666644 577 9999999 9999999
Q ss_pred HHHHcCc--CeeEEchHHhh
Q 017176 224 AALRKGA--HHVMVGRAAYQ 241 (376)
Q Consensus 224 ~~l~~Ga--d~VmiGRa~l~ 241 (376)
++++.|| -|+..||.++.
T Consensus 216 ~~i~aGa~~~G~~~Gr~i~q 235 (236)
T PF01791_consen 216 EFIEAGADRIGTSSGRNIWQ 235 (236)
T ss_dssp HHHHTTHSEEEEEEHHHHHT
T ss_pred HHHHcCChhHHHHHHHHHHc
Confidence 9999999 89999998764
|
|
| >PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P) | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00077 Score=62.01 Aligned_cols=70 Identities=19% Similarity=0.338 Sum_probs=50.4
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017176 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
-.|...|-+-.++..++ +. -+.+.+.++...++|+|.-|||+|.+++.++.+.|||.|.+|..+..||
T Consensus 151 ~~g~~~iYLEaGSGa~~-----------~v-~~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~~ 218 (230)
T PF01884_consen 151 YLGMPIIYLEAGSGAYG-----------PV-PEEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEEDP 218 (230)
T ss_dssp HTT-SEEEEE--TTSSS------------H-HHHHHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHHHH
T ss_pred HhCCCEEEEEeCCCCCC-----------Cc-cHHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEEcc
Confidence 46888888876543221 11 1444566666779999999999999999999999999999999999999
Q ss_pred ch
Q 017176 244 WY 245 (376)
Q Consensus 244 ~l 245 (376)
++
T Consensus 219 ~~ 220 (230)
T PF01884_consen 219 DL 220 (230)
T ss_dssp -H
T ss_pred hH
Confidence 84
|
This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B. |
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00071 Score=63.07 Aligned_cols=80 Identities=10% Similarity=0.070 Sum_probs=61.4
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.+++.|++.++|--=+....|. +.+++.+.++.+.. +||..-|||+|.++++++++.|||-|.||+.
T Consensus 36 A~~~~~~ga~~lhivDLd~a~~g~---------~~n~~~i~~i~~~~--~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~ 104 (241)
T PRK14114 36 VEKLIEEGFTLIHVVDLSKAIENS---------VENLPVLEKLSEFA--EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSK 104 (241)
T ss_pred HHHHHHCCCCEEEEEECCCcccCC---------cchHHHHHHHHhhc--CcEEEecCCCCHHHHHHHHHCCCCEEEECch
Confidence 344567999999875322111121 12477888888764 6999999999999999999999999999999
Q ss_pred HhhCCchhhHhh
Q 017176 239 AYQNPWYTLGHV 250 (376)
Q Consensus 239 ~l~~P~lf~~~~ 250 (376)
++.||.++ +++
T Consensus 105 a~~~p~~l-~~~ 115 (241)
T PRK14114 105 VLEDPSFL-KFL 115 (241)
T ss_pred hhCCHHHH-HHH
Confidence 99999874 454
|
|
| >PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0013 Score=59.65 Aligned_cols=75 Identities=17% Similarity=0.080 Sum_probs=54.7
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017176 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
+.|+|+|.+++-...... ....++..++.+.++++...++||++.||| +.+++.++++.|||+|.+|+++..++
T Consensus 122 ~~gaD~v~~~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~gs~i~~~~ 195 (212)
T PRK00043 122 AAGADYVGVGPIFPTPTK-----KDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVLEAGADGVAVVSAITGAE 195 (212)
T ss_pred HcCCCEEEECCccCCCCC-----CCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEEEEeHHhhcCC
Confidence 589999998743221110 011122336777787776645999999999 78999999999999999999987665
Q ss_pred c
Q 017176 244 W 244 (376)
Q Consensus 244 ~ 244 (376)
.
T Consensus 196 d 196 (212)
T PRK00043 196 D 196 (212)
T ss_pred C
Confidence 5
|
|
| >COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0021 Score=64.97 Aligned_cols=114 Identities=17% Similarity=0.114 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcc--c
Q 017176 118 DPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPL--K 194 (376)
Q Consensus 118 ~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~--~ 194 (376)
.++-+.+.|..+++.. ..+|+||+-.+.. +.. + +.-..++++|.|+|.|-.. |++-+.+..+... -
T Consensus 286 sieDLaqlI~dLk~~~~~~~I~VKlva~~~----v~~-i---aagvakA~AD~I~IdG~~G---GTGAsP~~~~~~~GiP 354 (485)
T COG0069 286 SIEDLAQLIKDLKEANPWAKISVKLVAEHG----VGT-I---AAGVAKAGADVITIDGADG---GTGASPLTSIDHAGIP 354 (485)
T ss_pred CHHHHHHHHHHHHhcCCCCeEEEEEecccc----hHH-H---HhhhhhccCCEEEEcCCCC---cCCCCcHhHhhcCCch
Confidence 3678888999998875 4579999876422 111 1 1112379999999987532 2211111111110 1
Q ss_pred HHH----HHHHHhhC---CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 195 YEY----YYALLRDF---PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 195 ~~~----v~~~~~~~---~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
|++ +.+..... -.+-|++.|++.|..|+..++..|||.|-+||+.|.-
T Consensus 355 ~e~glae~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~aLGAd~v~~gTa~lia 409 (485)
T COG0069 355 WELGLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALGADAVGFGTAALVA 409 (485)
T ss_pred HHHHHHHHHHHHHHcCCcceeEEEecCCccCHHHHHHHHHhCcchhhhchHHHHH
Confidence 331 12222221 1478999999999999999999999999999998754
|
|
| >PLN02460 indole-3-glycerol-phosphate synthase | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0069 Score=58.77 Aligned_cols=150 Identities=17% Similarity=0.171 Sum_probs=92.3
Q ss_pred HHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcc-cCccEEEEecC------------CC
Q 017176 79 LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVSVKCRI------------GV 145 (376)
Q Consensus 79 ~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~-~~~pv~vKiR~------------g~ 145 (376)
-.+.|+.-++.|+++|-+. +....|+|++ +-++.+|+. +++||-.|==+ |-
T Consensus 141 p~~iA~~Ye~~GA~aISVL--------Td~~~F~Gs~--------e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~GA 204 (338)
T PLN02460 141 PVEIAQAYEKGGAACLSVL--------TDEKYFQGSF--------ENLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKGA 204 (338)
T ss_pred HHHHHHHHHhCCCcEEEEe--------cCcCcCCCCH--------HHHHHHHHcCCCCCEeeccccCCHHHHHHHHHcCC
Confidence 3456666778899999875 3344567764 345677876 88999888321 21
Q ss_pred CCC------ccHHHHHHHHHHHhhcCCccEE-EEccCcc----ccC-CC--CCCCCCCCCcc--cHHHHHHHHh-----h
Q 017176 146 DDH------DSYNQLCDFIYKVSSLSPTRHF-IIHSRKA----LLN-GI--SPAENRTIPPL--KYEYYYALLR-----D 204 (376)
Q Consensus 146 ~~~------~~~~~~~~~i~~~~e~~Gvd~I-~vh~r~~----~~~-g~--~~~~~~~~~~~--~~~~v~~~~~-----~ 204 (376)
|-. -+-.++.. +.+++.+.|.+.+ .||.... ... |. -+-+|+..... +.....++.. .
T Consensus 205 DAVLLIaaiL~~~~L~~-l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~~ 283 (338)
T PLN02460 205 DAILLIAAVLPDLDIKY-MLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINNRSLETFEVDISNTKKLLEGERGEQ 283 (338)
T ss_pred CcHHHHHHhCCHHHHHH-HHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCcceECHHHHHHHhhhccccc
Confidence 110 01112222 2334556787766 4776531 111 21 12233433322 3444445544 2
Q ss_pred C--CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 205 F--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 205 ~--~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
. .++-+|+-+||.|++|+..+.+.|+|+|.||.+++..|+.
T Consensus 284 i~~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~~dp 326 (338)
T PLN02460 284 IREKGIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQDDP 326 (338)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhCCCCH
Confidence 2 1566899999999999999999999999999999999885
|
|
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.001 Score=62.04 Aligned_cols=71 Identities=20% Similarity=0.209 Sum_probs=58.0
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.+++.|+++|||--= | .+ +.+.+.++++.. ++||...|||++ ++++++++.|||.|.+|+.
T Consensus 44 A~~~~~~Ga~~lHvVDL-----g---------~~-n~~~i~~i~~~~-~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS~ 106 (253)
T TIGR02129 44 AKLYKDDGVKGCHVIML-----G---------PN-NDDAAKEALHAY-PGGLQVGGGIND-TNAQEWLDEGASHVIVTSW 106 (253)
T ss_pred HHHHHHcCCCEEEEEEC-----C---------CC-cHHHHHHHHHhC-CCCEEEeCCcCH-HHHHHHHHcCCCEEEECcH
Confidence 34566899999987531 2 12 478888888874 899999999998 9999999999999999999
Q ss_pred HhhC----Cchh
Q 017176 239 AYQN----PWYT 246 (376)
Q Consensus 239 ~l~~----P~lf 246 (376)
++.| |.++
T Consensus 107 av~~~~i~~~~~ 118 (253)
T TIGR02129 107 LFTKGKFDLKRL 118 (253)
T ss_pred HHhCCCCCHHHH
Confidence 9998 5554
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0018 Score=57.54 Aligned_cols=74 Identities=19% Similarity=0.074 Sum_probs=54.2
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017176 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
+.|+|+|.++.......+.. ...+..++.+.++++. .++||++.||| +.+++.++++.|+|+|.+|++++.++
T Consensus 113 ~~g~d~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~pv~a~GGi-~~~~i~~~~~~Ga~~i~~g~~i~~~~ 185 (196)
T cd00564 113 ELGADYVGFGPVFPTPTKPG-----AGPPLGLELLREIAEL-VEIPVVAIGGI-TPENAAEVLAAGADGVAVISAITGAD 185 (196)
T ss_pred hcCCCEEEECCccCCCCCCC-----CCCCCCHHHHHHHHHh-CCCCEEEECCC-CHHHHHHHHHcCCCEEEEehHhhcCC
Confidence 57999999875532111100 0023347777777664 58999999999 57999999999999999999998766
Q ss_pred c
Q 017176 244 W 244 (376)
Q Consensus 244 ~ 244 (376)
.
T Consensus 186 ~ 186 (196)
T cd00564 186 D 186 (196)
T ss_pred C
Confidence 5
|
TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. |
| >PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0048 Score=65.64 Aligned_cols=150 Identities=21% Similarity=0.197 Sum_probs=91.9
Q ss_pred HHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC------------CCC
Q 017176 79 LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI------------GVD 146 (376)
Q Consensus 79 ~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~------------g~~ 146 (376)
-.+.|+..++.|+++|-+. +....|||++ +-++.+++.+++||..|==+ |-|
T Consensus 72 ~~~~a~~y~~~GA~aiSVl--------Te~~~F~Gs~--------~~l~~vr~~v~~PvLrKDFIid~~QI~ea~~~GAD 135 (695)
T PRK13802 72 PAALAREYEQGGASAISVL--------TEGRRFLGSL--------DDFDKVRAAVHIPVLRKDFIVTDYQIWEARAHGAD 135 (695)
T ss_pred HHHHHHHHHHcCCcEEEEe--------cCcCcCCCCH--------HHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCC
Confidence 3455666788899999885 2344577765 34556677788999887321 111
Q ss_pred CC------ccHHHHHHHHHHHhhcCCccEE-EEccCccc----cCCC--CCCCCCCCCc--ccHHHHHHHHhhCC-CCeE
Q 017176 147 DH------DSYNQLCDFIYKVSSLSPTRHF-IIHSRKAL----LNGI--SPAENRTIPP--LKYEYYYALLRDFP-DLTF 210 (376)
Q Consensus 147 ~~------~~~~~~~~~i~~~~e~~Gvd~I-~vh~r~~~----~~g~--~~~~~~~~~~--~~~~~v~~~~~~~~-~ipV 210 (376)
-. -+-+++.+ +...+.+.|.+.| .||...-. ..|. -+-+++.+.. .+.....++....| ++.+
T Consensus 136 avLLI~~~L~~~~l~~-l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~~~ip~~~~~ 214 (695)
T PRK13802 136 LVLLIVAALDDAQLKH-LLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKDLKVDVNKYNELAADLPDDVIK 214 (695)
T ss_pred EeehhHhhcCHHHHHH-HHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccceeCHHHHHHHHhhCCCCcEE
Confidence 10 00112222 2234456777766 47755311 1110 1122333332 23444455555554 5778
Q ss_pred EEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 211 TLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 211 i~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
|+-+||.+++|+..+.+.|+|+|.||.+++..|+.
T Consensus 215 VsESGI~~~~d~~~l~~~G~davLIGeslm~~~dp 249 (695)
T PRK13802 215 VAESGVFGAVEVEDYARAGADAVLVGEGVATADDH 249 (695)
T ss_pred EEcCCCCCHHHHHHHHHCCCCEEEECHHhhCCCCH
Confidence 99999999999999999999999999999999884
|
|
| >TIGR00693 thiE thiamine-phosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.002 Score=57.78 Aligned_cols=75 Identities=20% Similarity=0.167 Sum_probs=53.7
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017176 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
+.|+|++.+..-.. .+. .....++..++.+.++++..+++||++.||| +.+++.+++++|+|+|.+|++++...
T Consensus 114 ~~g~dyi~~~~v~~--t~~---k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~~~G~~gva~~~~i~~~~ 187 (196)
T TIGR00693 114 AEGADYIGFGPIFP--TPT---KKDPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVLAAGADGVAVVSAIMQAA 187 (196)
T ss_pred HcCCCEEEECCccC--CCC---CCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEEEEhHHhhCCC
Confidence 58999998753211 110 0011123347777777766557999999999 69999999999999999999998654
Q ss_pred c
Q 017176 244 W 244 (376)
Q Consensus 244 ~ 244 (376)
.
T Consensus 188 d 188 (196)
T TIGR00693 188 D 188 (196)
T ss_pred C
Confidence 4
|
This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI. |
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.053 Score=51.94 Aligned_cols=206 Identities=11% Similarity=0.040 Sum_probs=121.2
Q ss_pred CcEEEccCCCCChHHHHHHHHHhCCCcEEEeccee-e-cccccccc---hhhhhhc-----cCCCCCCEEEEe---cCCC
Q 017176 9 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLA-A-ETIIYQQG---NLDRFLA-----FSPEQHPIVLQI---GGSN 75 (376)
Q Consensus 9 nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~-~-~~~~~~~~---~~~~~~~-----~~~~~~p~~vQL---~g~~ 75 (376)
+..+++| ++-|..-.+++...| ...++|-... + ..+...+- ...+++. ....+.|+++-+ +| +
T Consensus 16 ~~~l~~p--~~~Da~SAri~e~~G-f~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG-~ 91 (292)
T PRK11320 16 EKPLQIV--GTINAYHALLAERAG-FKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPLLVDIDTGFG-G 91 (292)
T ss_pred CCcEEec--CCCCHHHHHHHHHcC-CCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCC-C
Confidence 3455555 556666666666666 6666544322 2 22222221 1111111 123467888876 35 8
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHH
Q 017176 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQL 154 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~ 154 (376)
+....+.++.+.++|+.+|.|-=... +| +.|..++.-+-.++...+-|+++++.. +.++.|=-|...-....+++.
T Consensus 92 ~~~v~r~V~~~~~aGaagi~IEDq~~-pK--~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deA 168 (292)
T PRK11320 92 AFNIARTVKSMIKAGAAAVHIEDQVG-AK--RCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAA 168 (292)
T ss_pred HHHHHHHHHHHHHcCCeEEEEecCCC-cc--ccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHH
Confidence 99999999999999999999954332 22 234333433446666666666666543 556666666532222346677
Q ss_pred HHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEe---cCCCCHHHHHHHHHcCcC
Q 017176 155 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN---GGINTVDEVNAALRKGAH 231 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~n---GgI~s~~da~~~l~~Gad 231 (376)
++. ++...++|+|.|-+++-+. .+.+.++.++. +.|+++| ++-.-.-+.+++-+.|+.
T Consensus 169 I~R-a~aY~eAGAD~ifi~~~~~-----------------~~~i~~~~~~~-~~Pl~~n~~~~~~~p~~s~~~L~~lGv~ 229 (292)
T PRK11320 169 IER-AQAYVEAGADMIFPEAMTE-----------------LEMYRRFADAV-KVPILANITEFGATPLFTTEELASAGVA 229 (292)
T ss_pred HHH-HHHHHHcCCCEEEecCCCC-----------------HHHHHHHHHhc-CCCEEEEeccCCCCCCCCHHHHHHcCCc
Confidence 766 3456689999999997321 45566777665 6788443 332111234455557999
Q ss_pred eeEEchHHh
Q 017176 232 HVMVGRAAY 240 (376)
Q Consensus 232 ~VmiGRa~l 240 (376)
.|..|-.++
T Consensus 230 ~v~~~~~~~ 238 (292)
T PRK11320 230 MVLYPLSAF 238 (292)
T ss_pred EEEEChHHH
Confidence 999987654
|
|
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.031 Score=53.34 Aligned_cols=79 Identities=13% Similarity=0.191 Sum_probs=58.2
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEec--CCCCHHHHHHHHH
Q 017176 150 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG--GINTVDEVNAALR 227 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nG--gI~s~~da~~~l~ 227 (376)
+.++..+++ ++.|+|+|.+.-++..-... ..+.++++.+.++.+.. ++|+++-| || +.+++.++++
T Consensus 154 ~~eea~~f~----~~tgvD~Lavs~Gt~hg~~~------~~~~l~~e~L~~i~~~~-~iPlv~hGgSGi-~~e~i~~~i~ 221 (282)
T TIGR01859 154 DPDEAEQFV----KETGVDYLAAAIGTSHGKYK------GEPGLDFERLKEIKELT-NIPLVLHGASGI-PEEQIKKAIK 221 (282)
T ss_pred CHHHHHHHH----HHHCcCEEeeccCccccccC------CCCccCHHHHHHHHHHh-CCCEEEECCCCC-CHHHHHHHHH
Confidence 455654443 34799999987555321111 12456688898888765 89999999 99 5678999999
Q ss_pred cCcCeeEEchHHh
Q 017176 228 KGAHHVMVGRAAY 240 (376)
Q Consensus 228 ~Gad~VmiGRa~l 240 (376)
.|++.|-+++.+.
T Consensus 222 ~Gi~kiNv~T~l~ 234 (282)
T TIGR01859 222 LGIAKINIDTDCR 234 (282)
T ss_pred cCCCEEEECcHHH
Confidence 9999999999986
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.052 Score=52.04 Aligned_cols=207 Identities=9% Similarity=0.061 Sum_probs=119.7
Q ss_pred CcEEEccCCCCChHHHHHHHHHhCCCcEEEe-cceeecc-cccccc---hhhhhhc-----cCCCCCCEEEEe---cCCC
Q 017176 9 PWFSVAPMMDWTDNHYRTLARLISKHAWLYT-EMLAAET-IIYQQG---NLDRFLA-----FSPEQHPIVLQI---GGSN 75 (376)
Q Consensus 9 nri~lAPM~~~td~~~r~~~~~~Gg~gl~~t-e~v~~~~-~~~~~~---~~~~~~~-----~~~~~~p~~vQL---~g~~ 75 (376)
+..+++| ++-|..-.+++.+.| ...+++ ....+.. +...+- ...+++. ....+.|+++-+ +|+.
T Consensus 15 ~~~l~~p--~v~Da~SArl~e~aG-f~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~ 91 (294)
T TIGR02319 15 PEILVVP--SAYDALSAKVIQQAG-FPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAVDVPVIMDADAGYGNA 91 (294)
T ss_pred CCcEEee--cCcCHHHHHHHHHcC-CCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCc
Confidence 3345555 666777777777776 666664 4333221 222221 1111111 233567888877 4566
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHH
Q 017176 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQL 154 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~ 154 (376)
++ ..+.++.+.++|+.+|.|-=... +| +.|.+++.-+-..+...+-|++++++. +.++.|=-|........+++.
T Consensus 92 ~~-v~r~V~~~~~aGaagi~IEDq~~-pK--~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~dea 167 (294)
T TIGR02319 92 MS-VWRATREFERVGIVGYHLEDQVN-PK--RCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEA 167 (294)
T ss_pred HH-HHHHHHHHHHcCCeEEEEECCCC-cc--ccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHH
Confidence 66 67889999999999999964332 22 334444443445555555555555543 344555556532222346677
Q ss_pred HHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeE---EEecCCCCHHHHHHHHHcCcC
Q 017176 155 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF---TLNGGINTVDEVNAALRKGAH 231 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipV---i~nGgI~s~~da~~~l~~Gad 231 (376)
++. ++...++|+|.|-+++-. ..+.+.++.++. +.|+ +..|+-.-.-++.++-+.|++
T Consensus 168 I~R-a~aY~eAGAD~ifi~~~~-----------------~~~ei~~~~~~~-~~P~~~nv~~~~~~p~~s~~eL~~lG~~ 228 (294)
T TIGR02319 168 IRR-SREYVAAGADCIFLEAML-----------------DVEEMKRVRDEI-DAPLLANMVEGGKTPWLTTKELESIGYN 228 (294)
T ss_pred HHH-HHHHHHhCCCEEEecCCC-----------------CHHHHHHHHHhc-CCCeeEEEEecCCCCCCCHHHHHHcCCc
Confidence 766 345667999999998622 145566777765 5676 334433222345566667999
Q ss_pred eeEEchHHhh
Q 017176 232 HVMVGRAAYQ 241 (376)
Q Consensus 232 ~VmiGRa~l~ 241 (376)
.|..|-.++.
T Consensus 229 ~v~~~~~~~~ 238 (294)
T TIGR02319 229 LAIYPLSGWM 238 (294)
T ss_pred EEEEcHHHHH
Confidence 9999876644
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0083 Score=54.27 Aligned_cols=153 Identities=14% Similarity=0.155 Sum_probs=95.6
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCcc-----cc---CCCCccccccCCHHHHHHHHHHHhcccCc
Q 017176 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPK-----VA---GHGCFGVSLMLDPKFVGEAMSVIAANTNV 135 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~-----v~---r~g~yG~~l~~~~~~~~eiv~~v~~~~~~ 135 (376)
..+++.=|.+.++++..+.++.+.+.|+..|||.+..|... .. ..-..|+.-.-+++.+.+.+++ +-
T Consensus 3 ~~~vv~Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~a-----GA 77 (201)
T PRK06015 3 LQPVIPVLLIDDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKA-----GS 77 (201)
T ss_pred CCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHc-----CC
Confidence 34566667889999999999999999999999998876421 00 0111244444455555554443 12
Q ss_pred cEEEEecCCCCC----------------CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHH
Q 017176 136 PVSVKCRIGVDD----------------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 199 (376)
Q Consensus 136 pv~vKiR~g~~~----------------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~ 199 (376)
.+.| +++++. ..+..|+.. . .++|++.|-+.+... .+| ..+++
T Consensus 78 ~Fiv--SP~~~~~vi~~a~~~~i~~iPG~~TptEi~~----A-~~~Ga~~vK~FPa~~-~GG-------------~~yik 136 (201)
T PRK06015 78 RFIV--SPGTTQELLAAANDSDVPLLPGAATPSEVMA----L-REEGYTVLKFFPAEQ-AGG-------------AAFLK 136 (201)
T ss_pred CEEE--CCCCCHHHHHHHHHcCCCEeCCCCCHHHHHH----H-HHCCCCEEEECCchh-hCC-------------HHHHH
Confidence 2222 222221 012223322 2 258888888876432 111 35677
Q ss_pred HHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017176 200 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 200 ~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
.+..-+|++|++..||| +.+.+.+.++.|+..+..|..+..+.
T Consensus 137 al~~plp~~~l~ptGGV-~~~n~~~~l~ag~~~~~ggs~l~~~~ 179 (201)
T PRK06015 137 ALSSPLAGTFFCPTGGI-SLKNARDYLSLPNVVCVGGSWVAPKE 179 (201)
T ss_pred HHHhhCCCCcEEecCCC-CHHHHHHHHhCCCeEEEEchhhCCch
Confidence 77777889999999999 66899999998777666666655333
|
|
| >PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.011 Score=59.88 Aligned_cols=127 Identities=14% Similarity=0.123 Sum_probs=80.5
Q ss_pred HHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHH
Q 017176 82 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKV 161 (376)
Q Consensus 82 aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~ 161 (376)
-++.+.++|+|+|-++...+ ...+.++++.+++ .+.++.+.+ ++.. ++.+.+ . .
T Consensus 73 ~v~~a~~aGAdgV~v~g~~~-----------------~~~~~~~i~~a~~-~G~~~~~g~-~s~~--t~~e~~----~-~ 126 (430)
T PRK07028 73 EVEMAAKAGADIVCILGLAD-----------------DSTIEDAVRAARK-YGVRLMADL-INVP--DPVKRA----V-E 126 (430)
T ss_pred HHHHHHHcCCCEEEEecCCC-----------------hHHHHHHHHHHHH-cCCEEEEEe-cCCC--CHHHHH----H-H
Confidence 44567788999988763111 1123456666665 466655532 1111 122221 2 2
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017176 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
+.+.|+|+|.++.+..... ..+..++.++++++.. ++||++.||| +.+.+.++++.|||+|.+||+++.
T Consensus 127 a~~~GaD~I~~~pg~~~~~---------~~~~~~~~l~~l~~~~-~iPI~a~GGI-~~~n~~~~l~aGAdgv~vGsaI~~ 195 (430)
T PRK07028 127 LEELGVDYINVHVGIDQQM---------LGKDPLELLKEVSEEV-SIPIAVAGGL-DAETAAKAVAAGADIVIVGGNIIK 195 (430)
T ss_pred HHhcCCCEEEEEeccchhh---------cCCChHHHHHHHHhhC-CCcEEEECCC-CHHHHHHHHHcCCCEEEEChHHcC
Confidence 3468999998875431100 0112256777777654 7999999999 789999999999999999999987
Q ss_pred CCch
Q 017176 242 NPWY 245 (376)
Q Consensus 242 ~P~l 245 (376)
.+.+
T Consensus 196 ~~d~ 199 (430)
T PRK07028 196 SADV 199 (430)
T ss_pred CCCH
Confidence 7664
|
|
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0019 Score=60.37 Aligned_cols=77 Identities=22% Similarity=0.242 Sum_probs=60.3
Q ss_pred HHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHH
Q 017176 160 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~ 239 (376)
+.+++.|+..++|--=.... |. +.+.+.+.++.+.. .+||...|||+|.++++++++.|||-|.+|+.+
T Consensus 38 ~~~~~~g~~~lhivDLd~a~-g~---------~~n~~~i~~i~~~~-~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a 106 (243)
T TIGR01919 38 KWWEQGGAEWIHLVDLDAAF-GG---------GNNEMMLEEVVKLL-VVVEELSGGRRDDSSLRAALTGGRARVNGGTAA 106 (243)
T ss_pred HHHHhCCCeEEEEEECCCCC-CC---------cchHHHHHHHHHHC-CCCEEEcCCCCCHHHHHHHHHcCCCEEEECchh
Confidence 34467899888875322111 21 12377888888875 699999999999999999999999999999999
Q ss_pred hhCCchhh
Q 017176 240 YQNPWYTL 247 (376)
Q Consensus 240 l~~P~lf~ 247 (376)
+.||.++.
T Consensus 107 ~~~p~~~~ 114 (243)
T TIGR01919 107 LENPWWAA 114 (243)
T ss_pred hCCHHHHH
Confidence 99999854
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0057 Score=56.21 Aligned_cols=155 Identities=10% Similarity=0.047 Sum_probs=101.2
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCcccc---------CC---CCccccccCCHHHHHHHHHHHhc
Q 017176 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVA---------GH---GCFGVSLMLDPKFVGEAMSVIAA 131 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~---------r~---g~yG~~l~~~~~~~~eiv~~v~~ 131 (376)
..+++.=+.+.++++..+.++.+.+.|+..|||.+-.|...-. .+ -..|+.-.-+++.+.+.+++
T Consensus 14 ~~~vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~a--- 90 (222)
T PRK07114 14 ATGMVPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQL--- 90 (222)
T ss_pred hCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHc---
Confidence 4456666788999999999999999999999998876642100 00 01344444455555544433
Q ss_pred ccCccEEEEecCCCCC----------------CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccH
Q 017176 132 NTNVPVSVKCRIGVDD----------------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195 (376)
Q Consensus 132 ~~~~pv~vKiR~g~~~----------------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~ 195 (376)
+-.+.| +++++. ..+..|+.. . .++|++.|-+.+... .| .
T Consensus 91 --GA~FiV--sP~~~~~v~~~~~~~~i~~iPG~~TpsEi~~----A-~~~Ga~~vKlFPA~~--~G-------------~ 146 (222)
T PRK07114 91 --GANFIV--TPLFNPDIAKVCNRRKVPYSPGCGSLSEIGY----A-EELGCEIVKLFPGSV--YG-------------P 146 (222)
T ss_pred --CCCEEE--CCCCCHHHHHHHHHcCCCEeCCCCCHHHHHH----H-HHCCCCEEEECcccc--cC-------------H
Confidence 222222 233322 012223322 2 258888888876331 12 4
Q ss_pred HHHHHHHhhCCCCeEEEecCCCC-HHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 196 EYYYALLRDFPDLTFTLNGGINT-VDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 196 ~~v~~~~~~~~~ipVi~nGgI~s-~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
.+++.+..-+|+++++..|||.- .+++.+.++.|+.+|.+|+.+..+.++
T Consensus 147 ~~ikal~~p~p~i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~~~~~~ 197 (222)
T PRK07114 147 GFVKAIKGPMPWTKIMPTGGVEPTEENLKKWFGAGVTCVGMGSKLIPKEAL 197 (222)
T ss_pred HHHHHHhccCCCCeEEeCCCCCcchhcHHHHHhCCCEEEEEChhhcCcccc
Confidence 56677776678999999999984 589999999999999999998866654
|
|
| >COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0045 Score=56.34 Aligned_cols=138 Identities=15% Similarity=0.127 Sum_probs=84.4
Q ss_pred CCCHHH-HHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccH
Q 017176 73 GSNLDN-LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSY 151 (376)
Q Consensus 73 g~~~~~-~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~ 151 (376)
|.++.. =+.-++.+.+.|+|.||+=. + +|.-.-.+.+.+.+-+++|++.++-++.+|.-+-.... +-
T Consensus 72 G~~~t~~K~~Ea~~ai~~GAdEiDmVi-----n------ig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~L-t~ 139 (228)
T COG0274 72 GANTTAVKAAEAREAIENGADEIDMVI-----N------IGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLL-TD 139 (228)
T ss_pred CCChHHHHHHHHHHHHHcCCCeeeeee-----e------HHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEecccc-CH
Confidence 444433 23334566778999999832 1 24444567899999999999988655667765532211 12
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcC
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH 231 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad 231 (376)
++. .....+..++|+|+|--+.+.. ..| + . .-+..++.+.+. ..+.|=++|||+|.+|+..+++.|+.
T Consensus 140 ee~-~~A~~i~~~aGAdFVKTSTGf~-~~g---A---T--~edv~lM~~~vg--~~vgvKaSGGIrt~eda~~~i~aga~ 207 (228)
T COG0274 140 EEK-RKACEIAIEAGADFVKTSTGFS-AGG---A---T--VEDVKLMKETVG--GRVGVKASGGIRTAEDAKAMIEAGAT 207 (228)
T ss_pred HHH-HHHHHHHHHhCCCEEEcCCCCC-CCC---C---C--HHHHHHHHHHhc--cCceeeccCCcCCHHHHHHHHHHhHH
Confidence 232 2335566789999998664432 111 1 0 111223333332 26889999999999999999998854
Q ss_pred eeE
Q 017176 232 HVM 234 (376)
Q Consensus 232 ~Vm 234 (376)
-+.
T Consensus 208 RiG 210 (228)
T COG0274 208 RIG 210 (228)
T ss_pred Hhc
Confidence 433
|
|
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0054 Score=57.70 Aligned_cols=169 Identities=15% Similarity=0.192 Sum_probs=90.7
Q ss_pred EEEEecC--CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCC-----Ccccccc--CCHHHHHHHHHHHh-cccCcc
Q 017176 67 IVLQIGG--SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHG-----CFGVSLM--LDPKFVGEAMSVIA-ANTNVP 136 (376)
Q Consensus 67 ~~vQL~g--~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g-----~yG~~l~--~~~~~~~eiv~~v~-~~~~~p 136 (376)
++.=|.. .+.+.+.++++.+.+.|+|.|||.+ |...-.-.| ..=-+|. -+.+.+.++++.++ +..++|
T Consensus 12 li~yitaG~P~~~~~~~~~~~l~~~GaD~iEiGi--PfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~p 89 (259)
T PF00290_consen 12 LIPYITAGYPDLETTLEILKALEEAGADIIEIGI--PFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIP 89 (259)
T ss_dssp EEEEEETTSSSHHHHHHHHHHHHHTTBSSEEEE----SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECC--CCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCC
Confidence 4444443 4678999999999999999999964 322111000 0000010 25678889999999 777888
Q ss_pred EEEEecC------CCCCC----------------ccHHHHHHHHHHHhhcCCccEEEEc-cCcc----------------
Q 017176 137 VSVKCRI------GVDDH----------------DSYNQLCDFIYKVSSLSPTRHFIIH-SRKA---------------- 177 (376)
Q Consensus 137 v~vKiR~------g~~~~----------------~~~~~~~~~i~~~~e~~Gvd~I~vh-~r~~---------------- 177 (376)
+.+=.=. |++.. -.+++.. .+...+.+.|++.|-+- ..+.
T Consensus 90 ivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~-~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY 168 (259)
T PF00290_consen 90 IVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESE-ELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIY 168 (259)
T ss_dssp EEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHH-HHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEE
T ss_pred EEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHH-HHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEE
Confidence 8663211 11000 0011111 11223344555555431 1110
Q ss_pred --ccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017176 178 --LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 178 --~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
...|.++... .++..-.+.+..+++ ..++||..-=||++++++.++. .+||||.||++++.
T Consensus 169 ~vs~~GvTG~~~-~~~~~l~~~i~~ik~-~~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~v~ 231 (259)
T PF00290_consen 169 LVSRMGVTGSRT-ELPDELKEFIKRIKK-HTDLPVAVGFGISTPEQAKKLA-AGADGVIVGSAFVK 231 (259)
T ss_dssp EESSSSSSSTTS-SCHHHHHHHHHHHHH-TTSS-EEEESSS-SHHHHHHHH-TTSSEEEESHHHHH
T ss_pred eeccCCCCCCcc-cchHHHHHHHHHHHh-hcCcceEEecCCCCHHHHHHHH-ccCCEEEECHHHHH
Confidence 0123322211 111111345555554 4599999999999999999998 79999999999754
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.011 Score=53.55 Aligned_cols=144 Identities=19% Similarity=0.125 Sum_probs=90.4
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017176 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 63 ~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
.+++++.-+-..|.-.+ -++++.++|+|.+-+-+..|..+ +...++..++ .+.-+.+-+-
T Consensus 55 pd~~IvAD~Kt~D~G~~--e~~ma~~aGAd~~tV~g~A~~~T-----------------I~~~i~~A~~-~~~~v~iDl~ 114 (217)
T COG0269 55 PDKIIVADLKTADAGAI--EARMAFEAGADWVTVLGAADDAT-----------------IKKAIKVAKE-YGKEVQIDLI 114 (217)
T ss_pred CCCeEEeeeeecchhHH--HHHHHHHcCCCEEEEEecCCHHH-----------------HHHHHHHHHH-cCCeEEEEee
Confidence 45567666654444332 35778899999998866544432 2333444332 3455555544
Q ss_pred CCCCCCccHHHHHHHHHHHhhcCCccEEEEcc-CccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCCCCHH
Q 017176 143 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS-RKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVD 220 (376)
Q Consensus 143 ~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~-r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI~s~~ 220 (376)
-.|+ .++. .+.+++.|+|.+.+|- +.....|.+.. ++.+..+++... ...|-..||| +++
T Consensus 115 ~~~~----~~~~----~~~l~~~gvd~~~~H~g~D~q~~G~~~~---------~~~l~~ik~~~~~g~~vAVaGGI-~~~ 176 (217)
T COG0269 115 GVWD----PEQR----AKWLKELGVDQVILHRGRDAQAAGKSWG---------EDDLEKIKKLSDLGAKVAVAGGI-TPE 176 (217)
T ss_pred cCCC----HHHH----HHHHHHhCCCEEEEEecccHhhcCCCcc---------HHHHHHHHHhhccCceEEEecCC-CHH
Confidence 3332 3332 2334569999999994 44433453321 455555554432 3789999999 899
Q ss_pred HHHHHHHcCcCeeEEchHHhhCCc
Q 017176 221 EVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 221 da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
++..+...|+|.|.+||++-....
T Consensus 177 ~i~~~~~~~~~ivIvGraIt~a~d 200 (217)
T COG0269 177 DIPLFKGIGADIVIVGRAITGAKD 200 (217)
T ss_pred HHHHHhcCCCCEEEECchhcCCCC
Confidence 999999999999999999875554
|
|
| >PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0032 Score=57.02 Aligned_cols=149 Identities=19% Similarity=0.310 Sum_probs=86.8
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCE--EEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCC
Q 017176 67 IVLQIGGSNLDNLAKATELANAYNYDE--INLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG 144 (376)
Q Consensus 67 ~~vQL~g~~~~~~~~aa~~~~~~G~d~--IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g 144 (376)
+...|...+...+.+..+.++++|+|. +|+-=|.=+++. .|| -++++++++.+++|+.|-+=.
T Consensus 2 I~pSil~ad~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~----~~g----------~~~i~~i~~~~~~~~DvHLMv- 66 (201)
T PF00834_consen 2 ISPSILSADFLNLEEEIKRLEEAGADWLHIDIMDGHFVPNL----TFG----------PDIIKAIRKITDLPLDVHLMV- 66 (201)
T ss_dssp EEEBGGGS-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSSB-----B-----------HHHHHHHHTTSSSEEEEEEES-
T ss_pred eehhhhhCCHHHHHHHHHHHHHcCCCEEEEeecccccCCcc----cCC----------HHHHHHHhhcCCCcEEEEeee-
Confidence 567788888889999999999999986 455445433322 144 356777888888888887643
Q ss_pred CCCCccHHHHHHHHHHHhhcCCccEEEEccCccc----------cC----------------------------------
Q 017176 145 VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL----------LN---------------------------------- 180 (376)
Q Consensus 145 ~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~----------~~---------------------------------- 180 (376)
.+...+ ++ . +.++|++.|++|..... ..
T Consensus 67 -~~P~~~---i~---~-~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~P 138 (201)
T PF00834_consen 67 -ENPERY---IE---E-FAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEP 138 (201)
T ss_dssp -SSGGGH---HH---H-HHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-T
T ss_pred -ccHHHH---HH---H-HHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecC
Confidence 332222 21 1 22467777777743210 00
Q ss_pred CCCCCCCCCCCcccHHHHHHH---Hhh-CCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 181 GISPAENRTIPPLKYEYYYAL---LRD-FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 181 g~~~~~~~~~~~~~~~~v~~~---~~~-~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
|.++ ...-+..++-++++ .++ ..++.|...||| +.+.+..+.+.|||.+.+|++++.+
T Consensus 139 G~~G---q~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI-~~~~~~~~~~aGad~~V~Gs~iF~~ 200 (201)
T PF00834_consen 139 GFGG---QKFIPEVLEKIRELRKLIPENGLDFEIEVDGGI-NEENIKQLVEAGADIFVAGSAIFKA 200 (201)
T ss_dssp TTSS---B--HGGHHHHHHHHHHHHHHHTCGSEEEEESSE-STTTHHHHHHHT--EEEESHHHHTS
T ss_pred CCCc---ccccHHHHHHHHHHHHHHHhcCCceEEEEECCC-CHHHHHHHHHcCCCEEEECHHHhCC
Confidence 1111 00001112333333 222 236899999999 5668888889999999999998754
|
1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D .... |
| >COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.024 Score=52.82 Aligned_cols=147 Identities=22% Similarity=0.241 Sum_probs=88.9
Q ss_pred HHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC------------CCCCC-
Q 017176 82 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI------------GVDDH- 148 (376)
Q Consensus 82 aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~------------g~~~~- 148 (376)
.|+.-+++|+++|.+- +....|.|++ +.++.+++.+++||-.|==+ |-|-.
T Consensus 71 ia~~Ye~~GAa~iSVL--------Td~~~F~Gs~--------e~L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~~GADavL 134 (254)
T COG0134 71 IAKAYEEGGAAAISVL--------TDPKYFQGSF--------EDLRAVRAAVDLPVLRKDFIIDPYQIYEARAAGADAVL 134 (254)
T ss_pred HHHHHHHhCCeEEEEe--------cCccccCCCH--------HHHHHHHHhcCCCeeeccCCCCHHHHHHHHHcCcccHH
Confidence 4555667889998774 2233344433 34566777889999998322 11110
Q ss_pred -----ccHHHHHHHHHHHhhcCCccEEE-EccCccc----cCCC--CCCCCCCCCcc--cHHHHHHHHhhCC-CCeEEEe
Q 017176 149 -----DSYNQLCDFIYKVSSLSPTRHFI-IHSRKAL----LNGI--SPAENRTIPPL--KYEYYYALLRDFP-DLTFTLN 213 (376)
Q Consensus 149 -----~~~~~~~~~i~~~~e~~Gvd~I~-vh~r~~~----~~g~--~~~~~~~~~~~--~~~~v~~~~~~~~-~ipVi~n 213 (376)
-+-+++.+ +.....+.|.+.++ ||...-. ..|. -+-+++..... +.+...++....| +..+|.-
T Consensus 135 LI~~~L~~~~l~e-l~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIGINnRdL~tf~vdl~~t~~la~~~p~~~~~IsE 213 (254)
T COG0134 135 LIVAALDDEQLEE-LVDRAHELGMEVLVEVHNEEELERALKLGAKIIGINNRDLTTLEVDLETTEKLAPLIPKDVILISE 213 (254)
T ss_pred HHHHhcCHHHHHH-HHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEEEeCCCcchheecHHHHHHHHhhCCCCcEEEec
Confidence 00111222 23344567877664 6754310 0110 11233333322 2444555555555 4778999
Q ss_pred cCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 214 GGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 214 GgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
+||.+++|+..+...|+|++.||.+++.++..
T Consensus 214 SGI~~~~dv~~l~~~ga~a~LVG~slM~~~~~ 245 (254)
T COG0134 214 SGISTPEDVRRLAKAGADAFLVGEALMRADDP 245 (254)
T ss_pred CCCCCHHHHHHHHHcCCCEEEecHHHhcCCCH
Confidence 99999999999999999999999999999986
|
|
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0024 Score=58.88 Aligned_cols=79 Identities=25% Similarity=0.340 Sum_probs=61.7
Q ss_pred HHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHH
Q 017176 160 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~ 239 (376)
+-+++.|+.++|+--=+....| .+.+.+++.++.+.. ++||=.-|||+|.+++++.++.|++-|.+|+.+
T Consensus 38 ~~~~~~Ga~~lHlVDLdgA~~g---------~~~n~~~i~~i~~~~-~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~a 107 (241)
T COG0106 38 KKWSDQGAEWLHLVDLDGAKAG---------GPRNLEAIKEILEAT-DVPVQVGGGIRSLEDVEALLDAGVARVIIGTAA 107 (241)
T ss_pred HHHHHcCCcEEEEeeccccccC---------CcccHHHHHHHHHhC-CCCEEeeCCcCCHHHHHHHHHCCCCEEEEecce
Confidence 3456789999987422211111 122367888998875 899999999999999999999999999999999
Q ss_pred hhCCchhhH
Q 017176 240 YQNPWYTLG 248 (376)
Q Consensus 240 l~~P~lf~~ 248 (376)
+.||.++.+
T Consensus 108 v~~p~~v~~ 116 (241)
T COG0106 108 VKNPDLVKE 116 (241)
T ss_pred ecCHHHHHH
Confidence 999998643
|
|
| >PRK07315 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.075 Score=51.03 Aligned_cols=83 Identities=14% Similarity=0.142 Sum_probs=61.0
Q ss_pred ccHHHHHHHHHHHhhcCCccEEEEccCcc--ccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecC--CCCHHHHHH
Q 017176 149 DSYNQLCDFIYKVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG--INTVDEVNA 224 (376)
Q Consensus 149 ~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~--~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGg--I~s~~da~~ 224 (376)
.+.++..+++ +.|+|+|.+.-++. .+.+. .++++++.+.++.+...++|+++-|| | +.+++.+
T Consensus 154 t~peea~~f~-----~tgvD~LAv~iG~vHG~y~t~-------~k~l~~e~L~~i~~~~~~iPlVlhGGSGi-~~e~~~~ 220 (293)
T PRK07315 154 APIEDAKAMV-----ETGIDFLAAGIGNIHGPYPEN-------WEGLDLDHLEKLTEAVPGFPIVLHGGSGI-PDDQIQE 220 (293)
T ss_pred CCHHHHHHHH-----HcCCCEEeeccccccccCCCC-------CCcCCHHHHHHHHHhccCCCEEEECCCCC-CHHHHHH
Confidence 3455544432 58999998875443 12211 23567899999988764699999999 8 6688999
Q ss_pred HHHcCcCeeEEchHHhhCCc
Q 017176 225 ALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 225 ~l~~Gad~VmiGRa~l~~P~ 244 (376)
+++.|++.|-+++.+..+|.
T Consensus 221 ~i~~Gi~KiNv~T~i~~~~~ 240 (293)
T PRK07315 221 AIKLGVAKVNVNTECQIAFA 240 (293)
T ss_pred HHHcCCCEEEEccHHHHHHH
Confidence 99999999999999987544
|
|
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.12 Score=49.52 Aligned_cols=158 Identities=12% Similarity=0.118 Sum_probs=95.0
Q ss_pred CCCCCEEEEe-cCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCcccc---ccCCHHHHHHHHHHHhcc-cCcc
Q 017176 62 PEQHPIVLQI-GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVS---LMLDPKFVGEAMSVIAAN-TNVP 136 (376)
Q Consensus 62 ~~~~p~~vQL-~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~---l~~~~~~~~eiv~~v~~~-~~~p 136 (376)
....|+++-+ .|.++..+.+.++.+.++|+.+|.|-=.+- ++ +.+.+|+. .+-..+...+.++++++. .+.+
T Consensus 76 a~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~-pk--~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~ 152 (285)
T TIGR02320 76 VTTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLG-LK--KNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTED 152 (285)
T ss_pred hcCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCC-Cc--cccccCCCCcccccCHHHHHHHHHHHHHhccCCC
Confidence 3466877665 246889999999999999999999943221 11 22333332 344667777777777665 3333
Q ss_pred EEEEecCC--CCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhh----CCCCeE
Q 017176 137 VSVKCRIG--VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD----FPDLTF 210 (376)
Q Consensus 137 v~vKiR~g--~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~----~~~ipV 210 (376)
+.|=-|.. +.. ..+++.++. ++.+.++|+|.|-+++... +.+.+.++.++ +|++|+
T Consensus 153 ~~IiARTDa~~~~-~~~~eAi~R-a~ay~eAGAD~ifv~~~~~----------------~~~ei~~~~~~~~~~~p~~pl 214 (285)
T TIGR02320 153 FMIIARVESLILG-KGMEDALKR-AEAYAEAGADGIMIHSRKK----------------DPDEILEFARRFRNHYPRTPL 214 (285)
T ss_pred eEEEEeccccccc-CCHHHHHHH-HHHHHHcCCCEEEecCCCC----------------CHHHHHHHHHHhhhhCCCCCE
Confidence 44434421 111 236666665 4556789999999985211 02223333333 456898
Q ss_pred EEecCCCCHHHHHHHHHcCcCeeEEchHHh
Q 017176 211 TLNGGINTVDEVNAALRKGAHHVMVGRAAY 240 (376)
Q Consensus 211 i~nGgI~s~~da~~~l~~Gad~VmiGRa~l 240 (376)
+.+.+-...-++.++-+.|+..|..|-.++
T Consensus 215 ~~~~~~~~~~~~~eL~~lG~~~v~~~~~~~ 244 (285)
T TIGR02320 215 VIVPTSYYTTPTDEFRDAGISVVIYANHLL 244 (285)
T ss_pred EEecCCCCCCCHHHHHHcCCCEEEEhHHHH
Confidence 876532222245666668999999986665
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.003 Score=58.55 Aligned_cols=78 Identities=10% Similarity=0.009 Sum_probs=59.3
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.+.+.|++.++|--=.... +. +.+.+.+.++.+.. ..||-.-|||+|.++++++++.|||-|.+|+.
T Consensus 36 a~~~~~~ga~~lhivDLd~a~-~~---------~~n~~~i~~i~~~~-~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~ 104 (232)
T PRK13586 36 ASKLYNEGYTRIHVVDLDAAE-GV---------GNNEMYIKEISKIG-FDWIQVGGGIRDIEKAKRLLSLDVNALVFSTI 104 (232)
T ss_pred HHHHHHCCCCEEEEEECCCcC-CC---------cchHHHHHHHHhhC-CCCEEEeCCcCCHHHHHHHHHCCCCEEEECch
Confidence 344567999999875322211 21 11367788887743 24999999999999999999999999999999
Q ss_pred HhhCCchhh
Q 017176 239 AYQNPWYTL 247 (376)
Q Consensus 239 ~l~~P~lf~ 247 (376)
++.||.++.
T Consensus 105 a~~~p~~~~ 113 (232)
T PRK13586 105 VFTNFNLFH 113 (232)
T ss_pred hhCCHHHHH
Confidence 999999753
|
|
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0095 Score=61.77 Aligned_cols=135 Identities=9% Similarity=0.095 Sum_probs=86.7
Q ss_pred HHHHHHHHHCCCCEEEecCCC---CCccccCCCCccccccCCHHHHHHHHHHHhcc-cCccEE-----------------
Q 017176 80 AKATELANAYNYDEINLNCGC---PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVS----------------- 138 (376)
Q Consensus 80 ~~aa~~~~~~G~d~IeiN~gc---P~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~-~~~pv~----------------- 138 (376)
.+.++.+-++|+|-|-||... |.. -|-++-..+|+++.++.+..-+. +-+-+.
T Consensus 337 ~e~~~~~l~~GadkV~i~s~Av~~~~~------~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~ 410 (538)
T PLN02617 337 LEVASEYFRSGADKISIGSDAVYAAEE------YIASGVKTGKTSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTV 410 (538)
T ss_pred HHHHHHHHHcCCCEEEEChHHHhChhh------hhccccccCHHHHHHHHHHcCCceEEEEEecCcCcccCccccccccc
Confidence 345666777899999998531 211 11222456899999999887432 111111
Q ss_pred ----------------EEecCCCCCCc--cHHHHHHHHHHHhhcCCccEEEEccCc--cccCCCCCCCCCCCCcccHHHH
Q 017176 139 ----------------VKCRIGVDDHD--SYNQLCDFIYKVSSLSPTRHFIIHSRK--ALLNGISPAENRTIPPLKYEYY 198 (376)
Q Consensus 139 ----------------vKiR~g~~~~~--~~~~~~~~i~~~~e~~Gvd~I~vh~r~--~~~~g~~~~~~~~~~~~~~~~v 198 (376)
|.+. ||.+.. +..++ ++.+++.|+..|.+..-. ....|+ +++++
T Consensus 411 ~~~~~~~~~~~~~~~~v~~~-gg~~~~~~~~~~~----~~~~~~~Gageil~t~id~DGt~~G~-----------d~~l~ 474 (538)
T PLN02617 411 KVTNPGPNGEEYAWYQCTVK-GGREGRPIGAYEL----AKAVEELGAGEILLNCIDCDGQGKGF-----------DIELV 474 (538)
T ss_pred cccccCcCcccceEEEEEEe-cCcccCCCCHHHH----HHHHHhcCCCEEEEeeccccccccCc-----------CHHHH
Confidence 2222 333322 23333 334567999998886432 233332 26777
Q ss_pred HHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEch
Q 017176 199 YALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGR 237 (376)
Q Consensus 199 ~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGR 237 (376)
.++.+. +++|||++||+.+++|+.++++ +|+|+++.|.
T Consensus 475 ~~v~~~-~~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~ 513 (538)
T PLN02617 475 KLVSDA-VTIPVIASSGAGTPEHFSDVFSKTNASAALAAG 513 (538)
T ss_pred HHHHhh-CCCCEEEECCCCCHHHHHHHHhcCCccEEEEEe
Confidence 777765 5999999999999999999998 8899999884
|
|
| >COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0045 Score=56.43 Aligned_cols=75 Identities=19% Similarity=0.111 Sum_probs=56.2
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
++.|+|+|.+-.-..... +. .. ++..++.++.+.+. ..+|+++-||| +++.+.+++++|||+|.+-|+++..
T Consensus 121 ~~~g~DYv~~GpifpT~t----K~-~~-~~~G~~~l~~~~~~-~~iP~vAIGGi-~~~nv~~v~~~Ga~gVAvvsai~~a 192 (211)
T COG0352 121 EELGADYVGLGPIFPTST----KP-DA-PPLGLEGLREIREL-VNIPVVAIGGI-NLENVPEVLEAGADGVAVVSAITSA 192 (211)
T ss_pred HhcCCCEEEECCcCCCCC----CC-CC-CccCHHHHHHHHHh-CCCCEEEEcCC-CHHHHHHHHHhCCCeEEehhHhhcC
Confidence 468899999854321110 11 11 45557878776654 46999999999 8999999999999999999999987
Q ss_pred Cch
Q 017176 243 PWY 245 (376)
Q Consensus 243 P~l 245 (376)
+..
T Consensus 193 ~d~ 195 (211)
T COG0352 193 ADP 195 (211)
T ss_pred CCH
Confidence 775
|
|
| >COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.031 Score=51.08 Aligned_cols=41 Identities=22% Similarity=0.423 Sum_probs=37.3
Q ss_pred CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchhh
Q 017176 207 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247 (376)
Q Consensus 207 ~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~ 247 (376)
..|+|.-|||+|++++.++.+.|||.+..|..+..+|.-+.
T Consensus 191 ~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~~~~~~ 231 (240)
T COG1646 191 DTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEEDPDKAL 231 (240)
T ss_pred cceEEEcCCcCCHHHHHHHHHcCCCEEEECceeecCHHHHH
Confidence 35999999999999999999999999999999999997643
|
|
| >PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) [] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0014 Score=57.10 Aligned_cols=117 Identities=21% Similarity=0.337 Sum_probs=66.6
Q ss_pred HHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHH
Q 017176 81 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 160 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~ 160 (376)
+-|++++++|+-.|-.----|.+ .|+.+ |-+-|.||..+.+|.++| .+||..|.|+|- +.| ++
T Consensus 25 eQAkIAE~AGA~AVMaLervPad--iR~~G-GVaRMsDP~~I~eI~~aV----sIPVMAK~RIGH-----fvE-----Aq 87 (208)
T PF01680_consen 25 EQAKIAEEAGAVAVMALERVPAD--IRAAG-GVARMSDPKMIKEIMDAV----SIPVMAKVRIGH-----FVE-----AQ 87 (208)
T ss_dssp HHHHHHHHHT-SEEEE-SS-HHH--HHHTT-S---S--HHHHHHHHHH-----SSEEEEEEETT------HHH-----HH
T ss_pred HHHHHHHHhCCeEEEEeccCCHh--HHhcC-CccccCCHHHHHHHHHhe----Eeceeeccccce-----eeh-----hh
Confidence 46888999998777665445554 35555 888999999988887775 699999999972 222 67
Q ss_pred HhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHH-HhhCCCCeEEEecCCCCHHHHHHHHHcCcCee
Q 017176 161 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL-LRDFPDLTFTLNGGINTVDEVNAALRKGAHHV 233 (376)
Q Consensus 161 ~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~-~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~V 233 (376)
+++..|+|+|.=|-- ++++|..+ -+ +..+ ++|++. |-++.-.+.+-+.-||.++
T Consensus 88 iLealgVD~IDESEV------LTpAD~~~----------HI~K~~F-~vPFVc--GarnLGEALRRI~EGAaMI 142 (208)
T PF01680_consen 88 ILEALGVDYIDESEV------LTPADEEN----------HIDKHNF-KVPFVC--GARNLGEALRRIAEGAAMI 142 (208)
T ss_dssp HHHHTT-SEEEEETT------S--S-SS--------------GGG--SS-EEE--EESSHHHHHHHHHTT-SEE
T ss_pred hHHHhCCceeccccc------cccccccc----------cccchhC-CCCeEe--cCCCHHHHHhhHHhhhhhh
Confidence 889999999985531 12233211 11 1234 788764 3446666666666677654
|
Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A .... |
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.01 Score=53.47 Aligned_cols=154 Identities=21% Similarity=0.251 Sum_probs=85.9
Q ss_pred CCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccc--------cCCCCccccccCCHHHHHHHHHHHhcccCcc
Q 017176 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKV--------AGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 136 (376)
Q Consensus 65 ~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v--------~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~p 136 (376)
.+++.=|.+.++++..+.++.+.+.|+..|||.+-.|...- ...-..|+.-.-+++.+.+.+++ +-.
T Consensus 8 ~~iiaVir~~~~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~a-----GA~ 82 (196)
T PF01081_consen 8 NKIIAVIRGDDPEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAA-----GAQ 82 (196)
T ss_dssp HSEEEEETTSSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHH-----T-S
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHc-----CCC
Confidence 35666678889999999999999999999999886553100 00001122222333333333222 111
Q ss_pred EEEEecCCCCCC----------------ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHH
Q 017176 137 VSVKCRIGVDDH----------------DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA 200 (376)
Q Consensus 137 v~vKiR~g~~~~----------------~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~ 200 (376)
+.| +++++.. .+..|+. +. .++|++.+-+.+-... +| ..+++.
T Consensus 83 Fiv--SP~~~~~v~~~~~~~~i~~iPG~~TptEi~----~A-~~~G~~~vK~FPA~~~-GG-------------~~~ik~ 141 (196)
T PF01081_consen 83 FIV--SPGFDPEVIEYAREYGIPYIPGVMTPTEIM----QA-LEAGADIVKLFPAGAL-GG-------------PSYIKA 141 (196)
T ss_dssp EEE--ESS--HHHHHHHHHHTSEEEEEESSHHHHH----HH-HHTT-SEEEETTTTTT-TH-------------HHHHHH
T ss_pred EEE--CCCCCHHHHHHHHHcCCcccCCcCCHHHHH----HH-HHCCCCEEEEecchhc-Cc-------------HHHHHH
Confidence 111 1222110 0111221 11 2456666665543321 11 467778
Q ss_pred HHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 201 LLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 201 ~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
+..-+++++++..|||. .+.+.+.++.|+.+|.+|+.+..+.++
T Consensus 142 l~~p~p~~~~~ptGGV~-~~N~~~~l~ag~~~vg~Gs~L~~~~~i 185 (196)
T PF01081_consen 142 LRGPFPDLPFMPTGGVN-PDNLAEYLKAGAVAVGGGSWLFPKDLI 185 (196)
T ss_dssp HHTTTTT-EEEEBSS---TTTHHHHHTSTTBSEEEESGGGSHHHH
T ss_pred HhccCCCCeEEEcCCCC-HHHHHHHHhCCCEEEEECchhcCHHHH
Confidence 87778899999999995 589999999999999999988766654
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0035 Score=58.85 Aligned_cols=74 Identities=16% Similarity=0.087 Sum_probs=58.3
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.+++.|++++||--=.+ |. +.+.+.+.++++ . ++||-.-|||++ ++++++++.|||-|.||+.
T Consensus 49 A~~~~~~Ga~~lHvVDLdg---g~---------~~n~~~i~~i~~-~-~~~vqvGGGIR~-e~i~~~l~~Ga~rViigT~ 113 (262)
T PLN02446 49 AEMYKRDGLTGGHVIMLGA---DD---------ASLAAALEALRA-Y-PGGLQVGGGVNS-ENAMSYLDAGASHVIVTSY 113 (262)
T ss_pred HHHHHHCCCCEEEEEECCC---CC---------cccHHHHHHHHh-C-CCCEEEeCCccH-HHHHHHHHcCCCEEEEchH
Confidence 4456689999998752111 11 123677888887 4 799999999996 9999999999999999999
Q ss_pred HhhC----Cchhh
Q 017176 239 AYQN----PWYTL 247 (376)
Q Consensus 239 ~l~~----P~lf~ 247 (376)
++.| |.++.
T Consensus 114 Av~~~~~~p~~v~ 126 (262)
T PLN02446 114 VFRDGQIDLERLK 126 (262)
T ss_pred HHhCCCCCHHHHH
Confidence 9999 98753
|
|
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0037 Score=57.97 Aligned_cols=78 Identities=21% Similarity=0.246 Sum_probs=60.6
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.+++.|++.++|---.+.. |. +.+.+.+.++.+.. .+||..-|||++.+|+++++..||+-|.+|+.
T Consensus 41 a~~~~~~g~~~l~i~DLd~~~-~~---------~~n~~~i~~i~~~~-~~~v~vgGGir~~edv~~~l~~Ga~~viigt~ 109 (233)
T cd04723 41 ARAYKELGFRGLYIADLDAIM-GR---------GDNDEAIRELAAAW-PLGLWVDGGIRSLENAQEWLKRGASRVIVGTE 109 (233)
T ss_pred HHHHHHCCCCEEEEEeCcccc-CC---------CccHHHHHHHHHhC-CCCEEEecCcCCHHHHHHHHHcCCCeEEEcce
Confidence 344567899999985433221 21 12367788888764 79999999999999999999999999999999
Q ss_pred HhhCCchhhH
Q 017176 239 AYQNPWYTLG 248 (376)
Q Consensus 239 ~l~~P~lf~~ 248 (376)
++.| .++.+
T Consensus 110 ~~~~-~~~~~ 118 (233)
T cd04723 110 TLPS-DDDED 118 (233)
T ss_pred eccc-hHHHH
Confidence 9999 87543
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >PRK05283 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.016 Score=54.29 Aligned_cols=134 Identities=16% Similarity=0.142 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHH
Q 017176 77 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 156 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~ 156 (376)
+.-..-++.+.+.|+|.||+=+ + +|.-+..+.+.+.+-+++|++.++-++.+|+-+-.....+- +.+.
T Consensus 83 ~~K~~Ea~~Ai~~GAdEiD~Vi-----n------ig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~e-e~i~ 150 (257)
T PRK05283 83 DIALAETRAAIAYGADEVDVVF-----P------YRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDE-ALIR 150 (257)
T ss_pred HHHHHHHHHHHHcCCCEEeeec-----c------HHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCH-HHHH
Confidence 3333344556677999999832 1 35555567788888888888765423455554421111111 1122
Q ss_pred HHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC---CCCeEEEecCCCCHHHHHHHHHcCcC
Q 017176 157 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF---PDLTFTLNGGINTVDEVNAALRKGAH 231 (376)
Q Consensus 157 ~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~---~~ipVi~nGgI~s~~da~~~l~~Gad 231 (376)
.+.+++.++|+|+|--+.+... .| + .+-+...+.+.+++. .++-|=++|||+|.+++.++++.|.+
T Consensus 151 ~a~~~a~~aGADFVKTSTGf~~-~g---A-----t~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~ag~~ 219 (257)
T PRK05283 151 KASEIAIKAGADFIKTSTGKVP-VN---A-----TLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLALADE 219 (257)
T ss_pred HHHHHHHHhCCCEEEcCCCCCC-CC---C-----CHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHHHHH
Confidence 2345666899999886644210 11 1 111133333443321 25788999999999999999986544
|
|
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.016 Score=52.88 Aligned_cols=154 Identities=19% Similarity=0.226 Sum_probs=89.7
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCcc-----cc---CCCCccccccCCHHHHHHHHHHHhcccCc
Q 017176 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPK-----VA---GHGCFGVSLMLDPKFVGEAMSVIAANTNV 135 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~-----v~---r~g~yG~~l~~~~~~~~eiv~~v~~~~~~ 135 (376)
..+++.=+.+.++++..+.++.+.+.|++.|||.+-.|... .. ..-.-|+...-+++.+...+++ +-
T Consensus 14 ~~~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~a-----GA 88 (212)
T PRK05718 14 AGPVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEA-----GA 88 (212)
T ss_pred HCCEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHc-----CC
Confidence 45666668899999999999999999999999987655310 00 0001233322333333222221 11
Q ss_pred cEEEEecCCCCC----------------CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHH
Q 017176 136 PVSVKCRIGVDD----------------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 199 (376)
Q Consensus 136 pv~vKiR~g~~~----------------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~ 199 (376)
.+.+ .++++. ..+..|+ .. +.+.|++.+.+...... .| ..+++
T Consensus 89 ~Fiv--sP~~~~~vi~~a~~~~i~~iPG~~TptEi----~~-a~~~Ga~~vKlFPa~~~-gg-------------~~~lk 147 (212)
T PRK05718 89 QFIV--SPGLTPPLLKAAQEGPIPLIPGVSTPSEL----ML-GMELGLRTFKFFPAEAS-GG-------------VKMLK 147 (212)
T ss_pred CEEE--CCCCCHHHHHHHHHcCCCEeCCCCCHHHH----HH-HHHCCCCEEEEccchhc-cC-------------HHHHH
Confidence 1111 122221 0122232 12 23588888888653211 11 45677
Q ss_pred HHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 200 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 200 ~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
.+..-++++|++..||| +.+++.+.++.| +.+.+|.+.|.+..+
T Consensus 148 ~l~~p~p~~~~~ptGGV-~~~ni~~~l~ag-~v~~vggs~L~~~~~ 191 (212)
T PRK05718 148 ALAGPFPDVRFCPTGGI-SPANYRDYLALP-NVLCIGGSWMVPKDA 191 (212)
T ss_pred HHhccCCCCeEEEeCCC-CHHHHHHHHhCC-CEEEEEChHhCCcch
Confidence 77777789999999999 569999999988 455555555555443
|
|
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.054 Score=51.76 Aligned_cols=151 Identities=17% Similarity=0.192 Sum_probs=88.7
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec-
Q 017176 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR- 142 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR- 142 (376)
..|++++|=+... .+.++.+.+.||+.|.+-.. ...+..+.+...++++..+. .+++|-.-+.
T Consensus 74 ~vpV~lHlDH~~~---~e~i~~Ai~~GftSVm~D~S------------~l~~eeNi~~t~~v~~~a~~-~gv~VE~ElG~ 137 (286)
T PRK06801 74 DIPVVLNLDHGLH---FEAVVRALRLGFSSVMFDGS------------TLEYEENVRQTREVVKMCHA-VGVSVEAELGA 137 (286)
T ss_pred CCCEEEECCCCCC---HHHHHHHHHhCCcEEEEcCC------------CCCHHHHHHHHHHHHHHHHH-cCCeEEeecCc
Confidence 4466666644321 12344445567777766321 11233455566666665543 2444422221
Q ss_pred CC-CCC-----------CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeE
Q 017176 143 IG-VDD-----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF 210 (376)
Q Consensus 143 ~g-~~~-----------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipV 210 (376)
+| -++ ..+.++..++ .++.|+|+|.++-++..-... ..++++++.+.++.+.. ++|+
T Consensus 138 vgg~e~~v~~~~~~~~~~T~pe~a~~f----~~~tgvD~LAvaiGt~Hg~y~------~~~~l~~e~l~~i~~~~-~~PL 206 (286)
T PRK06801 138 VGGDEGGALYGEADSAKFTDPQLARDF----VDRTGIDALAVAIGNAHGKYK------GEPKLDFARLAAIHQQT-GLPL 206 (286)
T ss_pred ccCCCCCcccCCcccccCCCHHHHHHH----HHHHCcCEEEeccCCCCCCCC------CCCCCCHHHHHHHHHhc-CCCE
Confidence 11 111 1223444444 346899999996655421111 12356789898887764 8999
Q ss_pred EEecC--CCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 211 TLNGG--INTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 211 i~nGg--I~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
+.-|| |. .+++.++++.|++.|-+++++..-
T Consensus 207 VlHGGSgi~-~e~~~~~i~~Gi~KINv~T~~~~a 239 (286)
T PRK06801 207 VLHGGSGIS-DADFRRAIELGIHKINFYTGMSQA 239 (286)
T ss_pred EEECCCCCC-HHHHHHHHHcCCcEEEehhHHHHH
Confidence 99999 74 678899999999999999987543
|
|
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.014 Score=57.01 Aligned_cols=107 Identities=10% Similarity=0.085 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCcc-ccCCCCCCCCCCCCcccHHH
Q 017176 119 PKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-LLNGISPAENRTIPPLKYEY 197 (376)
Q Consensus 119 ~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~-~~~g~~~~~~~~~~~~~~~~ 197 (376)
.+...+.++.+++.++.|+.++++.. + .++..+. ++.++++|+|+|.+|..-. ...+..+ .......++.
T Consensus 86 ~d~~~~~i~~~~~~~~~pvi~sI~g~--~---~~e~~~~-a~~~~~agad~ielN~scpp~~~~~~g---~~~~~~~~ei 156 (334)
T PRK07565 86 PEEYLELIRRAKEAVDIPVIASLNGS--S---AGGWVDY-ARQIEQAGADALELNIYYLPTDPDISG---AEVEQRYLDI 156 (334)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeccC--C---HHHHHHH-HHHHHHcCCCEEEEeCCCCCCCCCCcc---ccHHHHHHHH
Confidence 56777777777777789999999652 2 2343433 3445678999999975321 1011111 1111112456
Q ss_pred HHHHHhhCCCCeEEEe--cCCCCHHHHHHHHH-cCcCeeEE
Q 017176 198 YYALLRDFPDLTFTLN--GGINTVDEVNAALR-KGAHHVMV 235 (376)
Q Consensus 198 v~~~~~~~~~ipVi~n--GgI~s~~da~~~l~-~Gad~Vmi 235 (376)
+.++++. .++||++. +++.+..++.++++ .|+|+|.+
T Consensus 157 l~~v~~~-~~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~ 196 (334)
T PRK07565 157 LRAVKSA-VSIPVAVKLSPYFSNLANMAKRLDAAGADGLVL 196 (334)
T ss_pred HHHHHhc-cCCcEEEEeCCCchhHHHHHHHHHHcCCCeEEE
Confidence 6666654 48999976 55556677777666 99999876
|
|
| >PRK02615 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0089 Score=58.59 Aligned_cols=73 Identities=18% Similarity=0.145 Sum_probs=54.3
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017176 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
+.|+|+|.+.+-..... +. ..++..++.+..+++.. ++||++-||| +.+++.++++.|+|+|.++++++..+
T Consensus 258 ~~GaDYI~lGPvf~T~t----Kp--~~~~~Gle~l~~~~~~~-~iPv~AiGGI-~~~ni~~l~~~Ga~gVAvisaI~~a~ 329 (347)
T PRK02615 258 AEGADYIGVGPVFPTPT----KP--GKAPAGLEYLKYAAKEA-PIPWFAIGGI-DKSNIPEVLQAGAKRVAVVRAIMGAE 329 (347)
T ss_pred HcCCCEEEECCCcCCCC----CC--CCCCCCHHHHHHHHHhC-CCCEEEECCC-CHHHHHHHHHcCCcEEEEeHHHhCCC
Confidence 57999999875322110 00 11244578888877655 7999999999 58999999999999999999998754
Q ss_pred c
Q 017176 244 W 244 (376)
Q Consensus 244 ~ 244 (376)
.
T Consensus 330 d 330 (347)
T PRK02615 330 D 330 (347)
T ss_pred C
Confidence 4
|
|
| >PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.013 Score=55.50 Aligned_cols=93 Identities=15% Similarity=0.260 Sum_probs=62.0
Q ss_pred HHHHHHHHhcccC--ccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHH
Q 017176 122 VGEAMSVIAANTN--VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 199 (376)
Q Consensus 122 ~~eiv~~v~~~~~--~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~ 199 (376)
+.+.++.+|+... .++.|- .+++++.... + ++|+|.|-+..-+ .+.+.
T Consensus 168 i~~~v~~~k~~~p~~~~I~VE-------v~tleea~~A----~-~~GaDiI~LDn~~------------------~e~l~ 217 (273)
T PRK05848 168 LKEFIQHARKNIPFTAKIEIE-------CESLEEAKNA----M-NAGADIVMCDNMS------------------VEEIK 217 (273)
T ss_pred HHHHHHHHHHhCCCCceEEEE-------eCCHHHHHHH----H-HcCCCEEEECCCC------------------HHHHH
Confidence 4556666666543 345442 2356665432 2 5999988855421 33343
Q ss_pred HHHhh----CCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 200 ALLRD----FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 200 ~~~~~----~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
++++. .+++.+.++||| |++.+.++.++|+|.|.+|.....-|++
T Consensus 218 ~~v~~~~~~~~~~~ieAsGgI-t~~ni~~ya~~GvD~IsvG~l~~sa~~~ 266 (273)
T PRK05848 218 EVVAYRNANYPHVLLEASGNI-TLENINAYAKSGVDAISSGSLIHQATWI 266 (273)
T ss_pred HHHHHhhccCCCeEEEEECCC-CHHHHHHHHHcCCCEEEeChhhcCCCcc
Confidence 33332 357889999999 9999999999999999999977755654
|
|
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.074 Score=49.54 Aligned_cols=158 Identities=9% Similarity=-0.003 Sum_probs=95.8
Q ss_pred CCCChHHHHHHHHHhCCCcEEEecceeec-ccccccc---hhhhhhc----cC-C-CCCCEEEEe---cCCCHHHHHHHH
Q 017176 17 MDWTDNHYRTLARLISKHAWLYTEMLAAE-TIIYQQG---NLDRFLA----FS-P-EQHPIVLQI---GGSNLDNLAKAT 83 (376)
Q Consensus 17 ~~~td~~~r~~~~~~Gg~gl~~te~v~~~-~~~~~~~---~~~~~~~----~~-~-~~~p~~vQL---~g~~~~~~~~aa 83 (376)
.+.-|....++..+.| +..+++.-.... .+.+.+. ....++. +. . ...|+++-+ +|.+++...+.+
T Consensus 17 ~~ayD~~sA~i~e~aG-~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~~ 95 (240)
T cd06556 17 LTAYDYSMAKQFADAG-LNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFELA 95 (240)
T ss_pred ecCCCHHHHHHHHHcC-CCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHHH
Confidence 3777888888887776 777776543322 1212211 1111111 11 1 235777775 355778888999
Q ss_pred HHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCC-------------CCCcc
Q 017176 84 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV-------------DDHDS 150 (376)
Q Consensus 84 ~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~-------------~~~~~ 150 (376)
+++.++|+++|.|--+ ....+.++++++. +++|...+-.-. .....
T Consensus 96 ~~l~~aGa~gv~iED~--------------------~~~~~~i~ai~~a-~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~ 154 (240)
T cd06556 96 KTFMRAGAAGVKIEGG--------------------EWHIETLQMLTAA-AVPVIAHTGLTPQSVNTSGGDEGQYRGDEA 154 (240)
T ss_pred HHHHHcCCcEEEEcCc--------------------HHHHHHHHHHHHc-CCeEEEEeCCchhhhhccCCceeeccCHHH
Confidence 9998999999988421 1234556666654 367766544311 11123
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCC
Q 017176 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 216 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI 216 (376)
.+++++. ++.++++|+|.|.+++.+ .+.+.++.++ +++|+++||.=
T Consensus 155 ~~~ai~R-a~ay~~AGAd~i~~e~~~------------------~e~~~~i~~~-~~~P~~~~gag 200 (240)
T cd06556 155 GEQLIAD-ALAYAPAGADLIVMECVP------------------VELAKQITEA-LAIPLAGIGAG 200 (240)
T ss_pred HHHHHHH-HHHHHHcCCCEEEEcCCC------------------HHHHHHHHHh-CCCCEEEEecC
Confidence 5565554 456788999999998641 4556677766 48999988754
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0058 Score=63.35 Aligned_cols=78 Identities=13% Similarity=0.088 Sum_probs=58.2
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCH-----------HHHHHHHH
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV-----------DEVNAALR 227 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~-----------~da~~~l~ 227 (376)
++.+.+.|+|.|++--=++...+. .. ....++.+.++.++. .+||..-|||+|. +++++++.
T Consensus 273 a~~y~~~Gadel~~~Di~~~~~~~--~~----~~~~~~~i~~i~~~~-~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~ 345 (538)
T PLN02617 273 AGQYYKDGADEVAFLNITGFRDFP--LG----DLPMLEVLRRASENV-FVPLTVGGGIRDFTDANGRYYSSLEVASEYFR 345 (538)
T ss_pred HHHHHHcCCCEEEEEECCCCcCCc--cc----chhHHHHHHHHHhhC-CCCEEEcCCccccccccccccchHHHHHHHHH
Confidence 455678999999875333211111 00 112377888888764 8999999999998 66899999
Q ss_pred cCcCeeEEchHHhhCC
Q 017176 228 KGAHHVMVGRAAYQNP 243 (376)
Q Consensus 228 ~Gad~VmiGRa~l~~P 243 (376)
.|||-|.||++++.||
T Consensus 346 ~GadkV~i~s~Av~~~ 361 (538)
T PLN02617 346 SGADKISIGSDAVYAA 361 (538)
T ss_pred cCCCEEEEChHHHhCh
Confidence 9999999999999987
|
|
| >PRK04302 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0094 Score=54.86 Aligned_cols=152 Identities=15% Similarity=0.071 Sum_probs=85.8
Q ss_pred CCCEEEEecCCCH---HHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEE
Q 017176 64 QHPIVLQIGGSNL---DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 140 (376)
Q Consensus 64 ~~p~~vQL~g~~~---~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vK 140 (376)
+-|++.|=+.... ..=...++.+.++|+|+|-+.-. -|... .+.+.+.++..++ .++.+.+=
T Consensus 56 ~i~v~aq~~~~~~~G~~tg~~~~~~l~~~G~~~vii~~s------er~~~--------~~e~~~~v~~a~~-~Gl~~I~~ 120 (223)
T PRK04302 56 DIPVYAQHVDPVEPGSHTGHILPEAVKDAGAVGTLINHS------ERRLT--------LADIEAVVERAKK-LGLESVVC 120 (223)
T ss_pred CCeEEeccCCCCCCCCchhhhHHHHHHHcCCCEEEEecc------ccccC--------HHHHHHHHHHHHH-CCCeEEEE
Confidence 4577777442211 11113477788899999977521 01111 1235566666655 35433331
Q ss_pred ecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHH-HHHHHHhhCCCCeEEEecCCCCH
Q 017176 141 CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE-YYYALLRDFPDLTFTLNGGINTV 219 (376)
Q Consensus 141 iR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~-~v~~~~~~~~~ipVi~nGgI~s~ 219 (376)
. .+.+++. . +.+.|.+.|-+-++...-.|.. .. ...+.... .+..+++...++||++-|||.++
T Consensus 121 ----v---~~~~~~~----~-~~~~~~~~I~~~p~~~igt~~~-~~--~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~ 185 (223)
T PRK04302 121 ----V---NNPETSA----A-AAALGPDYVAVEPPELIGTGIP-VS--KAKPEVVEDAVEAVKKVNPDVKVLCGAGISTG 185 (223)
T ss_pred ----c---CCHHHHH----H-HhcCCCCEEEEeCccccccCCC-CC--cCCHHHHHHHHHHHHhccCCCEEEEECCCCCH
Confidence 1 1222322 2 2357888888766432111110 00 00111122 22333332347999999999999
Q ss_pred HHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 220 DEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 220 ~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
+++..+++.|+|||.+|++++..+.+
T Consensus 186 e~~~~~~~~gadGvlVGsa~l~~~~~ 211 (223)
T PRK04302 186 EDVKAALELGADGVLLASGVVKAKDP 211 (223)
T ss_pred HHHHHHHcCCCCEEEEehHHhCCcCH
Confidence 99999999999999999999987774
|
|
| >PRK03512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.014 Score=53.36 Aligned_cols=77 Identities=14% Similarity=0.113 Sum_probs=56.2
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
++.|+|++.+..-..... +. ...++..++.+.++.+...++||++-||| +.+++.+++++|+++|.+-++++..
T Consensus 119 ~~~gaDYi~lgpvf~T~t----K~-~~~~~~G~~~l~~~~~~~~~~PV~AiGGI-~~~ni~~l~~~Ga~GiAvisai~~~ 192 (211)
T PRK03512 119 LAARPSYIALGHVFPTQT----KQ-MPSAPQGLAQLARHVERLADYPTVAIGGI-SLERAPAVLATGVGSIAVVSAITQA 192 (211)
T ss_pred hhcCCCEEEECCccCCCC----CC-CCCCCCCHHHHHHHHHhcCCCCEEEECCC-CHHHHHHHHHcCCCEEEEhhHhhCC
Confidence 468999999876422110 00 11234457777777665457999999999 5999999999999999999999876
Q ss_pred Cch
Q 017176 243 PWY 245 (376)
Q Consensus 243 P~l 245 (376)
+..
T Consensus 193 ~d~ 195 (211)
T PRK03512 193 ADW 195 (211)
T ss_pred CCH
Confidence 664
|
|
| >TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.37 Score=46.17 Aligned_cols=207 Identities=14% Similarity=0.097 Sum_probs=115.5
Q ss_pred CCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeec-ccccccc---hhhhhhc-----cCCCCCCEEEEe---cCCC
Q 017176 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAE-TIIYQQG---NLDRFLA-----FSPEQHPIVLQI---GGSN 75 (376)
Q Consensus 8 ~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~-~~~~~~~---~~~~~~~-----~~~~~~p~~vQL---~g~~ 75 (376)
++.++++| ++-|.--.+++.+.| ...++|-..... .+...+- ....++. ....+.|+++-+ +|+.
T Consensus 13 ~~~~~~~p--g~~D~lSAri~e~aG-f~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~d~GyG~~ 89 (290)
T TIGR02321 13 SGRLFTAM--AAHNPLVAKLAEQAG-FGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSIPLIADIDTGFGNA 89 (290)
T ss_pred CCCCEEec--cccCHHHHHHHHHcC-CCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhccCCCEEEECCCCCCCc
Confidence 34577777 666777677777776 666665533222 2222221 1111111 123467888876 4666
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCc--cccccCCHHHHHHHHHHHhcc-cCccEEEEecCCCC-CCccH
Q 017176 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCF--GVSLMLDPKFVGEAMSVIAAN-TNVPVSVKCRIGVD-DHDSY 151 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~y--G~~l~~~~~~~~eiv~~v~~~-~~~pv~vKiR~g~~-~~~~~ 151 (376)
+ ...+.++.+.++|+.+|.|-=..- ++ +.+.+ |..-+-+++...+-|+++++. .+.++.|=-|...- .....
T Consensus 90 ~-~v~~tV~~~~~aGvagi~IEDq~~-pk--~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~g~ 165 (290)
T TIGR02321 90 V-NVHYVVPQYEAAGASAIVMEDKTF-PK--DTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQ 165 (290)
T ss_pred H-HHHHHHHHHHHcCCeEEEEeCCCC-Cc--ccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCCH
Confidence 6 588999999999999999964321 11 11211 212233555656666666554 34456665565321 11234
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEec---CCCCHHHHHHHHH
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNG---GINTVDEVNAALR 227 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nG---gI~s~~da~~~l~ 227 (376)
++.++. ++...++|+|.|-+++... +.+.+.++.++++ .+||+.+. ...+.++ +-+
T Consensus 166 deAI~R-a~aY~eAGAD~ifv~~~~~----------------~~~ei~~~~~~~~~p~pv~~~~~~~p~~~~~~---l~~ 225 (290)
T TIGR02321 166 QEAVRR-GQAYEEAGADAILIHSRQK----------------TPDEILAFVKSWPGKVPLVLVPTAYPQLTEAD---IAA 225 (290)
T ss_pred HHHHHH-HHHHHHcCCCEEEecCCCC----------------CHHHHHHHHHhcCCCCCeEEecCCCCCCCHHH---HHH
Confidence 566665 3456689999999997421 1355666776653 36886543 2333333 334
Q ss_pred cC-cCeeEEchHHhh
Q 017176 228 KG-AHHVMVGRAAYQ 241 (376)
Q Consensus 228 ~G-ad~VmiGRa~l~ 241 (376)
.| ...|..|..++.
T Consensus 226 lg~~~~v~~g~~~~~ 240 (290)
T TIGR02321 226 LSKVGIVIYGNHAIR 240 (290)
T ss_pred hcCCcEEEEChHHHH
Confidence 45 677877755543
|
This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2. |
| >PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.024 Score=54.23 Aligned_cols=93 Identities=15% Similarity=0.330 Sum_probs=61.2
Q ss_pred HHHHHHHHhcccC--ccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHH
Q 017176 122 VGEAMSVIAANTN--VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 199 (376)
Q Consensus 122 ~~eiv~~v~~~~~--~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~ 199 (376)
+.+.++.+|+..+ .+|.|- . ++.+++.+. + ++|+|.|-+..-+ .+.++
T Consensus 182 i~~av~~~r~~~~~~~~I~VE----v---~tleea~eA----~-~~GaD~I~LDn~~------------------~e~l~ 231 (288)
T PRK07428 182 IGEAITRIRQRIPYPLTIEVE----T---ETLEQVQEA----L-EYGADIIMLDNMP------------------VDLMQ 231 (288)
T ss_pred HHHHHHHHHHhCCCCCEEEEE----C---CCHHHHHHH----H-HcCCCEEEECCCC------------------HHHHH
Confidence 3455556666543 223332 1 345555432 2 6999999887322 22222
Q ss_pred HHH----hhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 200 ALL----RDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 200 ~~~----~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
+++ +..+++|+.++||| +.+.+.+..++|+|++.+|+....-|++
T Consensus 232 ~av~~~~~~~~~i~leAsGGI-t~~ni~~ya~tGvD~Isvgsl~~sa~~~ 280 (288)
T PRK07428 232 QAVQLIRQQNPRVKIEASGNI-TLETIRAVAETGVDYISSSAPITRSPWL 280 (288)
T ss_pred HHHHHHHhcCCCeEEEEECCC-CHHHHHHHHHcCCCEEEEchhhhCCCcc
Confidence 322 22468999999999 7999999999999999999988867764
|
|
| >KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.013 Score=57.50 Aligned_cols=128 Identities=17% Similarity=0.201 Sum_probs=77.9
Q ss_pred HHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHH
Q 017176 82 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYK 160 (376)
Q Consensus 82 aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~ 160 (376)
...++.++|.|.|-|..+ . | +...-.++++.|++.. ...|.. | +..+-+... .
T Consensus 255 rl~ll~~aGvdvviLDSS----------q-G-----nS~~qiemik~iK~~yP~l~Via----G--NVVT~~qa~----n 308 (503)
T KOG2550|consen 255 RLDLLVQAGVDVVILDSS----------Q-G-----NSIYQLEMIKYIKETYPDLQIIA----G--NVVTKEQAA----N 308 (503)
T ss_pred HHHHhhhcCCcEEEEecC----------C-C-----cchhHHHHHHHHHhhCCCceeec----c--ceeeHHHHH----H
Confidence 445677889999988531 1 3 2345678888888765 333322 1 111222221 1
Q ss_pred HhhcCCccEEEEccCc------cccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeE
Q 017176 161 VSSLSPTRHFIIHSRK------ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM 234 (376)
Q Consensus 161 ~~e~~Gvd~I~vh~r~------~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vm 234 (376)
+-++|+|.+.|--+. +...+.+.++. ..-+ .+.+.+.++ .+|||+.|||.+.-++.+++..||+.||
T Consensus 309 -LI~aGaDgLrVGMGsGSiCiTqevma~GrpQ~----TAVy-~va~~A~q~-gvpviADGGiq~~Ghi~KAl~lGAstVM 381 (503)
T KOG2550|consen 309 -LIAAGADGLRVGMGSGSICITQKVMACGRPQG----TAVY-KVAEFANQF-GVPCIADGGIQNVGHVVKALGLGASTVM 381 (503)
T ss_pred -HHHccCceeEeccccCceeeeceeeeccCCcc----cchh-hHHHHHHhc-CCceeecCCcCccchhHhhhhcCchhhe
Confidence 236999999985432 21111111111 1112 233444555 8999999999999999999999999999
Q ss_pred EchHHhhC
Q 017176 235 VGRAAYQN 242 (376)
Q Consensus 235 iGRa~l~~ 242 (376)
+|--+-+.
T Consensus 382 mG~lLAgt 389 (503)
T KOG2550|consen 382 MGGLLAGT 389 (503)
T ss_pred ecceeeee
Confidence 99765544
|
|
| >PRK06512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.013 Score=53.98 Aligned_cols=74 Identities=11% Similarity=0.059 Sum_probs=54.5
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
++.|+|+|.+..-.. . + +. ..+|...+.+..+++. .++||++-||| +.+++.+++++|||+|.+-++++..
T Consensus 128 ~~~gaDYv~~Gpv~t--~--t-K~--~~~p~gl~~l~~~~~~-~~iPvvAIGGI-~~~n~~~~~~~GA~giAvisai~~~ 198 (221)
T PRK06512 128 GELRPDYLFFGKLGA--D--N-KP--EAHPRNLSLAEWWAEM-IEIPCIVQAGS-DLASAVEVAETGAEFVALERAVFDA 198 (221)
T ss_pred hhcCCCEEEECCCCC--C--C-CC--CCCCCChHHHHHHHHh-CCCCEEEEeCC-CHHHHHHHHHhCCCEEEEhHHhhCC
Confidence 368999999865321 1 1 10 1233445666666654 48999999999 9999999999999999999999876
Q ss_pred Cch
Q 017176 243 PWY 245 (376)
Q Consensus 243 P~l 245 (376)
++.
T Consensus 199 ~dp 201 (221)
T PRK06512 199 HDP 201 (221)
T ss_pred CCH
Confidence 653
|
|
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.15 Score=47.08 Aligned_cols=155 Identities=14% Similarity=0.159 Sum_probs=89.9
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEE--EecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe
Q 017176 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEI--NLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 141 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~I--eiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 141 (376)
..++.+.|...|...+.+-.++++++|.|.+ |+-=|.-+++. .|| | .+++++++ +.|+.|-+
T Consensus 12 ~~~I~pSil~ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVPNi----tfG------p----~~i~~i~~--~~~~DvHL 75 (228)
T PRK08091 12 QQPISVGILASNWLKFNETLTTLSENQLRLLHFDIADGQFSPFF----TVG------A----IAIKQFPT--HCFKDVHL 75 (228)
T ss_pred CCeEEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCcc----ccC------H----HHHHHhCC--CCCEEEEe
Confidence 4568889999999999999999999998875 44334333322 144 2 34555553 45655543
Q ss_pred cCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCcc----------ccCCC--------CCC------------------
Q 017176 142 RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA----------LLNGI--------SPA------------------ 185 (376)
Q Consensus 142 R~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~----------~~~g~--------~~~------------------ 185 (376)
=. .+ .++.++ . +.++|+|.|++|.-.. ...|. .+.
T Consensus 76 Mv--~~---P~~~i~---~-~~~aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLi 146 (228)
T PRK08091 76 MV--RD---QFEVAK---A-CVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQI 146 (228)
T ss_pred cc--CC---HHHHHH---H-HHHhCCCEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEE
Confidence 32 22 222222 2 2357888888875310 00111 000
Q ss_pred -------CCCCCCcccHHHHHHH---HhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017176 186 -------ENRTIPPLKYEYYYAL---LRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 186 -------~~~~~~~~~~~~v~~~---~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
.+...-+..++-+.++ +++. .++.|-..||| +.+.+.++.+.|||.+.+|+++..++.
T Consensus 147 MtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI-~~~ti~~l~~aGaD~~V~GSalF~~~d 215 (228)
T PRK08091 147 LTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSM-TLELASYLKQHQIDWVVSGSALFSQGE 215 (228)
T ss_pred EEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHHCCCCEEEEChhhhCCCC
Confidence 0000001112233333 2222 25668899999 488999999999999999999877666
|
|
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.009 Score=58.48 Aligned_cols=63 Identities=22% Similarity=0.324 Sum_probs=45.5
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
.++|+|.|.|..-. |++. --.+.++.+++.++++||| .|.|-|.+.++.++++|||+|-+|=|
T Consensus 117 ~~agvD~ivID~a~----g~s~--------~~~~~ik~ik~~~~~~~vi-aGNV~T~e~a~~L~~aGad~vkVGiG 179 (352)
T PF00478_consen 117 VEAGVDVIVIDSAH----GHSE--------HVIDMIKKIKKKFPDVPVI-AGNVVTYEGAKDLIDAGADAVKVGIG 179 (352)
T ss_dssp HHTT-SEEEEE-SS----TTSH--------HHHHHHHHHHHHSTTSEEE-EEEE-SHHHHHHHHHTT-SEEEESSS
T ss_pred HHcCCCEEEccccC----ccHH--------HHHHHHHHHHHhCCCceEE-ecccCCHHHHHHHHHcCCCEEEEecc
Confidence 35899999996432 2111 0146778888889889988 57799999999999999999998855
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2 | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0074 Score=53.60 Aligned_cols=69 Identities=19% Similarity=0.153 Sum_probs=49.5
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHH
Q 017176 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~ 239 (376)
.+.|+|++.+..--.... . +..++..++.+.++++.. ++||++-||| +++++.+++++|+++|.+-|++
T Consensus 112 ~~~g~dYv~~gpvf~T~s-----k-~~~~~~g~~~l~~~~~~~-~~pv~AlGGI-~~~~i~~l~~~Ga~gvAvi~aI 180 (180)
T PF02581_consen 112 EELGADYVFLGPVFPTSS-----K-PGAPPLGLDGLREIARAS-PIPVYALGGI-TPENIPELREAGADGVAVISAI 180 (180)
T ss_dssp HHCTTSEEEEETSS--SS-----S-SS-TTCHHHHHHHHHHHT-SSCEEEESS---TTTHHHHHHTT-SEEEESHHH
T ss_pred hhcCCCEEEECCccCCCC-----C-ccccccCHHHHHHHHHhC-CCCEEEEcCC-CHHHHHHHHHcCCCEEEEEeeC
Confidence 468999999876422111 0 112566688888888775 7999999999 7999999999999999998874
|
5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D .... |
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.038 Score=51.87 Aligned_cols=131 Identities=15% Similarity=0.100 Sum_probs=80.9
Q ss_pred HHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCcc-EEEEecCCCCCC-ccHHHHHHHH
Q 017176 81 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP-VSVKCRIGVDDH-DSYNQLCDFI 158 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~p-v~vKiR~g~~~~-~~~~~~~~~i 158 (376)
-.|++++++|||.|=. |.....+. .| |-....-..+.+...+++|++.++.| |++-+- +... .+.++.++..
T Consensus 23 ~sA~l~e~aG~d~i~v--Gds~~~~~-lG-~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~--fg~y~~~~~~av~~a 96 (254)
T cd06557 23 PTAKLADEAGVDVILV--GDSLGMVV-LG-YDSTLPVTLDEMIYHTRAVRRGAPRALVVADMP--FGSYQTSPEQALRNA 96 (254)
T ss_pred HHHHHHHHcCCCEEEE--CHHHHHHH-cC-CCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCC--CCcccCCHHHHHHHH
Confidence 3678889999999953 43322111 11 22222345678888889999888889 666553 2222 2356666666
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEE-----------EecCCC----CHH---
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT-----------LNGGIN----TVD--- 220 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi-----------~nGgI~----s~~--- 220 (376)
.++++++|+++|.+.++.. ..+.++.+++. .|||+ ..||.. +.+
T Consensus 97 ~r~~~~aGa~aVkiEd~~~----------------~~~~I~al~~a--gipV~gHiGL~pq~~~~~gg~~~~grt~~~a~ 158 (254)
T cd06557 97 ARLMKEAGADAVKLEGGAE----------------VAETIRALVDA--GIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAE 158 (254)
T ss_pred HHHHHHhCCeEEEEcCcHH----------------HHHHHHHHHHc--CCCeeccccccceeeeccCCceeccCCHHHHH
Confidence 7778789999999987531 03445555543 78887 456542 332
Q ss_pred ----HHHHHHHcCcCeeEE
Q 017176 221 ----EVNAALRKGAHHVMV 235 (376)
Q Consensus 221 ----da~~~l~~Gad~Vmi 235 (376)
++..+.+.|||++.+
T Consensus 159 ~~i~ra~a~~~AGA~~i~l 177 (254)
T cd06557 159 RLLEDALALEEAGAFALVL 177 (254)
T ss_pred HHHHHHHHHHHCCCCEEEE
Confidence 223333479999876
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. |
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.052 Score=50.69 Aligned_cols=147 Identities=15% Similarity=0.108 Sum_probs=81.3
Q ss_pred HHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHH
Q 017176 81 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 160 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~ 160 (376)
-.|++++++|||.|=+...+-.......| ..+-..+.+.+.++.|...+..|+++-+..|+.+.. ++.+.+.+
T Consensus 20 ~sA~~~e~~G~~ai~~s~~~~~~s~G~pD----~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~---~~~~~v~~ 92 (243)
T cd00377 20 LSARLAERAGFKAIYTSGAGVAASLGLPD----GGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNAL---NVARTVRE 92 (243)
T ss_pred HHHHHHHHcCCCEEEeccHHHHHhcCCCC----CCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHH---HHHHHHHH
Confidence 36778889999999885432221111111 122355778888888888889999999999876533 33333333
Q ss_pred HhhcCCccEEEEccCcc-ccCCCCCCCCCCCCcc-cHHHHHHHHhhC---CCCeEEEecCC-----CCHHHHHH----HH
Q 017176 161 VSSLSPTRHFIIHSRKA-LLNGISPAENRTIPPL-KYEYYYALLRDF---PDLTFTLNGGI-----NTVDEVNA----AL 226 (376)
Q Consensus 161 ~~e~~Gvd~I~vh~r~~-~~~g~~~~~~~~~~~~-~~~~v~~~~~~~---~~ipVi~nGgI-----~s~~da~~----~l 226 (376)
+ .++|++.|.+-.... ...|..+. ...++.- ..+.++..++.. ++++|++--|. .+.+++.+ +.
T Consensus 93 ~-~~~G~~gv~iED~~~~k~~g~~~~-~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~ 170 (243)
T cd00377 93 L-EEAGAAGIHIEDQVGPKKCGHHGG-KVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYA 170 (243)
T ss_pred H-HHcCCEEEEEecCCCCccccCCCC-CeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHH
Confidence 3 459999999954432 11111110 0111110 112233333222 35677766332 23444432 33
Q ss_pred HcCcCeeEEc
Q 017176 227 RKGAHHVMVG 236 (376)
Q Consensus 227 ~~Gad~VmiG 236 (376)
+.|||+|++=
T Consensus 171 ~AGAD~v~v~ 180 (243)
T cd00377 171 EAGADGIFVE 180 (243)
T ss_pred HcCCCEEEeC
Confidence 4799999984
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.035 Score=50.69 Aligned_cols=124 Identities=15% Similarity=0.186 Sum_probs=78.2
Q ss_pred HHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecC-C---C--------CCCccH
Q 017176 85 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRI-G---V--------DDHDSY 151 (376)
Q Consensus 85 ~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~-g---~--------~~~~~~ 151 (376)
.+-.+|+|-|.||.. ...+|+++.++-+..-..+ -+.+..|-+. | | .+...+
T Consensus 91 ~ll~aGADKVSINsa---------------Av~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~ 155 (256)
T COG0107 91 KLLRAGADKVSINSA---------------AVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGL 155 (256)
T ss_pred HHHHcCCCeeeeChh---------------HhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCc
Confidence 455689999999831 2357887777777654332 2334444432 1 1 111111
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCcc--ccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-c
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-K 228 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~--~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~ 228 (376)
+.+++ ++..++.|+--|.+..-.+ ...|+ +.++++.+... ++||||++||.-++++..+++. +
T Consensus 156 -d~~~W-a~~~e~~GAGEIlLtsmD~DGtk~Gy-----------Dl~l~~~v~~~-v~iPvIASGGaG~~ehf~eaf~~~ 221 (256)
T COG0107 156 -DAVEW-AKEVEELGAGEILLTSMDRDGTKAGY-----------DLELTRAVREA-VNIPVIASGGAGKPEHFVEAFTEG 221 (256)
T ss_pred -CHHHH-HHHHHHcCCceEEEeeecccccccCc-----------CHHHHHHHHHh-CCCCEEecCCCCcHHHHHHHHHhc
Confidence 23333 3345789998888875432 22332 26677777665 5999999999999999999998 6
Q ss_pred CcCeeEEch
Q 017176 229 GAHHVMVGR 237 (376)
Q Consensus 229 Gad~VmiGR 237 (376)
.||++..+.
T Consensus 222 ~adAaLAAs 230 (256)
T COG0107 222 KADAALAAS 230 (256)
T ss_pred CccHHHhhh
Confidence 699876544
|
|
| >cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4 | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.075 Score=52.65 Aligned_cols=124 Identities=9% Similarity=-0.044 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC--ccEEEEecCCCCCCccHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~--~pv~vKiR~g~~~~~~~~ 152 (376)
+++++.+.++.+.+.||+.|.|..| +. ..++.-.+.++++|+.++ +++.+-..-+|+ .+
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik~~------------~~---~~~~~di~~i~~vR~~~G~~~~l~vDan~~~~----~~ 203 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLHPW------------GP---GVVRRDLKACLAVREAVGPDMRLMHDGAHWYS----RA 203 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecC------------Cc---hhHHHHHHHHHHHHHHhCCCCeEEEECCCCcC----HH
Confidence 7889999999888999999988421 10 124667788999998874 566665554554 34
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCC-HHHHHHHHH-cCc
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT-VDEVNAALR-KGA 230 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s-~~da~~~l~-~Ga 230 (376)
+.+++ .+.+++.++.++. . .+++.+++..+++++. .++||.+...+.+ ++++.++++ ..+
T Consensus 204 ~A~~~-~~~l~~~~l~~iE----e------------P~~~~d~~~~~~l~~~-~~ipIa~~E~~~~~~~~~~~~i~~~a~ 265 (368)
T cd03329 204 DALRL-GRALEELGFFWYE----D------------PLREASISSYRWLAEK-LDIPILGTEHSRGALESRADWVLAGAT 265 (368)
T ss_pred HHHHH-HHHhhhcCCCeEe----C------------CCCchhHHHHHHHHhc-CCCCEEccCcccCcHHHHHHHHHhCCC
Confidence 44444 3445667776655 0 1122235666677665 4899988888999 999999998 568
Q ss_pred CeeEE
Q 017176 231 HHVMV 235 (376)
Q Consensus 231 d~Vmi 235 (376)
|.|++
T Consensus 266 d~v~~ 270 (368)
T cd03329 266 DFLRA 270 (368)
T ss_pred CEEec
Confidence 88877
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >PRK06852 aldolase; Validated | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.3 Score=46.98 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=65.6
Q ss_pred HHHHHHHHHhcccCccEEEEe-cCC--CCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHH
Q 017176 121 FVGEAMSVIAANTNVPVSVKC-RIG--VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 197 (376)
Q Consensus 121 ~~~eiv~~v~~~~~~pv~vKi-R~g--~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~ 197 (376)
.+.+++++. +..++|+.+=+ ..| ..+.. -.+++..++++..+.|+|.|-+---+....| ..+.
T Consensus 155 ~l~~v~~ea-~~~GlPll~~~yprG~~i~~~~-~~~~ia~aaRiaaELGADIVKv~y~~~~~~g------------~~e~ 220 (304)
T PRK06852 155 EAAQIIYEA-HKHGLIAVLWIYPRGKAVKDEK-DPHLIAGAAGVAACLGADFVKVNYPKKEGAN------------PAEL 220 (304)
T ss_pred HHHHHHHHH-HHhCCcEEEEeeccCcccCCCc-cHHHHHHHHHHHHHHcCCEEEecCCCcCCCC------------CHHH
Confidence 344444443 23588977521 123 12212 2245556677888899999987532211001 1345
Q ss_pred HHHHHhhCCCCeEEEecCCC-CHHH----HHHHHH-cCcCeeEEchHHhhCCc
Q 017176 198 YYALLRDFPDLTFTLNGGIN-TVDE----VNAALR-KGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 198 v~~~~~~~~~ipVi~nGgI~-s~~d----a~~~l~-~Gad~VmiGRa~l~~P~ 244 (376)
+.++++....+||+..||=. +.++ +.++++ .||.||.+||=....|.
T Consensus 221 f~~vv~~~g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~~ 273 (304)
T PRK06852 221 FKEAVLAAGRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQKPL 273 (304)
T ss_pred HHHHHHhCCCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhhcCCC
Confidence 56666654368999998866 3333 344556 79999999999887754
|
|
| >PRK08227 autoinducer 2 aldolase; Validated | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.13 Score=48.49 Aligned_cols=149 Identities=17% Similarity=0.176 Sum_probs=88.9
Q ss_pred CCCCEEEEecCCC-------HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccC-CHHHHHHHHHHHhcccC
Q 017176 63 EQHPIVLQIGGSN-------LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLML-DPKFVGEAMSVIAANTN 134 (376)
Q Consensus 63 ~~~p~~vQL~g~~-------~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~-~~~~~~eiv~~v~~~~~ 134 (376)
.+.|++++|.++. .+.+....+.+.+.|+|+|-++. . .|+..+. ..+.+.+++++. +..+
T Consensus 73 ~~~~lil~ls~~t~~~~~~~~~~l~~sVeeAvrlGAdAV~~~v-----~------~Gs~~E~~~l~~l~~v~~ea-~~~G 140 (264)
T PRK08227 73 TNKPVVLRASGGNSILKELSNEAVAVDMEDAVRLNACAVAAQV-----F------IGSEYEHQSIKNIIQLVDAG-LRYG 140 (264)
T ss_pred CCCcEEEEEcCCCCCCCCCCcccceecHHHHHHCCCCEEEEEE-----e------cCCHHHHHHHHHHHHHHHHH-HHhC
Confidence 3567888888642 23344445667788999887653 1 1222111 112334444442 2458
Q ss_pred ccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEec
Q 017176 135 VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 214 (376)
Q Consensus 135 ~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nG 214 (376)
+|+.+=...|-...++. +++...+++..+.|+|.|-+--- -+.+.++++.. .+||+..|
T Consensus 141 ~Plla~~prG~~~~~~~-~~ia~aaRiaaELGADiVK~~y~-------------------~~~f~~vv~a~-~vPVviaG 199 (264)
T PRK08227 141 MPVMAVTAVGKDMVRDA-RYFSLATRIAAEMGAQIIKTYYV-------------------EEGFERITAGC-PVPIVIAG 199 (264)
T ss_pred CcEEEEecCCCCcCchH-HHHHHHHHHHHHHcCCEEecCCC-------------------HHHHHHHHHcC-CCcEEEeC
Confidence 99877333332222222 36666778888899998874310 03345666654 79999999
Q ss_pred CCCC-HHHHH----HHHHcCcCeeEEchHHhhCCc
Q 017176 215 GINT-VDEVN----AALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 215 gI~s-~~da~----~~l~~Gad~VmiGRa~l~~P~ 244 (376)
|=.. .+++. ++++.||.||.+||=....|.
T Consensus 200 G~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~ 234 (264)
T PRK08227 200 GKKLPERDALEMCYQAIDEGASGVDMGRNIFQSEH 234 (264)
T ss_pred CCCCCHHHHHHHHHHHHHcCCceeeechhhhccCC
Confidence 9763 33343 445589999999999887755
|
|
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.031 Score=54.46 Aligned_cols=95 Identities=17% Similarity=0.215 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHH
Q 017176 119 PKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY 198 (376)
Q Consensus 119 ~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v 198 (376)
++...+.++.++.... +-.-++..+ +. .+.+..++ ++|++.|.++... |.+ ....+.+
T Consensus 69 ~~~~~~~i~~vk~~l~----v~~~~~~~~--~~---~~~~~~l~-eagv~~I~vd~~~----G~~--------~~~~~~i 126 (325)
T cd00381 69 IEEQAEEVRKVKGRLL----VGAAVGTRE--DD---KERAEALV-EAGVDVIVIDSAH----GHS--------VYVIEMI 126 (325)
T ss_pred HHHHHHHHHHhccCce----EEEecCCCh--hH---HHHHHHHH-hcCCCEEEEECCC----CCc--------HHHHHHH
Confidence 3555666777664322 222233221 11 22223333 5899999886422 111 0115667
Q ss_pred HHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017176 199 YALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 199 ~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
+++++..+++||++ |.+.|.+++..+++.|||+|.+|
T Consensus 127 ~~ik~~~p~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 127 KFIKKKYPNVDVIA-GNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred HHHHHHCCCceEEE-CCCCCHHHHHHHHhcCCCEEEEC
Confidence 77777766788887 99999999999999999999984
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >PRK09722 allulose-6-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.17 Score=46.78 Aligned_cols=151 Identities=15% Similarity=0.224 Sum_probs=88.2
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHCCCCEE--EecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC
Q 017176 66 PIVLQIGGSNLDNLAKATELANAYNYDEI--NLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 143 (376)
Q Consensus 66 p~~vQL~g~~~~~~~~aa~~~~~~G~d~I--eiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~ 143 (376)
.+.+.|...|...+.+-.+.+++ |+|.+ |+-=|.-+++. .|| -++++++++.++.|+.|-+=.
T Consensus 4 ~I~pSil~ad~~~l~~el~~l~~-g~d~lH~DiMDG~FVPN~----tfg----------~~~i~~ir~~t~~~~DvHLMv 68 (229)
T PRK09722 4 KISPSLMCMDLLKFKEQIEFLNS-KADYFHIDIMDGHFVPNL----TLS----------PFFVSQVKKLASKPLDVHLMV 68 (229)
T ss_pred eEEeehhhcCHHHHHHHHHHHHh-CCCEEEEecccCccCCCc----ccC----------HHHHHHHHhcCCCCeEEEEEe
Confidence 36778888899899999998888 88875 44334333321 144 356777887777787765443
Q ss_pred CCCCCccHHHHHHHHHHHhhcCCccEEEEccCcc--c---------cCCC------CCCC--------------------
Q 017176 144 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA--L---------LNGI------SPAE-------------------- 186 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~--~---------~~g~------~~~~-------------------- 186 (376)
.+ .++.++ .+ .++|+|.|++|.-.. . ..|. .+..
T Consensus 69 --~~---P~~~i~---~~-~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV 139 (229)
T PRK09722 69 --TD---PQDYID---QL-ADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTV 139 (229)
T ss_pred --cC---HHHHHH---HH-HHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEE
Confidence 22 222222 22 257899999886421 0 0010 0000
Q ss_pred -----CCCCCcccHHHHHHHH---hhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH-Hhh
Q 017176 187 -----NRTIPPLKYEYYYALL---RDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA-AYQ 241 (376)
Q Consensus 187 -----~~~~~~~~~~~v~~~~---~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa-~l~ 241 (376)
+...-+..++-+++++ ++. .++.|-..|||+ .+.+.++.+.|||.+.+|+. +..
T Consensus 140 ~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~~aGad~~V~Gss~iF~ 203 (229)
T PRK09722 140 DPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLMEAGADVFIVGTSGLFN 203 (229)
T ss_pred cCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcCCCEEEEChHHHcC
Confidence 0000000122233332 222 246688999995 78898999999999999976 544
|
|
| >PRK14057 epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.35 Score=45.32 Aligned_cols=156 Identities=16% Similarity=0.174 Sum_probs=90.4
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHHHCCCCEE--EecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEE
Q 017176 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEI--NLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 140 (376)
Q Consensus 63 ~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~I--eiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vK 140 (376)
...++.+.|...|...+.+..+.++++|+|.+ |+-=|.-+++. .|| | ++++++++ +.|+.|-
T Consensus 18 ~~~~IspSil~aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPNi----tfG------p----~~i~~i~~--~~p~DvH 81 (254)
T PRK14057 18 ASYPLSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQF----TVG------P----WAVGQLPQ--TFIKDVH 81 (254)
T ss_pred cCCceEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCccCCcc----ccC------H----HHHHHhcc--CCCeeEE
Confidence 35678999999999999999999999998875 44334333322 145 3 34455554 4565554
Q ss_pred ecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCcc----------ccCCC----------CC-CCCCCCCc-------
Q 017176 141 CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA----------LLNGI----------SP-AENRTIPP------- 192 (376)
Q Consensus 141 iR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~----------~~~g~----------~~-~~~~~~~~------- 192 (376)
+=. .+ .+..++ . +.++|+|.|++|.-.. ...|. .+ +-++..+.
T Consensus 82 LMV--~~---P~~~i~---~-~~~aGad~It~H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l 152 (254)
T PRK14057 82 LMV--AD---QWTAAQ---A-CVKAGAHCITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPIL 152 (254)
T ss_pred eee--CC---HHHHHH---H-HHHhCCCEEEEeeccccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHH
Confidence 332 22 222222 1 2257888888885421 00121 00 00000000
Q ss_pred ----------------------ccHHHHHH---HHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017176 193 ----------------------LKYEYYYA---LLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 193 ----------------------~~~~~v~~---~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
..++-+.+ .+++. .++.|-..||| +.+.+.++.+.|||.+.+|+++..++.
T Consensus 153 ~~vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI-~~~ti~~l~~aGad~~V~GSalF~~~d 229 (254)
T PRK14057 153 SDVEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSL-TQDQLPSLIAQGIDRVVSGSALFRDDR 229 (254)
T ss_pred HhCCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHHCCCCEEEEChHhhCCCC
Confidence 00122222 22222 24678899999 677898999999999999999876655
|
|
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=96.31 E-value=0.12 Score=45.95 Aligned_cols=111 Identities=14% Similarity=0.112 Sum_probs=66.1
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCC-----ccHHHH
Q 017176 80 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH-----DSYNQL 154 (376)
Q Consensus 80 ~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~-----~~~~~~ 154 (376)
...|+-+++.|+.+|-+|. .+-++++++.+++||.==+...+++. .++++.
T Consensus 2 ~~mA~Aa~~gGA~giR~~~------------------------~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev 57 (192)
T PF04131_consen 2 ARMAKAAEEGGAVGIRANG------------------------VEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEV 57 (192)
T ss_dssp HHHHHHHHHCT-SEEEEES------------------------HHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHH
T ss_pred HHHHHHHHHCCceEEEcCC------------------------HHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHH
Confidence 4566777788888887761 13367789999999862222223321 245553
Q ss_pred HHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeE
Q 017176 155 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM 234 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vm 234 (376)
. .++ ++|+|.|.+.+-.+.. |....+.+.++++++ +..-.||.|.+++..+.+.|+|.|.
T Consensus 58 ~----~l~-~aGadIIAlDaT~R~R-----------p~~l~~li~~i~~~~----~l~MADist~ee~~~A~~~G~D~I~ 117 (192)
T PF04131_consen 58 D----ALA-EAGADIIALDATDRPR-----------PETLEELIREIKEKY----QLVMADISTLEEAINAAELGFDIIG 117 (192)
T ss_dssp H----HHH-HCT-SEEEEE-SSSS------------SS-HHHHHHHHHHCT----SEEEEE-SSHHHHHHHHHTT-SEEE
T ss_pred H----HHH-HcCCCEEEEecCCCCC-----------CcCHHHHHHHHHHhC----cEEeeecCCHHHHHHHHHcCCCEEE
Confidence 2 233 6999999998744311 111245677777654 6677899999999999999999775
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.17 Score=51.51 Aligned_cols=146 Identities=16% Similarity=0.140 Sum_probs=85.7
Q ss_pred HHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC------------CCCCC
Q 017176 81 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI------------GVDDH 148 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~------------g~~~~ 148 (376)
+.|+.. +.|+++|-+. +....|||++. -++.+++.+++||..|==+ |-|-.
T Consensus 74 ~~a~~y-~~gA~aiSVl--------Te~~~F~Gs~~--------~l~~vr~~v~~PvLrKDFiid~~QI~ea~~~GADav 136 (454)
T PRK09427 74 EIARVY-KHYASAISVL--------TDEKYFQGSFD--------FLPIVRAIVTQPILCKDFIIDPYQIYLARYYGADAI 136 (454)
T ss_pred HHHHHH-HcCCeEEEEe--------cCcCcCCCCHH--------HHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCch
Confidence 444444 6678888775 23445776653 3456677788999887221 11110
Q ss_pred ------ccHHHHHHHHHHHhhcCCccEE-EEccCcccc----CC--CCCCCCCCCCc--ccHHHHHHHHhhCC-CCeEEE
Q 017176 149 ------DSYNQLCDFIYKVSSLSPTRHF-IIHSRKALL----NG--ISPAENRTIPP--LKYEYYYALLRDFP-DLTFTL 212 (376)
Q Consensus 149 ------~~~~~~~~~i~~~~e~~Gvd~I-~vh~r~~~~----~g--~~~~~~~~~~~--~~~~~v~~~~~~~~-~ipVi~ 212 (376)
-+-+++.++ ...+.+.|.+.+ .||...... .| .-+-+++.... .+.....++....| ++.+|+
T Consensus 137 LLI~~~L~~~~l~~l-~~~a~~lGl~~lvEvh~~~El~~al~~~a~iiGiNnRdL~t~~vd~~~~~~l~~~ip~~~~~vs 215 (454)
T PRK09427 137 LLMLSVLDDEQYRQL-AAVAHSLNMGVLTEVSNEEELERAIALGAKVIGINNRNLRDLSIDLNRTRELAPLIPADVIVIS 215 (454)
T ss_pred hHHHHhCCHHHHHHH-HHHHHHcCCcEEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCCCCcEEEE
Confidence 001122222 234456787766 577653110 01 01122333322 23444455555554 577899
Q ss_pred ecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 213 NGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 213 nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
-+||.|++|+..+.. |+|+|.||.+++..|..
T Consensus 216 eSGI~t~~d~~~~~~-~~davLiG~~lm~~~d~ 247 (454)
T PRK09427 216 ESGIYTHAQVRELSP-FANGFLIGSSLMAEDDL 247 (454)
T ss_pred eCCCCCHHHHHHHHh-cCCEEEECHHHcCCCCH
Confidence 999999999999755 79999999999999885
|
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.14 Score=48.99 Aligned_cols=144 Identities=11% Similarity=0.056 Sum_probs=74.9
Q ss_pred HHHHHHHHCC-CCEEEecCCCCC-------ccccCCCCccccccCC-------HHHHHHHHHHHhcccCccEEEEecCCC
Q 017176 81 KATELANAYN-YDEINLNCGCPS-------PKVAGHGCFGVSLMLD-------PKFVGEAMSVIAANTNVPVSVKCRIGV 145 (376)
Q Consensus 81 ~aa~~~~~~G-~d~IeiN~gcP~-------~~v~r~g~yG~~l~~~-------~~~~~eiv~~v~~~~~~pv~vKiR~g~ 145 (376)
+..+.+.+.| |.+|.+-.=.+. +...+.. .++.|. ++...+-+...++..+.|+.+-+...
T Consensus 24 ~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~---~~~~n~~g~~~~g~~~~~~~~~~~~~~~~~p~ivsi~g~- 99 (296)
T cd04740 24 EELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETP---GGMLNAIGLQNPGVEAFLEELLPWLREFGTPVIASIAGS- 99 (296)
T ss_pred HHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecC---cceeeecCCCCcCHHHHHHHHHHHhhcCCCcEEEEEecC-
Confidence 3444555566 999988653322 2211211 222222 23333444444444578888877642
Q ss_pred CCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE--ecCCCCHHHHH
Q 017176 146 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL--NGGINTVDEVN 223 (376)
Q Consensus 146 ~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~--nGgI~s~~da~ 223 (376)
+.++..+. ++.++++|+|+|.+|-......+. +......+....+.+.++++. .++||+. +.++.+..++.
T Consensus 100 ----~~~~~~~~-a~~~~~~G~d~iElN~~cP~~~~~-g~~~~~~~~~~~eiv~~vr~~-~~~Pv~vKl~~~~~~~~~~a 172 (296)
T cd04740 100 ----TVEEFVEV-AEKLADAGADAIELNISCPNVKGG-GMAFGTDPEAVAEIVKAVKKA-TDVPVIVKLTPNVTDIVEIA 172 (296)
T ss_pred ----CHHHHHHH-HHHHHHcCCCEEEEECCCCCCCCC-cccccCCHHHHHHHHHHHHhc-cCCCEEEEeCCCchhHHHHH
Confidence 23344443 445567899999998654432221 111111112223455555554 3788874 44555555544
Q ss_pred HHH-HcCcCeeEE
Q 017176 224 AAL-RKGAHHVMV 235 (376)
Q Consensus 224 ~~l-~~Gad~Vmi 235 (376)
+.+ +.|+|+|.+
T Consensus 173 ~~~~~~G~d~i~~ 185 (296)
T cd04740 173 RAAEEAGADGLTL 185 (296)
T ss_pred HHHHHcCCCEEEE
Confidence 444 489999865
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.43 Score=43.54 Aligned_cols=181 Identities=13% Similarity=0.157 Sum_probs=97.2
Q ss_pred CCCCChHHHHHHHHHhCCCcEEEecceeeccccc--ccchhhhhhc-cCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCC
Q 017176 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIY--QQGNLDRFLA-FSPEQHPIVLQIGGSNLDNLAKATELANAYNYD 92 (376)
Q Consensus 16 M~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~--~~~~~~~~~~-~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d 92 (376)
.+|+++..-..++.++| ++++. ++....--+ .......+.. +.+.-.+++| +...+++.. .+.+++.+.|
T Consensus 7 ICGi~~~eda~~~~~~G-ad~iG--fI~~~~S~R~V~~~~a~~i~~~~~~~i~~VgV-f~~~~~~~i---~~~~~~~~~d 79 (210)
T PRK01222 7 ICGITTPEDAEAAAELG-ADAIG--FVFYPKSPRYVSPEQAAELAAALPPFVKVVGV-FVNASDEEI---DEIVETVPLD 79 (210)
T ss_pred ECCCCcHHHHHHHHHcC-CCEEE--EccCCCCCCcCCHHHHHHHHHhCCCCCCEEEE-EeCCCHHHH---HHHHHhcCCC
Confidence 36888888888888876 65543 332111000 0111122222 2222233332 223455544 4456688999
Q ss_pred EEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEE
Q 017176 93 EINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII 172 (376)
Q Consensus 93 ~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~v 172 (376)
.|.||...+ +++ ++.+++..++++.-.++.. +..++... ... ...+|++.+
T Consensus 80 ~vQLHg~e~-----------------~~~----~~~l~~~~~~~iik~i~v~--~~~~l~~~----~~~--~~~~d~~L~ 130 (210)
T PRK01222 80 LLQLHGDET-----------------PEF----CRQLKRRYGLPVIKALRVR--SAGDLEAA----AAY--YGDADGLLL 130 (210)
T ss_pred EEEECCCCC-----------------HHH----HHHHHhhcCCcEEEEEecC--CHHHHHHH----Hhh--hccCCEEEE
Confidence 999985322 222 3444544456665444442 21112111 111 236899888
Q ss_pred ccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHhhCCc
Q 017176 173 HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 173 h~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~ 244 (376)
.......+|. +. ..+|..+. +.. +.|++..||| +++.+.++++ .+..+|=+-+|+=..|-
T Consensus 131 Ds~~~~~GGt-G~------~~dw~~l~---~~~-~~p~~LAGGi-~peNv~~ai~~~~p~gvDvsSgvE~~~G 191 (210)
T PRK01222 131 DAYVGLPGGT-GK------TFDWSLLP---AGL-AKPWILAGGL-NPDNVAEAIRQVRPYGVDVSSGVESAPG 191 (210)
T ss_pred cCCCCCCCCC-CC------ccchHHhh---hcc-CCCEEEECCC-CHHHHHHHHHhcCCCEEEecCceECCCC
Confidence 8655422222 21 22355441 233 5699999999 8999999997 58888888888765454
|
|
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.042 Score=53.21 Aligned_cols=99 Identities=19% Similarity=0.198 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhh-cCCccEEEEccCccccCCCCCCCCCCCCcccHHH
Q 017176 119 PKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSS-LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 197 (376)
Q Consensus 119 ~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e-~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~ 197 (376)
++.-.+.++.++.....-+.| ..|..+ ++++.+ .++++ .+|+|.|+|..-. |++. ...+.
T Consensus 81 ~e~~~~fv~~~~~~~~~~~~v--avG~~~-~d~er~----~~L~~~~~g~D~iviD~Ah----Ghs~--------~~i~~ 141 (346)
T PRK05096 81 VEEWAAFVNNSSADVLKHVMV--STGTSD-ADFEKT----KQILALSPALNFICIDVAN----GYSE--------HFVQF 141 (346)
T ss_pred HHHHHHHHHhccccccceEEE--EecCCH-HHHHHH----HHHHhcCCCCCEEEEECCC----CcHH--------HHHHH
Confidence 444455555555433223333 445443 334332 33444 3799999985321 2211 11567
Q ss_pred HHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEch
Q 017176 198 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 198 v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGR 237 (376)
++.+++.+|+++ |..|.|-|++.+++++..|||+|=+|=
T Consensus 142 ik~ik~~~P~~~-vIaGNV~T~e~a~~Li~aGAD~vKVGI 180 (346)
T PRK05096 142 VAKAREAWPDKT-ICAGNVVTGEMVEELILSGADIVKVGI 180 (346)
T ss_pred HHHHHHhCCCCc-EEEecccCHHHHHHHHHcCCCEEEEcc
Confidence 888888888887 556999999999999999999975443
|
|
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.089 Score=48.98 Aligned_cols=201 Identities=17% Similarity=0.193 Sum_probs=115.9
Q ss_pred CCcEEEccCCCCChHHHHHHHHHhCCCcEEEeccee-ecccccccch---hhhhhc-----cCCCCCCEEEEe---cCCC
Q 017176 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLA-AETIIYQQGN---LDRFLA-----FSPEQHPIVLQI---GGSN 75 (376)
Q Consensus 8 ~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~-~~~~~~~~~~---~~~~~~-----~~~~~~p~~vQL---~g~~ 75 (376)
++..+++| ++-|..-.+++...| ...++|-... +..+...+.. ..+++. ....+.|+++-+ ||++
T Consensus 7 ~~~~l~~p--~~~D~~SAr~~e~~G-f~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~~iPv~vD~d~GyG~~ 83 (238)
T PF13714_consen 7 PGKPLVLP--NVWDALSARLAERAG-FDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAVSIPVIVDADTGYGND 83 (238)
T ss_dssp SSSSEEEE--EESSHHHHHHHHHTT--SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHSSSEEEEE-TTTSSSS
T ss_pred CCCcEEeC--CCcCHHHHHHHHHcC-CCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhhcCcEEEEcccccCch
Confidence 33455555 566777777777776 6666654332 2222222111 111111 112367888877 4677
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCC-CCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCC--CCccH
Q 017176 76 LDNLAKATELANAYNYDEINLNCG-CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVD--DHDSY 151 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~g-cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~--~~~~~ 151 (376)
+....+.++.+.++|+.+|.|.=. |. + . |..+. .++...+=|++++++. +..+.|=-|...- ....+
T Consensus 84 ~~~v~~tv~~~~~aG~agi~IEDq~~~------~-~-~~~l~-~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~ 154 (238)
T PF13714_consen 84 PENVARTVRELERAGAAGINIEDQRCG------H-G-GKQLV-SPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGL 154 (238)
T ss_dssp HHHHHHHHHHHHHCT-SEEEEESBSTT------T-S-TT-B---HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHH
T ss_pred hHHHHHHHHHHHHcCCcEEEeeccccC------C-C-CCcee-CHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCH
Confidence 999999999999999999999643 22 1 1 33444 5666666566665443 2224444454211 12346
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcC
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH 231 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad 231 (376)
++.++.. +.+.++|+|.|-+++-.. .+.+.++.+++ +.|+..+-+ ...-++.++.+.|+.
T Consensus 155 deaI~R~-~aY~eAGAD~ifi~~~~~-----------------~~~i~~~~~~~-~~Pl~v~~~-~~~~~~~eL~~lGv~ 214 (238)
T PF13714_consen 155 DEAIERA-KAYAEAGADMIFIPGLQS-----------------EEEIERIVKAV-DGPLNVNPG-PGTLSAEELAELGVK 214 (238)
T ss_dssp HHHHHHH-HHHHHTT-SEEEETTSSS-----------------HHHHHHHHHHH-SSEEEEETT-SSSS-HHHHHHTTES
T ss_pred HHHHHHH-HHHHHcCCCEEEeCCCCC-----------------HHHHHHHHHhc-CCCEEEEcC-CCCCCHHHHHHCCCc
Confidence 6666653 455679999999998531 34467777776 799877764 222566667778999
Q ss_pred eeEEchHHh
Q 017176 232 HVMVGRAAY 240 (376)
Q Consensus 232 ~VmiGRa~l 240 (376)
.|.+|-.++
T Consensus 215 ~v~~~~~~~ 223 (238)
T PF13714_consen 215 RVSYGNSLL 223 (238)
T ss_dssp EEEETSHHH
T ss_pred EEEEcHHHH
Confidence 999887654
|
... |
| >PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.25 Score=46.65 Aligned_cols=155 Identities=14% Similarity=0.148 Sum_probs=87.2
Q ss_pred CCChHHHHHHHHHhCCCcEEEecceee-cccccccc---hhhhhhc-----cCCCCC-CEEEEec-C---CCHHH-HHHH
Q 017176 18 DWTDNHYRTLARLISKHAWLYTEMLAA-ETIIYQQG---NLDRFLA-----FSPEQH-PIVLQIG-G---SNLDN-LAKA 82 (376)
Q Consensus 18 ~~td~~~r~~~~~~Gg~gl~~te~v~~-~~~~~~~~---~~~~~~~-----~~~~~~-p~~vQL~-g---~~~~~-~~~a 82 (376)
+.-|....+++.+.| ++.+.|+.... ..+.+.+. ..+.++. ...... ++++-+- | .++++ +..+
T Consensus 21 tayD~~sArl~e~aG-~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pfg~y~~~~~~av~~a 99 (264)
T PRK00311 21 TAYDYPFAKLFDEAG-VDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPFGSYQASPEQALRNA 99 (264)
T ss_pred eCCCHHHHHHHHHcC-CCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCCCCccCCHHHHHHHH
Confidence 677888988888886 88888762221 11222221 1111111 111233 3555552 3 35665 5556
Q ss_pred HHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec--------------CCCCCC
Q 017176 83 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR--------------IGVDDH 148 (376)
Q Consensus 83 a~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR--------------~g~~~~ 148 (376)
.+.++++|+++|.|--| +...+.++++++. ++||.--+- .|-++
T Consensus 100 ~r~~~~aGa~aVkiEdg--------------------~~~~~~I~al~~a-gIpV~gHiGL~pq~~~~~gg~~i~grt~- 157 (264)
T PRK00311 100 GRLMKEAGAHAVKLEGG--------------------EEVAETIKRLVER-GIPVMGHLGLTPQSVNVLGGYKVQGRDE- 157 (264)
T ss_pred HHHHHHhCCeEEEEcCc--------------------HHHHHHHHHHHHC-CCCEeeeecccceeecccCCeeeecCCH-
Confidence 66677799999988432 2345666666543 777741111 11111
Q ss_pred ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecC
Q 017176 149 DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 215 (376)
Q Consensus 149 ~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGg 215 (376)
+..+++++. ++.++++|++.|.+-+-. -+..+++.++. ++|+|+-|-
T Consensus 158 ~~a~~~i~r-a~a~~eAGA~~i~lE~v~------------------~~~~~~i~~~l-~iP~igiGa 204 (264)
T PRK00311 158 EAAEKLLED-AKALEEAGAFALVLECVP------------------AELAKEITEAL-SIPTIGIGA 204 (264)
T ss_pred HHHHHHHHH-HHHHHHCCCCEEEEcCCC------------------HHHHHHHHHhC-CCCEEEecc
Confidence 224555554 456788999999987531 24455666665 899997653
|
|
| >PLN02424 ketopantoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.14 Score=49.49 Aligned_cols=129 Identities=10% Similarity=0.071 Sum_probs=84.3
Q ss_pred hhhccCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCc
Q 017176 56 RFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135 (376)
Q Consensus 56 ~~~~~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~ 135 (376)
.+...+..+.|+++ +...|. ..|++++++|+|.|-+-- ....+. -+|-+.+--..+.+...+++|++.+..
T Consensus 26 ~l~~~k~~g~kivm-lTAyD~----~sA~i~d~aGvD~ILVGD--Slgmv~--lG~~~T~~Vtld~mi~H~~aV~Rga~~ 96 (332)
T PLN02424 26 TLRQKYRRGEPITM-VTAYDY----PSAVHVDSAGIDVCLVGD--SAAMVV--HGHDTTLPITLDEMLVHCRAVARGANR 96 (332)
T ss_pred HHHHHHhCCCcEEE-EecCCH----HHHHHHHHcCCCEEEECC--cHHHHh--cCCCCCCCcCHHHHHHHHHHHhccCCC
Confidence 34444555556543 555553 477889999999997732 211111 123444445678888999999999989
Q ss_pred cEEE-EecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEE
Q 017176 136 PVSV-KCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 211 (376)
Q Consensus 136 pv~v-KiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi 211 (376)
|++| -+..|... .+.++.++.+.+++.++|+++|.+-|+... ..+.++.+.+. +|||+
T Consensus 97 a~vVaDmPfgSY~-~s~e~av~nA~rl~~eaGa~aVKlEGg~~~---------------~~~~I~~l~~~--GIPV~ 155 (332)
T PLN02424 97 PLLVGDLPFGSYE-SSTDQAVESAVRMLKEGGMDAVKLEGGSPS---------------RVTAAKAIVEA--GIAVM 155 (332)
T ss_pred CEEEeCCCCCCCC-CCHHHHHHHHHHHHHHhCCcEEEECCCcHH---------------HHHHHHHHHHc--CCCEE
Confidence 9888 77776222 345666776677777899999999987310 13556666643 89998
|
|
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.28 Score=46.87 Aligned_cols=156 Identities=17% Similarity=0.176 Sum_probs=95.8
Q ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEE
Q 017176 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 140 (376)
Q Consensus 61 ~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vK 140 (376)
.+...|+++++.+.+.++..+.++.++++|+|++-+-. |... . ...+.+.+-.+.|.+.++.|+.+-
T Consensus 67 ~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~--P~~~-------~----~s~~~l~~y~~~ia~~~~~pi~iY 133 (289)
T PF00701_consen 67 AAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIP--PYYF-------K----PSQEELIDYFRAIADATDLPIIIY 133 (289)
T ss_dssp HTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEE--STSS-------S----CCHHHHHHHHHHHHHHSSSEEEEE
T ss_pred ccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEec--cccc-------c----chhhHHHHHHHHHHhhcCCCEEEE
Confidence 34567999999999999999999999999999998853 4321 1 245667888888888889999986
Q ss_pred ecCCCCCC-ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCC
Q 017176 141 CRIGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINT 218 (376)
Q Consensus 141 iR~g~~~~-~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s 218 (376)
-.+..... -+. ++ +.++++--.+-.|-.+.+. +..+.++.+.. +++ .+.+| +
T Consensus 134 n~P~~tg~~ls~-~~---l~~L~~~~nv~giK~s~~~------------------~~~~~~~~~~~~~~~-~v~~G---~ 187 (289)
T PF00701_consen 134 NNPARTGNDLSP-ET---LARLAKIPNVVGIKDSSGD------------------LERLIQLLRAVGPDF-SVFCG---D 187 (289)
T ss_dssp EBHHHHSSTSHH-HH---HHHHHTSTTEEEEEESSSB------------------HHHHHHHHHHSSTTS-EEEES---S
T ss_pred ECCCccccCCCH-HH---HHHHhcCCcEEEEEcCchh------------------HHHHHHHhhhcccCe-eeecc---c
Confidence 54421111 122 22 2344432234444433221 33334444443 244 35566 2
Q ss_pred HHHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhC
Q 017176 219 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256 (376)
Q Consensus 219 ~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 256 (376)
-+.+...+..|+||++.|-+.+ -|+++.+.++....|
T Consensus 188 d~~~~~~l~~G~~G~is~~~n~-~P~~~~~i~~~~~~G 224 (289)
T PF00701_consen 188 DELLLPALAAGADGFISGLANV-FPELIVEIYDAFQAG 224 (289)
T ss_dssp GGGHHHHHHTTSSEEEESGGGT-HHHHHHHHHHHHHTT
T ss_pred cccccccccccCCEEEEccccc-ChHHHHHHHHHHHcC
Confidence 2335567778999999998765 466655555544445
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >PLN02424 ketopantoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.15 Score=49.38 Aligned_cols=157 Identities=12% Similarity=0.030 Sum_probs=85.2
Q ss_pred CCChHHHHHHHHHhCCCcEEEecceeec-ccccccc---hhhhhhc-----cCCCCCCEEE-Ee----cCCCHHHHHHHH
Q 017176 18 DWTDNHYRTLARLISKHAWLYTEMLAAE-TIIYQQG---NLDRFLA-----FSPEQHPIVL-QI----GGSNLDNLAKAT 83 (376)
Q Consensus 18 ~~td~~~r~~~~~~Gg~gl~~te~v~~~-~~~~~~~---~~~~~~~-----~~~~~~p~~v-QL----~g~~~~~~~~aa 83 (376)
+.-|.++..++.+.| ++++-++-.... .+.+.+. ..+.++. ..-...++++ -+ ++.++++..+.|
T Consensus 41 TAyD~~sA~i~d~aG-vD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av~nA 119 (332)
T PLN02424 41 TAYDYPSAVHVDSAG-IDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQAVESA 119 (332)
T ss_pred ecCCHHHHHHHHHcC-CCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHHHHH
Confidence 455777777777775 777655522221 1111111 1111111 1223455554 32 234677766666
Q ss_pred HHH-HHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC---------CC----CCCc
Q 017176 84 ELA-NAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI---------GV----DDHD 149 (376)
Q Consensus 84 ~~~-~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~---------g~----~~~~ 149 (376)
.++ +++|+++|.|-.|+ ....++++++. ..++||.--+-+ |+ .+.+
T Consensus 120 ~rl~~eaGa~aVKlEGg~-------------------~~~~~~I~~l~-~~GIPV~gHiGLtPQs~~~lGGykvqGr~~~ 179 (332)
T PLN02424 120 VRMLKEGGMDAVKLEGGS-------------------PSRVTAAKAIV-EAGIAVMGHVGLTPQAISVLGGFRPQGRTAE 179 (332)
T ss_pred HHHHHHhCCcEEEECCCc-------------------HHHHHHHHHHH-HcCCCEEEeecccceeehhhcCccccCCCHH
Confidence 655 78999999885432 22345566665 457888733222 11 1112
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecC
Q 017176 150 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 215 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGg 215 (376)
...++++. ++.++++|++.|.+-+-. -+..+++.++ .+||+|+-|-
T Consensus 180 ~a~~li~d-A~ale~AGAf~ivLE~Vp------------------~~la~~It~~-l~IPtIGIGA 225 (332)
T PLN02424 180 SAVKVVET-ALALQEAGCFAVVLECVP------------------APVAAAITSA-LQIPTIGIGA 225 (332)
T ss_pred HHHHHHHH-HHHHHHcCCcEEEEcCCc------------------HHHHHHHHHh-CCCCEEeecC
Confidence 23445543 456789999999987632 2334555555 4899997653
|
|
| >COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.57 Score=44.44 Aligned_cols=198 Identities=14% Similarity=0.087 Sum_probs=109.3
Q ss_pred CCChHHHHHHHHHhCCCcEEEecceeec-ccccccch---hhhhhc-----cCCCCCCEEEEe---cCCCHHHHHHHHHH
Q 017176 18 DWTDNHYRTLARLISKHAWLYTEMLAAE-TIIYQQGN---LDRFLA-----FSPEQHPIVLQI---GGSNLDNLAKATEL 85 (376)
Q Consensus 18 ~~td~~~r~~~~~~Gg~gl~~te~v~~~-~~~~~~~~---~~~~~~-----~~~~~~p~~vQL---~g~~~~~~~~aa~~ 85 (376)
++=|..-..+..+.| .--+||-...+. .+...+-. ....+. ....+-|+.+-+ ||+ +...++.++.
T Consensus 24 g~~d~~sA~la~~aG-F~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~-~~nvartV~~ 101 (289)
T COG2513 24 GAWDAGSALLAERAG-FKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAVDLPVLVDIDTGFGE-ALNVARTVRE 101 (289)
T ss_pred CCcCHHHHHHHHHcC-CeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhcCCceEEeccCCCCc-HHHHHHHHHH
Confidence 444555566666665 555554433222 22222111 111111 133577888887 466 8889999999
Q ss_pred HHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHhhc
Q 017176 86 ANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSL 164 (376)
Q Consensus 86 ~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~ 164 (376)
+.++|..+|.|-=-. .+|-+ |+.-+.-+-+++...+-|+++++.. +.++.+=-|...--...+++.++. ++...+
T Consensus 102 ~~~aG~agi~iEDq~-~pk~c--gh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~R-a~AY~e 177 (289)
T COG2513 102 LEQAGAAGIHIEDQV-GPKRC--GHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIER-AQAYVE 177 (289)
T ss_pred HHHcCcceeeeeecc-cchhc--CCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHH-HHHHHH
Confidence 999999998874110 01111 1111122335555555566666554 456666555421111225555554 345678
Q ss_pred CCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEe---cCCCCHHHHHHHHHcCcCeeEEchHH
Q 017176 165 SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN---GGINTVDEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 165 ~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~n---GgI~s~~da~~~l~~Gad~VmiGRa~ 239 (376)
+|+|.|-.++.+. .+.+.++.+++ ++|+.+| .+-.-.-++.+.-+.|+..|..|-.+
T Consensus 178 AGAD~if~~al~~-----------------~e~i~~f~~av-~~pl~~N~t~~g~tp~~~~~~L~~~Gv~~V~~~~~~ 237 (289)
T COG2513 178 AGADAIFPEALTD-----------------LEEIRAFAEAV-PVPLPANITEFGKTPLLTVAELAELGVKRVSYGLTA 237 (289)
T ss_pred cCCcEEccccCCC-----------------HHHHHHHHHhc-CCCeeeEeeccCCCCCcCHHHHHhcCceEEEECcHH
Confidence 9999999887642 45667777765 5777666 22211223334445799999886443
|
|
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.062 Score=52.06 Aligned_cols=98 Identities=17% Similarity=0.214 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhc-CCccEEEEccCccccCCCCCCCCCCCCcccHHH
Q 017176 119 PKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSL-SPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 197 (376)
Q Consensus 119 ~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~-~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~ 197 (376)
++.-.+.++.+.+....-+.| ..|..+ ++++. +..+++. .|+|.|+|..-. |++. ...+.
T Consensus 80 ~e~~~~~v~~~~~~~~~~~~v--svG~~~-~d~er----~~~L~~a~~~~d~iviD~Ah----Ghs~--------~~i~~ 140 (343)
T TIGR01305 80 VDEWKAFATNSSPDCLQNVAV--SSGSSD-NDLEK----MTSILEAVPQLKFICLDVAN----GYSE--------HFVEF 140 (343)
T ss_pred HHHHHHHHHhhcccccceEEE--EeccCH-HHHHH----HHHHHhcCCCCCEEEEECCC----CcHH--------HHHHH
Confidence 344444454444333333333 444443 23333 2334432 369999985321 2111 11566
Q ss_pred HHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017176 198 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 198 v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
++.+++.+|+ +.|..|.|.|+++++++++.|||+|-+|
T Consensus 141 ik~ir~~~p~-~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 141 VKLVREAFPE-HTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred HHHHHhhCCC-CeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 7788887766 5667799999999999999999999877
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.57 Score=44.69 Aligned_cols=150 Identities=12% Similarity=0.193 Sum_probs=92.6
Q ss_pred CCCEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017176 64 QHPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 64 ~~p~~vQL~g~-~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
..|+++.|=+. +.+. ++.+.++||+.|-+-.+ --.++.+.+...++++.... .+++|-.-+.
T Consensus 74 ~vPV~lHLDH~~~~e~----i~~Ai~~GftSVM~DgS------------~l~~eeNi~~T~~vve~Ah~-~gv~VEaElG 136 (283)
T PRK07998 74 DVPVSLHLDHGKTFED----VKQAVRAGFTSVMIDGA------------ALPFEENIAFTKEAVDFAKS-YGVPVEAELG 136 (283)
T ss_pred CCCEEEECcCCCCHHH----HHHHHHcCCCEEEEeCC------------CCCHHHHHHHHHHHHHHHHH-cCCEEEEEec
Confidence 44666666443 3222 23344667777766321 11223466677777776654 4666533321
Q ss_pred -C-CCCC--------CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE
Q 017176 143 -I-GVDD--------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL 212 (376)
Q Consensus 143 -~-g~~~--------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~ 212 (376)
+ |-++ ..+.++..+| .++.|+|.+.|.-++..-.+. . +.++++.+.++.+.. ++|++.
T Consensus 137 ~vgg~ed~~~~~~~~~T~pe~a~~F----v~~TgvD~LAvaiGt~HG~Y~------~-p~l~~~~l~~I~~~~-~vPLVl 204 (283)
T PRK07998 137 AILGKEDDHVSEADCKTEPEKVKDF----VERTGCDMLAVSIGNVHGLED------I-PRIDIPLLKRIAEVS-PVPLVI 204 (283)
T ss_pred cCCCccccccccccccCCHHHHHHH----HHHhCcCeeehhccccccCCC------C-CCcCHHHHHHHHhhC-CCCEEE
Confidence 1 2221 1345555554 357899999988776421111 1 446688999987765 899999
Q ss_pred ecCCCCH-HHHHHHHHcCcCeeEEchHHhhC
Q 017176 213 NGGINTV-DEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 213 nGgI~s~-~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
-||=-.+ +++.++++.|+.-|=++|.+...
T Consensus 205 HGgSG~~~e~~~~ai~~Gi~KiNi~Tel~~a 235 (283)
T PRK07998 205 HGGSGIPPEILRSFVNYKVAKVNIASDLRKA 235 (283)
T ss_pred eCCCCCCHHHHHHHHHcCCcEEEECHHHHHH
Confidence 9887766 67788888999999999987544
|
|
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.27 Score=46.23 Aligned_cols=156 Identities=13% Similarity=0.133 Sum_probs=87.4
Q ss_pred CCChHHHHHHHHHhCCCcEEEecceee-cccccccc---hhhhhhc-----cCCCCCC-EEEEec-C---CCHHHHHHHH
Q 017176 18 DWTDNHYRTLARLISKHAWLYTEMLAA-ETIIYQQG---NLDRFLA-----FSPEQHP-IVLQIG-G---SNLDNLAKAT 83 (376)
Q Consensus 18 ~~td~~~r~~~~~~Gg~gl~~te~v~~-~~~~~~~~---~~~~~~~-----~~~~~~p-~~vQL~-g---~~~~~~~~aa 83 (376)
+.-|....+++.+.| +..++|..... ..+.+.+. ..+.++. ....+.| +++-+- | +++++..+.+
T Consensus 18 ~ayD~~sA~l~e~aG-~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~a 96 (254)
T cd06557 18 TAYDYPTAKLADEAG-VDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRNA 96 (254)
T ss_pred eCCCHHHHHHHHHcC-CCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHHH
Confidence 667888888888876 88888763222 11222211 1111111 1223456 555442 3 4577766655
Q ss_pred H-HHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC---------CC----CCCc
Q 017176 84 E-LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI---------GV----DDHD 149 (376)
Q Consensus 84 ~-~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~---------g~----~~~~ 149 (376)
. .++++|+++|.|--| ....+.|+++++ .++||.--+-+ |+ ....
T Consensus 97 ~r~~~~aGa~aVkiEd~--------------------~~~~~~I~al~~-agipV~gHiGL~pq~~~~~gg~~~~grt~~ 155 (254)
T cd06557 97 ARLMKEAGADAVKLEGG--------------------AEVAETIRALVD-AGIPVMGHIGLTPQSVNQLGGYKVQGKTEE 155 (254)
T ss_pred HHHHHHhCCeEEEEcCc--------------------HHHHHHHHHHHH-cCCCeeccccccceeeeccCCceeccCCHH
Confidence 4 555699999988432 245556666654 35666522211 11 1112
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecC
Q 017176 150 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 215 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGg 215 (376)
..+++++. ++.++++|++.|.+-+-. -+..+++.++. ++|+|+-|.
T Consensus 156 ~a~~~i~r-a~a~~~AGA~~i~lE~v~------------------~~~~~~i~~~v-~iP~igiGa 201 (254)
T cd06557 156 EAERLLED-ALALEEAGAFALVLECVP------------------AELAKEITEAL-SIPTIGIGA 201 (254)
T ss_pred HHHHHHHH-HHHHHHCCCCEEEEcCCC------------------HHHHHHHHHhC-CCCEEEecc
Confidence 24555554 456788999999987531 24456666665 899998764
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. |
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.13 Score=49.03 Aligned_cols=87 Identities=16% Similarity=0.163 Sum_probs=58.3
Q ss_pred HHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHH
Q 017176 81 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 160 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~ 160 (376)
-.|+.++++||++|=+...+=.......|. | ++ ..+.+.+.++.|...+++||++-+-.|+-+..++.+++ +
T Consensus 24 ~SAri~e~aGf~Ai~~sg~~~a~~lG~pD~-g--~l-t~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~~tv----~ 95 (285)
T TIGR02317 24 MAALLAERAGFEAIYLSGAAVAASLGLPDL-G--IT-TLDEVAEDARRITRVTDLPLLVDADTGFGEAFNVARTV----R 95 (285)
T ss_pred HHHHHHHHcCCCEEEEcHHHHHHhCCCCCC-C--CC-CHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHH----H
Confidence 367788899999998864332111111232 2 22 56677778888888899999999998887644443333 2
Q ss_pred HhhcCCccEEEEccC
Q 017176 161 VSSLSPTRHFIIHSR 175 (376)
Q Consensus 161 ~~e~~Gvd~I~vh~r 175 (376)
.++++|+..|++--.
T Consensus 96 ~~~~aG~agi~IEDq 110 (285)
T TIGR02317 96 EMEDAGAAAVHIEDQ 110 (285)
T ss_pred HHHHcCCeEEEEecC
Confidence 345799999999643
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.15 Score=48.79 Aligned_cols=86 Identities=14% Similarity=0.088 Sum_probs=57.5
Q ss_pred HHHHHHHHCCCCEEEecCCCCC-ccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHH
Q 017176 81 KATELANAYNYDEINLNCGCPS-PKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 159 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~-~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~ 159 (376)
-.|+.++++||++|=+...+=. ......|. | +-..+.+.+.++.|.+.+++||++-+-.|+-+..++.++ +.
T Consensus 28 ~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~-g---~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~---V~ 100 (292)
T PRK11320 28 YHALLAERAGFKAIYLSGGGVAAASLGLPDL-G---ITTLDDVLIDVRRITDACDLPLLVDIDTGFGGAFNIART---VK 100 (292)
T ss_pred HHHHHHHHcCCCEEEeCHHHHHhHhcCCCCC-C---CCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHH---HH
Confidence 3678889999999977543111 11111232 2 234567788888888889999999999888754444333 33
Q ss_pred HHhhcCCccEEEEcc
Q 017176 160 KVSSLSPTRHFIIHS 174 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh~ 174 (376)
.++++|+..|++--
T Consensus 101 -~~~~aGaagi~IED 114 (292)
T PRK11320 101 -SMIKAGAAAVHIED 114 (292)
T ss_pred -HHHHcCCeEEEEec
Confidence 34679999999954
|
|
| >PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.14 Score=47.28 Aligned_cols=139 Identities=14% Similarity=0.156 Sum_probs=75.0
Q ss_pred CCCEEEEe----cCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEE
Q 017176 64 QHPIVLQI----GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVS 138 (376)
Q Consensus 64 ~~p~~vQL----~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~ 138 (376)
+.++++-+ .++.+.. +++.+.++|+|.+-+|+..+ .+-+...+++.++.. +.-+.
T Consensus 53 ~~~i~~D~Kl~Di~~t~~~---~i~~~~~~gad~itvH~~ag-----------------~~~i~~~~~~~~~~~~~~~~~ 112 (230)
T PRK00230 53 GFKVFLDLKLHDIPNTVAK---AVRALAKLGVDMVNVHASGG-----------------PRMMKAAREALEPKSRPLLIA 112 (230)
T ss_pred CCCEEEEeehhhccccHHH---HHHHHHHcCCCEEEEcccCC-----------------HHHHHHHHHHhhccCCCeEEE
Confidence 34555544 3555554 44556789999999985322 223344444433211 11222
Q ss_pred EEecCCCCC--C------ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeE
Q 017176 139 VKCRIGVDD--H------DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF 210 (376)
Q Consensus 139 vKiR~g~~~--~------~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipV 210 (376)
|-+-..++. . .++++.+..+++...+.|+|.+.++... +..+++..++-.+
T Consensus 113 V~~lts~~~~~l~~~~~~~~~~~~v~~~a~~a~~~g~dgvv~~~~~---------------------~~~ir~~~~~~~~ 171 (230)
T PRK00230 113 VTVLTSMDEEDLAELGINLSLEEQVLRLAKLAQEAGLDGVVCSAQE---------------------AAAIREATGPDFL 171 (230)
T ss_pred EEECCCCCHHHHHhCcCCCCHHHHHHHHHHHHHHcCCeEEEeChHH---------------------HHHHHhhcCCceE
Confidence 221112211 0 1123444344556667898887765321 1122222223345
Q ss_pred EEecCCCCHH-----------HHHHHHHcCcCeeEEchHHhhCCc
Q 017176 211 TLNGGINTVD-----------EVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 211 i~nGgI~s~~-----------da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
+.++||. ++ ...++++.|+|+|.+||+....+.
T Consensus 172 ~v~pGI~-~~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~I~~a~d 215 (230)
T PRK00230 172 LVTPGIR-PAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPITQAAD 215 (230)
T ss_pred EEcCCcC-CCCCCcchHHHHhCHHHHHHcCCCEEEECCcccCCCC
Confidence 6667775 33 467777889999999999987766
|
|
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.024 Score=58.46 Aligned_cols=62 Identities=18% Similarity=0.321 Sum_probs=48.1
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017176 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
+.++|+|.|.|... .|.+. ..++.++++++.++++||++ |+|.|.+++..+++.|||+|.+|
T Consensus 249 l~~ag~d~i~id~a----~G~s~--------~~~~~i~~ik~~~~~~~v~a-G~V~t~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 249 LIEAGVDVLVVDSS----QGNSI--------YQIDMIKKLKSNYPHVDIIA-GNVVTADQAKNLIDAGADGLRIG 310 (495)
T ss_pred HHHCCCCEEEEecC----CCCch--------HHHHHHHHHHhhCCCceEEE-CCcCCHHHHHHHHHcCCCEEEEC
Confidence 44699999998642 12111 12678888888888888777 99999999999999999999864
|
|
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.03 Score=51.15 Aligned_cols=71 Identities=17% Similarity=0.088 Sum_probs=53.3
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.+++.|+++|++..-.....|. .+.+..+++. +++||+.-|.|.+..+++.+++.|||+|.++-.
T Consensus 37 A~~~~~~GA~~l~v~~~~~~~~g~------------~~~~~~i~~~-v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~ 103 (217)
T cd00331 37 AKAYEKAGAAAISVLTEPKYFQGS------------LEDLRAVREA-VSLPVLRKDFIIDPYQIYEARAAGADAVLLIVA 103 (217)
T ss_pred HHHHHHcCCCEEEEEeCccccCCC------------HHHHHHHHHh-cCCCEEECCeecCHHHHHHHHHcCCCEEEEeec
Confidence 445678999999887544322221 4555566554 489999989999999999999999999999887
Q ss_pred HhhC
Q 017176 239 AYQN 242 (376)
Q Consensus 239 ~l~~ 242 (376)
.+..
T Consensus 104 ~~~~ 107 (217)
T cd00331 104 ALDD 107 (217)
T ss_pred cCCH
Confidence 7643
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.13 Score=48.37 Aligned_cols=150 Identities=13% Similarity=0.044 Sum_probs=87.3
Q ss_pred hhccCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCcc
Q 017176 57 FLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 136 (376)
Q Consensus 57 ~~~~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~p 136 (376)
+.+.+..+.|+++ +...| .-.|++++++|+|.|=+- .....+. -+|-..+.-..+.+...+++|++....|
T Consensus 7 ~~~~~~~g~~i~m-~tayD----~~sA~i~~~aG~d~ilvG--dSlgm~~--lG~~~t~~vtldem~~h~~aV~rg~~~~ 77 (263)
T TIGR00222 7 LLQKKKQEEKIVA-ITAYD----YSFAKLFADAGVDVILVG--DSLGMVV--LGHDSTLPVTVADMIYHTAAVKRGAPNC 77 (263)
T ss_pred HHHHHhCCCcEEE-EeccC----HHHHHHHHHcCCCEEEEC--ccHhHHh--cCCCCCCCcCHHHHHHHHHHHHhhCCCc
Confidence 3344445555543 34444 247788999999999753 2222211 1233334456788888889998875444
Q ss_pred EEE-EecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEE----
Q 017176 137 VSV-KCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT---- 211 (376)
Q Consensus 137 v~v-KiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi---- 211 (376)
+.| .+..+.. .+.++.++.+.++++++|+++|.+-++... .+.++.+.+. .|||+
T Consensus 78 ~vv~DmPf~sy--~~~e~a~~na~rl~~eaGa~aVkiEgg~~~----------------~~~i~~l~~~--gIpV~gHiG 137 (263)
T TIGR00222 78 LIVTDLPFMSY--ATPEQALKNAARVMQETGANAVKLEGGEWL----------------VETVQMLTER--GVPVVGHLG 137 (263)
T ss_pred eEEeCCCcCCC--CCHHHHHHHHHHHHHHhCCeEEEEcCcHhH----------------HHHHHHHHHC--CCCEEEecC
Confidence 332 3333322 125566666677888899999999885311 2344444443 78888
Q ss_pred -----Ee--cCC----CCHHHHHH-------HHHcCcCeeEE
Q 017176 212 -----LN--GGI----NTVDEVNA-------ALRKGAHHVMV 235 (376)
Q Consensus 212 -----~n--GgI----~s~~da~~-------~l~~Gad~Vmi 235 (376)
++ ||. .+.+.+.+ +.+.||+++.+
T Consensus 138 ltPq~a~~~ggy~~qgrt~~~a~~~i~~A~a~e~AGA~~ivl 179 (263)
T TIGR00222 138 LTPQSVNILGGYKVQGKDEEAAKKLLEDALALEEAGAQLLVL 179 (263)
T ss_pred CCceeEeecCCeeecCCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 33 543 24444333 33479998876
|
Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase. |
| >cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.11 Score=49.20 Aligned_cols=39 Identities=23% Similarity=0.440 Sum_probs=33.4
Q ss_pred CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 206 PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 206 ~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
+++||.+.||| +++.+.+..++|+|++.+|.-...-|++
T Consensus 226 ~~i~i~asGGI-t~~ni~~~a~~Gad~Isvgal~~s~~~~ 264 (269)
T cd01568 226 PRVLLEASGGI-TLENIRAYAETGVDVISTGALTHSAPAL 264 (269)
T ss_pred CCeEEEEECCC-CHHHHHHHHHcCCCEEEEcHHHcCCCcc
Confidence 57999999999 7999999999999999998666666664
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.42 Score=45.88 Aligned_cols=143 Identities=13% Similarity=0.177 Sum_probs=74.6
Q ss_pred HHHHHHHHCCCCEEEecCC-------CCCccccCCCCccccccCC-------HH-HHHHHHHHHhcccCccEEEEecCCC
Q 017176 81 KATELANAYNYDEINLNCG-------CPSPKVAGHGCFGVSLMLD-------PK-FVGEAMSVIAANTNVPVSVKCRIGV 145 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~g-------cP~~~v~r~g~yG~~l~~~-------~~-~~~eiv~~v~~~~~~pv~vKiR~g~ 145 (376)
+.++.+.+.||.+|.+-.- -|.+...+.. .++.|. .+ .+.++.+. ++..+.|+.+-+.-
T Consensus 27 ~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~---~~~~n~~g~~~~g~~~~~~~~~~~-~~~~~~p~i~si~g-- 100 (301)
T PRK07259 27 EYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETP---GGMLNAIGLQNPGVDAFIEEELPW-LEEFDTPIIANVAG-- 100 (301)
T ss_pred HHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecC---CceeecCCCCCcCHHHHHHHHHHH-HhccCCcEEEEecc--
Confidence 4555566789999988543 3333333222 233332 23 33333333 33447888887753
Q ss_pred CCCccHHHHHHHHHHHhhcCC-ccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE--ecCCCCHHHH
Q 017176 146 DDHDSYNQLCDFIYKVSSLSP-TRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL--NGGINTVDEV 222 (376)
Q Consensus 146 ~~~~~~~~~~~~i~~~~e~~G-vd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~--nGgI~s~~da 222 (376)
. +.++..+. ++.++++| +|+|.++.......+ ++......+....+.+.++++.. ++||+. +.++.+..++
T Consensus 101 ~---~~~~~~~~-a~~~~~aG~~D~iElN~~cP~~~~-gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~ 174 (301)
T PRK07259 101 S---TEEEYAEV-AEKLSKAPNVDAIELNISCPNVKH-GGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTPNVTDIVEI 174 (301)
T ss_pred C---CHHHHHHH-HHHHhccCCcCEEEEECCCCCCCC-CccccccCHHHHHHHHHHHHHhc-CCCEEEEcCCCchhHHHH
Confidence 2 23444443 44557888 999998543221110 01110111122245566665544 889876 3345455555
Q ss_pred HHHHH-cCcCeeEE
Q 017176 223 NAALR-KGAHHVMV 235 (376)
Q Consensus 223 ~~~l~-~Gad~Vmi 235 (376)
.+.++ .|+|++.+
T Consensus 175 a~~l~~~G~d~i~~ 188 (301)
T PRK07259 175 AKAAEEAGADGLSL 188 (301)
T ss_pred HHHHHHcCCCEEEE
Confidence 55555 89999865
|
|
| >TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.26 Score=47.23 Aligned_cols=86 Identities=14% Similarity=0.086 Sum_probs=57.7
Q ss_pred HHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHH
Q 017176 81 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 160 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~ 160 (376)
-.|+.++++||++|=+...+=.......|. | + -..+.+.+.++.|.+.+++||++-+-.|+-+..++.+++ .
T Consensus 26 lSAri~e~aGf~ai~~ss~~va~slG~pD~-g--~-l~~~e~~~~~~~I~~~~~lPv~aD~d~GyG~~~~v~~tV---~- 97 (290)
T TIGR02321 26 LVAKLAEQAGFGGIWGSGFELSASYAVPDA-N--I-LSMSTHLEMMRAIASTVSIPLIADIDTGFGNAVNVHYVV---P- 97 (290)
T ss_pred HHHHHHHHcCCCEEEECHHHHHHHCCCCCc-c--c-CCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHH---H-
Confidence 367888999999997754221100011221 2 2 256677888888898999999999999987654444433 2
Q ss_pred HhhcCCccEEEEcc
Q 017176 161 VSSLSPTRHFIIHS 174 (376)
Q Consensus 161 ~~e~~Gvd~I~vh~ 174 (376)
.++++|+..|++--
T Consensus 98 ~~~~aGvagi~IED 111 (290)
T TIGR02321 98 QYEAAGASAIVMED 111 (290)
T ss_pred HHHHcCCeEEEEeC
Confidence 34579999999954
|
This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2. |
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.19 Score=46.78 Aligned_cols=131 Identities=8% Similarity=0.012 Sum_probs=81.0
Q ss_pred HHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC-ccEEEEecCCCCCCccHHHHHHHHH
Q 017176 81 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDFIY 159 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~-~pv~vKiR~g~~~~~~~~~~~~~i~ 159 (376)
-.|+.++++|||.|=+........ .| |=....-..+.+...+++|++.+. .||++-+-.|+... .++..+.+.
T Consensus 23 ~sA~i~e~aG~dai~v~~s~~a~~---~G-~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~--~~~~~~~~~ 96 (240)
T cd06556 23 SMAKQFADAGLNVMLVGDSQGMTV---AG-YDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGA--PTAAFELAK 96 (240)
T ss_pred HHHHHHHHcCCCEEEEChHHHHHh---cC-CCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcC--HHHHHHHHH
Confidence 367888899999998854322110 01 111112356788888888888875 79999998887652 234555445
Q ss_pred HHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCC---------------CHHHHHH
Q 017176 160 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN---------------TVDEVNA 224 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~---------------s~~da~~ 224 (376)
++. ++|++.|++-+... ..+.+..+++. .+||++==|.. +.+++++
T Consensus 97 ~l~-~aGa~gv~iED~~~----------------~~~~i~ai~~a--~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ 157 (240)
T cd06556 97 TFM-RAGAAGVKIEGGEW----------------HIETLQMLTAA--AVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQ 157 (240)
T ss_pred HHH-HcCCcEEEEcCcHH----------------HHHHHHHHHHc--CCeEEEEeCCchhhhhccCCceeeccCHHHHHH
Confidence 554 59999999987421 02344555543 57888765552 1233333
Q ss_pred H-------HHcCcCeeEEc
Q 017176 225 A-------LRKGAHHVMVG 236 (376)
Q Consensus 225 ~-------l~~Gad~VmiG 236 (376)
+ .+.|||+|.+=
T Consensus 158 ai~Ra~ay~~AGAd~i~~e 176 (240)
T cd06556 158 LIADALAYAPAGADLIVME 176 (240)
T ss_pred HHHHHHHHHHcCCCEEEEc
Confidence 2 34799999984
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.13 Score=49.23 Aligned_cols=84 Identities=12% Similarity=0.069 Sum_probs=53.2
Q ss_pred HHHHHHHHC---------CCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccH
Q 017176 81 KATELANAY---------NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSY 151 (376)
Q Consensus 81 ~aa~~~~~~---------G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~ 151 (376)
-.|+.++++ ||++|=+...+=.......|. | ++ ..+.+.+.++.|...+++||++-+-.| .+..++
T Consensus 20 ~SA~~~e~~~~~~~~~~~Gf~ai~~ss~~~a~s~G~pD~-~--~~-~~~e~~~~~~~I~~a~~~Pv~~D~d~G-g~~~~v 94 (285)
T TIGR02320 20 LSALIAEEARVEVGGESLGFDGIWSSSLTDSTSRGVPDI-E--EA-SWTQRLDVVEFMFDVTTKPIILDGDTG-GNFEHF 94 (285)
T ss_pred HHHHHHHHhhhcccCcCCCcCEEEechHHHHHHCCCCCc-C--cC-CHHHHHHHHHHHHhhcCCCEEEecCCC-CCHHHH
Confidence 366778888 999998754322111111221 2 22 455666778888888899999988887 443333
Q ss_pred HHHHHHHHHHhhcCCccEEEEc
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIH 173 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh 173 (376)
.++ +.+ ++++|+..|++-
T Consensus 95 ~r~---V~~-l~~aGvaGi~iE 112 (285)
T TIGR02320 95 RRL---VRK-LERRGVSAVCIE 112 (285)
T ss_pred HHH---HHH-HHHcCCeEEEEe
Confidence 333 333 457999999994
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.41 Score=45.13 Aligned_cols=156 Identities=10% Similarity=0.114 Sum_probs=83.6
Q ss_pred CCCChHHHHHHHHHhCCCcEEEecceeecc-cccccc---hhhhhhc----c-CCCCCCEEE-Ee--cCC-CHHHHHH-H
Q 017176 17 MDWTDNHYRTLARLISKHAWLYTEMLAAET-IIYQQG---NLDRFLA----F-SPEQHPIVL-QI--GGS-NLDNLAK-A 82 (376)
Q Consensus 17 ~~~td~~~r~~~~~~Gg~gl~~te~v~~~~-~~~~~~---~~~~~~~----~-~~~~~p~~v-QL--~g~-~~~~~~~-a 82 (376)
.+.-|.....++.+.| ++.+.|.-..... +.+.+. ..+.++. + .....++++ .+ .+. ++++..+ +
T Consensus 20 ~tayD~~sA~i~~~aG-~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~DmPf~sy~~~e~a~~na 98 (263)
T TIGR00222 20 ITAYDYSFAKLFADAG-VDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTDLPFMSYATPEQALKNA 98 (263)
T ss_pred EeccCHHHHHHHHHcC-CCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeCCCcCCCCCHHHHHHHH
Confidence 3566888888888876 8888776222211 111111 1111111 1 112334443 21 121 3655444 4
Q ss_pred HHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEE---------EEecCCCC----CCc
Q 017176 83 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVS---------VKCRIGVD----DHD 149 (376)
Q Consensus 83 a~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~---------vKiR~g~~----~~~ 149 (376)
.+.++++|+++|.|-.| ..+.+.++.+.+ .++||. +..-.|+. +.+
T Consensus 99 ~rl~~eaGa~aVkiEgg--------------------~~~~~~i~~l~~-~gIpV~gHiGltPq~a~~~ggy~~qgrt~~ 157 (263)
T TIGR00222 99 ARVMQETGANAVKLEGG--------------------EWLVETVQMLTE-RGVPVVGHLGLTPQSVNILGGYKVQGKDEE 157 (263)
T ss_pred HHHHHHhCCeEEEEcCc--------------------HhHHHHHHHHHH-CCCCEEEecCCCceeEeecCCeeecCCCHH
Confidence 55567799999988532 223455555543 366766 44222221 112
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEec
Q 017176 150 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 214 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nG 214 (376)
..+++++. ++.++++|++.|.+-+-. -+..+++.++. ++|+|+-|
T Consensus 158 ~a~~~i~~-A~a~e~AGA~~ivlE~vp------------------~~~a~~It~~l-~iP~iGIG 202 (263)
T TIGR00222 158 AAKKLLED-ALALEEAGAQLLVLECVP------------------VELAAKITEAL-AIPVIGIG 202 (263)
T ss_pred HHHHHHHH-HHHHHHcCCCEEEEcCCc------------------HHHHHHHHHhC-CCCEEeec
Confidence 34455554 456789999999987532 24445666664 89998765
|
Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase. |
| >PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.15 Score=48.21 Aligned_cols=124 Identities=14% Similarity=0.084 Sum_probs=73.0
Q ss_pred cCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCcc-EE
Q 017176 60 FSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP-VS 138 (376)
Q Consensus 60 ~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~p-v~ 138 (376)
.+..+.|+++ +...|. -.|++++++|||.|=. |.....+. .| |-....-..+.+...+++|++.++.| |.
T Consensus 10 ~~~~g~~i~~-~tayD~----~sArl~e~aG~d~i~v--Gds~~~~~-lG-~~Dt~~vtl~em~~h~~~V~r~~~~p~vv 80 (264)
T PRK00311 10 MKQEGEKIVM-LTAYDY----PFAKLFDEAGVDVILV--GDSLGMVV-LG-YDSTLPVTLDDMIYHTKAVARGAPRALVV 80 (264)
T ss_pred HHhCCCCEEE-EeCCCH----HHHHHHHHcCCCEEEE--CHHHHHHH-cC-CCCCCCcCHHHHHHHHHHHHhcCCCCcEE
Confidence 3344555532 334443 4678899999999954 32221111 11 12222345677888888888888776 66
Q ss_pred EEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEE
Q 017176 139 VKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 211 (376)
Q Consensus 139 vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi 211 (376)
+-+..|-.. .+.++.++...++++++|+++|.+-++.. ..+.++.+++. +|||+
T Consensus 81 aD~pfg~y~-~~~~~av~~a~r~~~~aGa~aVkiEdg~~----------------~~~~I~al~~a--gIpV~ 134 (264)
T PRK00311 81 ADMPFGSYQ-ASPEQALRNAGRLMKEAGAHAVKLEGGEE----------------VAETIKRLVER--GIPVM 134 (264)
T ss_pred EeCCCCCcc-CCHHHHHHHHHHHHHHhCCeEEEEcCcHH----------------HHHHHHHHHHC--CCCEe
Confidence 666433111 34455555566777789999999987521 03445555543 78887
|
|
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.035 Score=51.09 Aligned_cols=75 Identities=13% Similarity=0.155 Sum_probs=56.4
Q ss_pred HHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH--cCcCeeEEch
Q 017176 160 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR--KGAHHVMVGR 237 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~--~Gad~VmiGR 237 (376)
+.+.+.|+|.|++--=.... |. +.+.+.+.++.++ +||..-|||+|.+|+++++. .+||-|.+|+
T Consensus 43 ~~~~~~g~~~l~ivDLd~~~-~~---------~~n~~~i~~i~~~---~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT 109 (221)
T TIGR00734 43 KVIEEIGARFIYIADLDRIV-GL---------GDNFSLLSKLSKR---VELIADCGVRSPEDLETLPFTLEFASRVVVAT 109 (221)
T ss_pred HHHHHcCCCEEEEEEccccc-CC---------cchHHHHHHHHhh---CcEEEcCccCCHHHHHHHHhhhccceEEeecC
Confidence 34457899999875322211 21 1237788888775 48999999999999999965 3699999999
Q ss_pred HHhhCCchhh
Q 017176 238 AAYQNPWYTL 247 (376)
Q Consensus 238 a~l~~P~lf~ 247 (376)
.++.||.++.
T Consensus 110 ~a~~~p~~l~ 119 (221)
T TIGR00734 110 ETLDITELLR 119 (221)
T ss_pred hhhCCHHHHH
Confidence 9999999753
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.47 Score=44.74 Aligned_cols=109 Identities=17% Similarity=0.158 Sum_probs=66.1
Q ss_pred cccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEE-EccCccccCCCCCCCCCCC
Q 017176 112 GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFI-IHSRKALLNGISPAENRTI 190 (376)
Q Consensus 112 G~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~-vh~r~~~~~g~~~~~~~~~ 190 (376)
|+..+.+.+++..+ . .++.||.+|.-.. .+++++...+..+ .+.|..-|. +|.++..+.+. ..
T Consensus 115 ~s~~~~n~~LL~~~----a-~~gkPVilk~G~~----~t~~e~~~Ave~i-~~~Gn~~i~l~~rG~s~y~~~------~~ 178 (260)
T TIGR01361 115 GARNMQNFELLKEV----G-KQGKPVLLKRGMG----NTIEEWLYAAEYI-LSSGNGNVILCERGIRTFEKA------TR 178 (260)
T ss_pred CcccccCHHHHHHH----h-cCCCcEEEeCCCC----CCHHHHHHHHHHH-HHcCCCcEEEEECCCCCCCCC------Cc
Confidence 66677777755443 2 3589999996653 1344555444444 457875444 47655433221 11
Q ss_pred CcccHHHHHHHHhhCCCCeEEE-ecCCCC-----HHHHHHHHHcCcCeeEEch
Q 017176 191 PPLKYEYYYALLRDFPDLTFTL-NGGINT-----VDEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 191 ~~~~~~~v~~~~~~~~~ipVi~-nGgI~s-----~~da~~~l~~Gad~VmiGR 237 (376)
..+++..+..+++.+ ++||+. .+-... ...+..++..||||++|=+
T Consensus 179 ~~~dl~~i~~lk~~~-~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~ 230 (260)
T TIGR01361 179 NTLDLSAVPVLKKET-HLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEV 230 (260)
T ss_pred CCcCHHHHHHHHHhh-CCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEe
Confidence 234577777777665 899999 333333 4555667778999998754
|
The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis. |
| >PRK13813 orotidine 5'-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.3 Score=44.41 Aligned_cols=124 Identities=16% Similarity=0.134 Sum_probs=72.1
Q ss_pred HHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCC-CCCCccHHHHHHHHHHHh
Q 017176 84 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG-VDDHDSYNQLCDFIYKVS 162 (376)
Q Consensus 84 ~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g-~~~~~~~~~~~~~i~~~~ 162 (376)
+.+.++|+|.|-+|.-+ | .+.+.++++.+++. +.++.+-+-+. +.....+.+.++.+..+.
T Consensus 74 ~~~~~~gad~vtvh~e~-----------g------~~~l~~~i~~~~~~-g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~ 135 (215)
T PRK13813 74 EAVFEAGAWGIIVHGFT-----------G------RDSLKAVVEAAAES-GGKVFVVVEMSHPGALEFIQPHADKLAKLA 135 (215)
T ss_pred HHHHhCCCCEEEEcCcC-----------C------HHHHHHHHHHHHhc-CCeEEEEEeCCCCCCCCCHHHHHHHHHHHH
Confidence 55667899999998532 1 12355667776653 45554433222 222233334455556666
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCCCCH-HHHHHHHHcCcCeeEEchHHh
Q 017176 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTV-DEVNAALRKGAHHVMVGRAAY 240 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI~s~-~da~~~l~~Gad~VmiGRa~l 240 (376)
.+.|.+...+.... .+.+.++.+... ++. +..|||... ..+.++++.|+|++.+||+++
T Consensus 136 ~e~G~~g~~~~~~~------------------~~~i~~l~~~~~~~~~-ivdgGI~~~g~~~~~~~~aGad~iV~Gr~I~ 196 (215)
T PRK13813 136 QEAGAFGVVAPATR------------------PERVRYIRSRLGDELK-IISPGIGAQGGKAADAIKAGADYVIVGRSIY 196 (215)
T ss_pred HHhCCCeEEECCCc------------------chhHHHHHHhcCCCcE-EEeCCcCCCCCCHHHHHHcCCCEEEECcccC
Confidence 67887765432200 222334433332 233 377999864 257788889999999999988
Q ss_pred hCCc
Q 017176 241 QNPW 244 (376)
Q Consensus 241 ~~P~ 244 (376)
..+.
T Consensus 197 ~~~d 200 (215)
T PRK13813 197 NAAD 200 (215)
T ss_pred CCCC
Confidence 7665
|
|
| >KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.0061 Score=59.96 Aligned_cols=132 Identities=18% Similarity=0.189 Sum_probs=89.6
Q ss_pred EEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEc
Q 017176 94 INLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH 173 (376)
Q Consensus 94 IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh 173 (376)
.++|.+||..+....+. +.+++..+..+.++.+..++..+.|+ .|.|+-.+..+++ .+ ++-+++.+ .+.+|
T Consensus 290 ~~~~~~~p~~~~~~~~~-~~~~i~k~~~i~d~~~~~~~el~~~~-~k~Rl~~~~~d~~----~~-~~~le~~~--~l~i~ 360 (477)
T KOG2334|consen 290 RGIQEGCPRGKRIQAAQ-TVAQICKAFEIEDIYATLKRELDTPV-CKKRLLVSPADTV----NL-AERLEDLS--ALAIH 360 (477)
T ss_pred hhhhccCchhhHhhcch-hHHHHHHHhcchhHHHhhHHhhcccc-ccceeeeCcchhh----hH-hhhHHhcc--chhhh
Confidence 46688899876555444 77788888888888888888888888 8889865543332 22 22345565 56688
Q ss_pred cCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchh
Q 017176 174 SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 246 (376)
Q Consensus 174 ~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf 246 (376)
+|....+-..++. |+......... .++++.||.+....+- ...++..||..|+...+-.+|
T Consensus 361 ~r~~f~r~~~pa~--------~~~~k~~l~~~-~~~~~~~~~~ye~~~~---~d~lf~si~~~~~~~~~ssi~ 421 (477)
T KOG2334|consen 361 GRKIFDRPTDPAK--------WDTPKMVLADL-CVKTKANGPVYETVQR---TDKLFSSIATARGQKYNSSIW 421 (477)
T ss_pred hcccccccCCCcC--------CCCHHHHHHHh-hhhhcCCCcchhhhhh---hhhhhHHHhhhhhhhhhcccc
Confidence 8765444333333 33333444343 7899999999887774 346788899999998777665
|
|
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=1.4 Score=42.05 Aligned_cols=148 Identities=11% Similarity=0.181 Sum_probs=91.5
Q ss_pred CCEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec-
Q 017176 65 HPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR- 142 (376)
Q Consensus 65 ~p~~vQL~g~-~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR- 142 (376)
.|+++.|=+. +.+ .+..+.++||+-|-+-.+ --.+..+.+...++++-... .+++|-.-+-
T Consensus 78 VPV~lHLDHg~~~e----~i~~ai~~GftSVM~DgS------------~lp~eeNi~~Trevv~~Ah~-~gv~VEaElG~ 140 (285)
T PRK07709 78 VPVAIHLDHGSSFE----KCKEAIDAGFTSVMIDAS------------HHPFEENVETTKKVVEYAHA-RNVSVEAELGT 140 (285)
T ss_pred CcEEEECCCCCCHH----HHHHHHHcCCCEEEEeCC------------CCCHHHHHHHHHHHHHHHHH-cCCEEEEEEec
Confidence 3666666443 322 223444556666655422 11233556677777776553 3555443321
Q ss_pred C-CCCC--------CccHHHHHHHHHHHhhcCCccEEEEccCccc--cCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEE
Q 017176 143 I-GVDD--------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL--LNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 211 (376)
Q Consensus 143 ~-g~~~--------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~--~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi 211 (376)
+ |.++ ..+.++..+|+ ++.|+|.+.|.-++.. |++ .+.++++.+.++.+.. ++|++
T Consensus 141 igg~ed~~~~~~~~yT~peeA~~Fv----~~TgvD~LAvaiGt~HG~Y~~--------~p~L~~~~L~~I~~~~-~iPLV 207 (285)
T PRK07709 141 VGGQEDDVIAEGVIYADPAECKHLV----EATGIDCLAPALGSVHGPYKG--------EPNLGFAEMEQVRDFT-GVPLV 207 (285)
T ss_pred cCCccCCcccccccCCCHHHHHHHH----HHhCCCEEEEeecccccCcCC--------CCccCHHHHHHHHHHH-CCCEE
Confidence 1 2211 13466666554 4789999999877642 222 2457799999988765 99999
Q ss_pred EecCCCCH-HHHHHHHHcCcCeeEEchHHhhC
Q 017176 212 LNGGINTV-DEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 212 ~nGgI~s~-~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
.-|+--.+ +++.++++.|+.=|=|++.+-..
T Consensus 208 LHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a 239 (285)
T PRK07709 208 LHGGTGIPTADIEKAISLGTSKINVNTENQIE 239 (285)
T ss_pred EeCCCCCCHHHHHHHHHcCCeEEEeChHHHHH
Confidence 99987766 67888888999999999887443
|
|
| >PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.064 Score=53.84 Aligned_cols=76 Identities=11% Similarity=-0.012 Sum_probs=53.2
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC--------CCCeEEEecCCCCHHHHHHHHHcCcCeeE
Q 017176 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF--------PDLTFTLNGGINTVDEVNAALRKGAHHVM 234 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~--------~~ipVi~nGgI~s~~da~~~l~~Gad~Vm 234 (376)
++.|+|+|.+..-..... +. ...++..++.+.++.+.. .++||++-||| +.+++.+++++||++|.
T Consensus 317 ~~~gaDYI~lGPIFpT~T----K~-~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~Ni~~vl~aGa~GVA 390 (437)
T PRK12290 317 VQIQPSYIALGHIFPTTT----KQ-MPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-DQSNAEQVWQCGVSSLA 390 (437)
T ss_pred hhcCCCEEEECCccCCCC----CC-CCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-CHHHHHHHHHcCCCEEE
Confidence 358999998865322100 00 112344466665544432 37999999999 99999999999999999
Q ss_pred EchHHhhCCc
Q 017176 235 VGRAAYQNPW 244 (376)
Q Consensus 235 iGRa~l~~P~ 244 (376)
+=|++...++
T Consensus 391 VVSAI~~A~D 400 (437)
T PRK12290 391 VVRAITLAED 400 (437)
T ss_pred EehHhhcCCC
Confidence 9999987665
|
|
| >PRK02227 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.29 Score=45.23 Aligned_cols=129 Identities=17% Similarity=0.068 Sum_probs=69.9
Q ss_pred HHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHh
Q 017176 83 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVS 162 (376)
Q Consensus 83 a~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~ 162 (376)
|..+.+.|+|.||+ |.-..|.-|+ +.|..+.+|++.+... .|++..+---..+..++ ...+..+
T Consensus 13 A~~Al~~GaDiIDv-------K~P~~GaLGA---~~p~vir~Iv~~~~~~--~pvSAtiGD~p~~p~~~---~~aa~~~- 76 (238)
T PRK02227 13 ALEALAGGADIIDV-------KNPKEGSLGA---NFPWVIREIVAAVPGR--KPVSATIGDVPYKPGTI---SLAALGA- 76 (238)
T ss_pred HHHHHhcCCCEEEc-------cCCCCCCCCC---CCHHHHHHHHHHhCCC--CCceeeccCCCCCchHH---HHHHHHH-
Confidence 34466789999999 3344566664 6788888888887754 57777543211121222 2222222
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHH---Hh-hCCCCeEEEecCCC-------CHHHHHHHHH-cCc
Q 017176 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL---LR-DFPDLTFTLNGGIN-------TVDEVNAALR-KGA 230 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~---~~-~~~~ipVi~nGgI~-------s~~da~~~l~-~Ga 230 (376)
..+|+|+|-|--- +.... .-..+.+..+ .+ ..++..|++++=-. ++.++.+... .|+
T Consensus 77 a~~GvDyVKvGl~-----~~~~~------~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf 145 (238)
T PRK02227 77 AATGADYVKVGLY-----GGKTA------EEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGF 145 (238)
T ss_pred HhhCCCEEEEcCC-----CCCcH------HHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCC
Confidence 3589999886321 10000 0012222222 22 22356677665222 4455555554 999
Q ss_pred CeeEEchH
Q 017176 231 HHVMVGRA 238 (376)
Q Consensus 231 d~VmiGRa 238 (376)
|++|+=++
T Consensus 146 ~g~MlDTa 153 (238)
T PRK02227 146 DGAMLDTA 153 (238)
T ss_pred CEEEEecc
Confidence 99999554
|
|
| >PRK08999 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.049 Score=52.57 Aligned_cols=69 Identities=19% Similarity=0.216 Sum_probs=50.3
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHH
Q 017176 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~ 239 (376)
.+.|+|+|.+..--... + + +..++..++.+.++++.. ++||++-||| +.+++.+++++|+|+|.+-+++
T Consensus 243 ~~~~~dyi~~gpvf~t~---t-k--~~~~~~g~~~~~~~~~~~-~~Pv~AiGGI-~~~~~~~~~~~g~~gva~i~~~ 311 (312)
T PRK08999 243 QRLGVDFAVLSPVQPTA---S-H--PGAAPLGWEGFAALIAGV-PLPVYALGGL-GPGDLEEAREHGAQGIAGIRGL 311 (312)
T ss_pred HhcCCCEEEECCCcCCC---C-C--CCCCCCCHHHHHHHHHhC-CCCEEEECCC-CHHHHHHHHHhCCCEEEEEEEe
Confidence 35799999987532210 0 0 012345577777776654 8999999999 9999999999999999987764
|
|
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.084 Score=51.35 Aligned_cols=97 Identities=19% Similarity=0.256 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCC--ccEEEEccCccccCCCCCCCCCCCCcccH
Q 017176 118 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSP--TRHFIIHSRKALLNGISPAENRTIPPLKY 195 (376)
Q Consensus 118 ~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~G--vd~I~vh~r~~~~~g~~~~~~~~~~~~~~ 195 (376)
+++...+.++.++ +..+.|-+..|... +..+++ ..++ ++| +|.|.|..-. |.+. ...
T Consensus 70 ~~e~~~~~~r~~~---~~~l~v~~~vg~~~-~~~~~~----~~Lv-~ag~~~d~i~iD~a~----gh~~--------~~~ 128 (326)
T PRK05458 70 DPEARIPFIKDMH---EQGLIASISVGVKD-DEYDFV----DQLA-AEGLTPEYITIDIAH----GHSD--------SVI 128 (326)
T ss_pred CHHHHHHHHHhcc---ccccEEEEEecCCH-HHHHHH----HHHH-hcCCCCCEEEEECCC----CchH--------HHH
Confidence 4555555554432 22334555555433 223332 2333 465 4999994322 1110 115
Q ss_pred HHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017176 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 196 ~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
+.++++++.+|++||| .|+|.|.+++..+.+.|||++.+|
T Consensus 129 e~I~~ir~~~p~~~vi-~g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 129 NMIQHIKKHLPETFVI-AGNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred HHHHHHHhhCCCCeEE-EEecCCHHHHHHHHHcCcCEEEEC
Confidence 6678888888777654 577889999999999999999877
|
|
| >cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.31 Score=48.02 Aligned_cols=132 Identities=10% Similarity=-0.017 Sum_probs=85.7
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC--ccEEEEecC
Q 017176 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRI 143 (376)
Q Consensus 66 p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~--~pv~vKiR~ 143 (376)
|+-..+...+++.+.+.++...+.||..+-+..|- .+++.-.+.++++|+.++ +.+.+-.--
T Consensus 132 ~~y~s~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~----------------~~~~~d~~~v~air~~~g~~~~l~vDaN~ 195 (355)
T cd03321 132 QAYDSHGLDGAKLATERAVTAAEEGFHAVKTKIGY----------------PTADEDLAVVRSIRQAVGDGVGLMVDYNQ 195 (355)
T ss_pred eEEEeCCCChHHHHHHHHHHHHHhhhHHHhhhcCC----------------CChHhHHHHHHHHHHhhCCCCEEEEeCCC
Confidence 44444444467777777776667799888664321 234555678889998774 445444433
Q ss_pred CCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHH
Q 017176 144 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 223 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~ 223 (376)
+|+ .++.++++ +.+++.++++|.= .+++.+++..+++.+.. ++||.+.-.+.++.++.
T Consensus 196 ~~~----~~~A~~~~-~~l~~~~i~~iEe----------------P~~~~d~~~~~~l~~~~-~ipia~~E~~~~~~~~~ 253 (355)
T cd03321 196 SLT----VPEAIERG-QALDQEGLTWIEE----------------PTLQHDYEGHARIASAL-RTPVQMGENWLGPEEMF 253 (355)
T ss_pred CcC----HHHHHHHH-HHHHcCCCCEEEC----------------CCCCcCHHHHHHHHHhc-CCCEEEcCCCcCHHHHH
Confidence 343 34555544 3456788887761 11222366677777664 89999988899999999
Q ss_pred HHHH-cCcCeeEE
Q 017176 224 AALR-KGAHHVMV 235 (376)
Q Consensus 224 ~~l~-~Gad~Vmi 235 (376)
++++ ..+|.|++
T Consensus 254 ~~i~~~~~d~i~~ 266 (355)
T cd03321 254 KALSAGACDLVMP 266 (355)
T ss_pred HHHHhCCCCeEec
Confidence 9998 56888766
|
MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.17 Score=48.09 Aligned_cols=63 Identities=11% Similarity=0.114 Sum_probs=47.3
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
+.|+|+|.+.. ...+.+.++++.. +++||.+.||| +.+.+.+..++|+|+|.+|.-...-
T Consensus 206 ~~gaDyI~lD~------------------~~~e~l~~~~~~~~~~i~i~AiGGI-t~~ni~~~a~~Gvd~IAvg~l~~sa 266 (277)
T PRK08072 206 AAGADIIMFDN------------------RTPDEIREFVKLVPSAIVTEASGGI-TLENLPAYGGTGVDYISLGFLTHSV 266 (277)
T ss_pred HcCCCEEEECC------------------CCHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHHcCCCEEEEChhhcCC
Confidence 68999998731 1135555655543 25888899999 9999999999999999999866545
Q ss_pred Cch
Q 017176 243 PWY 245 (376)
Q Consensus 243 P~l 245 (376)
|++
T Consensus 267 ~~~ 269 (277)
T PRK08072 267 KAL 269 (277)
T ss_pred ccc
Confidence 554
|
|
| >cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.13 Score=48.80 Aligned_cols=62 Identities=16% Similarity=0.223 Sum_probs=46.8
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
+.|+|+|-+-.-. .+.+.++++... ++|+.+.||| +.+.+.++.++|+|++.+|.-...-
T Consensus 200 ~~gaDyI~ld~~~------------------~e~l~~~~~~~~~~ipi~AiGGI-~~~ni~~~a~~Gvd~Iav~sl~~~a 260 (268)
T cd01572 200 EAGADIIMLDNMS------------------PEELREAVALLKGRVLLEASGGI-TLENIRAYAETGVDYISVGALTHSA 260 (268)
T ss_pred HcCCCEEEECCcC------------------HHHHHHHHHHcCCCCcEEEECCC-CHHHHHHHHHcCCCEEEEEeeecCC
Confidence 5899999875321 344555554432 6999999999 7999999999999999999865544
Q ss_pred Cc
Q 017176 243 PW 244 (376)
Q Consensus 243 P~ 244 (376)
|+
T Consensus 261 ~~ 262 (268)
T cd01572 261 PA 262 (268)
T ss_pred Cc
Confidence 44
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART) | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.029 Score=52.46 Aligned_cols=155 Identities=15% Similarity=0.193 Sum_probs=69.5
Q ss_pred CCCCEEEEecCCCH-HHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCH---HHHHHHHHHHhcc--cCcc
Q 017176 63 EQHPIVLQIGGSNL-DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDP---KFVGEAMSVIAAN--TNVP 136 (376)
Q Consensus 63 ~~~p~~vQL~g~~~-~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~---~~~~eiv~~v~~~--~~~p 136 (376)
.+.|++.=+++.|| -++..-.+.+++.||.+|. |+ |..-.. .|.|...|+..- ++=.|+++..++. ...|
T Consensus 80 ~~tPViaGv~atDP~~~~~~fl~~lk~~Gf~GV~-Nf--PTvgli-DG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~ 155 (268)
T PF09370_consen 80 KDTPVIAGVCATDPFRDMDRFLDELKELGFSGVQ-NF--PTVGLI-DGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTA 155 (268)
T ss_dssp SSS-EEEEE-TT-TT--HHHHHHHHHHHT-SEEE-E---S-GGG---HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--
T ss_pred cCCCEEEEecCcCCCCcHHHHHHHHHHhCCceEE-EC--Ccceee-ccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeee
Confidence 35799999999998 3566677888999999983 54 532111 233333332211 2222334433332 1222
Q ss_pred EEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCccc--HHHHHHH---Hhh-CCCCeE
Q 017176 137 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK--YEYYYAL---LRD-FPDLTF 210 (376)
Q Consensus 137 v~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~--~~~v~~~---~~~-~~~ipV 210 (376)
+.. +.++. .+ +.++|+|.|.+|-+... +|..+... ...+. .+.+.++ +++ .+++-+
T Consensus 156 yvf----------~~e~A----~~-M~~AGaDiiv~H~GlT~-gG~~Ga~~--~~sl~~a~~~~~~i~~aa~~v~~dii~ 217 (268)
T PF09370_consen 156 YVF----------NEEQA----RA-MAEAGADIIVAHMGLTT-GGSIGAKT--ALSLEEAAERIQEIFDAARAVNPDIIV 217 (268)
T ss_dssp EE-----------SHHHH----HH-HHHHT-SEEEEE-SS-------------S--HHHHHHHHHHHHHHHHCC-TT-EE
T ss_pred eec----------CHHHH----HH-HHHcCCCEEEecCCccC-CCCcCccc--cCCHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 211 12232 12 23699999999965321 33222211 11111 1122222 222 245555
Q ss_pred EEe-cCCCCHHHHHHHHH-c-CcCeeEEchHH
Q 017176 211 TLN-GGINTVDEVNAALR-K-GAHHVMVGRAA 239 (376)
Q Consensus 211 i~n-GgI~s~~da~~~l~-~-Gad~VmiGRa~ 239 (376)
+.- |-|.+|+|++.+++ + ||+|..=|..+
T Consensus 218 l~hGGPI~~p~D~~~~l~~t~~~~Gf~G~Ss~ 249 (268)
T PF09370_consen 218 LCHGGPIATPEDAQYVLRNTKGIHGFIGASSM 249 (268)
T ss_dssp EEECTTB-SHHHHHHHHHH-TTEEEEEESTTT
T ss_pred EEeCCCCCCHHHHHHHHhcCCCCCEEecccch
Confidence 544 55999999999998 4 58987766553
|
Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C. |
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.41 E-value=1.8 Score=41.32 Aligned_cols=112 Identities=16% Similarity=0.244 Sum_probs=73.2
Q ss_pred cCCHHHHHHHHHHHhcccCccEEEEec-C-CCCC----------CccHHHHHHHHHHHhhcCCccEEEEccCccc--cCC
Q 017176 116 MLDPKFVGEAMSVIAANTNVPVSVKCR-I-GVDD----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL--LNG 181 (376)
Q Consensus 116 ~~~~~~~~eiv~~v~~~~~~pv~vKiR-~-g~~~----------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~--~~g 181 (376)
..+.+...++++-.+.. ++.|-.-+- + |.++ ..+.++..+|+ ++.|+|++.|.-+|.. |.+
T Consensus 111 eeNi~~T~~vv~~Ah~~-gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv----~~TgvD~LAvaiGt~HG~y~~ 185 (284)
T PRK12737 111 EENIAIVKEVVEFCHRY-DASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFV----ERTGIDSLAVAIGTAHGLYKG 185 (284)
T ss_pred HHHHHHHHHHHHHHHHc-CCEEEEEEeeccCccCCcccccccccCCCHHHHHHHH----HHhCCCEEeeccCccccccCC
Confidence 35566777777766542 444332221 1 1111 12456665554 4689999999877642 222
Q ss_pred CCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCH-HHHHHHHHcCcCeeEEchHHhh
Q 017176 182 ISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV-DEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 182 ~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~-~da~~~l~~Gad~VmiGRa~l~ 241 (376)
.|.++++.++++.+.. ++|++.-||=-.+ +++.++++.|+.=|=|++.+..
T Consensus 186 --------~p~Ld~~~L~~I~~~~-~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi~T~l~~ 237 (284)
T PRK12737 186 --------EPKLDFERLAEIREKV-SIPLVLHGASGVPDEDVKKAISLGICKVNVATELKI 237 (284)
T ss_pred --------CCcCCHHHHHHHHHHh-CCCEEEeCCCCCCHHHHHHHHHCCCeEEEeCcHHHH
Confidence 2457799999997764 8999988876655 5677888899999999998754
|
|
| >TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.19 Score=47.50 Aligned_cols=91 Identities=15% Similarity=0.215 Sum_probs=57.4
Q ss_pred HHHHHHhcccC--ccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHH
Q 017176 124 EAMSVIAANTN--VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL 201 (376)
Q Consensus 124 eiv~~v~~~~~--~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~ 201 (376)
.-++.+|+..+ .++.+-+ ++++++.+ +.+.|+|+|-+..-. .+.++++
T Consensus 166 ~av~~~r~~~~~~~~Igvev-------~t~eea~~-----A~~~gaDyI~ld~~~------------------~e~lk~~ 215 (265)
T TIGR00078 166 KAVKRARAAAPFALKIEVEV-------ESLEEAEE-----AAEAGADIIMLDNMK------------------PEEIKEA 215 (265)
T ss_pred HHHHHHHHhCCCCCeEEEEe-------CCHHHHHH-----HHHcCCCEEEECCCC------------------HHHHHHH
Confidence 34555666543 3444432 24555433 236899999875422 2334444
Q ss_pred HhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 202 LRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 202 ~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
++.. ..+||.+.||| +.+.+.+..++|+|++.+|.-...-|++
T Consensus 216 v~~~~~~ipi~AsGGI-~~~ni~~~a~~Gvd~Isvgait~sa~~~ 259 (265)
T TIGR00078 216 VQLLKGRVLLEASGGI-TLDNLEEYAETGVDVISSGALTHSVPAL 259 (265)
T ss_pred HHHhcCCCcEEEECCC-CHHHHHHHHHcCCCEEEeCHHHcCCCcc
Confidence 4432 14899999999 7999999999999999995443334553
|
Synonym: quinolinate phosphoribosyltransferase (decarboxylating) |
| >COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.4 Score=44.92 Aligned_cols=149 Identities=18% Similarity=0.258 Sum_probs=88.1
Q ss_pred CCCCEEEEecCCC---H----HHHHHHHHHHHHCCCCEEEe--cCCCCCccccCCCCccccccCCHHHHHHHHHHHhc--
Q 017176 63 EQHPIVLQIGGSN---L----DNLAKATELANAYNYDEINL--NCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-- 131 (376)
Q Consensus 63 ~~~p~~vQL~g~~---~----~~~~~aa~~~~~~G~d~Iei--N~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~-- 131 (376)
.+.|++++|.+++ + +.+....+-+..+|+|+|-. |.|+.. +.+.+.++-+.+..
T Consensus 76 ~dvplivkl~~~t~l~~~~~~~~~~~~ve~ai~lgadAV~~~Vy~Gse~---------------e~~~i~~~~~v~~~a~ 140 (265)
T COG1830 76 HDVPLIVKLNGSTSLSPDPNDQVLVATVEDAIRLGADAVGATVYVGSET---------------EREMIENISQVVEDAH 140 (265)
T ss_pred CCcCEEEEeccccccCCCcccceeeeeHHHHHhCCCcEEEEEEecCCcc---------------hHHHHHHHHHHHHHHH
Confidence 3678999998762 2 22223345566788888755 444332 23444444443332
Q ss_pred ccCccEEEEec-CCCCCC---ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCC
Q 017176 132 NTNVPVSVKCR-IGVDDH---DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD 207 (376)
Q Consensus 132 ~~~~pv~vKiR-~g~~~~---~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ 207 (376)
..+.|+.+=+- .|.... +...+.....+++..+.|+|.|-+-- .| +.+-++++++..+
T Consensus 141 ~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~y-----tg------------~~e~F~~vv~~~~- 202 (265)
T COG1830 141 ELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKY-----TG------------DPESFRRVVAACG- 202 (265)
T ss_pred HcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecC-----CC------------ChHHHHHHHHhCC-
Confidence 24788766322 222221 22234455556777789999887431 11 1244566777665
Q ss_pred CeEEEecCCCC--HHHHH----HHHHcCcCeeEEchHHhhCCc
Q 017176 208 LTFTLNGGINT--VDEVN----AALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 208 ipVi~nGgI~s--~~da~----~~l~~Gad~VmiGRa~l~~P~ 244 (376)
+||+..||=.+ .+++. .+++.|+.|+.+||=+...|.
T Consensus 203 vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~~ 245 (265)
T COG1830 203 VPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQHED 245 (265)
T ss_pred CCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhccCC
Confidence 99999999776 33444 445589999999998877665
|
|
| >COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.21 Score=47.28 Aligned_cols=170 Identities=14% Similarity=0.139 Sum_probs=92.9
Q ss_pred ccCCCCCCEEEEecC-CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccE
Q 017176 59 AFSPEQHPIVLQIGG-SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPV 137 (376)
Q Consensus 59 ~~~~~~~p~~vQL~g-~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv 137 (376)
..+..+.|+ |+-| .|+ -.|++++++||+++=+..+.=.......|. |- -..+.+.+.++.|.+.+++||
T Consensus 12 ~l~~~~~~~--~~pg~~d~----~sA~la~~aGF~al~~sg~~vA~slG~pD~-~~---~t~~e~~~~vrrI~~a~~lPv 81 (289)
T COG2513 12 ALHASGDPL--VLPGAWDA----GSALLAERAGFKALYLSGAGVAASLGLPDL-GI---TTLDEVLADARRITDAVDLPV 81 (289)
T ss_pred HHHhCCCCE--EecCCcCH----HHHHHHHHcCCeEEEeccHHHHHhcCCCcc-cc---ccHHHHHHHHHHHHhhcCCce
Confidence 444455544 3433 233 378889999999998864311111111221 21 225778888889999999999
Q ss_pred EEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCcc-ccCCCCCCCCCCCCccc--HHHHHHHHhhCCCCeEEEec
Q 017176 138 SVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-LLNGISPAENRTIPPLK--YEYYYALLRDFPDLTFTLNG 214 (376)
Q Consensus 138 ~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~-~~~g~~~~~~~~~~~~~--~~~v~~~~~~~~~ipVi~nG 214 (376)
+|-+-.|+-+..+..+++ . .++++|+..+++---.. ..-|+- ++..+.+.. .+.|+.+++..++.+++.+.
T Consensus 82 ~vD~dtGfG~~~nvartV---~-~~~~aG~agi~iEDq~~pk~cgh~--~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~A 155 (289)
T COG2513 82 LVDIDTGFGEALNVARTV---R-ELEQAGAAGIHIEDQVGPKRCGHL--PGKELVSIDEMVDRIKAAVEARRDPDFVIIA 155 (289)
T ss_pred EEeccCCCCcHHHHHHHH---H-HHHHcCcceeeeeecccchhcCCC--CCCCcCCHHHHHHHHHHHHHhccCCCeEEEe
Confidence 999999987744444443 3 34679999999853221 111221 111222211 23344444444444444442
Q ss_pred CCCC-----HHH----HHHHHHcCcCeeEEchHHhhCCchh
Q 017176 215 GINT-----VDE----VNAALRKGAHHVMVGRAAYQNPWYT 246 (376)
Q Consensus 215 gI~s-----~~d----a~~~l~~Gad~VmiGRa~l~~P~lf 246 (376)
.... .++ +..+.+.|||++.. ..+.++..|
T Consensus 156 RTda~~~~~ld~AI~Ra~AY~eAGAD~if~--~al~~~e~i 194 (289)
T COG2513 156 RTDALLVEGLDDAIERAQAYVEAGADAIFP--EALTDLEEI 194 (289)
T ss_pred ehHHHHhccHHHHHHHHHHHHHcCCcEEcc--ccCCCHHHH
Confidence 2211 233 23344589998764 455666654
|
|
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.058 Score=54.99 Aligned_cols=61 Identities=23% Similarity=0.372 Sum_probs=47.6
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017176 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
.++|+|.|.|.... |.+. ..++.++++++.++++||++ |+|.|.+++..+++.|||+|-+|
T Consensus 233 ~~aG~d~I~vd~a~----g~~~--------~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 233 VKAGVDVIVIDSSH----GHSI--------YVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALIDAGADGLRVG 293 (450)
T ss_pred HHhCCCEEEEECCC----CcHh--------HHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHHhCCCEEEEC
Confidence 36999999985422 1110 12677888888888999988 99999999999999999999755
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.15 Score=49.52 Aligned_cols=97 Identities=15% Similarity=0.180 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCC--ccEEEEccCccccCCCCCCCCCCCCcccH
Q 017176 118 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSP--TRHFIIHSRKALLNGISPAENRTIPPLKY 195 (376)
Q Consensus 118 ~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~G--vd~I~vh~r~~~~~g~~~~~~~~~~~~~~ 195 (376)
+++...+.++.++.. .+ .+-+..|..+ ++.+.+ ..+. ++| +|.|.+..-. |++. .-+
T Consensus 67 ~~E~~~sfvrk~k~~-~L--~v~~SvG~t~-e~~~r~----~~lv-~a~~~~d~i~~D~ah----g~s~--------~~~ 125 (321)
T TIGR01306 67 DEESRIPFIKDMQER-GL--FASISVGVKA-CEYEFV----TQLA-EEALTPEYITIDIAH----GHSN--------SVI 125 (321)
T ss_pred CHHHHHHHHHhcccc-cc--EEEEEcCCCH-HHHHHH----HHHH-hcCCCCCEEEEeCcc----CchH--------HHH
Confidence 455544445544322 23 4445555544 223333 3333 467 6988875321 1111 115
Q ss_pred HHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017176 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 196 ~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
+.++.+++.+ ..|++..|.|.+.+++..+++.|||+|.+|
T Consensus 126 ~~i~~i~~~~-p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 126 NMIKHIKTHL-PDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred HHHHHHHHhC-CCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 6677887776 568889999999999999999999999877
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >PRK09250 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.79 Score=44.76 Aligned_cols=169 Identities=15% Similarity=0.164 Sum_probs=90.0
Q ss_pred CCCEEEEecCCC--------HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccC-CHHHHHHHHHHHhcccC
Q 017176 64 QHPIVLQIGGSN--------LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLML-DPKFVGEAMSVIAANTN 134 (376)
Q Consensus 64 ~~p~~vQL~g~~--------~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~-~~~~~~eiv~~v~~~~~ 134 (376)
+.|+++.|.++. .+......+.+-+.|+|+|-++. . +|+.-+. ..+.+.+++++.. ..+
T Consensus 125 ~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tv-----y------~Gs~~E~~ml~~l~~i~~ea~-~~G 192 (348)
T PRK09250 125 KIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGATI-----Y------FGSEESRRQIEEISEAFEEAH-ELG 192 (348)
T ss_pred CCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEEE-----e------cCCHHHHHHHHHHHHHHHHHH-HhC
Confidence 567888887642 12233345667788999886653 0 1322111 1233444444432 358
Q ss_pred ccEEEE--ecCC-CCCCc---cHHHHHHHHHHHhhcCCccEEEEccCcc--c-cC-CCCCCCCCCCCcc----cHHHHHH
Q 017176 135 VPVSVK--CRIG-VDDHD---SYNQLCDFIYKVSSLSPTRHFIIHSRKA--L-LN-GISPAENRTIPPL----KYEYYYA 200 (376)
Q Consensus 135 ~pv~vK--iR~g-~~~~~---~~~~~~~~i~~~~e~~Gvd~I~vh~r~~--~-~~-g~~~~~~~~~~~~----~~~~v~~ 200 (376)
+|+.+= -|.. +.+.. +-.+++...+++..+.|+|.|-+---+. . .. ++...+.+...+. .-+.++.
T Consensus 193 lPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~ 272 (348)
T PRK09250 193 LATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRY 272 (348)
T ss_pred CCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHH
Confidence 887762 2321 11211 1235666677888889999998752210 0 00 0000000000011 1234444
Q ss_pred HHhhC--CCCeEEEecCCCC-HH----HHHHH---HHcCcCeeEEchHHhhCCc
Q 017176 201 LLRDF--PDLTFTLNGGINT-VD----EVNAA---LRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 201 ~~~~~--~~ipVi~nGgI~s-~~----da~~~---l~~Gad~VmiGRa~l~~P~ 244 (376)
+++.. ..+||+..||=.. .+ .+.++ ++.|+.||.+||=....|.
T Consensus 273 ~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a~~~i~aGa~Gv~iGRNIfQ~~~ 326 (348)
T PRK09250 273 QVANCYMGRRGLINSGGASKGEDDLLDAVRTAVINKRAGGMGLIIGRKAFQRPM 326 (348)
T ss_pred HHHhhccCCceEEEeCCCCCCHHHHHHHHHHHHHhhhcCCcchhhchhhhcCCc
Confidence 44442 1589999999773 33 34556 6689999999999887775
|
|
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.093 Score=48.99 Aligned_cols=71 Identities=10% Similarity=0.032 Sum_probs=55.4
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.++++|+++|.|-.-....+| +++.+.++++. +++||+..+.|.++.++.++...|||+|.+==+
T Consensus 67 A~~y~~~GA~aISVlTe~~~F~G------------s~~~l~~v~~~-v~~PvL~KDFIid~~QI~ea~~~GADavLLI~~ 133 (247)
T PRK13957 67 AKTYETLGASAISVLTDQSYFGG------------SLEDLKSVSSE-LKIPVLRKDFILDEIQIREARAFGASAILLIVR 133 (247)
T ss_pred HHHHHHCCCcEEEEEcCCCcCCC------------CHHHHHHHHHh-cCCCEEeccccCCHHHHHHHHHcCCCEEEeEHh
Confidence 45567899999988764433333 26777777765 489999999999999999999999999977665
Q ss_pred HhhC
Q 017176 239 AYQN 242 (376)
Q Consensus 239 ~l~~ 242 (376)
+|.+
T Consensus 134 ~L~~ 137 (247)
T PRK13957 134 ILTP 137 (247)
T ss_pred hCCH
Confidence 5543
|
|
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=95.22 E-value=2.3 Score=40.57 Aligned_cols=149 Identities=15% Similarity=0.240 Sum_probs=93.1
Q ss_pred CCCEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017176 64 QHPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 64 ~~p~~vQL~g~-~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
..|++++|=+. +.+ .++++.++||+-|.+-.+ . -.++.+.+...++++..+. .+++|-.-+-
T Consensus 72 ~VPValHLDHg~~~e----~i~~ai~~GFtSVM~DgS-~-----------lp~eeNi~~T~~vv~~Ah~-~gv~VEaElG 134 (282)
T TIGR01858 72 NMPLALHLDHHESLD----DIRQKVHAGVRSAMIDGS-H-----------FPFAQNVKLVKEVVDFCHR-QDCSVEAELG 134 (282)
T ss_pred CCCEEEECCCCCCHH----HHHHHHHcCCCEEeecCC-C-----------CCHHHHHHHHHHHHHHHHH-cCCeEEEEEE
Confidence 45677776543 322 345556667777766532 1 1234566777777776554 3444433221
Q ss_pred -C-CCCC----------CccHHHHHHHHHHHhhcCCccEEEEccCccc--cCCCCCCCCCCCCcccHHHHHHHHhhCCCC
Q 017176 143 -I-GVDD----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL--LNGISPAENRTIPPLKYEYYYALLRDFPDL 208 (376)
Q Consensus 143 -~-g~~~----------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~--~~g~~~~~~~~~~~~~~~~v~~~~~~~~~i 208 (376)
+ |.++ ..+.++..+|+ ++.|+|++.|.-+|.. |++ .|.++++.+.++.+.. ++
T Consensus 135 ~vgg~e~~~~~~~~~~~~T~peea~~Fv----~~TgvD~LAvaiGt~HG~yk~--------~p~Ldf~~L~~I~~~~-~i 201 (282)
T TIGR01858 135 RLGGVEDDLSVDEEDALYTDPQEAKEFV----EATGVDSLAVAIGTAHGLYKK--------TPKLDFDRLAEIREVV-DV 201 (282)
T ss_pred ecCCccCCCccccchhccCCHHHHHHHH----HHHCcCEEecccCccccCcCC--------CCccCHHHHHHHHHHh-CC
Confidence 1 1111 12345655554 4799999999877752 222 2467899999998765 89
Q ss_pred eEEEecCCCCH-HHHHHHHHcCcCeeEEchHHhhC
Q 017176 209 TFTLNGGINTV-DEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 209 pVi~nGgI~s~-~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
|++.-|+--.+ +++.++++.|+.=|=+++.+...
T Consensus 202 PLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a 236 (282)
T TIGR01858 202 PLVLHGASDVPDEDVRRTIELGICKVNVATELKIA 236 (282)
T ss_pred CeEEecCCCCCHHHHHHHHHcCCeEEEeCcHHHHH
Confidence 99988876655 56777888999999999987543
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >PRK08610 fructose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.81 Score=43.74 Aligned_cols=146 Identities=11% Similarity=0.188 Sum_probs=90.1
Q ss_pred CCEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec-
Q 017176 65 HPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR- 142 (376)
Q Consensus 65 ~p~~vQL~g~-~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR- 142 (376)
.|+++.|=+. +.+ .++++.++||+-|-+-.+ --.++.+.+...++++-.+. .+++|-.-+-
T Consensus 78 vPV~lHLDHg~~~e----~i~~ai~~GftSVM~DgS------------~l~~eeNi~~T~~vve~Ah~-~gv~VEaElG~ 140 (286)
T PRK08610 78 IPVAIHLDHGSSFE----KCKEAIDAGFTSVMIDAS------------HSPFEENVATTKKVVEYAHE-KGVSVEAELGT 140 (286)
T ss_pred CCEEEECCCCCCHH----HHHHHHHcCCCEEEEeCC------------CCCHHHHHHHHHHHHHHHHH-cCCEEEEEEec
Confidence 4666666443 322 223445556666655421 11234566677777776553 3444433321
Q ss_pred C-CCCC--------CccHHHHHHHHHHHhhcCCccEEEEccCccc--cCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEE
Q 017176 143 I-GVDD--------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL--LNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 211 (376)
Q Consensus 143 ~-g~~~--------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~--~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi 211 (376)
+ |.++ ..+.++..+|+ ++.|+|.+.|.-++.. |++ -+.++++.+.++.+.. ++|++
T Consensus 141 vgg~ed~~~~~~~~yT~peea~~Fv----~~TgvD~LAvaiGt~HG~Y~~--------~p~Ld~~~L~~I~~~~-~vPLV 207 (286)
T PRK08610 141 VGGQEDDVVADGIIYADPKECQELV----EKTGIDALAPALGSVHGPYKG--------EPKLGFKEMEEIGLST-GLPLV 207 (286)
T ss_pred cCCccCCCCCcccccCCHHHHHHHH----HHHCCCEEEeeccccccccCC--------CCCCCHHHHHHHHHHH-CCCEE
Confidence 1 2211 13456665554 4789999999877642 222 1456789999988765 89999
Q ss_pred EecCCCCH-HHHHHHHHcCcCeeEEchHHh
Q 017176 212 LNGGINTV-DEVNAALRKGAHHVMVGRAAY 240 (376)
Q Consensus 212 ~nGgI~s~-~da~~~l~~Gad~VmiGRa~l 240 (376)
.-||=-.+ +++.++++.|+.=|=+++.+-
T Consensus 208 LHGgSG~~~e~~~~ai~~GI~KiNi~T~l~ 237 (286)
T PRK08610 208 LHGGTGIPTKDIQKAIPFGTAKINVNTENQ 237 (286)
T ss_pred EeCCCCCCHHHHHHHHHCCCeEEEeccHHH
Confidence 99987776 667888889998888888763
|
|
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.19 E-value=2.3 Score=40.61 Aligned_cols=147 Identities=14% Similarity=0.246 Sum_probs=89.7
Q ss_pred CCCEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017176 64 QHPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 64 ~~p~~vQL~g~-~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
..|++++|=+. +. +.++.+.++||+-|.+-.+ --.++.+.+...++++-.+. .++.|-.-+-
T Consensus 74 ~VPV~lHLDHg~~~----e~i~~Ai~~GftSVM~DgS------------~l~~eeNi~~T~~vv~~Ah~-~gv~VEaElG 136 (284)
T PRK09195 74 HHPLALHLDHHEKF----DDIAQKVRSGVRSVMIDGS------------HLPFAQNISLVKEVVDFCHR-FDVSVEAELG 136 (284)
T ss_pred CCCEEEECCCCCCH----HHHHHHHHcCCCEEEeCCC------------CCCHHHHHHHHHHHHHHHHH-cCCEEEEEEe
Confidence 34566555433 22 2233444566666665421 11234566777777776653 3444433221
Q ss_pred -C-CCCC----------CccHHHHHHHHHHHhhcCCccEEEEccCccc--cCCCCCCCCCCCCcccHHHHHHHHhhCCCC
Q 017176 143 -I-GVDD----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL--LNGISPAENRTIPPLKYEYYYALLRDFPDL 208 (376)
Q Consensus 143 -~-g~~~----------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~--~~g~~~~~~~~~~~~~~~~v~~~~~~~~~i 208 (376)
+ |-++ ..+.++..+|+ ++.|+|++.|.-+|.. |.+ .+.++++.++++.+.. ++
T Consensus 137 ~vgg~e~~~~~~~~~~~~T~peea~~Fv----~~TgvD~LAvaiGt~HG~y~~--------~p~Ld~~~L~~I~~~~-~v 203 (284)
T PRK09195 137 RLGGQEDDLQVDEADALYTDPAQAREFV----EATGIDSLAVAIGTAHGMYKG--------EPKLDFDRLENIRQWV-NI 203 (284)
T ss_pred cccCcccCcccccccccCCCHHHHHHHH----HHHCcCEEeeccCccccccCC--------CCcCCHHHHHHHHHHh-CC
Confidence 1 1111 12455665554 4789999999877642 222 2457799999998765 89
Q ss_pred eEEEecCCCCH-HHHHHHHHcCcCeeEEchHHh
Q 017176 209 TFTLNGGINTV-DEVNAALRKGAHHVMVGRAAY 240 (376)
Q Consensus 209 pVi~nGgI~s~-~da~~~l~~Gad~VmiGRa~l 240 (376)
|++.-|+=-.+ +++.++++.|+.=|=+++.+.
T Consensus 204 PLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~ 236 (284)
T PRK09195 204 PLVLHGASGLPTKDIQQTIKLGICKVNVATELK 236 (284)
T ss_pred CeEEecCCCCCHHHHHHHHHcCCeEEEeCcHHH
Confidence 99988875555 567788889999999999886
|
|
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.61 Score=46.01 Aligned_cols=116 Identities=9% Similarity=0.030 Sum_probs=68.3
Q ss_pred ccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCC
Q 017176 113 VSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191 (376)
Q Consensus 113 ~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~ 191 (376)
+..+.+|+ ..+-.+.+|+.. +.|+.+-+-..-....+.++.. +..+..++|++.+|-....... .+...+. .
T Consensus 99 ~~~~~~~~-~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~----~~~~~~~adal~l~l~~~qe~~-~p~g~~~-f 171 (352)
T PRK05437 99 RAALKDPE-LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQ----RAVEMIEADALQIHLNPLQELV-QPEGDRD-F 171 (352)
T ss_pred HhhccChh-hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHH----HHHHhcCCCcEEEeCccchhhc-CCCCccc-H
Confidence 34456777 777788888866 7888775443211111233332 3344568899999853211000 0000000 0
Q ss_pred cccHHHHHHHHhhCCCCeEEE--ecCCCCHHHHHHHHHcCcCeeEEc
Q 017176 192 PLKYEYYYALLRDFPDLTFTL--NGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 192 ~~~~~~v~~~~~~~~~ipVi~--nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
...++.+.++++.. ++||+. +|.-.+.+++..+.+.|+|+|.++
T Consensus 172 ~~~le~i~~i~~~~-~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vs 217 (352)
T PRK05437 172 RGWLDNIAEIVSAL-PVPVIVKEVGFGISKETAKRLADAGVKAIDVA 217 (352)
T ss_pred HHHHHHHHHHHHhh-CCCEEEEeCCCCCcHHHHHHHHHcCCCEEEEC
Confidence 00124566776654 899986 666688999988888999999884
|
|
| >PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.34 Score=47.48 Aligned_cols=154 Identities=14% Similarity=0.111 Sum_probs=79.1
Q ss_pred HHHHHHHHCCCCEEEecCCCCCccccCCCCcccccc-CCHHHHHHHHHHHhcccCccEEEEe---cCCCCCC-c-----c
Q 017176 81 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLM-LDPKFVGEAMSVIAANTNVPVSVKC---RIGVDDH-D-----S 150 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~-~~~~~~~eiv~~v~~~~~~pv~vKi---R~g~~~~-~-----~ 150 (376)
..++.+.+.|+|+|-+++- .+.+. ...+. ...+.+.++.++.+ ..++|+.+-+ ..|-... . .
T Consensus 110 ~sve~a~~~GAdAVk~lv~------~~~d~-~~~~~~~~~~~l~rv~~ec~-~~giPlllE~l~y~~~~~~~~~~~~a~~ 181 (340)
T PRK12858 110 WSVRRIKEAGADAVKLLLY------YRPDE-DDAINDRKHAFVERVGAECR-ANDIPFFLEPLTYDGKGSDKKAEEFAKV 181 (340)
T ss_pred ccHHHHHHcCCCEEEEEEE------eCCCc-chHHHHHHHHHHHHHHHHHH-HcCCceEEEEeccCCCcccccccccccc
Confidence 3467788999999988641 11110 00000 12234555555543 3588987742 1121111 1 1
Q ss_pred HHHHHHHHHHHhh--cCCccEEEEccC-cc-ccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE-ecCCCCHHHHHHH
Q 017176 151 YNQLCDFIYKVSS--LSPTRHFIIHSR-KA-LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-NGGINTVDEVNAA 225 (376)
Q Consensus 151 ~~~~~~~i~~~~e--~~Gvd~I~vh~r-~~-~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~-nGgI~s~~da~~~ 225 (376)
-.+.+....+++. +.|+|.+-+--- .. ...|......-+...-..+.+.++.+.. ++|+|. .||+ +.++..+.
T Consensus 182 ~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~-~~P~vvlsgG~-~~~~f~~~ 259 (340)
T PRK12858 182 KPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDAT-DLPFIFLSAGV-SPELFRRT 259 (340)
T ss_pred CHHHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhC-CCCEEEECCCC-CHHHHHHH
Confidence 1233333445555 599999987421 11 1112111000000000123455666544 788765 7787 66666555
Q ss_pred H----HcCc--CeeEEchHHhhCCc
Q 017176 226 L----RKGA--HHVMVGRAAYQNPW 244 (376)
Q Consensus 226 l----~~Ga--d~VmiGRa~l~~P~ 244 (376)
+ +.|+ .||.+||....++-
T Consensus 260 l~~A~~aGa~f~Gvl~GRniwq~~v 284 (340)
T PRK12858 260 LEFACEAGADFSGVLCGRATWQDGI 284 (340)
T ss_pred HHHHHHcCCCccchhhhHHHHhhhh
Confidence 4 4799 99999999987754
|
|
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=95.16 E-value=3 Score=39.48 Aligned_cols=157 Identities=16% Similarity=0.118 Sum_probs=94.9
Q ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEE
Q 017176 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 140 (376)
Q Consensus 61 ~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vK 140 (376)
.....|+++++.+.+.++..+.++.++++|+|+|-+.. |.. .. ...+.+.+-.++|.+.+++|+.+-
T Consensus 63 ~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~p--P~y--------~~---~~~~~~~~~~~~ia~~~~~pi~iY 129 (281)
T cd00408 63 VAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVP--PYY--------NK---PSQEGIVAHFKAVADASDLPVILY 129 (281)
T ss_pred hCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECC--CcC--------CC---CCHHHHHHHHHHHHhcCCCCEEEE
Confidence 34567999999999999999999999999999999842 331 11 235678888888888889999887
Q ss_pred ecCCCCCC-ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCH
Q 017176 141 CRIGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV 219 (376)
Q Consensus 141 iR~g~~~~-~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~ 219 (376)
-.++.... -+.+ + +.++.+.-.+..|-.+.. +...+.++++...+--.+.+|. -
T Consensus 130 n~P~~tg~~l~~~-~---~~~L~~~~~v~giK~s~~------------------d~~~~~~~~~~~~~~~~v~~G~---d 184 (281)
T cd00408 130 NIPGRTGVDLSPE-T---IARLAEHPNIVGIKDSSG------------------DLDRLTRLIALLGPDFAVLSGD---D 184 (281)
T ss_pred ECccccCCCCCHH-H---HHHHhcCCCEEEEEeCCC------------------CHHHHHHHHHhcCCCeEEEEcc---h
Confidence 55532211 1232 2 233333223333332211 1344445554432222445565 2
Q ss_pred HHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhC
Q 017176 220 DEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256 (376)
Q Consensus 220 ~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 256 (376)
+.+...+..|++|.+.|.+-+ -|.++.+.++....|
T Consensus 185 ~~~~~~l~~G~~G~i~~~~n~-~p~~~~~~~~~~~~g 220 (281)
T cd00408 185 DLLLPALALGADGAISGAANV-APKLAVALYEAARAG 220 (281)
T ss_pred HHHHHHHHcCCCEEEehHHhh-CHHHHHHHHHHHHcC
Confidence 455566678999999888643 477655544443344
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases | Back alignment and domain information |
|---|
Probab=95.14 E-value=2.7 Score=39.98 Aligned_cols=153 Identities=12% Similarity=0.207 Sum_probs=97.0
Q ss_pred CCCCEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe
Q 017176 63 EQHPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 141 (376)
Q Consensus 63 ~~~p~~vQL~g~-~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 141 (376)
...|++++|=+. +.+... .+.++||+-|.+-.+. -.+..+.+...++++-.+.. ++.|-.-+
T Consensus 68 ~~VPV~lHLDH~~~~~~i~----~ai~~GftSVMiD~S~------------l~~eeNi~~t~~vv~~ah~~-gv~VEaEl 130 (276)
T cd00947 68 ASVPVALHLDHGSSFELIK----RAIRAGFSSVMIDGSH------------LPFEENVAKTKEVVELAHAY-GVSVEAEL 130 (276)
T ss_pred CCCCEEEECCCCCCHHHHH----HHHHhCCCEEEeCCCC------------CCHHHHHHHHHHHHHHHHHc-CCeEEEEE
Confidence 356888888655 444333 4456788888875421 12345667777777776543 44433222
Q ss_pred c-C-CCCC--------CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEE
Q 017176 142 R-I-GVDD--------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 211 (376)
Q Consensus 142 R-~-g~~~--------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi 211 (376)
- + |-++ ..+.++..+|+ ++.|+|+|.|+-++..-.+.. ..+.++++.+.++.+.. ++|++
T Consensus 131 G~i~g~e~~~~~~~~~~T~pe~a~~Fv----~~TgvD~LAvsiGt~HG~Y~~-----~~p~L~~~~L~~i~~~~-~vPLV 200 (276)
T cd00947 131 GRIGGEEDGVVGDEGLLTDPEEAEEFV----EETGVDALAVAIGTSHGAYKG-----GEPKLDFDRLKEIAERV-NVPLV 200 (276)
T ss_pred eeecCccCCcccccccCCCHHHHHHHH----HHHCCCEEEeccCccccccCC-----CCCccCHHHHHHHHHHh-CCCEE
Confidence 1 1 1111 12355555543 468999999877664211111 02457799999998875 89999
Q ss_pred EecCCCCH-HHHHHHHHcCcCeeEEchHHhhC
Q 017176 212 LNGGINTV-DEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 212 ~nGgI~s~-~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
.-||=-.+ +++.++++.|+.=|=+++.+...
T Consensus 201 lHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a 232 (276)
T cd00947 201 LHGGSGIPDEQIRKAIKLGVCKININTDLRLA 232 (276)
T ss_pred EeCCCCCCHHHHHHHHHcCCeEEEeChHHHHH
Confidence 99987777 55888888999999999987543
|
TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.44 Score=47.24 Aligned_cols=123 Identities=13% Similarity=0.071 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC--ccEEEEecCCCCCCccHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~--~pv~vKiR~g~~~~~~~~ 152 (376)
.++.+.++++.+.+.||+.+-+..|++... .-.+.++++|+.++ +.+.+-.--+|+. +
T Consensus 143 ~~e~~~~~~~~~~~~G~~~~Klk~g~~~~~----------------~d~~~v~avRe~~g~~~~l~iDan~~~~~----~ 202 (372)
T COG4948 143 PEEMAAEAARALVELGFKALKLKVGVGDGD----------------EDLERVRALREAVGDDVRLMVDANGGWTL----E 202 (372)
T ss_pred CHHHHHHHHHHHHhcCCceEEecCCCCchH----------------HHHHHHHHHHHHhCCCceEEEeCCCCcCH----H
Confidence 578888888888889999999988777532 45577888888774 4455544444443 3
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcC-cC
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AH 231 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~G-ad 231 (376)
+.+++ ++.+++.++.+|- ..+++-+.+..+++.+.. ++||.+.=.+.+..|+.++++.| +|
T Consensus 203 ~A~~~-~~~l~~~~l~~iE----------------eP~~~~d~~~~~~l~~~~-~~PIa~gEs~~~~~~~~~l~~~~a~d 264 (372)
T COG4948 203 EAIRL-ARALEEYGLEWIE----------------EPLPPDDLEGLRELRAAT-STPIAAGESVYTRWDFRRLLEAGAVD 264 (372)
T ss_pred HHHHH-HHHhcccCcceEE----------------CCCCccCHHHHHHHHhcC-CCCEecCcccccHHHHHHHHHcCCCC
Confidence 33343 4455667776655 122333466777777665 49999999999999999999965 78
Q ss_pred eeEE
Q 017176 232 HVMV 235 (376)
Q Consensus 232 ~Vmi 235 (376)
.|++
T Consensus 265 iv~~ 268 (372)
T COG4948 265 IVQP 268 (372)
T ss_pred eecC
Confidence 7765
|
|
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=3.3 Score=39.57 Aligned_cols=116 Identities=16% Similarity=0.161 Sum_probs=71.1
Q ss_pred CCHHHHHHHHHHHhcccCccEEEEec-CCCC-C----------CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCC
Q 017176 117 LDPKFVGEAMSVIAANTNVPVSVKCR-IGVD-D----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 184 (376)
Q Consensus 117 ~~~~~~~eiv~~v~~~~~~pv~vKiR-~g~~-~----------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~ 184 (376)
.+.+...++++-.++ .+++|-..+- +|.. + ..+.++..++ .++.|+|++.+.-++..-.+..+
T Consensus 106 eNi~~t~~vv~~a~~-~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f----~~~TgvD~LAvaiGt~HG~y~~~ 180 (283)
T PRK08185 106 ENVALTKEVVELAHK-VGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDF----VSRTGVDTLAVAIGTAHGIYPKD 180 (283)
T ss_pred HHHHHHHHHHHHHHH-cCCeEEEEEeeccCcccccccccccccCCCHHHHHHH----HHhhCCCEEEeccCcccCCcCCC
Confidence 445556666655443 3555544431 2211 0 1245554444 34679999999544431111110
Q ss_pred CCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCH-HHHHHHHHcCcCeeEEchHHhhC
Q 017176 185 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV-DEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 185 ~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~-~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
..+.++++.++++.+.. ++|++.-||+..+ +++.++++.|+.=|=+++.+...
T Consensus 181 ----~kp~L~~e~l~~I~~~~-~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi~T~l~~a 234 (283)
T PRK08185 181 ----KKPELQMDLLKEINERV-DIPLVLHGGSANPDAEIAESVQLGVGKINISSDMKYA 234 (283)
T ss_pred ----CCCCcCHHHHHHHHHhh-CCCEEEECCCCCCHHHHHHHHHCCCeEEEeChHHHHH
Confidence 12445688999988764 8999999999666 56778888999999999987543
|
|
| >PRK04147 N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=3.4 Score=39.56 Aligned_cols=158 Identities=16% Similarity=0.148 Sum_probs=91.9
Q ss_pred cCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEE
Q 017176 60 FSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSV 139 (376)
Q Consensus 60 ~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~v 139 (376)
......|+++++...+.++..+.++.++++|+|+|-+-. |.- . . ...+.+.+-.++|.+.++.|+.+
T Consensus 69 ~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~--P~y--~-----~----~~~~~l~~~f~~va~a~~lPv~i 135 (293)
T PRK04147 69 EAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVT--PFY--Y-----P----FSFEEICDYYREIIDSADNPMIV 135 (293)
T ss_pred HhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeC--CcC--C-----C----CCHHHHHHHHHHHHHhCCCCEEE
Confidence 344567999999999999999999999999999998753 331 1 1 13466777788888778889888
Q ss_pred EecCCCCCC-ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCC
Q 017176 140 KCRIGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 218 (376)
Q Consensus 140 KiR~g~~~~-~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s 218 (376)
---++.... -+. ++ +.++.+.-.+-.|--+.+ ++..+.++.+..++..| .+|. +
T Consensus 136 Yn~P~~tg~~l~~-~~---l~~L~~~pnvvgiK~s~~------------------d~~~~~~~~~~~~~~~v-~~G~--d 190 (293)
T PRK04147 136 YNIPALTGVNLSL-DQ---FNELFTLPKVIGVKQTAG------------------DLYQLERIRKAFPDKLI-YNGF--D 190 (293)
T ss_pred EeCchhhccCCCH-HH---HHHHhcCCCEEEEEeCCC------------------CHHHHHHHHHhCCCCEE-EEee--h
Confidence 632211111 122 22 233333223333332211 13334445444445433 4442 1
Q ss_pred HHHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhCC
Q 017176 219 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGA 257 (376)
Q Consensus 219 ~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g~ 257 (376)
+.+...+..|++|++.|-+-+ -|..+.+.++....|+
T Consensus 191 -~~~~~~l~~G~~G~is~~~n~-~p~~~~~l~~~~~~gd 227 (293)
T PRK04147 191 -EMFASGLLAGADGAIGSTYNV-NGWRARQIFEAAKAGD 227 (293)
T ss_pred -HHHHHHHHcCCCEEEechhhh-CHHHHHHHHHHHHCCC
Confidence 334455668999999876544 2776555444444453
|
|
| >PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.85 Score=42.04 Aligned_cols=137 Identities=19% Similarity=0.123 Sum_probs=71.6
Q ss_pred HHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHh
Q 017176 83 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVS 162 (376)
Q Consensus 83 a~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~ 162 (376)
|..+.+.|+|.||+ |.-..|.-|+ +.|..+.+|++.+... .|++..+---..+..+... .....
T Consensus 13 A~~a~~~gaDiID~-------K~P~~GaLGA---~~~~vi~~i~~~~~~~--~pvSAtiGDlp~~p~~~~~---aa~~~- 76 (235)
T PF04476_consen 13 AEEALAGGADIIDL-------KNPAEGALGA---LFPWVIREIVAAVPGR--KPVSATIGDLPMKPGTASL---AALGA- 76 (235)
T ss_pred HHHHHhCCCCEEEc-------cCCCCCCCCC---CCHHHHHHHHHHcCCC--CceEEEecCCCCCchHHHH---HHHHH-
Confidence 34466779999999 3344566665 5677777777765432 6777754321111122211 11112
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHH---HhhC-CCCeEEEecCCC-------CHHHHHHHHH-cCc
Q 017176 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL---LRDF-PDLTFTLNGGIN-------TVDEVNAALR-KGA 230 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~---~~~~-~~ipVi~nGgI~-------s~~da~~~l~-~Ga 230 (376)
..+|+|+|-|--- .. ... .-..+.+..+ .+.+ .+..||+++=-. ++-++.+... .|+
T Consensus 77 a~~GvdyvKvGl~----g~-~~~------~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~ 145 (235)
T PF04476_consen 77 AATGVDYVKVGLF----GC-KDY------DEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGF 145 (235)
T ss_pred HhcCCCEEEEecC----CC-CCH------HHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCC
Confidence 2479999987321 00 000 0012222222 2222 345566664221 3445555554 899
Q ss_pred CeeEEchHHhhCCchh
Q 017176 231 HHVMVGRAAYQNPWYT 246 (376)
Q Consensus 231 d~VmiGRa~l~~P~lf 246 (376)
++||+=++.=....+|
T Consensus 146 ~gvMlDTa~Kdg~~L~ 161 (235)
T PF04476_consen 146 DGVMLDTADKDGGSLF 161 (235)
T ss_pred CEEEEecccCCCCchh
Confidence 9999977754445554
|
|
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.43 Score=45.82 Aligned_cols=86 Identities=9% Similarity=0.074 Sum_probs=56.3
Q ss_pred HHHHHHHHCCCCEEEecCCCCCcc-ccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHH
Q 017176 81 KATELANAYNYDEINLNCGCPSPK-VAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 159 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~-v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~ 159 (376)
-.|+.++++||+.+=+...+-... ....|. | + -..+.+.+.++.|...+++||++-+-.|+-+..++.++ +
T Consensus 27 ~SArl~e~aGf~ai~~sg~~~~as~lG~pD~-g--~-l~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~v~r~---V- 98 (294)
T TIGR02319 27 LSAKVIQQAGFPAVHMTGSGTSASMLGLPDL-G--F-TSVSEQAINAKNIVLAVDVPVIMDADAGYGNAMSVWRA---T- 98 (294)
T ss_pred HHHHHHHHcCCCEEEecHHHHHHHHcCCCCc-C--C-CCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHH---H-
Confidence 467888999999997642211110 111232 2 2 24566777888888889999999999888765443333 3
Q ss_pred HHhhcCCccEEEEcc
Q 017176 160 KVSSLSPTRHFIIHS 174 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh~ 174 (376)
+.++++|+..|++--
T Consensus 99 ~~~~~aGaagi~IED 113 (294)
T TIGR02319 99 REFERVGIVGYHLED 113 (294)
T ss_pred HHHHHcCCeEEEEEC
Confidence 334679999999954
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=94.96 E-value=2.6 Score=41.38 Aligned_cols=160 Identities=12% Similarity=0.184 Sum_probs=91.7
Q ss_pred CCEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec-
Q 017176 65 HPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR- 142 (376)
Q Consensus 65 ~p~~vQL~g~-~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR- 142 (376)
.|+++.|=+. +.+ .+..+.++||+-|-+-.+.=...++ -..++.+.+...++++.... .+++|-.-+-
T Consensus 76 VPValHLDHg~~~e----~i~~ai~~GftSVMiDgS~l~~~~~-----~~p~eENI~~Tkevve~Ah~-~Gv~VEaELG~ 145 (347)
T PRK09196 76 IPVVMHQDHGNSPA----TCQRAIQLGFTSVMMDGSLKADGKT-----PASYEYNVDVTRKVVEMAHA-CGVSVEGELGC 145 (347)
T ss_pred CcEEEECCCCCCHH----HHHHHHHcCCCEEEecCCCCcccCC-----CCCHHHHHHHHHHHHHHHHH-cCCeEEEEEee
Confidence 4677776544 322 2344556677777665331000000 11345677777787777643 3554443331
Q ss_pred CC-CC------------------C--CccHHHHHHHHHHHhhcCCccEEEEccCccc--cCCCCCCCCCCCCcccHHHHH
Q 017176 143 IG-VD------------------D--HDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL--LNGISPAENRTIPPLKYEYYY 199 (376)
Q Consensus 143 ~g-~~------------------~--~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~--~~g~~~~~~~~~~~~~~~~v~ 199 (376)
+| .+ + ..+.++..+|+ ++.|+|.+.|.-+|.. |++... ...+.++++.+.
T Consensus 146 vgg~e~~~~g~~~~~~~~~~~~~~~~~T~PeeA~~Fv----~~TgvD~LAvaiGT~HG~Yk~~~~---p~~~~LdfdrL~ 218 (347)
T PRK09196 146 LGSLETGMGGEEDGHGAEGKLSHDQLLTDPEEAADFV----KKTQVDALAIAIGTSHGAYKFTRK---PTGDVLAIDRIK 218 (347)
T ss_pred ccCccccccccccCcccccccchhhcCCCHHHHHHHH----HHhCcCeEhhhhccccCCCCCCCC---CChhhccHHHHH
Confidence 11 11 0 12355655554 4789999998766642 222100 011237899999
Q ss_pred HHHhhCCCCeEEEecCCCCH----------------------HHHHHHHHcCcCeeEEchHHhh
Q 017176 200 ALLRDFPDLTFTLNGGINTV----------------------DEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 200 ~~~~~~~~ipVi~nGgI~s~----------------------~da~~~l~~Gad~VmiGRa~l~ 241 (376)
++.+..+++|++.-|+=-.+ +++.++++.|+.=|=+++.+..
T Consensus 219 eI~~~v~~vPLVLHGgSG~~~~~~~~~~~~g~~~~~~~G~~~e~i~~ai~~GI~KINi~Tdl~~ 282 (347)
T PRK09196 219 EIHARLPNTHLVMHGSSSVPQELLDIINEYGGDMPETYGVPVEEIQEGIKHGVRKVNIDTDLRL 282 (347)
T ss_pred HHHhcCCCCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCceEEeChHHHH
Confidence 98887657999988886553 5677777788888888777643
|
|
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.66 Score=43.96 Aligned_cols=126 Identities=14% Similarity=0.105 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 152 (376)
|.+.+.+-++.+.+.|+++|-++.. +|+ +.+ -..+.-.++++.+++.+ .+||.+.+.. .+..
T Consensus 16 D~~~~~~~i~~l~~~Gv~gi~~~Gs--------tGE-~~~--ls~~Er~~l~~~~~~~~~~~~~vi~gv~~-----~~~~ 79 (281)
T cd00408 16 DLDALRRLVEFLIEAGVDGLVVLGT--------TGE-APT--LTDEERKEVIEAVVEAVAGRVPVIAGVGA-----NSTR 79 (281)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCC--------Ccc-ccc--CCHHHHHHHHHHHHHHhCCCCeEEEecCC-----ccHH
Confidence 6788999999999999999988742 233 322 33444555555555544 4777775543 2344
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE------ecCCCCHHHHHHHH
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAAL 226 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~------nGgI~s~~da~~~l 226 (376)
+.++. ++.+++.|+|++.+..-.-. ..+ ...-++++.++.+. +++||+. .|--.+++.+.++.
T Consensus 80 ~~i~~-a~~a~~~Gad~v~v~pP~y~--~~~-------~~~~~~~~~~ia~~-~~~pi~iYn~P~~tg~~l~~~~~~~L~ 148 (281)
T cd00408 80 EAIEL-ARHAEEAGADGVLVVPPYYN--KPS-------QEGIVAHFKAVADA-SDLPVILYNIPGRTGVDLSPETIARLA 148 (281)
T ss_pred HHHHH-HHHHHHcCCCEEEECCCcCC--CCC-------HHHHHHHHHHHHhc-CCCCEEEEECccccCCCCCHHHHHHHh
Confidence 55553 45567899999999764211 111 01125566677765 5899873 47777888888777
Q ss_pred H
Q 017176 227 R 227 (376)
Q Consensus 227 ~ 227 (376)
+
T Consensus 149 ~ 149 (281)
T cd00408 149 E 149 (281)
T ss_pred c
Confidence 5
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >TIGR00167 cbbA ketose-bisphosphate aldolases | Back alignment and domain information |
|---|
Probab=94.92 E-value=3.7 Score=39.33 Aligned_cols=115 Identities=15% Similarity=0.189 Sum_probs=74.3
Q ss_pred cCCHHHHHHHHHHHhcccCccEEEEec-C-CCCC----------CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCC
Q 017176 116 MLDPKFVGEAMSVIAANTNVPVSVKCR-I-GVDD----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 183 (376)
Q Consensus 116 ~~~~~~~~eiv~~v~~~~~~pv~vKiR-~-g~~~----------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~ 183 (376)
+.+.+...++++-.+. .+++|-.-+- + |-++ ..+.++..+|+ ++.|+|.+.|.-+|..-.+..
T Consensus 114 eeNi~~T~~vv~~Ah~-~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv----~~TgvD~LAvaiGt~HG~y~~ 188 (288)
T TIGR00167 114 EENIELTKKVVERAHK-MGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFV----KLTGVDSLAAAIGNVHGVYKG 188 (288)
T ss_pred HHHHHHHHHHHHHHHH-cCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHH----hccCCcEEeeccCccccccCC
Confidence 4566677777776543 2444433221 1 1111 12345555553 578999999987775211111
Q ss_pred CCCCCCCCc-ccHHHHHHHHhhCCCCeEEEecCCCCH-HHHHHHHHcCcCeeEEchHHhhC
Q 017176 184 PAENRTIPP-LKYEYYYALLRDFPDLTFTLNGGINTV-DEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 184 ~~~~~~~~~-~~~~~v~~~~~~~~~ipVi~nGgI~s~-~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
-+. ++++.+.++.+.. ++|++.-||=-.+ +++.++++.|+.=|=+++.+...
T Consensus 189 ------~p~~Ld~~~L~~I~~~v-~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a 242 (288)
T TIGR00167 189 ------EPKGLDFERLEEIQKYV-NLPLVLHGGSGIPDEEIKKAISLGVVKVNIDTELQIA 242 (288)
T ss_pred ------CCCccCHHHHHHHHHHh-CCCEEEeCCCCCCHHHHHHHHHcCCeEEEcChHHHHH
Confidence 133 6799999997765 9999999988777 57888999999999999987544
|
fructose-bisphosphate and tagatose-bisphosphate aldolase. |
| >PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.16 Score=48.33 Aligned_cols=63 Identities=10% Similarity=0.106 Sum_probs=47.0
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
++|+|+|.+..- ..+.++++++.. +++|+.+.||| +.+.+.++.++|+|++.+|.-...-
T Consensus 207 ~~gaD~I~LD~~------------------~~e~l~~~v~~~~~~i~leAsGGI-t~~ni~~~a~tGvD~Isvg~lt~s~ 267 (277)
T PRK05742 207 AAGADIVMLDEL------------------SLDDMREAVRLTAGRAKLEASGGI-NESTLRVIAETGVDYISIGAMTKDV 267 (277)
T ss_pred HcCCCEEEECCC------------------CHHHHHHHHHHhCCCCcEEEECCC-CHHHHHHHHHcCCCEEEEChhhcCC
Confidence 689999976321 134445544432 48999999999 7999999999999999999866655
Q ss_pred Cch
Q 017176 243 PWY 245 (376)
Q Consensus 243 P~l 245 (376)
|++
T Consensus 268 ~~~ 270 (277)
T PRK05742 268 KAV 270 (277)
T ss_pred ccc
Confidence 654
|
|
| >cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway | Back alignment and domain information |
|---|
Probab=94.91 E-value=1.3 Score=43.69 Aligned_cols=140 Identities=10% Similarity=0.058 Sum_probs=89.4
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC--ccEEEEecC
Q 017176 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRI 143 (376)
Q Consensus 66 p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~--~pv~vKiR~ 143 (376)
|+-.-+.+.+++.+.+.++...+.||..+-+..|-+..+ .+. + .+++.-.+.|+++|+.++ +.+.|-..-
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~---~~~-~----~~~~~D~~~i~avr~~~g~~~~l~vDaN~ 185 (352)
T cd03325 114 RVYSWIGGDRPSDVAEAARARREAGFTAVKMNATEELQW---IDT-S----KKVDAAVERVAALREAVGPDIDIGVDFHG 185 (352)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCccc---CCC-H----HHHHHHHHHHHHHHHhhCCCCEEEEECCC
Confidence 444444456788887777777788999999987643221 111 1 235666788888888763 344444433
Q ss_pred CCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHH
Q 017176 144 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 223 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~ 223 (376)
+|+ ..+..+++ +.+++.|+.+|. . .+++-+++..+++++.. .+||.+.=.+.+++++.
T Consensus 186 ~~~----~~~A~~~~-~~l~~~~i~~iE----e------------P~~~~d~~~~~~L~~~~-~~pia~dEs~~~~~~~~ 243 (352)
T cd03325 186 RVS----KPMAKDLA-KELEPYRLLFIE----E------------PVLPENVEALAEIAART-TIPIATGERLFSRWDFK 243 (352)
T ss_pred CCC----HHHHHHHH-HhccccCCcEEE----C------------CCCccCHHHHHHHHHhC-CCCEEecccccCHHHHH
Confidence 443 33444443 345667887765 1 11222366667777664 89988877789999999
Q ss_pred HHHH-cCcCeeEE
Q 017176 224 AALR-KGAHHVMV 235 (376)
Q Consensus 224 ~~l~-~Gad~Vmi 235 (376)
.+++ ..+|.|++
T Consensus 244 ~~~~~~~~d~v~~ 256 (352)
T cd03325 244 ELLEDGAVDIIQP 256 (352)
T ss_pred HHHHhCCCCEEec
Confidence 9998 56888876
|
D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.12 Score=51.66 Aligned_cols=61 Identities=23% Similarity=0.309 Sum_probs=46.6
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017176 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
.++|+|.|.+.... |.+ ....+.++++++.+|+++ +..|+|.|.+++..+++.|||+|.+|
T Consensus 162 v~aGvDvI~iD~a~----g~~--------~~~~~~v~~ik~~~p~~~-vi~g~V~T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 162 VKAHVDILVIDSAH----GHS--------TRIIELVKKIKTKYPNLD-LIAGNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_pred HhcCCCEEEEECCC----CCC--------hhHHHHHHHHHhhCCCCc-EEEEecCCHHHHHHHHHcCCCEEEEC
Confidence 36999999985432 111 011567788888888877 56799999999999999999999887
|
|
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.23 Score=44.78 Aligned_cols=78 Identities=24% Similarity=0.284 Sum_probs=51.5
Q ss_pred cEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecC
Q 017176 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 215 (376)
Q Consensus 136 pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGg 215 (376)
++..=+|. ++.++..++ .+.+-+.|+..+.|.-++.. ..+.++++.++++++ +++.|.
T Consensus 9 ~iiaVir~--~~~~~a~~~----~~al~~gGi~~iEiT~~t~~---------------a~~~I~~l~~~~p~~-~vGAGT 66 (196)
T PF01081_consen 9 KIIAVIRG--DDPEDAVPI----AEALIEGGIRAIEITLRTPN---------------ALEAIEALRKEFPDL-LVGAGT 66 (196)
T ss_dssp SEEEEETT--SSGGGHHHH----HHHHHHTT--EEEEETTSTT---------------HHHHHHHHHHHHTTS-EEEEES
T ss_pred CEEEEEEc--CCHHHHHHH----HHHHHHCCCCEEEEecCCcc---------------HHHHHHHHHHHCCCC-eeEEEe
Confidence 34444564 333334343 33445799999999877631 267788888888775 799999
Q ss_pred CCCHHHHHHHHHcCcCeeEE
Q 017176 216 INTVDEVNAALRKGAHHVMV 235 (376)
Q Consensus 216 I~s~~da~~~l~~Gad~Vmi 235 (376)
|.|.++++++++.||++++-
T Consensus 67 V~~~e~a~~a~~aGA~FivS 86 (196)
T PF01081_consen 67 VLTAEQAEAAIAAGAQFIVS 86 (196)
T ss_dssp --SHHHHHHHHHHT-SEEEE
T ss_pred ccCHHHHHHHHHcCCCEEEC
Confidence 99999999999999998875
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=94.84 E-value=1.1 Score=43.91 Aligned_cols=110 Identities=15% Similarity=0.091 Sum_probs=66.2
Q ss_pred ccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCcc-EEEEccCccccCCCCCCCCCC
Q 017176 111 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTR-HFIIHSRKALLNGISPAENRT 189 (376)
Q Consensus 111 yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd-~I~vh~r~~~~~g~~~~~~~~ 189 (376)
-|+..+++.+++.++- .++.||.+|.-.. .+++|+...+..+ ...|-. .+.+|.++..+.+. .
T Consensus 182 IgAr~~~N~~LL~~va-----~~~kPViLk~G~~----~ti~E~l~A~e~i-~~~GN~~viL~erG~~tf~~~------~ 245 (335)
T PRK08673 182 IGARNMQNFDLLKEVG-----KTNKPVLLKRGMS----ATIEEWLMAAEYI-LAEGNPNVILCERGIRTFETA------T 245 (335)
T ss_pred ECcccccCHHHHHHHH-----cCCCcEEEeCCCC----CCHHHHHHHHHHH-HHcCCCeEEEEECCCCCCCCc------C
Confidence 3777888888776653 3588999996653 2344555443333 356775 44557555333211 1
Q ss_pred CCcccHHHHHHHHhhCCCCeEEEec----CCCC--HHHHHHHHHcCcCeeEEch
Q 017176 190 IPPLKYEYYYALLRDFPDLTFTLNG----GINT--VDEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 190 ~~~~~~~~v~~~~~~~~~ipVi~nG----gI~s--~~da~~~l~~Gad~VmiGR 237 (376)
...+++..+..+++.+ ++|||+.- |.++ +..+..++..||||++|=.
T Consensus 246 ~~~ldl~ai~~lk~~~-~lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~ 298 (335)
T PRK08673 246 RNTLDLSAVPVIKKLT-HLPVIVDPSHATGKRDLVEPLALAAVAAGADGLIVEV 298 (335)
T ss_pred hhhhhHHHHHHHHHhc-CCCEEEeCCCCCccccchHHHHHHHHHhCCCEEEEEe
Confidence 1234466666666554 79998853 3221 2456667778999999864
|
|
| >cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.22 Score=47.26 Aligned_cols=60 Identities=15% Similarity=0.154 Sum_probs=42.2
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccH-HHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHH
Q 017176 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKY-EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~-~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~ 239 (376)
+.|+|+|-+..-... .. +.+..+.+..+++|+++.||| +.+.+.+..++|+|+|++|.-.
T Consensus 201 ~~gaD~I~ld~~~p~---------------~l~~~~~~~~~~~~~i~i~AsGGI-~~~ni~~~~~~Gvd~I~vsai~ 261 (272)
T cd01573 201 EAGADILQLDKFSPE---------------ELAELVPKLRSLAPPVLLAAAGGI-NIENAAAYAAAGADILVTSAPY 261 (272)
T ss_pred HcCCCEEEECCCCHH---------------HHHHHHHHHhccCCCceEEEECCC-CHHHHHHHHHcCCcEEEEChhh
Confidence 589999887643210 12 222223332357999999999 8999999999999999766644
|
In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. |
| >PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.12 Score=56.06 Aligned_cols=75 Identities=11% Similarity=0.010 Sum_probs=54.6
Q ss_pred CCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC--CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 165 SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP--DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 165 ~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~--~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
+|+|++.+..--.... + ....+++.++.+.++++... ++||++-||| +++++.+++++||++|.+-+++...
T Consensus 127 ~gaDYi~~Gpvf~T~t----K-~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~~~~~~Ga~giAvisai~~a 200 (755)
T PRK09517 127 ALPDVIGIGPVASTAT----K-PDAPPALGVDGIAEIAAVAQDHGIASVAIGGV-GLRNAAELAATGIDGLCVVSAIMAA 200 (755)
T ss_pred CCCCEEEECCccccCC----C-CCCCCCCCHHHHHHHHHhcCcCCCCEEEECCC-CHHHHHHHHHcCCCEEEEehHhhCC
Confidence 3599999875322110 0 01123455777877776552 3999999999 9999999999999999999999976
Q ss_pred Cch
Q 017176 243 PWY 245 (376)
Q Consensus 243 P~l 245 (376)
++.
T Consensus 201 ~d~ 203 (755)
T PRK09517 201 ANP 203 (755)
T ss_pred CCH
Confidence 663
|
|
| >PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.27 Score=46.76 Aligned_cols=67 Identities=13% Similarity=0.147 Sum_probs=47.2
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC--CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017176 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~--~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
++|+|.|-+...+... --+.++.+.+.. +++.+.++||| +.+.+.+..++|+|.+.+|.-...
T Consensus 200 ~agaDiI~LDn~~~e~--------------l~~~v~~l~~~~~~~~~~leaSGGI-~~~ni~~yA~tGvD~Is~galt~s 264 (278)
T PRK08385 200 KAGADIIMLDNMTPEE--------------IREVIEALKREGLRERVKIEVSGGI-TPENIEEYAKLDVDVISLGALTHS 264 (278)
T ss_pred HcCcCEEEECCCCHHH--------------HHHHHHHHHhcCcCCCEEEEEECCC-CHHHHHHHHHcCCCEEEeChhhcC
Confidence 5999988877643210 012233333322 47889999999 999999999999999999987664
Q ss_pred CCch
Q 017176 242 NPWY 245 (376)
Q Consensus 242 ~P~l 245 (376)
-|++
T Consensus 265 a~~~ 268 (278)
T PRK08385 265 VRNF 268 (278)
T ss_pred CCcc
Confidence 5554
|
|
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.80 E-value=1.3 Score=40.30 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=34.1
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCC
Q 017176 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPS 102 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~ 102 (376)
..|++.=|.+.++++-...++.+.+.|++.|||.+-+|.
T Consensus 12 ~~~vI~Vlr~~~~e~a~~~a~Ali~gGi~~IEITl~sp~ 50 (211)
T COG0800 12 AQPVVPVIRGDDVEEALPLAKALIEGGIPAIEITLRTPA 50 (211)
T ss_pred HCCeeEEEEeCCHHHHHHHHHHHHHcCCCeEEEecCCCC
Confidence 457888888999999999999999999999999887664
|
|
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=94.79 E-value=1.5 Score=42.02 Aligned_cols=150 Identities=14% Similarity=0.193 Sum_probs=92.3
Q ss_pred CCCEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017176 64 QHPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 64 ~~p~~vQL~g~-~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
..|++++|=+. +.+ .++.+.++||+-|.+-.+. -.++.+.+...++++..+. .++.|-.-+-
T Consensus 74 ~VPValHLDHg~~~e----~i~~ai~~GFtSVM~DgS~------------lp~eeNi~~T~evv~~Ah~-~gv~VEaElG 136 (286)
T PRK12738 74 NMPLALHLDHHESLD----DIRRKVHAGVRSAMIDGSH------------FPFAENVKLVKSVVDFCHS-QDCSVEAELG 136 (286)
T ss_pred CCCEEEECCCCCCHH----HHHHHHHcCCCeEeecCCC------------CCHHHHHHHHHHHHHHHHH-cCCeEEEEEE
Confidence 45777777544 322 3344556688777775321 1134566777777777654 2444332221
Q ss_pred -C-CCCC----------CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeE
Q 017176 143 -I-GVDD----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF 210 (376)
Q Consensus 143 -~-g~~~----------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipV 210 (376)
+ |.++ ..+.++..+|+ ++.|+|++.|.-+|..-.+. ..|.++++.+.++.+.. ++|+
T Consensus 137 ~igg~ed~~~~~~~~~~~T~peea~~Fv----~~TgvD~LAvaiGt~HG~Y~------~~p~Ldfd~l~~I~~~~-~vPL 205 (286)
T PRK12738 137 RLGGVEDDMSVDAESAFLTDPQEAKRFV----ELTGVDSLAVAIGTAHGLYS------KTPKIDFQRLAEIREVV-DVPL 205 (286)
T ss_pred eeCCccCCcccccchhcCCCHHHHHHHH----HHhCCCEEEeccCcccCCCC------CCCcCCHHHHHHHHHHh-CCCE
Confidence 1 1111 12455555554 47899999998777521111 12567799999998775 8999
Q ss_pred EEecCCCCH-HHHHHHHHcCcCeeEEchHHhh
Q 017176 211 TLNGGINTV-DEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 211 i~nGgI~s~-~da~~~l~~Gad~VmiGRa~l~ 241 (376)
+.-|+=-.+ +++.++.+.|+.=|=+++.+..
T Consensus 206 VLHGgSG~~~e~~~kai~~GI~KiNi~T~l~~ 237 (286)
T PRK12738 206 VLHGASDVPDEFVRRTIELGVTKVNVATELKI 237 (286)
T ss_pred EEeCCCCCCHHHHHHHHHcCCeEEEeCcHHHH
Confidence 988875555 5677888899999999887643
|
|
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=94.76 E-value=1.4 Score=42.89 Aligned_cols=106 Identities=11% Similarity=0.083 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccc-cCCCCCCCCCCCCcccHHHH
Q 017176 120 KFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL-LNGISPAENRTIPPLKYEYY 198 (376)
Q Consensus 120 ~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~-~~g~~~~~~~~~~~~~~~~v 198 (376)
+...+-++..++..+.|+.+.+- | .+ .++..+. ++.++++|+|+|.+|-.... ..+..+. ..+....+.+
T Consensus 85 ~~~~~~i~~~~~~~~~pvi~si~-g-~~---~~~~~~~-a~~~~~~gad~iElN~s~~~~~~~~~g~---~~~~~~~eiv 155 (325)
T cd04739 85 EEYLELIRRAKRAVSIPVIASLN-G-VS---AGGWVDY-ARQIEEAGADALELNIYALPTDPDISGA---EVEQRYLDIL 155 (325)
T ss_pred HHHHHHHHHHHhccCCeEEEEeC-C-CC---HHHHHHH-HHHHHhcCCCEEEEeCCCCCCCCCcccc---hHHHHHHHHH
Confidence 44444455555555789888763 2 22 2344443 34456789999999864311 0111110 1111113455
Q ss_pred HHHHhhCCCCeEEE--ecCCCCHHHHHHHHH-cCcCeeEE
Q 017176 199 YALLRDFPDLTFTL--NGGINTVDEVNAALR-KGAHHVMV 235 (376)
Q Consensus 199 ~~~~~~~~~ipVi~--nGgI~s~~da~~~l~-~Gad~Vmi 235 (376)
.++++. .++||++ ..++.+..++.+++. .|||+|.+
T Consensus 156 ~~v~~~-~~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~ 194 (325)
T cd04739 156 RAVKSA-VTIPVAVKLSPFFSALAHMAKQLDAAGADGLVL 194 (325)
T ss_pred HHHHhc-cCCCEEEEcCCCccCHHHHHHHHHHcCCCeEEE
Confidence 565554 4799985 456666666666665 89999876
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA | Back alignment and domain information |
|---|
Probab=94.73 E-value=1.3 Score=44.74 Aligned_cols=125 Identities=10% Similarity=0.026 Sum_probs=82.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC--ccEEEEecCCCCCCcc
Q 017176 73 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVDDHDS 150 (376)
Q Consensus 73 g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~--~pv~vKiR~g~~~~~~ 150 (376)
+.+++++.+.++...+.||..+-+..| .+++.-.+.++++|+.++ +.+.+-.--+|+
T Consensus 194 ~~~~~~~~~~a~~~~~~Gf~~~KiKvg-----------------~~~~~d~~~v~avRe~vG~~~~L~vDaN~~w~---- 252 (415)
T cd03324 194 GYSDEKLRRLCKEALAQGFTHFKLKVG-----------------ADLEDDIRRCRLAREVIGPDNKLMIDANQRWD---- 252 (415)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCC-----------------CCHHHHHHHHHHHHHhcCCCCeEEEECCCCCC----
Confidence 457788888887777789999987543 134556678888888774 334443333343
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC--CCeEEEecCCCCHHHHHHHHH-
Q 017176 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP--DLTFTLNGGINTVDEVNAALR- 227 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~--~ipVi~nGgI~s~~da~~~l~- 227 (376)
.++.+++ .+.+++.++.+|. . .+++-+++..+++.+... ++||.+.=.+.+..++.++++
T Consensus 253 ~~~A~~~-~~~L~~~~l~~iE----E------------P~~~~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~ 315 (415)
T cd03324 253 VPEAIEW-VKQLAEFKPWWIE----E------------PTSPDDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQA 315 (415)
T ss_pred HHHHHHH-HHHhhccCCCEEE----C------------CCCCCcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHc
Confidence 3344444 3455678887765 1 122223566666666542 599887778999999999998
Q ss_pred cCcCeeEE
Q 017176 228 KGAHHVMV 235 (376)
Q Consensus 228 ~Gad~Vmi 235 (376)
..+|.+++
T Consensus 316 ~a~dil~~ 323 (415)
T cd03324 316 GAIDVVQI 323 (415)
T ss_pred CCCCEEEe
Confidence 55788875
|
rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=94.70 E-value=1.5 Score=40.08 Aligned_cols=131 Identities=12% Similarity=0.083 Sum_probs=78.8
Q ss_pred CCCEEEEecC----CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEE
Q 017176 64 QHPIVLQIGG----SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSV 139 (376)
Q Consensus 64 ~~p~~vQL~g----~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~v 139 (376)
+--+..|+.. .+.....++++.+.++|...+++ + .+ +.++.+++.+++|+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~i~~~a~~~~~~G~~~~~~--~------------------~~----~~~~~i~~~~~iPil~ 65 (219)
T cd04729 10 GLIVSCQALPGEPLHSPEIMAAMALAAVQGGAVGIRA--N------------------GV----EDIRAIRARVDLPIIG 65 (219)
T ss_pred CeEEEccCCCCCCcCcHHHHHHHHHHHHHCCCeEEEc--C------------------CH----HHHHHHHHhCCCCEEE
Confidence 4445556542 25677888999999999888764 1 11 3455566667889865
Q ss_pred EecCCCCCC-----ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEec
Q 017176 140 KCRIGVDDH-----DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 214 (376)
Q Consensus 140 KiR~g~~~~-----~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nG 214 (376)
-.+.++++. .+.++ +. .+.++|+|.|.+....... + +. ....+.+..+++.. ++|++.
T Consensus 66 ~~~~~~~~~~~~ig~~~~~----~~-~a~~aGad~I~~~~~~~~~----p-~~----~~~~~~i~~~~~~g-~~~iiv-- 128 (219)
T cd04729 66 LIKRDYPDSEVYITPTIEE----VD-ALAAAGADIIALDATDRPR----P-DG----ETLAELIKRIHEEY-NCLLMA-- 128 (219)
T ss_pred EEecCCCCCCceeCCCHHH----HH-HHHHcCCCEEEEeCCCCCC----C-CC----cCHHHHHHHHHHHh-CCeEEE--
Confidence 444444321 11222 22 2346999988875432100 0 00 01134555665554 577776
Q ss_pred CCCCHHHHHHHHHcCcCeeEE
Q 017176 215 GINTVDEVNAALRKGAHHVMV 235 (376)
Q Consensus 215 gI~s~~da~~~l~~Gad~Vmi 235 (376)
++.|.+++..+.+.|+|.+.+
T Consensus 129 ~v~t~~ea~~a~~~G~d~i~~ 149 (219)
T cd04729 129 DISTLEEALNAAKLGFDIIGT 149 (219)
T ss_pred ECCCHHHHHHHHHcCCCEEEc
Confidence 688999998888899999865
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.092 Score=54.25 Aligned_cols=61 Identities=18% Similarity=0.337 Sum_probs=46.4
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017176 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
.++|+|.|.+..- .|.+. ..|+.++++++.+|+++| ..|+|.|.++++.+++.|||+|.+|
T Consensus 257 ~~ag~d~i~iD~~----~g~~~--------~~~~~i~~ik~~~p~~~v-i~g~v~t~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 257 VKAGVDVVVLDSS----QGDSI--------YQLEMIKYIKKTYPELDV-IGGNVVTMYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred HHcCCCEEEEeCC----CCCcH--------HHHHHHHHHHHhCCCCcE-EEecCCCHHHHHHHHHcCcCEEEEC
Confidence 4699999998652 22211 126788888888776654 4589999999999999999999765
|
|
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.34 Score=43.95 Aligned_cols=67 Identities=15% Similarity=0.222 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCc
Q 017176 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGA 230 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Ga 230 (376)
.++..+. .+.+.+.|++.|.|.-++.. .++.++++++++++ -+++.|-|.|.++++++++.||
T Consensus 19 ~e~a~~~-~~al~~~Gi~~iEit~~t~~---------------a~~~i~~l~~~~~~-~~vGAGTVl~~~~a~~a~~aGA 81 (204)
T TIGR01182 19 VDDALPL-AKALIEGGLRVLEVTLRTPV---------------ALDAIRLLRKEVPD-ALIGAGTVLNPEQLRQAVDAGA 81 (204)
T ss_pred HHHHHHH-HHHHHHcCCCEEEEeCCCcc---------------HHHHHHHHHHHCCC-CEEEEEeCCCHHHHHHHHHcCC
Confidence 3344433 44556799999999876531 26778888888876 4799999999999999999999
Q ss_pred CeeE
Q 017176 231 HHVM 234 (376)
Q Consensus 231 d~Vm 234 (376)
++++
T Consensus 82 ~Fiv 85 (204)
T TIGR01182 82 QFIV 85 (204)
T ss_pred CEEE
Confidence 9884
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.28 Score=43.14 Aligned_cols=97 Identities=14% Similarity=0.166 Sum_probs=58.6
Q ss_pred HHHHHHHHhcccC-c-cEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHH
Q 017176 122 VGEAMSVIAANTN-V-PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 199 (376)
Q Consensus 122 ~~eiv~~v~~~~~-~-pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~ 199 (376)
+.+.++++++..+ . ++.|.+. +.+++.+. + ++|+|.|-+...+.. .--+.+.
T Consensus 66 i~~av~~~~~~~~~~~~I~VEv~-------~~ee~~ea----~-~~g~d~I~lD~~~~~--------------~~~~~v~ 119 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVEVE-------NLEEAEEA----L-EAGADIIMLDNMSPE--------------DLKEAVE 119 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEEES-------SHHHHHHH----H-HTT-SEEEEES-CHH--------------HHHHHHH
T ss_pred HHHHHHHHHHhCCCCceEEEEcC-------CHHHHHHH----H-HhCCCEEEecCcCHH--------------HHHHHHH
Confidence 4556666666542 2 2555433 34444332 2 489999988754320 0012333
Q ss_pred HHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 200 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 200 ~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
.+....+++.+.++||| +.+.+.+..++|+|.+.+|.....-|++
T Consensus 120 ~l~~~~~~v~ie~SGGI-~~~ni~~ya~~gvD~isvg~~~~~a~~~ 164 (169)
T PF01729_consen 120 ELRELNPRVKIEASGGI-TLENIAEYAKTGVDVISVGSLTHSAPPL 164 (169)
T ss_dssp HHHHHTTTSEEEEESSS-STTTHHHHHHTT-SEEEECHHHHSBE--
T ss_pred HHhhcCCcEEEEEECCC-CHHHHHHHHhcCCCEEEcChhhcCCccc
Confidence 33334567999999999 7888999999999999999987776664
|
4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D .... |
| >PRK14017 galactonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=94.44 E-value=1.9 Score=42.93 Aligned_cols=140 Identities=9% Similarity=0.035 Sum_probs=89.4
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC--ccEEEEecC
Q 017176 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRI 143 (376)
Q Consensus 66 p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~--~pv~vKiR~ 143 (376)
|+-..+.+.+++++.+.++.+.+.||..+-+..|-+.. ..+. ..+++.-.+.++++|+.++ +.+.+-..-
T Consensus 115 ~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~~~~~---~~~~-----~~~~~~d~~~i~avr~~~g~~~~l~vDaN~ 186 (382)
T PRK14017 115 RVYSWIGGDRPADVAEAARARVERGFTAVKMNGTEELQ---YIDS-----PRKVDAAVARVAAVREAVGPEIGIGVDFHG 186 (382)
T ss_pred eEeEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCcCCcc---cccc-----HHHHHHHHHHHHHHHHHhCCCCeEEEECCC
Confidence 44444555688888877777778899999887542111 1111 1235666788899998774 444444333
Q ss_pred CCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHH
Q 017176 144 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 223 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~ 223 (376)
+|+ .++.++++ +.+++.|+.+|. . .+++-+++..+++.+. ..+||.+.=.+.+.+++.
T Consensus 187 ~w~----~~~A~~~~-~~l~~~~~~~iE----e------------P~~~~d~~~~~~L~~~-~~~pIa~dEs~~~~~~~~ 244 (382)
T PRK14017 187 RVH----KPMAKVLA-KELEPYRPMFIE----E------------PVLPENAEALPEIAAQ-TSIPIATGERLFSRWDFK 244 (382)
T ss_pred CCC----HHHHHHHH-HhhcccCCCeEE----C------------CCCcCCHHHHHHHHhc-CCCCEEeCCccCCHHHHH
Confidence 343 33444443 445667877765 1 1222235666777665 489999888899999999
Q ss_pred HHHH-cCcCeeEE
Q 017176 224 AALR-KGAHHVMV 235 (376)
Q Consensus 224 ~~l~-~Gad~Vmi 235 (376)
.+++ ..+|.|++
T Consensus 245 ~li~~~a~d~v~~ 257 (382)
T PRK14017 245 RVLEAGGVDIIQP 257 (382)
T ss_pred HHHHcCCCCeEec
Confidence 9998 45788776
|
|
| >cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R | Back alignment and domain information |
|---|
Probab=94.43 E-value=2.1 Score=42.49 Aligned_cols=193 Identities=12% Similarity=0.124 Sum_probs=107.2
Q ss_pred cCCCCChHHHHHHH--HHhCCCcEE-Eecceeecccccccchhhhh---hccC--C--CCCCEEEEecCCCHHHHHHHHH
Q 017176 15 PMMDWTDNHYRTLA--RLISKHAWL-YTEMLAAETIIYQQGNLDRF---LAFS--P--EQHPIVLQIGGSNLDNLAKATE 84 (376)
Q Consensus 15 PM~~~td~~~r~~~--~~~Gg~gl~-~te~v~~~~~~~~~~~~~~~---~~~~--~--~~~p~~vQL~g~~~~~~~~aa~ 84 (376)
|+ |.+...+..++ ...||++++ --|.+.........++.... ++.. + +..++.+++.+. .+++.+-|+
T Consensus 135 P~-GL~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG~~~~y~~Nita~-~~em~~ra~ 212 (364)
T cd08210 135 PQ-GLSAAELAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANAETGGRTLYAPNVTGP-PTQLLERAR 212 (364)
T ss_pred cc-cCCHHHHHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHhhcCCcceEEEecCCC-HHHHHHHHH
Confidence 87 99999998876 355788877 34555444443322222111 1111 1 335788999875 779999999
Q ss_pred HHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC-ccEEEEecCCCCC----CccHHHHHHHHH
Q 017176 85 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDD----HDSYNQLCDFIY 159 (376)
Q Consensus 85 ~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~-~pv~vKiR~g~~~----~~~~~~~~~~i~ 159 (376)
.++++|.+++-++. . -||-+ .++.+++..+ .|+.. .|.++-. ...+.- ...+.
T Consensus 213 ~a~~~Ga~~vMv~~---~-------~~G~~----------~~~~l~~~~~~l~i~a-Hra~~ga~~~~~~~is~-~~~~~ 270 (364)
T cd08210 213 FAKEAGAGGVLIAP---G-------LTGLD----------TFRELAEDFDFLPILA-HPAFAGAFVSSGDGISH-ALLFG 270 (364)
T ss_pred HHHHcCCCEEEeec---c-------cchHH----------HHHHHHhcCCCcEEEE-ccccccccccCCCcccH-HHHHH
Confidence 99999999999974 1 13421 2333344444 55433 3333211 011111 11245
Q ss_pred HHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhh----CC----CCeEEEecCCCCHHHHHHHHH-cCc
Q 017176 160 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD----FP----DLTFTLNGGINTVDEVNAALR-KGA 230 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~----~~----~ipVi~nGgI~s~~da~~~l~-~Ga 230 (376)
++..-+|+|.+++.+-. .+.. ...+.+.++.+. .. ..|+. +||+ ++..+.++++ .|-
T Consensus 271 kl~RlaGad~~~~~~~~---g~~~---------~~~e~~~~ia~~~~~~~~~iK~~~Pv~-sgG~-~~~~v~~l~~~~G~ 336 (364)
T cd08210 271 TLFRLAGADAVIFPNYG---GRFG---------FSREECQAIADACRRPMGGLKPILPAP-GGGM-SVERAPEMVELYGP 336 (364)
T ss_pred HHHHHhCCCEEEeCCCc---CCcc---------CCHHHHHHHHHHhcCCccccCCCcCcC-CCCc-CHHHHHHHHHHcCC
Confidence 66667899987653211 1110 112223333221 11 23443 4555 5578888887 788
Q ss_pred Ce-eEEchHHhhCCch
Q 017176 231 HH-VMVGRAAYQNPWY 245 (376)
Q Consensus 231 d~-VmiGRa~l~~P~l 245 (376)
|. +++|-++++.|+=
T Consensus 337 Dvil~aGGgi~gHp~g 352 (364)
T cd08210 337 DVMLLIGGSLLRAGDD 352 (364)
T ss_pred cEEEEccccccCCCCC
Confidence 84 5578889999984
|
rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate. |
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=94.36 E-value=2 Score=40.90 Aligned_cols=109 Identities=8% Similarity=0.049 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhcc-cCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHH
Q 017176 119 PKFVGEAMSVIAAN-TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 197 (376)
Q Consensus 119 ~~~~~eiv~~v~~~-~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~ 197 (376)
++...+-+...++. .+.|+.+-++.. + .+++.+. ++.++++|+|+|.++.......... .....+....+.
T Consensus 82 ~~~~~~~i~~~~~~~~~~pvi~si~g~--~---~~~~~~~-a~~~~~~G~d~ielN~~cP~~~~~~--~~~~~~~~~~ei 153 (289)
T cd02810 82 LDVWLQDIAKAKKEFPGQPLIASVGGS--S---KEDYVEL-ARKIERAGAKALELNLSCPNVGGGR--QLGQDPEAVANL 153 (289)
T ss_pred HHHHHHHHHHHHhccCCCeEEEEeccC--C---HHHHHHH-HHHHHHhCCCEEEEEcCCCCCCCCc--ccccCHHHHHHH
Confidence 34444444444444 578888877642 2 2344433 3445578999999987643211100 000011111344
Q ss_pred HHHHHhhCCCCeEEE-ecCCCCHHHH---HHHH-HcCcCeeEEc
Q 017176 198 YYALLRDFPDLTFTL-NGGINTVDEV---NAAL-RKGAHHVMVG 236 (376)
Q Consensus 198 v~~~~~~~~~ipVi~-nGgI~s~~da---~~~l-~~Gad~VmiG 236 (376)
+.++++.. ++||+. .+...+.++. .+++ +.|+|++.+-
T Consensus 154 v~~vr~~~-~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 154 LKAVKAAV-DIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAI 196 (289)
T ss_pred HHHHHHcc-CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 55555544 788874 2333453333 3333 3899999874
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.19 Score=46.74 Aligned_cols=87 Identities=17% Similarity=0.173 Sum_probs=53.7
Q ss_pred HHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCC-CccHHHHHHHHH
Q 017176 81 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD-HDSYNQLCDFIY 159 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~-~~~~~~~~~~i~ 159 (376)
-.|+.++++||++|=+...+=.......|. | + -..+.+.+.++.|...+++||++-+-.|+-+ ..++.++++
T Consensus 20 ~SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~-~--~-lt~~e~~~~~~~I~~~~~iPv~vD~d~GyG~~~~~v~~tv~--- 92 (238)
T PF13714_consen 20 LSARLAERAGFDAIATSGAGVAASLGYPDG-G--L-LTLTEMLAAVRRIARAVSIPVIVDADTGYGNDPENVARTVR--- 92 (238)
T ss_dssp HHHHHHHHTT-SEEEEHHHHHHHHTTS-SS-S----S-HHHHHHHHHHHHHHSSSEEEEE-TTTSSSSHHHHHHHHH---
T ss_pred HHHHHHHHcCCCEEEechHHHHHHcCCCCC-C--C-CCHHHHHHHHHHHHhhhcCcEEEEcccccCchhHHHHHHHH---
Confidence 477889999999987743211110011121 1 1 2456677888888888999999999999876 334444433
Q ss_pred HHhhcCCccEEEEccC
Q 017176 160 KVSSLSPTRHFIIHSR 175 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh~r 175 (376)
.++++|+..|++--.
T Consensus 93 -~~~~aG~agi~IEDq 107 (238)
T PF13714_consen 93 -ELERAGAAGINIEDQ 107 (238)
T ss_dssp -HHHHCT-SEEEEESB
T ss_pred -HHHHcCCcEEEeecc
Confidence 345799999999643
|
... |
| >PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.33 E-value=2.1 Score=40.06 Aligned_cols=109 Identities=13% Similarity=0.122 Sum_probs=62.5
Q ss_pred cccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCcc-EEEEccCccccCCCCCCCCCCC
Q 017176 112 GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTR-HFIIHSRKALLNGISPAENRTI 190 (376)
Q Consensus 112 G~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd-~I~vh~r~~~~~g~~~~~~~~~ 190 (376)
|+..+.+.+++.. +. .+++||.+|.-.. .+.+|+...+..+ .+.|.. .+.+|-++..|. .. ..
T Consensus 105 gs~~~~n~~LL~~----va-~tgkPVilk~G~~----~t~~e~~~A~e~i-~~~Gn~~i~L~eRg~~~Y~--~~----~~ 168 (250)
T PRK13397 105 GARNMQNFEFLKT----LS-HIDKPILFKRGLM----ATIEEYLGALSYL-QDTGKSNIILCERGVRGYD--VE----TR 168 (250)
T ss_pred CcccccCHHHHHH----HH-ccCCeEEEeCCCC----CCHHHHHHHHHHH-HHcCCCeEEEEccccCCCC--Cc----cc
Confidence 5556677655544 33 2589999996532 2345555444433 457875 445563332221 11 11
Q ss_pred CcccHHHHHHHHhhCCCCeEEEe----cCCCC--HHHHHHHHHcCcCeeEEch
Q 017176 191 PPLKYEYYYALLRDFPDLTFTLN----GGINT--VDEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 191 ~~~~~~~v~~~~~~~~~ipVi~n----GgI~s--~~da~~~l~~Gad~VmiGR 237 (376)
..+++..+..+++.+ ++|||.. +|.++ +.-+..++..||||+||=+
T Consensus 169 n~~dl~ai~~lk~~~-~lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~ 220 (250)
T PRK13397 169 NMLDIMAVPIIQQKT-DLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEV 220 (250)
T ss_pred cccCHHHHHHHHHHh-CCCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEEe
Confidence 133455666666555 8999885 55443 2445666778999999854
|
|
| >cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1 | Back alignment and domain information |
|---|
Probab=94.29 E-value=1.8 Score=43.16 Aligned_cols=123 Identities=13% Similarity=0.130 Sum_probs=81.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC--ccEEEEecCCCCCCccHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~--~pv~vKiR~g~~~~~~~~ 152 (376)
+++.+.+.++...+.||..+-+..|- .+++.-.+.|+++|+.++ ..+.|-.--+|+ .+
T Consensus 160 ~~~~~~~~a~~~~~~Gf~~~Kikvg~----------------~~~~~di~~v~avRe~~G~~~~l~vDaN~~w~----~~ 219 (385)
T cd03326 160 DLGRLRDEMRRYLDRGYTVVKIKIGG----------------APLDEDLRRIEAALDVLGDGARLAVDANGRFD----LE 219 (385)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCC----------------CCHHHHHHHHHHHHHhcCCCCeEEEECCCCCC----HH
Confidence 56777777777778899999885431 234555778888888764 455554444443 33
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcC-c-
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-A- 230 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~G-a- 230 (376)
+.+++ .+.+++.++.+|. . .+++-+++..+++.+.. ++||.+.=.+.+..++.++++.+ +
T Consensus 220 ~A~~~-~~~l~~~~~~~iE----e------------P~~~~d~~~~~~L~~~~-~iPIa~gEs~~~~~~~~~li~~~a~~ 281 (385)
T cd03326 220 TAIAY-AKALAPYGLRWYE----E------------PGDPLDYALQAELADHY-DGPIATGENLFSLQDARNLLRYGGMR 281 (385)
T ss_pred HHHHH-HHHhhCcCCCEEE----C------------CCCccCHHHHHHHHhhC-CCCEEcCCCcCCHHHHHHHHHhCCcc
Confidence 44443 3445677777765 1 12233466677777654 89999988899999999999854 3
Q ss_pred ---CeeEE
Q 017176 231 ---HHVMV 235 (376)
Q Consensus 231 ---d~Vmi 235 (376)
|.|++
T Consensus 282 ~~~div~~ 289 (385)
T cd03326 282 PDRDVLQF 289 (385)
T ss_pred ccCCEEEe
Confidence 77665
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.64 Score=41.44 Aligned_cols=158 Identities=19% Similarity=0.256 Sum_probs=92.5
Q ss_pred CCEEEEecCCCHHHHHHHHHHHHHCCCCEEEec--CCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017176 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLN--CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 65 ~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN--~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
..++.+|..+|-..+++-++.+.++|+|++-+. =|.-+++.+ +| --+|+++|+.++.+...-+.
T Consensus 5 ~~I~PSIL~~dfanL~~e~~~~l~~GadwlHlDVMDg~FVpNiT----~G----------~pvV~slR~~~~~~~ffD~H 70 (224)
T KOG3111|consen 5 PKIAPSILSSDFANLAAECKKMLDAGADWLHLDVMDGHFVPNIT----FG----------PPVVESLRKHTGADPFFDVH 70 (224)
T ss_pred ceechhhhccchHHHHHHHHHHHHcCCCeEEEeeecccccCCcc----cc----------hHHHHHHHhccCCCcceeEE
Confidence 345666777776777777788889999987553 344444433 34 24677788877666333333
Q ss_pred CCCCCCccHHHHHHHHHHHhhcCCccEEEEccCc-cc---------cC----CCCCCCC---C----C-----------C
Q 017176 143 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK-AL---------LN----GISPAEN---R----T-----------I 190 (376)
Q Consensus 143 ~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~-~~---------~~----g~~~~~~---~----~-----------~ 190 (376)
+=+.+ .++.++.++ ++|++.+++|--. +. .+ |..-... + . +
T Consensus 71 mMV~~---Peq~V~~~a----~agas~~tfH~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~~~D~vLvMtV 143 (224)
T KOG3111|consen 71 MMVEN---PEQWVDQMA----KAGASLFTFHYEATQKPAELVEKIREKGMKVGLALKPGTPVEDLEPLAEHVDMVLVMTV 143 (224)
T ss_pred EeecC---HHHHHHHHH----hcCcceEEEEEeeccCHHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhccccEEEEEEe
Confidence 32232 223332222 5788888877421 00 00 1100000 0 0 0
Q ss_pred Cccc---------HHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017176 191 PPLK---------YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 191 ~~~~---------~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
.|.. ..-+..+++++|++-+-..||+ +++.+.++.+.||+.+..|++.+.-++
T Consensus 144 ePGFGGQkFme~mm~KV~~lR~kyp~l~ievDGGv-~~~ti~~~a~AGAN~iVaGsavf~a~d 205 (224)
T KOG3111|consen 144 EPGFGGQKFMEDMMPKVEWLREKYPNLDIEVDGGV-GPSTIDKAAEAGANMIVAGSAVFGAAD 205 (224)
T ss_pred cCCCchhhhHHHHHHHHHHHHHhCCCceEEecCCc-CcchHHHHHHcCCCEEEecceeecCCC
Confidence 0000 1234555667888777799999 788999999999999999999876554
|
|
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.14 Score=52.70 Aligned_cols=62 Identities=19% Similarity=0.316 Sum_probs=46.1
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017176 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
+.++|++.|.+..-. |.. ..-++.+..++++++++|||+ |+|.|.+++..+.+.|||+|-+|
T Consensus 236 L~~agvdvivvD~a~----g~~--------~~vl~~i~~i~~~~p~~~vi~-g~v~t~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 236 LVEAGVDVLVVDTAH----GHS--------EGVLDRVREIKAKYPDVQIIA-GNVATAEAARALIEAGADAVKVG 297 (486)
T ss_pred HHHhCCCEEEEECCC----Ccc--------hhHHHHHHHHHhhCCCCCEEE-eccCCHHHHHHHHHcCCCEEEEC
Confidence 346899988874321 110 001566777777777899888 99999999999999999999775
|
|
| >PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.19 E-value=1.3 Score=43.54 Aligned_cols=108 Identities=12% Similarity=0.122 Sum_probs=65.0
Q ss_pred cccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCcc-EEEEccCccccC-CCCCCCCCC
Q 017176 112 GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTR-HFIIHSRKALLN-GISPAENRT 189 (376)
Q Consensus 112 G~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd-~I~vh~r~~~~~-g~~~~~~~~ 189 (376)
|+..+++.+++.+ +. .+++||.+|.-.. .+++|+...+..+. +.|-. .+.+|.+...+. ++.
T Consensus 191 ga~~~~n~~LL~~----va-~t~kPVllk~G~~----~t~ee~~~A~e~i~-~~Gn~~viL~erG~rtf~s~y~------ 254 (352)
T PRK13396 191 GARNMQNFSLLKK----VG-AQDKPVLLKRGMA----ATIDEWLMAAEYIL-AAGNPNVILCERGIRTFDRQYT------ 254 (352)
T ss_pred CcccccCHHHHHH----HH-ccCCeEEEeCCCC----CCHHHHHHHHHHHH-HcCCCeEEEEecCCccCcCCCC------
Confidence 6777778666444 33 3589999996653 24555554444443 56774 555677654321 211
Q ss_pred CCcccHHHHHHHHhhCCCCeEEEec----CCC--CHHHHHHHHHcCcCeeEEc
Q 017176 190 IPPLKYEYYYALLRDFPDLTFTLNG----GIN--TVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 190 ~~~~~~~~v~~~~~~~~~ipVi~nG----gI~--s~~da~~~l~~Gad~VmiG 236 (376)
...+++..+..+++.+ ++|||.+- |-+ .+.-+..++..||||++|=
T Consensus 255 ~~~~dl~ai~~lk~~~-~lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE 306 (352)
T PRK13396 255 RNTLDLSVIPVLRSLT-HLPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIE 306 (352)
T ss_pred CCCcCHHHHHHHHHhh-CCCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEEE
Confidence 1345677787776654 89998762 222 2244555666899999985
|
|
| >PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2 | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.75 Score=43.19 Aligned_cols=141 Identities=14% Similarity=0.132 Sum_probs=83.7
Q ss_pred EEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCcc-EEEEecCCCC
Q 017176 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP-VSVKCRIGVD 146 (376)
Q Consensus 68 ~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~p-v~vKiR~g~~ 146 (376)
+..|...|- ..|++++++|.|.|-+ |-....+. -+|.+.+.-..+.+..-+++|++....+ +.+-+..+..
T Consensus 18 i~~lTaYD~----~~A~~~d~agvD~iLV--GDSlgmv~--~G~~sT~~vtld~mi~h~~aV~Rga~~~~vv~DmPf~sy 89 (261)
T PF02548_consen 18 IVMLTAYDY----PSARIADEAGVDIILV--GDSLGMVV--LGYDSTLPVTLDEMIYHTKAVRRGAPNAFVVADMPFGSY 89 (261)
T ss_dssp EEEEE--SH----HHHHHHHHTT-SEEEE---TTHHHHT--T--SSSTT--HHHHHHHHHHHHHH-TSSEEEEE--TTSS
T ss_pred EEEEecccH----HHHHHHHHcCCCEEEe--CCcHHHhe--eCCCCCcCcCHHHHHHHHHHHHhcCCCceEEecCCcccc
Confidence 456777664 5788899999999877 33333322 1245556667788888999998877444 5566666544
Q ss_pred CCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEe-----------cC
Q 017176 147 DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN-----------GG 215 (376)
Q Consensus 147 ~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~n-----------Gg 215 (376)
. .+.++.++...+++.++|+|++-+.|+... .+.++.+.+. .|||++- ||
T Consensus 90 ~-~s~e~av~nA~rl~ke~GadaVKlEGg~~~----------------~~~i~~l~~~--GIPV~gHiGLtPQ~~~~~GG 150 (261)
T PF02548_consen 90 Q-ASPEQAVRNAGRLMKEAGADAVKLEGGAEI----------------AETIKALVDA--GIPVMGHIGLTPQSVHQLGG 150 (261)
T ss_dssp T-SSHHHHHHHHHHHHHTTT-SEEEEEBSGGG----------------HHHHHHHHHT--T--EEEEEES-GGGHHHHTS
T ss_pred c-CCHHHHHHHHHHHHHhcCCCEEEeccchhH----------------HHHHHHHHHC--CCcEEEEecCchhheeccCC
Confidence 3 455666666677777899999999986421 5667777765 8999885 33
Q ss_pred C----CCHHHHHHHH------H-cCcCeeEE
Q 017176 216 I----NTVDEVNAAL------R-KGAHHVMV 235 (376)
Q Consensus 216 I----~s~~da~~~l------~-~Gad~Vmi 235 (376)
- .|.+++.+++ + .||-++.+
T Consensus 151 yr~qGk~~~~a~~l~~~A~ale~AGaf~ivl 181 (261)
T PF02548_consen 151 YRVQGKTAEEAEKLLEDAKALEEAGAFAIVL 181 (261)
T ss_dssp S--CSTSHHHHHHHHHHHHHHHHHT-SEEEE
T ss_pred ceEEecCHHHHHHHHHHHHHHHHcCccEEee
Confidence 2 2555555443 2 58877764
|
1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D. |
| >PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed | Back alignment and domain information |
|---|
Probab=94.07 E-value=2.1 Score=42.40 Aligned_cols=115 Identities=17% Similarity=0.120 Sum_probs=68.4
Q ss_pred cccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCcc-EEEEccCccccCCCCCCCCCCC
Q 017176 112 GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTR-HFIIHSRKALLNGISPAENRTI 190 (376)
Q Consensus 112 G~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd-~I~vh~r~~~~~g~~~~~~~~~ 190 (376)
|+..+.+.+++.+ +. .++.||.+|.-.. .+++|+...+..+ .+.|.. .+.+|-++..|... ..
T Consensus 208 ~s~~~~n~~LL~~----~a-~~gkPVilk~G~~----~t~~e~~~Ave~i-~~~Gn~~i~L~erg~s~yp~~------~~ 271 (360)
T PRK12595 208 GARNMQNFELLKA----AG-RVNKPVLLKRGLS----ATIEEFIYAAEYI-MSQGNGQIILCERGIRTYEKA------TR 271 (360)
T ss_pred CcccccCHHHHHH----HH-ccCCcEEEeCCCC----CCHHHHHHHHHHH-HHCCCCCEEEECCccCCCCCC------CC
Confidence 6677777655544 33 3588999996652 2344555444444 357774 45556333322110 11
Q ss_pred CcccHHHHHHHHhhCCCCeEEEecCCCC----H--HHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 191 PPLKYEYYYALLRDFPDLTFTLNGGINT----V--DEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 191 ~~~~~~~v~~~~~~~~~ipVi~nGgI~s----~--~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
..+++..+..+++.+ ++||+.+-+=.. . .-+..++..||||++|=+=+ ||..
T Consensus 272 ~~ldl~~i~~lk~~~-~~PV~~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~--dp~~ 329 (360)
T PRK12595 272 NTLDISAVPILKQET-HLPVMVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHP--DPAV 329 (360)
T ss_pred CCcCHHHHHHHHHHh-CCCEEEeCCCCCcchhhHHHHHHHHHHcCCCeEEEEecC--CCCC
Confidence 224677787777765 899999533222 2 24445667899999998766 7765
|
|
| >PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.89 Score=43.05 Aligned_cols=109 Identities=13% Similarity=0.104 Sum_probs=63.8
Q ss_pred cccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccE-EEEccCccccCCCCCCCCCCC
Q 017176 112 GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRH-FIIHSRKALLNGISPAENRTI 190 (376)
Q Consensus 112 G~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~-I~vh~r~~~~~g~~~~~~~~~ 190 (376)
|+..+++.+++.++ ..++.||.+|.... .+++++...+.. +...|-.. +.+|.+.....++ ..
T Consensus 117 ga~~~~n~~LL~~~-----a~~gkPV~lk~G~~----~s~~e~~~A~e~-i~~~Gn~~i~L~~rG~~t~~~Y------~~ 180 (266)
T PRK13398 117 GSRNMQNFELLKEV-----GKTKKPILLKRGMS----ATLEEWLYAAEY-IMSEGNENVVLCERGIRTFETY------TR 180 (266)
T ss_pred CcccccCHHHHHHH-----hcCCCcEEEeCCCC----CCHHHHHHHHHH-HHhcCCCeEEEEECCCCCCCCC------CH
Confidence 66677776665554 34689999996653 134455444333 34577754 4456544211111 11
Q ss_pred CcccHHHHHHHHhhCCCCeEEEe-cCCCC-----HHHHHHHHHcCcCeeEEch
Q 017176 191 PPLKYEYYYALLRDFPDLTFTLN-GGINT-----VDEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 191 ~~~~~~~v~~~~~~~~~ipVi~n-GgI~s-----~~da~~~l~~Gad~VmiGR 237 (376)
..+++..+..+++.+ ++||+.+ .-... ...+..++..||||+||=+
T Consensus 181 ~~vdl~~i~~lk~~~-~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~ 232 (266)
T PRK13398 181 NTLDLAAVAVIKELS-HLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEV 232 (266)
T ss_pred HHHHHHHHHHHHhcc-CCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEec
Confidence 233455566655554 7999993 44444 5566677778999999854
|
|
| >PRK07084 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.01 E-value=2.7 Score=40.78 Aligned_cols=110 Identities=15% Similarity=0.224 Sum_probs=63.0
Q ss_pred cCCHHHHHHHHHHHhcccCccEEEEec-C-CCCC--------CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCC
Q 017176 116 MLDPKFVGEAMSVIAANTNVPVSVKCR-I-GVDD--------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185 (376)
Q Consensus 116 ~~~~~~~~eiv~~v~~~~~~pv~vKiR-~-g~~~--------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~ 185 (376)
..+.+...++++..+. .++.|-.-+- + |.++ ..+.++..+|+ ++.|+|.+.+.-++..-.+..+
T Consensus 122 eeNI~~T~evv~~Ah~-~GvsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv----~~TgvD~LAvaiGt~HG~Y~~~- 195 (321)
T PRK07084 122 EENVALTKKVVEYAHQ-FDVTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFV----KKTGVDSLAISIGTSHGAYKFK- 195 (321)
T ss_pred HHHHHHHHHHHHHHHH-cCCeEEEEEeeecCccCCccCcccccCCHHHHHHHH----HHhCCCEEeeccccccccccCC-
Confidence 3455666677666543 3444433221 1 1111 12355655554 4689999999877642111110
Q ss_pred CCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcC
Q 017176 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAH 231 (376)
Q Consensus 186 ~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad 231 (376)
+....+.++++.++++.+..+++|++.-|+=-.+++..+.+. .|.|
T Consensus 196 ~~~~~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~~~~g~~ 242 (321)
T PRK07084 196 PGQCPPPLRFDILEEIEKRIPGFPIVLHGSSSVPQEYVKTINEYGGK 242 (321)
T ss_pred CCCCCCccCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHHHHHHhcCc
Confidence 000025678999999888765799999999877765555554 4443
|
|
| >COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.93 E-value=4.9 Score=36.61 Aligned_cols=181 Identities=15% Similarity=0.202 Sum_probs=100.4
Q ss_pred CCCChHHHHHHHHHhCCCcEEEecceeecccccc--cchhhhhhccCCCCCCEEEEecCC-CHHHHHHHHHHHHHCCCCE
Q 017176 17 MDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ--QGNLDRFLAFSPEQHPIVLQIGGS-NLDNLAKATELANAYNYDE 93 (376)
Q Consensus 17 ~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~--~~~~~~~~~~~~~~~p~~vQL~g~-~~~~~~~aa~~~~~~G~d~ 93 (376)
+|.|...=..++...| + .+.+++.+..--+. .....++.+.-+. .+ .+-++-+ +++ +..+.+++.+.|.
T Consensus 7 CGlt~~eda~~a~~~g-a--d~iG~If~~~SpR~Vs~~~a~~i~~~v~~-~~-~VgVf~n~~~~---~i~~i~~~~~ld~ 78 (208)
T COG0135 7 CGLTRLEDAKAAAKAG-A--DYIGFIFVPKSPRYVSPEQAREIASAVPK-VK-VVGVFVNESIE---EILEIAEELGLDA 78 (208)
T ss_pred CCCCCHHHHHHHHHcC-C--CEEEEEEcCCCCCcCCHHHHHHHHHhCCC-CC-EEEEECCCCHH---HHHHHHHhcCCCE
Confidence 4667766666666554 3 34445554421111 1122233332222 22 3334443 333 3455667788999
Q ss_pred EEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEc
Q 017176 94 INLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH 173 (376)
Q Consensus 94 IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh 173 (376)
|.||.- .+++++ +.++...++||.-=++..-.. +. +. ......-+|.+.+.
T Consensus 79 VQlHG~-----------------e~~~~~----~~l~~~~~~~v~kai~v~~~~--~~-~~-----~~~~~~~~d~~LlD 129 (208)
T COG0135 79 VQLHGD-----------------EDPEYI----DQLKEELGVPVIKAISVSEEG--DL-EL-----AAREEGPVDAILLD 129 (208)
T ss_pred EEECCC-----------------CCHHHH----HHHHhhcCCceEEEEEeCCcc--ch-hh-----hhhccCCccEEEEc
Confidence 999842 233333 344444456665444543221 11 11 11234668888887
Q ss_pred cCccc-cCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCc-CeeEEchHHhhCCch
Q 017176 174 SRKAL-LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGA-HHVMVGRAAYQNPWY 245 (376)
Q Consensus 174 ~r~~~-~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Ga-d~VmiGRa~l~~P~l 245 (376)
..... ++|. + ...+|..+... ....|++..||| +++.+.++++.++ .+|=+.+|.=.+|-.
T Consensus 130 a~~~~~~GGt-G------~~fDW~~l~~~---~~~~~~~LAGGL-~p~NV~~ai~~~~p~gvDvSSGVE~~pG~ 192 (208)
T COG0135 130 AKVPGLPGGT-G------QTFDWNLLPKL---RLSKPVMLAGGL-NPDNVAEAIALGPPYGVDVSSGVESSPGI 192 (208)
T ss_pred CCCCCCCCCC-C------cEECHHHhccc---cccCCEEEECCC-CHHHHHHHHHhcCCceEEeccccccCCCC
Confidence 65432 2332 2 12346655443 136789999999 8999999999777 999999999888853
|
|
| >PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=93.92 E-value=6.1 Score=37.76 Aligned_cols=149 Identities=13% Similarity=0.250 Sum_probs=90.0
Q ss_pred CCCEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017176 64 QHPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 64 ~~p~~vQL~g~-~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
..|++++|=+. +.+ ....+.++||+-|.+-.+ --.++.+.+...++++-.+. .++.|-.-+-
T Consensus 74 ~VPValHLDH~~~~e----~i~~ai~~GftSVM~DgS------------~lp~eeNi~~T~~vv~~Ah~-~gvsVEaElG 136 (284)
T PRK12857 74 SVPVALHLDHGTDFE----QVMKCIRNGFTSVMIDGS------------KLPLEENIALTKKVVEIAHA-VGVSVEAELG 136 (284)
T ss_pred CCCEEEECCCCCCHH----HHHHHHHcCCCeEEEeCC------------CCCHHHHHHHHHHHHHHHHH-cCCEEEEEee
Confidence 34666666433 222 233444456666665421 11234566777777776653 3443332221
Q ss_pred -C-CCCC----------CccHHHHHHHHHHHhhcCCccEEEEccCccc--cCCCCCCCCCCCCcccHHHHHHHHhhCCCC
Q 017176 143 -I-GVDD----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL--LNGISPAENRTIPPLKYEYYYALLRDFPDL 208 (376)
Q Consensus 143 -~-g~~~----------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~--~~g~~~~~~~~~~~~~~~~v~~~~~~~~~i 208 (376)
+ |-++ ..+.++..+|+ ++.|+|.+.|.-++.. |.+ .+.++++.+.++.+.. ++
T Consensus 137 ~vgg~e~~~~~~~~~~~~T~pe~a~~Fv----~~TgvD~LAvaiGt~HG~y~~--------~p~Ld~~~L~~i~~~~-~v 203 (284)
T PRK12857 137 KIGGTEDDITVDEREAAMTDPEEARRFV----EETGVDALAIAIGTAHGPYKG--------EPKLDFDRLAKIKELV-NI 203 (284)
T ss_pred ecCCccCCCCcccchhhcCCHHHHHHHH----HHHCCCEEeeccCccccccCC--------CCcCCHHHHHHHHHHh-CC
Confidence 1 1111 12455555554 4789999999877642 222 2457799999998765 89
Q ss_pred eEEEecCCCCH-HHHHHHHHcCcCeeEEchHHhhC
Q 017176 209 TFTLNGGINTV-DEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 209 pVi~nGgI~s~-~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
|++.-||=-.+ +++.++++.|+.=|=+++.+...
T Consensus 204 PLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~~~a 238 (284)
T PRK12857 204 PIVLHGSSGVPDEAIRKAISLGVRKVNIDTNIREA 238 (284)
T ss_pred CEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHHHHH
Confidence 99988876655 56777888999999999987544
|
|
| >PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.72 Score=44.13 Aligned_cols=67 Identities=16% Similarity=0.167 Sum_probs=46.3
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017176 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
++|+|.|-+...+.. .+ -+.+..+.+..+++.+.++||| +.+.+.+..++|+|.+.+|.-...-|
T Consensus 217 ~~gaDiI~LDnm~~e-------------~v-k~av~~~~~~~~~v~ieaSGGI-~~~ni~~yA~tGvD~Is~galt~sa~ 281 (289)
T PRK07896 217 AEGAELVLLDNFPVW-------------QT-QEAVQRRDARAPTVLLESSGGL-TLDTAAAYAETGVDYLAVGALTHSVP 281 (289)
T ss_pred HcCCCEEEeCCCCHH-------------HH-HHHHHHHhccCCCEEEEEECCC-CHHHHHHHHhcCCCEEEeChhhcCCC
Confidence 589999988743310 00 1122222223467889999999 88999999999999999998666455
Q ss_pred ch
Q 017176 244 WY 245 (376)
Q Consensus 244 ~l 245 (376)
++
T Consensus 282 ~~ 283 (289)
T PRK07896 282 VL 283 (289)
T ss_pred cc
Confidence 54
|
|
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.8 Score=41.87 Aligned_cols=68 Identities=10% Similarity=0.068 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCC--eEEEecCCCCHHHHHHHHHc
Q 017176 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDL--TFTLNGGINTVDEVNAALRK 228 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~i--pVi~nGgI~s~~da~~~l~~ 228 (376)
.++..+. ++.+.+.|+..+.|.-++.. ..+.+.++++++++- -+||.|-|.|.++++++++.
T Consensus 24 ~~~a~~~-~~al~~~Gi~~iEit~~~~~---------------a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~a 87 (213)
T PRK06552 24 KEEALKI-SLAVIKGGIKAIEVTYTNPF---------------ASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILA 87 (213)
T ss_pred HHHHHHH-HHHHHHCCCCEEEEECCCcc---------------HHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHc
Confidence 3344443 44556799999999876531 267788888776432 37999999999999999999
Q ss_pred CcCeeE
Q 017176 229 GAHHVM 234 (376)
Q Consensus 229 Gad~Vm 234 (376)
||++++
T Consensus 88 GA~Fiv 93 (213)
T PRK06552 88 GAQFIV 93 (213)
T ss_pred CCCEEE
Confidence 999988
|
|
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.57 Score=42.44 Aligned_cols=61 Identities=11% Similarity=0.140 Sum_probs=48.9
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEE
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 235 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vmi 235 (376)
++.+.+.|+..|.|.-++.. ..+.+.++++++++ -+|+.|-|.|.++++++++.|+++++-
T Consensus 22 a~al~~gGi~~iEit~~tp~---------------a~~~I~~l~~~~~~-~~vGAGTVl~~e~a~~ai~aGA~FivS 82 (201)
T PRK06015 22 ARALAAGGLPAIEITLRTPA---------------ALDAIRAVAAEVEE-AIVGAGTILNAKQFEDAAKAGSRFIVS 82 (201)
T ss_pred HHHHHHCCCCEEEEeCCCcc---------------HHHHHHHHHHHCCC-CEEeeEeCcCHHHHHHHHHcCCCEEEC
Confidence 34455799999999876531 26778888877765 479999999999999999999998774
|
|
| >PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.29 Score=50.57 Aligned_cols=74 Identities=12% Similarity=0.067 Sum_probs=52.4
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcC---eeEEchHH
Q 017176 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH---HVMVGRAA 239 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad---~VmiGRa~ 239 (376)
.+.|+|+|.+..-... . + +. ..++..++.+.++.+. .++||++-||| +++++.+++++|++ +|.+++++
T Consensus 407 ~~~gadyi~~gpif~t--~-t-k~--~~~~~g~~~~~~~~~~-~~~Pv~aiGGI-~~~~~~~~~~~G~~~~~gvav~~~i 478 (502)
T PLN02898 407 WKDGADYIGCGGVFPT--N-T-KA--NNKTIGLDGLREVCEA-SKLPVVAIGGI-SASNAASVMESGAPNLKGVAVVSAL 478 (502)
T ss_pred hhcCCCEEEECCeecC--C-C-CC--CCCCCCHHHHHHHHHc-CCCCEEEECCC-CHHHHHHHHHcCCCcCceEEEEeHH
Confidence 3578999886532111 0 0 00 1234457777777664 48999999999 59999999998888 99999999
Q ss_pred hhCCc
Q 017176 240 YQNPW 244 (376)
Q Consensus 240 l~~P~ 244 (376)
+..+.
T Consensus 479 ~~~~d 483 (502)
T PLN02898 479 FDQED 483 (502)
T ss_pred hcCCC
Confidence 86544
|
|
| >TIGR01334 modD putative molybdenum utilization protein ModD | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.6 Score=44.40 Aligned_cols=96 Identities=15% Similarity=0.123 Sum_probs=61.3
Q ss_pred HHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHH
Q 017176 121 FVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 199 (376)
Q Consensus 121 ~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~ 199 (376)
-+.+.++.+|+.. ..++.|-+ ++.++..+ ++ ++|+|.|.+|..+... ..+.+.
T Consensus 174 ~i~~av~~~r~~~~~~kIeVEv-------~tleea~e----a~-~~GaDiI~lDn~~~e~--------------l~~~v~ 227 (277)
T TIGR01334 174 DWGGAIGRLKQTAPERKITVEA-------DTIEQALT----VL-QASPDILQLDKFTPQQ--------------LHHLHE 227 (277)
T ss_pred cHHHHHHHHHHhCCCCCEEEEC-------CCHHHHHH----HH-HcCcCEEEECCCCHHH--------------HHHHHH
Confidence 3556777777653 34455543 24555433 22 6999999999644210 012233
Q ss_pred HHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017176 200 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 200 ~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
.+....+++.|.++||| +++.+.+..++|+|.+.+|--..+.|
T Consensus 228 ~l~~~~~~~~leasGGI-~~~ni~~ya~~GvD~is~gal~~a~~ 270 (277)
T TIGR01334 228 RLKFFDHIPTLAAAGGI-NPENIADYIEAGIDLFITSAPYYAAP 270 (277)
T ss_pred HHhccCCCEEEEEECCC-CHHHHHHHHhcCCCEEEeCcceecCc
Confidence 33222357889999999 89999999999999999987544444
|
The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown. |
| >PRK05835 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=2.7 Score=40.54 Aligned_cols=132 Identities=14% Similarity=0.221 Sum_probs=75.8
Q ss_pred CCEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec-
Q 017176 65 HPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR- 142 (376)
Q Consensus 65 ~p~~vQL~g~-~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR- 142 (376)
.|+++.|=+. +.+ .++.+.++||+-|.+-.+. -.++.+.+...++++-.+. .++.|-.-+-
T Consensus 75 VPValHLDHg~~~e----~i~~ai~~GftSVM~DgS~------------l~~eeNi~~T~~vve~Ah~-~gv~VEaElG~ 137 (307)
T PRK05835 75 IPVALHLDHGTTFE----SCEKAVKAGFTSVMIDASH------------HAFEENLELTSKVVKMAHN-AGVSVEAELGR 137 (307)
T ss_pred CeEEEECCCCCCHH----HHHHHHHcCCCEEEEeCCC------------CCHHHHHHHHHHHHHHHHH-cCCEEEEEecc
Confidence 4666666543 322 2344555677766664321 1123556666777766543 2444333221
Q ss_pred C-CCCC----------CccHHHHHHHHHHHhhcCCccEEEEccCccc--cCCCCCCCCCCCCcccHHHHHHHHhhCCCCe
Q 017176 143 I-GVDD----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL--LNGISPAENRTIPPLKYEYYYALLRDFPDLT 209 (376)
Q Consensus 143 ~-g~~~----------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~--~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ip 209 (376)
+ |.++ ..+.++..+|+ ++.|+|++.|.-++.. |+.. ..|.++++.+.++.+.. ++|
T Consensus 138 vgg~ed~~~~~~~~~~~TdPeeA~~Fv----~~TgvD~LAvaiGt~HG~Yk~~------~~p~L~f~~L~~I~~~~-~iP 206 (307)
T PRK05835 138 LMGIEDNISVDEKDAVLVNPKEAEQFV----KESQVDYLAPAIGTSHGAFKFK------GEPKLDFERLQEVKRLT-NIP 206 (307)
T ss_pred cCCccCCcccccccccCCCHHHHHHHH----HhhCCCEEEEccCccccccCCC------CCCccCHHHHHHHHHHh-CCC
Confidence 1 1111 12345555554 4789999999877642 2200 12567899999998765 999
Q ss_pred EEEecCCCCHHHHHH
Q 017176 210 FTLNGGINTVDEVNA 224 (376)
Q Consensus 210 Vi~nGgI~s~~da~~ 224 (376)
++.-|+=-.+++..+
T Consensus 207 LVLHGgSGip~e~~~ 221 (307)
T PRK05835 207 LVLHGASAIPDDVRK 221 (307)
T ss_pred EEEeCCCCCchHHhh
Confidence 999999888886433
|
|
| >cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) | Back alignment and domain information |
|---|
Probab=93.76 E-value=6.5 Score=37.48 Aligned_cols=156 Identities=14% Similarity=0.102 Sum_probs=90.0
Q ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEE
Q 017176 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSV 139 (376)
Q Consensus 61 ~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~v 139 (376)
.....|+++++.+.+.++..+.|+.++++|+|++-+- .|... . .+.+.+.+-.+.|.+++ ++||.+
T Consensus 67 ~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~--~P~y~-------~----~~~~~i~~~~~~v~~a~~~lpi~i 133 (288)
T cd00954 67 AKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAI--TPFYY-------K----FSFEEIKDYYREIIAAAASLPMII 133 (288)
T ss_pred hCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEe--CCCCC-------C----CCHHHHHHHHHHHHHhcCCCCEEE
Confidence 3456689999999999999999999999999999874 24321 1 23466788888888888 899988
Q ss_pred EecCCCCCC-ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCCC
Q 017176 140 KCRIGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGIN 217 (376)
Q Consensus 140 KiR~g~~~~-~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI~ 217 (376)
---++.... -+. ++ +.++.+.-.+-.|-.+.+ +...+.++++..+ ++.| .+|.
T Consensus 134 Yn~P~~tg~~l~~-~~---~~~L~~~pnivgiK~s~~------------------d~~~~~~~~~~~~~~~~v-~~G~-- 188 (288)
T cd00954 134 YHIPALTGVNLTL-EQ---FLELFEIPNVIGVKFTAT------------------DLYDLERIRAASPEDKLV-LNGF-- 188 (288)
T ss_pred EeCccccCCCCCH-HH---HHHHhcCCCEEEEEeCCC------------------CHHHHHHHHHhCCCCcEE-EEec--
Confidence 533221111 122 22 233333122322222211 1333444544443 4433 3443
Q ss_pred CHHHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhC
Q 017176 218 TVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256 (376)
Q Consensus 218 s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 256 (376)
+ ..+...+..|++|.+.|-+-+ -|..+.+.++....|
T Consensus 189 d-~~~~~~~~~G~~G~i~~~~n~-~P~~~~~l~~~~~~g 225 (288)
T cd00954 189 D-EMLLSALALGADGAIGSTYNV-NGKRYRKIFEAFNAG 225 (288)
T ss_pred h-HHHHHHHHcCCCEEEeChhhh-CHHHHHHHHHHHHcC
Confidence 1 234455668999998875543 477655444444344
|
It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. |
| >PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate | Back alignment and domain information |
|---|
Probab=93.74 E-value=1.3 Score=42.53 Aligned_cols=152 Identities=16% Similarity=0.305 Sum_probs=88.2
Q ss_pred CCCEEEEecC-CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017176 64 QHPIVLQIGG-SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 64 ~~p~~vQL~g-~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
..|+.++|=+ .+.+ ..+++.++||+-|.+-.+ --.++.+.+...++++-.+. .++.|-.-+-
T Consensus 73 ~vPValHLDH~~~~e----~i~~ai~~GftSVM~DgS------------~l~~eeNi~~T~~vv~~ah~-~gv~VEaElG 135 (287)
T PF01116_consen 73 SVPVALHLDHGKDFE----DIKRAIDAGFTSVMIDGS------------ALPFEENIAITREVVEYAHA-YGVSVEAELG 135 (287)
T ss_dssp TSEEEEEEEEE-SHH----HHHHHHHHTSSEEEEE-T------------TS-HHHHHHHHHHHHHHHHH-TT-EEEEEES
T ss_pred CCCEEeecccCCCHH----HHHHHHHhCcccccccCC------------cCCHHHHHHHHHHHHHhhhh-hCCEEEEEee
Confidence 3455555532 2322 223344447777666432 11133556667777776554 3444443332
Q ss_pred -CC-CCC-----------CccHHHHHHHHHHHhhcCCccEEEEccCccc--cCCCCCCCCCCCCcccHHHHHHHHhhCCC
Q 017176 143 -IG-VDD-----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL--LNGISPAENRTIPPLKYEYYYALLRDFPD 207 (376)
Q Consensus 143 -~g-~~~-----------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~--~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ 207 (376)
+| .++ ..+.++..+|+ ++.|+|.|.|.-++.. |++. ..|.++++.+.++.+..++
T Consensus 136 ~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv----~~TgvD~LAvaiGt~HG~y~~~------~~p~Ld~~~L~~I~~~~~~ 205 (287)
T PF01116_consen 136 HIGGKEDGIESEEETESLYTDPEEAKEFV----EETGVDALAVAIGTAHGMYKGG------KKPKLDFDRLKEIREAVPD 205 (287)
T ss_dssp BSSSSCTTCSSSTT-TTCSSSHHHHHHHH----HHHTTSEEEE-SSSBSSSBSSS------SSTC--HHHHHHHHHHHHT
T ss_pred eeeccCCCccccccccccccCHHHHHHHH----HHhCCCEEEEecCccccccCCC------CCcccCHHHHHHHHHhcCC
Confidence 11 111 12355555554 5789999999877752 2220 1355779999999876448
Q ss_pred CeEEEecCCCCHH-HHHHHHHcCcCeeEEchHHhhC
Q 017176 208 LTFTLNGGINTVD-EVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 208 ipVi~nGgI~s~~-da~~~l~~Gad~VmiGRa~l~~ 242 (376)
+|++.-||=-.++ ++.++++.|+.=|=+++.+..-
T Consensus 206 iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~~~a 241 (287)
T PF01116_consen 206 IPLVLHGGSGLPDEQIRKAIKNGISKINIGTELRRA 241 (287)
T ss_dssp SEEEESSCTTS-HHHHHHHHHTTEEEEEESHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHcCceEEEEehHHHHH
Confidence 9999999987775 7888889999999999987644
|
There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B .... |
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=93.62 E-value=1.7 Score=37.75 Aligned_cols=134 Identities=19% Similarity=0.202 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHH
Q 017176 77 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 156 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~ 156 (376)
+.+.+.++.+.+.|++.|.+-.--+.+... .. ..+ +.+..+++..+.|+.+.+...-.. ... .
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~--~~------~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~ 74 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEA--ET------DDK----EVLKEVAAETDLPLGVQLAINDAA-AAV----D 74 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccC--CC------ccc----cHHHHHHhhcCCcEEEEEccCCch-hhh----h
Confidence 566777788888899998875321111100 00 111 344555555678888876543111 111 1
Q ss_pred HHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017176 157 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 157 ~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
..++.+.++|+|+|.+|+..... +....+.+.++++.++++||+..-...+..+...+.+.|+|.+.+.
T Consensus 75 ~~a~~~~~~g~d~v~l~~~~~~~-----------~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~ 143 (200)
T cd04722 75 IAAAAARAAGADGVEIHGAVGYL-----------AREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLG 143 (200)
T ss_pred HHHHHHHHcCCCEEEEeccCCcH-----------HHHHHHHHHHHHHhcCCceEEEEECCCCccchhhHHHcCCCEEEEc
Confidence 11234567999999999754210 0111445666666555777766544333222212345899999987
Q ss_pred hH
Q 017176 237 RA 238 (376)
Q Consensus 237 Ra 238 (376)
..
T Consensus 144 ~~ 145 (200)
T cd04722 144 NG 145 (200)
T ss_pred CC
Confidence 65
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3 | Back alignment and domain information |
|---|
Probab=93.59 E-value=1.8 Score=42.68 Aligned_cols=123 Identities=9% Similarity=0.011 Sum_probs=80.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC--ccEEEEecCCCCCCccHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~--~pv~vKiR~g~~~~~~~~ 152 (376)
+++++.+-++...+.||..+-+..| .+++.-.+.++++|+.++ +.+.|-..-+|+ .+
T Consensus 138 ~~e~~~~~a~~~~~~Gf~~~Kikvg-----------------~~~~~d~~~v~~vRe~~G~~~~l~vDaN~~~~----~~ 196 (352)
T cd03328 138 DDDRLREQLSGWVAQGIPRVKMKIG-----------------RDPRRDPDRVAAARRAIGPDAELFVDANGAYS----RK 196 (352)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeecC-----------------CCHHHHHHHHHHHHHHcCCCCeEEEECCCCCC----HH
Confidence 5777777777777789999987432 134566778888888774 445444443443 33
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHH-cCc
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALR-KGA 230 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~-~Ga 230 (376)
+.+++ .+.+++.++.++. ..+++-+++.++++++.. .++||.+.=.+.+..++.++++ ..+
T Consensus 197 ~A~~~-~~~l~~~~~~~~E----------------eP~~~~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~a~ 259 (352)
T cd03328 197 QALAL-ARAFADEGVTWFE----------------EPVSSDDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAHAV 259 (352)
T ss_pred HHHHH-HHHHHHhCcchhh----------------CCCChhhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcCCC
Confidence 44444 3445666665543 112333466677777662 2799988778999999999999 458
Q ss_pred CeeEE
Q 017176 231 HHVMV 235 (376)
Q Consensus 231 d~Vmi 235 (376)
|.|++
T Consensus 260 div~~ 264 (352)
T cd03328 260 DVLQA 264 (352)
T ss_pred CEEec
Confidence 88765
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >PRK15452 putative protease; Provisional | Back alignment and domain information |
|---|
Probab=93.58 E-value=3.4 Score=42.03 Aligned_cols=128 Identities=14% Similarity=0.115 Sum_probs=77.1
Q ss_pred HHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHH
Q 017176 82 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKV 161 (376)
Q Consensus 82 aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~ 161 (376)
.++.+.++|+|.|=+........ .+...| ..+.+.+.++-.++ .++.+.+.+..-..+ .+++++.+.+..+
T Consensus 15 ~l~aAi~~GADaVY~G~~~~~~R-~~~~~f------~~edl~eav~~ah~-~g~kvyvt~n~i~~e-~el~~~~~~l~~l 85 (443)
T PRK15452 15 NMRYAFAYGADAVYAGQPRYSLR-VRNNEF------NHENLALGINEAHA-LGKKFYVVVNIAPHN-AKLKTFIRDLEPV 85 (443)
T ss_pred HHHHHHHCCCCEEEECCCccchh-hhccCC------CHHHHHHHHHHHHH-cCCEEEEEecCcCCH-HHHHHHHHHHHHH
Confidence 44556688999998854322211 111111 23456666665543 356666665542322 3455555555544
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEec--CCCCHHHHHHHHHcCcCeeEEchHH
Q 017176 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG--GINTVDEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nG--gI~s~~da~~~l~~Gad~VmiGRa~ 239 (376)
.+.|+|+|+|+. +..+.-+++..|++||+++- .|++...+.-..+.|++.|.+.|-+
T Consensus 86 -~~~gvDgvIV~d--------------------~G~l~~~ke~~p~l~ih~stqlni~N~~a~~f~~~lG~~rvvLSrEL 144 (443)
T PRK15452 86 -IAMKPDALIMSD--------------------PGLIMMVREHFPEMPIHLSVQANAVNWATVKFWQQMGLTRVILSREL 144 (443)
T ss_pred -HhCCCCEEEEcC--------------------HHHHHHHHHhCCCCeEEEEecccCCCHHHHHHHHHCCCcEEEECCcC
Confidence 468999999874 22233334445788888765 4677777777777899999888865
|
|
| >cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) | Back alignment and domain information |
|---|
Probab=93.58 E-value=1.2 Score=43.05 Aligned_cols=126 Identities=12% Similarity=0.004 Sum_probs=73.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 152 (376)
|.+.+.+-++.+.+.|.++|=+|.. +|+ ...-..+.-.++++.+.+.+ .+||.+-+.. .+++
T Consensus 27 D~~~l~~lv~~li~~Gv~Gi~v~Gs--------tGE---~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~-----~~t~ 90 (309)
T cd00952 27 DLDETARLVERLIAAGVDGILTMGT--------FGE---CATLTWEEKQAFVATVVETVAGRVPVFVGATT-----LNTR 90 (309)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc--------ccc---chhCCHHHHHHHHHHHHHHhCCCCCEEEEecc-----CCHH
Confidence 6788888999999999999988752 233 22334455556666655544 4788775432 2344
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE------ecCCCCHHHHHHHH
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAAL 226 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~------nGgI~s~~da~~~l 226 (376)
+.++. ++.+++.|+|++.+..-. +...+ ...-++++.++.+..+++||+. .|--.+++.+.++.
T Consensus 91 ~ai~~-a~~A~~~Gad~vlv~~P~--y~~~~-------~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~l~~L~ 160 (309)
T cd00952 91 DTIAR-TRALLDLGADGTMLGRPM--WLPLD-------VDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELA 160 (309)
T ss_pred HHHHH-HHHHHHhCCCEEEECCCc--CCCCC-------HHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHHHHHHHh
Confidence 55554 456678999999987521 11000 0111455566665543577652 23333555555554
|
HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.36 E-value=1.1 Score=41.04 Aligned_cols=68 Identities=12% Similarity=0.189 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCc
Q 017176 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGA 230 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Ga 230 (376)
.++..+. ++.+.+.|++.|.|.-++. -..+.++++++++++ -+|+.|-|.+.++++.+++.||
T Consensus 26 ~~~a~~i-~~al~~~Gi~~iEitl~~~---------------~~~~~I~~l~~~~p~-~~IGAGTVl~~~~a~~a~~aGA 88 (212)
T PRK05718 26 LEDAVPL-AKALVAGGLPVLEVTLRTP---------------AALEAIRLIAKEVPE-ALIGAGTVLNPEQLAQAIEAGA 88 (212)
T ss_pred HHHHHHH-HHHHHHcCCCEEEEecCCc---------------cHHHHHHHHHHHCCC-CEEEEeeccCHHHHHHHHHcCC
Confidence 4444443 3445579999999985442 116778888888876 5799999999999999999999
Q ss_pred CeeEE
Q 017176 231 HHVMV 235 (376)
Q Consensus 231 d~Vmi 235 (376)
++++.
T Consensus 89 ~Fivs 93 (212)
T PRK05718 89 QFIVS 93 (212)
T ss_pred CEEEC
Confidence 98875
|
|
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=93.30 E-value=1 Score=43.21 Aligned_cols=84 Identities=19% Similarity=0.270 Sum_probs=57.0
Q ss_pred ccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEec
Q 017176 135 VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 214 (376)
Q Consensus 135 ~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nG 214 (376)
.|+.+.+-... +.+...+.+ +.+++.|+++|.+|...... |. + ..|+.+.++++.. ++||+.-
T Consensus 116 ~~~~~ql~~~~-~~~~~~~~i----~~~~~~g~~~i~l~~~~p~~-~~-----~----~~~~~i~~l~~~~-~~pvivK- 178 (299)
T cd02809 116 GPRWFQLYVPR-DREITEDLL----RRAEAAGYKALVLTVDTPVL-GR-----R----LTWDDLAWLRSQW-KGPLILK- 178 (299)
T ss_pred CCeEEEEeecC-CHHHHHHHH----HHHHHcCCCEEEEecCCCCC-CC-----C----CCHHHHHHHHHhc-CCCEEEe-
Confidence 57777765432 222233332 23356899999999765421 11 1 2477888887765 7898876
Q ss_pred CCCCHHHHHHHHHcCcCeeEE
Q 017176 215 GINTVDEVNAALRKGAHHVMV 235 (376)
Q Consensus 215 gI~s~~da~~~l~~Gad~Vmi 235 (376)
++.+.+++..+.+.|+|+|.+
T Consensus 179 ~v~s~~~a~~a~~~G~d~I~v 199 (299)
T cd02809 179 GILTPEDALRAVDAGADGIVV 199 (299)
T ss_pred ecCCHHHHHHHHHCCCCEEEE
Confidence 479999999999999999987
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.62 Score=42.69 Aligned_cols=144 Identities=15% Similarity=0.121 Sum_probs=80.2
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017176 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 63 ~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
.+.++.+-|--.|+..+...+ +.++|+|.+.+|..++ .+.+.+.++++++. +.-+.|-+-
T Consensus 55 ~~~~v~~DLK~~Di~~~v~~~--~~~~Gad~vTvH~~a~-----------------~~~i~~~~~~~~~~-g~~~~V~ll 114 (216)
T PRK13306 55 PDKIIVADTKIADAGKILAKM--AFEAGADWVTVICAAH-----------------IPTIKAALKVAKEF-NGEIQIELY 114 (216)
T ss_pred CCCEEEEEEeecCCcHHHHHH--HHHCCCCEEEEeCCCC-----------------HHHHHHHHHHHHHc-CCEEEEEEC
Confidence 356788888777776555433 6688999999985321 23355556655532 333333333
Q ss_pred CCCCCCccHHHHHHHHHHHhhcCCccEEEEccCc-cccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHH
Q 017176 143 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK-ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE 221 (376)
Q Consensus 143 ~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~-~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~d 221 (376)
.+++ .+++ . ...+.|++.+.+|-.. +...|-. ..+...+.++++.+ .+..+...|||+ ++.
T Consensus 115 ts~~----~~~l----~-~~~~~~~~~~vl~~a~~~~~~G~v------~s~~~~~~ir~~~~--~~~~i~V~gGI~-~~~ 176 (216)
T PRK13306 115 GNWT----WEQA----Q-QWRDAGISQVIYHRSRDAQLAGVA------WGEKDLNKVKKLSD--MGFKVSVTGGLV-VED 176 (216)
T ss_pred CCCC----HHHH----H-HHHcCChhhhhhhhhhhhhhcCCC------CCHHHHHHHHHHhc--CCCeEEEcCCCC-Hhh
Confidence 3322 2222 1 1224666666666332 2222211 01111334445443 245588999995 454
Q ss_pred HHHHHHcCcCeeEEchHHhhCCc
Q 017176 222 VNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 222 a~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
+....+.|||.+.+||++...++
T Consensus 177 ~~~~~~~~ad~~VvGr~I~~a~d 199 (216)
T PRK13306 177 LKLFKGIPVKTFIAGRAIRGAAD 199 (216)
T ss_pred HHHHhcCCCCEEEECCcccCCCC
Confidence 44444479999999999876666
|
|
| >TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype | Back alignment and domain information |
|---|
Probab=93.29 E-value=3 Score=40.90 Aligned_cols=158 Identities=11% Similarity=0.151 Sum_probs=89.6
Q ss_pred CCEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC
Q 017176 65 HPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 143 (376)
Q Consensus 65 ~p~~vQL~g~-~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~ 143 (376)
.|+++.|=+. +.+ .++++.++||+-|.+-.+.=..+ .-...++.+.+...++++-... .++.|-.-+-.
T Consensus 74 VPValHLDHg~~~e----~i~~Ai~~GFtSVMiDgS~l~~~-----~~~~p~eENI~~Tkevve~Ah~-~GvsVEaELG~ 143 (347)
T TIGR01521 74 IPVVMHQDHGNSPA----TCQRAIQLGFTSVMMDGSLREDA-----KTPADYDYNVRVTAEVVAFAHA-VGASVEGELGC 143 (347)
T ss_pred CcEEEECCCCCCHH----HHHHHHHcCCCEEeecCcCCccc-----CCCCCHHHHHHHHHHHHHHHHH-cCCeEEEEeee
Confidence 5777777544 333 34445667888887764321000 0022345667777777776553 23333222211
Q ss_pred --CCC-------C-------------CccHHHHHHHHHHHhhcCCccEEEEccCccc--cCCCCCCCCCCCCcccHHHHH
Q 017176 144 --GVD-------D-------------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL--LNGISPAENRTIPPLKYEYYY 199 (376)
Q Consensus 144 --g~~-------~-------------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~--~~g~~~~~~~~~~~~~~~~v~ 199 (376)
|.+ + ..+.++..+|+ ++.|+|.+.|.-+|.. |.+... ..-+.++++.+.
T Consensus 144 igg~e~~~~g~~d~~~~~~~~~~~~~~T~PeeA~~Fv----~~TgvD~LAvaiGt~HG~Yk~~~~---p~~~~Ld~~rL~ 216 (347)
T TIGR01521 144 LGSLETGMGEAEDGHGFEGVLDHSQLLTDPEEAADFV----KKTKVDALAVAIGTSHGAYKFTRK---PTGEVLAIQRIE 216 (347)
T ss_pred cccccccccccccCcccccccchhhcCCCHHHHHHHH----HHHCcCEEehhcccccCCcCCCCC---CChhhcCHHHHH
Confidence 111 0 12345555554 4789999998877642 222100 001237799999
Q ss_pred HHHhhCCCCeEEEecCCCCH----------------------HHHHHHHHcCcCeeEEchHH
Q 017176 200 ALLRDFPDLTFTLNGGINTV----------------------DEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 200 ~~~~~~~~ipVi~nGgI~s~----------------------~da~~~l~~Gad~VmiGRa~ 239 (376)
++.+..+++|++.-|+=-.+ +++.++++.|+.=|=|++.+
T Consensus 217 eI~~~v~~vPLVLHGgSG~p~~~~~~~~~~~~~~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl 278 (347)
T TIGR01521 217 EIHARLPDTHLVMHGSSSVPQEWLDIINEYGGEIKETYGVPVEEIVEGIKYGVRKVNIDTDL 278 (347)
T ss_pred HHHccCCCCCEEEeCCCCCchHhhHHHHhhcccccccCCCCHHHHHHHHHCCCeeEEeChHH
Confidence 98877547999999988766 55666666666666666654
|
Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle. |
| >TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases | Back alignment and domain information |
|---|
Probab=93.22 E-value=3.3 Score=40.94 Aligned_cols=134 Identities=13% Similarity=0.129 Sum_probs=79.2
Q ss_pred CEEEEecCCCHH-HHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCC
Q 017176 66 PIVLQIGGSNLD-NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG 144 (376)
Q Consensus 66 p~~vQL~g~~~~-~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g 144 (376)
|+-..+...+++ .+.++.+..++.||..+-+..| . ++++.-.+.|+++|+.++- .+++++.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg-------------~---~~~~~d~~~v~~~re~~g~--~~~l~~D 193 (368)
T TIGR02534 132 DVTWTLASGDTDRDIAEAEERIEEKRHRSFKLKIG-------------A---RDPADDVAHVVAIAKALGD--RASVRVD 193 (368)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHhcCcceEEEEeC-------------C---CCcHHHHHHHHHHHHhcCC--CcEEEEE
Confidence 333334344444 3444444445679999977432 1 2345556778888887643 2344443
Q ss_pred CCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHH
Q 017176 145 VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNA 224 (376)
Q Consensus 145 ~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~ 224 (376)
....-+.++..+++ +.+++.++.+|. ..+++-+++.++++.+. ..+||.+.=.+.+..++.+
T Consensus 194 aN~~~~~~~A~~~~-~~l~~~~~~~iE----------------eP~~~~d~~~~~~l~~~-~~~pia~dE~~~~~~~~~~ 255 (368)
T TIGR02534 194 VNAAWDERTALHYL-PQLADAGVELIE----------------QPTPAENREALARLTRR-FNVPIMADESVTGPADALA 255 (368)
T ss_pred CCCCCCHHHHHHHH-HHHHhcChhheE----------------CCCCcccHHHHHHHHHh-CCCCEEeCcccCCHHHHHH
Confidence 22222344555543 445666766544 11222335666677665 4899999888999999999
Q ss_pred HHH-cCcCeeEE
Q 017176 225 ALR-KGAHHVMV 235 (376)
Q Consensus 225 ~l~-~Gad~Vmi 235 (376)
+++ .++|.|++
T Consensus 256 ~~~~~~~d~~~~ 267 (368)
T TIGR02534 256 IAKASAADVFAL 267 (368)
T ss_pred HHHhCCCCEEEE
Confidence 998 66898875
|
This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2). |
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=93.10 E-value=1.3 Score=38.94 Aligned_cols=133 Identities=17% Similarity=0.166 Sum_probs=77.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 154 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~ 154 (376)
+.+.+.+.++.+.+.|+++|.++. +.+..+.+.+.. ..+|+.+++..+... ...++.
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g---------------------~~i~~~~~~~~~-~~~~v~~~v~~~~~~-~~~~~~ 67 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP---------------------GYVRLAADALAG-SDVPVIVVVGFPTGL-TTTEVK 67 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH---------------------HHHHHHHHHhCC-CCCeEEEEecCCCCC-CcHHHH
Confidence 788899999999999999999873 223333333221 137888887654311 223444
Q ss_pred HHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEE-e--cCCCCHHHHHHH---H-
Q 017176 155 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTL-N--GGINTVDEVNAA---L- 226 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~-n--GgI~s~~da~~~---l- 226 (376)
++.+ +.+.+.|+|++.++.-.. ...+. + .....+.+.++++.. .++||+. | +...+.+...++ .
T Consensus 68 ~~~a-~~a~~~Gad~i~v~~~~~--~~~~~-~----~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~ 139 (201)
T cd00945 68 VAEV-EEAIDLGADEIDVVINIG--SLKEG-D----WEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAA 139 (201)
T ss_pred HHHH-HHHHHcCCCEEEEeccHH--HHhCC-C----HHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4443 344578999999874221 00000 0 011145666666653 3788774 2 222366666654 2
Q ss_pred HcCcCeeEEchH
Q 017176 227 RKGAHHVMVGRA 238 (376)
Q Consensus 227 ~~Gad~VmiGRa 238 (376)
+.|+|+|=...+
T Consensus 140 ~~g~~~iK~~~~ 151 (201)
T cd00945 140 EAGADFIKTSTG 151 (201)
T ss_pred HhCCCEEEeCCC
Confidence 379999876654
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >PRK13399 fructose-1,6-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.09 E-value=4.1 Score=40.02 Aligned_cols=141 Identities=13% Similarity=0.149 Sum_probs=79.5
Q ss_pred CCEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec-
Q 017176 65 HPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR- 142 (376)
Q Consensus 65 ~p~~vQL~g~-~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR- 142 (376)
.|+++.|=+. +.+ .++.+.++||+-|.+-.+. .+. +.-+..++.+.+...++++..+. .++.|-.-+-
T Consensus 76 VPVaLHLDHg~~~e----~i~~Ai~~GFtSVMiDgS~-l~~----~~~~~~~eeNI~~Trevve~Ah~-~GvsVEaELG~ 145 (347)
T PRK13399 76 IPICLHQDHGNSPA----TCQSAIRSGFTSVMMDGSL-LAD----GKTPASYDYNVDVTRRVTEMAHA-VGVSVEGELGC 145 (347)
T ss_pred CcEEEECCCCCCHH----HHHHHHhcCCCEEEEeCCC-CCC----CCCccCHHHHHHHHHHHHHHHHH-cCCeEEEEeee
Confidence 4667666443 322 2345556677777775432 111 11133456677788888877543 3555444331
Q ss_pred CC-CC-------C-------------CccHHHHHHHHHHHhhcCCccEEEEccCccc--cCCCCCCCCCCCCcccHHHHH
Q 017176 143 IG-VD-------D-------------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL--LNGISPAENRTIPPLKYEYYY 199 (376)
Q Consensus 143 ~g-~~-------~-------------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~--~~g~~~~~~~~~~~~~~~~v~ 199 (376)
+| .+ + ..+.++..+|+ ++.|+|.+.|.-+|.. |.+... ..-+.++++.++
T Consensus 146 igg~e~~~~g~ed~~~~~~~~~~~~~~T~PeeA~~Fv----~~TgvD~LAvaiGt~HG~Yk~~~~---p~~~~L~~drl~ 218 (347)
T PRK13399 146 LGSLETGEAGEEDGVGAEGKLSHDQMLTDPDQAVDFV----QRTGVDALAIAIGTSHGAYKFTRK---PDGDILAIDRIE 218 (347)
T ss_pred ccCcccccccccCCccccccccccccCCCHHHHHHHH----HHHCcCEEhhhhccccCCcCCCCC---CChhhccHHHHH
Confidence 11 01 1 12355555554 4689999998766642 222100 011236789999
Q ss_pred HHHhhCCCCeEEEecCCCCHHHH
Q 017176 200 ALLRDFPDLTFTLNGGINTVDEV 222 (376)
Q Consensus 200 ~~~~~~~~ipVi~nGgI~s~~da 222 (376)
++.+..+++|++.-|+=-.+++.
T Consensus 219 eI~~~v~~vPLVLHGgSGvp~~~ 241 (347)
T PRK13399 219 EIHARLPNTHLVMHGSSSVPQEL 241 (347)
T ss_pred HHHhhcCCCCEEEeCCCCCCHHH
Confidence 98887657999999988776443
|
|
| >TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase | Back alignment and domain information |
|---|
Probab=93.09 E-value=2.2 Score=41.47 Aligned_cols=124 Identities=13% Similarity=0.137 Sum_probs=77.4
Q ss_pred ecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCcc
Q 017176 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDS 150 (376)
Q Consensus 71 L~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~ 150 (376)
+...+++++.+.++...+.||..+-+..+ | +.-.+.++++|+.. | .+++++.....-+
T Consensus 128 ~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~-~------------------~~d~~~v~~vr~~~--~-~~~l~vDaN~~~~ 185 (324)
T TIGR01928 128 SGLANDEQMLKQIESLKATGYKRIKLKIT-P------------------QIMHQLVKLRRLRF--P-QIPLVIDANESYD 185 (324)
T ss_pred cCCCCHHHHHHHHHHHHHcCCcEEEEEeC-C------------------chhHHHHHHHHHhC--C-CCcEEEECCCCCC
Confidence 44456788888888777889999987542 0 11135677777765 3 3445543222112
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cC
Q 017176 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KG 229 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~G 229 (376)
.++ +.. .+.+++.++.+|. . .+++-+++.++++++.. ++||.+.=.+.+..++.++++ ..
T Consensus 186 ~~~-a~~-~~~l~~~~~~~iE----e------------P~~~~~~~~~~~l~~~~-~~pia~dEs~~~~~~~~~~~~~~~ 246 (324)
T TIGR01928 186 LQD-FPR-LKELDRYQLLYIE----E------------PFKIDDLSMLDELAKGT-ITPICLDESITSLDDARNLIELGN 246 (324)
T ss_pred HHH-HHH-HHHHhhCCCcEEE----C------------CCChhHHHHHHHHHhhc-CCCEeeCCCcCCHHHHHHHHHcCC
Confidence 233 233 3455667776665 1 12222356667776654 899999888999999999998 56
Q ss_pred cCeeEE
Q 017176 230 AHHVMV 235 (376)
Q Consensus 230 ad~Vmi 235 (376)
+|.+++
T Consensus 247 ~dvi~~ 252 (324)
T TIGR01928 247 VKVINI 252 (324)
T ss_pred CCEEEe
Confidence 888864
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase. |
| >cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids | Back alignment and domain information |
|---|
Probab=93.02 E-value=3.1 Score=40.81 Aligned_cols=119 Identities=11% Similarity=0.120 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHH
Q 017176 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLC 155 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~ 155 (376)
++++.+.++.+.+.||..+-+..+ ++.-.+.++++|+.++ .+++++..+..-+.++.
T Consensus 138 ~~~~~~~~~~~~~~Gf~~~KiKv~-------------------~~~d~~~l~~vr~~~g---~~~l~lDaN~~~~~~~a- 194 (354)
T cd03317 138 VEQLLKQIERYLEEGYKRIKLKIK-------------------PGWDVEPLKAVRERFP---DIPLMADANSAYTLADI- 194 (354)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecC-------------------hHHHHHHHHHHHHHCC---CCeEEEECCCCCCHHHH-
Confidence 377778888777889999987542 1123456777777653 45555533222223333
Q ss_pred HHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeE
Q 017176 156 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVM 234 (376)
Q Consensus 156 ~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~Vm 234 (376)
.. .+.+++.++.+|. . .+++.+++..+++.+.. .+||.+.=.+.+.+++.++++ ..+|.++
T Consensus 195 ~~-~~~l~~~~i~~iE----e------------P~~~~d~~~~~~l~~~~-~~pia~dEs~~~~~~~~~~~~~~~~d~~~ 256 (354)
T cd03317 195 PL-LKRLDEYGLLMIE----Q------------PLAADDLIDHAELQKLL-KTPICLDESIQSAEDARKAIELGACKIIN 256 (354)
T ss_pred HH-HHHhhcCCccEEE----C------------CCChhHHHHHHHHHhhc-CCCEEeCCccCCHHHHHHHHHcCCCCEEE
Confidence 33 3445667776655 1 12222355566666654 899988888999999999998 4578887
Q ss_pred E
Q 017176 235 V 235 (376)
Q Consensus 235 i 235 (376)
+
T Consensus 257 i 257 (354)
T cd03317 257 I 257 (354)
T ss_pred e
Confidence 6
|
NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd03322 rpsA The starvation sensing protein RpsA from E | Back alignment and domain information |
|---|
Probab=92.94 E-value=4.1 Score=40.26 Aligned_cols=119 Identities=12% Similarity=0.094 Sum_probs=78.0
Q ss_pred ecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC--ccEEEEecCCCCCC
Q 017176 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVDDH 148 (376)
Q Consensus 71 L~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~--~pv~vKiR~g~~~~ 148 (376)
+.+.+++.+.+.++...+.||..+-+.. .+.|+++|+.++ ..+.+-..-+|+
T Consensus 122 ~~~~~~~~~~~~a~~~~~~Gf~~~KiKv------------------------~~~v~avre~~G~~~~l~vDaN~~w~-- 175 (361)
T cd03322 122 ASGRDIPELLEAVERHLAQGYRAIRVQL------------------------PKLFEAVREKFGFEFHLLHDVHHRLT-- 175 (361)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEeeCH------------------------HHHHHHHHhccCCCceEEEECCCCCC--
Confidence 3455677777777767778999887622 567888888774 345444443443
Q ss_pred ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-
Q 017176 149 DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR- 227 (376)
Q Consensus 149 ~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~- 227 (376)
.++.+++ .+.+++.++.++. . .+++-+++.++++.+.. ++||.+.=.+.+++++..+++
T Consensus 176 --~~~A~~~-~~~l~~~~l~~iE----e------------P~~~~d~~~~~~L~~~~-~~pia~gE~~~~~~~~~~~i~~ 235 (361)
T cd03322 176 --PNQAARF-GKDVEPYRLFWME----D------------PTPAENQEAFRLIRQHT-ATPLAVGEVFNSIWDWQNLIQE 235 (361)
T ss_pred --HHHHHHH-HHHhhhcCCCEEE----C------------CCCcccHHHHHHHHhcC-CCCEEeccCCcCHHHHHHHHHh
Confidence 3344444 3445667777665 1 12223466777777654 799888777899999999998
Q ss_pred cCcCeeEE
Q 017176 228 KGAHHVMV 235 (376)
Q Consensus 228 ~Gad~Vmi 235 (376)
..+|.+++
T Consensus 236 ~a~di~~~ 243 (361)
T cd03322 236 RLIDYIRT 243 (361)
T ss_pred CCCCEEec
Confidence 45787765
|
coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad. |
| >cd00739 DHPS DHPS subgroup of Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.93 Score=42.68 Aligned_cols=60 Identities=22% Similarity=0.195 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEE
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSV 139 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~v 139 (376)
+.+...+-|+...+.|+|.||||+.+..+... +-+-....+.+..+|+.+++.++.|+++
T Consensus 22 ~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~-----~i~~~~E~~rl~~~v~~i~~~~~~plSI 81 (257)
T cd00739 22 SLDKAVAHAEKMIAEGADIIDIGGESTRPGAD-----PVSVEEELERVIPVLEALRGELDVLISV 81 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCC-----CCCHHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 45666777777778899999999644332111 2222345567778889998877888877
|
DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. |
| >PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=92.92 E-value=1.3 Score=42.32 Aligned_cols=62 Identities=13% Similarity=0.091 Sum_probs=44.5
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
++|+|.|-+...+. +.+++.++.. ...|+-++||| +.+.+.+..++|+|.+.+|.-...-
T Consensus 212 ~~gaDiI~LDn~s~------------------e~l~~av~~~~~~~~leaSGGI-~~~ni~~yA~tGVD~Is~Galthsa 272 (281)
T PRK06106 212 ELGVDAVLLDNMTP------------------DTLREAVAIVAGRAITEASGRI-TPETAPAIAASGVDLISVGWLTHSA 272 (281)
T ss_pred HcCCCEEEeCCCCH------------------HHHHHHHHHhCCCceEEEECCC-CHHHHHHHHhcCCCEEEeChhhcCC
Confidence 58999998775432 2233333222 25789999999 8899999999999999999865534
Q ss_pred Cc
Q 017176 243 PW 244 (376)
Q Consensus 243 P~ 244 (376)
|+
T Consensus 273 ~~ 274 (281)
T PRK06106 273 PV 274 (281)
T ss_pred Cc
Confidence 44
|
|
| >cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway | Back alignment and domain information |
|---|
Probab=92.91 E-value=3.9 Score=40.34 Aligned_cols=129 Identities=9% Similarity=0.034 Sum_probs=76.6
Q ss_pred ecCCCHHHHHHHHHHHHHCC-CCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCc
Q 017176 71 IGGSNLDNLAKATELANAYN-YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHD 149 (376)
Q Consensus 71 L~g~~~~~~~~aa~~~~~~G-~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~ 149 (376)
+...+++++.+.++...+.| |..+-+..|- .+++.-.+.|+++|+.++- .+++++.....-
T Consensus 138 ~~~~~~~~~~~~~~~~~~~G~f~~~KiKvg~----------------~~~~~d~~~v~avr~~~g~--~~~l~iDaN~~~ 199 (365)
T cd03318 138 LASGDTERDIAEAEEMLEAGRHRRFKLKMGA----------------RPPADDLAHVEAIAKALGD--RASVRVDVNQAW 199 (365)
T ss_pred EeCCCHHHHHHHHHHHHhCCCceEEEEEeCC----------------CChHHHHHHHHHHHHHcCC--CcEEEEECCCCC
Confidence 33345555555555555678 9999885431 1334445677888877642 233343222212
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-c
Q 017176 150 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-K 228 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~ 228 (376)
+.++.++++ +.+++.++.+|. ..+++-+++.++++.++ ..+||.+.=.+.+.+++.++++ .
T Consensus 200 ~~~~A~~~~-~~l~~~~~~~iE----------------eP~~~~~~~~~~~l~~~-~~~pia~dE~~~~~~~~~~~i~~~ 261 (365)
T cd03318 200 DESTAIRAL-PRLEAAGVELIE----------------QPVPRENLDGLARLRSR-NRVPIMADESVSGPADAFELARRG 261 (365)
T ss_pred CHHHHHHHH-HHHHhcCcceee----------------CCCCcccHHHHHHHHhh-cCCCEEcCcccCCHHHHHHHHHhC
Confidence 344544543 445667776554 11222236666777765 4899888777899999999998 4
Q ss_pred CcCeeEE
Q 017176 229 GAHHVMV 235 (376)
Q Consensus 229 Gad~Vmi 235 (376)
.+|.+++
T Consensus 262 ~~d~~~~ 268 (365)
T cd03318 262 AADVFSL 268 (365)
T ss_pred CCCeEEE
Confidence 5788855
|
This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. |
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=92.90 E-value=1.1 Score=40.81 Aligned_cols=81 Identities=12% Similarity=0.110 Sum_probs=56.9
Q ss_pred cEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecC
Q 017176 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 215 (376)
Q Consensus 136 pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGg 215 (376)
++..=+|. .+.++..+.+ +.+-+.|+..|.|.-++. ...+.+..++++++.--+||.|.
T Consensus 11 ~~~~v~r~-----~~~~~~~~~~-~a~~~gGi~~iEvt~~~~---------------~~~~~i~~l~~~~~~~~~iGaGT 69 (206)
T PRK09140 11 PLIAILRG-----ITPDEALAHV-GALIEAGFRAIEIPLNSP---------------DPFDSIAALVKALGDRALIGAGT 69 (206)
T ss_pred CEEEEEeC-----CCHHHHHHHH-HHHHHCCCCEEEEeCCCc---------------cHHHHHHHHHHHcCCCcEEeEEe
Confidence 44444664 2334444433 334479999999875542 11557788887775434799999
Q ss_pred CCCHHHHHHHHHcCcCeeEEch
Q 017176 216 INTVDEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 216 I~s~~da~~~l~~Gad~VmiGR 237 (376)
|.+.+++..+++.|||+++.+-
T Consensus 70 V~~~~~~~~a~~aGA~fivsp~ 91 (206)
T PRK09140 70 VLSPEQVDRLADAGGRLIVTPN 91 (206)
T ss_pred cCCHHHHHHHHHcCCCEEECCC
Confidence 9999999999999999999853
|
|
| >cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2 | Back alignment and domain information |
|---|
Probab=92.86 E-value=3.2 Score=40.65 Aligned_cols=131 Identities=15% Similarity=0.158 Sum_probs=83.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC--ccEEEEecCCCCCCcc
Q 017176 73 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVDDHDS 150 (376)
Q Consensus 73 g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~--~pv~vKiR~g~~~~~~ 150 (376)
..+++.+.+.++.+.+.||..+-+..|... . .+ . .+++.-.+.++++|+.++ +.+.+-.--+|+
T Consensus 118 ~~~~~~~~~~a~~~~~~Gf~~~Kikvg~~~-~---~~--~----~~~~~d~~~v~avr~~~g~~~~l~vDan~~~~---- 183 (341)
T cd03327 118 PTDLDELPDEAKEYLKEGYRGMKMRFGYGP-S---DG--H----AGLRKNVELVRAIREAVGYDVDLMLDCYMSWN---- 183 (341)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCCCC-C---cc--h----HHHHHHHHHHHHHHHHhCCCCcEEEECCCCCC----
Confidence 357888888888777889999998765310 0 00 0 235667788888888764 344443333343
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cC
Q 017176 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KG 229 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~G 229 (376)
.++.+++ .+.+++.++.+|. ..+++-+++..+++.+. .++||.+.=.+.+..++.++++ ..
T Consensus 184 ~~~A~~~-~~~l~~~~~~~iE----------------eP~~~~d~~~~~~l~~~-~~~pIa~gE~~~~~~~~~~~i~~~a 245 (341)
T cd03327 184 LNYAIKM-ARALEKYELRWIE----------------EPLIPDDIEGYAELKKA-TGIPISTGEHEYTVYGFKRLLEGRA 245 (341)
T ss_pred HHHHHHH-HHHhhhcCCcccc----------------CCCCccCHHHHHHHHhc-CCCCeEeccCccCHHHHHHHHHcCC
Confidence 3444443 3444566665543 11223346666677665 4899888777899999999998 56
Q ss_pred cCeeEE
Q 017176 230 AHHVMV 235 (376)
Q Consensus 230 ad~Vmi 235 (376)
+|.|++
T Consensus 246 ~d~i~~ 251 (341)
T cd03327 246 VDILQP 251 (341)
T ss_pred CCEEec
Confidence 888775
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=92.86 E-value=1.5 Score=40.36 Aligned_cols=67 Identities=16% Similarity=0.239 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHH----hhCCCCeEEEecCCCCHHHHHHHHH
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL----RDFPDLTFTLNGGINTVDEVNAALR 227 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~----~~~~~ipVi~nGgI~s~~da~~~l~ 227 (376)
++..+. ++.+.+.|+..|.|.-++.. ..+.+.+++ ++++++ ++|.|-|.|.++++++++
T Consensus 27 ~~a~~~-~~al~~gGi~~iEiT~~tp~---------------a~~~i~~l~~~~~~~~p~~-~vGaGTVl~~e~a~~a~~ 89 (222)
T PRK07114 27 EVAKKV-IKACYDGGARVFEFTNRGDF---------------AHEVFAELVKYAAKELPGM-ILGVGSIVDAATAALYIQ 89 (222)
T ss_pred HHHHHH-HHHHHHCCCCEEEEeCCCCc---------------HHHHHHHHHHHHHhhCCCe-EEeeEeCcCHHHHHHHHH
Confidence 344433 34455799999999877631 144555554 334443 799999999999999999
Q ss_pred cCcCeeEE
Q 017176 228 KGAHHVMV 235 (376)
Q Consensus 228 ~Gad~Vmi 235 (376)
.||++++-
T Consensus 90 aGA~FiVs 97 (222)
T PRK07114 90 LGANFIVT 97 (222)
T ss_pred cCCCEEEC
Confidence 99998774
|
|
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=92.82 E-value=1.5 Score=43.09 Aligned_cols=42 Identities=21% Similarity=0.361 Sum_probs=35.4
Q ss_pred ccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017176 193 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 193 ~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
..|+.+..+++.. ++|||.- +|.+.+|+..+.+.|||+|.+.
T Consensus 200 ~~~~~i~~l~~~~-~~PvivK-gv~~~~dA~~a~~~G~d~I~vs 241 (344)
T cd02922 200 LTWDDIKWLRKHT-KLPIVLK-GVQTVEDAVLAAEYGVDGIVLS 241 (344)
T ss_pred CCHHHHHHHHHhc-CCcEEEE-cCCCHHHHHHHHHcCCCEEEEE
Confidence 4588888887765 8998877 7789999999999999998874
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=92.78 E-value=3.3 Score=37.71 Aligned_cols=129 Identities=16% Similarity=0.085 Sum_probs=77.6
Q ss_pred EEEEecCC----CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017176 67 IVLQIGGS----NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 67 ~~vQL~g~----~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
+.+|..-. ++++..+.|+.+.++|..+++++ + .+.++++++.+++|+...++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~a~a~~~~G~~~~~~~--------------~----------~~~i~~i~~~~~~Pil~~~~ 64 (221)
T PRK01130 9 VSCQALPGEPLHSPEIMAAMALAAVQGGAVGIRAN--------------G----------VEDIKAIRAVVDVPIIGIIK 64 (221)
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHHHCCCeEEEcC--------------C----------HHHHHHHHHhCCCCEEEEEe
Confidence 45565532 45778888888889998888762 0 35677778778899864444
Q ss_pred CCC-C-CC---ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCC
Q 017176 143 IGV-D-DH---DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 217 (376)
Q Consensus 143 ~g~-~-~~---~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~ 217 (376)
-.+ + .. ...++ +. .+.++|+|+|.+-..... .+.. ....+.+..+.+. +++|++. ++.
T Consensus 65 ~d~~~~~~~~~~~~~~----v~-~a~~aGad~I~~d~~~~~----~p~~-----~~~~~~i~~~~~~-~~i~vi~--~v~ 127 (221)
T PRK01130 65 RDYPDSEVYITPTLKE----VD-ALAAAGADIIALDATLRP----RPDG-----ETLAELVKRIKEY-PGQLLMA--DCS 127 (221)
T ss_pred cCCCCCCceECCCHHH----HH-HHHHcCCCEEEEeCCCCC----CCCC-----CCHHHHHHHHHhC-CCCeEEE--eCC
Confidence 110 0 00 11222 22 234699998887543210 0000 0113444444443 4788774 678
Q ss_pred CHHHHHHHHHcCcCeeEEc
Q 017176 218 TVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 218 s~~da~~~l~~Gad~VmiG 236 (376)
+.+++..+.+.|+|.+.++
T Consensus 128 t~ee~~~a~~~G~d~i~~~ 146 (221)
T PRK01130 128 TLEEGLAAQKLGFDFIGTT 146 (221)
T ss_pred CHHHHHHHHHcCCCEEEcC
Confidence 9999988888999999774
|
|
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=92.62 E-value=12 Score=39.62 Aligned_cols=241 Identities=14% Similarity=0.118 Sum_probs=0.0
Q ss_pred EecCCCH---HHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCC
Q 017176 70 QIGGSNL---DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD 146 (376)
Q Consensus 70 QL~g~~~---~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~ 146 (376)
++.|... +-.....+.+.+.|.|.|-|- .-+|+.+.+...++.+++ .+..+.+-+.....
T Consensus 87 n~vg~~~ypddvv~~~v~~a~~~Gid~~rif----------------d~lnd~~~~~~ai~~ak~-~G~~~~~~i~yt~~ 149 (593)
T PRK14040 87 NLLGYRHYADDVVERFVERAVKNGMDVFRVF----------------DAMNDPRNLETALKAVRK-VGAHAQGTLSYTTS 149 (593)
T ss_pred ceeccccCcHHHHHHHHHHHHhcCCCEEEEe----------------eeCCcHHHHHHHHHHHHH-cCCeEEEEEEEeeC
Q ss_pred CCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHH
Q 017176 147 DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL 226 (376)
Q Consensus 147 ~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l 226 (376)
...+.+.+.+ +++.++++|+|.|.+---..... |....+.+..+++.+ ++||-.-+-=...-.....+
T Consensus 150 p~~~~~~~~~-~a~~l~~~Gad~i~i~Dt~G~l~----------P~~~~~lv~~lk~~~-~~pi~~H~Hnt~GlA~An~l 217 (593)
T PRK14040 150 PVHTLQTWVD-LAKQLEDMGVDSLCIKDMAGLLK----------PYAAYELVSRIKKRV-DVPLHLHCHATTGLSTATLL 217 (593)
T ss_pred CccCHHHHHH-HHHHHHHcCCCEEEECCCCCCcC----------HHHHHHHHHHHHHhc-CCeEEEEECCCCchHHHHHH
Q ss_pred H---cCcCeeE-----EchHHhhCCchhhHhhhhhhhCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 017176 227 R---KGAHHVM-----VGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLH 298 (376)
Q Consensus 227 ~---~Gad~Vm-----iGRa~l~~P~lf~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 298 (376)
+ .|||.|- +|.+. +||.+ +.+-..+.+......--.+.+....+|...+...|..-.+... --.---
T Consensus 218 aAieAGa~~vD~ai~glG~~~-Gn~~l--e~vv~~L~~~~~~~gidl~~l~~is~~~~~v~~~Y~~~~~~~~--~~~~~v 292 (593)
T PRK14040 218 KAIEAGIDGVDTAISSMSMTY-GHSAT--ETLVATLEGTERDTGLDILKLEEIAAYFREVRKKYAKFEGQLK--GVDSRI 292 (593)
T ss_pred HHHHcCCCEEEeccccccccc-cchhH--HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHHHHhccCCcccc--cCcccE
Q ss_pred hhcCCCCC--hHHHHHHHHHHhhhhhHHHHHHHHHHhCCCCCCCCCCcCC
Q 017176 299 FFHSEPGN--GLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEA 346 (376)
Q Consensus 299 y~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (376)
|.+.+||. +.+..++ +.+.-...+.+++++ +.......=|+|...|
T Consensus 293 ~~~e~PGG~~Snl~~ql-~~~g~~~~~~evl~e-~~~v~~~lG~~~~VTP 340 (593)
T PRK14040 293 LVAQVPGGMLTNMESQL-KEQGAADKLDEVLAE-IPRVREDLGFIPLVTP 340 (593)
T ss_pred EEEcCCCchHHHHHHHH-HHCCCHHHHHHHHHH-HHHHHHHcCCCCeECC
|
|
| >PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=92.61 E-value=1.4 Score=42.14 Aligned_cols=63 Identities=8% Similarity=0.007 Sum_probs=45.4
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
++|+|.|-+...+. +.+++.++.. .++.+.++||| +.+.+.+..++|+|.+.+|.-...-
T Consensus 215 ~agaDiImLDnmsp------------------e~l~~av~~~~~~~~leaSGGI-~~~ni~~yA~tGVD~Is~galthsa 275 (290)
T PRK06559 215 AAGADIIMLDNMSL------------------EQIEQAITLIAGRSRIECSGNI-DMTTISRFRGLAIDYVSSGSLTHSA 275 (290)
T ss_pred HcCCCEEEECCCCH------------------HHHHHHHHHhcCceEEEEECCC-CHHHHHHHHhcCCCEEEeCccccCC
Confidence 58999998776442 2233332221 26789999999 8999999999999999999865545
Q ss_pred Cch
Q 017176 243 PWY 245 (376)
Q Consensus 243 P~l 245 (376)
|++
T Consensus 276 ~~~ 278 (290)
T PRK06559 276 KSL 278 (290)
T ss_pred ccc
Confidence 554
|
|
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.6 Score=44.03 Aligned_cols=73 Identities=16% Similarity=0.124 Sum_probs=55.4
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++..+++|+++|.|..-....+| .++.+..+++. +++||+.--=|.++-++.++.+.|||+|.+.=.
T Consensus 76 A~~~~~~GA~aisvlte~~~f~g------------~~~~l~~v~~~-v~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~ 142 (260)
T PRK00278 76 AKAYEAGGAACLSVLTDERFFQG------------SLEYLRAARAA-VSLPVLRKDFIIDPYQIYEARAAGADAILLIVA 142 (260)
T ss_pred HHHHHhCCCeEEEEecccccCCC------------CHHHHHHHHHh-cCCCEEeeeecCCHHHHHHHHHcCCCEEEEEec
Confidence 45567899999988765433333 16777777765 599999988899999999999999999998777
Q ss_pred HhhCCc
Q 017176 239 AYQNPW 244 (376)
Q Consensus 239 ~l~~P~ 244 (376)
++.+..
T Consensus 143 ~l~~~~ 148 (260)
T PRK00278 143 ALDDEQ 148 (260)
T ss_pred cCCHHH
Confidence 664333
|
|
| >cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway | Back alignment and domain information |
|---|
Probab=92.51 E-value=3.9 Score=37.30 Aligned_cols=142 Identities=17% Similarity=0.171 Sum_probs=83.3
Q ss_pred CCCEEEEecCCC-HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEe
Q 017176 64 QHPIVLQIGGSN-LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKC 141 (376)
Q Consensus 64 ~~p~~vQL~g~~-~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKi 141 (376)
..++++-+--.| +.....+++.+.+.|+|.+.+|... | .+-+...++..++.- ++=+.+.+
T Consensus 49 ~~~i~~DlK~~DIg~tv~~~~~~~~~~gad~~Tvh~~~-----------G------~~~l~~~~~~~~~~~~~~~~v~~l 111 (216)
T cd04725 49 GFLVFLDLKLGDIPNTVAAAAEALLGLGADAVTVHPYG-----------G------SDMLKAALEAAEEKGKGLFAVTVL 111 (216)
T ss_pred CCcEEEEeecCchHHHHHHHHHHHHhcCCCEEEECCcC-----------C------HHHHHHHHHHHhccCCeEEEEEcC
Confidence 367777775444 4556666677778899999998421 2 234455555544321 22223333
Q ss_pred cCCCCCC-------ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEec
Q 017176 142 RIGVDDH-------DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 214 (376)
Q Consensus 142 R~g~~~~-------~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nG 214 (376)
+ +++.. ...++....+++..++.|++.+.+++... +.+.+. ..++.+ +...
T Consensus 112 s-s~~~~~~q~~~~~~~~~~~~~~~~~a~~~g~~G~V~~~~~~------------------~~i~~~--~~~~~~-~ltP 169 (216)
T cd04725 112 S-SPGALDLQEGIPGSLEDLVERLAKLAREAGVDGVVCGATEP------------------EALRRA--LGPDFL-ILTP 169 (216)
T ss_pred C-CCCHHHHHhhhcCCHHHHHHHHHHHHHHHCCCEEEECCcch------------------HHHHHh--hCCCCe-EEcC
Confidence 3 22221 02344454556677788988887766431 112111 123444 7778
Q ss_pred CCCCH---------HHHHHHHHcCcCeeEEchHHhhCCc
Q 017176 215 GINTV---------DEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 215 gI~s~---------~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
||.-. .+..+++..|++++.+||+++..+.
T Consensus 170 GI~~~~~~~dq~r~~~~~~a~~~g~~~ivvGR~I~~a~~ 208 (216)
T cd04725 170 GIGAQGSGDDQKRGGTPEDAIRAGADYIVVGRPITQAAD 208 (216)
T ss_pred CcCCCCCccccccccCHHHHHHcCCcEEEEChhhccCCC
Confidence 88632 2566777889999999999998766
|
In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP. |
| >cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases | Back alignment and domain information |
|---|
Probab=92.47 E-value=1.9 Score=39.37 Aligned_cols=132 Identities=12% Similarity=0.124 Sum_probs=78.2
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHC-CCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017176 64 QHPIVLQIGGSNLDNLAKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~-G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
+.++.+|+.+.+.+.+.+.|+.+.+. |--.|+| |.. .. | .+.++.+++. ++++.+-.
T Consensus 51 ~~~v~~qv~~~~~e~~i~~a~~l~~~~~~~~iKI----P~T-----~~-g----------l~ai~~L~~~-gi~v~~T~- 108 (211)
T cd00956 51 DGPVSAQVVSTDAEGMVAEARKLASLGGNVVVKI----PVT-----ED-G----------LKAIKKLSEE-GIKTNVTA- 108 (211)
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHHHhCCCEEEEE----cCc-----Hh-H----------HHHHHHHHHc-CCceeeEE-
Confidence 56899999999999999999988776 4333433 321 12 3 2334444332 44444321
Q ss_pred CCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHH---HHHhhCCCCe-EEEecCCCC
Q 017176 143 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY---ALLRDFPDLT-FTLNGGINT 218 (376)
Q Consensus 143 ~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~---~~~~~~~~ip-Vi~nGgI~s 218 (376)
.-+.++.. ++.++|+++|...-+.-...|..+ ...+. ++.+.. +++ =|...++++
T Consensus 109 -----V~s~~Qa~-----~Aa~AGA~yvsP~vgR~~~~g~dg----------~~~i~~i~~~~~~~-~~~tkil~As~r~ 167 (211)
T cd00956 109 -----IFSAAQAL-----LAAKAGATYVSPFVGRIDDLGGDG----------MELIREIRTIFDNY-GFDTKILAASIRN 167 (211)
T ss_pred -----ecCHHHHH-----HHHHcCCCEEEEecChHhhcCCCH----------HHHHHHHHHHHHHc-CCCceEEecccCC
Confidence 12233322 223689999877633211112111 33333 344443 333 467788999
Q ss_pred HHHHHHHHHcCcCeeEEchH
Q 017176 219 VDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 219 ~~da~~~l~~Gad~VmiGRa 238 (376)
++++.++...|||.|-+.=.
T Consensus 168 ~~ei~~a~~~Gad~vTv~~~ 187 (211)
T cd00956 168 PQHVIEAALAGADAITLPPD 187 (211)
T ss_pred HHHHHHHHHcCCCEEEeCHH
Confidence 99999999999999998543
|
FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase. |
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.43 E-value=1.3 Score=40.29 Aligned_cols=67 Identities=18% Similarity=0.233 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCc
Q 017176 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGA 230 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Ga 230 (376)
.++.... ++.+-+.|++.|.|.-|+.. ..+.++.+++++++ -+|+.|-|-|++++.++.+.||
T Consensus 24 ~e~a~~~-a~Ali~gGi~~IEITl~sp~---------------a~e~I~~l~~~~p~-~lIGAGTVL~~~q~~~a~~aGa 86 (211)
T COG0800 24 VEEALPL-AKALIEGGIPAIEITLRTPA---------------ALEAIRALAKEFPE-ALIGAGTVLNPEQARQAIAAGA 86 (211)
T ss_pred HHHHHHH-HHHHHHcCCCeEEEecCCCC---------------HHHHHHHHHHhCcc-cEEccccccCHHHHHHHHHcCC
Confidence 3444443 44455799999999877631 26788899888874 4899999999999999999999
Q ss_pred CeeE
Q 017176 231 HHVM 234 (376)
Q Consensus 231 d~Vm 234 (376)
+++.
T Consensus 87 ~fiV 90 (211)
T COG0800 87 QFIV 90 (211)
T ss_pred CEEE
Confidence 9764
|
|
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.33 Score=50.13 Aligned_cols=66 Identities=15% Similarity=0.099 Sum_probs=46.7
Q ss_pred HhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 161 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 161 ~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
.+.++|+|.|.|. .+ .|.+. ...+.++.+++.++.--.|+.|.|.|+++++.+++.|||+|.+|.|
T Consensus 249 ~Lv~aGvd~i~vd-~a---~g~~~--------~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g 314 (502)
T PRK07107 249 ALVEAGADVLCID-SS---EGYSE--------WQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGIG 314 (502)
T ss_pred HHHHhCCCeEeec-Cc---ccccH--------HHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECCC
Confidence 3456999999886 21 12110 1146677777777532357889999999999999999999988543
|
|
| >cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS) | Back alignment and domain information |
|---|
Probab=92.40 E-value=1.8 Score=42.02 Aligned_cols=91 Identities=12% Similarity=0.035 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHHhcc-cCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHH
Q 017176 118 DPKFVGEAMSVIAAN-TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE 196 (376)
Q Consensus 118 ~~~~~~eiv~~v~~~-~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~ 196 (376)
.++.+.+.++.+++. ++.|+.|-+-. +......++.++. +.+.++..+..+++.. ..
T Consensus 38 ~~e~l~~~i~~~~~l~tdkPfGVnl~~-~~~~~~~~~~l~v----i~e~~v~~V~~~~G~P-----------------~~ 95 (320)
T cd04743 38 RGEQVKALLEETAELLGDKPWGVGILG-FVDTELRAAQLAV----VRAIKPTFALIAGGRP-----------------DQ 95 (320)
T ss_pred CHHHHHHHHHHHHHhccCCCeEEEEec-cCCCcchHHHHHH----HHhcCCcEEEEcCCCh-----------------HH
Confidence 588999999999985 68999998743 3222223343332 2357899998886432 11
Q ss_pred HHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEE
Q 017176 197 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 235 (376)
Q Consensus 197 ~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vmi 235 (376)
+.++ ++. ++.|+ .-+.|...+.++.+.|||+|.+
T Consensus 96 -~~~l-k~~-Gi~v~--~~v~s~~~A~~a~~~GaD~vVa 129 (320)
T cd04743 96 -ARAL-EAI-GISTY--LHVPSPGLLKQFLENGARKFIF 129 (320)
T ss_pred -HHHH-HHC-CCEEE--EEeCCHHHHHHHHHcCCCEEEE
Confidence 2333 333 77777 6678999999999999998873
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >PRK06256 biotin synthase; Validated | Back alignment and domain information |
|---|
Probab=92.39 E-value=2.3 Score=41.48 Aligned_cols=147 Identities=16% Similarity=0.148 Sum_probs=75.6
Q ss_pred HHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHH
Q 017176 81 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 160 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~ 160 (376)
+.++.++++|++.+.+|.-. ++.+.++-+-+ ...+...+.++.+++ .++++.+-+-+|.. ++.++..+.+.
T Consensus 153 e~l~~LkeaG~~~v~~~lEt-s~~~~~~i~~~----~t~~~~i~~i~~a~~-~Gi~v~~~~I~Glg--Et~ed~~~~~~- 223 (336)
T PRK06256 153 EQAERLKEAGVDRYNHNLET-SRSYFPNVVTT----HTYEDRIDTCEMVKA-AGIEPCSGGIIGMG--ESLEDRVEHAF- 223 (336)
T ss_pred HHHHHHHHhCCCEEecCCcc-CHHHHhhcCCC----CCHHHHHHHHHHHHH-cCCeeccCeEEeCC--CCHHHHHHHHH-
Confidence 34567888899998887766 44322111101 245566666666655 36666555555553 34445444433
Q ss_pred HhhcCCccEEEEccCccccCCCCCCCCCCCCccc-HHHHHHHHhhCCCCeEEEecCC-CCHHHH-HHHHHcCcCeeEEch
Q 017176 161 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK-YEYYYALLRDFPDLTFTLNGGI-NTVDEV-NAALRKGAHHVMVGR 237 (376)
Q Consensus 161 ~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~-~~~v~~~~~~~~~ipVi~nGgI-~s~~da-~~~l~~Gad~VmiGR 237 (376)
.+.+.+++.+.++.-.+. .|..-.......+.. ...++-.+--.|+..|...||= ....+. ..++ .||+++|+|=
T Consensus 224 ~l~~l~~~~v~i~~l~P~-pGT~l~~~~~~~~~e~l~~ia~~Rl~~p~~~I~~~~gr~~~~~~~~~~~~-~g~~~~~~g~ 301 (336)
T PRK06256 224 FLKELDADSIPINFLNPI-PGTPLENHPELTPLECLKTIAIFRLINPDKEIRIAGGREVNLRSLQPLGL-GGANSVIVGN 301 (336)
T ss_pred HHHhCCCCEEeecccccC-CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCeeEecCchhhhchhhHHHHh-ccCceeeECC
Confidence 344688998888743321 121100111111111 1122222233577778666663 333333 3344 6999999985
Q ss_pred H
Q 017176 238 A 238 (376)
Q Consensus 238 a 238 (376)
=
T Consensus 302 ~ 302 (336)
T PRK06256 302 Y 302 (336)
T ss_pred c
Confidence 4
|
|
| >TIGR03569 NeuB_NnaB N-acetylneuraminate synthase | Back alignment and domain information |
|---|
Probab=92.15 E-value=7.7 Score=37.90 Aligned_cols=131 Identities=14% Similarity=0.165 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEe-----------cCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC
Q 017176 75 NLDNLAKATELANAYNYDEINL-----------NCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 143 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~Iei-----------N~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~ 143 (376)
..+.+....+.+++.|.+.+-- .+|+|.-|+ ||.-+++..++..+-+ +++||.+|.-.
T Consensus 74 ~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KI------aS~~~~n~pLL~~~A~-----~gkPvilStGm 142 (329)
T TIGR03569 74 SEEDHRELKEYCESKGIEFLSTPFDLESADFLEDLGVPRFKI------PSGEITNAPLLKKIAR-----FGKPVILSTGM 142 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCEEEE------CcccccCHHHHHHHHh-----cCCcEEEECCC
Confidence 3566777777777878666533 345665553 5555677777666543 48899998665
Q ss_pred CCCCCccHHHHHHHHHHHhhcCCcc---EEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHH
Q 017176 144 GVDDHDSYNQLCDFIYKVSSLSPTR---HFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVD 220 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~~Gvd---~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~ 220 (376)
. +++|+...+. .+.+.|.. .+.+|+-+. +..+ ...+++..+..+++.+ ++||..++--....
T Consensus 143 a-----tl~Ei~~Av~-~i~~~G~~~~~i~llhC~s~---YP~~-----~~~~nL~~I~~Lk~~f-~~pVG~SdHt~G~~ 207 (329)
T TIGR03569 143 A-----TLEEIEAAVG-VLRDAGTPDSNITLLHCTTE---YPAP-----FEDVNLNAMDTLKEAF-DLPVGYSDHTLGIE 207 (329)
T ss_pred C-----CHHHHHHHHH-HHHHcCCCcCcEEEEEECCC---CCCC-----cccCCHHHHHHHHHHh-CCCEEECCCCccHH
Confidence 2 3344433333 33467874 677787542 1111 1234577787777777 79999876555555
Q ss_pred HHHHHHHcCcC
Q 017176 221 EVNAALRKGAH 231 (376)
Q Consensus 221 da~~~l~~Gad 231 (376)
-...+...||+
T Consensus 208 ~~~aAvalGA~ 218 (329)
T TIGR03569 208 APIAAVALGAT 218 (329)
T ss_pred HHHHHHHcCCC
Confidence 55566667888
|
This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine. |
| >PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=92.02 E-value=1.8 Score=41.21 Aligned_cols=63 Identities=10% Similarity=0.079 Sum_probs=45.0
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
++|+|.|-+...+. +.+++.++.. ....+.++||| +.+.+.+..++|+|.+.+|.--..-
T Consensus 211 ~~gaDiImLDn~s~------------------e~l~~av~~~~~~~~leaSGgI-~~~ni~~yA~tGVD~Is~galths~ 271 (281)
T PRK06543 211 AAGVDTIMLDNFSL------------------DDLREGVELVDGRAIVEASGNV-NLNTVGAIASTGVDVISVGALTHSV 271 (281)
T ss_pred hcCCCEEEECCCCH------------------HHHHHHHHHhCCCeEEEEECCC-CHHHHHHHHhcCCCEEEeCccccCC
Confidence 58999998775432 2222322211 14578999999 8999999999999999999866555
Q ss_pred Cch
Q 017176 243 PWY 245 (376)
Q Consensus 243 P~l 245 (376)
||+
T Consensus 272 ~~~ 274 (281)
T PRK06543 272 RAL 274 (281)
T ss_pred ccc
Confidence 664
|
|
| >cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) | Back alignment and domain information |
|---|
Probab=92.01 E-value=4.2 Score=38.77 Aligned_cols=127 Identities=13% Similarity=0.098 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHHHC-CCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccH
Q 017176 75 NLDNLAKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSY 151 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~-G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~ 151 (376)
|.+.+.+-++.+.+. |+++|=++.. +|+ +.+| ..+.-.++++.+.+.+ .+||.+-+ .. .++
T Consensus 19 D~~~~~~~i~~l~~~~Gv~gi~~~Gs--------tGE-~~~L--t~~Er~~~~~~~~~~~~~~~~viagv----~~-~~~ 82 (288)
T cd00954 19 NEDVLRAIVDYLIEKQGVDGLYVNGS--------TGE-GFLL--SVEERKQIAEIVAEAAKGKVTLIAHV----GS-LNL 82 (288)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECcC--------CcC-cccC--CHHHHHHHHHHHHHHhCCCCeEEecc----CC-CCH
Confidence 678888899999888 9999988642 344 2222 2344444455444433 35777633 22 234
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE------ecCCCCHHHHHHH
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAA 225 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~------nGgI~s~~da~~~ 225 (376)
++.++. ++.+++.|+|++.+..-. +...+ ...-++++.++.+..+++||+. .|--.+++.+.++
T Consensus 83 ~~ai~~-a~~a~~~Gad~v~~~~P~--y~~~~-------~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L 152 (288)
T cd00954 83 KESQEL-AKHAEELGYDAISAITPF--YYKFS-------FEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLEL 152 (288)
T ss_pred HHHHHH-HHHHHHcCCCEEEEeCCC--CCCCC-------HHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHHHHH
Confidence 555553 456678999999876421 11110 0111556667776654788863 3545577777766
Q ss_pred HH
Q 017176 226 LR 227 (376)
Q Consensus 226 l~ 227 (376)
.+
T Consensus 153 ~~ 154 (288)
T cd00954 153 FE 154 (288)
T ss_pred hc
Confidence 64
|
It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. |
| >PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=92.01 E-value=1.8 Score=41.52 Aligned_cols=63 Identities=13% Similarity=0.195 Sum_probs=46.9
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
++|+|.|-+...+. +.+++.++.. .++.+-++||| |.+.+.+..++|+|.+.+|.-...-
T Consensus 223 ~aGaDiImLDnmsp------------------e~l~~av~~~~~~~~lEaSGGI-t~~ni~~yA~tGVD~IS~galthsa 283 (294)
T PRK06978 223 AHGAQSVLLDNFTL------------------DMMREAVRVTAGRAVLEVSGGV-NFDTVRAFAETGVDRISIGALTKDV 283 (294)
T ss_pred HcCCCEEEECCCCH------------------HHHHHHHHhhcCCeEEEEECCC-CHHHHHHHHhcCCCEEEeCccccCC
Confidence 59999998876542 2233333222 26789999999 7999999989999999999877666
Q ss_pred Cch
Q 017176 243 PWY 245 (376)
Q Consensus 243 P~l 245 (376)
||+
T Consensus 284 ~~l 286 (294)
T PRK06978 284 RAT 286 (294)
T ss_pred ccc
Confidence 775
|
|
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=92.01 E-value=0.43 Score=44.82 Aligned_cols=73 Identities=16% Similarity=0.110 Sum_probs=50.7
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.++++|+++|.|-.-....+| .++.+..+++.+ ++||...-=|.++-++.++...|||+|.+=-+
T Consensus 74 a~~y~~~GA~aiSVlTe~~~F~G------------s~~dL~~v~~~~-~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~ 140 (254)
T PF00218_consen 74 AKAYEEAGAAAISVLTEPKFFGG------------SLEDLRAVRKAV-DLPVLRKDFIIDPYQIYEARAAGADAVLLIAA 140 (254)
T ss_dssp HHHHHHTT-SEEEEE--SCCCHH------------HHHHHHHHHHHS-SS-EEEES---SHHHHHHHHHTT-SEEEEEGG
T ss_pred HHHHHhcCCCEEEEECCCCCCCC------------CHHHHHHHHHHh-CCCcccccCCCCHHHHHHHHHcCCCEeehhHH
Confidence 45667899999999865544333 277788887765 89999999999999999999999999988666
Q ss_pred HhhCCc
Q 017176 239 AYQNPW 244 (376)
Q Consensus 239 ~l~~P~ 244 (376)
+|.+-.
T Consensus 141 ~L~~~~ 146 (254)
T PF00218_consen 141 ILSDDQ 146 (254)
T ss_dssp GSGHHH
T ss_pred hCCHHH
Confidence 665543
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >PRK09016 quinolinate phosphoribosyltransferase; Validated | Back alignment and domain information |
|---|
Probab=92.00 E-value=1.6 Score=41.97 Aligned_cols=63 Identities=10% Similarity=0.151 Sum_probs=45.5
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
++|+|.|-+...+. +.++++++.. .++.+.++||| +.+.+.+.-++|+|.+.+|.-.-.-
T Consensus 226 ~~gaDiI~LDn~s~------------------e~~~~av~~~~~~~~ieaSGGI-~~~ni~~yA~tGVD~Is~galthsa 286 (296)
T PRK09016 226 KAGADIIMLDNFTT------------------EQMREAVKRTNGRALLEVSGNV-TLETLREFAETGVDFISVGALTKHV 286 (296)
T ss_pred HcCCCEEEeCCCCh------------------HHHHHHHHhhcCCeEEEEECCC-CHHHHHHHHhcCCCEEEeCccccCC
Confidence 58999988765432 2233333221 26889999999 8899999989999999999865555
Q ss_pred Cch
Q 017176 243 PWY 245 (376)
Q Consensus 243 P~l 245 (376)
||+
T Consensus 287 ~~l 289 (296)
T PRK09016 287 QAL 289 (296)
T ss_pred Ccc
Confidence 664
|
|
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=91.97 E-value=1.7 Score=42.43 Aligned_cols=117 Identities=11% Similarity=0.045 Sum_probs=65.6
Q ss_pred ccccCCHHHHHHHHHHHhc-ccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCC
Q 017176 113 VSLMLDPKFVGEAMSVIAA-NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191 (376)
Q Consensus 113 ~~l~~~~~~~~eiv~~v~~-~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~ 191 (376)
+..+.+++...+. +.+|+ ..+.|+.+-+-..-......++..+ ..+..++|++.+|-....... .+...+..
T Consensus 92 ~~~~~~~~~~~~~-~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~----~i~~i~adal~i~ln~~q~~~-~p~g~~~f- 164 (333)
T TIGR02151 92 RAALKDPETADTF-EVVREEAPNGPLIANIGAPQLVEGGPEEAQE----AIDMIEADALAIHLNVLQELV-QPEGDRNF- 164 (333)
T ss_pred hhhccChhhHhHH-HHHHHhCCCCcEEeecCchhhccccHHHHHH----HHHHhcCCCEEEcCccccccc-CCCCCcCH-
Confidence 3344578766555 77777 5688988754321110011223322 233456788888853211000 00000010
Q ss_pred cccHHHHHHHHhhCCCCeEEE--ecCCCCHHHHHHHHHcCcCeeEEch
Q 017176 192 PLKYEYYYALLRDFPDLTFTL--NGGINTVDEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 192 ~~~~~~v~~~~~~~~~ipVi~--nGgI~s~~da~~~l~~Gad~VmiGR 237 (376)
....+.+..+++.. ++||+. +|.-.+.+++..+.+.|+|+|-++-
T Consensus 165 ~~~le~i~~i~~~~-~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg 211 (333)
T TIGR02151 165 KGWLEKIAEICSQL-SVPVIVKEVGFGISKEVAKLLADAGVSAIDVAG 211 (333)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence 00125677777765 899986 5666789999888889999998863
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.97 E-value=3.5 Score=38.54 Aligned_cols=153 Identities=11% Similarity=0.110 Sum_probs=79.8
Q ss_pred HHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCC-----CccHHHHHH
Q 017176 82 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD-----HDSYNQLCD 156 (376)
Q Consensus 82 aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~-----~~~~~~~~~ 156 (376)
.+..+++.|.+++-||=+ -|+..|+ ..-+++..-+++..+.==.||.+ .|-.. ..+.+-+.+
T Consensus 80 S~~mL~d~G~~~viiGHS------ERR~~~~----E~d~~i~~K~~aa~~~Gl~pIlC---vGEtl~~reag~t~~v~~~ 146 (251)
T COG0149 80 SAEMLKDLGAKYVLIGHS------ERRLYFG----ETDELIAKKVKAAKEAGLTPILC---VGETLEEREAGKTLEVLKR 146 (251)
T ss_pred CHHHHHHcCCCEEEECcc------ccccccc----cchHHHHHHHHHHHHCCCeEEEE---cCCCHHHHhccChHHHHHH
Confidence 456788999999999731 1222233 33345556666655542245544 22111 112222333
Q ss_pred HHHHHhhcCCc---cEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC----CCCeEEEecCCCCHHHHHHHHHcC
Q 017176 157 FIYKVSSLSPT---RHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF----PDLTFTLNGGINTVDEVNAALRKG 229 (376)
Q Consensus 157 ~i~~~~e~~Gv---d~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~----~~ipVi~nGgI~s~~da~~~l~~G 229 (376)
.+...+...+. ..|..-+--..=.|.+.. ...+...-..++...... .++||+.-|+|....+.+.+.+.+
T Consensus 147 Ql~~~l~~l~~~~~~vIAYEPvWAIGTG~~at--~~~a~~v~~~Ir~~~~~~~~~~~~v~IlYGGSV~~~N~~e~~~~~~ 224 (251)
T COG0149 147 QLAAALAALSPEANIVIAYEPVWAIGTGKSAS--PADAEEVHAFIRAVLAELFGAEEKVRILYGGSVKPGNAAELAAQPD 224 (251)
T ss_pred HHHHHHhhcCcccCeEEEECCHHHhcCCCCCC--HHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCcChhHHHHHhcCCC
Confidence 34444444443 333333211110121110 000000112333433332 489999999998888888777799
Q ss_pred cCeeEEchHHhhCCchhhHhh
Q 017176 230 AHHVMVGRAAYQNPWYTLGHV 250 (376)
Q Consensus 230 ad~VmiGRa~l~~P~lf~~~~ 250 (376)
+||+.||++.|.-.. |...+
T Consensus 225 idG~LVGgAslka~~-f~~ii 244 (251)
T COG0149 225 IDGALVGGASLKADD-FLAIL 244 (251)
T ss_pred CCeEEEcceeecchh-HHHHH
Confidence 999999999997666 34433
|
|
| >PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=91.94 E-value=7.1 Score=39.20 Aligned_cols=142 Identities=11% Similarity=0.156 Sum_probs=85.7
Q ss_pred cCCCHHHHHHHHHHHHHCCCCEEEecCCCCCcc---ccCCC---Ccccc----------c--cCCHHHHHHHHHHHhccc
Q 017176 72 GGSNLDNLAKATELANAYNYDEINLNCGCPSPK---VAGHG---CFGVS----------L--MLDPKFVGEAMSVIAANT 133 (376)
Q Consensus 72 ~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~---v~r~g---~yG~~----------l--~~~~~~~~eiv~~v~~~~ 133 (376)
.+.+++++.+-++.+.+.||..+-+..|-|... ....+ .++-. + ....+...+.|++||+.+
T Consensus 124 ~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~~ 203 (404)
T PRK15072 124 NGRDIDELLDDVARHLELGYKAIRVQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNKF 203 (404)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCCCcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhhh
Confidence 455777776667667778999999987743210 00000 00000 0 012245568899999887
Q ss_pred C--ccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEE
Q 017176 134 N--VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 211 (376)
Q Consensus 134 ~--~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi 211 (376)
+ +.+.+-.--+|+ .++..++ .+.+++.++.+|. . .+++-+++..+++++. .++||.
T Consensus 204 G~~~~l~vDaN~~w~----~~~A~~~-~~~l~~~~l~~iE----e------------P~~~~d~~~~~~L~~~-~~iPIa 261 (404)
T PRK15072 204 GFDLHLLHDVHHRLT----PIEAARL-GKSLEPYRLFWLE----D------------PTPAENQEAFRLIRQH-TTTPLA 261 (404)
T ss_pred CCCceEEEECCCCCC----HHHHHHH-HHhccccCCcEEE----C------------CCCccCHHHHHHHHhc-CCCCEE
Confidence 4 344444333343 4455554 3445667777665 1 1122235666777665 489998
Q ss_pred EecCCCCHHHHHHHHH-cCcCeeEE
Q 017176 212 LNGGINTVDEVNAALR-KGAHHVMV 235 (376)
Q Consensus 212 ~nGgI~s~~da~~~l~-~Gad~Vmi 235 (376)
+.=.+.+..++.++++ ..+|.|++
T Consensus 262 ~dEs~~~~~~~~~li~~~a~dii~~ 286 (404)
T PRK15072 262 VGEVFNSIWDCKQLIEEQLIDYIRT 286 (404)
T ss_pred eCcCccCHHHHHHHHHcCCCCEEec
Confidence 8778899999999999 45788876
|
|
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=91.89 E-value=2.3 Score=41.42 Aligned_cols=114 Identities=12% Similarity=0.085 Sum_probs=64.7
Q ss_pred ccCCHHHHHHHHHHHhcccC-ccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcc
Q 017176 115 LMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPL 193 (376)
Q Consensus 115 l~~~~~~~~eiv~~v~~~~~-~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~ 193 (376)
.+.+++.. +-++.+|+... .|+.+-+-..-....+.++..+ ..+..++|++.+|-........ +...+. ...
T Consensus 93 ~~~~~e~~-~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~----~i~~~~adalel~l~~~q~~~~-~~~~~d-f~~ 165 (326)
T cd02811 93 ALEDPELA-ESFTVVREAPPNGPLIANLGAVQLNGYGVEEARR----AVEMIEADALAIHLNPLQEAVQ-PEGDRD-FRG 165 (326)
T ss_pred hccChhhh-hHHHHHHHhCCCceEEeecCccccCCCCHHHHHH----HHHhcCCCcEEEeCcchHhhcC-CCCCcC-HHH
Confidence 34567755 66777777664 7877744331110113334333 3345678899998532100000 000000 000
Q ss_pred cHHHHHHHHhhCCCCeEEE--ecCCCCHHHHHHHHHcCcCeeEEc
Q 017176 194 KYEYYYALLRDFPDLTFTL--NGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 194 ~~~~v~~~~~~~~~ipVi~--nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
..+.+..+++.+ ++||+. +|.-.+.+++..+.+.|+|+|-++
T Consensus 166 ~~~~i~~l~~~~-~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vs 209 (326)
T cd02811 166 WLERIEELVKAL-SVPVIVKEVGFGISRETAKRLADAGVKAIDVA 209 (326)
T ss_pred HHHHHHHHHHhc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 124566777654 899987 566688999988888999999984
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=91.87 E-value=3.5 Score=39.07 Aligned_cols=126 Identities=15% Similarity=0.134 Sum_probs=76.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 152 (376)
|.+.+.+-++.+.+.|.++|=++.. +|+ + ..-..+.-.++++.+++.+ .+||.+-+. . .+.+
T Consensus 19 D~~~~~~~i~~l~~~Gv~gl~v~Gs--------tGE-~--~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~----~-~~~~ 82 (284)
T cd00950 19 DFDALERLIEFQIENGTDGLVVCGT--------TGE-S--PTLSDEEHEAVIEAVVEAVNGRVPVIAGTG----S-NNTA 82 (284)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCC--------Ccc-h--hhCCHHHHHHHHHHHHHHhCCCCcEEeccC----C-ccHH
Confidence 6788889999999999999988742 222 2 2233444455555555544 357666333 2 2345
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE------ecCCCCHHHHHHHH
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAAL 226 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~------nGgI~s~~da~~~l 226 (376)
+.++. ++.+++.|+|++.+..-. +...+ ...-++++.++.+. .++||+. .|-..+++.+.++.
T Consensus 83 ~~~~~-a~~a~~~G~d~v~~~~P~--~~~~~-------~~~l~~~~~~ia~~-~~~pi~lYn~P~~~g~~ls~~~~~~L~ 151 (284)
T cd00950 83 EAIEL-TKRAEKAGADAALVVTPY--YNKPS-------QEGLYAHFKAIAEA-TDLPVILYNVPGRTGVNIEPETVLRLA 151 (284)
T ss_pred HHHHH-HHHHHHcCCCEEEEcccc--cCCCC-------HHHHHHHHHHHHhc-CCCCEEEEEChhHhCCCCCHHHHHHHh
Confidence 55554 455678999999887432 11100 01124566777765 4788863 36567788777776
Q ss_pred H
Q 017176 227 R 227 (376)
Q Consensus 227 ~ 227 (376)
+
T Consensus 152 ~ 152 (284)
T cd00950 152 E 152 (284)
T ss_pred c
Confidence 5
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >TIGR00683 nanA N-acetylneuraminate lyase | Back alignment and domain information |
|---|
Probab=91.86 E-value=4.5 Score=38.68 Aligned_cols=127 Identities=10% Similarity=0.087 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHHHHCC-CCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccH
Q 017176 75 NLDNLAKATELANAYN-YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSY 151 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G-~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~ 151 (376)
|.+.+.+-.+.+.+.| +|+|=++.. +|+ +.+| ..+.-.++++.+++.+ .+||.+-+. . .++
T Consensus 19 D~~~~~~~i~~~i~~G~v~gi~~~Gs--------tGE-~~~L--t~eEr~~~~~~~~~~~~~~~pvi~gv~----~-~~t 82 (290)
T TIGR00683 19 NEKGLRQIIRHNIDKMKVDGLYVGGS--------TGE-NFML--STEEKKEIFRIAKDEAKDQIALIAQVG----S-VNL 82 (290)
T ss_pred CHHHHHHHHHHHHhCCCcCEEEECCc--------ccc-cccC--CHHHHHHHHHHHHHHhCCCCcEEEecC----C-CCH
Confidence 6788888889889999 999988642 333 3222 4445555565555544 367776433 2 234
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEE-E-----ecCCCCHHHHHHH
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT-L-----NGGINTVDEVNAA 225 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi-~-----nGgI~s~~da~~~ 225 (376)
++.++. ++.+++.|+|++.+..-. +...+ ...-++++.++.++.+++||+ . .|--.+++.+.++
T Consensus 83 ~~~i~l-a~~a~~~Gad~v~v~~P~--y~~~~-------~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i~~L 152 (290)
T TIGR00683 83 KEAVEL-GKYATELGYDCLSAVTPF--YYKFS-------FPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQFGEL 152 (290)
T ss_pred HHHHHH-HHHHHHhCCCEEEEeCCc--CCCCC-------HHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHHHHHH
Confidence 455553 455678999999985421 11100 011144555665544457765 2 2555566666655
Q ss_pred HH
Q 017176 226 LR 227 (376)
Q Consensus 226 l~ 227 (376)
.+
T Consensus 153 ~~ 154 (290)
T TIGR00683 153 YK 154 (290)
T ss_pred hc
Confidence 54
|
N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate. |
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=91.83 E-value=5.5 Score=35.69 Aligned_cols=126 Identities=13% Similarity=0.076 Sum_probs=70.8
Q ss_pred EEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccE--EEEecCCC
Q 017176 69 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPV--SVKCRIGV 145 (376)
Q Consensus 69 vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv--~vKiR~g~ 145 (376)
+-|=..++++..+.++.+ +.|++.||+. .|.. . .+| .++++.+++.. +..+ .+|+.
T Consensus 4 ~alD~~~~~~a~~~~~~l-~~~v~~iev~--~~l~--~---~~g----------~~~i~~l~~~~~~~~i~~d~k~~--- 62 (206)
T TIGR03128 4 LALDLLDIEEALELAEKV-ADYVDIIEIG--TPLI--K---NEG----------IEAVKEMKEAFPDRKVLADLKTM--- 62 (206)
T ss_pred EEecCCCHHHHHHHHHHc-ccCeeEEEeC--CHHH--H---HhC----------HHHHHHHHHHCCCCEEEEEEeec---
Confidence 334456788888888888 6789999994 2221 1 123 34555665542 3333 34433
Q ss_pred CCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEe-cCCCC-HHHHH
Q 017176 146 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN-GGINT-VDEVN 223 (376)
Q Consensus 146 ~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~n-GgI~s-~~da~ 223 (376)
+..++ + + . .+.++|+|+|++|+-... .....+.+.+++. +++++.. =+..+ .+++.
T Consensus 63 -d~~~~-~-~---~-~~~~~Gad~i~vh~~~~~--------------~~~~~~i~~~~~~-g~~~~~~~~~~~t~~~~~~ 120 (206)
T TIGR03128 63 -DAGEY-E-A---E-QAFAAGADIVTVLGVADD--------------ATIKGAVKAAKKH-GKEVQVDLINVKDKVKRAK 120 (206)
T ss_pred -cchHH-H-H---H-HHHHcCCCEEEEeccCCH--------------HHHHHHHHHHHHc-CCEEEEEecCCCChHHHHH
Confidence 21211 1 1 1 233699999999975310 0112222333444 7888764 24444 47777
Q ss_pred HHHHcCcCeeEEch
Q 017176 224 AALRKGAHHVMVGR 237 (376)
Q Consensus 224 ~~l~~Gad~VmiGR 237 (376)
.+.+.|+|.|.+..
T Consensus 121 ~~~~~g~d~v~~~p 134 (206)
T TIGR03128 121 ELKELGADYIGVHT 134 (206)
T ss_pred HHHHcCCCEEEEcC
Confidence 78778999998844
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway | Back alignment and domain information |
|---|
Probab=91.82 E-value=5.5 Score=37.36 Aligned_cols=129 Identities=10% Similarity=0.139 Sum_probs=76.3
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCc--cEEEEecC
Q 017176 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV--PVSVKCRI 143 (376)
Q Consensus 66 p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~--pv~vKiR~ 143 (376)
|+..-+.+.++ +..+.++...+.||..+-+..| . .+++.-.+.++++++.++- .+.+-.--
T Consensus 74 ~~~~~~~~~~~-~~~~~~~~~~~~Gf~~~KiKvg-------------~---~~~~~d~~~v~~vr~~~g~~~~l~vDaN~ 136 (263)
T cd03320 74 PVNALLPAGDA-AALGEAKAAYGGGYRTVKLKVG-------------A---TSFEEDLARLRALREALPADAKLRLDANG 136 (263)
T ss_pred ceeEEecCCCH-HHHHHHHHHHhCCCCEEEEEEC-------------C---CChHHHHHHHHHHHHHcCCCCeEEEeCCC
Confidence 44444555556 4445566666779999987543 0 2334556777888877642 33332222
Q ss_pred CCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHH
Q 017176 144 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 223 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~ 223 (376)
+|+ .++.++++ +.+++.++.+|. . .+++-+++.+.++. .++||.+.=.+.+..++.
T Consensus 137 ~w~----~~~A~~~~-~~l~~~~i~~iE----q------------P~~~~d~~~~~~l~---~~~PIa~dEs~~~~~~~~ 192 (263)
T cd03320 137 GWS----LEEALAFL-EALAAGRIEYIE----Q------------PLPPDDLAELRRLA---AGVPIALDESLRRLDDPL 192 (263)
T ss_pred CCC----HHHHHHHH-HhhcccCCceEE----C------------CCChHHHHHHHHhh---cCCCeeeCCccccccCHH
Confidence 332 34444443 344566776655 0 11222344444544 379999988899999999
Q ss_pred HHHH-cCcCeeEE
Q 017176 224 AALR-KGAHHVMV 235 (376)
Q Consensus 224 ~~l~-~Gad~Vmi 235 (376)
++++ ..+|.|++
T Consensus 193 ~~~~~~~~d~v~~ 205 (263)
T cd03320 193 ALAAAGALGALVL 205 (263)
T ss_pred HHHhcCCCCEEEE
Confidence 9998 46888877
|
Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=91.81 E-value=8.1 Score=35.46 Aligned_cols=136 Identities=13% Similarity=0.112 Sum_probs=74.2
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCC
Q 017176 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV 145 (376)
Q Consensus 66 p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~ 145 (376)
.+...+...+...+.+..+.+.+.|++.|-+..- .+.|- .+..+--++++++++.++.++.+-+-+
T Consensus 9 ~i~~s~~~~~~~~l~~~l~~~~~~g~~~ihld~~--------d~~f~----~~~~~g~~~~~~l~~~~~~~~~vhlmv-- 74 (229)
T PLN02334 9 IIAPSILSADFANLAEEAKRVLDAGADWLHVDVM--------DGHFV----PNLTIGPPVVKALRKHTDAPLDCHLMV-- 74 (229)
T ss_pred eEEeehhhcCHHHHHHHHHHHHHcCCCEEEEecc--------cCCcC----CccccCHHHHHHHHhcCCCcEEEEecc--
Confidence 4667777778778889999999999999888431 11111 111111256666766666665554333
Q ss_pred CCCccHHHHHHHHHHHhhcCCccEEEEccCc-cccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCC-CCHHHHH
Q 017176 146 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK-ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI-NTVDEVN 223 (376)
Q Consensus 146 ~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~-~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI-~s~~da~ 223 (376)
.+.. +.++ . +.++|+|.|++|.+. .. . .....+..+.+. ++-+-..-.- +..+.++
T Consensus 75 ~~p~---d~~~---~-~~~~gad~v~vH~~q~~~--d-----------~~~~~~~~i~~~--g~~iGls~~~~t~~~~~~ 132 (229)
T PLN02334 75 TNPE---DYVP---D-FAKAGASIFTFHIEQAST--I-----------HLHRLIQQIKSA--GMKAGVVLNPGTPVEAVE 132 (229)
T ss_pred CCHH---HHHH---H-HHHcCCCEEEEeeccccc--h-----------hHHHHHHHHHHC--CCeEEEEECCCCCHHHHH
Confidence 2212 2221 1 236899999999872 10 0 002344444432 3322222222 2345555
Q ss_pred HHHHc-CcCeeEEch
Q 017176 224 AALRK-GAHHVMVGR 237 (376)
Q Consensus 224 ~~l~~-Gad~VmiGR 237 (376)
+.+.. |+|.|++|.
T Consensus 133 ~~~~~~~~Dyi~~~~ 147 (229)
T PLN02334 133 PVVEKGLVDMVLVMS 147 (229)
T ss_pred HHHhccCCCEEEEEE
Confidence 55554 399999864
|
|
| >PRK11572 copper homeostasis protein CutC; Provisional | Back alignment and domain information |
|---|
Probab=91.75 E-value=5.2 Score=37.39 Aligned_cols=126 Identities=8% Similarity=0.062 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHH
Q 017176 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLC 155 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~ 155 (376)
.+.+.+-++.++++|+|+|-+-+=.|. +. -|.+.+.++++... +.|+|.--- +|...+..+.+
T Consensus 72 ~~~M~~di~~~~~~GadGvV~G~L~~d------g~------vD~~~~~~Li~~a~---~~~vTFHRA--fD~~~d~~~al 134 (248)
T PRK11572 72 FAAMLEDIATVRELGFPGLVTGVLDVD------GH------VDMPRMRKIMAAAG---PLAVTFHRA--FDMCANPLNAL 134 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeECCC------CC------cCHHHHHHHHHHhc---CCceEEech--hhccCCHHHHH
Confidence 355666777888999999988543222 11 46677788877753 466666422 44433333332
Q ss_pred HHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEE
Q 017176 156 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 235 (376)
Q Consensus 156 ~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vmi 235 (376)
..+. +.|++.|--||+...- .-..+.+.++.+...+.-|+.-||| +.+.+.+..++|+.-|=.
T Consensus 135 ---~~l~-~lG~~rILTSGg~~~a------------~~g~~~L~~lv~~a~~~~Im~GgGV-~~~Nv~~l~~tG~~~~H~ 197 (248)
T PRK11572 135 ---KQLA-DLGVARILTSGQQQDA------------EQGLSLIMELIAASDGPIIMAGAGV-RLSNLHKFLDAGVREVHS 197 (248)
T ss_pred ---HHHH-HcCCCEEECCCCCCCH------------HHHHHHHHHHHHhcCCCEEEeCCCC-CHHHHHHHHHcCCCEEee
Confidence 3333 5799999888765310 0115566777665545447777777 677787777789876654
|
|
| >cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism | Back alignment and domain information |
|---|
Probab=91.66 E-value=1.6 Score=40.21 Aligned_cols=147 Identities=15% Similarity=0.158 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHCCCCEEEecCC--------------------------C--------------------CCccc-cCCCC
Q 017176 78 NLAKATELANAYNYDEINLNCG--------------------------C--------------------PSPKV-AGHGC 110 (376)
Q Consensus 78 ~~~~aa~~~~~~G~d~IeiN~g--------------------------c--------------------P~~~v-~r~g~ 110 (376)
+..++|..++++|+|+|-+|.- . |-+.. .-+++
T Consensus 22 dpv~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~~lNlE~a~t~em~~ia~~~kP~~vtLVPEkr~E~TTeg 101 (234)
T cd00003 22 DPVEAALLAEKAGADGITVHLREDRRHIQDRDVRLLRELVRTELNLEMAPTEEMLEIALEVKPHQVTLVPEKREELTTEG 101 (234)
T ss_pred CHHHHHHHHHHcCCCEEEecCCCCcCcCCHHHHHHHHHHcCCCEEeccCCCHHHHHHHHHCCCCEEEECCCCCCCccCCc
Confidence 4578889999999999988752 1 11111 12444
Q ss_pred ccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCC
Q 017176 111 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190 (376)
Q Consensus 111 yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~ 190 (376)
|-.+..+.+.+.++++.+++. ++.|++-+-+ +.+. ++ ...+.|+|.|.+|.+.-.... .... .
T Consensus 102 -Gldv~~~~~~l~~~i~~l~~~-gI~VSLFiDP------d~~q-i~----~A~~~GAd~VELhTG~Ya~a~-~~~~---~ 164 (234)
T cd00003 102 -GLDVAGQAEKLKPIIERLKDA-GIRVSLFIDP------DPEQ-IE----AAKEVGADRVELHTGPYANAY-DKAE---R 164 (234)
T ss_pred -cchhhcCHHHHHHHHHHHHHC-CCEEEEEeCC------CHHH-HH----HHHHhCcCEEEEechhhhcCC-Cchh---H
Confidence 777788889999999998764 6677764433 1222 11 234689999999976521110 0000 0
Q ss_pred CcccHHHHH---HHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHhhCCc
Q 017176 191 PPLKYEYYY---ALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 191 ~~~~~~~v~---~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~ 244 (376)
.--++.+. +...+. ++-|=+--|+ +.+.+..+.+ .+..=|-||.+++.+--
T Consensus 165 -~~el~~i~~aa~~a~~~-GL~VnAGHgL-ny~Nv~~i~~ip~i~ElnIGHsiia~Al 219 (234)
T cd00003 165 -EAELERIAKAAKLAREL-GLGVNAGHGL-NYENVKPIAKIPGIAELNIGHAIISRAL 219 (234)
T ss_pred -HHHHHHHHHHHHHHHHc-CCEEecCCCC-CHHHHHHHHhCCCCeEEccCHHHHHHHH
Confidence 00022222 222222 5655555565 7788777766 78888999999877654
|
In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed, |
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=91.64 E-value=13 Score=35.47 Aligned_cols=157 Identities=15% Similarity=0.105 Sum_probs=90.6
Q ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEE
Q 017176 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 140 (376)
Q Consensus 61 ~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vK 140 (376)
.+...|+++++.+.+.++..+.|+.++++|+|+|-+-. |. |.. ...+.+.+-.+.|.+.++.|+.+-
T Consensus 67 ~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~p--P~--------~~~---~~~~~i~~~~~~ia~~~~~pv~lY 133 (292)
T PRK03170 67 VNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVT--PY--------YNK---PTQEGLYQHFKAIAEATDLPIILY 133 (292)
T ss_pred hCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECC--Cc--------CCC---CCHHHHHHHHHHHHhcCCCCEEEE
Confidence 44567999999999999999999999999999998842 32 110 134667788888887788998876
Q ss_pred ecCCCCCC-ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCH
Q 017176 141 CRIGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV 219 (376)
Q Consensus 141 iR~g~~~~-~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~ 219 (376)
--++.... -+. ++ +.++.+.-.+-.+--+.. +...+.++.+..++--.+.+|. -
T Consensus 134 n~P~~~g~~l~~-~~---~~~L~~~p~v~giK~s~~------------------d~~~~~~~~~~~~~~~~v~~G~---d 188 (292)
T PRK03170 134 NVPGRTGVDILP-ET---VARLAEHPNIVGIKEATG------------------DLERVSELIELVPDDFAVYSGD---D 188 (292)
T ss_pred ECccccCCCCCH-HH---HHHHHcCCCEEEEEECCC------------------CHHHHHHHHHhCCCCeEEEECC---h
Confidence 43321111 122 22 233322122333222111 1333444444333222344442 1
Q ss_pred HHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhC
Q 017176 220 DEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256 (376)
Q Consensus 220 ~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 256 (376)
..+...+..|++|++.|.+-+ .|.++.+.++....|
T Consensus 189 ~~~~~~l~~G~~G~is~~~n~-~P~~~~~l~~~~~~g 224 (292)
T PRK03170 189 ALALPFLALGGVGVISVAANV-APKEMAEMCDAALAG 224 (292)
T ss_pred HhHHHHHHcCCCEEEEhHHhh-hHHHHHHHHHHHHCC
Confidence 223455668999999888753 477765555544444
|
|
| >PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF | Back alignment and domain information |
|---|
Probab=91.60 E-value=3.1 Score=37.63 Aligned_cols=124 Identities=11% Similarity=0.187 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHH
Q 017176 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLC 155 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~ 155 (376)
.+.+.+-++.++++|+|++-+-+=.+ .+. -|.+.+.+++++.. +.|++. .| -+|...+..+.+
T Consensus 71 ~~~M~~dI~~~~~~GadG~VfG~L~~------dg~------iD~~~~~~Li~~a~---~~~~tF-HR-AfD~~~d~~~al 133 (201)
T PF03932_consen 71 IEIMKEDIRMLRELGADGFVFGALTE------DGE------IDEEALEELIEAAG---GMPVTF-HR-AFDEVPDPEEAL 133 (201)
T ss_dssp HHHHHHHHHHHHHTT-SEEEE--BET------TSS------B-HHHHHHHHHHHT---TSEEEE--G-GGGGSSTHHHHH
T ss_pred HHHHHHHHHHHHHcCCCeeEEEeECC------CCC------cCHHHHHHHHHhcC---CCeEEE-eC-cHHHhCCHHHHH
Confidence 35566777788999999998854212 111 36678888888765 567777 33 355544444443
Q ss_pred HHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHH-cCcCee
Q 017176 156 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALR-KGAHHV 233 (376)
Q Consensus 156 ~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~-~Gad~V 233 (376)
+ .+. +.|++.|--||+.... .-..+.++++++.. .+|.|+.-||| +.+.+..+++ +|+.-+
T Consensus 134 ~---~L~-~lG~~rVLTSGg~~~a------------~~g~~~L~~lv~~a~~~i~Im~GgGv-~~~nv~~l~~~tg~~~~ 196 (201)
T PF03932_consen 134 E---QLI-ELGFDRVLTSGGAPTA------------LEGIENLKELVEQAKGRIEIMPGGGV-RAENVPELVEETGVREI 196 (201)
T ss_dssp H---HHH-HHT-SEEEESTTSSST------------TTCHHHHHHHHHHHTTSSEEEEESS---TTTHHHHHHHHT-SEE
T ss_pred H---HHH-hcCCCEEECCCCCCCH------------HHHHHHHHHHHHHcCCCcEEEecCCC-CHHHHHHHHHhhCCeEE
Confidence 3 333 4699998888765210 01155566665443 36889999999 5566777777 887755
|
A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B. |
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=91.51 E-value=5.6 Score=39.09 Aligned_cols=158 Identities=12% Similarity=0.158 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHCCCCEEEecC-------CCCCccccCCCCccccccCCHHH----HHHHHHHHhcc-cCccEEEEecC
Q 017176 76 LDNLAKATELANAYNYDEINLNC-------GCPSPKVAGHGCFGVSLMLDPKF----VGEAMSVIAAN-TNVPVSVKCRI 143 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~-------gcP~~~v~r~g~yG~~l~~~~~~----~~eiv~~v~~~-~~~pv~vKiR~ 143 (376)
.....+..+.+.++||.+|++-. |-|.+.+.+..+ ..+++|..-+ +..+++.+++. .++|+.+-+--
T Consensus 68 ~~~~~~~~~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~-~~~~~N~~gl~n~g~~~~~~~l~~~~~~~pvivsI~~ 146 (344)
T PRK05286 68 FDKNGEAIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPE-DEALINRMGFNNDGADALAERLKKAYRGIPLGINIGK 146 (344)
T ss_pred CCCChHHHHHHHHcCCCEEEeCCcCCCCCCCCCCCCEEeccc-ccccccCCCCCCHhHHHHHHHHHHhcCCCcEEEEEec
Confidence 33455677778899999999853 333333332221 1223332221 34444444433 56888887732
Q ss_pred C--CCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC----CCeEEE--ecC
Q 017176 144 G--VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP----DLTFTL--NGG 215 (376)
Q Consensus 144 g--~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~----~ipVi~--nGg 215 (376)
. .+.....++.++.+.++ + .++|+|.+.-......|... ...+....+.+.++++... ++||++ +-+
T Consensus 147 ~~~~~~~~~~~d~~~~~~~~-~-~~ad~lelN~scP~~~g~~~---~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~ 221 (344)
T PRK05286 147 NKDTPLEDAVDDYLICLEKL-Y-PYADYFTVNISSPNTPGLRD---LQYGEALDELLAALKEAQAELHGYVPLLVKIAPD 221 (344)
T ss_pred CCCCCcccCHHHHHHHHHHH-H-hhCCEEEEEccCCCCCCccc---ccCHHHHHHHHHHHHHHHhccccCCceEEEeCCC
Confidence 1 11112345555544433 2 26999987532221112110 0111112345555555442 288874 334
Q ss_pred CC--CHHHHHHHHH-cCcCeeEEchHH
Q 017176 216 IN--TVDEVNAALR-KGAHHVMVGRAA 239 (376)
Q Consensus 216 I~--s~~da~~~l~-~Gad~VmiGRa~ 239 (376)
+. +..++.++++ .|+|+|.+--..
T Consensus 222 ~~~~~~~~ia~~l~~~Gadgi~~~nt~ 248 (344)
T PRK05286 222 LSDEELDDIADLALEHGIDGVIATNTT 248 (344)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCc
Confidence 43 2334444444 899998875433
|
|
| >PRK05265 pyridoxine 5'-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=91.45 E-value=2.1 Score=39.63 Aligned_cols=146 Identities=14% Similarity=0.149 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHCCCCEEEecCC--------------------------C--------------------CCccc-cCCCC
Q 017176 78 NLAKATELANAYNYDEINLNCG--------------------------C--------------------PSPKV-AGHGC 110 (376)
Q Consensus 78 ~~~~aa~~~~~~G~d~IeiN~g--------------------------c--------------------P~~~v-~r~g~ 110 (376)
+..++|..++++|+|+|-+|.- . |-... .-+++
T Consensus 25 d~v~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~~lNlE~a~~~em~~ia~~~kP~~vtLVPE~r~E~TTeg 104 (239)
T PRK05265 25 DPVRAALIAEQAGADGITVHLREDRRHIRDRDVRLLRETLKTELNLEMAATEEMLDIALEVKPHQVTLVPEKREELTTEG 104 (239)
T ss_pred CHHHHHHHHHHcCCCEEEecCCCCcccCCHHHHHHHHHhcCCCEEeccCCCHHHHHHHHHCCCCEEEECCCCCCCccCCc
Confidence 4678888999999999988752 1 11111 12444
Q ss_pred ccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCC
Q 017176 111 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190 (376)
Q Consensus 111 yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~ 190 (376)
|-.+..+.+.+.++++.+++. ++.|++-+-+ +.+. ++ ...+.|+|.|.+|.+.-.... ....
T Consensus 105 -Gldv~~~~~~l~~~i~~L~~~-gIrVSLFidP------~~~q-i~----~A~~~GAd~VELhTG~yA~a~-~~~~---- 166 (239)
T PRK05265 105 -GLDVAGQFDKLKPAIARLKDA-GIRVSLFIDP------DPEQ-IE----AAAEVGADRIELHTGPYADAK-TEAE---- 166 (239)
T ss_pred -cchhhcCHHHHHHHHHHHHHC-CCEEEEEeCC------CHHH-HH----HHHHhCcCEEEEechhhhcCC-Ccch----
Confidence 777788889999999998753 6677765422 2222 11 234689999999977521110 0000
Q ss_pred CcccHHHHH---HHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHhhCCc
Q 017176 191 PPLKYEYYY---ALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 191 ~~~~~~~v~---~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~ 244 (376)
.--++.+. +...+. ++-|=+-.|+ +.+.+..+.. .+.+=|-||.+++.+--
T Consensus 167 -~~el~~~~~aa~~a~~l-GL~VnAGHgL-ny~Nv~~i~~ip~i~EvnIGHsiia~Al 221 (239)
T PRK05265 167 -AAELERIAKAAKLAASL-GLGVNAGHGL-NYHNVKPIAAIPGIEELNIGHAIIARAL 221 (239)
T ss_pred -HHHHHHHHHHHHHHHHc-CCEEecCCCC-CHHhHHHHhhCCCCeEEccCHHHHHHHH
Confidence 00022222 222222 5666666666 7777777655 68889999999887654
|
|
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=91.35 E-value=10 Score=36.27 Aligned_cols=110 Identities=11% Similarity=0.073 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcC--CccEEEEccCccccCCCCCCCCCCCCcccHH
Q 017176 119 PKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLS--PTRHFIIHSRKALLNGISPAENRTIPPLKYE 196 (376)
Q Consensus 119 ~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~--Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~ 196 (376)
.+...+.+....+..+.|+.+-+.. . +.+++.+. ++.++++ ++|+|.+.-......+.+ ......+....+
T Consensus 75 ~~~~~~~~~~~~~~~~~pl~~qi~g--~---~~~~~~~~-a~~~~~~~~~~d~ielN~~cP~~~~~g-~~l~~~~~~~~e 147 (300)
T TIGR01037 75 VEAFLEELKPVREEFPTPLIASVYG--S---SVEEFAEV-AEKLEKAPPYVDAYELNLSCPHVKGGG-IAIGQDPELSAD 147 (300)
T ss_pred HHHHHHHHHHHhccCCCcEEEEeec--C---CHHHHHHH-HHHHHhccCccCEEEEECCCCCCCCCc-cccccCHHHHHH
Confidence 4444555554445556788877643 1 23344443 3344555 399999864433222211 111111122245
Q ss_pred HHHHHHhhCCCCeEEEec--CCCCHHHHHHHHH-cCcCeeEEc
Q 017176 197 YYYALLRDFPDLTFTLNG--GINTVDEVNAALR-KGAHHVMVG 236 (376)
Q Consensus 197 ~v~~~~~~~~~ipVi~nG--gI~s~~da~~~l~-~Gad~VmiG 236 (376)
.+.++++.. ++||++=- ++.+..++.+.++ .|+|++.+.
T Consensus 148 iv~~vr~~~-~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 148 VVKAVKDKT-DVPVFAKLSPNVTDITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred HHHHHHHhc-CCCEEEECCCChhhHHHHHHHHHHcCCCEEEEE
Confidence 556665544 78887543 3434444444454 899999873
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate | Back alignment and domain information |
|---|
Probab=91.16 E-value=1.2 Score=40.16 Aligned_cols=181 Identities=14% Similarity=0.203 Sum_probs=88.8
Q ss_pred CCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEe
Q 017176 17 MDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINL 96 (376)
Q Consensus 17 ~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~Iei 96 (376)
+|.|+..=..++...| ++++..-+.......-......++....+ +..|=++.+.+ ..+..+.+++++.|.|.|
T Consensus 4 CGi~~~~da~~~~~~g-~d~~Gfi~~~~S~R~v~~~~a~~l~~~~~---~~~VgVf~~~~--~~~I~~~~~~~~ld~vQL 77 (197)
T PF00697_consen 4 CGITRPEDARLAAELG-ADYLGFIFYPKSPRYVSPDQARELVSAVP---PKIVGVFVNQS--PEEILEIVEELGLDVVQL 77 (197)
T ss_dssp E---SHHHHHHHHHHT-SSEEEEE--TTCTTB--HHHHHHHHCCSS---SSEEEEESSS---HHHHHHHHHHCTESEEEE
T ss_pred CCCCcHHHHHHHHHcC-CCEEeeecCCCCCCccCHHHHHHHHHhcC---CCEEEEEcCCC--HHHHHHHHHHcCCCEEEE
Confidence 4666666666777776 54432212111111111112233333222 21444555542 344556678899999999
Q ss_pred cCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCc
Q 017176 97 NCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK 176 (376)
Q Consensus 97 N~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~ 176 (376)
|..- +. +.++.++. ++|+.-.++...+.. ..+. +.....+|++.+.++.
T Consensus 78 HG~e------------------~~---e~~~~l~~--~~~vi~~~~v~~~~~-~~~~-------~~~~~~~d~~LlD~~~ 126 (197)
T PF00697_consen 78 HGDE------------------SP---EYIKLLRA--GLPVIKAIHVDKDID-LLDY-------LERYESVDYFLLDSGS 126 (197)
T ss_dssp -SGG-------------------H---HHHHHHHT--TSEEEEEEEESSCHS-CCHH-------CHCSTT-SEEEEESSS
T ss_pred CCCC------------------CH---HHHHHhhc--CceEEEEEEeCCccc-hHHH-------HHhcccccEEeEccCC
Confidence 8411 11 22233332 467776666643221 1111 1112334899888432
Q ss_pred cccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHhhCCch
Q 017176 177 ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 177 ~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~l 245 (376)
+|.+ ...+|+.+.++.+...+.|++..||| +++.+.++++ .+..+|=+-+|.=.+|-.
T Consensus 127 ---GgtG-------~~~dw~~~~~~~~~~~~~p~iLAGGl-~p~NV~~ai~~~~p~gvDvsSGvE~~pG~ 185 (197)
T PF00697_consen 127 ---GGTG-------KTFDWSLLKKIVESYSPKPVILAGGL-NPENVREAIRQVRPYGVDVSSGVETSPGV 185 (197)
T ss_dssp ---TSSS-------S---GGGGCCCHHT-GTSTEEEESS---TTTHHHHHHHC--SEEEESGGGEEETTE
T ss_pred ---CcCC-------cccCHHHhhhhhhhcccCcEEEEcCC-ChHHHHHHHHhcCceEEEeCCccccCCCC
Confidence 2211 11235544444443336899999999 7888888888 889999999998777754
|
In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A. |
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=91.10 E-value=4.5 Score=38.95 Aligned_cols=111 Identities=19% Similarity=0.197 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 152 (376)
|.+.+.+.++.+.+.|.|+|=++ |.-|-+..-..+.=.++++.+++.+ .+||.+-+.. .+.+
T Consensus 23 D~~a~~~lv~~li~~Gv~gi~~~-----------GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~-----~~t~ 86 (299)
T COG0329 23 DEEALRRLVEFLIAAGVDGLVVL-----------GTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGS-----NSTA 86 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEC-----------CCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCC-----CcHH
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL 212 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~ 212 (376)
+.++ +++.+++.|+|+|-+.. +.-+......-++++..+.++. ++|||.
T Consensus 87 eai~-lak~a~~~Gad~il~v~---------PyY~k~~~~gl~~hf~~ia~a~-~lPvil 135 (299)
T COG0329 87 EAIE-LAKHAEKLGADGILVVP---------PYYNKPSQEGLYAHFKAIAEAV-DLPVIL 135 (299)
T ss_pred HHHH-HHHHHHhcCCCEEEEeC---------CCCcCCChHHHHHHHHHHHHhc-CCCEEE
|
|
| >TIGR00683 nanA N-acetylneuraminate lyase | Back alignment and domain information |
|---|
Probab=90.90 E-value=15 Score=35.04 Aligned_cols=156 Identities=12% Similarity=0.065 Sum_probs=90.0
Q ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEE
Q 017176 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSV 139 (376)
Q Consensus 61 ~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~v 139 (376)
.....|+++++.+.+.++..+.++.++++|+|+|-+- -|... . ...+.+.+-.++|.+.+ +.|+.+
T Consensus 67 ~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~--~P~y~-------~----~~~~~i~~yf~~v~~~~~~lpv~l 133 (290)
T TIGR00683 67 AKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAV--TPFYY-------K----FSFPEIKHYYDTIIAETGGLNMIV 133 (290)
T ss_pred hCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEe--CCcCC-------C----CCHHHHHHHHHHHHhhCCCCCEEE
Confidence 4456799999999999999999999999999999883 24321 1 13466777777776655 689887
Q ss_pred EecCCCCCC-ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCC
Q 017176 140 KCRIGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 218 (376)
Q Consensus 140 KiR~g~~~~-~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s 218 (376)
---++.... -+. ++ +.++.+.-.+-.|--..+ +...+.++++..+++. +.+|.
T Consensus 134 Yn~P~~tg~~l~~-~~---i~~L~~~pnv~giK~s~~------------------d~~~~~~~~~~~~~~~-v~~G~--- 187 (290)
T TIGR00683 134 YSIPFLTGVNMGI-EQ---FGELYKNPKVLGVKFTAG------------------DFYLLERLKKAYPNHL-IWAGF--- 187 (290)
T ss_pred EeCccccccCcCH-HH---HHHHhcCCCEEEEEeCCC------------------CHHHHHHHHHhCCCCE-EEECc---
Confidence 643322211 122 22 233332122222221111 1344455555555554 44554
Q ss_pred HHHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhC
Q 017176 219 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256 (376)
Q Consensus 219 ~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 256 (376)
-+.+...+..|++|.+.|.+-+. |..+.+..+....|
T Consensus 188 d~~~~~~l~~G~~G~i~~~~n~~-P~~~~~i~~~~~~g 224 (290)
T TIGR00683 188 DEMMLPAASLGVDGAIGSTFNVN-GVRARQIFELTKAG 224 (290)
T ss_pred hHHHHHHHHCCCCEEEecHHHhC-HHHHHHHHHHHHCC
Confidence 13344556679999997755442 66654444443344
|
N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate. |
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=90.89 E-value=2.4 Score=40.93 Aligned_cols=90 Identities=14% Similarity=0.157 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHH
Q 017176 118 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 197 (376)
Q Consensus 118 ~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~ 197 (376)
.++.+.+-++++++.++.|+.|-+..- . ....+.++. +.+.|++.|.++.+.. .+.
T Consensus 46 ~~~~l~~~i~~~~~~t~~pfgvn~~~~-~--~~~~~~~~~----~~~~~v~~v~~~~g~p-----------------~~~ 101 (307)
T TIGR03151 46 PPDVVRKEIRKVKELTDKPFGVNIMLL-S--PFVDELVDL----VIEEKVPVVTTGAGNP-----------------GKY 101 (307)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEeeecC-C--CCHHHHHHH----HHhCCCCEEEEcCCCc-----------------HHH
Confidence 588899999999988888988766442 1 223333332 2358999998764321 234
Q ss_pred HHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEE
Q 017176 198 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 235 (376)
Q Consensus 198 v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vmi 235 (376)
+.++++. +++|+. .|.+.+.+.++.+.|+|.|.+
T Consensus 102 i~~lk~~--g~~v~~--~v~s~~~a~~a~~~GaD~Ivv 135 (307)
T TIGR03151 102 IPRLKEN--GVKVIP--VVASVALAKRMEKAGADAVIA 135 (307)
T ss_pred HHHHHHc--CCEEEE--EcCCHHHHHHHHHcCCCEEEE
Confidence 5555443 677774 889999999999999999987
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate | Back alignment and domain information |
|---|
Probab=90.86 E-value=5.1 Score=40.13 Aligned_cols=120 Identities=13% Similarity=0.069 Sum_probs=75.5
Q ss_pred CHHHHHHHHHHHH-HCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC-ccEEEEecCCCCCCccHH
Q 017176 75 NLDNLAKATELAN-AYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~-~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~-~pv~vKiR~g~~~~~~~~ 152 (376)
+++++.+.++.+. +.||..+-|..|- .+++.-.+.|+++|+.++ +.+.+-.--+| +.+
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~----------------~~~~~di~~v~avRea~~~~~l~vDaN~~w----~~~ 227 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKGGV----------------LPGEEEIEAVKALAEAFPGARLRLDPNGAW----SLE 227 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCC----------------CCHHHHHHHHHHHHHhCCCCcEEEeCCCCc----CHH
Confidence 6777877776665 4699999885431 234555678888888762 23333333233 244
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcC
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAH 231 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad 231 (376)
+.++++ +.+++ ++.+|. . .++ +++.++++++.. ++||.+.=.+.+.+++.++++ ..+|
T Consensus 228 ~A~~~~-~~l~~-~l~~iE----e------------P~~--d~~~~~~L~~~~-~~PIa~dEs~~~~~~~~~~i~~~avd 286 (395)
T cd03323 228 TAIRLA-KELEG-VLAYLE----D------------PCG--GREGMAEFRRAT-GLPLATNMIVTDFRQLGHAIQLNAVD 286 (395)
T ss_pred HHHHHH-HhcCc-CCCEEE----C------------CCC--CHHHHHHHHHhc-CCCEEcCCcccCHHHHHHHHHcCCCc
Confidence 545443 34455 666544 0 111 366667777664 899988777899999999998 4578
Q ss_pred eeEE
Q 017176 232 HVMV 235 (376)
Q Consensus 232 ~Vmi 235 (376)
.+++
T Consensus 287 il~~ 290 (395)
T cd03323 287 IPLA 290 (395)
T ss_pred EEee
Confidence 7743
|
GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. |
| >TIGR03586 PseI pseudaminic acid synthase | Back alignment and domain information |
|---|
Probab=90.77 E-value=13 Score=36.19 Aligned_cols=130 Identities=12% Similarity=0.099 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEe-----------cCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCC
Q 017176 76 LDNLAKATELANAYNYDEINL-----------NCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG 144 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~Iei-----------N~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g 144 (376)
.+++.+..+.+++.|.+.+-- .+++|.-|+ |+.-+++..++..+-+ +++||.+|.-.+
T Consensus 76 ~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KI------~S~~~~n~~LL~~va~-----~gkPvilstG~~ 144 (327)
T TIGR03586 76 WEWHKELFERAKELGLTIFSSPFDETAVDFLESLDVPAYKI------ASFEITDLPLIRYVAK-----TGKPIIMSTGIA 144 (327)
T ss_pred HHHHHHHHHHHHHhCCcEEEccCCHHHHHHHHHcCCCEEEE------CCccccCHHHHHHHHh-----cCCcEEEECCCC
Confidence 456666777777777666533 234555443 5555677777666543 488999886652
Q ss_pred CCCCccHHHHHHHHHHHhhcCCc-cEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHH
Q 017176 145 VDDHDSYNQLCDFIYKVSSLSPT-RHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 223 (376)
Q Consensus 145 ~~~~~~~~~~~~~i~~~~e~~Gv-d~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~ 223 (376)
+++|+...+. .+.+.|. +.+.+|+ +..| .. ....+++..+..+++.+ ++||..++--....-..
T Consensus 145 -----t~~Ei~~Av~-~i~~~g~~~i~LlhC-~s~Y--P~-----~~~~~nL~~i~~lk~~f-~~pVG~SDHt~G~~~~~ 209 (327)
T TIGR03586 145 -----TLEEIQEAVE-ACREAGCKDLVLLKC-TSSY--PA-----PLEDANLRTIPDLAERF-NVPVGLSDHTLGILAPV 209 (327)
T ss_pred -----CHHHHHHHHH-HHHHCCCCcEEEEec-CCCC--CC-----CcccCCHHHHHHHHHHh-CCCEEeeCCCCchHHHH
Confidence 3444444333 3346787 5666786 3222 11 11234577777777777 89997765444444455
Q ss_pred HHHHcCcC
Q 017176 224 AALRKGAH 231 (376)
Q Consensus 224 ~~l~~Gad 231 (376)
.+...||+
T Consensus 210 aAva~GA~ 217 (327)
T TIGR03586 210 AAVALGAC 217 (327)
T ss_pred HHHHcCCC
Confidence 55567887
|
|
| >PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=90.76 E-value=13 Score=33.83 Aligned_cols=175 Identities=11% Similarity=0.166 Sum_probs=88.1
Q ss_pred CCCChHHHHHHHHHhCCCcEEEecceeeccccc--ccchhhhhhc-cCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCE
Q 017176 17 MDWTDNHYRTLARLISKHAWLYTEMLAAETIIY--QQGNLDRFLA-FSPEQHPIVLQIGGSNLDNLAKATELANAYNYDE 93 (376)
Q Consensus 17 ~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~--~~~~~~~~~~-~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~ 93 (376)
+|+|+..=..++.++| ++.+ +++....--+ .......+.. +.+.-.+++|= ...+++.. .+.+++.+.|.
T Consensus 6 CGit~~eda~~~~~~G-aD~i--GfIf~~~SpR~V~~~~a~~i~~~~~~~~~~VgVf-~~~~~~~i---~~~~~~~~~d~ 78 (207)
T PRK13958 6 CGFTTIKDVTAASQLP-IDAI--GFIHYEKSKRHQTITQIKKLASAVPNHIDKVCVV-VNPDLTTI---EHILSNTSINT 78 (207)
T ss_pred cCCCcHHHHHHHHHcC-CCEE--EEecCCCCcccCCHHHHHHHHHhCCCCCCEEEEE-eCCCHHHH---HHHHHhCCCCE
Confidence 5778888777787776 5544 3332111000 1111122322 22222233331 23445544 44566789999
Q ss_pred EEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEE
Q 017176 94 INLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII 172 (376)
Q Consensus 94 IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~v 172 (376)
|.||..- ++++ ++.+++.. .+++.--++. ++ ... ..+... . ..+|++.+
T Consensus 79 vQLHG~e-----------------~~~~----~~~l~~~~~~~~iika~~~--~~-~~~----~~~~~~-~-~~~d~~Ll 128 (207)
T PRK13958 79 IQLHGTE-----------------SIDF----IQEIKKKYSSIKIIKALPA--DE-NII----QNINKY-K-GFVDLFII 128 (207)
T ss_pred EEECCCC-----------------CHHH----HHHHhhcCCCceEEEEecc--cH-HHH----HHHHHH-H-hhCCEEEE
Confidence 9998521 1222 33344322 2444333333 21 111 111211 1 24788888
Q ss_pred ccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH--cCcCeeEEchHHh
Q 017176 173 HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR--KGAHHVMVGRAAY 240 (376)
Q Consensus 173 h~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~--~Gad~VmiGRa~l 240 (376)
.......+|.+ ...+|+.+..+ ...|++..||| +++.+.+++. .+..+|=+.+|.=
T Consensus 129 Ds~~~~~GGtG-------~~~dw~~~~~~----~~~p~iLAGGL-~peNV~~a~~~~~~p~gVDvsSGVE 186 (207)
T PRK13958 129 DTPSVSYGGTG-------QTYDWTILKHI----KDIPYLIAGGI-NSENIQTVEQLKLSHQGYDIASGIE 186 (207)
T ss_pred cCCCCCCCcCC-------cEeChHHhhhc----cCCCEEEECCC-CHHHHHHHHhcCCCCCEEEcccccC
Confidence 76432223322 12247666543 24689999999 7888888764 4667777776653
|
|
| >PRK02412 aroD 3-dehydroquinate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=90.72 E-value=14 Score=34.49 Aligned_cols=97 Identities=18% Similarity=0.150 Sum_probs=65.0
Q ss_pred CCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecC
Q 017176 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRI 143 (376)
Q Consensus 65 ~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~ 143 (376)
..+++-|.|.+++++.+.++.+...|+|.||+=+ |.+.. ..+.+.+.+++..+++.. ++|+.+-+|.
T Consensus 16 ~~i~v~l~~~~~~e~~~~~~~~~~~~aD~vElRl----------D~l~~--~~~~~~~~~~~~~l~~~~~~~PiI~T~R~ 83 (253)
T PRK02412 16 PKIIVPIMGKTLEEVLAEALAISKYDADIIEWRA----------DFLEK--ISDVESVLAAAPAIREKFAGKPLLFTFRT 83 (253)
T ss_pred cEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEe----------chhhc--cCCHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 3578889999999999999888888999999954 22221 124567777888887754 5799988887
Q ss_pred CCCCC---ccHHHHHHHHHHHhhcCC-ccEEEEcc
Q 017176 144 GVDDH---DSYNQLCDFIYKVSSLSP-TRHFIIHS 174 (376)
Q Consensus 144 g~~~~---~~~~~~~~~i~~~~e~~G-vd~I~vh~ 174 (376)
-++.. .+-++-.+.+..++ +.| +|+|.|--
T Consensus 84 ~~eGG~~~~~~~~~~~ll~~~~-~~~~~d~vDiEl 117 (253)
T PRK02412 84 AKEGGEIALSDEEYLALIKAVI-KSGLPDYIDVEL 117 (253)
T ss_pred hhhCCCCCCCHHHHHHHHHHHH-hcCCCCEEEEec
Confidence 54321 11222233334444 467 89999864
|
|
| >PRK06096 molybdenum transport protein ModD; Provisional | Back alignment and domain information |
|---|
Probab=90.65 E-value=3.1 Score=39.78 Aligned_cols=92 Identities=12% Similarity=0.132 Sum_probs=57.6
Q ss_pred HHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHH
Q 017176 122 VGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA 200 (376)
Q Consensus 122 ~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~ 200 (376)
+.+.++.+|+.. ..+|.|-+ ++++++.+. + ++|+|.|-+...+. +.+.+
T Consensus 176 i~~av~~~r~~~~~~kIeVEv-------~tleqa~ea----~-~agaDiI~LDn~~~------------------e~l~~ 225 (284)
T PRK06096 176 WSGAINQLRRHAPEKKIVVEA-------DTPKEAIAA----L-RAQPDVLQLDKFSP------------------QQATE 225 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEEC-------CCHHHHHHH----H-HcCCCEEEECCCCH------------------HHHHH
Confidence 345566666544 23455532 345554432 2 59999998854331 22222
Q ss_pred HH---h-hCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 201 LL---R-DFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 201 ~~---~-~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
.+ + ..+++.+-++||| +.+.+.+..++|+|.+.+|---.. |++
T Consensus 226 av~~~~~~~~~~~leaSGGI-~~~ni~~yA~tGvD~Is~gal~~a-~~~ 272 (284)
T PRK06096 226 IAQIAPSLAPHCTLSLAGGI-NLNTLKNYADCGIRLFITSAPYYA-APA 272 (284)
T ss_pred HHHHhhccCCCeEEEEECCC-CHHHHHHHHhcCCCEEEECccccC-CCc
Confidence 22 2 2357889999999 899999999999999988865333 553
|
|
| >PRK02714 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=90.60 E-value=8.6 Score=37.30 Aligned_cols=123 Identities=7% Similarity=0.133 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC--ccEEEEecCCCCCCccHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~--~pv~vKiR~g~~~~~~~~ 152 (376)
+++.+.+.++...+.||..+-+..|- .+++.-.+.|+++++.++ ..+.+-.--+|+ .+
T Consensus 118 ~~~~~~~~a~~~~~~G~~~~KvKvG~----------------~~~~~d~~~v~air~~~g~~~~l~vDaN~~w~----~~ 177 (320)
T PRK02714 118 AGEAALQQWQTLWQQGYRTFKWKIGV----------------DPLEQELKIFEQLLERLPAGAKLRLDANGGLS----LE 177 (320)
T ss_pred CCHHHHHHHHHHHHcCCCEEEEEECC----------------CChHHHHHHHHHHHHhcCCCCEEEEECCCCCC----HH
Confidence 34556666666666788887663220 234445566777777653 333333333343 33
Q ss_pred HHHHHHHHHhhc---CCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHc-
Q 017176 153 QLCDFIYKVSSL---SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK- 228 (376)
Q Consensus 153 ~~~~~i~~~~e~---~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~- 228 (376)
+..+++. .+++ .++.+|- ..+++.+++...++.+.. ++||.+.=.+.+..|+..+++.
T Consensus 178 ~A~~~~~-~l~~l~~~~i~~iE----------------qP~~~~~~~~~~~l~~~~-~~Pia~DEs~~~~~d~~~~~~~~ 239 (320)
T PRK02714 178 EAKRWLQ-LCDRRLSGKIEFIE----------------QPLPPDQFDEMLQLSQDY-QTPIALDESVANLAQLQQCYQQG 239 (320)
T ss_pred HHHHHHH-HHhhccCCCccEEE----------------CCCCcccHHHHHHHHHhC-CCCEEECCccCCHHHHHHHHHcC
Confidence 4344333 2333 3555443 012222356666776654 8999998899999999999985
Q ss_pred CcCeeEE
Q 017176 229 GAHHVMV 235 (376)
Q Consensus 229 Gad~Vmi 235 (376)
.+|.|++
T Consensus 240 a~d~v~i 246 (320)
T PRK02714 240 WRGIFVI 246 (320)
T ss_pred CCCEEEE
Confidence 4566554
|
|
| >cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria | Back alignment and domain information |
|---|
Probab=90.59 E-value=21 Score=36.12 Aligned_cols=192 Identities=14% Similarity=0.112 Sum_probs=107.9
Q ss_pred cCCCCChHHHHHHH--HHhCCCcEEE-ecceeecccccccchhhhhh----c-cCCCC--CCEEEEecCCCHHHHHHHHH
Q 017176 15 PMMDWTDNHYRTLA--RLISKHAWLY-TEMLAAETIIYQQGNLDRFL----A-FSPEQ--HPIVLQIGGSNLDNLAKATE 84 (376)
Q Consensus 15 PM~~~td~~~r~~~--~~~Gg~gl~~-te~v~~~~~~~~~~~~~~~~----~-~~~~~--~p~~vQL~g~~~~~~~~aa~ 84 (376)
|-.|.|..++..++ ...||++++= -|.+....+..-.+...... + ..+++ .-..++|.+ +++++.+-++
T Consensus 169 PklGLsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~f~p~~eRv~~~~~ai~~a~~eTG~~~~ya~NiT~-~~~em~~ra~ 247 (424)
T cd08208 169 PNIGLPPGEFAELGYQSWLGGLDIAKDDEMLADVDWCPLEERAALLGKARRRAEAETGVPKIYLANITD-EVDRLMELHD 247 (424)
T ss_pred ccccCCHHHHHHHHHHHHcCCcccccccccccCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEccC-CHHHHHHHHH
Confidence 66688888998876 4567777653 23333222222111111111 0 11223 236789988 6999999999
Q ss_pred HHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCC-------CccHHHHHHH
Q 017176 85 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD-------HDSYNQLCDF 157 (376)
Q Consensus 85 ~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~-------~~~~~~~~~~ 157 (376)
.++++|...+-+|.. .. |- ..++.+++..++|+-. .|.++.- .-+. ..
T Consensus 248 ~a~~~G~~~vmv~~~--------~~--G~----------~al~~L~~~~~l~iha-Hra~~ga~~r~~~~Gis~----~v 302 (424)
T cd08208 248 VAVRNGANALLINAM--------PV--GL----------SAVRMLRKHAQVPLIA-HFPFIASFSRLEKYGIHS----RV 302 (424)
T ss_pred HHHHhCCCEEEEeee--------cc--cH----------HHHHHHHhcCCCeEEe-ccCccccccCCCCCCCcH----HH
Confidence 999999998888741 12 31 2345555555666643 2332211 1122 12
Q ss_pred HHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHH----hhC---C-CCeEEEecCCCCHHHHHHHHH-c
Q 017176 158 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL----RDF---P-DLTFTLNGGINTVDEVNAALR-K 228 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~----~~~---~-~ipVi~nGgI~s~~da~~~l~-~ 228 (376)
+.+++.-+|+|.+++.+- .|... .. .+.+.++. +.. + -+| +.+||+ ++..+.+.++ .
T Consensus 303 l~Kl~RLaGaD~ih~~~~----gg~~~-----~~---~~~~~~~~~~~~~~~~~~k~~~P-v~SGG~-~~~~~p~~~~~~ 368 (424)
T cd08208 303 MTKLQRLAGLDVVIMPGF----GPRMM-----TP---EEEVLECVIACLEPMGPIKPCLP-VPGGSD-SALTLQTVYEKV 368 (424)
T ss_pred HHHHHHHcCCCeeeccCC----CCCcc-----ch---HHHHHHHHHHHhCcccCCCCceE-ecccCC-CHhHHHHHHHHh
Confidence 466666799999886431 11100 00 12222221 111 1 134 456777 6777888887 8
Q ss_pred C-cCee-EEchHHhhCCchh
Q 017176 229 G-AHHV-MVGRAAYQNPWYT 246 (376)
Q Consensus 229 G-ad~V-miGRa~l~~P~lf 246 (376)
| .|.| ++|-|+++.||=.
T Consensus 369 G~~Dvil~~GGGi~gHP~G~ 388 (424)
T cd08208 369 GNVDFGFVPGRGVFGHPMGP 388 (424)
T ss_pred CCCCEEEecCccccCCCCCh
Confidence 8 5876 7999999999964
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown. |
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=90.58 E-value=16 Score=34.63 Aligned_cols=156 Identities=17% Similarity=0.122 Sum_probs=90.2
Q ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEE
Q 017176 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 140 (376)
Q Consensus 61 ~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vK 140 (376)
.....|+++++.+.+.++..+-|+.++++|+|+|-+-. |.. |. ...+.+.+-.+.|.+.+++|+.+-
T Consensus 66 ~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~--P~~-------~~----~~~~~l~~~~~~ia~~~~~pi~lY 132 (284)
T cd00950 66 VNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVT--PYY-------NK----PSQEGLYAHFKAIAEATDLPVILY 132 (284)
T ss_pred hCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEcc--ccc-------CC----CCHHHHHHHHHHHHhcCCCCEEEE
Confidence 34567899999999999999999999999999998852 321 11 234667788888877788999876
Q ss_pred ecCCCCCC-ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCCCC
Q 017176 141 CRIGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINT 218 (376)
Q Consensus 141 iR~g~~~~-~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI~s 218 (376)
--++.... -+.+ + +.++.+.-.+..|-.+.. +...+.++.+... ++.| ..|. +
T Consensus 133 n~P~~~g~~ls~~-~---~~~L~~~p~v~giK~s~~------------------~~~~~~~~~~~~~~~~~v-~~G~--d 187 (284)
T cd00950 133 NVPGRTGVNIEPE-T---VLRLAEHPNIVGIKEATG------------------DLDRVSELIALCPDDFAV-LSGD--D 187 (284)
T ss_pred EChhHhCCCCCHH-H---HHHHhcCCCEEEEEECCC------------------CHHHHHHHHHhCCCCeEE-EeCC--h
Confidence 43321111 1222 2 233433222333332211 1233344444332 4433 3442 1
Q ss_pred HHHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhC
Q 017176 219 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256 (376)
Q Consensus 219 ~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 256 (376)
..+...+..|++|.+.|.+-+ -|.++.+.++....|
T Consensus 188 -~~~~~~~~~G~~G~~s~~~n~-~p~~~~~~~~~~~~g 223 (284)
T cd00950 188 -ALTLPFLALGGVGVISVAANV-APKLMAEMVRAALAG 223 (284)
T ss_pred -HhHHHHHHCCCCEEEehHHHh-hHHHHHHHHHHHHCC
Confidence 234455678999999988853 356544444433334
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=90.54 E-value=6.8 Score=37.33 Aligned_cols=126 Identities=16% Similarity=0.137 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 152 (376)
|.+.+.+-++.+.+.|.++|=+|.. +|+ +.+| ..+.=.++++.+++.+ ++||.+-+ .. .+++
T Consensus 20 D~~~l~~~i~~l~~~Gv~gi~~~Gs--------~GE-~~~l--s~~Er~~~~~~~~~~~~~~~~vi~gv----~~-~~~~ 83 (292)
T PRK03170 20 DFAALRKLVDYLIANGTDGLVVVGT--------TGE-SPTL--THEEHEELIRAVVEAVNGRVPVIAGT----GS-NSTA 83 (292)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCc--------CCc-cccC--CHHHHHHHHHHHHHHhCCCCcEEeec----CC-chHH
Confidence 6788899999999999999988642 233 2222 2333344444444433 36776533 22 2345
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE------ecCCCCHHHHHHHH
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAAL 226 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~------nGgI~s~~da~~~l 226 (376)
+.++. ++.+++.|+|++.+..-. +...+ ...-.+++.++.+.. ++||+. .|--.+++.+.++.
T Consensus 84 ~~i~~-a~~a~~~G~d~v~~~pP~--~~~~~-------~~~i~~~~~~ia~~~-~~pv~lYn~P~~~g~~l~~~~~~~L~ 152 (292)
T PRK03170 84 EAIEL-TKFAEKAGADGALVVTPY--YNKPT-------QEGLYQHFKAIAEAT-DLPIILYNVPGRTGVDILPETVARLA 152 (292)
T ss_pred HHHHH-HHHHHHcCCCEEEECCCc--CCCCC-------HHHHHHHHHHHHhcC-CCCEEEEECccccCCCCCHHHHHHHH
Confidence 55554 456678999999986422 11110 011145666666654 788762 35556777777765
Q ss_pred H
Q 017176 227 R 227 (376)
Q Consensus 227 ~ 227 (376)
+
T Consensus 153 ~ 153 (292)
T PRK03170 153 E 153 (292)
T ss_pred c
Confidence 4
|
|
| >PRK01060 endonuclease IV; Provisional | Back alignment and domain information |
|---|
Probab=90.48 E-value=8.5 Score=36.17 Aligned_cols=88 Identities=13% Similarity=0.120 Sum_probs=50.8
Q ss_pred HHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCcc---EEEEe----cCCCCCCc--
Q 017176 79 LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP---VSVKC----RIGVDDHD-- 149 (376)
Q Consensus 79 ~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~p---v~vKi----R~g~~~~~-- 149 (376)
+.++.+.+.+.|||+|||..++|.... . .. ..++.+.++-+.+.+ .++. +++-. ++.-.+..
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~-~-~~------~~~~~~~~lk~~~~~-~gl~~~~~~~h~~~~~nl~~~d~~~r 84 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWK-R-KP------LEELNIEAFKAACEK-YGISPEDILVHAPYLINLGNPNKEIL 84 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCc-C-CC------CCHHHHHHHHHHHHH-cCCCCCceEEecceEecCCCCCHHHH
Confidence 778999999999999999999886421 1 11 244455554444432 2333 44322 22222211
Q ss_pred --cHHHHHHHHHHHhhcCCccEEEEccCc
Q 017176 150 --SYNQLCDFIYKVSSLSPTRHFIIHSRK 176 (376)
Q Consensus 150 --~~~~~~~~i~~~~e~~Gvd~I~vh~r~ 176 (376)
+++.+.+. ..++.+.|+..|++|++.
T Consensus 85 ~~s~~~~~~~-i~~A~~lga~~vv~h~G~ 112 (281)
T PRK01060 85 EKSRDFLIQE-IERCAALGAKLLVFHPGS 112 (281)
T ss_pred HHHHHHHHHH-HHHHHHcCCCEEEEcCCc
Confidence 12233332 334567899999999764
|
|
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=90.46 E-value=6 Score=37.62 Aligned_cols=126 Identities=15% Similarity=0.168 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 152 (376)
|.+.+.+-++.+.+.|.++|=++.. +|+ +-+| ..+.=.++++.+.+.+ .+||.+-+ .. .+++
T Consensus 17 D~~~~~~~i~~l~~~Gv~Gi~~~Gs--------tGE-~~~L--s~~Er~~~~~~~~~~~~~~~~vi~gv----~~-~s~~ 80 (285)
T TIGR00674 17 DFAALEKLIDFQIENGTDAIVVVGT--------TGE-SPTL--SHEEHKKVIEFVVDLVNGRVPVIAGT----GS-NATE 80 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc--------Ccc-cccC--CHHHHHHHHHHHHHHhCCCCeEEEeC----CC-ccHH
Confidence 6788888889888999999987642 233 3222 2333334444444333 36777643 22 3455
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE------ecCCCCHHHHHHHH
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAAL 226 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~------nGgI~s~~da~~~l 226 (376)
+.++. ++.+++.|+|++.+..-. +...+ + ..-++++.++.+.. ++||+. .|--.+++.+.++.
T Consensus 81 ~~i~~-a~~a~~~Gad~v~v~pP~--y~~~~--~-----~~i~~~~~~i~~~~-~~pi~lYn~P~~tg~~l~~~~l~~L~ 149 (285)
T TIGR00674 81 EAISL-TKFAEDVGADGFLVVTPY--YNKPT--Q-----EGLYQHFKAIAEEV-DLPIILYNVPSRTGVSLYPETVKRLA 149 (285)
T ss_pred HHHHH-HHHHHHcCCCEEEEcCCc--CCCCC--H-----HHHHHHHHHHHhcC-CCCEEEEECcHHhcCCCCHHHHHHHH
Confidence 66654 456678999999987522 11111 0 11145666776654 788862 35566777777776
Q ss_pred H
Q 017176 227 R 227 (376)
Q Consensus 227 ~ 227 (376)
+
T Consensus 150 ~ 150 (285)
T TIGR00674 150 E 150 (285)
T ss_pred c
Confidence 5
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >PRK11572 copper homeostasis protein CutC; Provisional | Back alignment and domain information |
|---|
Probab=90.43 E-value=6.4 Score=36.78 Aligned_cols=77 Identities=14% Similarity=0.101 Sum_probs=45.6
Q ss_pred HHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCC----CccHHHHHHH
Q 017176 82 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD----HDSYNQLCDF 157 (376)
Q Consensus 82 aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~----~~~~~~~~~~ 157 (376)
.|..+++.|+|-|||+.+-.. | .+--....+. .+++.+++||.|=||+-..+ ..+++.+.+.
T Consensus 13 ~a~~A~~~GAdRiELc~~L~~---------G-GlTPS~g~i~----~~~~~~~ipv~vMIRPR~gdF~Ys~~E~~~M~~d 78 (248)
T PRK11572 13 CALTAQQAGADRIELCAAPKE---------G-GLTPSLGVLK----SVRERVTIPVHPIIRPRGGDFCYSDGEFAAMLED 78 (248)
T ss_pred HHHHHHHcCCCEEEEccCcCC---------C-CcCCCHHHHH----HHHHhcCCCeEEEEecCCCCCCCCHHHHHHHHHH
Confidence 456678899999999643111 1 1223333444 44455678888888773222 1345555555
Q ss_pred HHHHhhcCCccEEEEc
Q 017176 158 IYKVSSLSPTRHFIIH 173 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh 173 (376)
+. .+.+.|+|.+.+-
T Consensus 79 i~-~~~~~GadGvV~G 93 (248)
T PRK11572 79 IA-TVRELGFPGLVTG 93 (248)
T ss_pred HH-HHHHcCCCEEEEe
Confidence 44 4567999998863
|
|
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=90.36 E-value=2.8 Score=37.36 Aligned_cols=69 Identities=20% Similarity=0.223 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCc
Q 017176 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGA 230 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Ga 230 (376)
.++....+. .+.+.|++.|.+.-++.. ..+.+..+++.+++ ..|+.|.|.+.+++..+++.||
T Consensus 15 ~~~~~~~~~-~l~~~G~~~vev~~~~~~---------------~~~~i~~l~~~~~~-~~iGag~v~~~~~~~~a~~~Ga 77 (190)
T cd00452 15 AEDALALAE-ALIEGGIRAIEITLRTPG---------------ALEAIRALRKEFPE-ALIGAGTVLTPEQADAAIAAGA 77 (190)
T ss_pred HHHHHHHHH-HHHHCCCCEEEEeCCChh---------------HHHHHHHHHHHCCC-CEEEEEeCCCHHHHHHHHHcCC
Confidence 334444333 344799999998754321 14567777777654 4689999999999999999999
Q ss_pred CeeEEc
Q 017176 231 HHVMVG 236 (376)
Q Consensus 231 d~VmiG 236 (376)
|+++.+
T Consensus 78 ~~i~~p 83 (190)
T cd00452 78 QFIVSP 83 (190)
T ss_pred CEEEcC
Confidence 999876
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=90.36 E-value=5.9 Score=38.77 Aligned_cols=165 Identities=10% Similarity=0.162 Sum_probs=77.2
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCC-------CCCccccCCCCccccccCCHH----HHHHHHHHHhc-
Q 017176 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCG-------CPSPKVAGHGCFGVSLMLDPK----FVGEAMSVIAA- 131 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~g-------cP~~~v~r~g~yG~~l~~~~~----~~~eiv~~v~~- 131 (376)
..|+++ ++..+...+..+.+.++||.+|++--= -|.+.+.+.-+ ..+++|..- -+...++.+++
T Consensus 56 ~NPi~l---AsG~~~~~~~~~~~~~~G~Gavv~kTvt~~p~~gn~~Pr~~~~~~-~~~~iN~~Gl~n~G~~~~l~~i~~~ 131 (335)
T TIGR01036 56 PNPLGL---AAGFDKDGEAIDALGAMGFGFLEIGTVTPKPQPGNPRPRLFRLIE-DEALINRMGFNNHGADVLVERLKRA 131 (335)
T ss_pred CCCcEe---CCccCCCHHHHHHHHhcCCCEEEeCCcCCCCCCCCCCCCEEECcc-ccccccCCCCCChhHHHHHHHHhhc
Confidence 345655 222345566777778889999998543 33333222211 122333221 23444444443
Q ss_pred ccCccEEEEecCC--CCCCccHHHHHHHHHHHhhcCCccEEEE--ccCccccCCCCCCCCCCCCcccHHHHHHHHhhC--
Q 017176 132 NTNVPVSVKCRIG--VDDHDSYNQLCDFIYKVSSLSPTRHFII--HSRKALLNGISPAENRTIPPLKYEYYYALLRDF-- 205 (376)
Q Consensus 132 ~~~~pv~vKiR~g--~~~~~~~~~~~~~i~~~~e~~Gvd~I~v--h~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-- 205 (376)
..+.|+.|-+... .......+|.++.+.++ .+ .+|+|.+ ++-.. .|.... ..+....+.+..+++..
T Consensus 132 ~~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~-~~-~ad~iElNlScPn~--~~~~~~---~~~~~~~~i~~~V~~~~~~ 204 (335)
T TIGR01036 132 RYKGPIGINIGKNKDTPSEDAKEDYAACLRKL-GP-LADYLVVNVSSPNT--PGLRDL---QYKAELRDLLTAVKQEQDG 204 (335)
T ss_pred cCCCcEEEEEeCCCCCCcccCHHHHHHHHHHH-hh-hCCEEEEEccCCCC--CCcccc---cCHHHHHHHHHHHHHHHHh
Confidence 2345666655322 11122345555444333 22 4899887 33221 121110 11111123344443332
Q ss_pred ----CCCeEEE--ecCCC--CHHHHHHHH-HcCcCeeEEchHH
Q 017176 206 ----PDLTFTL--NGGIN--TVDEVNAAL-RKGAHHVMVGRAA 239 (376)
Q Consensus 206 ----~~ipVi~--nGgI~--s~~da~~~l-~~Gad~VmiGRa~ 239 (376)
.++||++ .-++. +..++.+++ +.|+|||.+---+
T Consensus 205 ~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~ 247 (335)
T TIGR01036 205 LRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTT 247 (335)
T ss_pred hhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCC
Confidence 1388875 34444 345555544 4899999875433
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=90.25 E-value=10 Score=35.49 Aligned_cols=99 Identities=15% Similarity=0.167 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC---------CC-
Q 017176 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI---------GV- 145 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~---------g~- 145 (376)
.+.+..|++.+++.|+|.|-+- || ..+.++++.+.+. ++||.--+-+ |+
T Consensus 93 ~~a~~nA~r~~ke~gA~aVKlE--------------GG------~~~~~~i~~L~~~-gIPV~gHiGLtPQ~v~~~GGyk 151 (268)
T COG0413 93 EQALKNAARLMKEAGADAVKLE--------------GG------EEMAETIKRLTER-GIPVMGHIGLTPQSVNWLGGYK 151 (268)
T ss_pred HHHHHHHHHHHHHhCCCEEEEc--------------CC------HHHHHHHHHHHHc-CCceEEEecCChhhhhccCCee
Confidence 4556667777888999999663 22 3455666666543 6787655433 11
Q ss_pred ---CCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecC
Q 017176 146 ---DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 215 (376)
Q Consensus 146 ---~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGg 215 (376)
.+.++.+++++. ++.++++|+-.+.+.+-. -+...++.+. .+||+|+-|-
T Consensus 152 vqGr~~~~a~~l~~d-A~ale~AGaf~ivlE~Vp------------------~~lA~~IT~~-lsiPtIGIGA 204 (268)
T COG0413 152 VQGRTEESAEKLLED-AKALEEAGAFALVLECVP------------------AELAKEITEK-LSIPTIGIGA 204 (268)
T ss_pred eecCCHHHHHHHHHH-HHHHHhcCceEEEEeccH------------------HHHHHHHHhc-CCCCEEeecC
Confidence 111234444443 456789999988876521 1223344444 5899998773
|
|
| >TIGR03849 arch_ComA phosphosulfolactate synthase | Back alignment and domain information |
|---|
Probab=90.23 E-value=7.7 Score=36.01 Aligned_cols=83 Identities=11% Similarity=0.130 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCC-----CccH
Q 017176 77 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD-----HDSY 151 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~-----~~~~ 151 (376)
..|.+..+.+++.|||.|||+-|.=. -..+.-.++++.+++. -+.||.-.|..+ ..+.
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEiS~G~~~--------------i~~~~~~rlI~~~~~~---g~~v~~EvG~K~~~~~~~~~~ 133 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEISDGSME--------------ISLEERCNLIERAKDN---GFMVLSEVGKKSPEKDSELTP 133 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEEcCCccC--------------CCHHHHHHHHHHHHhC---CCeEeccccccCCcccccCCH
Confidence 45666777899999999999865321 1223445556655542 223333333222 1345
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCcc
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIHSRKA 177 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~ 177 (376)
.+.++.+.+-+ ++|+++|++-+|..
T Consensus 134 ~~~i~~~~~~L-eAGA~~ViiEarEs 158 (237)
T TIGR03849 134 DDRIKLINKDL-EAGADYVIIEGRES 158 (237)
T ss_pred HHHHHHHHHHH-HCCCcEEEEeehhc
Confidence 56666555445 59999999999864
|
This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679. |
| >PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family | Back alignment and domain information |
|---|
Probab=90.22 E-value=0.18 Score=44.60 Aligned_cols=61 Identities=18% Similarity=0.181 Sum_probs=39.1
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHh
Q 017176 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l 240 (376)
+++...|+|.+=++.. ...+.++.++ .++|||+.|=|.+.+|+.++++.||++|.-..--|
T Consensus 113 i~~~~PD~vEilPg~~-----------------p~vi~~i~~~-~~~PiIAGGLI~~~e~v~~al~aGa~aVSTS~~~L 173 (175)
T PF04309_consen 113 IEQSKPDAVEILPGVM-----------------PKVIKKIREE-TNIPIIAGGLIRTKEDVEEALKAGADAVSTSNKEL 173 (175)
T ss_dssp HHHHT-SEEEEESCCH-----------------HHHHCCCCCC-CSS-EEEESS--SHHHHHHHCCTTCEEEEE--HHH
T ss_pred HhhcCCCEEEEchHHH-----------------HHHHHHHHHh-cCCCEEeecccCCHHHHHHHHHcCCEEEEcCChHh
Confidence 4567788888766521 1222233333 48999999999999999999999999998765433
|
Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G. |
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=90.16 E-value=17 Score=34.46 Aligned_cols=154 Identities=14% Similarity=0.111 Sum_probs=89.5
Q ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEE
Q 017176 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 140 (376)
Q Consensus 61 ~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vK 140 (376)
.....|+++++.+.+.++..+.|+.++++|+|+|-+-. |.. .. ...+.+.+-.+.|.+.++.||.+-
T Consensus 64 ~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~p--P~y--------~~---~~~~~i~~~~~~i~~~~~~pi~lY 130 (285)
T TIGR00674 64 VNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVT--PYY--------NK---PTQEGLYQHFKAIAEEVDLPIILY 130 (285)
T ss_pred hCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcC--CcC--------CC---CCHHHHHHHHHHHHhcCCCCEEEE
Confidence 34567899999999999999999999999999998843 331 10 235677888888888888998775
Q ss_pred ecC---CCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCC
Q 017176 141 CRI---GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGI 216 (376)
Q Consensus 141 iR~---g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI 216 (376)
--+ |.+- +. ++ +.++.+.-.+-.|--+.+ +...+.++++..+ ++.|+.-.+
T Consensus 131 n~P~~tg~~l--~~-~~---l~~L~~~~~v~giK~s~~------------------d~~~~~~l~~~~~~~~~v~~G~d- 185 (285)
T TIGR00674 131 NVPSRTGVSL--YP-ET---VKRLAEEPNIVAIKEATG------------------NLERISEIKAIAPDDFVVLSGDD- 185 (285)
T ss_pred ECcHHhcCCC--CH-HH---HHHHHcCCCEEEEEeCCC------------------CHHHHHHHHHhcCCCeEEEECch-
Confidence 322 2221 22 22 233433222222221111 1333445544443 344433222
Q ss_pred CCHHHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhC
Q 017176 217 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256 (376)
Q Consensus 217 ~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 256 (376)
......+..|+||.+.|-+-+ -|.++.+.++....|
T Consensus 186 ---~~~~~~~~~G~~G~i~~~~~~-~P~~~~~l~~a~~~g 221 (285)
T TIGR00674 186 ---ALTLPMMALGGKGVISVTANV-APKLMKEMVNNALEG 221 (285)
T ss_pred ---HHHHHHHHcCCCEEEehHHHh-hHHHHHHHHHHHHcC
Confidence 334456678999999877753 355544444443344
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R | Back alignment and domain information |
|---|
Probab=90.14 E-value=15 Score=36.49 Aligned_cols=141 Identities=18% Similarity=0.140 Sum_probs=83.8
Q ss_pred CCCCEEEEec---CCCHHHHHHHHHHHHHCCCCEEEec--CCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCc--
Q 017176 63 EQHPIVLQIG---GSNLDNLAKATELANAYNYDEINLN--CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV-- 135 (376)
Q Consensus 63 ~~~p~~vQL~---g~~~~~~~~aa~~~~~~G~d~IeiN--~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~-- 135 (376)
.++|++.-+. |-+++.+++.+..+...|.|.|--+ .+.+. =..+..|.+.+.+.+++..+.++.
T Consensus 124 ~~rPl~~tiiKP~GL~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~---------~~p~~eRv~~v~~av~~a~~eTG~~~ 194 (364)
T cd08210 124 PERPLLCSALKPQGLSAAELAELAYAFALGGIDIIKDDHGLADQP---------FAPFEERVKACQEAVAEANAETGGRT 194 (364)
T ss_pred CCCceEEEEeccccCCHHHHHHHHHHHHhcCCCeeecCccccCcc---------CCCHHHHHHHHHHHHHHHHhhcCCcc
Confidence 4778776654 7799999999999999999999332 22221 122335666777777777766654
Q ss_pred cEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCC-CeEEEe-
Q 017176 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD-LTFTLN- 213 (376)
Q Consensus 136 pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~-ipVi~n- 213 (376)
++.+-+. . ...++.+. ++.++++|++++-|..-.. | +..+..+.++. . +||.+-
T Consensus 195 ~y~~Nit----a--~~~em~~r-a~~a~~~Ga~~vMv~~~~~---G-------------~~~~~~l~~~~-~~l~i~aHr 250 (364)
T cd08210 195 LYAPNVT----G--PPTQLLER-ARFAKEAGAGGVLIAPGLT---G-------------LDTFRELAEDF-DFLPILAHP 250 (364)
T ss_pred eEEEecC----C--CHHHHHHH-HHHHHHcCCCEEEeecccc---h-------------HHHHHHHHhcC-CCcEEEEcc
Confidence 4444322 2 13355554 3345679999988765431 1 34444555543 5 777654
Q ss_pred ---cCC------CCH-HHHHHHHH-cCcCeeEEc
Q 017176 214 ---GGI------NTV-DEVNAALR-KGAHHVMVG 236 (376)
Q Consensus 214 ---GgI------~s~-~da~~~l~-~Gad~VmiG 236 (376)
|-+ .+. --..++.+ .|+|.+.++
T Consensus 251 a~~ga~~~~~~~is~~~~~~kl~RlaGad~~~~~ 284 (364)
T cd08210 251 AFAGAFVSSGDGISHALLFGTLFRLAGADAVIFP 284 (364)
T ss_pred ccccccccCCCcccHHHHHHHHHHHhCCCEEEeC
Confidence 222 222 22445455 899987553
|
rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate. |
| >PLN02389 biotin synthase | Back alignment and domain information |
|---|
Probab=90.06 E-value=11 Score=37.60 Aligned_cols=146 Identities=13% Similarity=0.136 Sum_probs=72.9
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHH
Q 017176 80 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 159 (376)
Q Consensus 80 ~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~ 159 (376)
.+.++.++++|.|.+.+|+-. .+...++-.-+ .+.+...+.++.+++ .++++..-+=+|..+ +.++.++.+.
T Consensus 178 ~E~l~~LkeAGld~~~~~LeT-s~~~y~~i~~~----~s~e~rl~ti~~a~~-~Gi~v~sg~IiGlgE--t~edrv~~l~ 249 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNHNLDT-SREYYPNVITT----RSYDDRLETLEAVRE-AGISVCSGGIIGLGE--AEEDRVGLLH 249 (379)
T ss_pred HHHHHHHHHcCCCEEEeeecC-ChHHhCCcCCC----CCHHHHHHHHHHHHH-cCCeEeEEEEECCCC--CHHHHHHHHH
Confidence 356677888899988888764 12111111101 256666777777655 377777666667643 3344443332
Q ss_pred HHhhcC--CccEEEEccCccccCCCCCCCCCCCCccc-HHHHHH--HHh-hCCCCeE-EEecCCC-CHHHHHHHHHcCcC
Q 017176 160 KVSSLS--PTRHFIIHSRKALLNGISPAENRTIPPLK-YEYYYA--LLR-DFPDLTF-TLNGGIN-TVDEVNAALRKGAH 231 (376)
Q Consensus 160 ~~~e~~--Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~-~~~v~~--~~~-~~~~ipV-i~nGgI~-s~~da~~~l~~Gad 231 (376)
. +.+. ..+.+.++.-++. .|..-.+ .+++. .+.++- +.+ -.|+..+ +..|-+. ..+....++..||+
T Consensus 250 ~-Lr~L~~~~~~v~l~~l~P~-~GTpL~~---~~~~s~~e~lr~iAi~Rl~lP~~~i~i~~gr~~l~~~~~~~~l~~GAN 324 (379)
T PLN02389 250 T-LATLPEHPESVPINALVAV-KGTPLED---QKPVEIWEMVRMIATARIVMPKAMVRLSAGRVRFSMAEQALCFLAGAN 324 (379)
T ss_pred H-HHhcccCCcEEecccceec-CCCcCCC---CCCCCHHHHHHHHHHHHHHCCCccccccccccccChhHHHHHHHhCCC
Confidence 2 2223 4566655432221 1110000 11111 222221 112 1344333 4445443 44446777789999
Q ss_pred eeEEchH
Q 017176 232 HVMVGRA 238 (376)
Q Consensus 232 ~VmiGRa 238 (376)
.+|+|==
T Consensus 325 ~~~~g~~ 331 (379)
T PLN02389 325 SIFTGDK 331 (379)
T ss_pred EEEECCc
Confidence 9999854
|
|
| >COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.04 E-value=14 Score=34.43 Aligned_cols=35 Identities=14% Similarity=0.233 Sum_probs=27.2
Q ss_pred CCCEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecC
Q 017176 64 QHPIVLQIG-GSNLDNLAKATELANAYNYDEINLNC 98 (376)
Q Consensus 64 ~~p~~vQL~-g~~~~~~~~aa~~~~~~G~d~IeiN~ 98 (376)
.+++++-+- +--|.....+++.+.+.|+|.+.+|.
T Consensus 62 ~~~VflDlK~~DIpnT~~~~~~~~~~~g~d~vtvH~ 97 (240)
T COG0284 62 GKKVFLDLKLADIPNTVALAAKAAADLGADAVTVHA 97 (240)
T ss_pred CCceEEeeecccchHHHHHHHHHhhhcCCcEEEEeC
Confidence 346777764 44477888888889999999999983
|
|
| >TIGR00559 pdxJ pyridoxine 5'-phosphate synthase | Back alignment and domain information |
|---|
Probab=89.98 E-value=3.1 Score=38.49 Aligned_cols=147 Identities=13% Similarity=0.112 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHCCCCEEEecCC--------------------------C--------------------CCccc-cCCCC
Q 017176 78 NLAKATELANAYNYDEINLNCG--------------------------C--------------------PSPKV-AGHGC 110 (376)
Q Consensus 78 ~~~~aa~~~~~~G~d~IeiN~g--------------------------c--------------------P~~~v-~r~g~ 110 (376)
+..++|.+++++|+|+|-+|.- . |-+.- .-+++
T Consensus 22 d~v~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~l~~~~~~~lNlE~a~~~emi~ia~~vkP~~vtLVPEkr~ElTTeg 101 (237)
T TIGR00559 22 DPLRAALIAEQAGADGITVHLREDRRHIQDRDVYDLKEALTTPFNIEMAPTEEMIRIAEEIKPEQVTLVPEARDEVTTEG 101 (237)
T ss_pred CHHHHHHHHHHcCCCEEEecCCCCcCcCCHHHHHHHHHHcCCCEEeccCCCHHHHHHHHHcCCCEEEECCCCCCCccCCc
Confidence 4567888899999999988752 1 11111 12444
Q ss_pred ccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCC
Q 017176 111 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190 (376)
Q Consensus 111 yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~ 190 (376)
|-.+..+.+.+.++++.+++. ++.|++-+-+ +.+. ++ ...+.|+|.|.+|.+.-... ..... .
T Consensus 102 -Gldv~~~~~~l~~~i~~l~~~-gI~VSLFiDP------~~~q-i~----~A~~~GAd~VELhTG~YA~a-~~~~~---~ 164 (237)
T TIGR00559 102 -GLDVARLKDKLCELVKRFHAA-GIEVSLFIDA------DKDQ-IS----AAAEVGADRIEIHTGPYANA-YNKKE---M 164 (237)
T ss_pred -CchhhhCHHHHHHHHHHHHHC-CCEEEEEeCC------CHHH-HH----HHHHhCcCEEEEechhhhcC-CCchh---H
Confidence 667778889999999998753 6677664332 1222 22 23468999999997752111 00000 0
Q ss_pred CcccHHHHH---HHHhhCCCCeEEEecCCCCHHHHHHHHH-cC-cCeeEEchHHhhCCc
Q 017176 191 PPLKYEYYY---ALLRDFPDLTFTLNGGINTVDEVNAALR-KG-AHHVMVGRAAYQNPW 244 (376)
Q Consensus 191 ~~~~~~~v~---~~~~~~~~ipVi~nGgI~s~~da~~~l~-~G-ad~VmiGRa~l~~P~ 244 (376)
. --++.+. +...+. ++-|=+--|+ +.+.+..+.. .+ .+=|-||.+++.+--
T Consensus 165 ~-~el~~i~~aa~~A~~l-GL~VnAGHgL-ny~Nv~~i~~~~~~i~EvnIGHsiia~Al 220 (237)
T TIGR00559 165 A-EELQRIVKASVHAHSL-GLKVNAGHGL-NYHNVKYFAEILPYLDELNIGHAIIADAV 220 (237)
T ss_pred H-HHHHHHHHHHHHHHHc-CCEEecCCCC-CHHhHHHHHhCCCCceEEecCHHHHHHHH
Confidence 0 0022222 222222 5656555566 7777777766 45 888999999887654
|
PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate. |
| >COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.85 E-value=4 Score=38.30 Aligned_cols=117 Identities=18% Similarity=0.191 Sum_probs=66.1
Q ss_pred cccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCC
Q 017176 112 GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191 (376)
Q Consensus 112 G~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~ 191 (376)
|+..|++.+++.++ -..++||..|=-++ .+++|.+.. +...-..|-..|++--|.- +++ +.....
T Consensus 135 GARNMQNF~LLke~-----G~~~kPvLLKRg~~----aTieEwL~A-AEYI~s~GN~~vILCERGI--Rtf---e~~TRn 199 (286)
T COG2876 135 GARNMQNFALLKEV-----GRQNKPVLLKRGLS----ATIEEWLNA-AEYILSHGNGNVILCERGI--RTF---EKATRN 199 (286)
T ss_pred cccchhhhHHHHHh-----cccCCCeEEecCcc----ccHHHHHHH-HHHHHhCCCCcEEEEeccc--ccc---cccccc
Confidence 55666666665543 23578999985553 456666543 3333357777777754421 110 111222
Q ss_pred cccHHHHHHHHhhCCCCeEEEec----CCCCHH--HHHHHHHcCcCeeEEchHHhhCCchh
Q 017176 192 PLKYEYYYALLRDFPDLTFTLNG----GINTVD--EVNAALRKGAHHVMVGRAAYQNPWYT 246 (376)
Q Consensus 192 ~~~~~~v~~~~~~~~~ipVi~nG----gI~s~~--da~~~l~~Gad~VmiGRa~l~~P~lf 246 (376)
.++...+..+++. .++|||++= |=++.- -+..+++.|||++|+= ..-||.-.
T Consensus 200 tLDi~aV~~~kq~-THLPVivDpSH~~Grr~lv~pla~AA~AaGAdglmiE--VHp~P~~A 257 (286)
T COG2876 200 TLDISAVPILKQE-THLPVIVDPSHATGRRDLVEPLAKAAIAAGADGLMIE--VHPDPEKA 257 (286)
T ss_pred eechHHHHHHHhh-cCCCEEECCCCcccchhhHHHHHHHHHhccCCeeEEE--ecCCcccc
Confidence 3456666666554 599999862 222221 2445566899999983 44566643
|
|
| >TIGR00433 bioB biotin synthetase | Back alignment and domain information |
|---|
Probab=89.73 E-value=13 Score=35.30 Aligned_cols=144 Identities=15% Similarity=0.130 Sum_probs=74.4
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHH
Q 017176 80 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 159 (376)
Q Consensus 80 ~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~ 159 (376)
.+.++.++++|+|.|.++.- -.+.+.++-. + -.+.+...+.++.+++. ++++.+-+-+|..+ +.++..+.+.
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~-~---~~s~~~~~~ai~~l~~~-Gi~v~~~~i~Gl~e--t~~d~~~~~~ 194 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLD-TSQEFYSNII-S---THTYDDRVDTLENAKKA-GLKVCSGGIFGLGE--TVEDRIGLAL 194 (296)
T ss_pred HHHHHHHHHcCCCEEEEccc-CCHHHHhhcc-C---CCCHHHHHHHHHHHHHc-CCEEEEeEEEeCCC--CHHHHHHHHH
Confidence 35567888999999877654 2221111111 1 13456666777776653 77777666666633 4445554433
Q ss_pred HHhhcCCccEEEEccCccccCCCCCCCCCCCCcccH-H---HHHHHHhhCCCCeEEEecCCC-CHHHHH-H-HHHcCcCe
Q 017176 160 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY-E---YYYALLRDFPDLTFTLNGGIN-TVDEVN-A-ALRKGAHH 232 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~-~---~v~~~~~~~~~ipVi~nGgI~-s~~da~-~-~l~~Gad~ 232 (376)
.+.+.|++.+.+|.-... .|+.-.+ .++... + .+...+...|+..|...|+=. ...+.. . ++..||+.
T Consensus 195 -~l~~l~~~~i~l~~l~p~-~gT~l~~---~~~~s~~~~~~~ia~~r~~lp~~~i~~~~~~~~~~~~~~~~~~l~~G~n~ 269 (296)
T TIGR00433 195 -ALANLPPESVPINFLVKI-KGTPLAD---NKELSADDALKTIALARIIMPKAEIRLAGGREVNMRELQQAMCFMAGANS 269 (296)
T ss_pred -HHHhCCCCEEEeeeeEEc-CCCccCC---CCCCCHHHHHHHHHHHHHHCCcceEEEeCCcchhhhhhHHHHHHHhcCce
Confidence 334678998877754332 1211011 122222 2 233333334544454444432 222332 2 56789999
Q ss_pred eEEc
Q 017176 233 VMVG 236 (376)
Q Consensus 233 VmiG 236 (376)
+++|
T Consensus 270 i~~g 273 (296)
T TIGR00433 270 IFVG 273 (296)
T ss_pred EEEc
Confidence 9974
|
Catalyzes the last step of the biotin biosynthesis pathway. |
| >COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=89.70 E-value=15 Score=38.10 Aligned_cols=202 Identities=18% Similarity=0.223 Sum_probs=107.0
Q ss_pred ecCCcEEEccCCCCC-hHHHHHHHHHhCCCcEEEecce-----eecccccccchhhhhhccCCCCCCEEEEecCCCHHHH
Q 017176 6 YLPPWFSVAPMMDWT-DNHYRTLARLISKHAWLYTEML-----AAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNL 79 (376)
Q Consensus 6 ~l~nri~lAPM~~~t-d~~~r~~~~~~Gg~gl~~te~v-----~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~ 79 (376)
.-..|+++|-|.-.| |..|...+.++| . +.|+. +.+-+.. .+.++...-+.++-+.++..=-||--+
T Consensus 32 tGr~PillaGMTPtTVdp~ivAAaAnAG-h---waELAGGGq~t~e~~~~---~i~ql~~~lepG~t~qfN~ifldpylw 104 (717)
T COG4981 32 TGRSPILLAGMTPTTVDPDIVAAAANAG-H---WAELAGGGQVTEEIFTN---AIEQLVSLLEPGRTAQFNSIFLDPYLW 104 (717)
T ss_pred cCCCCeeecCCCCCcCCHHHHHHHhcCC-c---eeeecCCcccCHHHHHH---HHHHHHhccCCCccceeeEEEechHHh
Confidence 445789999997543 667766655544 2 22322 1111111 223333333445444444332333211
Q ss_pred H------HHHHHHHHCC--CCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccH
Q 017176 80 A------KATELANAYN--YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSY 151 (376)
Q Consensus 80 ~------~aa~~~~~~G--~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~ 151 (376)
. +..+.+...| .|+|-|..|-|.. +...|+++.+-. .++|..+ +.+| ++
T Consensus 105 ~~qig~krLv~kara~G~~I~gvvIsAGIP~l----------------e~A~ElI~~L~~-~G~~yv~-fKPG-----tI 161 (717)
T COG4981 105 KLQIGGKRLVQKARASGAPIDGVVISAGIPSL----------------EEAVELIEELGD-DGFPYVA-FKPG-----TI 161 (717)
T ss_pred hhcCChHHHHHHHHhcCCCcceEEEecCCCcH----------------HHHHHHHHHHhh-cCceeEE-ecCC-----cH
Confidence 1 2233333445 5888888877753 445566666532 2555432 2333 22
Q ss_pred HHHHHHHHHHhhcCCccEEEEc--cCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH--
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-- 227 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh--~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-- 227 (376)
+.+ +.+-+++.+..---|++| |+.+ +|+ ..|+....+-+.-..+++ ...+|-++.-|||-+++++...|.
T Consensus 162 eqI-~svi~IAka~P~~pIilq~egGra--GGH--HSweDld~llL~tYs~lR-~~~NIvl~vGgGiGtp~~aa~YLTGe 235 (717)
T COG4981 162 EQI-RSVIRIAKANPTFPIILQWEGGRA--GGH--HSWEDLDDLLLATYSELR-SRDNIVLCVGGGIGTPDDAAPYLTGE 235 (717)
T ss_pred HHH-HHHHHHHhcCCCCceEEEEecCcc--CCc--cchhhcccHHHHHHHHHh-cCCCEEEEecCCcCChhhcccccccc
Confidence 222 222334444554455555 4432 332 223333333333334554 456899999999999999998884
Q ss_pred ----cC-----cCeeEEchHHhhCC
Q 017176 228 ----KG-----AHHVMVGRAAYQNP 243 (376)
Q Consensus 228 ----~G-----ad~VmiGRa~l~~P 243 (376)
.| .||+.+|++++..-
T Consensus 236 WSt~~g~P~MP~DGiLvGtaaMatK 260 (717)
T COG4981 236 WSTAYGFPPMPFDGILVGTAAMATK 260 (717)
T ss_pred hhhhcCCCCCCcceeEechhHHhhh
Confidence 12 89999999999653
|
|
| >TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase | Back alignment and domain information |
|---|
Probab=89.63 E-value=11 Score=37.92 Aligned_cols=199 Identities=12% Similarity=0.061 Sum_probs=105.3
Q ss_pred cCCCCChHHHHHHH--HHhCCCcEEE-ecceeecccccccchhhhhhc-----cCCCC--CCEEEEecCCCHHHHHHHHH
Q 017176 15 PMMDWTDNHYRTLA--RLISKHAWLY-TEMLAAETIIYQQGNLDRFLA-----FSPEQ--HPIVLQIGGSNLDNLAKATE 84 (376)
Q Consensus 15 PM~~~td~~~r~~~--~~~Gg~gl~~-te~v~~~~~~~~~~~~~~~~~-----~~~~~--~p~~vQL~g~~~~~~~~aa~ 84 (376)
|-.|.+...++.++ ...||++++= -|.+....+..-.++.....+ ..+++ .-..++|.+.. +++.+-++
T Consensus 148 p~~Gl~~~~~A~~~y~~~~GGvD~IKDDE~l~dq~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~NiT~~~-~em~~ra~ 226 (407)
T TIGR03332 148 GMIGRDLGYLKEQLRQQALGGVDLVKDDEILFETGLAPFEKRITEGKEVLQEVYEQTGHKTLYAVNLTGRT-FDLKDKAK 226 (407)
T ss_pred CccCCCHHHHHHHHHHHhccCcccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCcceEeecCCCCH-HHHHHHHH
Confidence 56678888887765 4567888763 233222222111111111111 11223 33678888664 56999999
Q ss_pred HHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhc--ccCccEEEEecCCCCCC----c-cHHHHHHH
Q 017176 85 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA--NTNVPVSVKCRIGVDDH----D-SYNQLCDF 157 (376)
Q Consensus 85 ~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~--~~~~pv~vKiR~g~~~~----~-~~~~~~~~ 157 (376)
+++++|..++-+|.. ..+|. .++.+++ ..++|+ .-.|.++.-. . -+. ....
T Consensus 227 ~a~~~G~~~~mv~~~--------~~G~~------------~~~~l~~~~~~~lpi-haHra~~ga~~r~~~~Gis-~~~~ 284 (407)
T TIGR03332 227 RAAELGADVLLFNVF--------AYGLD------------VLQSLAEDDEIPVPI-MAHPAVSGAYTSSPFYGFS-HSLL 284 (407)
T ss_pred HHHHhCCCEEEEecc--------ccChH------------HHHHHHhcCCCCcEE-EEecCcccccccCCCCccc-HHHH
Confidence 999999999988741 12222 2344444 345666 3334433211 0 111 0113
Q ss_pred HHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC----CCeEEEecCCCCHHHHHHHHH-cCcCe
Q 017176 158 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP----DLTFTLNGGINTVDEVNAALR-KGAHH 232 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~----~ipVi~nGgI~s~~da~~~l~-~Gad~ 232 (376)
+.+++.-+|+|.+++.+-.....+. ..........+..... -.| +.+||+ ++..+.++++ .|-|.
T Consensus 285 l~kl~RLaGaD~~~~~~~~Gk~~~~--------~~~~~~~~~~~~~p~~~~k~~~P-v~sGG~-~~~~~p~~~~~~G~Dv 354 (407)
T TIGR03332 285 LGKLLRYAGADFSLFPSPYGSVALE--------REDALAISKELTEDDAPFKKTFA-VPSAGI-HPGMVPLIMRDFGIDH 354 (407)
T ss_pred HHHHHHhcCcCccccCCcccCCCCC--------HHHHHHHHHHHhccccCCCccEE-ecCCCc-ChhHHHHHHHHhCCce
Confidence 4566667899998875321111110 0000112222222111 134 456777 7888888888 89884
Q ss_pred -eEEchHHhhCCchh
Q 017176 233 -VMVGRAAYQNPWYT 246 (376)
Q Consensus 233 -VmiGRa~l~~P~lf 246 (376)
+++|-|+++.|+=.
T Consensus 355 il~~GGGi~gHP~G~ 369 (407)
T TIGR03332 355 IINAGGGIHGHPNGA 369 (407)
T ss_pred EEecCcccccCCCCc
Confidence 45789999999863
|
Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691). |
| >cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III | Back alignment and domain information |
|---|
Probab=89.61 E-value=11 Score=38.05 Aligned_cols=196 Identities=13% Similarity=0.117 Sum_probs=107.9
Q ss_pred cCCCCChHHHHHHH--HHhCCCcEEE-ecceeecccccccchhhhhhc-----cCCCC--CCEEEEecCCCHHHHHHHHH
Q 017176 15 PMMDWTDNHYRTLA--RLISKHAWLY-TEMLAAETIIYQQGNLDRFLA-----FSPEQ--HPIVLQIGGSNLDNLAKATE 84 (376)
Q Consensus 15 PM~~~td~~~r~~~--~~~Gg~gl~~-te~v~~~~~~~~~~~~~~~~~-----~~~~~--~p~~vQL~g~~~~~~~~aa~ 84 (376)
|-.|.|..++..++ ...||++++= -|.+....+..-.+......+ ..+++ .-..++|.+. .+++.+-++
T Consensus 140 P~~Glsp~~~a~~~y~~~~GGvD~iKDDE~l~~q~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~NiT~~-~~em~~ra~ 218 (412)
T cd08213 140 PKVGLSPEEHAEVAYEALVGGVDLVKDDENLTSQPFNRFEERAKESLKARDKAEAETGERKAYLANITAP-VREMERRAE 218 (412)
T ss_pred cccCCCHHHHHHHHHHHHhcCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEecCC-HHHHHHHHH
Confidence 76788999998876 4668888763 233332222221111111111 12223 3378898876 999999999
Q ss_pred HHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhc---ccCccEEEEecCCCCC-------CccHHHH
Q 017176 85 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA---NTNVPVSVKCRIGVDD-------HDSYNQL 154 (376)
Q Consensus 85 ~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~---~~~~pv~vKiR~g~~~-------~~~~~~~ 154 (376)
.+.++|.+.+-+|.. ..+|. .++.+++ ..++|+.. .|.++.- .-+.
T Consensus 219 ~a~e~G~~~~mv~~~--------~~G~~------------~l~~l~~~~~~~~l~iha-Hra~~ga~~r~~~~Gis~--- 274 (412)
T cd08213 219 LVADLGGKYVMIDVV--------VAGWS------------ALQYLRDLAEDYGLAIHA-HRAMHAAFTRNPRHGISM--- 274 (412)
T ss_pred HHHHhCCCeEEeecc--------ccChH------------HHHHHHHhccccCeEEEE-CCCcceecccCCcCcCcH---
Confidence 999999999888741 11222 2444444 33556544 2333211 1122
Q ss_pred HHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhh--------------C---C-CCeEEEecCC
Q 017176 155 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD--------------F---P-DLTFTLNGGI 216 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~--------------~---~-~ipVi~nGgI 216 (376)
..+.++..-+|+|.+++.+-.....+. . .-.......+... . . -.| +.+||+
T Consensus 275 -~~l~kl~RLaGaD~ih~~t~~Gk~~~~---~-----~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~k~~~P-v~sGG~ 344 (412)
T cd08213 275 -LVLAKLYRLIGVDQLHIGTAVGKMEGD---K-----EEVLRIADILREQKYKPDEEDFHLAQDWGGIKPVFP-VASGGL 344 (412)
T ss_pred -HHHHHHHHHcCCCccccCCccCCcCCC---H-----HHHHHHHHHHHhccccccchhccccCccccCCCceE-ecCCCC
Confidence 134666667999998775422111111 0 0001111122211 1 1 234 456776
Q ss_pred CCHHHHHHHHH-cCcCe-eEEchHHhhCCchh
Q 017176 217 NTVDEVNAALR-KGAHH-VMVGRAAYQNPWYT 246 (376)
Q Consensus 217 ~s~~da~~~l~-~Gad~-VmiGRa~l~~P~lf 246 (376)
++..+.++++ .|-|. +++|-|+++.|+=.
T Consensus 345 -~~~~~p~~~~~~G~Dvil~~GGGi~gHP~G~ 375 (412)
T cd08213 345 -HPGLVPDVIDILGKDIVIQVGGGVHGHPDGT 375 (412)
T ss_pred -ChhHHHHHHHHhCCceEEecCCceecCCCCc
Confidence 7888888888 89884 56889999999863
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits. |
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=89.54 E-value=9.5 Score=33.93 Aligned_cols=123 Identities=11% Similarity=0.100 Sum_probs=74.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcc-cCccEEEEecCCCCCCccH
Q 017176 73 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVSVKCRIGVDDHDSY 151 (376)
Q Consensus 73 g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~-~~~pv~vKiR~g~~~~~~~ 151 (376)
-.++++..+.++.+.+. ++.||++. |.. . .+| .+.++.+++. .+.|+.+-.... +...
T Consensus 9 ~~~~~~~~~~~~~l~~~-i~~ieig~--~~~--~---~~g----------~~~i~~i~~~~~~~~i~~~~~v~--~~~~- 67 (202)
T cd04726 9 LLDLEEALELAKKVPDG-VDIIEAGT--PLI--K---SEG----------MEAVRALREAFPDKIIVADLKTA--DAGA- 67 (202)
T ss_pred CCCHHHHHHHHHHhhhc-CCEEEcCC--HHH--H---HhC----------HHHHHHHHHHCCCCEEEEEEEec--cccH-
Confidence 34677888888888887 99999942 321 1 124 3566666664 467776632221 1111
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEe-cCCCCHHHHHHHHHcCc
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN-GGINTVDEVNAALRKGA 230 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~n-GgI~s~~da~~~l~~Ga 230 (376)
..+ +.+.++|+|.|++|+.... ...+.+.+..++. +++++.. =+..|+.++.+++..|+
T Consensus 68 -~~~----~~~~~aGad~i~~h~~~~~--------------~~~~~~i~~~~~~-g~~~~v~~~~~~t~~e~~~~~~~~~ 127 (202)
T cd04726 68 -LEA----EMAFKAGADIVTVLGAAPL--------------STIKKAVKAAKKY-GKEVQVDLIGVEDPEKRAKLLKLGV 127 (202)
T ss_pred -HHH----HHHHhcCCCEEEEEeeCCH--------------HHHHHHHHHHHHc-CCeEEEEEeCCCCHHHHHHHHHCCC
Confidence 111 2234799999999985310 0012222333343 6777664 77889999988777899
Q ss_pred CeeEEc
Q 017176 231 HHVMVG 236 (376)
Q Consensus 231 d~VmiG 236 (376)
|.|.++
T Consensus 128 d~v~~~ 133 (202)
T cd04726 128 DIVILH 133 (202)
T ss_pred CEEEEc
Confidence 999985
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >PRK01261 aroD 3-dehydroquinate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=89.52 E-value=17 Score=33.55 Aligned_cols=131 Identities=12% Similarity=0.043 Sum_probs=82.0
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017176 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 63 ~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
....+++.|.+.+.+++...++.+...|+|.||+=. |.+.. .+.+.+.++++.+++. +.|+.+-+|
T Consensus 19 ~~p~Icvpi~~~~~ee~~~~~~~~~~~~aDivE~Rl----------D~l~~---~~~~~~~~~~~~l~~~-~~p~I~T~R 84 (229)
T PRK01261 19 MQPIVVESIFFKDIKEMKERFKTKVLSDKNLYEIRF----------DLFHD---HSIESEPEIISALNEM-DIDYIFTYR 84 (229)
T ss_pred CCcEEEEEeCCCCHHHHHHHHHHhhcCCCCEEEEEe----------eccCC---CChHHHHHHHHHHhhc-CCCEEEEEc
Confidence 344578999999999999888888888999999943 33222 3455567777777654 789999889
Q ss_pred CCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHH
Q 017176 143 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 222 (376)
Q Consensus 143 ~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da 222 (376)
.+ ++ .++ +..+++ .++|++.|--... . . + . .+. .++.||.+=--.+.++.
T Consensus 85 ~~-~~----~~~---l~~a~~-~~~d~vDIEl~~~--~---------------~-~-~-~~~-~~~kvIvS~Htp~~eeL 134 (229)
T PRK01261 85 GV-DA----RKY---YETAID-KMPPAVDLDINLI--G---------------K-L-E-FRP-RNTMLMVSYHTNNSDNM 134 (229)
T ss_pred CC-CH----HHH---HHHHHh-hCCCEEEEEcccc--h---------------h-h-h-hhc-CCCeEEEEeCCCCHHHH
Confidence 54 21 122 233443 6789998753210 0 0 0 0 111 25667776665566665
Q ss_pred HHHH----HcCcCeeEEch
Q 017176 223 NAAL----RKGAHHVMVGR 237 (376)
Q Consensus 223 ~~~l----~~Gad~VmiGR 237 (376)
.+.+ +.|||.+=++.
T Consensus 135 ~~~l~~m~~~gaDI~KiAv 153 (229)
T PRK01261 135 PAILDIMNEKNPDYVKVAC 153 (229)
T ss_pred HHHHHHHHHhCCCEEEEEe
Confidence 4444 25777666655
|
|
| >PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF | Back alignment and domain information |
|---|
Probab=89.49 E-value=12 Score=33.85 Aligned_cols=127 Identities=18% Similarity=0.179 Sum_probs=67.2
Q ss_pred HHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCC----CccHHHHHHH
Q 017176 82 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD----HDSYNQLCDF 157 (376)
Q Consensus 82 aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~----~~~~~~~~~~ 157 (376)
.+..+++.|+|-|||+.+ . ..| | +--... .++.+++.+++|+-|=||+--.+ ..+++.+.+.
T Consensus 12 ~a~~A~~~GAdRiELc~~---l---~~G--G--lTPS~g----~i~~~~~~~~ipv~vMIRpr~gdF~Ys~~E~~~M~~d 77 (201)
T PF03932_consen 12 DALAAEAGGADRIELCSN---L---EVG--G--LTPSLG----LIRQAREAVDIPVHVMIRPRGGDFVYSDEEIEIMKED 77 (201)
T ss_dssp HHHHHHHTT-SEEEEEBT---G---GGT-----B---HH----HHHHHHHHTTSEEEEE--SSSS-S---HHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEECCC---c---cCC--C--cCcCHH----HHHHHHhhcCCceEEEECCCCCCccCCHHHHHHHHHH
Confidence 456677899999999752 1 111 2 222233 44445556778988888873222 1345555555
Q ss_pred HHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEec---CCCCHHHHHHHHH-cCcCee
Q 017176 158 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG---GINTVDEVNAALR-KGAHHV 233 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nG---gI~s~~da~~~l~-~Gad~V 233 (376)
+. .+.+.|+|.+.+-.=+. .| .++.+.+.++++...+.|+...= -+.++..+.+.+. .|++.|
T Consensus 78 I~-~~~~~GadG~VfG~L~~--dg----------~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~lG~~rV 144 (201)
T PF03932_consen 78 IR-MLRELGADGFVFGALTE--DG----------EIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIELGFDRV 144 (201)
T ss_dssp HH-HHHHTT-SEEEE--BET--TS----------SB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHHHT-SEE
T ss_pred HH-HHHHcCCCeeEEEeECC--CC----------CcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHhcCCCEE
Confidence 54 34579999988643221 11 13456666666655578887653 3555666555553 788877
Q ss_pred EE
Q 017176 234 MV 235 (376)
Q Consensus 234 mi 235 (376)
.=
T Consensus 145 LT 146 (201)
T PF03932_consen 145 LT 146 (201)
T ss_dssp EE
T ss_pred EC
Confidence 64
|
A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B. |
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=89.47 E-value=5 Score=39.78 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=36.2
Q ss_pred CcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017176 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 191 ~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
+.++|+.+..+++. .++|||+ .||.+++|+..+.+.|+|+|.+.
T Consensus 208 ~~~tW~~i~~lr~~-~~~Pviv-KgV~~~~dA~~a~~~GvD~I~vs 251 (364)
T PLN02535 208 ASLSWKDIEWLRSI-TNLPILI-KGVLTREDAIKAVEVGVAGIIVS 251 (364)
T ss_pred CCCCHHHHHHHHhc-cCCCEEE-ecCCCHHHHHHHHhcCCCEEEEe
Confidence 45679988888775 4889665 67799999999999999999874
|
|
| >cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase | Back alignment and domain information |
|---|
Probab=89.44 E-value=20 Score=35.85 Aligned_cols=197 Identities=12% Similarity=0.113 Sum_probs=107.3
Q ss_pred cCCCCChHHHHHHH--HHhCCCcEEE-ecceeecccccccchhhhhhc-----cCCCCC--CEEEEecCCCHHHHHHHHH
Q 017176 15 PMMDWTDNHYRTLA--RLISKHAWLY-TEMLAAETIIYQQGNLDRFLA-----FSPEQH--PIVLQIGGSNLDNLAKATE 84 (376)
Q Consensus 15 PM~~~td~~~r~~~--~~~Gg~gl~~-te~v~~~~~~~~~~~~~~~~~-----~~~~~~--p~~vQL~g~~~~~~~~aa~ 84 (376)
|-.|.|..++..++ ...||++++= -|.+....+..-.++.....+ ..+++. -..++|.+. .+++.+-++
T Consensus 133 P~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~a~~~a~~~a~~eTG~~~~ya~NiT~~-~~em~~ra~ 211 (391)
T cd08209 133 GVLGLDLDDLAEQLREQALGGVDLIKDDEILFDNPLAPALERIRACRPVLQEVYEQTGRRTLYAVNLTGP-VFTLKEKAR 211 (391)
T ss_pred cccCCCHHHHHHHHHHHHhCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCCC-HHHHHHHHH
Confidence 76788999998876 4668888763 223322222211111111111 112233 368999875 799999999
Q ss_pred HHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhc--ccCccEEEEecCCCCC-------CccHHHHH
Q 017176 85 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA--NTNVPVSVKCRIGVDD-------HDSYNQLC 155 (376)
Q Consensus 85 ~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~--~~~~pv~vKiR~g~~~-------~~~~~~~~ 155 (376)
++.++|.+++-+|. . . +|- ..++++++ ..++|+-. .|.++.- .-+..-
T Consensus 212 ~~~~~G~~~~mv~~---~-----~--~G~----------~~l~~l~~~~~~~lpIha-Hra~~ga~~~~~~~Gis~~~-- 268 (391)
T cd08209 212 RLVEAGANALLFNV---F-----A--YGL----------DVLEALASDPEINVPIFA-HPAFAGALYGSPDYGIAASV-- 268 (391)
T ss_pred HHHHhCCCEEEEec---c-----c--cch----------HHHHHHHhcCcCCcEEEe-cCCcccccccCCCCCCcHHH--
Confidence 99999999998874 1 1 231 22444444 34556543 2333221 011211
Q ss_pred HHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhh--C-CCCeEEEecCCCCHHHHHHHHH-cCcC
Q 017176 156 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD--F-PDLTFTLNGGINTVDEVNAALR-KGAH 231 (376)
Q Consensus 156 ~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~--~-~~ipVi~nGgI~s~~da~~~l~-~Gad 231 (376)
.+.++..-+|+|.+++.+-.....+ .. .-.......+.+. . +-.|| .+||+ ++..+.+.++ .|-|
T Consensus 269 -~l~kl~RLaGaD~~~~~~~~Gk~~~---~~-----~~~~~~~~~~~~~~~~k~~~Pv-~sgG~-~~g~vp~~~~~~G~D 337 (391)
T cd08209 269 -LLGTLMRLAGADAVLFPSPYGSVAL---SK-----EEALAIAEALRRGGAFKGVFPV-PSAGI-HPGLVPQLLRDFGTD 337 (391)
T ss_pred -HHHHHHHHcCCCccccCCccCCcCC---CH-----HHHHHHHHHHhCcCCCCCceEe-cCCCC-ChhHHHHHHHHhCCc
Confidence 2356666689999887542111111 00 0001111122111 1 12443 45666 7888888888 8988
Q ss_pred e-eEEchHHhhCCchh
Q 017176 232 H-VMVGRAAYQNPWYT 246 (376)
Q Consensus 232 ~-VmiGRa~l~~P~lf 246 (376)
. +++|-|+++.|+=.
T Consensus 338 vi~~~GGGi~gHp~G~ 353 (391)
T cd08209 338 VILNAGGGIHGHPDGA 353 (391)
T ss_pred eEEecCcceecCCCCc
Confidence 4 45788999999863
|
Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine. |
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=89.40 E-value=5.4 Score=38.97 Aligned_cols=100 Identities=13% Similarity=0.133 Sum_probs=61.2
Q ss_pred CCCCEEEEec-------CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCc
Q 017176 63 EQHPIVLQIG-------GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135 (376)
Q Consensus 63 ~~~p~~vQL~-------g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~ 135 (376)
.+-++.+=+. |.++++..+.++.++++|+|.|+++.|....... .+..-......+....+..+.+++.+++
T Consensus 215 ~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ik~~v~i 293 (338)
T cd04733 215 PGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAM-AGAKKESTIAREAYFLEFAEKIRKVTKT 293 (338)
T ss_pred CCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccc-cccccCCccccchhhHHHHHHHHHHcCC
Confidence 4456776664 5678888999999999999999999886432211 0000001112223345677788888899
Q ss_pred cEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEE
Q 017176 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII 172 (376)
Q Consensus 136 pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~v 172 (376)
||.+--++ .+.++. .+++++.++|.|.+
T Consensus 294 PVi~~G~i-----~t~~~a----~~~l~~g~aD~V~l 321 (338)
T cd04733 294 PLMVTGGF-----RTRAAM----EQALASGAVDGIGL 321 (338)
T ss_pred CEEEeCCC-----CCHHHH----HHHHHcCCCCeeee
Confidence 99874333 223332 33455667887664
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=89.35 E-value=25 Score=35.18 Aligned_cols=128 Identities=14% Similarity=0.119 Sum_probs=76.7
Q ss_pred HHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC-ccEEEEecCCCCCCccHHHHHHH
Q 017176 79 LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDF 157 (376)
Q Consensus 79 ~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~-~pv~vKiR~g~~~~~~~~~~~~~ 157 (376)
....++.+.+.|.|.+-|= |+ +||++.+..-++++++.-. .-.++-..++. ..+++-..++
T Consensus 100 Ve~Fv~ka~~nGidvfRiF-----------DA-----lND~RNl~~ai~a~kk~G~h~q~~i~YT~sP--vHt~e~yv~~ 161 (472)
T COG5016 100 VEKFVEKAAENGIDVFRIF-----------DA-----LNDVRNLKTAIKAAKKHGAHVQGTISYTTSP--VHTLEYYVEL 161 (472)
T ss_pred HHHHHHHHHhcCCcEEEec-----------hh-----ccchhHHHHHHHHHHhcCceeEEEEEeccCC--cccHHHHHHH
Confidence 3445677788898877551 32 6899999988888876421 12223223222 2344444443
Q ss_pred HHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCH---HHHHHHHHcCcCeeE
Q 017176 158 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV---DEVNAALRKGAHHVM 234 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~---~da~~~l~~Gad~Vm 234 (376)
++-+.+.|+|.|.+---.... .|...++.+..+++.+ ++||-.----.+. -...++++.|+|++=
T Consensus 162 -akel~~~g~DSIciKDmaGll----------tP~~ayelVk~iK~~~-~~pv~lHtH~TsG~a~m~ylkAvEAGvD~iD 229 (472)
T COG5016 162 -AKELLEMGVDSICIKDMAGLL----------TPYEAYELVKAIKKEL-PVPVELHTHATSGMAEMTYLKAVEAGVDGID 229 (472)
T ss_pred -HHHHHHcCCCEEEeecccccC----------ChHHHHHHHHHHHHhc-CCeeEEecccccchHHHHHHHHHHhCcchhh
Confidence 334457999999986433211 1223488898888876 6998764333332 334566678999765
Q ss_pred Ec
Q 017176 235 VG 236 (376)
Q Consensus 235 iG 236 (376)
-+
T Consensus 230 TA 231 (472)
T COG5016 230 TA 231 (472)
T ss_pred hh
Confidence 43
|
|
| >PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder | Back alignment and domain information |
|---|
Probab=89.23 E-value=2.1 Score=38.89 Aligned_cols=60 Identities=20% Similarity=0.209 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhc-ccCccEEEE
Q 017176 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-NTNVPVSVK 140 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~-~~~~pv~vK 140 (376)
.+...+.|+...+.|+|.||||+++-.+.. . ..+.....+.+..+++++++ ..++|+++-
T Consensus 18 ~~~a~~~a~~~~~~GAdiIDIg~~st~p~~----~-~v~~~eE~~rl~~~l~~i~~~~~~~plSID 78 (210)
T PF00809_consen 18 EDEAVKRAREQVEAGADIIDIGAESTRPGA----T-PVSEEEEMERLVPVLQAIREENPDVPLSID 78 (210)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEESSTSSTTS----S-SSHHHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHhcCCEEEecccccCCCC----C-cCCHHHHHHHHHHHHHHHhccCCCeEEEEE
Confidence 344555677777889999999987643321 1 22334566788888888886 568899984
|
It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B .... |
| >cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria | Back alignment and domain information |
|---|
Probab=89.17 E-value=20 Score=36.11 Aligned_cols=196 Identities=12% Similarity=0.131 Sum_probs=108.6
Q ss_pred cCCCCChHHHHHHH--HHhCCCcEEE-ecceeecccccccchhhhhhc-----cCCCCC--CEEEEecCCCHHHHHHHHH
Q 017176 15 PMMDWTDNHYRTLA--RLISKHAWLY-TEMLAAETIIYQQGNLDRFLA-----FSPEQH--PIVLQIGGSNLDNLAKATE 84 (376)
Q Consensus 15 PM~~~td~~~r~~~--~~~Gg~gl~~-te~v~~~~~~~~~~~~~~~~~-----~~~~~~--p~~vQL~g~~~~~~~~aa~ 84 (376)
|-.|.|..+++.++ ...||++++= -|.+....+..-.+......+ ..+.+. -..++|.+. ++++.+-++
T Consensus 152 P~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~~-~~em~~ra~ 230 (406)
T cd08207 152 PSVGLTPEETAALVRQLAAAGIDFIKDDELLANPPYSPLDERVRAVMRVINDHAQRTGRKVMYAFNITDD-IDEMRRNHD 230 (406)
T ss_pred cccCCCHHHHHHHHHHHHhCCCCcccccccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEEecCCC-HHHHHHHHH
Confidence 76788999998876 4567888763 222222222221111111111 112233 368999886 999999999
Q ss_pred HHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCC-------CccHHHHHHH
Q 017176 85 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD-------HDSYNQLCDF 157 (376)
Q Consensus 85 ~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~-------~~~~~~~~~~ 157 (376)
.+.++|.+++-+|.. ..+|. .++.+++..++|+.. .|.++.- .-+. ..
T Consensus 231 ~~~~~G~~~~mv~~~--------~~G~~------------~l~~l~~~~~l~Iha-Hra~~ga~~r~p~~Gis~----~v 285 (406)
T cd08207 231 LVVEAGGTCVMVSLN--------SVGLS------------GLAALRRHSQLPIHG-HRNGWGMLTRSPALGISF----QA 285 (406)
T ss_pred HHHHhCCCeEEEecc--------ccchH------------HHHHHHhcCCceEEE-CCCcceecccCCCCCCcH----HH
Confidence 999999999988752 12222 244555555667654 2333211 1122 12
Q ss_pred HHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC----C-CCeEEEecCCCCHHHHHHHHH-cC-c
Q 017176 158 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF----P-DLTFTLNGGINTVDEVNAALR-KG-A 230 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~----~-~ipVi~nGgI~s~~da~~~l~-~G-a 230 (376)
+.++..-+|+|.+++.+-.. .+...+ .-.......+.... . -.| +.+||+ ++..+.+.++ .| .
T Consensus 286 l~kl~RLaGaD~~~~~~~~G---kf~~~~-----~~~~~~~~~~~~p~~~~~k~~~P-v~sgG~-~~~~vp~~~~~~G~~ 355 (406)
T cd08207 286 YQKLWRLAGVDHLHVNGLAS---KFWESD-----DSVIESARACLTPLGGPDDAAMP-VFSSGQ-WGGQAPPTYRRLGSV 355 (406)
T ss_pred HHHHHHHcCCCccccCCCcC---CcCCCc-----HHHHHHHHHHhCchhccCCCeeE-eccCCC-CHhHHHHHHHHhCCC
Confidence 45666678999988754211 010000 00011112222211 1 234 355666 7888888887 88 5
Q ss_pred CeeE-EchHHhhCCchh
Q 017176 231 HHVM-VGRAAYQNPWYT 246 (376)
Q Consensus 231 d~Vm-iGRa~l~~P~lf 246 (376)
|.|. +|-|+++.|+=.
T Consensus 356 Dvi~~aGGGi~gHP~G~ 372 (406)
T cd08207 356 DLLYLAGGGIMAHPDGP 372 (406)
T ss_pred ceEEecCCceecCCCCc
Confidence 8665 499999999864
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown. |
| >PLN02460 indole-3-glycerol-phosphate synthase | Back alignment and domain information |
|---|
Probab=89.15 E-value=1.1 Score=43.80 Aligned_cols=76 Identities=13% Similarity=0.048 Sum_probs=59.5
Q ss_pred HHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEch
Q 017176 158 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGR 237 (376)
+++.+++.|+++|.|-.-....+|. ++.+.++++..+++||+---=|.++-++.++...|||+|.+==
T Consensus 144 iA~~Ye~~GA~aISVLTd~~~F~Gs------------~e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~GADAVLLIa 211 (338)
T PLN02460 144 IAQAYEKGGAACLSVLTDEKYFQGS------------FENLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKGADAILLIA 211 (338)
T ss_pred HHHHHHhCCCcEEEEecCcCcCCCC------------HHHHHHHHHcCCCCCEeeccccCCHHHHHHHHHcCCCcHHHHH
Confidence 3566788999999987655444442 6778777765359999999999999999999999999998876
Q ss_pred HHhhCCch
Q 017176 238 AAYQNPWY 245 (376)
Q Consensus 238 a~l~~P~l 245 (376)
++|.+-.+
T Consensus 212 aiL~~~~L 219 (338)
T PLN02460 212 AVLPDLDI 219 (338)
T ss_pred HhCCHHHH
Confidence 66655444
|
|
| >PRK07094 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=89.01 E-value=6.3 Score=38.09 Aligned_cols=139 Identities=14% Similarity=0.052 Sum_probs=71.7
Q ss_pred HHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHH
Q 017176 81 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 160 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~ 160 (376)
+.++.++++|+|.+.+++-...+.+.+. ++. -...+...+.++.+++. ++++..-+-+|... ++.++..+.+.
T Consensus 130 e~l~~Lk~aG~~~v~~glEs~~~~~~~~--i~~--~~s~~~~~~~i~~l~~~-Gi~v~~~~iiGlpg-et~ed~~~~l~- 202 (323)
T PRK07094 130 EEYKAWKEAGADRYLLRHETADKELYAK--LHP--GMSFENRIACLKDLKEL-GYEVGSGFMVGLPG-QTLEDLADDIL- 202 (323)
T ss_pred HHHHHHHHcCCCEEEeccccCCHHHHHH--hCC--CCCHHHHHHHHHHHHHc-CCeecceEEEECCC-CCHHHHHHHHH-
Confidence 3456778899999988876554332211 111 13455666667766653 66666666666533 33344443322
Q ss_pred HhhcCCccEEEEc-----cCccccCCCCCCCCCCCCccc----HHHHHHHHhhCCC--CeEEEecCCCCHHHHHHHHHcC
Q 017176 161 VSSLSPTRHFIIH-----SRKALLNGISPAENRTIPPLK----YEYYYALLRDFPD--LTFTLNGGINTVDEVNAALRKG 229 (376)
Q Consensus 161 ~~e~~Gvd~I~vh-----~r~~~~~g~~~~~~~~~~~~~----~~~v~~~~~~~~~--ipVi~nGgI~s~~da~~~l~~G 229 (376)
.+.+.+++.+.++ .+|..+.- ++.. +..++..+.-.++ |+..+.=+-..+.....++..|
T Consensus 203 ~l~~l~~~~v~~~~~~P~pgTpl~~~---------~~~~~~~~~~~~a~~R~~lp~~~i~~~~~~~~~~~~~~~~~l~~G 273 (323)
T PRK07094 203 FLKELDLDMIGIGPFIPHPDTPLKDE---------KGGSLELTLKVLALLRLLLPDANIPATTALGTLNPDGREKGLKAG 273 (323)
T ss_pred HHHhCCCCeeeeeccccCCCCCcccC---------CCCCHHHHHHHHHHHHHhCcCCCCcccCCccccCchhHHHHHHcC
Confidence 3345777776664 34433211 1111 1222222222344 5554321223344556778899
Q ss_pred cCeeEE
Q 017176 230 AHHVMV 235 (376)
Q Consensus 230 ad~Vmi 235 (376)
|+.+|.
T Consensus 274 an~~~~ 279 (323)
T PRK07094 274 ANVVMP 279 (323)
T ss_pred CceecC
Confidence 999985
|
|
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=89.00 E-value=14 Score=35.31 Aligned_cols=147 Identities=10% Similarity=0.064 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHCCCCEEEecCC-------CCCccccCCCCccccccCC-------HHHHHHHHHHHhcc---cCccEEEE
Q 017176 78 NLAKATELANAYNYDEINLNCG-------CPSPKVAGHGCFGVSLMLD-------PKFVGEAMSVIAAN---TNVPVSVK 140 (376)
Q Consensus 78 ~~~~aa~~~~~~G~d~IeiN~g-------cP~~~v~r~g~yG~~l~~~-------~~~~~eiv~~v~~~---~~~pv~vK 140 (376)
...+..+.+.+.|+-+|++..= -|.+...+. ..+++|. .+...+-++..++. .+.|+.+-
T Consensus 21 ~~~e~~~~~~~~G~Gavv~ktit~~~~~gn~~pr~~~~---~~~~~N~~G~~n~g~~~~~~~i~~~~~~~~~~~~pvivs 97 (294)
T cd04741 21 TTLEDLLELAASSTGAVTTRSSTLAGRPGNPEPRYYAF---PLGSINSLGLPNLGLDYYLEYIRTISDGLPGSAKPFFIS 97 (294)
T ss_pred CCHHHHHHHHHcCCcEEEeCcccCCCCCCCCCCcEEec---CccccccccCCCcCHHHHHHHHHHHhhhccccCCeEEEE
Confidence 3445566666789999988543 232222222 1223333 45555555555443 46788876
Q ss_pred ecCCCCCCccHHHHHHHHHHHhhcC--CccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE--ec--
Q 017176 141 CRIGVDDHDSYNQLCDFIYKVSSLS--PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL--NG-- 214 (376)
Q Consensus 141 iR~g~~~~~~~~~~~~~i~~~~e~~--Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~--nG-- 214 (376)
+--. .++.++.+.++.+.. |+|+|.+.-.-....+... ....+....+.+..+++. .++||++ .-
T Consensus 98 i~g~------~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~--~~~~~~~~~~i~~~v~~~-~~iPv~vKl~p~~ 168 (294)
T cd04741 98 VTGS------AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPP--PAYDFDATLEYLTAVKAA-YSIPVGVKTPPYT 168 (294)
T ss_pred CCCC------HHHHHHHHHHHHhhccccccEEEEECCCCCCCCccc--ccCCHHHHHHHHHHHHHh-cCCCEEEEeCCCC
Confidence 6422 234444444443333 7999998543322111110 000011112344444443 4788864 12
Q ss_pred CCCCHHHHHHHHH-c--CcCeeEEc
Q 017176 215 GINTVDEVNAALR-K--GAHHVMVG 236 (376)
Q Consensus 215 gI~s~~da~~~l~-~--Gad~VmiG 236 (376)
++.+..++.+.+. . |+|+|.+-
T Consensus 169 ~~~~~~~~a~~l~~~~~G~~gi~~~ 193 (294)
T cd04741 169 DPAQFDTLAEALNAFACPISFITAT 193 (294)
T ss_pred CHHHHHHHHHHHhccccCCcEEEEE
Confidence 2222333334343 5 89988863
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed | Back alignment and domain information |
|---|
Probab=88.99 E-value=23 Score=35.70 Aligned_cols=197 Identities=12% Similarity=0.055 Sum_probs=106.6
Q ss_pred cCCCCChHHHHHHH--HHhCCCcEEE-ecceeecccccccchhhhhhc-----cCCCC--CCEEEEecCCCHHHHHHHHH
Q 017176 15 PMMDWTDNHYRTLA--RLISKHAWLY-TEMLAAETIIYQQGNLDRFLA-----FSPEQ--HPIVLQIGGSNLDNLAKATE 84 (376)
Q Consensus 15 PM~~~td~~~r~~~--~~~Gg~gl~~-te~v~~~~~~~~~~~~~~~~~-----~~~~~--~p~~vQL~g~~~~~~~~aa~ 84 (376)
|-.|.|..++..++ ...||++++= -|.+....+..-.+......+ ..+++ .-..++|.+. .+++.+-++
T Consensus 143 P~~GLsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~~-~~em~~ra~ 221 (407)
T PRK09549 143 GVIGRDLDYLKEQLRDQALGGVDLVKDDEILFENALTPFEKRIVAGKEVLQEVYETTGHKTLYAVNLTGR-TFELKEKAK 221 (407)
T ss_pred CccCCCHHHHHHHHHHHHhcCCcceecCcCCCCCCCcCHHHHHHHHHHHHHHHHHhhCCcceEEEecCCC-HHHHHHHHH
Confidence 66788999998876 4668888763 223332222221111111111 11222 3467888876 578999999
Q ss_pred HHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhc--ccCccEEEEecCCCCC-------CccHHHHH
Q 017176 85 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA--NTNVPVSVKCRIGVDD-------HDSYNQLC 155 (376)
Q Consensus 85 ~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~--~~~~pv~vKiR~g~~~-------~~~~~~~~ 155 (376)
.+.++|...+-+|. . .. |- ..++.+++ ..++|+.. .|.++.- .-+..-
T Consensus 222 ~a~~~G~~~~m~~~---~-----~~--G~----------~al~~l~~~~~~~lpIha-Hra~~ga~~r~~~~Gis~~~-- 278 (407)
T PRK09549 222 RAAEAGADALLFNV---F-----AY--GL----------DVLQSLAEDPEIPVPIMA-HPAVSGAYTPSPLYGISSPL-- 278 (407)
T ss_pred HHHHcCCCeEEEec---c-----cc--ch----------HHHHHHHhcCCCCcEEEe-cCCcccccccCCCCcCcHHH--
Confidence 99999999998874 1 12 31 12344444 33556543 2332211 111211
Q ss_pred HHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC---CC-CeEEEecCCCCHHHHHHHHH-cCc
Q 017176 156 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF---PD-LTFTLNGGINTVDEVNAALR-KGA 230 (376)
Q Consensus 156 ~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~---~~-ipVi~nGgI~s~~da~~~l~-~Ga 230 (376)
.+.++..-+|+|.+++.+-.....+. ..........+.+.. .. .| +.+||+ ++..+.++++ .|-
T Consensus 279 -~l~kl~RLaGaD~~~~~~~~Gk~~~~--------~~~~~~~~~~~~~~~~~~k~~~P-v~sGG~-~~~~~p~~~~~~G~ 347 (407)
T PRK09549 279 -LLGKLLRYAGADFSLFPSPYGSVALE--------KEEALAIAKELTEDDDPFKRSFP-VPSAGI-HPGLVPLLIRDFGK 347 (407)
T ss_pred -HHHHHHHHcCCCccccCCCcCCcCCC--------HHHHHHHHHHHhccccCCCccEE-eecCCC-ChhHHHHHHHHhCC
Confidence 24556666899998765321111110 000012222222221 11 34 456777 7788888888 898
Q ss_pred Ce-eEEchHHhhCCchh
Q 017176 231 HH-VMVGRAAYQNPWYT 246 (376)
Q Consensus 231 d~-VmiGRa~l~~P~lf 246 (376)
|. +++|-|+++.|+=.
T Consensus 348 D~il~~GGgi~gHp~G~ 364 (407)
T PRK09549 348 DVVINAGGGIHGHPNGA 364 (407)
T ss_pred ceEEecCCceecCCCCc
Confidence 84 45899999999864
|
|
| >COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=88.96 E-value=1.3 Score=41.77 Aligned_cols=112 Identities=15% Similarity=0.202 Sum_probs=68.0
Q ss_pred CCCCccccccCCH--HHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCC
Q 017176 107 GHGCFGVSLMLDP--KFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 183 (376)
Q Consensus 107 r~g~yG~~l~~~~--~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~ 183 (376)
|-+-+-+-|.+|- ..+..+-++|++.- ..|.+.|+-.-. ++++++.+. + ++|+|.|-+...+.
T Consensus 154 R~gLsDavliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEv---esle~~~eA----l-~agaDiImLDNm~~------ 219 (280)
T COG0157 154 RFGLSDAVLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEV---ESLEEAEEA----L-EAGADIIMLDNMSP------ 219 (280)
T ss_pred cCCCcceEEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEc---CCHHHHHHH----H-HcCCCEEEecCCCH------
Confidence 4344344444433 33444444444332 245556655533 345554432 2 59999998876542
Q ss_pred CCCCCCCCcccHHHHHHHHh---hCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 184 PAENRTIPPLKYEYYYALLR---DFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 184 ~~~~~~~~~~~~~~v~~~~~---~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
+.+++.++ ...++-+=++||| +.+.+.+...+|+|.+.+|.--..-||+
T Consensus 220 ------------e~~~~av~~l~~~~~~~lEaSGgI-t~~ni~~yA~tGVD~IS~galths~~~l 271 (280)
T COG0157 220 ------------EELKEAVKLLGLAGRALLEASGGI-TLENIREYAETGVDVISVGALTHSAPAL 271 (280)
T ss_pred ------------HHHHHHHHHhccCCceEEEEeCCC-CHHHHHHHhhcCCCEEEeCccccCCccc
Confidence 22222222 2235667799999 8999999999999999999887777875
|
|
| >PRK11613 folP dihydropteroate synthase; Provisional | Back alignment and domain information |
|---|
Probab=88.73 E-value=2 Score=40.97 Aligned_cols=61 Identities=23% Similarity=0.168 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEE
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 140 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vK 140 (376)
+++...+-|+...+.|+|.|||++-+-.+ |.=.-+.....+.+..+|+++++..++|++|-
T Consensus 36 ~~~~a~~~a~~~~~~GAdIIDIGgeSTrP-----g~~~v~~eeE~~Rv~pvI~~l~~~~~~~ISID 96 (282)
T PRK11613 36 SLIDAVKHANLMINAGATIIDVGGESTRP-----GAAEVSVEEELDRVIPVVEAIAQRFEVWISVD 96 (282)
T ss_pred CHHHHHHHHHHHHHCCCcEEEECCCCCCC-----CCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 56666666777777899999998643221 11011122344567778888887778888773
|
|
| >PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=88.51 E-value=14 Score=33.61 Aligned_cols=125 Identities=18% Similarity=0.246 Sum_probs=73.4
Q ss_pred EEEecCCC-HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCC
Q 017176 68 VLQIGGSN-LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD 146 (376)
Q Consensus 68 ~vQL~g~~-~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~ 146 (376)
.++++|-. ++ -|+.+.++|+|.+=+.+..+++. | =+++.+.+|.+.+...+ .+|.|-..
T Consensus 4 ~vKICGi~~~e----da~~~~~~Gad~iGfI~~~~S~R------~-----V~~~~a~~i~~~~~~~i-~~VgVf~~---- 63 (210)
T PRK01222 4 RVKICGITTPE----DAEAAAELGADAIGFVFYPKSPR------Y-----VSPEQAAELAAALPPFV-KVVGVFVN---- 63 (210)
T ss_pred eEEECCCCcHH----HHHHHHHcCCCEEEEccCCCCCC------c-----CCHHHHHHHHHhCCCCC-CEEEEEeC----
Confidence 47888854 43 35566678999988865433321 1 24677888877765322 24444211
Q ss_pred CCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHH
Q 017176 147 DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL 226 (376)
Q Consensus 147 ~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l 226 (376)
.+.+++ .+++++.+.|.|.+||-.. .+.+..+++.. +++||-.=.+.+..+...+.
T Consensus 64 --~~~~~i----~~~~~~~~~d~vQLHg~e~-----------------~~~~~~l~~~~-~~~iik~i~v~~~~~l~~~~ 119 (210)
T PRK01222 64 --ASDEEI----DEIVETVPLDLLQLHGDET-----------------PEFCRQLKRRY-GLPVIKALRVRSAGDLEAAA 119 (210)
T ss_pred --CCHHHH----HHHHHhcCCCEEEECCCCC-----------------HHHHHHHHhhc-CCcEEEEEecCCHHHHHHHH
Confidence 233333 3345689999999998421 23445555443 57777666666655555544
Q ss_pred H--cCcCeeEEc
Q 017176 227 R--KGAHHVMVG 236 (376)
Q Consensus 227 ~--~Gad~VmiG 236 (376)
+ ..||.+++=
T Consensus 120 ~~~~~~d~~L~D 131 (210)
T PRK01222 120 AYYGDADGLLLD 131 (210)
T ss_pred hhhccCCEEEEc
Confidence 4 357877764
|
|
| >cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain | Back alignment and domain information |
|---|
Probab=88.51 E-value=19 Score=35.72 Aligned_cols=198 Identities=13% Similarity=0.099 Sum_probs=107.0
Q ss_pred cCCCCChHHHHHHH--HHhCCCcEEE-ecceeecccccccchhhhhh----c-cCCCC--CCEEEEecCCCHHHHHHHHH
Q 017176 15 PMMDWTDNHYRTLA--RLISKHAWLY-TEMLAAETIIYQQGNLDRFL----A-FSPEQ--HPIVLQIGGSNLDNLAKATE 84 (376)
Q Consensus 15 PM~~~td~~~r~~~--~~~Gg~gl~~-te~v~~~~~~~~~~~~~~~~----~-~~~~~--~p~~vQL~g~~~~~~~~aa~ 84 (376)
|+.|.|..++..+| ...||++++= -|.+....+..-.+...... + ..+.+ .-..++|.+.. +++.+-++
T Consensus 136 P~~Glsp~~~a~~~y~~~~GG~D~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~~~-~em~~ra~ 214 (366)
T cd08148 136 PKLGLNPKYTAEAAYAAALGGLDLIKDDETLTDQPFCPLRDRITEVAAALDRVQEETGEKKLYAVNVTAGT-FEIIERAE 214 (366)
T ss_pred cccCCCHHHHHHHHHHHHhCCCCccccccccCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEEEccCCH-HHHHHHHH
Confidence 88999999999887 4668888763 22222222221111111111 1 11222 23688998765 89999999
Q ss_pred HHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcc--cCccEEEEecCCCCCC----c-cHHHHHHH
Q 017176 85 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN--TNVPVSVKCRIGVDDH----D-SYNQLCDF 157 (376)
Q Consensus 85 ~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~--~~~pv~vKiR~g~~~~----~-~~~~~~~~ 157 (376)
.+.++|..++-+|.. ..+|. .++++++. .++|+-. .|.++.-. . -+.- ..
T Consensus 215 ~~~~~G~~~~mv~~~--------~~G~~------------~l~~l~~~~~~~l~Iha-HrA~~ga~~~~~~~G~~~--~~ 271 (366)
T cd08148 215 RALELGANMLMVDVL--------TAGFS------------ALQALAEDFEIDLPIHV-HRAMHGAVTRSKFHGISM--LV 271 (366)
T ss_pred HHHHhCCCEEEEecc--------ccchH------------HHHHHHHhCcCCcEEEe-ccccccccccCCCCCcCH--HH
Confidence 999999999988741 12222 24444442 3555543 23332110 0 0111 23
Q ss_pred HHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC----CCCeEEEecCCCCHHHHHHHHH-cCcCe
Q 017176 158 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF----PDLTFTLNGGINTVDEVNAALR-KGAHH 232 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~----~~ipVi~nGgI~s~~da~~~l~-~Gad~ 232 (376)
+.++..-+|+|.+++.+-.....+ .. .........+.+.. +-.| +.+||+ ++..+.++++ .|-|.
T Consensus 272 l~kl~RLaGaD~~~~~t~~Gk~~~---~~-----~~~~~~~~~~~~~~~~~k~~~P-v~sgG~-~~~~vp~~~~~~G~Dv 341 (366)
T cd08148 272 LAKLLRMAGGDFIHTGTVVGKMAL---ER-----EEALGIADALTDDWAGFKRVFP-VASGGI-HPGLVPGILRDFGIDV 341 (366)
T ss_pred HHHHHHHcCCCccccCCcccCcCC---CH-----HHHHHHHHHHhCcccCCCCceE-eccCCC-ChhHHHHHHHHhCCcE
Confidence 456666789999876532111111 00 00011112222211 1234 345666 7888888888 89884
Q ss_pred -eEEchHHhhCCchh
Q 017176 233 -VMVGRAAYQNPWYT 246 (376)
Q Consensus 233 -VmiGRa~l~~P~lf 246 (376)
+++|-|+++.|+=.
T Consensus 342 il~~GGgi~gHp~G~ 356 (366)
T cd08148 342 ILQAGGGIHGHPDGT 356 (366)
T ss_pred EEEcCccccCCCCCh
Confidence 45788999999853
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. |
| >cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria | Back alignment and domain information |
|---|
Probab=88.37 E-value=12 Score=37.75 Aligned_cols=144 Identities=19% Similarity=0.137 Sum_probs=87.5
Q ss_pred CCCCEEEEec----CCCHHHHHHHHHHHHHCCCCEEE--ecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCcc
Q 017176 63 EQHPIVLQIG----GSNLDNLAKATELANAYNYDEIN--LNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 136 (376)
Q Consensus 63 ~~~p~~vQL~----g~~~~~~~~aa~~~~~~G~d~Ie--iN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~p 136 (376)
.++|++.-+. |-+|+.+++.+..+...|.|.|- =|+..|. =+-+.+|.+.+.+.++...+.++..
T Consensus 141 ~~RPLigtiiKP~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~---------~~p~~eRv~~~~~a~~~a~~eTG~~ 211 (406)
T cd08207 141 EDRPLIGTIIKPSVGLTPEETAALVRQLAAAGIDFIKDDELLANPP---------YSPLDERVRAVMRVINDHAQRTGRK 211 (406)
T ss_pred CCCceEEEecccccCCCHHHHHHHHHHHHhCCCCcccccccCCCCC---------CCcHHHHHHHHHHHHHHHHHhhCCc
Confidence 5788888875 66899999999998888988872 2232221 1122345566666666666667654
Q ss_pred EEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEE----E
Q 017176 137 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT----L 212 (376)
Q Consensus 137 v~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi----~ 212 (376)
...-.. +.. +.+++.+... .+.+.|+.++.+..-.. | +..+..+++. .++||. +
T Consensus 212 ~~y~~N--iT~--~~~em~~ra~-~~~~~G~~~~mv~~~~~---G-------------~~~l~~l~~~-~~l~IhaHra~ 269 (406)
T cd08207 212 VMYAFN--ITD--DIDEMRRNHD-LVVEAGGTCVMVSLNSV---G-------------LSGLAALRRH-SQLPIHGHRNG 269 (406)
T ss_pred ceEEEe--cCC--CHHHHHHHHH-HHHHhCCCeEEEecccc---c-------------hHHHHHHHhc-CCceEEECCCc
Confidence 332222 222 2556655433 34568998888765431 2 4556666664 588887 3
Q ss_pred ec--------CCCCHHHHHHHHH-cCcCeeEEchH
Q 017176 213 NG--------GINTVDEVNAALR-KGAHHVMVGRA 238 (376)
Q Consensus 213 nG--------gI~s~~da~~~l~-~Gad~VmiGRa 238 (376)
.| ||.. .-..++.+ .|+|.+.++.-
T Consensus 270 ~ga~~r~p~~Gis~-~vl~kl~RLaGaD~~~~~~~ 303 (406)
T cd08207 270 WGMLTRSPALGISF-QAYQKLWRLAGVDHLHVNGL 303 (406)
T ss_pred ceecccCCCCCCcH-HHHHHHHHHcCCCccccCCC
Confidence 44 3333 23455556 89999998763
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown. |
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=88.31 E-value=6.2 Score=35.18 Aligned_cols=89 Identities=13% Similarity=0.100 Sum_probs=56.1
Q ss_pred HHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHh
Q 017176 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLR 203 (376)
Q Consensus 124 eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~ 203 (376)
++++.+.+. ++..=+|. .+.++..+.+..++ +.|++.|.+.-++.. ..+.+..+.+
T Consensus 4 ~~~~~l~~~---~~~~v~r~-----~~~~~~~~~~~~~~-~~Gv~~vqlr~k~~~---------------~~e~~~~~~~ 59 (187)
T PRK07455 4 DWLAQLQQH---RAIAVIRA-----PDLELGLQMAEAVA-AGGMRLIEITWNSDQ---------------PAELISQLRE 59 (187)
T ss_pred HHHHHHHhC---CEEEEEEc-----CCHHHHHHHHHHHH-HCCCCEEEEeCCCCC---------------HHHHHHHHHH
Confidence 445555443 44444564 23344444444444 689999988755421 1344555544
Q ss_pred hCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEch
Q 017176 204 DFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 204 ~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGR 237 (376)
.. ..-.++.|-+.+.+++..+++.|||+|+++-
T Consensus 60 ~~-~~~~~g~gtvl~~d~~~~A~~~gAdgv~~p~ 92 (187)
T PRK07455 60 KL-PECIIGTGTILTLEDLEEAIAAGAQFCFTPH 92 (187)
T ss_pred hC-CCcEEeEEEEEcHHHHHHHHHcCCCEEECCC
Confidence 43 3445788999999999999999999997765
|
|
| >cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV | Back alignment and domain information |
|---|
Probab=88.16 E-value=16 Score=36.35 Aligned_cols=200 Identities=15% Similarity=0.165 Sum_probs=105.0
Q ss_pred cEEEc---cCCCCChHHHHHHHH--HhCCCcEEE-ecceeecccccccchhhh---hhccCC----CCCCEEEEecCCCH
Q 017176 10 WFSVA---PMMDWTDNHYRTLAR--LISKHAWLY-TEMLAAETIIYQQGNLDR---FLAFSP----EQHPIVLQIGGSNL 76 (376)
Q Consensus 10 ri~lA---PM~~~td~~~r~~~~--~~Gg~gl~~-te~v~~~~~~~~~~~~~~---~~~~~~----~~~p~~vQL~g~~~ 76 (376)
|++.. |..+.+...++.++. ..||++.+. -|.+.........++... -++... ...+++.++.+. .
T Consensus 131 Pli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~nit~~-~ 209 (367)
T cd08205 131 PLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYAPNITGD-P 209 (367)
T ss_pred CeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCCC-H
Confidence 45555 445788888988763 446777764 333333333222222111 111111 234567888766 4
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCC----CccHH
Q 017176 77 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD----HDSYN 152 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~----~~~~~ 152 (376)
+++.+-|+.++++|.|++-++.- . ||-.. ++.+++..++|+..- |.++.- ....-
T Consensus 210 ~e~i~~a~~a~~~Gad~vmv~~~--~--------~g~~~----------~~~l~~~~~lpi~~H-~a~~ga~~~~~~~g~ 268 (367)
T cd08205 210 DELRRRADRAVEAGANALLINPN--L--------VGLDA----------LRALAEDPDLPIMAH-PAFAGALSRSPDYGS 268 (367)
T ss_pred HHHHHHHHHHHHcCCCEEEEecc--c--------ccccH----------HHHHHhcCCCeEEEc-cCcccccccCCCCcC
Confidence 89999999999999999999741 1 23111 122222335565442 222110 00000
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHh----hCC----CCeEEEecCCCCHHHHHH
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLR----DFP----DLTFTLNGGINTVDEVNA 224 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~----~~~----~ipVi~nGgI~s~~da~~ 224 (376)
. ...+.++..-+|+|.+++.+-.. ++.. .-+.+.++.+ ... ..|+. +||+ ++..+.+
T Consensus 269 ~-~~~~~kl~RlaGad~~~~~~~~g---k~~~---------~~~~~~~la~~~~~~~~~iK~~~Pv~-sgG~-~~~~v~~ 333 (367)
T cd08205 269 H-FLLLGKLMRLAGADAVIFPGPGG---RFPF---------SREECLAIARACRRPLGGIKPALPVP-SGGM-HPGRVPE 333 (367)
T ss_pred C-HHHHHHHHHHcCCCccccCCCcc---CcCC---------CHHHHHHHHHHHhCccccCCCceeec-cCCC-CHHHHHH
Confidence 0 12345666779999987653211 1100 0122223322 211 23433 4555 5678888
Q ss_pred HHH-cCcCe-eEEchHHhhCCchh
Q 017176 225 ALR-KGAHH-VMVGRAAYQNPWYT 246 (376)
Q Consensus 225 ~l~-~Gad~-VmiGRa~l~~P~lf 246 (376)
+++ .|.|. +++|-++++.|+=.
T Consensus 334 l~~~~G~dv~~~~GGgi~gHp~g~ 357 (367)
T cd08205 334 LYRDYGPDVILLAGGGILGHPDGA 357 (367)
T ss_pred HHHHhCCcEEEEcCchhcCCCCCh
Confidence 887 78884 56788999999853
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl |
| >PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating) | Back alignment and domain information |
|---|
Probab=88.14 E-value=2.7 Score=40.59 Aligned_cols=71 Identities=8% Similarity=0.052 Sum_probs=45.9
Q ss_pred CCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017176 165 SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 165 ~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
+|+|.|-+..... ++.+ ... ..+.+.+.++.. ...|+-++||| +.+.+.+..++|+|.+.+|.--..-|
T Consensus 228 agaDiImLDnm~~-----~~~~---~~~-~~e~l~~av~~~~~~~~lEaSGGI-t~~ni~~yA~tGVD~Is~Galthsa~ 297 (308)
T PLN02716 228 TSLTRVMLDNMVV-----PLEN---GDV-DVSMLKEAVELINGRFETEASGNV-TLDTVHKIGQTGVTYISSGALTHSVK 297 (308)
T ss_pred CCCCEEEeCCCcc-----cccc---cCC-CHHHHHHHHHhhCCCceEEEECCC-CHHHHHHHHHcCCCEEEeCccccCCC
Confidence 8999998876511 0000 000 133344443322 25789999999 78999999899999999998555445
Q ss_pred ch
Q 017176 244 WY 245 (376)
Q Consensus 244 ~l 245 (376)
++
T Consensus 298 ~~ 299 (308)
T PLN02716 298 AL 299 (308)
T ss_pred cc
Confidence 53
|
|
| >COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.12 E-value=5.3 Score=35.98 Aligned_cols=46 Identities=24% Similarity=0.407 Sum_probs=38.4
Q ss_pred HHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017176 195 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 195 ~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
++.+..+... ..-||+..|||.-.+|.+.+...|+++|.+||++..
T Consensus 170 ~E~l~~~~~~-s~~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh~ 215 (229)
T COG1411 170 YELLTKVLEL-SEHPVLLGGGVGGMEDLELLLGMGVSGVLVATALHE 215 (229)
T ss_pred HHHHHHHHHh-ccCceeecCCcCcHHHHHHHhcCCCceeeehhhhhc
Confidence 6666665543 367999999999999999998899999999999864
|
|
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=88.04 E-value=25 Score=33.52 Aligned_cols=156 Identities=15% Similarity=0.067 Sum_probs=91.9
Q ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEE
Q 017176 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 140 (376)
Q Consensus 61 ~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vK 140 (376)
.....|+++++.. +..+..+.++.++++|+|++-+- .|.. - ....+.+.+-.++|.+.+++|+.+-
T Consensus 66 ~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~--pP~y--------~---~~~~~~i~~~f~~v~~~~~~pi~lY 131 (289)
T cd00951 66 TAGRVPVLAGAGY-GTATAIAYAQAAEKAGADGILLL--PPYL--------T---EAPQEGLYAHVEAVCKSTDLGVIVY 131 (289)
T ss_pred hCCCCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEEC--CCCC--------C---CCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 3456799999976 78888899999999999999882 2321 1 0235678888888888889999987
Q ss_pred ecCCCCCCccHHHHHHHHHHHhhcC-CccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCH
Q 017176 141 CRIGVDDHDSYNQLCDFIYKVSSLS-PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV 219 (376)
Q Consensus 141 iR~g~~~~~~~~~~~~~i~~~~e~~-Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~ 219 (376)
-+.|.+- +. ++ +.++.++. .+-.|--..+ ++..+.++++...+--.+.+|. .+.
T Consensus 132 n~~g~~l--~~-~~---l~~L~~~~pnivgiKds~~------------------d~~~~~~~~~~~~~~~~v~~G~-~~~ 186 (289)
T cd00951 132 NRANAVL--TA-DS---LARLAERCPNLVGFKDGVG------------------DIELMRRIVAKLGDRLLYLGGL-PTA 186 (289)
T ss_pred eCCCCCC--CH-HH---HHHHHhcCCCEEEEEeCCC------------------CHHHHHHHHHhcCCCeEEEeCC-Ccc
Confidence 6665432 22 22 23333322 2322221111 1344445544433212344453 222
Q ss_pred HH-HHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhC
Q 017176 220 DE-VNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256 (376)
Q Consensus 220 ~d-a~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 256 (376)
+. +...+..||+|++.|-+-+ -|.++.+.++....|
T Consensus 187 d~~~~~~l~~Ga~G~is~~~n~-~P~~~~~l~~~~~~g 223 (289)
T cd00951 187 EVFALAYLAMGVPTYSSAVFNF-VPEIALAFYAAVRAG 223 (289)
T ss_pred hHhHHHHHHCCCCEEEechhhh-hHHHHHHHHHHHHcC
Confidence 22 4566668999998877644 477765544443344
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=87.85 E-value=26 Score=33.60 Aligned_cols=156 Identities=15% Similarity=0.099 Sum_probs=90.4
Q ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEE
Q 017176 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 140 (376)
Q Consensus 61 ~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vK 140 (376)
.....|+++++.+ +.++..+.++.++++|+|++-+- -|.. .+ ...+.+.+-.+++.+.+++||.+-
T Consensus 73 ~~~~~pvi~gv~~-~t~~~i~~~~~a~~~Gadav~~~--pP~y--~~---------~~~~~i~~~f~~va~~~~lpi~lY 138 (303)
T PRK03620 73 TAGRVPVIAGAGG-GTAQAIEYAQAAERAGADGILLL--PPYL--TE---------APQEGLAAHVEAVCKSTDLGVIVY 138 (303)
T ss_pred hCCCCcEEEecCC-CHHHHHHHHHHHHHhCCCEEEEC--CCCC--CC---------CCHHHHHHHHHHHHHhCCCCEEEE
Confidence 4556799999975 88889999999999999999883 2321 11 135678888888888889999887
Q ss_pred ecCCCCCCccHHHHHHHHHHHhhcC-CccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCCCC
Q 017176 141 CRIGVDDHDSYNQLCDFIYKVSSLS-PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINT 218 (376)
Q Consensus 141 iR~g~~~~~~~~~~~~~i~~~~e~~-Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI~s 218 (376)
-+.|.+- +.+ + +.++.++. .+..|--+.+ +...+.++++... +. .+.+|.=.+
T Consensus 139 n~~g~~l--~~~-~---l~~L~~~~pni~giK~s~~------------------d~~~~~~~~~~~~~~f-~vl~G~d~~ 193 (303)
T PRK03620 139 NRDNAVL--TAD-T---LARLAERCPNLVGFKDGVG------------------DIELMQRIVRALGDRL-LYLGGLPTA 193 (303)
T ss_pred cCCCCCC--CHH-H---HHHHHhhCCCEEEEEeCCC------------------CHHHHHHHHHHcCCCe-EEEeCCCcc
Confidence 6665432 222 2 23343222 3333332211 1334445544433 33 344553111
Q ss_pred HHHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhC
Q 017176 219 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256 (376)
Q Consensus 219 ~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 256 (376)
-..+..++..|++|...|-+-+ .|.++.+.++....|
T Consensus 194 e~~~~~~~~~G~~G~is~~an~-~P~~~~~l~~~~~~g 230 (303)
T PRK03620 194 EVFAAAYLALGVPTYSSAVFNF-VPEIALAFYRALRAG 230 (303)
T ss_pred hhhHHHHHhCCCCEEEecHHhh-hHHHHHHHHHHHHCC
Confidence 1223344557999998876643 366654444443344
|
|
| >PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4 | Back alignment and domain information |
|---|
Probab=87.81 E-value=7.9 Score=35.35 Aligned_cols=93 Identities=14% Similarity=0.179 Sum_probs=61.0
Q ss_pred EEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCC
Q 017176 69 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH 148 (376)
Q Consensus 69 vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~ 148 (376)
+.|.+.+.+++.+.++.+...|+|.||+-..+ +.. ...+.+.+.+..+++.+++|+.+-+|.-++..
T Consensus 2 v~l~~~~~~~~~~~~~~~~~~~~D~vElRlD~----------l~~---~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG 68 (224)
T PF01487_consen 2 VPLTGSTLEELLAELEEAESSGADAVELRLDY----------LEN---DSAEDISEQLAELRRSLDLPIIFTVRTKEEGG 68 (224)
T ss_dssp EEE--SSHHHHHHHHHHHHHTTTSEEEEEGGG----------STT---TSHHHHHHHHHHHHHHCTSEEEEE--BGGGTS
T ss_pred EeeCCCCHHHHHHHHHHHHhcCCCEEEEEecc----------ccc---cChHHHHHHHHHHHHhCCCCEEEEecccccCC
Confidence 56788999999888888888799999996532 111 45678888899998888999998888632211
Q ss_pred ---ccHHHHHHHHHHHhhcCCccEEEEccC
Q 017176 149 ---DSYNQLCDFIYKVSSLSPTRHFIIHSR 175 (376)
Q Consensus 149 ---~~~~~~~~~i~~~~e~~Gvd~I~vh~r 175 (376)
.+-++-.+++..++ +.|+++|.|--.
T Consensus 69 ~~~~~~~~~~~ll~~~~-~~~~d~iDiE~~ 97 (224)
T PF01487_consen 69 RFQGSEEEYLELLERAI-RLGPDYIDIELD 97 (224)
T ss_dssp SBSS-HHHHHHHHHHHH-HHTSSEEEEEGG
T ss_pred CCcCCHHHHHHHHHHHH-HcCCCEEEEEcc
Confidence 11223334444444 466999999654
|
2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A .... |
| >cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV | Back alignment and domain information |
|---|
Probab=87.79 E-value=19 Score=35.78 Aligned_cols=144 Identities=16% Similarity=0.078 Sum_probs=83.5
Q ss_pred CCCCEEEEec----CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCc--c
Q 017176 63 EQHPIVLQIG----GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV--P 136 (376)
Q Consensus 63 ~~~p~~vQL~----g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~--p 136 (376)
.++|++.-++ |-+++.+++.+..+.+.|.|+|-..-+.-.. . =..+..|.+.+.+.++.+.+.++. +
T Consensus 128 ~~rPli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge~------~-~~~~eER~~~v~~av~~a~~~TG~~~~ 200 (367)
T cd08205 128 HDRPLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDELLADQ------P-YAPFEERVRACMEAVRRANEETGRKTL 200 (367)
T ss_pred CCCCeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeccccccCc------c-cCCHHHHHHHHHHHHHHHHHhhCCcce
Confidence 4678888776 4579999999999999999998543221111 0 122345667777777777766643 2
Q ss_pred EEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEe---
Q 017176 137 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN--- 213 (376)
Q Consensus 137 v~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~n--- 213 (376)
+.+-+ .. ..+++++. ++.++++|+|++-|..-.. | +..+..+.++. ++||.+-
T Consensus 201 y~~ni----t~--~~~e~i~~-a~~a~~~Gad~vmv~~~~~---g-------------~~~~~~l~~~~-~lpi~~H~a~ 256 (367)
T cd08205 201 YAPNI----TG--DPDELRRR-ADRAVEAGANALLINPNLV---G-------------LDALRALAEDP-DLPIMAHPAF 256 (367)
T ss_pred EEEEc----CC--CHHHHHHH-HHHHHHcCCCEEEEecccc---c-------------ccHHHHHHhcC-CCeEEEccCc
Confidence 33322 21 13455554 4455689999988865321 1 11123333332 6666541
Q ss_pred -cC-------CCCHHHHHHHHH-cCcCeeEEch
Q 017176 214 -GG-------INTVDEVNAALR-KGAHHVMVGR 237 (376)
Q Consensus 214 -Gg-------I~s~~da~~~l~-~Gad~VmiGR 237 (376)
|- +.+..-..++.+ .|+|.+..+.
T Consensus 257 ~ga~~~~~~~g~~~~~~~kl~RlaGad~~~~~~ 289 (367)
T cd08205 257 AGALSRSPDYGSHFLLLGKLMRLAGADAVIFPG 289 (367)
T ss_pred ccccccCCCCcCCHHHHHHHHHHcCCCccccCC
Confidence 11 334444445555 7888886644
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl |
| >COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription] | Back alignment and domain information |
|---|
Probab=87.78 E-value=2.3 Score=37.31 Aligned_cols=54 Identities=20% Similarity=0.174 Sum_probs=42.8
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeE
Q 017176 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM 234 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vm 234 (376)
++.+.|+|.|=++-. -..+.++.++. ++|||+.|=|.+-+++.++++.||-+|.
T Consensus 118 ~~~~pD~iEvLPGv~-----------------Pkvi~~i~~~t-~~piIAGGLi~t~Eev~~Al~aGA~avS 171 (181)
T COG1954 118 EKSEPDFIEVLPGVM-----------------PKVIKEITEKT-HIPIIAGGLIETEEEVREALKAGAVAVS 171 (181)
T ss_pred HHcCCCEEEEcCccc-----------------HHHHHHHHHhc-CCCEEeccccccHHHHHHHHHhCcEEEe
Confidence 467899998876521 23455666654 8999999999999999999999998876
|
|
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=87.72 E-value=5.3 Score=39.87 Aligned_cols=111 Identities=5% Similarity=-0.062 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCcccc---CCCCCCCCCCCCccc
Q 017176 119 PKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL---NGISPAENRTIPPLK 194 (376)
Q Consensus 119 ~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~---~g~~~~~~~~~~~~~ 194 (376)
.+...+-+..+++.. ++|+.+.+--+.+ .++..+. ++.++++|+|+|.+.-..... ++. +..... +
T Consensus 97 ~~~~l~~i~~~k~~~~~~pvIaSi~~~~s----~~~~~~~-a~~~e~~GaD~iELNiSCPn~~~~r~~-g~~~gq----~ 166 (385)
T PLN02495 97 FETMLAEFKQLKEEYPDRILIASIMEEYN----KDAWEEI-IERVEETGVDALEINFSCPHGMPERKM-GAAVGQ----D 166 (385)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEccCCCC----HHHHHHH-HHHHHhcCCCEEEEECCCCCCCCcCcc-chhhcc----C
Confidence 344444456666555 6799887643222 2333333 334567999999974221110 110 000001 1
Q ss_pred HHHHHHH---HhhCCCCeEEE--ecCCCCHHHHHHHHH-cCcCeeEEchHH
Q 017176 195 YEYYYAL---LRDFPDLTFTL--NGGINTVDEVNAALR-KGAHHVMVGRAA 239 (376)
Q Consensus 195 ~~~v~~~---~~~~~~ipVi~--nGgI~s~~da~~~l~-~Gad~VmiGRa~ 239 (376)
.+.+.++ +++..++||+. .-++.+..++.+++. .|||+|.+---+
T Consensus 167 ~e~~~~i~~~Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~ 217 (385)
T PLN02495 167 CDLLEEVCGWINAKATVPVWAKMTPNITDITQPARVALKSGCEGVAAINTI 217 (385)
T ss_pred HHHHHHHHHHHHHhhcCceEEEeCCChhhHHHHHHHHHHhCCCEEEEeccc
Confidence 2333332 23334789874 567777877777555 999999875433
|
|
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=87.71 E-value=6.5 Score=38.12 Aligned_cols=90 Identities=9% Similarity=0.173 Sum_probs=57.0
Q ss_pred CCCEEEEec-C-CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe
Q 017176 64 QHPIVLQIG-G-SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 141 (376)
Q Consensus 64 ~~p~~vQL~-g-~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 141 (376)
+.|+.+=+- | .+.+.+.+.++.++++|+|.|.+|..... ..|.+... ++ +.++.+++.+++||..=
T Consensus 133 ~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~------~~y~g~~~-~~----~~i~~ik~~~~iPVi~n- 200 (312)
T PRK10550 133 HLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKE------DGYRAEHI-NW----QAIGEIRQRLTIPVIAN- 200 (312)
T ss_pred CcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCc------cCCCCCcc-cH----HHHHHHHhhcCCcEEEe-
Confidence 578888764 3 34456789999999999999999975432 22332111 33 56666777778887651
Q ss_pred cCCCCCCccHHHHHHHHHHHhhcCCccEEEEc
Q 017176 142 RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH 173 (376)
Q Consensus 142 R~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh 173 (376)
.+..+.++.. ++++..|+|.|.+-
T Consensus 201 ----GdI~t~~da~----~~l~~~g~DgVmiG 224 (312)
T PRK10550 201 ----GEIWDWQSAQ----QCMAITGCDAVMIG 224 (312)
T ss_pred ----CCcCCHHHHH----HHHhccCCCEEEEc
Confidence 2223444432 34457899987764
|
|
| >PTZ00333 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=87.70 E-value=21 Score=33.58 Aligned_cols=41 Identities=15% Similarity=0.294 Sum_probs=30.9
Q ss_pred CCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHhhCCchhhHhh
Q 017176 207 DLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHV 250 (376)
Q Consensus 207 ~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~lf~~~~ 250 (376)
+++|+.-|+|.... +.+.+. .++||+.||++.+. +. |...+
T Consensus 207 ~~~ILYGGSV~~~N-~~~l~~~~~vDG~LvG~asl~-~~-f~~Ii 248 (255)
T PTZ00333 207 ATRIIYGGSVNEKN-CKELIKQPDIDGFLVGGASLK-PD-FVDII 248 (255)
T ss_pred cceEEEcCCCCHHH-HHHHhcCCCCCEEEEehHhhh-hh-HHHHH
Confidence 68999999995554 445554 89999999999997 65 55443
|
|
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=87.68 E-value=2.8 Score=40.18 Aligned_cols=90 Identities=14% Similarity=0.142 Sum_probs=0.0
Q ss_pred CCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCCCCHHHHHH
Q 017176 146 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNA 224 (376)
Q Consensus 146 ~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI~s~~da~~ 224 (376)
+..-+.+.+.+.+..++. .|++.|.+.|.+......+..+. .+.+...++... ++||++.=+-.+.+++.+
T Consensus 15 dg~iD~~~l~~lv~~~~~-~Gv~gi~v~GstGE~~~Ls~~Er-------~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~ 86 (294)
T TIGR02313 15 NGDIDEEALRELIEFQIE-GGSHAISVGGTSGEPGSLTLEER-------KQAIENAIDQIAGRIPFAPGTGALNHDETLE 86 (294)
T ss_pred CCCcCHHHHHHHHHHHHH-cCCCEEEECccCcccccCCHHHH-------HHHHHHHHHHhCCCCcEEEECCcchHHHHHH
Q ss_pred HHH----cCcCeeEEchHHhhCC
Q 017176 225 ALR----KGAHHVMVGRAAYQNP 243 (376)
Q Consensus 225 ~l~----~Gad~VmiGRa~l~~P 243 (376)
..+ .|||+||+.-..+..|
T Consensus 87 ~a~~A~~~Gad~v~v~pP~y~~~ 109 (294)
T TIGR02313 87 LTKFAEEAGADAAMVIVPYYNKP 109 (294)
T ss_pred HHHHHHHcCCCEEEEcCccCCCC
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2 | Back alignment and domain information |
|---|
Probab=87.52 E-value=6.4 Score=37.07 Aligned_cols=156 Identities=13% Similarity=0.131 Sum_probs=73.8
Q ss_pred CCChHHHHHHHHHhCCCcEEEecceeec-ccccccc---hhhhhh------ccCCCCCCEEEEe-cC---CCHHH-HHHH
Q 017176 18 DWTDNHYRTLARLISKHAWLYTEMLAAE-TIIYQQG---NLDRFL------AFSPEQHPIVLQI-GG---SNLDN-LAKA 82 (376)
Q Consensus 18 ~~td~~~r~~~~~~Gg~gl~~te~v~~~-~~~~~~~---~~~~~~------~~~~~~~p~~vQL-~g---~~~~~-~~~a 82 (376)
+.-|.++..++.+.| ++++..+=.... -+.+.+. ..+.++ .......-+++-+ |+ .++++ +..|
T Consensus 22 TaYD~~~A~~~d~ag-vD~iLVGDSlgmv~~G~~sT~~vtld~mi~h~~aV~Rga~~~~vv~DmPf~sy~~s~e~av~nA 100 (261)
T PF02548_consen 22 TAYDYPSARIADEAG-VDIILVGDSLGMVVLGYDSTLPVTLDEMIYHTKAVRRGAPNAFVVADMPFGSYQASPEQAVRNA 100 (261)
T ss_dssp E--SHHHHHHHHHTT--SEEEE-TTHHHHTT--SSSTT--HHHHHHHHHHHHHH-TSSEEEEE--TTSSTSSHHHHHHHH
T ss_pred ecccHHHHHHHHHcC-CCEEEeCCcHHHheeCCCCCcCcCHHHHHHHHHHHHhcCCCceEEecCCcccccCCHHHHHHHH
Confidence 445788888888886 888765421111 1111110 011111 1111222233333 22 34554 4555
Q ss_pred HHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC---------CC----CCCc
Q 017176 83 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI---------GV----DDHD 149 (376)
Q Consensus 83 a~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~---------g~----~~~~ 149 (376)
.+.++++|+|.|-|-.|. ...++++++.+ .++||.--+-+ |+ .+.+
T Consensus 101 ~rl~ke~GadaVKlEGg~--------------------~~~~~i~~l~~-~GIPV~gHiGLtPQ~~~~~GGyr~qGk~~~ 159 (261)
T PF02548_consen 101 GRLMKEAGADAVKLEGGA--------------------EIAETIKALVD-AGIPVMGHIGLTPQSVHQLGGYRVQGKTAE 159 (261)
T ss_dssp HHHHHTTT-SEEEEEBSG--------------------GGHHHHHHHHH-TT--EEEEEES-GGGHHHHTSS--CSTSHH
T ss_pred HHHHHhcCCCEEEeccch--------------------hHHHHHHHHHH-CCCcEEEEecCchhheeccCCceEEecCHH
Confidence 556677999999774321 12345555543 37898765533 11 1112
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecC
Q 017176 150 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 215 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGg 215 (376)
+..++++. ++.+|++|+-.|.+..-. -+.-..+.++ .+||+|+-|.
T Consensus 160 ~a~~l~~~-A~ale~AGaf~ivlE~vp------------------~~la~~It~~-l~IPtIGIGa 205 (261)
T PF02548_consen 160 EAEKLLED-AKALEEAGAFAIVLECVP------------------AELAKAITEA-LSIPTIGIGA 205 (261)
T ss_dssp HHHHHHHH-HHHHHHHT-SEEEEESBB------------------HHHHHHHHHH-SSS-EEEESS
T ss_pred HHHHHHHH-HHHHHHcCccEEeeecCH------------------HHHHHHHHHh-CCCCEEecCC
Confidence 33444443 456789999999987532 2333445555 4999998774
|
1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D. |
| >TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III | Back alignment and domain information |
|---|
Probab=87.45 E-value=20 Score=36.12 Aligned_cols=145 Identities=12% Similarity=0.050 Sum_probs=87.0
Q ss_pred CCCCEEEEec----CCCHHHHHHHHHHHHHCCCCEEEe--cCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCcc
Q 017176 63 EQHPIVLQIG----GSNLDNLAKATELANAYNYDEINL--NCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 136 (376)
Q Consensus 63 ~~~p~~vQL~----g~~~~~~~~aa~~~~~~G~d~Iei--N~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~p 136 (376)
.++|++.-+. |-+|+.+++.+..+...|.|.|-= |+..|. =+-+.+|.+.+.+.+++..+.++..
T Consensus 142 ~~RPL~gtiiKP~~Glsp~~~a~~~~~~~~GGvD~IKDDE~l~~q~---------~~p~~eRv~~~~~a~~~a~~eTG~~ 212 (412)
T TIGR03326 142 KDRPLLGTVPKPKVGLSTEEHAKVAYELWSGGVDLLKDDENLTSQP---------FNRFEERVEKLYKVRDKVEAETGER 212 (412)
T ss_pred CCCceEEeeccccccCChHHHHHHHHHHHhcCCceeecCCCCCCCC---------CccHHHHHHHHHHHHHHHHHHhCCc
Confidence 4688887775 668999999999998889888832 222111 1122345566666666666667654
Q ss_pred EEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhh--CCCCeEEE--
Q 017176 137 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD--FPDLTFTL-- 212 (376)
Q Consensus 137 v~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~--~~~ipVi~-- 212 (376)
...-..+ .. +.+++.+.. +.+.+.|+.++-|..-+. | +..+..+++. ..++||.+
T Consensus 213 ~~ya~Ni--T~--~~~em~~ra-~~~~~~G~~~~mv~~~~~---G-------------~~~l~~l~~~~~~~~l~ih~Hr 271 (412)
T TIGR03326 213 KEYLANI--TA--PVREMERRA-ELVADLGGQYVMVDVVVC---G-------------WSALQYIRELTEDLGLAIHAHR 271 (412)
T ss_pred ceEEEEe--cC--CHHHHHHHH-HHHHHhCCCeEEEEeecc---c-------------hHHHHHHHHhhccCCeEEEEcC
Confidence 3322222 22 244555543 334568998888765432 2 4445555553 34788876
Q ss_pred --ec--------CCCCHHHHHHHHH-cCcCeeEEchH
Q 017176 213 --NG--------GINTVDEVNAALR-KGAHHVMVGRA 238 (376)
Q Consensus 213 --nG--------gI~s~~da~~~l~-~Gad~VmiGRa 238 (376)
.| ||.. .-..++.+ .|+|.+.++..
T Consensus 272 a~~ga~~~~~~~Gis~-~vl~kl~RLaGaD~~~~~t~ 307 (412)
T TIGR03326 272 AMHAAFTRNPKHGISM-FALAKLYRLIGVDQLHTGTA 307 (412)
T ss_pred CcccccccCCCCcCcH-HHHHHHHHHcCCCeeeeCCC
Confidence 22 4543 33555556 89999998876
|
Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis. |
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=87.42 E-value=11 Score=36.19 Aligned_cols=125 Identities=13% Similarity=0.156 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 152 (376)
|.+.+.+-++.+.+.|+|+|=++.. +|+ + ..-..+.-.++++.+.+.+ .+||.+-+ | . ++.
T Consensus 24 D~~~l~~li~~l~~~Gv~gi~v~Gs--------tGE-~--~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv--~--~--~t~ 86 (296)
T TIGR03249 24 DEAAYRENIEWLLGYGLEALFAAGG--------TGE-F--FSLTPAEYEQVVEIAVSTAKGKVPVYTGV--G--G--NTS 86 (296)
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCC--------CcC-c--ccCCHHHHHHHHHHHHHHhCCCCcEEEec--C--c--cHH
Confidence 6788899999999999999988642 233 2 2223344445555444433 46777754 2 1 244
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEE-Ee--cCCCCHHHHHHHHH
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT-LN--GGINTVDEVNAALR 227 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi-~n--GgI~s~~da~~~l~ 227 (376)
+.++. ++.+++.|+|++.+..-. +...+ ...-++++.++.+.. ++||+ .| |--.+++.+.++.+
T Consensus 87 ~ai~~-a~~a~~~Gadav~~~pP~--y~~~s-------~~~i~~~f~~v~~a~-~~pvilYn~~g~~l~~~~~~~La~ 153 (296)
T TIGR03249 87 DAIEI-ARLAEKAGADGYLLLPPY--LINGE-------QEGLYAHVEAVCEST-DLGVIVYQRDNAVLNADTLERLAD 153 (296)
T ss_pred HHHHH-HHHHHHhCCCEEEECCCC--CCCCC-------HHHHHHHHHHHHhcc-CCCEEEEeCCCCCCCHHHHHHHHh
Confidence 55543 456678999999886521 11100 011245666666653 78865 33 32345666666653
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >cd00423 Pterin_binding Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=87.35 E-value=1.6 Score=41.01 Aligned_cols=61 Identities=21% Similarity=0.232 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEE
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSV 139 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~v 139 (376)
.+++...+-|+...+.|+|.||||+++..+.... -+.....+.+..+|+.+++.++.|+++
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~-----~~~~~E~~rl~~~v~~l~~~~~~piSI 81 (258)
T cd00423 21 LSLDKALEHARRMVEEGADIIDIGGESTRPGAEP-----VSVEEELERVIPVLRALAGEPDVPISV 81 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCc-----CCHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 3677777778878888999999998765442111 111234467888899998877888877
|
This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH. |
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=87.28 E-value=6.2 Score=38.45 Aligned_cols=154 Identities=11% Similarity=0.143 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCC-------CCCccccCCCCccccccCCHHH----HHHHHHHHhcc--cCccEEEEec
Q 017176 76 LDNLAKATELANAYNYDEINLNCG-------CPSPKVAGHGCFGVSLMLDPKF----VGEAMSVIAAN--TNVPVSVKCR 142 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~g-------cP~~~v~r~g~yG~~l~~~~~~----~~eiv~~v~~~--~~~pv~vKiR 142 (376)
.....+..+.+.++||.+|.+-.= -|.+.+.+..+ ..+++|..-+ +...++.+++. .+.|+.+-+-
T Consensus 58 ~~~~~~~~~~~~~~G~Gavv~ktit~~~~~gn~~pr~~~~~~-~~~~~n~~g~~n~g~~~~~~~l~~~~~~~~plivsi~ 136 (327)
T cd04738 58 FDKNAEAIDALLALGFGFVEVGTVTPRPQPGNPKPRLFRLPE-DEALINRMGFNNDGADAVAKRLKKRRPRGGPLGVNIG 136 (327)
T ss_pred CCCCHHHHHHHHHCCCcEEEEeccCCCCCCCCCCCCEEEccC-ccceeecCCCCCccHHHHHHHHHHhccCCCeEEEEEe
Confidence 334456666767899999998543 23333222111 1122222111 23333333322 4678888773
Q ss_pred CCCCC--CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC----CCeEEE--ec
Q 017176 143 IGVDD--HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP----DLTFTL--NG 214 (376)
Q Consensus 143 ~g~~~--~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~----~ipVi~--nG 214 (376)
-.-.. ....++.++.+.++ . .++|+|.+.-.-....|... ...+....+.+.++++... ++||++ .-
T Consensus 137 g~~~~~~~~~~~d~~~~~~~~-~-~~ad~ielN~scP~~~g~~~---~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~ 211 (327)
T cd04738 137 KNKDTPLEDAVEDYVIGVRKL-G-PYADYLVVNVSSPNTPGLRD---LQGKEALRELLTAVKEERNKLGKKVPLLVKIAP 211 (327)
T ss_pred CCCCCcccccHHHHHHHHHHH-H-hhCCEEEEECCCCCCCcccc---ccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCC
Confidence 32111 11234444433322 2 24899888532221112110 0111111344455554431 277764 33
Q ss_pred CCC--CHHHHHHHHH-cCcCeeEE
Q 017176 215 GIN--TVDEVNAALR-KGAHHVMV 235 (376)
Q Consensus 215 gI~--s~~da~~~l~-~Gad~Vmi 235 (376)
+.. +...+.++++ .|+|+|.+
T Consensus 212 ~~~~~~~~~ia~~l~~aGad~I~~ 235 (327)
T cd04738 212 DLSDEELEDIADVALEHGVDGIIA 235 (327)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEE
Confidence 332 3344444454 89999875
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=87.22 E-value=28 Score=33.24 Aligned_cols=156 Identities=15% Similarity=0.072 Sum_probs=90.9
Q ss_pred cCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEE
Q 017176 60 FSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSV 139 (376)
Q Consensus 60 ~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~v 139 (376)
......|+++++.. +.++-.+.++.++++|+|++-+- .|.-. . ...+.+.+-.+.|.+++++|+.+
T Consensus 70 ~~~g~~pvi~gv~~-~t~~ai~~a~~a~~~Gadav~~~--pP~y~-------~----~s~~~i~~~f~~v~~a~~~pvil 135 (296)
T TIGR03249 70 TAKGKVPVYTGVGG-NTSDAIEIARLAEKAGADGYLLL--PPYLI-------N----GEQEGLYAHVEAVCESTDLGVIV 135 (296)
T ss_pred HhCCCCcEEEecCc-cHHHHHHHHHHHHHhCCCEEEEC--CCCCC-------C----CCHHHHHHHHHHHHhccCCCEEE
Confidence 34456799999975 68888899999999999999873 24321 1 13466777888888888899888
Q ss_pred EecCCCCCCccHHHHHHHHHHHhhc-CCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecC-C
Q 017176 140 KCRIGVDDHDSYNQLCDFIYKVSSL-SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGG-I 216 (376)
Q Consensus 140 KiR~g~~~~~~~~~~~~~i~~~~e~-~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGg-I 216 (376)
--+.|.+- +.+ + +.++.++ -.+..|--+.+ +...+.++++... ++ .|.+|. .
T Consensus 136 Yn~~g~~l--~~~-~---~~~La~~~~nvvgiKds~~------------------d~~~~~~~~~~~~~~~-~v~~G~~~ 190 (296)
T TIGR03249 136 YQRDNAVL--NAD-T---LERLADRCPNLVGFKDGIG------------------DMEQMIEITQRLGDRL-GYLGGMPT 190 (296)
T ss_pred EeCCCCCC--CHH-H---HHHHHhhCCCEEEEEeCCC------------------CHHHHHHHHHHcCCCe-EEEeCCCc
Confidence 66665432 222 2 2333332 23444433221 1344445544433 33 344442 2
Q ss_pred CCHHHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhC
Q 017176 217 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256 (376)
Q Consensus 217 ~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 256 (376)
. -..+...+..|++|++.|-+-+ .|.++.+.++....|
T Consensus 191 ~-d~~~~~~~~~Ga~G~is~~~n~-~P~~~~~~~~~~~~g 228 (296)
T TIGR03249 191 A-EVTAPAYLPLGVTSYSSAIFNF-IPHIARAFYEALRRG 228 (296)
T ss_pred c-hhhHHHHHhCCCCEEEecHHHh-hHHHHHHHHHHHHcC
Confidence 1 2234455667999999885533 466655444443344
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >TIGR00284 dihydropteroate synthase-related protein | Back alignment and domain information |
|---|
Probab=87.18 E-value=3.6 Score=42.50 Aligned_cols=50 Identities=20% Similarity=0.257 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEE
Q 017176 77 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 140 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vK 140 (376)
+...+-|+...+.|+|.||||+++..+ .++.+..+|+++++.++.|++|-
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st~p--------------~~~~v~~~V~~l~~~~~~pISID 214 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSFDD--------------DPDVVKEKVKTALDALDSPVIAD 214 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCC--------------cHHHHHHHHHHHHhhCCCcEEEe
Confidence 555666666778899999999765422 23468899999988778898883
|
This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803. |
| >KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.18 E-value=5.1 Score=36.46 Aligned_cols=38 Identities=24% Similarity=0.359 Sum_probs=34.1
Q ss_pred CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017176 207 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 207 ~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
++-+++-.||+|++|+....+.|+.+|.+|..++..-+
T Consensus 237 Dvilva~SGi~tpdDia~~q~~GV~avLVGEslmk~sD 274 (289)
T KOG4201|consen 237 DVILVALSGIFTPDDIAKYQKAGVKAVLVGESLMKQSD 274 (289)
T ss_pred ceEEEeccCCCCHHHHHHHHHcCceEEEecHHHHhccC
Confidence 67789999999999999999999999999999996533
|
|
| >TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1 | Back alignment and domain information |
|---|
Probab=87.17 E-value=17 Score=33.02 Aligned_cols=142 Identities=16% Similarity=0.092 Sum_probs=73.5
Q ss_pred CCEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEec
Q 017176 65 HPIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCR 142 (376)
Q Consensus 65 ~p~~vQL~-g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR 142 (376)
.++++-+- +--++....+++.+.++|+|.+.+|... | .+-+...++..++.- .+-+.+.++
T Consensus 50 ~~v~lD~K~~Dig~t~~~~~~~~~~~gad~vTvh~~~-----------g------~~~l~~~~~~~~~~~~~v~~v~~ls 112 (213)
T TIGR01740 50 KLIFLDLKFADIPNTVKLQYESKIKQGADMVNVHGVA-----------G------SESVEAAKEAASEGGRGLLAVTELT 112 (213)
T ss_pred CCEEEEEeecchHHHHHHHHHHHHhcCCCEEEEcCCC-----------C------HHHHHHHHHHhhcCCCeEEEEEcCC
Confidence 35666653 2224455556666778999999998421 2 233445555544321 111222222
Q ss_pred -CCCCC-CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHH
Q 017176 143 -IGVDD-HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVD 220 (376)
Q Consensus 143 -~g~~~-~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~ 220 (376)
.+..+ ...+.+.+-.+++...+.|++.+..++ +.+..+++...+ .++..+||.-..
T Consensus 113 s~~~~~~~~~~~~~v~~~a~~~~~~g~~g~v~~~---------------------~~~~~ir~~~~~-~~~vtPGI~~~g 170 (213)
T TIGR01740 113 SMGSLDYGEDTMEKVLEYAKEAKAFGLDGPVCSA---------------------EEAKEIRKFTGD-FLILTPGIRLQS 170 (213)
T ss_pred CCChhhhCcCHHHHHHHHHHHhhhcCCeEEEeCH---------------------HHHHHHHHhcCC-ceEEeCCcCCCC
Confidence 22111 112222222234444556776654221 122333333333 468888886331
Q ss_pred --H--------HHHHHHcCcCeeEEchHHhhCCch
Q 017176 221 --E--------VNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 221 --d--------a~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
. +..+.+.|+|.+.+||+++..+..
T Consensus 171 ~~~~dq~~~~~~~~~~~~Gad~iVvGr~I~~~~d~ 205 (213)
T TIGR01740 171 KGADDQQRVVTLEDAKEAGADVIIVGRGIYAAEDP 205 (213)
T ss_pred CCcCCccccCCHHHHHHcCCCEEEEChhhcCCCCH
Confidence 1 255667899999999999887764
|
This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein. |
| >cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP) | Back alignment and domain information |
|---|
Probab=87.16 E-value=22 Score=31.87 Aligned_cols=122 Identities=15% Similarity=0.194 Sum_probs=65.2
Q ss_pred EecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCC
Q 017176 70 QIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDH 148 (376)
Q Consensus 70 QL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~ 148 (376)
+++|-... +-++.+.+.|+|.|-+-+-.+++. . -+++.+.++.+.+.... .++|++ +
T Consensus 2 KiCGi~~~---ed~~~a~~~Gvd~ig~i~~~~s~R-----~------v~~~~a~~l~~~~~~~~~~V~v~v------n-- 59 (203)
T cd00405 2 KICGITTL---EDALAAAEAGADAIGFIFAPKSPR-----Y------VSPEQAREIVAALPPFVKRVGVFV------N-- 59 (203)
T ss_pred EECCCCCH---HHHHHHHHcCCCEEEEecCCCCCC-----C------CCHHHHHHHHHhCCCCCcEEEEEe------C--
Confidence 45664322 234556678999998875333221 1 24566777766665422 344444 1
Q ss_pred ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHH--HH
Q 017176 149 DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNA--AL 226 (376)
Q Consensus 149 ~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~--~l 226 (376)
++.+++. .++.+.|+|.|++|+... .+.+.++.+.. +.++|-.=++.+..+... ..
T Consensus 60 ~~~~~i~----~ia~~~~~d~Vqlhg~e~-----------------~~~~~~l~~~~-~~~~i~~i~~~~~~~~~~~~~~ 117 (203)
T cd00405 60 EDLEEIL----EIAEELGLDVVQLHGDES-----------------PEYCAQLRARL-GLPVIKAIRVKDEEDLEKAAAY 117 (203)
T ss_pred CCHHHHH----HHHHhcCCCEEEECCCCC-----------------HHHHHHHHhhc-CCcEEEEEecCChhhHHHhhhc
Confidence 2233332 334578999999997531 22344444433 445553334555555443 23
Q ss_pred HcCcCeeEE
Q 017176 227 RKGAHHVMV 235 (376)
Q Consensus 227 ~~Gad~Vmi 235 (376)
..++|.+.+
T Consensus 118 ~~~aD~il~ 126 (203)
T cd00405 118 AGEVDAILL 126 (203)
T ss_pred cccCCEEEE
Confidence 368999865
|
Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes. |
| >cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase | Back alignment and domain information |
|---|
Probab=87.06 E-value=15 Score=36.75 Aligned_cols=146 Identities=15% Similarity=0.102 Sum_probs=86.7
Q ss_pred CCCCEEEEec----CCCHHHHHHHHHHHHHCCCCEEE--ecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCcc
Q 017176 63 EQHPIVLQIG----GSNLDNLAKATELANAYNYDEIN--LNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 136 (376)
Q Consensus 63 ~~~p~~vQL~----g~~~~~~~~aa~~~~~~G~d~Ie--iN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~p 136 (376)
.++|++..+. |-+|+.+++.+..+...|.|.|- =|+..+. =+-+..|.+.+.+.+++..+.++..
T Consensus 122 ~~RPL~~tiiKP~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~---------~~p~~eRv~a~~~a~~~a~~eTG~~ 192 (391)
T cd08209 122 HDRPLLMSIFKGVLGLDLDDLAEQLREQALGGVDLIKDDEILFDNP---------LAPALERIRACRPVLQEVYEQTGRR 192 (391)
T ss_pred CCCceEEeeeccccCCCHHHHHHHHHHHHhCCCCcccccccCCCCC---------CCCHHHHHHHHHHHHHHHHHhhCCc
Confidence 5788888876 66899999999988888988872 2222111 1123345566666666666667654
Q ss_pred EEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhh-CCCCeEEE---
Q 017176 137 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD-FPDLTFTL--- 212 (376)
Q Consensus 137 v~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~-~~~ipVi~--- 212 (376)
...-..+ .. +.+++.+... .+.+.|+.++.+..-+. | +..+..+.+. ..++||.+
T Consensus 193 ~~ya~Ni--T~--~~~em~~ra~-~~~~~G~~~~mv~~~~~---G-------------~~~l~~l~~~~~~~lpIhaHra 251 (391)
T cd08209 193 TLYAVNL--TG--PVFTLKEKAR-RLVEAGANALLFNVFAY---G-------------LDVLEALASDPEINVPIFAHPA 251 (391)
T ss_pred ceEEEEc--CC--CHHHHHHHHH-HHHHhCCCEEEEecccc---c-------------hHHHHHHHhcCcCCcEEEecCC
Confidence 3322222 22 2455655433 34569999888765331 2 4445555553 12677763
Q ss_pred -ec--------CCCCHHHHHHHHH-cCcCeeEEchH
Q 017176 213 -NG--------GINTVDEVNAALR-KGAHHVMVGRA 238 (376)
Q Consensus 213 -nG--------gI~s~~da~~~l~-~Gad~VmiGRa 238 (376)
.| ||...--..++.+ .|+|.+.++..
T Consensus 252 ~~ga~~~~~~~Gis~~~~l~kl~RLaGaD~~~~~~~ 287 (391)
T cd08209 252 FAGALYGSPDYGIAASVLLGTLMRLAGADAVLFPSP 287 (391)
T ss_pred cccccccCCCCCCcHHHHHHHHHHHcCCCccccCCc
Confidence 23 3333234455566 89999988875
|
Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine. |
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=87.01 E-value=1.4 Score=43.65 Aligned_cols=43 Identities=16% Similarity=0.289 Sum_probs=36.6
Q ss_pred cccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017176 192 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 192 ~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
.+.|+.+..+++.. +.|||.-| |.+++|+..+++.|||+|.++
T Consensus 222 ~~~w~~i~~ir~~~-~~pviiKg-V~~~eda~~a~~~G~d~I~VS 264 (361)
T cd04736 222 SFNWQDLRWLRDLW-PHKLLVKG-IVTAEDAKRCIELGADGVILS 264 (361)
T ss_pred cCCHHHHHHHHHhC-CCCEEEec-CCCHHHHHHHHHCCcCEEEEC
Confidence 34688888888876 77888875 999999999999999999873
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional | Back alignment and domain information |
|---|
Probab=86.91 E-value=11 Score=36.72 Aligned_cols=52 Identities=17% Similarity=0.298 Sum_probs=35.1
Q ss_pred HHHHH-HHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017176 82 ATELA-NAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 82 aa~~~-~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
-|++. +++|+|.|+||+....+. +++ ..++.+.++++.|.+.+++|+.|-..
T Consensus 80 ~Ak~q~~~~GAd~Idl~~~s~dp~--~~d-------~~~~e~~~~Vk~V~eavd~PL~Id~s 132 (319)
T PRK04452 80 WAKKCVEEYGADMITLHLISTDPN--GKD-------KSPEEAAKTVEEVLQAVDVPLIIGGS 132 (319)
T ss_pred HHHHHHHHhCCCEEEEECCCCCcc--ccc-------chHHHHHHHHHHHHHhCCCCEEEecC
Confidence 34444 489999999996433221 112 23567888999998889999987433
|
|
| >cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III | Back alignment and domain information |
|---|
Probab=86.82 E-value=34 Score=34.60 Aligned_cols=197 Identities=13% Similarity=0.121 Sum_probs=106.7
Q ss_pred cCCCCChHHHHHHH--HHhCCCcEEE-ecceeecccccccchhhhhh----c-cCCCC--CCEEEEecCCCHHHHHHHHH
Q 017176 15 PMMDWTDNHYRTLA--RLISKHAWLY-TEMLAAETIIYQQGNLDRFL----A-FSPEQ--HPIVLQIGGSNLDNLAKATE 84 (376)
Q Consensus 15 PM~~~td~~~r~~~--~~~Gg~gl~~-te~v~~~~~~~~~~~~~~~~----~-~~~~~--~p~~vQL~g~~~~~~~~aa~ 84 (376)
|=.|.|..+++.++ ...||++++= -|.+....+..-.+...... + ..+.+ .-..++|.+.+++++.+-++
T Consensus 141 P~~Glsp~~~a~~~y~~~~GGiD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~~~~~em~~ra~ 220 (414)
T cd08206 141 PKLGLSPKEYARVVYEALRGGLDFVKDDENQNSQPFMRFEDRILFVAEAMDKAEAETGEAKGHYLNITADTPEEMIKRAE 220 (414)
T ss_pred cccCCCHHHHHHHHHHHHhcCCcccccCccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEeccCCCcHHHHHHHHH
Confidence 65688889998876 4668888763 23233222222111111111 1 11223 34788998888999999999
Q ss_pred HHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcc---cCccEEEEecCCCCC-------CccHHHH
Q 017176 85 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN---TNVPVSVKCRIGVDD-------HDSYNQL 154 (376)
Q Consensus 85 ~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~---~~~pv~vKiR~g~~~-------~~~~~~~ 154 (376)
.+.++|..++-+|.. ..+|. .++++++. .++|+-. .|.++.- .-+.
T Consensus 221 ~~~~~G~~~~mv~~~--------~~G~~------------~l~~l~~~~~~~~l~ih~-HrA~~ga~~~~~~~Gis~--- 276 (414)
T cd08206 221 FAKELGSVIVMVDGV--------TAGWT------------AIQSARRWCPDNGLALHA-HRAGHAAFTRQKNHGISM--- 276 (414)
T ss_pred HHHHhCCcEEEEeee--------cccHH------------HHHHHHHhccccCeEEEE-ccccceecccCCCCcCcH---
Confidence 999999999888741 11222 23444442 3455533 2332211 1112
Q ss_pred HHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhh--------------C---CC-CeEEEecCC
Q 017176 155 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD--------------F---PD-LTFTLNGGI 216 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~--------------~---~~-ipVi~nGgI 216 (376)
..+.++..-+|+|.+++.+-.....+. . .........+... . .. .| +.+||+
T Consensus 277 -~vl~kl~RLaGaD~ih~~t~~Gk~~~~---~-----~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~k~~~P-v~sGG~ 346 (414)
T cd08206 277 -RVLAKLARLIGVDHIHTGTVVGKLEGD---P-----SEVKGIADMLREDEVEGDLSRIFFNQDWGGMKPVFP-VASGGL 346 (414)
T ss_pred -HHHHHHHHHcCCCccccCCCccCCCCC---H-----HHHHHHHHHhhcccccCCccccccccccccCCCcEE-ecCCcc
Confidence 124566667899998764321111110 0 0001111111111 1 11 33 456777
Q ss_pred CCHHHHHHHHH-cCcCe-eEEchHHhhCCchh
Q 017176 217 NTVDEVNAALR-KGAHH-VMVGRAAYQNPWYT 246 (376)
Q Consensus 217 ~s~~da~~~l~-~Gad~-VmiGRa~l~~P~lf 246 (376)
++..+.++++ .|-|. +++|-|+++.|+=.
T Consensus 347 -~~~~~p~~~~~~G~Dvil~~GGGi~gHP~G~ 377 (414)
T cd08206 347 -HPGRMPALIEILGDDVILQFGGGTHGHPDGP 377 (414)
T ss_pred -ChhHHHHHHHHhCCceEEecCCceecCCCCh
Confidence 7888888888 89884 45788999999863
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues. |
| >PLN02561 triosephosphate isomerase | Back alignment and domain information |
|---|
Probab=86.80 E-value=15 Score=34.52 Aligned_cols=43 Identities=14% Similarity=0.232 Sum_probs=32.2
Q ss_pred CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchhhHhhh
Q 017176 207 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 251 (376)
Q Consensus 207 ~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~ 251 (376)
+++|+.-|+|....+.+-+...++||+.||++.|. |. |...++
T Consensus 204 ~i~ILYGGSV~~~N~~~l~~~~~iDG~LVG~ASL~-~~-F~~ii~ 246 (253)
T PLN02561 204 TTRIIYGGSVTGANCKELAAQPDVDGFLVGGASLK-PE-FIDIIK 246 (253)
T ss_pred cceEEEeCCcCHHHHHHHhcCCCCCeEEEehHhhH-HH-HHHHHH
Confidence 68999999996555554444489999999999998 55 655443
|
|
| >PRK12656 fructose-6-phosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=86.74 E-value=11 Score=34.73 Aligned_cols=144 Identities=14% Similarity=0.113 Sum_probs=79.9
Q ss_pred hhccCCCCCCEEEEecCCCHHHHHHHHHHHH-HCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCc
Q 017176 57 FLAFSPEQHPIVLQIGGSNLDNLAKATELAN-AYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135 (376)
Q Consensus 57 ~~~~~~~~~p~~vQL~g~~~~~~~~aa~~~~-~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~ 135 (376)
+.+.-+.+.|+.+|+++.+.+.+.+-|+++. ..| +-+-+ =.|. +.. | .+.++.+.+. ++
T Consensus 47 i~~~i~~~~~vs~ev~~~~~~~mi~eA~~l~~~~~-~nv~V--KIP~-----T~~-G----------l~Ai~~L~~~-Gi 106 (222)
T PRK12656 47 VREIIGDEASIHVQVVAQDYEGILKDAHEIRRQCG-DDVYI--KVPV-----TPA-G----------LAAIKTLKAE-GY 106 (222)
T ss_pred HHHHhCCCCcEEEEEEECCHHHHHHHHHHHHHHhC-CCEEE--EeCC-----CHH-H----------HHHHHHHHHC-CC
Confidence 3344445678999999999999999999886 455 21222 1232 222 3 2333333322 55
Q ss_pred cEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEc-cCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEec
Q 017176 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH-SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 214 (376)
Q Consensus 136 pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh-~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nG 214 (376)
++.+-.= -+..+.. ++.++|+++|..- ||-.. .|..+ . .....+.++.+....-.-|...
T Consensus 107 ~vn~T~i------fs~~Qa~-----~Aa~aGa~yvsPyvgRi~d-~g~D~-----~--~~i~~i~~~~~~~~~~tkILaA 167 (222)
T PRK12656 107 HITATAI------YTVFQGL-----LAIEAGADYLAPYYNRMEN-LNIDS-----N--AVIGQLAEAIDRENSDSKILAA 167 (222)
T ss_pred ceEEeee------CCHHHHH-----HHHHCCCCEEecccchhhh-cCCCH-----H--HHHHHHHHHHHhcCCCCEEEEE
Confidence 5554211 1233321 2235999997764 44321 12111 0 0022223333332223457778
Q ss_pred CCCCHHHHHHHHHcCcCeeEEchHH
Q 017176 215 GINTVDEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 215 gI~s~~da~~~l~~Gad~VmiGRa~ 239 (376)
.+++++++.++...|||.|-+.=.+
T Consensus 168 S~r~~~~v~~a~~~G~d~vTvp~~v 192 (222)
T PRK12656 168 SFKNVAQVNKAFALGAQAVTAGPDV 192 (222)
T ss_pred ecCCHHHHHHHHHcCCCEEecCHHH
Confidence 9999999999999999999885433
|
|
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=86.71 E-value=17 Score=33.62 Aligned_cols=78 Identities=17% Similarity=0.118 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQ 153 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~ 153 (376)
+.++..+.++.+.++|+|.||+-.+.|.+.+ .++.+ ..++++.+++.. +.++.+=+|.+ .+
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~--------p~~~~---~~~~i~~l~~~~~~~~~~~l~~~~-------~~ 78 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVGSGASPKAV--------PQMED---DWEVLRAIRKLVPNVKLQALVRNR-------EK 78 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCcCcccc--------ccCCC---HHHHHHHHHhccCCcEEEEEccCc-------hh
Confidence 5788888999999999999999887765432 12222 345566666544 45555544443 11
Q ss_pred HHHHHHHHhhcCCccEEEEcc
Q 017176 154 LCDFIYKVSSLSPTRHFIIHS 174 (376)
Q Consensus 154 ~~~~i~~~~e~~Gvd~I~vh~ 174 (376)
.+ . .+.++|++.|.+..
T Consensus 79 ~i---~-~a~~~g~~~i~i~~ 95 (265)
T cd03174 79 GI---E-RALEAGVDEVRIFD 95 (265)
T ss_pred hH---H-HHHhCCcCEEEEEE
Confidence 11 2 23368999998864
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I | Back alignment and domain information |
|---|
Probab=86.60 E-value=22 Score=36.23 Aligned_cols=196 Identities=16% Similarity=0.248 Sum_probs=106.2
Q ss_pred cCCCCChHHHHHHH--HHhCCCcEEE-ecceeecccccccchhhhhh----c-cCCCCC--CEEEEecCCCHHHHHHHHH
Q 017176 15 PMMDWTDNHYRTLA--RLISKHAWLY-TEMLAAETIIYQQGNLDRFL----A-FSPEQH--PIVLQIGGSNLDNLAKATE 84 (376)
Q Consensus 15 PM~~~td~~~r~~~--~~~Gg~gl~~-te~v~~~~~~~~~~~~~~~~----~-~~~~~~--p~~vQL~g~~~~~~~~aa~ 84 (376)
|-.|.+..++..++ ...||++++= -|......+..-.+...... + ..+.+. -..++|.+.+++++.+-++
T Consensus 154 P~iGlsp~~~A~~~~~~~~GGvD~IKDDE~l~~~~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~NiTa~~~~em~~ra~ 233 (450)
T cd08212 154 PKLGLSAKNYGRVVYECLRGGLDFTKDDENINSQPFMRWRDRFLFVAEAVNKAQAETGEVKGHYLNVTAGTMEEMYKRAE 233 (450)
T ss_pred CccCCCHHHHHHHHHHHHccCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeeccccCCCHHHHHHHHH
Confidence 65788999998876 3567777663 22332222221111111111 1 122332 3578998888999999999
Q ss_pred HHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhc---ccCccEEEEecCCCCC-------CccHHHH
Q 017176 85 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA---NTNVPVSVKCRIGVDD-------HDSYNQL 154 (376)
Q Consensus 85 ~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~---~~~~pv~vKiR~g~~~-------~~~~~~~ 154 (376)
++.++|...+-+|+ +. +|.+ ++++++ ..++|+-. .|.++.- .-+.
T Consensus 234 ~a~~~G~~~~mv~~------~~---G~~~------------l~~l~~~a~~~~l~Iha-HrA~~ga~~r~~~~Gis~--- 288 (450)
T cd08212 234 FAKELGSPIIMHDL------LT---GFTA------------IQSLAKWCRDNGMLLHL-HRAGHATYDRQKNHGIHF--- 288 (450)
T ss_pred HHHHhCCCeEeeec------cc---ccch------------HHHHHHHhhhcCceEEe-ccccceecccCccCCcCH---
Confidence 99999999988874 11 2331 223322 24566543 2333211 1112
Q ss_pred HHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhh---------------C---C-CCeEEEecC
Q 017176 155 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD---------------F---P-DLTFTLNGG 215 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~---------------~---~-~ipVi~nGg 215 (376)
..+.+++.-+|+|.+++.+-.....+. . .........+... . . -+|| .+||
T Consensus 289 -~vl~kl~RLaGaD~ih~~t~~Gk~~~~---~-----~~~~~~~~~~~~~~~~~d~~~~~~~~q~~~~~k~~~Pv-~sGG 358 (450)
T cd08212 289 -RVLAKWLRLSGVDHIHAGTVVGKLEGD---P-----LVTLGFYDLLRDDYIEKDRSRGIFFTQDWASLPGVMPV-ASGG 358 (450)
T ss_pred -HHHHHHHHHcCCCccccCCCcCCcCCC---H-----HHHHHHHHHHhhhhcccccccccccccccccCCCceEe-cCCC
Confidence 123556666899998876432111111 0 0001111111110 1 1 2443 4566
Q ss_pred CCCHHHHHHHHH-cCcCe-eEEchHHhhCCchh
Q 017176 216 INTVDEVNAALR-KGAHH-VMVGRAAYQNPWYT 246 (376)
Q Consensus 216 I~s~~da~~~l~-~Gad~-VmiGRa~l~~P~lf 246 (376)
+ ++..+.++++ .|.|. +++|-|+++.|+=.
T Consensus 359 ~-~~~~vp~~~~~~G~Dvil~~GGGi~gHP~G~ 390 (450)
T cd08212 359 I-HVGQMHQLIEIFGDDVVLQFGGGTIGHPWGI 390 (450)
T ss_pred C-CHHHHHHHHHhcCCceEEecCcceecCCCCh
Confidence 6 7888888888 89884 45789999999864
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits. |
| >COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.50 E-value=1.6 Score=40.83 Aligned_cols=74 Identities=19% Similarity=0.116 Sum_probs=58.1
Q ss_pred HHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEch
Q 017176 158 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGR 237 (376)
+++..+++|+++|.|-......+|. ++.+..++.. +++||..=-=|.|+-++.++...|||+|.+=-
T Consensus 71 ia~~Ye~~GAa~iSVLTd~~~F~Gs------------~e~L~~v~~~-v~~PvL~KDFiiD~yQI~~Ar~~GADavLLI~ 137 (254)
T COG0134 71 IAKAYEEGGAAAISVLTDPKYFQGS------------FEDLRAVRAA-VDLPVLRKDFIIDPYQIYEARAAGADAVLLIV 137 (254)
T ss_pred HHHHHHHhCCeEEEEecCccccCCC------------HHHHHHHHHh-cCCCeeeccCCCCHHHHHHHHHcCcccHHHHH
Confidence 3566788999999987655444442 7778777665 49999999999999999999999999998766
Q ss_pred HHhhCCc
Q 017176 238 AAYQNPW 244 (376)
Q Consensus 238 a~l~~P~ 244 (376)
++|.+-.
T Consensus 138 ~~L~~~~ 144 (254)
T COG0134 138 AALDDEQ 144 (254)
T ss_pred HhcCHHH
Confidence 6665553
|
|
| >TIGR03586 PseI pseudaminic acid synthase | Back alignment and domain information |
|---|
Probab=86.48 E-value=15 Score=35.91 Aligned_cols=132 Identities=17% Similarity=0.206 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccc---------cCCCCccc----cccCCHHHHHHHHHHH---hcccCccEE
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKV---------AGHGCFGV----SLMLDPKFVGEAMSVI---AANTNVPVS 138 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v---------~r~g~yG~----~l~~~~~~~~eiv~~v---~~~~~~pv~ 138 (376)
+.+...+.++.+.++|+|+|-+..=.+..-+ .+.+.|.+ .+.+..++-.+..+.+ .+..++++.
T Consensus 15 ~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~~~ 94 (327)
T TIGR03586 15 SLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELGLTIF 94 (327)
T ss_pred hHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhCCcEE
Confidence 4555556667778899999887643221100 01112221 0112222222222222 344566664
Q ss_pred EEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCC
Q 017176 139 VKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 218 (376)
Q Consensus 139 vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s 218 (376)
.- -++. . -+++ +++.|++.+-|..+... ++.++..+.+. +.|||..-|..|
T Consensus 95 st---pfd~-~----svd~----l~~~~v~~~KI~S~~~~---------------n~~LL~~va~~--gkPvilstG~~t 145 (327)
T TIGR03586 95 SS---PFDE-T----AVDF----LESLDVPAYKIASFEIT---------------DLPLIRYVAKT--GKPIIMSTGIAT 145 (327)
T ss_pred Ec---cCCH-H----HHHH----HHHcCCCEEEECCcccc---------------CHHHHHHHHhc--CCcEEEECCCCC
Confidence 41 1221 1 2222 34689999998876531 26777777663 899999988899
Q ss_pred HHHHHHHHH----cCcCeeEE
Q 017176 219 VDEVNAALR----KGAHHVMV 235 (376)
Q Consensus 219 ~~da~~~l~----~Gad~Vmi 235 (376)
.+++..+++ .|+.-|++
T Consensus 146 ~~Ei~~Av~~i~~~g~~~i~L 166 (327)
T TIGR03586 146 LEEIQEAVEACREAGCKDLVL 166 (327)
T ss_pred HHHHHHHHHHHHHCCCCcEEE
Confidence 999887775 56744554
|
|
| >CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit | Back alignment and domain information |
|---|
Probab=86.38 E-value=19 Score=37.03 Aligned_cols=198 Identities=15% Similarity=0.159 Sum_probs=0.0
Q ss_pred cCCCCChHHHHHHH--HHhCCCcEEE-ecceeecccccccchhhhhhc------cCCCCCCE-EEEecCCCHHHHHHHHH
Q 017176 15 PMMDWTDNHYRTLA--RLISKHAWLY-TEMLAAETIIYQQGNLDRFLA------FSPEQHPI-VLQIGGSNLDNLAKATE 84 (376)
Q Consensus 15 PM~~~td~~~r~~~--~~~Gg~gl~~-te~v~~~~~~~~~~~~~~~~~------~~~~~~p~-~vQL~g~~~~~~~~aa~ 84 (376)
|-.|.|..++..++ ...||+++|= -|.+....+..-.+......+ -...++++ .++|.+.+++++.+-++
T Consensus 176 P~~GLsp~~~A~~~y~~~~GGvD~IKDDE~l~dq~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiTa~~~~em~~ra~ 255 (475)
T CHL00040 176 PKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMYKRAV 255 (475)
T ss_pred cccCCCHHHHHHHHHHHHcCCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeeeccCCCCHHHHHHHHH
Q ss_pred HHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhc---ccCccEEEEecCCCCCCcc-----HHHHHH
Q 017176 85 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA---NTNVPVSVKCRIGVDDHDS-----YNQLCD 156 (376)
Q Consensus 85 ~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~---~~~~pv~vKiR~g~~~~~~-----~~~~~~ 156 (376)
++.++|..++-+|. .+..-+. ++.+++ ..++|+-. .|.++.-... +.-.+
T Consensus 256 ~a~e~G~~~~mv~~-----~~~G~~a---------------l~~l~~~~~~~~l~Iha-HrA~~ga~~r~~~~Gis~~v- 313 (475)
T CHL00040 256 FARELGVPIVMHDY-----LTGGFTA---------------NTSLAHYCRDNGLLLHI-HRAMHAVIDRQKNHGIHFRV- 313 (475)
T ss_pred HHHHcCCceEEEec-----cccccch---------------HHHHHHHhhhcCceEEe-ccccccccccCccCCCcHHH-
Q ss_pred HHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC------------------CCCeEEEecCCCC
Q 017176 157 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF------------------PDLTFTLNGGINT 218 (376)
Q Consensus 157 ~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~------------------~~ipVi~nGgI~s 218 (376)
+.++..-+|+|.+++.+-.....|..... ......+.... ..+-=+.+||+ +
T Consensus 314 -l~KL~RLaGaD~ih~~t~~gk~~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~q~~~~~k~~~Pv~SGG~-~ 383 (475)
T CHL00040 314 -LAKALRMSGGDHIHAGTVVGKLEGEREMT--------LGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPVASGGI-H 383 (475)
T ss_pred -HHHHHHHcCCCccccCCcccCCCCCHHHH--------HHHHHHHHhhhhhccccccccccccccCCCCceEecCCCC-C
Q ss_pred HHHHHHHHH-cCcC-eeEEchHHhhCCc
Q 017176 219 VDEVNAALR-KGAH-HVMVGRAAYQNPW 244 (376)
Q Consensus 219 ~~da~~~l~-~Gad-~VmiGRa~l~~P~ 244 (376)
+..+.++++ .|-| .+++|-|+++.|+
T Consensus 384 ~g~vp~~~~~~G~Dvil~aGGGi~gHPd 411 (475)
T CHL00040 384 VWHMPALTEIFGDDSVLQFGGGTLGHPW 411 (475)
T ss_pred HHHHHHHHHHhCCCeeEecCcceecCCC
|
|
| >TIGR03247 glucar-dehydr glucarate dehydratase | Back alignment and domain information |
|---|
Probab=86.37 E-value=21 Score=36.37 Aligned_cols=122 Identities=12% Similarity=0.072 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHH-HHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHH
Q 017176 75 NLDNLAKATELA-NAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~-~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~ 152 (376)
+++++.+-|+.. ++.||..+-+..|-+ +++.-.+.|+++|+.+ ++.+.|-.--+|+ .+
T Consensus 180 ~~e~~~~~a~~~~~~~Gf~a~KiKvG~~----------------~~~~Di~~v~avRea~~d~~L~vDAN~~wt----~~ 239 (441)
T TIGR03247 180 TPEAVVRLAEAAYDRYGFRDFKLKGGVL----------------RGEEEIEAVTALAKRFPQARITLDPNGAWS----LD 239 (441)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEecCCC----------------ChHHHHHHHHHHHHhCCCCeEEEECCCCCC----HH
Confidence 567776666544 346999998854321 1244466778888765 2333333333343 34
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCccc----HHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK----YEYYYALLRDFPDLTFTLNGGINTVDEVNAALR- 227 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~----~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~- 227 (376)
+.++++ +.+++. +.+|. ..+++-+ ++.++++++. .++||.+.=.+.+..++..+++
T Consensus 240 ~Ai~~~-~~Le~~-~~~iE----------------ePv~~~d~~~~~~~la~Lr~~-~~iPIa~dEs~~~~~~~~~li~~ 300 (441)
T TIGR03247 240 EAIALC-KDLKGV-LAYAE----------------DPCGAEQGYSGREVMAEFRRA-TGLPTATNMIATDWRQMGHALQL 300 (441)
T ss_pred HHHHHH-HHhhhh-hceEe----------------CCCCcccccchHHHHHHHHHh-CCCCEEcCCccCCHHHHHHHHHh
Confidence 444443 334444 44432 0112222 5556677665 4899988778899999999998
Q ss_pred cCcCeeEE
Q 017176 228 KGAHHVMV 235 (376)
Q Consensus 228 ~Gad~Vmi 235 (376)
..+|.+++
T Consensus 301 ~avdi~~~ 308 (441)
T TIGR03247 301 QAVDIPLA 308 (441)
T ss_pred CCCCEEec
Confidence 55777554
|
Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized. |
| >TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase | Back alignment and domain information |
|---|
Probab=86.30 E-value=28 Score=33.57 Aligned_cols=128 Identities=10% Similarity=0.116 Sum_probs=74.8
Q ss_pred EEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCC
Q 017176 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD 147 (376)
Q Consensus 68 ~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~ 147 (376)
...|...+++.+.+.+.. +.||..+-+..| . .+++.-.+.|+++++.++- .+++|+....
T Consensus 104 ~~~l~~~~~~~~~~~~~~--~~Gf~~~KiKvG-------------~---~~~~~d~~~v~~vr~~~g~--~~~l~vDaN~ 163 (307)
T TIGR01927 104 VALLPAGDPALLLLRSAK--AEGFRTFKWKVG-------------V---GELAREGMLVNLLLEALPD--KAELRLDANG 163 (307)
T ss_pred eeeccCCCHHHHHHHHHH--hCCCCEEEEEeC-------------C---CChHHHHHHHHHHHHHcCC--CCeEEEeCCC
Confidence 344545667766554443 678888876332 1 1355556778888876632 3344443222
Q ss_pred CccHHHHHHHHHHHhhc---CCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHH
Q 017176 148 HDSYNQLCDFIYKVSSL---SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNA 224 (376)
Q Consensus 148 ~~~~~~~~~~i~~~~e~---~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~ 224 (376)
.-+..+..+++. .+++ .++.+|. . .++. .+.+.++.+. .++||.+.=.+.+.+|+.+
T Consensus 164 ~w~~~~A~~~~~-~l~~~~~~~i~~iE----q------------P~~~--~~~~~~l~~~-~~~Pia~dEs~~~~~d~~~ 223 (307)
T TIGR01927 164 GLSPDEAQQFLK-ALDPNLRGRIAFLE----E------------PLPD--ADEMSAFSEA-TGTAIALDESLWELPQLAD 223 (307)
T ss_pred CCCHHHHHHHHH-hcccccCCCceEEe----C------------CCCC--HHHHHHHHHh-CCCCEEeCCCcCChHHHHH
Confidence 223344444433 3454 5566654 0 0111 2445566555 4899999888999999999
Q ss_pred HHHcC-cCeeEE
Q 017176 225 ALRKG-AHHVMV 235 (376)
Q Consensus 225 ~l~~G-ad~Vmi 235 (376)
+++.+ +|.|++
T Consensus 224 ~~~~~~~d~i~i 235 (307)
T TIGR01927 224 EYGPGWRGALVI 235 (307)
T ss_pred HHhcCCCceEEE
Confidence 99844 577765
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error. |
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=86.15 E-value=3.7 Score=39.22 Aligned_cols=84 Identities=8% Similarity=0.036 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHH---
Q 017176 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAAL--- 226 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l--- 226 (376)
.+.+.+.+..+ .+.|++.|.+-|-+......+..+ +.+.+...++.. .++|||+.-+- +.+++.+..
T Consensus 20 ~~~l~~l~~~l-~~~Gv~gi~v~GstGE~~~Ls~eE-------r~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a 90 (289)
T cd00951 20 EDAYRAHVEWL-LSYGAAALFAAGGTGEFFSLTPDE-------YAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAA 90 (289)
T ss_pred HHHHHHHHHHH-HHcCCCEEEECcCCcCcccCCHHH-------HHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHH
Confidence 44444444433 468999999988765433222111 123344444433 26899876555 555554443
Q ss_pred -HcCcCeeEEchHHhhCC
Q 017176 227 -RKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 227 -~~Gad~VmiGRa~l~~P 243 (376)
+.|||++|+-...+..|
T Consensus 91 ~~~Gad~v~~~pP~y~~~ 108 (289)
T cd00951 91 EKAGADGILLLPPYLTEA 108 (289)
T ss_pred HHhCCCEEEECCCCCCCC
Confidence 27999999977766554
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=86.14 E-value=2.1 Score=40.44 Aligned_cols=54 Identities=13% Similarity=0.206 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEE
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 140 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vK 140 (376)
.+.+...+-|+...+.|+|.||||++.+. ...++.+..+|+.+++.++.|+++-
T Consensus 22 ~d~~~i~~~A~~~~~~GAdiIDVg~~~~~-------------~eE~~r~~~~v~~l~~~~~~plsID 75 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADYLDVNAGTAV-------------EEEPETMEWLVETVQEVVDVPLCID 75 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCc-------------hhHHHHHHHHHHHHHHhCCCCEEEe
Confidence 45666777777777889999999987321 2347789999999988888998873
|
|
| >PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=86.14 E-value=13 Score=35.30 Aligned_cols=107 Identities=18% Similarity=0.159 Sum_probs=0.0
Q ss_pred cccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCC
Q 017176 112 GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191 (376)
Q Consensus 112 G~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~ 191 (376)
|+.++++.+++.+ ...++.||.+|=-.. .+.+++...+.++.. .|-..|.+--|.... |+.. .
T Consensus 113 gAr~~rntdLL~a-----~~~t~kpV~lKrGqf----~s~~e~~~aae~i~~-~Gn~~vilcERG~~f-gy~~------~ 175 (281)
T PRK12457 113 PAFLARQTDLVVA-----IAKTGKPVNIKKPQF----MSPTQMKHVVSKCRE-AGNDRVILCERGSSF-GYDN------L 175 (281)
T ss_pred CchhhchHHHHHH-----HhccCCeEEecCCCc----CCHHHHHHHHHHHHH-cCCCeEEEEeCCCCC-CCCC------c
Q ss_pred cccHHHHHHHHhhCCCCeEEEecCCC-----------------CHHHHHHHHHcCcCeeEE
Q 017176 192 PLKYEYYYALLRDFPDLTFTLNGGIN-----------------TVDEVNAALRKGAHHVMV 235 (376)
Q Consensus 192 ~~~~~~v~~~~~~~~~ipVi~nGgI~-----------------s~~da~~~l~~Gad~Vmi 235 (376)
.++...+..+++..+++|||..-.=. =+.-+..++..||||+|+
T Consensus 176 ~~D~~~ip~mk~~~t~lPVi~DpSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaDGl~i 236 (281)
T PRK12457 176 VVDMLGFRQMKRTTGDLPVIFDVTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAGLFL 236 (281)
T ss_pred ccchHHHHHHHhhCCCCCEEEeCCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEE
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 376 | ||||
| 3b0p_A | 350 | Trna-Dihydrouridine Synthase From Thermus Thermophi | 7e-54 | ||
| 3b0v_C | 363 | Trna-Dihydrouridine Synthase From Thermus Thermophi | 3e-50 | ||
| 1vhn_A | 318 | Crystal Structure Of A Putative Flavin Oxidoreducta | 7e-12 |
| >pdb|3B0P|A Chain A, Trna-Dihydrouridine Synthase From Thermus Thermophilus Length = 350 | Back alignment and structure |
|
| >pdb|3B0V|C Chain C, Trna-Dihydrouridine Synthase From Thermus Thermophilus In Complex With Trna Length = 363 | Back alignment and structure |
|
| >pdb|1VHN|A Chain A, Crystal Structure Of A Putative Flavin Oxidoreductase With Flavin Length = 318 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* Length = 350 | Back alignment and structure |
|---|
Score = 446 bits (1149), Expect = e-158
Identities = 118/345 (34%), Positives = 182/345 (52%), Gaps = 14/345 (4%)
Query: 7 LPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHP 66
L P SVAPM+D TD H+R L R +S LYTEM + ++ GN +R LAF PE+HP
Sbjct: 2 LDPRLSVAPMVDRTDRHFRFLVRQVSLGVRLYTEMTVDQAVLR--GNRERLLAFRPEEHP 59
Query: 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 126
I LQ+ GS+ +LA+A + A+ YDEINLN GCPS K G +G L+LD V E +
Sbjct: 60 IALQLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKA-QEGGYGACLLLDLARVREIL 118
Query: 127 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE 186
+ VPV+VK R+G++ ++Y L + ++ + + F++H+R ALL +S
Sbjct: 119 KAMGEAVRVPVTVKMRLGLEGKETYRGLAQSVEAMAE-AGVKVFVVHARSALL-ALSTKA 176
Query: 187 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 246
NR IPPL++++ + L DFP LTF NGGI +++E L K VM+GRA Y++P+
Sbjct: 177 NREIPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHL-KRVDGVMLGRAVYEDPFV- 234
Query: 247 LGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGN 306
L D ++G P +R +V + + Y + + V++ +L+ F P
Sbjct: 235 LEEADRRVFGLPRR-PSRLEVARRMRAYLEEEVLKGT----PPWAVLRHMLNLFRGRPKG 289
Query: 307 GLFKRK--ADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRG 349
L++R + Q +EE + + P +
Sbjct: 290 RLWRRLLSEGRSLQALDRALRLMEEEVGEEGEKEKPGPRGQREAA 334
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 Length = 318 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 1e-32
Identities = 57/239 (23%), Positives = 106/239 (44%), Gaps = 33/239 (13%)
Query: 13 VAPMMDWTDNHYRTLARLISKH--AWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
+APM +TD+ +RTLA + + ++EM++A+ + + L P + + +Q
Sbjct: 9 LAPMAGYTDSAFRTLAF---EWGADFAFSEMVSAKGFLMNSQKTEELLPQ-PHERNVAVQ 64
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
I GS + L++A + + Y I+LN GCP KV G G +L+ D + + +
Sbjct: 65 IFGSEPNELSEAARI-LSEKYKWIDLNAGCPVRKVVKEGA-GGALLKDLRHFRYIVRELR 122
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYK--VSSLSPTRHFIIH--SRKALLNGISPAE 186
+ + SVK R+G + + ++ + + V + IH + G AE
Sbjct: 123 KSVSGKFSVKTRLGWEK-NEVEEIYRILVEEGVDEVF------IHTRTVVQSFTG--RAE 173
Query: 187 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPW 244
+ + L+ + P ++G I T ++ AL + G ++V R A PW
Sbjct: 174 WKALSVLE--------KRIP---TFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPW 221
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 1e-04
Identities = 47/292 (16%), Positives = 87/292 (29%), Gaps = 107/292 (36%)
Query: 62 PEQ----HPIVLQIGGSNL-DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSL- 115
P + +P L I ++ D LA + N D++ + SL
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKH-VNCDKLT--------TI-----IESSLN 364
Query: 116 MLDPK-----FVGEAMSVIAANTNVPVSVKCR-----IGVDDHDSYNQLCDFIYKVSSL- 164
+L+P F + +SV + ++P + I D N+L SL
Sbjct: 365 VLEPAEYRKMF--DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-----YSLV 417
Query: 165 ---SPTRHFIIHS---------------RKALLNGISPAE----NRTIPPLKYEYYYALL 202
I S +++++ + + + IPP +Y+Y+ +
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 203 RDFPDLTFTLNGGINTVDEVNAALRKGAHHV----MVGRAAYQNPWYT--------LGHV 250
HH+ R + + H
Sbjct: 478 ---------------------------GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHS 302
TA + A S L Q ++ Y+ Y I +N P ++ +L F
Sbjct: 511 STA-WNASGSILNTLQQLKFYKPY---IC----DNDPKYERLVNAILDFLPK 554
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 4e-04
Identities = 42/280 (15%), Positives = 73/280 (26%), Gaps = 76/280 (27%)
Query: 120 KFVGEAMSVIAANTN-----VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS 174
KFV E + N P+ + R Y + D +Y + + + S
Sbjct: 81 KFVEEVL-----RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV---S 132
Query: 175 RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG--GI-NTVDEVNAALRKGAH 231
R + R ALL P ++G G T
Sbjct: 133 RLQPYLKL-----RQ----------ALLELRPAKNVLIDGVLGSGKTW-VALDVCLSYKV 176
Query: 232 HVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTR-----RQVVEKYQIYGDAILGTYGNNR 286
+ + W L + ++ P + L Q+ + D N +
Sbjct: 177 QCKMDFKIF---WLNLKNCNS-----PETVLEMLQKLLYQIDPNWTSRSDHSS----NIK 224
Query: 287 PHVRDVMKPLLHFFHSEPG-NGLF-------KRKADAAFQ-TCKTV-----KSFLEETIV 332
+ + L S+P N L + + AF +CK + K T
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN-AFNLSCKILLTTRFKQV---TDF 280
Query: 333 AIPDSVLDSPIEEAPRG-----REDLFADVHDL----LPP 363
+ ++ + L D LP
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* Length = 311 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 32/221 (14%), Positives = 63/221 (28%), Gaps = 61/221 (27%)
Query: 57 FLAFSPEQHPIVLQIGGSNLD---NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGV 113
+ ++ PI I G + + K + ++ E+NL+C P V G
Sbjct: 86 NQKENAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSC----PNVPGEPQLAY 141
Query: 114 SLMLDPKFVGEAMSVIAANTNVPVSVK-------------CRIGVDDHDSYNQLCDFIYK 160
D + + + + P+ VK I ++
Sbjct: 142 ----DFEATEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFP------LTYVNS 191
Query: 161 VSSLSPTRHFIIHSRKALLNGISPAENRTI------PPLK-------YEYYYALLRDFPD 207
V+S+ + ++ + + +K +Y L +
Sbjct: 192 VNSIGNGLFIDPEAESVVI------KPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQ- 244
Query: 208 LTFTLN----GGINTVDEVNAALRKGAHHVMVGRAA-YQNP 243
GGI T + L GA + +G A + P
Sbjct: 245 ------IIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGP 279
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* Length = 311 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 4e-04
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 56 RFLAFSPEQHPIVLQIGGSNL-DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVS 114
+L + + PI+ + GS D +A ++ +A N I LN CP+ K G FG
Sbjct: 90 PWLNENFPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQA-FGT- 147
Query: 115 LMLDPKFVGEAMSVIAANTNVPVSVK 140
DP+ + A + VP+ VK
Sbjct: 148 ---DPEVAAALVKACKAVSKVPLYVK 170
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 376 | |||
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 100.0 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 100.0 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 100.0 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 100.0 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 100.0 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 100.0 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 100.0 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 100.0 | |
| 2hsa_B | 402 | 12-oxophytodienoate reductase 3; alpha beta 8 barr | 100.0 | |
| 1icp_A | 376 | OPR1, 12-oxophytodienoate reductase 1; beta-alpha- | 100.0 | |
| 3l5a_A | 419 | NADH/flavin oxidoreductase/NADH oxidase; OLD yello | 100.0 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 100.0 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 100.0 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 100.0 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 100.0 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 100.0 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 100.0 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 100.0 | |
| 3tjl_A | 407 | NADPH dehydrogenase; OLD yellow enzyme, flavin mon | 99.98 | |
| 3aty_A | 379 | Tcoye, prostaglandin F2A synthase; alpha/beta barr | 99.98 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 99.97 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 99.97 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 99.97 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 99.97 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 99.97 | |
| 4a3u_A | 358 | NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET | 99.96 | |
| 4gbu_A | 400 | NADPH dehydrogenase 1; alpha/beta barrel, enenone | 99.96 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 99.96 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 99.96 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 99.96 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 99.95 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 99.94 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 99.92 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 99.91 | |
| 3tjx_A | 354 | Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh | 99.9 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 99.9 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 99.89 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 99.89 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 99.86 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 99.85 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 99.82 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 99.79 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 99.79 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 99.78 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 99.77 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 99.77 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 99.76 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 99.75 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 99.74 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 99.7 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 99.66 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 99.64 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 99.58 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 99.58 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 99.58 | |
| 2yzr_A | 330 | Pyridoxal biosynthesis lyase PDXS; redox protein, | 99.5 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 99.5 | |
| 3o07_A | 291 | Pyridoxine biosynthesis protein SNZ1; (beta/alpha) | 99.46 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 99.45 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 99.42 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 99.41 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 99.4 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 99.3 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 99.29 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 99.23 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 99.22 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 99.21 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 99.18 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 99.17 | |
| 2uva_G | 2060 | Fatty acid synthase beta subunits; fungal, dehydra | 99.16 | |
| 2qjg_A | 273 | Putative aldolase MJ0400; beta-alpha barrel, lyase | 99.16 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 99.15 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 99.11 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 99.1 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 99.09 | |
| 2nv1_A | 305 | Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b | 99.09 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 99.08 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 99.04 | |
| 2pgw_A | 384 | Muconate cycloisomerase; enolase superfamily, octa | 99.03 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 99.03 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 99.01 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 98.98 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 98.98 | |
| 1xm3_A | 264 | Thiazole biosynthesis protein THIG; structural gen | 98.92 | |
| 1ofd_A | 1520 | Ferredoxin-dependent glutamate synthase 2; oxidore | 98.87 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 98.85 | |
| 2uv8_G | 2051 | Fatty acid synthase subunit beta (FAS1); fatty aci | 98.84 | |
| 1ea0_A | 1479 | Glutamate synthase [NADPH] large chain; oxidoreduc | 98.83 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 98.83 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 98.77 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 98.74 | |
| 1mdl_A | 359 | Mandelate racemase; isomerase, mandelate pathway, | 98.71 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 98.71 | |
| 2ovl_A | 371 | Putative racemase; structural genomics, PSI-2, pro | 98.71 | |
| 2gl5_A | 410 | Putative dehydratase protein; structural genomics, | 98.71 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 98.7 | |
| 2rdx_A | 379 | Mandelate racemase/muconate lactonizing enzyme, P; | 98.68 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 98.68 | |
| 1rvk_A | 382 | Isomerase/lactonizing enzyme; enolase superfamily, | 98.66 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 98.65 | |
| 2p8b_A | 369 | Mandelate racemase/muconate lactonizing enzyme fam | 98.65 | |
| 2htm_A | 268 | Thiazole biosynthesis protein THIG; thiamin biosyn | 98.65 | |
| 2nql_A | 388 | AGR_PAT_674P, isomerase/lactonizing enzyme; enolas | 98.63 | |
| 2poz_A | 392 | Putative dehydratase; octamer, structural genomics | 98.61 | |
| 2qdd_A | 378 | Mandelate racemase/muconate lactonizing enzyme; en | 98.59 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 98.59 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 98.57 | |
| 2hzg_A | 401 | Mandelate racemase/muconate lactonizing enzyme/EN | 98.57 | |
| 3eez_A | 378 | Putative mandelate racemase/muconate lactonizing e | 98.55 | |
| 2ps2_A | 371 | Putative mandelate racemase/muconate lactonizing e | 98.54 | |
| 1nu5_A | 370 | Chloromuconate cycloisomerase; enzyme, dehalogenat | 98.52 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 98.52 | |
| 1tkk_A | 366 | Similar to chloromuconate cycloisomerase; epimeras | 98.49 | |
| 2qgy_A | 391 | Enolase from the environmental genome shotgun sequ | 98.48 | |
| 3ozy_A | 389 | Putative mandelate racemase; beta-alpha barrel, en | 98.48 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 98.47 | |
| 3vk5_A | 286 | MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S | 98.46 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 98.45 | |
| 2qq6_A | 410 | Mandelate racemase/muconate lactonizing enzyme- li | 98.44 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 98.42 | |
| 2ox4_A | 403 | Putative mandelate racemase; enolase, dehydratase, | 98.42 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 98.42 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 98.41 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 98.41 | |
| 2og9_A | 393 | Mandelate racemase/muconate lactonizing enzyme; NY | 98.4 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 98.37 | |
| 2oz8_A | 389 | MLL7089 protein; structural genomics, unknown func | 98.35 | |
| 2qde_A | 397 | Mandelate racemase/muconate lactonizing enzyme FA | 98.35 | |
| 3stp_A | 412 | Galactonate dehydratase, putative; PSI biology, st | 98.34 | |
| 3rcy_A | 433 | Mandelate racemase/muconate lactonizing enzyme-LI | 98.32 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 98.32 | |
| 2pp0_A | 398 | L-talarate/galactarate dehydratase; enolase superf | 98.32 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 98.31 | |
| 2o56_A | 407 | Putative mandelate racemase; dehydratase, structur | 98.31 | |
| 2cu0_A | 486 | Inosine-5'-monophosphate dehydrogenase; structural | 98.28 | |
| 3vzx_A | 228 | Heptaprenylglyceryl phosphate synthase; biosynthes | 98.27 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 98.26 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 98.24 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 98.24 | |
| 3sjn_A | 374 | Mandelate racemase/muconate lactonizing protein; e | 98.23 | |
| 2gdq_A | 382 | YITF; mandelate racemase/muconate lactonizing enzy | 98.22 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 98.22 | |
| 1tzz_A | 392 | Hypothetical protein L1841; structural genomics, m | 98.21 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 98.2 | |
| 3ndo_A | 231 | Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid | 98.19 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 98.17 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 98.17 | |
| 3bjs_A | 428 | Mandelate racemase/muconate lactonizing enzyme; en | 98.16 | |
| 3rr1_A | 405 | GALD, putative D-galactonate dehydratase; enolase, | 98.16 | |
| 2p10_A | 286 | MLL9387 protein; putative phosphonopyruvate hydrol | 98.15 | |
| 3ngj_A | 239 | Deoxyribose-phosphate aldolase; lyase, structural | 98.14 | |
| 3r12_A | 260 | Deoxyribose-phosphate aldolase; TIM beta/alpha-bar | 98.13 | |
| 2zad_A | 345 | Muconate cycloisomerase; muconate lactonizing enzy | 98.13 | |
| 2hxt_A | 441 | L-fuconate dehydratase; enolase superfamily, D-ery | 98.11 | |
| 2f6u_A | 234 | GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy | 98.1 | |
| 1viz_A | 240 | PCRB protein homolog; structural genomics, unknown | 98.1 | |
| 4dwd_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 98.08 | |
| 3sbf_A | 401 | Mandelate racemase / muconate lactonizing enzyme; | 98.07 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 98.07 | |
| 4e5t_A | 404 | Mandelate racemase / muconate lactonizing enzyme, | 98.05 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 98.04 | |
| 1ub3_A | 220 | Aldolase protein; schiff base, deoxyribose phospha | 98.03 | |
| 3r4e_A | 418 | Mandelate racemase/muconate lactonizing enzyme; en | 98.03 | |
| 3i4k_A | 383 | Muconate lactonizing enzyme; structural genomics, | 98.02 | |
| 1w8s_A | 263 | FBP aldolase, fructose-bisphosphate aldolase class | 98.02 | |
| 3jva_A | 354 | Dipeptide epimerase; enolase superfamily, isomeras | 98.02 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 98.0 | |
| 4e4u_A | 412 | Mandalate racemase/muconate lactonizing enzyme; ma | 97.97 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 97.97 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 97.96 | |
| 3ro6_B | 356 | Putative chloromuconate cycloisomerase; TIM barrel | 97.96 | |
| 3w01_A | 235 | Heptaprenylglyceryl phosphate synthase; biosynthes | 97.93 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 97.92 | |
| 1sjd_A | 368 | N-acylamino acid racemase; lyase, isomerase; HET: | 97.9 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 97.88 | |
| 3tji_A | 422 | Mandelate racemase/muconate lactonizing enzyme, N | 97.87 | |
| 1yad_A | 221 | Regulatory protein TENI; TIM barrel, transcription | 97.81 | |
| 3tj4_A | 372 | Mandelate racemase; enolase, dehydratase, enzyme f | 97.8 | |
| 1ujp_A | 271 | Tryptophan synthase alpha chain; riken structural | 97.8 | |
| 3cwo_X | 237 | Beta/alpha-barrel protein based on 1THF and 1TMY; | 97.79 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 97.78 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 97.76 | |
| 4a29_A | 258 | Engineered retro-aldol enzyme RA95.0; de novo prot | 97.76 | |
| 3ddm_A | 392 | Putative mandelate racemase/muconate lactonizing e | 97.76 | |
| 3gd6_A | 391 | Muconate cycloisomerase; structural genomics, NYSG | 97.74 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 97.74 | |
| 3q45_A | 368 | Mandelate racemase/muconate lactonizing enzyme FA | 97.73 | |
| 3my9_A | 377 | Muconate cycloisomerase; structural genomics, PSI- | 97.72 | |
| 3v3w_A | 424 | Starvation sensing protein RSPA; enolase, enzyme f | 97.71 | |
| 3ugv_A | 390 | Enolase; enzyme function initiative, EFI, lyase; 2 | 97.69 | |
| 1chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Ralstonia eu | 97.68 | |
| 3toy_A | 383 | Mandelate racemase/muconate lactonizing enzyme FA | 97.66 | |
| 3dg3_A | 367 | Muconate cycloisomerase; muconate lactonizing enzy | 97.64 | |
| 3vcn_A | 425 | Mannonate dehydratase; enolase, magnesium binding | 97.64 | |
| 3glc_A | 295 | Aldolase LSRF; TIM barrel, lyase, schiff base; HET | 97.64 | |
| 3t6c_A | 440 | RSPA, putative MAND family dehydratase; enolase, m | 97.62 | |
| 1r0m_A | 375 | N-acylamino acid racemase; isomerase; 1.30A {Deino | 97.62 | |
| 3go2_A | 409 | Putative L-alanine-DL-glutamate epimerase; structu | 97.61 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 97.61 | |
| 1n7k_A | 234 | Deoxyribose-phosphate aldolase; A.pernix, tetramer | 97.6 | |
| 3fv9_G | 386 | Mandelate racemase/muconate lactonizing enzyme; st | 97.59 | |
| 3i6e_A | 385 | Muconate cycloisomerase I; structural genomics, NY | 97.58 | |
| 4e4f_A | 426 | Mannonate dehydratase; magnesium binding, enzyme f | 97.58 | |
| 1tqx_A | 227 | D-ribulose-5-phosphate 3-epimerase, putative; stru | 97.57 | |
| 2zc8_A | 369 | N-acylamino acid racemase; octamer, TIM beta/alpha | 97.56 | |
| 1i4n_A | 251 | Indole-3-glycerol phosphate synthase; thermostable | 97.54 | |
| 1to3_A | 304 | Putative aldolase YIHT; beta-alpha barrel, structu | 97.54 | |
| 1xi3_A | 215 | Thiamine phosphate pyrophosphorylase; structural g | 97.53 | |
| 3mqt_A | 394 | Mandelate racemase/muconate lactonizing protein; P | 97.52 | |
| 3r0u_A | 379 | Enzyme of enolase superfamily; structural genomics | 97.5 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 97.5 | |
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 97.5 | |
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 97.48 | |
| 2czd_A | 208 | Orotidine 5'-phosphate decarboxylase; pyrimidine b | 97.48 | |
| 3p3b_A | 392 | Mandelate racemase/muconate lactonizing protein; e | 97.45 | |
| 2tps_A | 227 | Protein (thiamin phosphate synthase); thiamin bios | 97.45 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 97.44 | |
| 3mkc_A | 394 | Racemase; metabolic process, PSI2, NYSGXRC, struct | 97.43 | |
| 3tcs_A | 388 | Racemase, putative; PSI-biology, nysgrc, structura | 97.39 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 97.35 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 97.34 | |
| 3mwc_A | 400 | Mandelate racemase/muconate lactonizing protein; e | 97.29 | |
| 2a4a_A | 281 | Deoxyribose-phosphate aldolase; lyase, TIM beta/al | 97.28 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 97.27 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 97.21 | |
| 1vcv_A | 226 | Probable deoxyribose-phosphate aldolase; DERA, hyp | 97.21 | |
| 3dgb_A | 382 | Muconate cycloisomerase; muconate lactonizing enzy | 97.21 | |
| 3lye_A | 307 | Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre | 97.13 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 97.1 | |
| 4e8g_A | 391 | Enolase, mandelate racemase/muconate lactonizing e | 97.1 | |
| 1p1x_A | 260 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 97.08 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 97.02 | |
| 3ceu_A | 210 | Thiamine phosphate pyrophosphorylase; TIM barrel-l | 96.97 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 96.96 | |
| 3fcp_A | 381 | L-Ala-D/L-Glu epimerase, A muconate lactonizing en | 96.93 | |
| 4a35_A | 441 | Mitochondrial enolase superfamily member 1; isomer | 96.92 | |
| 4hnl_A | 421 | Mandelate racemase/muconate lactonizing enzyme; de | 96.91 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 96.9 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 96.87 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 96.86 | |
| 3ik4_A | 365 | Mandelate racemase/muconate lactonizing protein; s | 96.85 | |
| 1qap_A | 296 | Quinolinic acid phosphoribosyltransferase; glycosy | 96.84 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 96.82 | |
| 3fa4_A | 302 | 2,3-dimethylmalate lyase; alpha/beta barrel, helix | 96.74 | |
| 3cu2_A | 237 | Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib | 96.73 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 96.71 | |
| 3dip_A | 410 | Enolase; structural genomics, isomerase, PSI-2, pr | 96.7 | |
| 4eiv_A | 297 | Deoxyribose-phosphate aldolase; chemotherapy, brai | 96.65 | |
| 1q6o_A | 216 | Humps, 3-keto-L-gulonate 6-phosphate decarboxylase | 96.6 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 96.54 | |
| 3kts_A | 192 | Glycerol uptake operon antiterminator regulatory; | 96.54 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 96.53 | |
| 3nl6_A | 540 | Thiamine biosynthetic bifunctional enzyme; thiamin | 96.5 | |
| 1oy0_A | 281 | Ketopantoate hydroxymethyltransferase; domain swap | 96.33 | |
| 2b7n_A | 273 | Probable nicotinate-nucleotide pyrophosphorylase; | 96.3 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 96.26 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 96.26 | |
| 2h6r_A | 219 | Triosephosphate isomerase; beta-alpha barrel; 2.30 | 96.23 | |
| 4dye_A | 398 | Isomerase; enolase family protein, EFI, enzym func | 96.18 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 96.17 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 96.16 | |
| 4dxk_A | 400 | Mandelate racemase / muconate lactonizing enzyme p | 96.15 | |
| 3ve9_A | 215 | Orotidine-5'-phosphate decarboxylase; TIM barrel f | 96.08 | |
| 1o66_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 96.02 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 96.01 | |
| 1x1o_A | 286 | Nicotinate-nucleotide pyrophosphorylase; transfera | 95.98 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 95.93 | |
| 1m3u_A | 264 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 95.9 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 95.89 | |
| 3iv3_A | 332 | Tagatose 1,6-diphosphate aldolase 2; TIM barrel, p | 95.88 | |
| 3exr_A | 221 | RMPD (hexulose-6-phosphate synthase); beta barrel, | 95.85 | |
| 3ru6_A | 303 | Orotidine 5'-phosphate decarboxylase; structural g | 95.85 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 95.83 | |
| 2jbm_A | 299 | Nicotinate-nucleotide pyrophosphorylase; NAD, enzy | 95.82 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 95.76 | |
| 1o66_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 95.75 | |
| 3m47_A | 228 | Orotidine 5'-phosphate decarboxylase; orotidine 5' | 95.66 | |
| 3o1n_A | 276 | 3-dehydroquinate dehydratase; structural genomics, | 95.65 | |
| 3vav_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 95.59 | |
| 2yyu_A | 246 | Orotidine 5'-phosphate decarboxylase; TIM barrel, | 95.58 | |
| 1m3u_A | 264 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 95.47 | |
| 2pge_A | 377 | MENC; OSBS, NYSGXRC, PSI-II, structural genomics, | 95.43 | |
| 1wuf_A | 393 | Hypothetical protein LIN2664; structural genomics, | 95.37 | |
| 2qiw_A | 255 | PEP phosphonomutase; structural genomics, joint ce | 95.33 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 95.26 | |
| 1eix_A | 245 | Orotidine 5'-monophosphate decarboxylase; alpha-be | 95.21 | |
| 1vkf_A | 188 | Glycerol uptake operon antiterminator-related Pro; | 95.2 | |
| 1sfl_A | 238 | 3-dehydroquinate dehydratase; 3-dehydroquinase, en | 95.19 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 95.13 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 95.09 | |
| 1vqt_A | 213 | Orotidine 5'-phosphate decarboxylase; TM0332, stru | 95.08 | |
| 1hg3_A | 225 | Triosephosphate isomerase; thermostability, tetram | 95.04 | |
| 4h3d_A | 258 | 3-dehydroquinate dehydratase; structural genomics, | 94.99 | |
| 1dbt_A | 239 | Orotidine 5'-phosphate decarboxylase; UMP, TIM bar | 94.98 | |
| 4aaj_A | 228 | N-(5'-phosphoribosyl)anthranilate isomerase; alpha | 94.98 | |
| 1oy0_A | 281 | Ketopantoate hydroxymethyltransferase; domain swap | 94.95 | |
| 1o4u_A | 285 | Type II quinolic acid phosphoribosyltransferase; s | 94.88 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 94.84 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 94.8 | |
| 3u9i_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 94.8 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 94.77 | |
| 2yci_X | 271 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 94.74 | |
| 3tr2_A | 239 | Orotidine 5'-phosphate decarboxylase; purines, pyr | 94.72 | |
| 3tfx_A | 259 | Orotidine 5'-phosphate decarboxylase; PSI-biology, | 94.7 | |
| 3c2e_A | 294 | Nicotinate-nucleotide pyrophosphorylase; qprtase, | 94.66 | |
| 3paj_A | 320 | Nicotinate-nucleotide pyrophosphorylase, carboxyl; | 94.57 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 94.54 | |
| 1qpo_A | 284 | Quinolinate acid phosphoribosyl transferase; type | 94.5 | |
| 2chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Cupriavidus | 94.5 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 94.49 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 94.39 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 94.36 | |
| 3s5s_A | 389 | Mandelate racemase/muconate lactonizing enzyme FA | 94.36 | |
| 4dbe_A | 222 | Orotidine 5'-phosphate decarboxylase; TIM barrel, | 94.34 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 94.22 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 94.2 | |
| 3tqv_A | 287 | Nicotinate-nucleotide pyrophosphorylase; glycosylt | 94.05 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 94.03 | |
| 2ozt_A | 332 | TLR1174 protein; structural genomics, O-succinylbe | 94.0 | |
| 1nsj_A | 205 | PRAI, phosphoribosyl anthranilate isomerase; therm | 93.89 | |
| 3ldv_A | 255 | Orotidine 5'-phosphate decarboxylase; structural g | 93.82 | |
| 1v5x_A | 203 | PRA isomerase, phosphoribosylanthranilate isomeras | 93.8 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 93.8 | |
| 2yr1_A | 257 | 3-dehydroquinate dehydratase; amino acid biosynthe | 93.75 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 93.61 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 93.59 | |
| 2wqp_A | 349 | Polysialic acid capsule biosynthesis protein SIAC; | 93.58 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 93.52 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 93.41 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 93.41 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 93.37 | |
| 4h1z_A | 412 | Enolase Q92ZS5; dehydratase, magnesium binding sit | 93.35 | |
| 3cyj_A | 372 | Mandelate racemase/muconate lactonizing enzyme-LI | 93.32 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 93.29 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 93.24 | |
| 4hpn_A | 378 | Putative uncharacterized protein; enolase, enzyme | 93.2 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 93.2 | |
| 1vli_A | 385 | Spore coat polysaccharide biosynthesis protein SP; | 93.15 | |
| 3gnn_A | 298 | Nicotinate-nucleotide pyrophosphorylase; decode bi | 93.09 | |
| 3qld_A | 388 | Mandelate racemase/muconate lactonizing protein; s | 93.07 | |
| 1wue_A | 386 | Mandelate racemase/muconate lactonizing enzyme FA | 93.03 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 92.97 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 92.93 | |
| 3vav_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 92.93 | |
| 3nvt_A | 385 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; | 92.87 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 92.77 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 92.76 | |
| 1o60_A | 292 | 2-dehydro-3-deoxyphosphooctonate aldolase; structu | 92.55 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 92.46 | |
| 1f6y_A | 262 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 92.39 | |
| 3fok_A | 307 | Uncharacterized protein CGL0159; CGL0159 ,brevibac | 92.37 | |
| 3p6l_A | 262 | Sugar phosphate isomerase/epimerase; TIM barrel, s | 92.36 | |
| 1vs1_A | 276 | 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha | 92.34 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 92.25 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 92.25 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 92.24 | |
| 1zco_A | 262 | 2-dehydro-3-deoxyphosphoheptonate aldolase; arabin | 92.19 | |
| 3l0g_A | 300 | Nicotinate-nucleotide pyrophosphorylase; ssgcid, N | 92.16 | |
| 2qiw_A | 255 | PEP phosphonomutase; structural genomics, joint ce | 92.13 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 92.12 | |
| 3va8_A | 445 | Probable dehydratase; enolase, magnesium binding s | 92.1 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 92.05 | |
| 1w0m_A | 226 | TIM, triosephosphate isomerase; glycolysis, glucon | 91.81 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 91.77 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 91.76 | |
| 3g8r_A | 350 | Probable spore coat polysaccharide biosynthesis P; | 91.6 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 91.59 | |
| 3vdg_A | 445 | Probable glucarate dehydratase; enolase, magnesium | 91.56 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 91.56 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 91.55 | |
| 3lye_A | 307 | Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre | 91.54 | |
| 1vr6_A | 350 | Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034 | 91.41 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 91.36 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 91.35 | |
| 3qw3_A | 255 | Orotidine-5-phosphate decarboxylase/orotate phosph | 91.34 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 91.28 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 91.23 | |
| 4h83_A | 388 | Mandelate racemase/muconate lactonizing enzyme; st | 91.22 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 90.99 | |
| 3fa4_A | 302 | 2,3-dimethylmalate lyase; alpha/beta barrel, helix | 90.86 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 90.78 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 90.7 | |
| 3sz8_A | 285 | 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgci | 90.53 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 90.51 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 90.42 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 90.39 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 90.38 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 90.38 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 90.36 | |
| 2a4a_A | 281 | Deoxyribose-phosphate aldolase; lyase, TIM beta/al | 90.23 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 90.22 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 90.14 | |
| 2qkf_A | 280 | 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; | 90.1 | |
| 3ijl_A | 338 | Muconate cycloisomerase; enolase superfamily, dipe | 90.07 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 90.05 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 89.86 | |
| 3vc5_A | 441 | Mandelate racemase/muconate lactonizing protein; d | 89.85 | |
| 1zco_A | 262 | 2-dehydro-3-deoxyphosphoheptonate aldolase; arabin | 89.84 | |
| 1rvg_A | 305 | Fructose-1,6-bisphosphate aldolase; class II aldol | 89.8 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 89.73 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 89.6 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 89.5 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 89.41 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 89.37 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 89.35 | |
| 3p0w_A | 470 | Mandelate racemase/muconate lactonizing protein; s | 89.29 | |
| 3d0c_A | 314 | Dihydrodipicolinate synthase; lysine biosynthesis, | 89.18 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 89.16 | |
| 3qw4_B | 453 | UMP synthase; N-terminal orotidine monophosphate d | 89.16 | |
| 1qwg_A | 251 | PSL synthase;, (2R)-phospho-3-sulfolactate synthas | 89.12 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 89.08 | |
| 3mzn_A | 450 | Glucarate dehydratase; lyase, structural genomics, | 88.97 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 88.84 | |
| 1vr6_A | 350 | Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034 | 88.67 | |
| 3tr9_A | 314 | Dihydropteroate synthase; biosynthesis of cofactor | 88.62 | |
| 3n9r_A | 307 | Fructose-bisphosphate aldolase; FBP aldolase, clas | 88.6 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 88.26 | |
| 4hb7_A | 270 | Dihydropteroate synthase; transferase; 1.95A {Stap | 88.06 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 87.91 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 87.82 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 87.79 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 87.68 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 87.68 | |
| 3gk0_A | 278 | PNP synthase, pyridoxine 5'-phosphate synthase; de | 87.66 | |
| 1vli_A | 385 | Spore coat polysaccharide biosynthesis protein SP; | 87.58 | |
| 3dz1_A | 313 | Dihydrodipicolinate synthase; lysine biosynthesis, | 87.43 | |
| 1aj0_A | 282 | DHPS, dihydropteroate synthase; antibiotic, resist | 87.39 | |
| 3q94_A | 288 | Fructose-bisphosphate aldolase, class II; structur | 87.31 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 87.28 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 87.2 | |
| 1u83_A | 276 | Phosphosulfolactate synthase; structural genomics, | 87.12 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 87.05 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 87.04 | |
| 3fkr_A | 309 | L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f | 87.03 | |
| 2vef_A | 314 | Dihydropteroate synthase; antibiotic resistance, t | 87.01 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 86.98 | |
| 2r91_A | 286 | 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM | 86.96 | |
| 1w3i_A | 293 | EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m | 86.92 | |
| 3i4e_A | 439 | Isocitrate lyase; structural genomics, seattle str | 86.87 | |
| 3qfe_A | 318 | Putative dihydrodipicolinate synthase family PROT; | 86.85 | |
| 2nuw_A | 288 | 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a | 86.83 | |
| 1nsj_A | 205 | PRAI, phosphoribosyl anthranilate isomerase; therm | 86.73 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 86.72 | |
| 4a29_A | 258 | Engineered retro-aldol enzyme RA95.0; de novo prot | 86.68 | |
| 1eye_A | 280 | DHPS 1, dihydropteroate synthase I; alpha-beta bar | 86.64 | |
| 1gvf_A | 286 | Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; | 86.62 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 86.59 | |
| 4h2h_A | 376 | Mandelate racemase/muconate lactonizing enzyme; en | 86.52 | |
| 3cu2_A | 237 | Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib | 86.51 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 86.43 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 86.42 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 86.39 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 86.31 | |
| 3fs2_A | 298 | 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, | 86.29 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 86.27 | |
| 2nuw_A | 288 | 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a | 86.2 | |
| 3dz1_A | 313 | Dihydrodipicolinate synthase; lysine biosynthesis, | 86.13 | |
| 1vs1_A | 276 | 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha | 86.09 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 86.03 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 86.03 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 86.02 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 85.9 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 85.82 | |
| 3lmz_A | 257 | Putative sugar isomerase; structural genomics, joi | 85.79 | |
| 3a5f_A | 291 | Dihydrodipicolinate synthase; TIM barrel, enzyme, | 85.78 | |
| 1w3i_A | 293 | EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m | 85.78 | |
| 1m5w_A | 243 | Pyridoxal phosphate biosynthetic protein PDXJ; TIM | 85.75 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 85.75 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 85.74 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 85.66 | |
| 2isw_A | 323 | Putative fructose-1,6-bisphosphate aldolase; class | 85.55 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 85.4 | |
| 2r91_A | 286 | 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM | 85.34 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 85.23 | |
| 3v5c_A | 392 | Mandelate racemase/muconate lactonizing protein; e | 85.07 | |
| 3pfr_A | 455 | Mandelate racemase/muconate lactonizing protein; e | 85.07 | |
| 2bmb_A | 545 | Folic acid synthesis protein FOL1; folate biosynth | 85.01 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 84.92 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 84.76 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 84.59 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 84.4 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 84.25 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 84.11 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 84.07 | |
| 4dpp_A | 360 | DHDPS 2, dihydrodipicolinate synthase 2, chloropla | 84.02 | |
| 3nvt_A | 385 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; | 83.82 | |
| 3lg3_A | 435 | Isocitrate lyase; conserved, CD, proteomics eviden | 83.7 | |
| 3fkr_A | 309 | L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f | 83.65 | |
| 2q02_A | 272 | Putative cytoplasmic protein; structural genomics, | 83.37 | |
| 3e96_A | 316 | Dihydrodipicolinate synthase; structural genomics, | 83.33 | |
| 3txv_A | 450 | Probable tagatose 6-phosphate kinase; structural g | 82.99 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 82.99 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 82.72 | |
| 3tqp_A | 428 | Enolase; energy metabolism, lyase; 2.20A {Coxiella | 82.64 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 82.54 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 82.52 | |
| 3qfe_A | 318 | Putative dihydrodipicolinate synthase family PROT; | 82.42 | |
| 1tx2_A | 297 | DHPS, dihydropteroate synthase; folate biosynthesi | 82.37 | |
| 3qn3_A | 417 | Enolase; structural genomics, center for structura | 82.36 | |
| 3obe_A | 305 | Sugar phosphate isomerase/epimerase; structural ge | 82.31 |
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-59 Score=454.89 Aligned_cols=315 Identities=35% Similarity=0.625 Sum_probs=264.8
Q ss_pred ecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHHHHHH
Q 017176 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATEL 85 (376)
Q Consensus 6 ~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~aa~~ 85 (376)
.++||+++|||+++||.+||++++++||+|+++|||++++.+++.+. .+++++++.+.|+++||+|++|++|+++|++
T Consensus 1 ~l~nriv~APM~g~td~~~r~~~r~~Gg~gli~te~~~~~~~~~~~~--~~~~~~~~~~~p~~vQL~g~~p~~~~~aA~~ 78 (350)
T 3b0p_A 1 MLDPRLSVAPMVDRTDRHFRFLVRQVSLGVRLYTEMTVDQAVLRGNR--ERLLAFRPEEHPIALQLAGSDPKSLAEAARI 78 (350)
T ss_dssp -CCCSEEECCCTTTSSHHHHHHHHHHCSSSBEECCCEEHHHHHHSCH--HHHHCCCGGGCSEEEEEECSCHHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCHHHHHHHHHHcCCCCEEEeCCEEechhhcCCH--HHHhccCCCCCeEEEEeCCCCHHHHHHHHHH
Confidence 37999999999999999999999999999999999999998766553 3566788899999999999999999999999
Q ss_pred HHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcC
Q 017176 86 ANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLS 165 (376)
Q Consensus 86 ~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~ 165 (376)
++++|||+||||+|||.+++ ++++||++|+++++++.++++++++.+++||++|+|+||++..+.+++.++ ++.++++
T Consensus 79 a~~~G~D~IeIn~gcP~~~~-~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~g~~~~~~~~~~~~~-a~~l~~a 156 (350)
T 3b0p_A 79 GEAFGYDEINLNLGCPSEKA-QEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRLGLEGKETYRGLAQS-VEAMAEA 156 (350)
T ss_dssp HHHTTCSEEEEEECCCSHHH-HHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEESCBTTCCCHHHHHHH-HHHHHHT
T ss_pred HHHcCCCEEEECCcCCCCcC-cCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEecCcCccccHHHHHHH-HHHHHHc
Confidence 99999999999999999864 567899999999999999999999989999999999999886665555554 4566789
Q ss_pred CccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 166 PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 166 Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
|+|+|+||+|+... |.++..++..++..|+++.++++.++++|||+||||.|++|+.++++ |||+|||||+++.|||+
T Consensus 157 G~d~I~V~~r~~~~-g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVianGgI~s~eda~~~l~-GaD~V~iGRa~l~~P~l 234 (350)
T 3b0p_A 157 GVKVFVVHARSALL-ALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLK-RVDGVMLGRAVYEDPFV 234 (350)
T ss_dssp TCCEEEEECSCBC-----------CCCCCHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHT-TSSEEEECHHHHHCGGG
T ss_pred CCCEEEEecCchhc-ccCcccccCCCcccHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-CCCEEEECHHHHhCcHH
Confidence 99999999998642 33333333455677999999988766899999999999999999998 99999999999999999
Q ss_pred hhHhhhhhhhCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCCCChHHHHHHHHHHhhhhhHHH
Q 017176 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKS 325 (376)
Q Consensus 246 f~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y~~~~~~~~~~r~~~~~~~~~~~~~~~ 325 (376)
| .++...++| +.+..++.++++.|++|.+.+++ +|+ .++.+|||+.||++|+|++++||+.+++. .+.+.+.+
T Consensus 235 ~-~~i~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~-~g~---~~~~~~kh~~~~~~g~~~~~~~r~~l~~~-~~~~~~~~ 307 (350)
T 3b0p_A 235 L-EEADRRVFG-LPRRPSRLEVARRMRAYLEEEVL-KGT---PPWAVLRHMLNLFRGRPKGRLWRRLLSEG-RSLQALDR 307 (350)
T ss_dssp G-TTHHHHTTC-CSCCCCHHHHHHHHHHHHHHHHH-HTC---CHHHHHTTSTTTTTTSTTHHHHHHHHHHH-CSHHHHHH
T ss_pred H-HHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHH-cCc---cHHHHHHHHHHHHccCCCHHHHHHHHHCC-CCHHHHHH
Confidence 6 556655666 44557889999999999988777 565 48899999999999999999999998665 66677777
Q ss_pred HHHHHHHh
Q 017176 326 FLEETIVA 333 (376)
Q Consensus 326 ~~~~~~~~ 333 (376)
+++++...
T Consensus 308 ~l~~~~~~ 315 (350)
T 3b0p_A 308 ALRLMEEE 315 (350)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhh
Confidence 77665433
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-55 Score=420.98 Aligned_cols=306 Identities=22% Similarity=0.361 Sum_probs=250.7
Q ss_pred eecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHHHHH
Q 017176 5 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATE 84 (376)
Q Consensus 5 ~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~aa~ 84 (376)
++++||+++|||+++|+.+||.++++.| +|+++|||++++.+.+......+.+ +++.+.|+++||+|++|++|+++|+
T Consensus 1 ~~l~nri~~APM~~~t~~~~r~~~~~~G-~gli~te~~~~~~~~~~~~~~~~~l-~~~~~~~~~~QL~g~~~~~~~~aa~ 78 (318)
T 1vhn_A 1 MSLEVKVGLAPMAGYTDSAFRTLAFEWG-ADFAFSEMVSAKGFLMNSQKTEELL-PQPHERNVAVQIFGSEPNELSEAAR 78 (318)
T ss_dssp ----CEEEECCCTTTCSHHHHHHHHTTT-CCCEECSCEEHHHHHTTCHHHHHHS-CCTTCTTEEEEEECSCHHHHHHHHH
T ss_pred CccCCCEEECCCCCCCcHHHHHHHHHHC-cCEEEeCCEEEcccccCCHhHHHhh-hCcCCCeEEEEeCCCCHHHHHHHHH
Confidence 4689999999999999999999998876 6999999999998776655555555 8889999999999999999999999
Q ss_pred HHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhc
Q 017176 85 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSL 164 (376)
Q Consensus 85 ~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~ 164 (376)
+++++ ||+||||+|||.++ .++++||++|++|++++.++++++++.+++||+||+|+||++.+.. ++ ++.+++
T Consensus 79 ~a~~~-~d~Iein~gcP~~~-~r~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~G~~~~~~~-~~----a~~l~~ 151 (318)
T 1vhn_A 79 ILSEK-YKWIDLNAGCPVRK-VVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVE-EI----YRILVE 151 (318)
T ss_dssp HHTTT-CSEEEEEECCCCHH-HHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEESCSSSCCHH-HH----HHHHHH
T ss_pred HHHHh-CCEEEEECCCCcHh-cCCCCcccchhhCHHHHHHHHHHHHHhhCCCEEEEecCCCChHHHH-HH----HHHHHH
Confidence 99999 99999999999976 4568899999999999999999999999999999999999875433 33 445678
Q ss_pred CCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHhhCC
Q 017176 165 SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNP 243 (376)
Q Consensus 165 ~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P 243 (376)
+|+|+|+||+|+... +.++ +..|+.+.++++ ++|||+||||.|++|+.++++ +|||+||+||+++.||
T Consensus 152 ~G~d~i~v~g~~~~~-~~~~-------~~~~~~i~~i~~---~ipVi~~GgI~s~~da~~~l~~~gad~V~iGR~~l~~P 220 (318)
T 1vhn_A 152 EGVDEVFIHTRTVVQ-SFTG-------RAEWKALSVLEK---RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRP 220 (318)
T ss_dssp TTCCEEEEESSCTTT-TTSS-------CCCGGGGGGSCC---SSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTTCT
T ss_pred hCCCEEEEcCCCccc-cCCC-------CcCHHHHHHHHc---CCeEEEECCcCCHHHHHHHHHcCCCCEEEECHHHHhCc
Confidence 999999999998632 2111 223555555543 899999999999999999999 8999999999999999
Q ss_pred chhhHhhhhhhh-CCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCCCChHHHHHHHHHHhhhhh
Q 017176 244 WYTLGHVDTAIY-GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKT 322 (376)
Q Consensus 244 ~lf~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y~~~~~~~~~~r~~~~~~~~~~~~ 322 (376)
|+| ..+...++ | +.+..++.++++.+.+|.+..++++|. +.++..+|||+.||+++++++++||+++++. ++..+
T Consensus 221 ~l~-~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~ 296 (318)
T 1vhn_A 221 WIF-KQIKDFLRSG-KYSEPSREEILRTFERHLELLIKTKGE-RKAVVEMRKFLAGYTKDLKGARRFREKVMKI-EEVQI 296 (318)
T ss_dssp THH-HHHHHHHHHS-CCCCCCHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHTTHHHHTTTCTTHHHHHHHHTTC-CCHHH
T ss_pred chH-HHHHHHHhCC-CCCCCCHHHHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHhcCCChHHHHHHHHcC-CCHHH
Confidence 997 44544343 6 333456677777777888878888885 5689999999999999999999999988543 66677
Q ss_pred HHHHHHHHHHhC
Q 017176 323 VKSFLEETIVAI 334 (376)
Q Consensus 323 ~~~~~~~~~~~~ 334 (376)
+.++++++++..
T Consensus 297 ~~~~~~~~~~~~ 308 (318)
T 1vhn_A 297 LKEMFYNFIKEV 308 (318)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 777777766544
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=302.02 Aligned_cols=239 Identities=15% Similarity=0.189 Sum_probs=186.5
Q ss_pred CCCeecCCcEEEccCCCC---------ChHHHHHHH-HHhCCCcEEEecceeeccccc---------ccchhh---hhh-
Q 017176 2 VARQYLPPWFSVAPMMDW---------TDNHYRTLA-RLISKHAWLYTEMLAAETIIY---------QQGNLD---RFL- 58 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~---------td~~~r~~~-~~~Gg~gl~~te~v~~~~~~~---------~~~~~~---~~~- 58 (376)
||+++|||||++|||+++ |+..+++|. ++.||+|+++||+++++.... .+..+. ++.
T Consensus 11 ig~~~l~NRiv~aPm~~~~~~~~~g~~~~~~~~~y~~rA~gG~gliite~~~v~~~g~~~~~~~~i~~d~~~~~~~~~~~ 90 (338)
T 1z41_A 11 IKDMTLKNRIVMSPMCMYSSHEKDGKLTPFHMAHYISRAIGQVGLIIVEASAVNPQGRITDQDLGIWSDEHIEGFAKLTE 90 (338)
T ss_dssp ETTEEESSSEEECCCCCCCCTTSSSCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSCBCSSTHHHHHHHHHHH
T ss_pred ECCEEEcCccEECCcCCCcCCCCCCCCCHHHHHHHHHHHcCCCCEEEeCCeeccccccCCCCCcccCCHHHHHHHHHHHH
Confidence 689999999999999865 566778875 566889999999998864321 112221 222
Q ss_pred ccCCCCCCEEEEecCC-----------------------C------------HHHHHHHHHHHHHCCCCEEEecCCC---
Q 017176 59 AFSPEQHPIVLQIGGS-----------------------N------------LDNLAKATELANAYNYDEINLNCGC--- 100 (376)
Q Consensus 59 ~~~~~~~p~~vQL~g~-----------------------~------------~~~~~~aa~~~~~~G~d~IeiN~gc--- 100 (376)
.+|..+.++++||+|. . +++|++||++++++|||+||||++|
T Consensus 91 ~vh~~g~~i~~QL~h~Gr~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA~~a~~aGfDgVeih~~~gyL 170 (338)
T 1z41_A 91 QVKEQGSKIGIQLAHAGRKAELEGDIFAPSAIAFDEQSATPVEMSAEKVKETVQEFKQAAARAKEAGFDVIEIHAAHGYL 170 (338)
T ss_dssp HHHHTTCEEEEEEECCGGGCCCSSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECTTSH
T ss_pred HHHhcCCEEEEEecCCCcccCCCCCCcCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccccchH
Confidence 3678899999999973 2 2789999999999999999999997
Q ss_pred ------CCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCC--CCCccHHHHHHHHHHHhhcCCccEEEE
Q 017176 101 ------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV--DDHDSYNQLCDFIYKVSSLSPTRHFII 172 (376)
Q Consensus 101 ------P~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~--~~~~~~~~~~~~i~~~~e~~Gvd~I~v 172 (376)
|.. +.|+|+||++++||++++.|++++|++.+++||+||++..- ....+.++..+ +++.+++.|+|+|+|
T Consensus 171 l~qFlsp~~-n~R~d~yGGslenr~r~~~eiv~avr~~v~~pv~vris~~~~~~~g~~~~~~~~-~a~~l~~~Gvd~i~v 248 (338)
T 1z41_A 171 IHEFLSPLS-NHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIG-FAKWMKEQGVDLIDC 248 (338)
T ss_dssp HHHHHCTTT-CCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHH-HHHHHHHTTCCEEEE
T ss_pred HHHccCCCc-CCcCcccCcchhhhHHHHHHHHHHHHHHcCCcEEEEecCcccCCCCCCHHHHHH-HHHHHHHcCCCEEEE
Confidence 775 47899999999999999999999999999999999999831 11123445444 355677899999999
Q ss_pred ccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcC-cCeeEEchHHhhCCchhhH
Q 017176 173 HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAAYQNPWYTLG 248 (376)
Q Consensus 173 h~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~G-ad~VmiGRa~l~~P~lf~~ 248 (376)
|+++...... + .-+...++.+.++++.+ ++|||++|||.|+++++++++.| ||+|++||+++.||+|+.+
T Consensus 249 ~~~~~~~~~~-~----~~~~~~~~~~~~ir~~~-~iPVi~~Ggi~s~~~a~~~l~~G~aD~V~iGR~~i~nPdl~~k 319 (338)
T 1z41_A 249 SSGALVHADI-N----VFPGYQVSFAEKIREQA-DMATGAVGMITDGSMAEEILQNGRADLIFIGRELLRDPFFART 319 (338)
T ss_dssp ECCCSSCCCC-C----CCTTTTHHHHHHHHHHH-CCEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHHCTTHHHH
T ss_pred ecCccccCCC-C----CCccchHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHcCCceEEeecHHHHhCchHHHH
Confidence 9886321100 0 01122467777887765 89999999999999999999966 9999999999999999643
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-37 Score=296.69 Aligned_cols=239 Identities=15% Similarity=0.167 Sum_probs=185.2
Q ss_pred CCCeecCCcEEEccCCC---------CChHHHHHHH-HHhCCCcEEEecceeecccccc---------cchhhh---hh-
Q 017176 2 VARQYLPPWFSVAPMMD---------WTDNHYRTLA-RLISKHAWLYTEMLAAETIIYQ---------QGNLDR---FL- 58 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~---------~td~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~---------~~~~~~---~~- 58 (376)
||+++|||||++|||.. .|+....+|. |+.||+|+++||.+.+...... +..+.. +.
T Consensus 11 ig~~~l~NRiv~apm~~~~~~~~~g~~~~~~~~~y~~rA~gG~Glii~e~~~v~~~g~~~~~~~~i~~d~~i~~~~~~~~ 90 (340)
T 3gr7_A 11 IRGLTLKNRIVMSPMCMYSCDTKDGAVRTWHKIHYPARAVGQVGLIIVEATGVTPQGRISERDLGIWSDDHIAGLRELVG 90 (340)
T ss_dssp ETTEEESSSEEECCCCCCCCTTSSSCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSEECSSTTHHHHHHHHHH
T ss_pred ECCEEEcCceEECCcCCCcccCCCCCCCHHHHHHHHHHhcCCceEEEEcceEecccccCCCCCcccCCHHHHHHHHHHHH
Confidence 68999999999999964 4677888886 6779999999999887743221 122222 22
Q ss_pred ccCCCCCCEEEEecCCC-----------------------------------HHHHHHHHHHHHHCCCCEEEecCCC---
Q 017176 59 AFSPEQHPIVLQIGGSN-----------------------------------LDNLAKATELANAYNYDEINLNCGC--- 100 (376)
Q Consensus 59 ~~~~~~~p~~vQL~g~~-----------------------------------~~~~~~aa~~~~~~G~d~IeiN~gc--- 100 (376)
.+|..+.++++||++.. .++|++||++++++|||+||||++|
T Consensus 91 ~vh~~G~~i~~QL~H~Gr~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVEih~a~GyL 170 (340)
T 3gr7_A 91 LVKEHGAAIGIQLAHAGRKSQVPGEIIAPSAVPFDDSSPTPKEMTKADIEETVQAFQNGARRAKEAGFDVIEIHAAHGYL 170 (340)
T ss_dssp HHHHTTCEEEEEEECCGGGCCSSSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHHTCSEEEEEECTTCH
T ss_pred HHHhCCCeEEEEeccCCCccCCCCCccCCCCccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchH
Confidence 36888999999997521 3799999999999999999999995
Q ss_pred ------CCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCC--CCccHHHHHHHHHHHhhcCCccEEEE
Q 017176 101 ------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD--DHDSYNQLCDFIYKVSSLSPTRHFII 172 (376)
Q Consensus 101 ------P~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~--~~~~~~~~~~~i~~~~e~~Gvd~I~v 172 (376)
|.. +.|+|+||++++||++++.||+++||+.+++||+||++..-. ...+.++..+ +++.++++|+|+|+|
T Consensus 171 l~qFlsp~~-N~R~D~yGGslenR~r~~~eiv~avr~~v~~pv~vRls~~~~~~~g~~~~~~~~-la~~L~~~Gvd~i~v 248 (340)
T 3gr7_A 171 INEFLSPLS-NRRQDEYGGSPENRYRFLGEVIDAVREVWDGPLFVRISASDYHPDGLTAKDYVP-YAKRMKEQGVDLVDV 248 (340)
T ss_dssp HHHHHCTTT-CCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEESCCCSTTSCCGGGHHH-HHHHHHHTTCCEEEE
T ss_pred HHHcCCCcc-CcCCCcccCCHHHHHHHHHHHHHHHHHhcCCceEEEeccccccCCCCCHHHHHH-HHHHHHHcCCCEEEE
Confidence 876 478999999999999999999999999999999999998410 0112333333 355667899999999
Q ss_pred ccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcC-cCeeEEchHHhhCCchhhH
Q 017176 173 HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAAYQNPWYTLG 248 (376)
Q Consensus 173 h~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~G-ad~VmiGRa~l~~P~lf~~ 248 (376)
|.+...... ...-+...++.++++++.+ ++|||++|||.|+++++++++.| ||+|++||+++.||+|+.+
T Consensus 249 s~g~~~~~~-----~~~~~~~~~~~~~~ik~~~-~iPVi~~GgI~s~e~a~~~L~~G~aD~V~iGR~~lanPdl~~k 319 (340)
T 3gr7_A 249 SSGAIVPAR-----MNVYPGYQVPFAELIRREA-DIPTGAVGLITSGWQAEEILQNGRADLVFLGRELLRNPYWPYA 319 (340)
T ss_dssp ECCCSSCCC-----CCCCTTTTHHHHHHHHHHT-TCCEEEESSCCCHHHHHHHHHTTSCSEEEECHHHHHCTTHHHH
T ss_pred ecCCccCCC-----CCCCccccHHHHHHHHHHc-CCcEEeeCCCCCHHHHHHHHHCCCeeEEEecHHHHhCchHHHH
Confidence 964321100 0011223477778887775 89999999999999999999966 9999999999999999643
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-37 Score=300.00 Aligned_cols=233 Identities=13% Similarity=0.075 Sum_probs=183.8
Q ss_pred CCCeecCCcEEEccCCCC-------ChHHHHHHHHHhCCCcEEEecceeecccccc---------cchhh---hhh-ccC
Q 017176 2 VARQYLPPWFSVAPMMDW-------TDNHYRTLARLISKHAWLYTEMLAAETIIYQ---------QGNLD---RFL-AFS 61 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~-------td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~---------~~~~~---~~~-~~~ 61 (376)
||+++|||||++|||++. |+..+++|++++| +|+++||+++++..... +.++. ++. .+|
T Consensus 17 ig~~~l~NRiv~aPm~~~~a~~g~pt~~~~~~y~~rA~-~GLiitE~~~v~~~g~~~~~~~gi~~d~~i~~~k~l~~avh 95 (377)
T 2r14_A 17 LGSLSLPNRVIMAPLTRSRTPDSVPGRLQQIYYGQRAS-AGLIISEATNISPTARGYVYTPGIWTDAQEAGWKGVVEAVH 95 (377)
T ss_dssp ETTEEESCSEEECCCCCCCCTTSCCCHHHHHHHHHTTT-SSCEEEEEEESSGGGCCBTTCCBSSSHHHHHHHHHHHHHHH
T ss_pred ECCEEecCCeEECCCcCCcCCCCCCCHHHHHHHHHHhc-CCEEEEcceeeccccccCCCCcccCCHHHHHHHHHHHHHHh
Confidence 688999999999999976 8999999998886 89999999998733221 11221 222 368
Q ss_pred CCCCCEEEEecCC-------------------------------------------CH------------HHHHHHHHHH
Q 017176 62 PEQHPIVLQIGGS-------------------------------------------NL------------DNLAKATELA 86 (376)
Q Consensus 62 ~~~~p~~vQL~g~-------------------------------------------~~------------~~~~~aa~~~ 86 (376)
..+.++++||+|. .| ++|++||+++
T Consensus 96 ~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~apS~i~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~~i~~f~~aA~~a 175 (377)
T 2r14_A 96 AKGGRIALQLWHVGRVSHELVQPDGQQPVAPSALKAEGAECFVEFEDGTAGLHPTSTPRALETDEIPGIVEDYRQAAQRA 175 (377)
T ss_dssp HTTCCEEEEEECCTTSCCTTTSGGGCCCEESSSCCCTTCEEEEECTTSCEEEEECCCCEECCGGGHHHHHHHHHHHHHHH
T ss_pred hcCCeEEEEccCCccccccccccCCCcccCCCcccccccccccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHH
Confidence 8899999999861 22 7999999999
Q ss_pred HHCCCCEEEecCCC---------CCccccCCCCccccccCCHHHHHHHHHHHhcccCc-cEEEEecCC-CC----CCccH
Q 017176 87 NAYNYDEINLNCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV-PVSVKCRIG-VD----DHDSY 151 (376)
Q Consensus 87 ~~~G~d~IeiN~gc---------P~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~-pv~vKiR~g-~~----~~~~~ 151 (376)
+++|||+||||++| |.. +.|+|+||++++||++++.||+++||+.++. ||+||++.. +. +..+.
T Consensus 176 ~~aGfDgVEIh~a~GYLl~QFlsp~~-N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~v~vrls~~~~~~~~~~~~~~ 254 (377)
T 2r14_A 176 KRAGFDMVEVHAANACLPNQFLATGT-NRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELFGLTDDEPE 254 (377)
T ss_dssp HHHTCSEEEEEECTTCHHHHHHSTTT-CCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCCTTCCCSCHH
T ss_pred HHcCCCEEEEcCcccchHHhccCCcc-ccCCCccCcchhhchHHHHHHHHHHHHHcCCCcEEEEeccccccCCCCCCCCH
Confidence 99999999999997 875 4789999999999999999999999999853 999999985 11 12334
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHc-Cc
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GA 230 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~-Ga 230 (376)
++..+ +++.++++|+|+|+||+|+... ... .. .++.++++++.+ ++|||+|||| ++++++++++. +|
T Consensus 255 ~~~~~-la~~le~~Gvd~i~v~~~~~~~-~~~------~~--~~~~~~~ik~~~-~iPvi~~Ggi-~~~~a~~~l~~g~a 322 (377)
T 2r14_A 255 AMAFY-LAGELDRRGLAYLHFNEPDWIG-GDI------TY--PEGFREQMRQRF-KGGLIYCGNY-DAGRAQARLDDNTA 322 (377)
T ss_dssp HHHHH-HHHHHHHTTCSEEEEECCC-------------CC--CTTHHHHHHHHC-CSEEEEESSC-CHHHHHHHHHTTSC
T ss_pred HHHHH-HHHHHHHcCCCEEEEeCCcccC-CCC------cc--hHHHHHHHHHHC-CCCEEEECCC-CHHHHHHHHHCCCc
Confidence 55544 4567788999999999976311 110 01 255667777765 8999999999 79999999995 59
Q ss_pred CeeEEchHHhhCCchhhH
Q 017176 231 HHVMVGRAAYQNPWYTLG 248 (376)
Q Consensus 231 d~VmiGRa~l~~P~lf~~ 248 (376)
|+||+||+++.||||+.+
T Consensus 323 D~V~igR~~l~~P~l~~k 340 (377)
T 2r14_A 323 DAVAFGRPFIANPDLPER 340 (377)
T ss_dssp SEEEESHHHHHCTTHHHH
T ss_pred eEEeecHHHHhCchHHHH
Confidence 999999999999999743
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=296.30 Aligned_cols=232 Identities=14% Similarity=0.155 Sum_probs=184.8
Q ss_pred CCCeecCCcEEEccCCCC---------ChHHHHHHHHHhCCCcEEEecceeecccc--c-------ccchhh---hhh-c
Q 017176 2 VARQYLPPWFSVAPMMDW---------TDNHYRTLARLISKHAWLYTEMLAAETII--Y-------QQGNLD---RFL-A 59 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~---------td~~~r~~~~~~Gg~gl~~te~v~~~~~~--~-------~~~~~~---~~~-~ 59 (376)
||+++|||||++|||++. |+..+++|++++| +|+++||+++++... . .+.++. ++. .
T Consensus 11 ig~~~l~NRiv~aPm~~~~a~~~~g~~t~~~~~~y~~rAg-~GLiite~~~v~~~g~~~~~~~gi~~d~~i~~~~~l~~~ 89 (364)
T 1vyr_A 11 VGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISAQAKGYAGAPGLHSPEQIAAWKKITAG 89 (364)
T ss_dssp ETTEEESSSEEECCCCCCCCBTTTTBCCHHHHHHHHHTTT-SSEEEEEEEESSSTTCCSTTCCBSSSHHHHHHHHHHHHH
T ss_pred ECCEEECCccEECCCCCCcccCCCCCCCHHHHHHHHHHhc-CCEEEEccccccccccCCCCCcccCCHHHHHHHHHHHHH
Confidence 688999999999999864 6889999998875 899999999987322 1 112221 222 3
Q ss_pred cCCCCCCEEEEecC------------------------------------------CCH------------HHHHHHHHH
Q 017176 60 FSPEQHPIVLQIGG------------------------------------------SNL------------DNLAKATEL 85 (376)
Q Consensus 60 ~~~~~~p~~vQL~g------------------------------------------~~~------------~~~~~aa~~ 85 (376)
+|..+.++++||++ ..| ++|+++|++
T Consensus 90 vh~~g~~i~~QL~H~Gr~~~~~~~~~g~~~~apS~i~~~~~~~~~~~~g~~~~~~~~~p~~mt~~eI~~~i~~f~~aA~~ 169 (364)
T 1vyr_A 90 VHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQAVAN 169 (364)
T ss_dssp HHHTTCCEEEEEECCTTSSCGGGSGGGCCCEESSSCCCCSEEEEECTTSCEEEEECCCCEECCGGGHHHHHHHHHHHHHH
T ss_pred HHhcCCeEEEEeccCCcccCcccccCCCccccCCCcccccccccccccccccccCCCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 68889999999985 122 799999999
Q ss_pred HHHCCCCEEEecCCC---------CCccccCCCCccccccCCHHHHHHHHHHHhcccC-ccEEEEecCC--CCC----Cc
Q 017176 86 ANAYNYDEINLNCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIG--VDD----HD 149 (376)
Q Consensus 86 ~~~~G~d~IeiN~gc---------P~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~-~pv~vKiR~g--~~~----~~ 149 (376)
++++|||+||||++| |.. +.|+|+||++++||++++.||+++||+.++ .||+||++.+ +.+ ..
T Consensus 170 a~~aGfDgVeih~a~GyLl~qFlsp~~-N~R~D~yGGslenr~r~~~eiv~avr~~vg~~~v~vrls~~~~~~~~~~~~~ 248 (364)
T 1vyr_A 170 AREAGFDLVELHSAHGYLLHQFLSPSS-NQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNVDNGPN 248 (364)
T ss_dssp HHHTTCSEEEEEECTTSHHHHHHCTTT-CCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTTBCCCTT
T ss_pred HHHcCCCEEEEcCccchHHHhccCCcc-cccCCcCCcchhcChhhHHHHHHHHHHhcCCCcEEEEEccccccccccCCCC
Confidence 999999999999997 764 478899999999999999999999999984 3999999986 432 22
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcC
Q 017176 150 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG 229 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~G 229 (376)
+.++..+ +++.+++.|+|+|++|+++... + ++..++.++++++.+ ++|||+||+| ++++++++++.|
T Consensus 249 ~~~~~~~-~a~~l~~~G~d~i~v~~~~~~~-~---------~~~~~~~~~~v~~~~-~iPvi~~Ggi-t~~~a~~~l~~g 315 (364)
T 1vyr_A 249 EEADALY-LIEELAKRGIAYLHMSETDLAG-G---------KPYSEAFRQKVRERF-HGVIIGAGAY-TAEKAEDLIGKG 315 (364)
T ss_dssp HHHHHHH-HHHHHHHTTCSEEEEECCBTTB-C---------CCCCHHHHHHHHHHC-CSEEEEESSC-CHHHHHHHHHTT
T ss_pred CHHHHHH-HHHHHHHhCCCEEEEecCcccC-C---------CcccHHHHHHHHHHC-CCCEEEECCc-CHHHHHHHHHCC
Confidence 4555544 4567788999999999875311 1 112366777777765 8999999999 999999999954
Q ss_pred -cCeeEEchHHhhCCchhhH
Q 017176 230 -AHHVMVGRAAYQNPWYTLG 248 (376)
Q Consensus 230 -ad~VmiGRa~l~~P~lf~~ 248 (376)
||+||+||+++.||||+.+
T Consensus 316 ~aD~V~~gR~~l~~P~~~~~ 335 (364)
T 1vyr_A 316 LIDAVAFGRDYIANPDLVAR 335 (364)
T ss_dssp SCSEEEESHHHHHCTTHHHH
T ss_pred CccEEEECHHHHhChhHHHH
Confidence 9999999999999999743
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-36 Score=291.33 Aligned_cols=237 Identities=16% Similarity=0.205 Sum_probs=185.0
Q ss_pred CCCeecCCcEEEccCCC--------CChHHHHHHH-HHhCCCcEEEecceeeccccccc---------chhhh---hh-c
Q 017176 2 VARQYLPPWFSVAPMMD--------WTDNHYRTLA-RLISKHAWLYTEMLAAETIIYQQ---------GNLDR---FL-A 59 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~--------~td~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~~---------~~~~~---~~-~ 59 (376)
||+++|||||++|||+. .|+....+|. |+.||+|+++||.+.+....... ..+.. +. .
T Consensus 10 ig~~~l~NRiv~apm~~~~~~~~g~~t~~~~~yy~~rA~gG~Gliite~~~V~~~g~~~~~~~gi~~d~~i~~~~~~~~~ 89 (343)
T 3kru_A 10 IKDITIKNRIMMSPMCMYSASTDGMPNDWHIVHYATRAIGGVGLIMQEATAVESRGRITDHDLGIWNDEQVKELKKIVDI 89 (343)
T ss_dssp ETTEEESSSEEECCCCCCCSCTTCCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSCBCSSHHHHHHHHHHHHH
T ss_pred eeeeeeeeeecccchhheecccCCCCCceeeeeeehhhccceeeeeehhhhhhhcCccccccccccCHHHHHHHHHHHHH
Confidence 68899999999999975 4778888886 67799999999998887432211 11222 22 2
Q ss_pred cCCCCCCEEEEecCCC------------------------------------HHHHHHHHHHHHHCCCCEEEec------
Q 017176 60 FSPEQHPIVLQIGGSN------------------------------------LDNLAKATELANAYNYDEINLN------ 97 (376)
Q Consensus 60 ~~~~~~p~~vQL~g~~------------------------------------~~~~~~aa~~~~~~G~d~IeiN------ 97 (376)
+|..+.++++||++.. .++|++||++++++|||+||||
T Consensus 90 vh~~G~~i~~QL~H~Gr~~~~~g~~~~apS~i~~~~~~~~p~~mt~~eI~~ii~~f~~AA~~a~~aGfDgVEih~ahGYL 169 (343)
T 3kru_A 90 CKANGAVMGIQLAHAGRKCNISYEDVVGPSPIKAGDRYKLPRELSVEEIKSIVKAFGEAAKRANLAGYDVVEIHAAHGYL 169 (343)
T ss_dssp HHHTTCEEEEEEECCGGGCCCTTSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHHTCSEEEEEECTTSH
T ss_pred HhcCCceEeeehhhccCccCcchhhccCCCcCCCCccccCchhcCHHHHHHHHHHHHHHHhhccccCCceEEEecccchh
Confidence 6788999999997520 3799999999999999999999
Q ss_pred ---CCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCC-CCC-CccHHHHHHHHHHHhhcCCccEE
Q 017176 98 ---CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIG-VDD-HDSYNQLCDFIYKVSSLSPTRHF 170 (376)
Q Consensus 98 ---~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g-~~~-~~~~~~~~~~i~~~~e~~Gvd~I 170 (376)
|.||.. +.|+|+||++++||++++.||+++||+.+ ++||+||++.. +.+ ..+.++..++ ++.++++ +|+|
T Consensus 170 l~qFlsp~~-N~R~D~yGGslenR~rf~~eiv~aVr~avg~d~pv~vRls~~~~~~~g~~~~~~~~~-a~~l~~~-vd~i 246 (343)
T 3kru_A 170 IHEFLSPLS-NKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRVSADDYMEGGINIDMMVEY-INMIKDK-VDLI 246 (343)
T ss_dssp HHHHHCTTT-CCCCSTTSSSHHHHTHHHHHHHHHHHHTSCTTSCEEEEEECCCSSTTSCCHHHHHHH-HHHHTTT-CSEE
T ss_pred HHHhhcccc-cccchhhccchHhHHHHHHHHHHHHHhcCCccCCeEEEeechhhhccCccHHHHHHH-HHHhhcc-ccEE
Confidence 569996 47899999999999999999999999998 68999999983 322 2345566554 5667788 9999
Q ss_pred EE-ccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcC-cCeeEEchHHhhCCchhhH
Q 017176 171 II-HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAAYQNPWYTLG 248 (376)
Q Consensus 171 ~v-h~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~G-ad~VmiGRa~l~~P~lf~~ 248 (376)
+| |+++..... ...+...++++.++++.+ ++|||++|+|.|+++++++++.| ||+|++||+++.||||+.+
T Consensus 247 ~vs~g~~~~~~~------~~~~~~~~~~~~~ir~~~-~iPVi~~Ggi~t~e~Ae~~l~~G~aD~V~iGR~~lanPdl~~k 319 (343)
T 3kru_A 247 DVSSGGLLNVDI------NLYPGYQVKYAETIKKRC-NIKTSAVGLITTQELAEEILSNERADLVALGRELLRNPYWVLH 319 (343)
T ss_dssp EEECCCSSCCCC------CCCTTTTHHHHHHHHHHH-TCEEEEESSCCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHH
T ss_pred eccCCceEeeee------cccCceeehHHHHHHHhc-CcccceeeeeeHHHHHHHHHhchhhHHHHHHHHHhcCCeEEEE
Confidence 99 565432100 001122467777777765 89999999999999999999955 9999999999999999743
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-36 Score=294.73 Aligned_cols=231 Identities=15% Similarity=0.103 Sum_probs=183.7
Q ss_pred CCCeecCCcEEEccCCCC---------ChHHHHHHHHHhCCCcEEEecceeecccccc---------cchhh---hhh-c
Q 017176 2 VARQYLPPWFSVAPMMDW---------TDNHYRTLARLISKHAWLYTEMLAAETIIYQ---------QGNLD---RFL-A 59 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~---------td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~---------~~~~~---~~~-~ 59 (376)
||+++|+|||++|||++. |+..+++|++++| +|+++||+++++..... +.++. ++. .
T Consensus 11 ig~~~l~NRiv~aPm~~~~a~~~~g~~t~~~~~~y~~rA~-~GLiite~~~v~~~g~~~~~~~gi~~d~~i~~~~~l~~~ 89 (365)
T 2gou_A 11 LGALTLKNRIVMPPMTRSRASQPGDVANHMMAIYYAQRAS-AGLIVSEGTQISPTAKGYAWTPGIYTPEQIAGWRIVTEA 89 (365)
T ss_dssp ETTEEESSSEEECCCCCCCCBTTTTBCCHHHHHHHHTTTT-SSEEEEEEEESSGGGCCSTTCCBSSSHHHHHHHHHHHHH
T ss_pred ECCEEEcCceEECCCCCCcccCCCCCCCHHHHHHHHHHhc-CCEEEECceeecccccCCCCCCccCCHHHHHHHHHHHHH
Confidence 689999999999999876 4788999998776 89999999988733211 11221 222 2
Q ss_pred cCCCCCCEEEEecC------------------------------------------CCH------------HHHHHHHHH
Q 017176 60 FSPEQHPIVLQIGG------------------------------------------SNL------------DNLAKATEL 85 (376)
Q Consensus 60 ~~~~~~p~~vQL~g------------------------------------------~~~------------~~~~~aa~~ 85 (376)
+|..+.++++||++ ..| ++|+++|++
T Consensus 90 vh~~g~~i~~QL~H~Gr~~~~~~~~g~~~~apS~i~~~~~~~~~~~~~g~~~~~~~~~p~~mt~~eI~~~i~~f~~aA~~ 169 (365)
T 2gou_A 90 VHAKGCAIFAQLWHVGRVTHPDNIDGQQPISSSTLKAENVKVFVDNGSDEPGFVDVAVPRAMTKADIAQVIADYRQAALN 169 (365)
T ss_dssp HHHHSCEEEEEEECCTTSSCGGGTTTCCCEESSSCCCTTCEEEECCSSSSCEEEECCCCEECCHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCeEEEEeecCCCcccccccCCCCccCCCCccccccccccccccccccccCCCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 67889999999985 112 799999999
Q ss_pred HHHCCCCEEEecCCC---------CCccccCCCCccccccCCHHHHHHHHHHHhcccCc-cEEEEecC-CCC----CCcc
Q 017176 86 ANAYNYDEINLNCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV-PVSVKCRI-GVD----DHDS 150 (376)
Q Consensus 86 ~~~~G~d~IeiN~gc---------P~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~-pv~vKiR~-g~~----~~~~ 150 (376)
++++|||+||||++| |.. +.|+|+||++++||++++.||+++||+.++. ||+||++. ++. +..+
T Consensus 170 a~~aGfDgVeih~a~gYLl~qFlsp~~-N~R~D~yGGslenr~r~~~eiv~avr~~vg~~pv~vris~~~~~~~~~~~~~ 248 (365)
T 2gou_A 170 AMEAGFDGIELHAANGYLINQFIDSEA-NNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVRLAPLTTLNGTVDADP 248 (365)
T ss_dssp HHHTTCSEEEEECCTTSHHHHHHSGGG-CCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECSSCCTTSCCCSSH
T ss_pred HHHcCCCEEEEecccchhHhhccCCCc-cCcCcccCcchhhhHHHHHHHHHHHHHHcCCCcEEEEEccccccCCCCCCCC
Confidence 999999999999998 765 5789999999999999999999999998853 99999998 331 2234
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcC-
Q 017176 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG- 229 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~G- 229 (376)
.++..+ +++.+++.|+|+|++|+++. .+. . ...++.++++++.+ ++|||+|||| |+++++++++.|
T Consensus 249 ~~~~~~-~a~~l~~~G~d~i~v~~~~~--~~~--~------~~~~~~~~~i~~~~-~iPvi~~Ggi-~~~~a~~~l~~g~ 315 (365)
T 2gou_A 249 ILTYTA-AAALLNKHRIVYLHIAEVDW--DDA--P------DTPVSFKRALREAY-QGVLIYAGRY-NAEKAEQAINDGL 315 (365)
T ss_dssp HHHHHH-HHHHHHHTTCSEEEEECCBT--TBC--C------CCCHHHHHHHHHHC-CSEEEEESSC-CHHHHHHHHHTTS
T ss_pred HHHHHH-HHHHHHHcCCCEEEEeCCCc--CCC--C------CccHHHHHHHHHHC-CCcEEEeCCC-CHHHHHHHHHCCC
Confidence 555554 45667889999999998763 111 0 11256677777765 8999999999 999999999955
Q ss_pred cCeeEEchHHhhCCchhh
Q 017176 230 AHHVMVGRAAYQNPWYTL 247 (376)
Q Consensus 230 ad~VmiGRa~l~~P~lf~ 247 (376)
||+||+||+++.||||+.
T Consensus 316 aD~V~igR~~i~~P~l~~ 333 (365)
T 2gou_A 316 ADMIGFGRPFIANPDLPE 333 (365)
T ss_dssp CSEEECCHHHHHCTTHHH
T ss_pred cceehhcHHHHhCchHHH
Confidence 999999999999999964
|
| >2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=293.64 Aligned_cols=241 Identities=15% Similarity=0.120 Sum_probs=182.7
Q ss_pred CCCeecCCcEEEccCCCC-------ChHHHHHHHHHhCCCcEEEecceeeccccc---------ccchhh---hhh-ccC
Q 017176 2 VARQYLPPWFSVAPMMDW-------TDNHYRTLARLISKHAWLYTEMLAAETIIY---------QQGNLD---RFL-AFS 61 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~-------td~~~r~~~~~~Gg~gl~~te~v~~~~~~~---------~~~~~~---~~~-~~~ 61 (376)
||+++|||||++|||++. |+....+|.+.+.|+|+++||++.++.... .+..+. ++. .+|
T Consensus 24 ig~~~L~NRiv~aPm~~~~a~~g~pt~~~~~yy~~rA~G~GLIitE~~~v~~~g~~~~~~~gi~~d~~i~~~k~l~~avh 103 (402)
T 2hsa_B 24 MGKFNLSHRVVLAPMTRCRALNNIPQAALGEYYEQRATAGGFLITEGTMISPTSAGFPHVPGIFTKEQVREWKKIVDVVH 103 (402)
T ss_dssp ETTEEESCSEEECCCCCCCSGGGCCCHHHHHHHHHHCCTTCEEECCCEESSTTCCCSTTCCBCSSHHHHHHHHHHHHHHH
T ss_pred ECCEEecCCeEECCCCCCcCCCCCCCHHHHHHHHHHhccCCEEEecceeeccccccCCCCcccCCHHHHHHHHHHHHHHH
Confidence 688999999999999864 567777776433339999999999873221 112221 222 368
Q ss_pred CCCCCEEEEecC----------------------------------------CCH------------HHHHHHHHHHHHC
Q 017176 62 PEQHPIVLQIGG----------------------------------------SNL------------DNLAKATELANAY 89 (376)
Q Consensus 62 ~~~~p~~vQL~g----------------------------------------~~~------------~~~~~aa~~~~~~ 89 (376)
..+.++++||++ ..| ++|++||++++++
T Consensus 104 ~~G~~i~~QL~H~Gr~~~~~~~~~g~~~~apS~v~~~~~~~~~~~~g~~~~~~~p~~mt~~eI~~ii~~f~~AA~~a~~A 183 (402)
T 2hsa_B 104 AKGAVIFCQLWHVGRASHEVYQPAGAAPISSTEKPISNRWRILMPDGTHGIYPKPRAIGTYEISQVVEDYRRSALNAIEA 183 (402)
T ss_dssp HTTCEEEEEEECCTTSCCGGGCTTCCCCEESCSCCCCTTCEEECTTSCEEECCCCEECCGGGHHHHHHHHHHHHHHHHHT
T ss_pred hcCCeEEEEeccCCcccccccccCCCccccCCCcccccccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHc
Confidence 889999999985 123 7999999999999
Q ss_pred CCCEEEecCCC---------CCccccCCCCccccccCCHHHHHHHHHHHhcccC-ccEEEEecCC-C----CCCccHHHH
Q 017176 90 NYDEINLNCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIG-V----DDHDSYNQL 154 (376)
Q Consensus 90 G~d~IeiN~gc---------P~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~-~pv~vKiR~g-~----~~~~~~~~~ 154 (376)
|||+||||++| |.. +.|+|+||++++||++++.|||++||+.++ .||+||++.+ + ++..+.++.
T Consensus 184 GfDgVEIh~ahGYLl~QFLsp~~-N~RtD~yGGslenR~rf~~Eiv~aVr~avg~~~V~vRls~~~~~~g~~~~~~~~~~ 262 (402)
T 2hsa_B 184 GFDGIEIHGAHGYLIDQFLKDGI-NDRTDEYGGSLANRCKFITQVVQAVVSAIGADRVGVRVSPAIDHLDAMDSNPLSLG 262 (402)
T ss_dssp TCSEEEEECCTTSHHHHHHCTTT-CCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECSSCCSTTCCCSCHHHHH
T ss_pred CCCEEEECCccchHHHhccCCcc-CccCCccCcChhhhhHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCCCHHHH
Confidence 99999999997 875 478999999999999999999999999985 5999999985 2 122334555
Q ss_pred HHHHHHHhhcCC------ccEEEEccCccccCCCCCCCCCCCC-c-ccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHH
Q 017176 155 CDFIYKVSSLSP------TRHFIIHSRKALLNGISPAENRTIP-P-LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL 226 (376)
Q Consensus 155 ~~~i~~~~e~~G------vd~I~vh~r~~~~~g~~~~~~~~~~-~-~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l 226 (376)
.. +++.++++| +|+|+||+++.......+. .... + ..+++++++++.+ ++|||+|||| +++++++++
T Consensus 263 ~~-la~~le~~G~~gg~~vd~i~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~vk~~~-~iPvi~~G~i-~~~~a~~~l 337 (402)
T 2hsa_B 263 LA-VVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEA--GRLGSEEEEARLMRTLRNAY-QGTFICSGGY-TRELGIEAV 337 (402)
T ss_dssp HH-HHHHHHHHHHHHTSCCSEEEEECCCCCTTTTSSS--TTTTHHHHHHHHHHHHHHHC-SSCEEEESSC-CHHHHHHHH
T ss_pred HH-HHHHHHhcCCccCCceEEEEEecCccccccCCcc--ccccCCcchHHHHHHHHHHC-CCCEEEeCCC-CHHHHHHHH
Confidence 54 456778899 9999999886321000000 0000 1 1356667777765 8999999999 999999999
Q ss_pred Hc-CcCeeEEchHHhhCCchhhH
Q 017176 227 RK-GAHHVMVGRAAYQNPWYTLG 248 (376)
Q Consensus 227 ~~-Gad~VmiGRa~l~~P~lf~~ 248 (376)
+. +||+||+||+++.||||+.+
T Consensus 338 ~~g~aD~V~igR~~l~dP~l~~k 360 (402)
T 2hsa_B 338 AQGDADLVSYGRLFISNPDLVMR 360 (402)
T ss_dssp HTTSCSEEEESHHHHHCTTHHHH
T ss_pred HCCCCceeeecHHHHhCchHHHH
Confidence 94 59999999999999999743
|
| >1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=292.38 Aligned_cols=235 Identities=14% Similarity=0.061 Sum_probs=179.8
Q ss_pred CCCeecCCcEEEccCCCC-------ChHHHHHHHHHhCCCcEEEecceeecccccc---------cchh---hhhh-ccC
Q 017176 2 VARQYLPPWFSVAPMMDW-------TDNHYRTLARLISKHAWLYTEMLAAETIIYQ---------QGNL---DRFL-AFS 61 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~-------td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~---------~~~~---~~~~-~~~ 61 (376)
||+++|||||++|||++. |+....+|.+.+-|+|+++||+++++..... +..+ .++. .+|
T Consensus 22 ig~~~l~NRiv~aPm~~~~a~~g~pt~~~~~yy~~rA~g~GLiite~~~v~~~g~~~~~~~gi~~d~~i~~~k~l~~avh 101 (376)
T 1icp_A 22 MGKFELCHRVVLAPLTRQRSYGYIPQPHAILHYSQRSTNGGLLIGEATVISETGIGYKDVPGIWTKEQVEAWKPIVDAVH 101 (376)
T ss_dssp ETTEEESCSEEECCCCCCCCGGGSCCHHHHHHHHHTCCTTCEEECCCEECSGGGCCSTTCCBCSSHHHHHHHHHHHHHHH
T ss_pred ECCEEECCccEECCcCcCcCCCCCCCHHHHHHHHHhcCCeeEEEECceeeccccccCcccCccCCHHHHHHHHHHHHHHH
Confidence 688999999999999875 6777777765442399999999998743221 1222 1222 368
Q ss_pred CCCCCEEEEecCC--------------------------------------CH------------HHHHHHHHHHHHCCC
Q 017176 62 PEQHPIVLQIGGS--------------------------------------NL------------DNLAKATELANAYNY 91 (376)
Q Consensus 62 ~~~~p~~vQL~g~--------------------------------------~~------------~~~~~aa~~~~~~G~ 91 (376)
..+.++++||+|. .| ++|++||++++++||
T Consensus 102 ~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~~i~~f~~AA~~a~~aGf 181 (376)
T 1icp_A 102 AKGGIFFCQIWHVGRVSNKDFQPNGEDPISCTDRGLTPQIMSNGIDIAHFTRPRRLTTDEIPQIVNEFRVAARNAIEAGF 181 (376)
T ss_dssp HTTCEEEEEEECCTTSSCTTTSGGGCCCEESSSCCCCCEECTTSSCEECCCCCEECCTTTHHHHHHHHHHHHHHHHHTTC
T ss_pred hcCCeEEEEeecCCCCcCcccccCCCceecCCCCCCccccccccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8899999999871 12 699999999999999
Q ss_pred CEEEecCCC---------CCccccCCCCccccccCCHHHHHHHHHHHhcccCc-cEEEEecCC-C----CCCccHHHHHH
Q 017176 92 DEINLNCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV-PVSVKCRIG-V----DDHDSYNQLCD 156 (376)
Q Consensus 92 d~IeiN~gc---------P~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~-pv~vKiR~g-~----~~~~~~~~~~~ 156 (376)
|+||||++| |.. +.|+|+||++++||++++.||+++||++++. ||+||++.. + ++..+.++..+
T Consensus 182 DgVEih~a~GyLl~qFlsp~~-N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~V~vrls~~~~~~g~~~~~~~~~~~~ 260 (376)
T 1icp_A 182 DGVEIHGAHGYLIDQFMKDQV-NDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHYNEAGDTNPTALGLY 260 (376)
T ss_dssp SEEEEEECTTSHHHHHHCTTT-CCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCCSCHHHHHHH
T ss_pred CEEEEcCccchhhhhccCCcc-cCCCCccCccHHHhHHHHHHHHHHHHHHhcCCceEEEeccccccCCCCCCCCHHHHHH
Confidence 999999997 765 4789999999999999999999999999853 999999974 2 22233444444
Q ss_pred HHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEE
Q 017176 157 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV 235 (376)
Q Consensus 157 ~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~Vmi 235 (376)
+++.++++|+|+|++|+++....+. .. ..++.++++++.+ ++|||+||+| ++++++++++ .+||+||+
T Consensus 261 -la~~le~~Gvd~i~v~~~~~~~~~~-~~-------~~~~~~~~vr~~~-~iPvi~~G~i-~~~~a~~~l~~g~aD~V~~ 329 (376)
T 1icp_A 261 -MVESLNKYDLAYCHVVEPRMKTAWE-KI-------ECTESLVPMRKAY-KGTFIVAGGY-DREDGNRALIEDRADLVAY 329 (376)
T ss_dssp -HHHHHGGGCCSEEEEECCSCCC--------------CCCCSHHHHHHC-CSCEEEESSC-CHHHHHHHHHTTSCSEEEE
T ss_pred -HHHHHHHcCCCEEEEcCCcccCCCC-cc-------ccHHHHHHHHHHc-CCCEEEeCCC-CHHHHHHHHHCCCCcEEee
Confidence 4667789999999999886321111 00 0123345666655 8999999999 9999999999 45999999
Q ss_pred chHHhhCCchhhH
Q 017176 236 GRAAYQNPWYTLG 248 (376)
Q Consensus 236 GRa~l~~P~lf~~ 248 (376)
||+++.||||+.+
T Consensus 330 gR~~l~~P~l~~k 342 (376)
T 1icp_A 330 GRLFISNPDLPKR 342 (376)
T ss_dssp SHHHHHCTTHHHH
T ss_pred cHHHHhCccHHHH
Confidence 9999999999743
|
| >3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=295.23 Aligned_cols=241 Identities=12% Similarity=0.097 Sum_probs=183.0
Q ss_pred C-CCeecCCcEEEccCCC--------CChHHHHHHHHHhCCCcEEEecceeecccccc---------cchhhh---hh-c
Q 017176 2 V-ARQYLPPWFSVAPMMD--------WTDNHYRTLARLISKHAWLYTEMLAAETIIYQ---------QGNLDR---FL-A 59 (376)
Q Consensus 2 i-~~~~l~nri~lAPM~~--------~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~---------~~~~~~---~~-~ 59 (376)
| |+++|||||++|||.. +|+....+|.++++|+|+++||.+.+...... +..+.. +. .
T Consensus 33 i~g~~~lkNRiv~aPm~~~~a~~dg~~t~~~~~yy~~rA~G~GLiIte~~~V~~~g~~~~~~~gi~~d~~i~~~k~l~~a 112 (419)
T 3l5a_A 33 LPNGIKISNRFVLSPMTVNASTKEGYITKADLAYAARRSNSAGMQVTGAAYIEPYGKLFEYGFNIDHDACIPGLTNMAST 112 (419)
T ss_dssp CTTSCEESSSEEECCCCCCCSCTTCCCCHHHHHHHHHTTTSCSEEEEEEEESSGGGCCSTTCEECSSGGGHHHHHHHHHH
T ss_pred eCCCCEECCCeEeCCCCCCccCCCCCCCHHHHHHHHHHhcCCcEEEecceEeCcccccCCCccccccHHHHHHHHHHHHH
Confidence 5 8899999999999964 57888898876666799999999888743221 122222 22 3
Q ss_pred cCCCCCCEEEEecCCC----------------------------------------HHHHHHHHHHHHHCCCCEEEecCC
Q 017176 60 FSPEQHPIVLQIGGSN----------------------------------------LDNLAKATELANAYNYDEINLNCG 99 (376)
Q Consensus 60 ~~~~~~p~~vQL~g~~----------------------------------------~~~~~~aa~~~~~~G~d~IeiN~g 99 (376)
+|..+.++++||++.. .++|++||++++++|||+||||++
T Consensus 113 vh~~G~~i~~QL~H~Gr~~~~~~~~~~~~vapS~i~~~~~~~~~pr~mt~~eI~~ii~~F~~AA~rA~~AGfDgVEIH~a 192 (419)
T 3l5a_A 113 MKQHGSLAIIQLAHAGRFSNQAILNFGKVYGPSPMTLHSPIEHVVIAMSHEKINSIIQQYRDATLRAIKAGFDGVEISIA 192 (419)
T ss_dssp HHTTSCEEEEEEECCGGGCHHHHHHHSEEEESSCEEECSSSSEEEEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred HHhcCCEEEEEeccCCCcccccccCCCceeCCCCCccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCc
Confidence 6889999999998521 278999999999999999999999
Q ss_pred C---------CCccccCCCCccccc-cCCHHHHHHHHHHHhccc------CccEEEEecCCC--CC--CccHHHHHHHHH
Q 017176 100 C---------PSPKVAGHGCFGVSL-MLDPKFVGEAMSVIAANT------NVPVSVKCRIGV--DD--HDSYNQLCDFIY 159 (376)
Q Consensus 100 c---------P~~~v~r~g~yG~~l-~~~~~~~~eiv~~v~~~~------~~pv~vKiR~g~--~~--~~~~~~~~~~i~ 159 (376)
| |.. +.|+|+|||++ +||++++.||+++|++++ ++||+||++..- +. ..+.++..++ +
T Consensus 193 hGYLl~QFlSp~~-N~RtD~yGGs~lenR~Rf~~evv~aVr~~v~~~~~~~f~v~vRis~~~~~~~~~G~~~ed~~~l-a 270 (419)
T 3l5a_A 193 QRLLIQTFFSTFS-NRRTDHYGADSLKNRARLCLEVMRAVQEVIDKEAPDNFILGFRATPEETRGSDLGYTIDEFNQL-I 270 (419)
T ss_dssp TTSHHHHHHCTTT-CCCCSTTSTTCHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECSCEEETTEEEECHHHHHHH-H
T ss_pred cchHHHHccCCcc-cccccCCCCchhhhhhHHHHHHHHHHHHHHhhhcCCCeeEEEecccccccCCCCCCCHHHHHHH-H
Confidence 8 875 58899999999 999999999999999987 679999998721 00 1234555554 4
Q ss_pred HHhhc-CCccEEEEccCccccCCC-CCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017176 160 KVSSL-SPTRHFIIHSRKALLNGI-SPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 160 ~~~e~-~Gvd~I~vh~r~~~~~g~-~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
+.+++ +|+|+|+||+++...... ..... +...++.+..+++.+. ++|||+||||+|+++++++++. ||+|++|
T Consensus 271 ~~L~~~~Gvd~I~vs~g~~~~~~~~~~~~g---~~~~~~~a~~Ik~~v~~~iPVI~~GgI~t~e~Ae~~L~~-aDlVaiG 346 (419)
T 3l5a_A 271 DWVMDVSNIQYLAIASWGRHIYQNTSRTPG---DHFGRPVNQIVYEHLAGRIPLIASGGINSPESALDALQH-ADMVGMS 346 (419)
T ss_dssp HHHHHHSCCCCEEECCTTCCGGGCBCCCSS---TTTTSBHHHHHHHHHTTSSCEEECSSCCSHHHHHHHGGG-CSEEEES
T ss_pred HHHHhhcCCcEEEEeeCCccccccccCCCC---ccccHHHHHHHHHHcCCCCeEEEECCCCCHHHHHHHHHh-CCcHHHH
Confidence 55677 999999999986411000 00000 0012344555555543 6999999999999999999999 9999999
Q ss_pred hHHhhCCchhhH
Q 017176 237 RAAYQNPWYTLG 248 (376)
Q Consensus 237 Ra~l~~P~lf~~ 248 (376)
|+++.||+|+.+
T Consensus 347 R~~IanPdlv~k 358 (419)
T 3l5a_A 347 SPFVTEPDFVHK 358 (419)
T ss_dssp THHHHCTTHHHH
T ss_pred HHHHHCcHHHHH
Confidence 999999999743
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-35 Score=285.41 Aligned_cols=239 Identities=18% Similarity=0.203 Sum_probs=185.1
Q ss_pred CCCeecCCcEEEccCCC--------CChHHHHHHH-HHhCCCcEEEecceeecccccc---------cchhhh---hh-c
Q 017176 2 VARQYLPPWFSVAPMMD--------WTDNHYRTLA-RLISKHAWLYTEMLAAETIIYQ---------QGNLDR---FL-A 59 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~--------~td~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~---------~~~~~~---~~-~ 59 (376)
||+++|||||++|||+. .|+....+|. |+.||+|+++||.+.+...... +..+.. +. .
T Consensus 10 ig~~~l~NRiv~apm~~~~~~~~g~~~~~~~~~y~~rA~gg~Glii~e~~~v~~~g~~~~~~~~i~~d~~i~~~~~~~~~ 89 (349)
T 3hgj_A 10 LGGLRLKNRLAMSPMCQYSATLEGEVTDWHLLHYPTRALGGVGLILVEATAVEPLGRISPYDLGIWSEDHLPGLKELARR 89 (349)
T ss_dssp ETTEEESSSEEECCCCCCCSCTTCCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSCBCSSGGGHHHHHHHHHH
T ss_pred ECCEEecCceEECCcCcCCcCCCCCCCHHHHHHHHHHhcCCceEEEecceeecccccCCCCcCccCcHHHHHHHHHHHHH
Confidence 68999999999999974 4678888886 6779999999999888753221 122222 22 2
Q ss_pred cCCCCCCEEEEecCC----------------C-----------------------------HHHHHHHHHHHHHCCCCEE
Q 017176 60 FSPEQHPIVLQIGGS----------------N-----------------------------LDNLAKATELANAYNYDEI 94 (376)
Q Consensus 60 ~~~~~~p~~vQL~g~----------------~-----------------------------~~~~~~aa~~~~~~G~d~I 94 (376)
+|..+.++++||++. . .++|++||++++++|||+|
T Consensus 90 vh~~G~~i~~Ql~H~Gr~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgV 169 (349)
T 3hgj_A 90 IREAGAVPGIQLAHAGRKAGTARPWEGGKPLGWRVVGPSPIPFDEGYPVPEPLDEAGMERILQAFVEGARRALRAGFQVI 169 (349)
T ss_dssp HHHTTCEEEEEEECCGGGCCBCCGGGTCCBCCCCCEESSSCCSSTTCCCCEECCHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHhCCCeEEEEeccCCccccccccccccccCCCcccCCCcccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 678899999999741 0 3789999999999999999
Q ss_pred EecCCC---------CCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCC--CCCccHHHHHHHHHHH
Q 017176 95 NLNCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGV--DDHDSYNQLCDFIYKV 161 (376)
Q Consensus 95 eiN~gc---------P~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~--~~~~~~~~~~~~i~~~ 161 (376)
|||++| |.. +.|+|+||++++||++++.||+++||+.+ ++||.||++..- +...+.++... +++.
T Consensus 170 Eih~a~GyLl~qFlsp~~-N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRls~~~~~~~g~~~~~~~~-la~~ 247 (349)
T 3hgj_A 170 ELHMAHGYLLSSFLSPLS-NQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSATDWGEGGWSLEDTLA-FARR 247 (349)
T ss_dssp EEEECTTSHHHHHHCTTT-CCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCCCSTTSCCHHHHHH-HHHH
T ss_pred EECCccchHHHHhcCCcc-cccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEeccccccCCCCCHHHHHH-HHHH
Confidence 999999 886 47899999999999999999999999998 689999999731 11123455554 3556
Q ss_pred hhcCCccEEEEcc-CccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcC-cCeeEEchHH
Q 017176 162 SSLSPTRHFIIHS-RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAA 239 (376)
Q Consensus 162 ~e~~Gvd~I~vh~-r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~G-ad~VmiGRa~ 239 (376)
+++.|+|+|++|. +....... + .-+...++.+.++++.+ ++|||++|+|.|+++++++++.| ||+|++||++
T Consensus 248 L~~~Gvd~i~vs~g~~~~~~~~-~----~~~~~~~~~~~~ir~~~-~iPVi~~Ggi~t~e~a~~~l~~G~aD~V~iGR~~ 321 (349)
T 3hgj_A 248 LKELGVDLLDCSSGGVVLRVRI-P----LAPGFQVPFADAVRKRV-GLRTGAVGLITTPEQAETLLQAGSADLVLLGRVL 321 (349)
T ss_dssp HHHTTCCEEEEECCCSCSSSCC-C----CCTTTTHHHHHHHHHHH-CCEEEECSSCCCHHHHHHHHHTTSCSEEEESTHH
T ss_pred HHHcCCCEEEEecCCcCccccc-C----CCccccHHHHHHHHHHc-CceEEEECCCCCHHHHHHHHHCCCceEEEecHHH
Confidence 7789999999995 33211000 0 01123467777777765 89999999999999999999966 9999999999
Q ss_pred hhCCchhhH
Q 017176 240 YQNPWYTLG 248 (376)
Q Consensus 240 l~~P~lf~~ 248 (376)
+.||+|+.+
T Consensus 322 lanPdl~~k 330 (349)
T 3hgj_A 322 LRDPYFPLR 330 (349)
T ss_dssp HHCTTHHHH
T ss_pred HhCchHHHH
Confidence 999999643
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=283.27 Aligned_cols=240 Identities=17% Similarity=0.158 Sum_probs=185.2
Q ss_pred CCCeecCCcEEEccCCC-------CChHHHHHHH-HHhCCCcEEEecceeeccccccc---------chhh---hhh-cc
Q 017176 2 VARQYLPPWFSVAPMMD-------WTDNHYRTLA-RLISKHAWLYTEMLAAETIIYQQ---------GNLD---RFL-AF 60 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~-------~td~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~~---------~~~~---~~~-~~ 60 (376)
||+++|||||++|||+. .|+....+|. |+.||+|+++||.+.+....... ..+. ++. .+
T Consensus 10 ig~~~l~NRiv~apm~~~~~~~g~~~~~~~~~y~~rA~gG~Glii~e~~~v~~~g~~~~~~~~i~~d~~i~~~~~~~~~v 89 (363)
T 3l5l_A 10 LKDVTLRNRIAIPPMCQYMAEDGMINDWHHVHLAGLARGGAGLLVVEATAVAPEGRITPGCAGIWSDAHAQAFVPVVQAI 89 (363)
T ss_dssp ETTEEESSSEEECCCCCCCCBTTBCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTCCBCSSHHHHHHHHHHHHHH
T ss_pred ECCEEeeCceEECCCCCCcCCCCCCCHHHHHHHHHHHccCceEEEecceeeCccccCCCCcceecCHHHHHHHHHHHHHH
Confidence 68999999999999975 4788888886 77799999999998887532221 1122 222 26
Q ss_pred CCCCCCEEEEecCC------------------------------------C----------------HHHHHHHHHHHHH
Q 017176 61 SPEQHPIVLQIGGS------------------------------------N----------------LDNLAKATELANA 88 (376)
Q Consensus 61 ~~~~~p~~vQL~g~------------------------------------~----------------~~~~~~aa~~~~~ 88 (376)
|..+.++++||++. . .++|++||+++++
T Consensus 90 h~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~ 169 (363)
T 3l5l_A 90 KAAGSVPGIQIAHAGRKASANRPWEGDDHIAADDTRGWETIAPSAIAFGAHLPKVPREMTLDDIARVKQDFVDAARRARD 169 (363)
T ss_dssp HHTTCEEEEEEECCGGGCSBCCGGGTSSBCCTTCTTCCCCEESSSCCCBTTBCCCCEECCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCEEEEEeccCCccccccccccccccccccccCCCcccCCCCCccCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHH
Confidence 78888999999741 0 3689999999999
Q ss_pred CCCCEEEecCC---------CCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCC-CCC-C-ccHHHH
Q 017176 89 YNYDEINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIG-VDD-H-DSYNQL 154 (376)
Q Consensus 89 ~G~d~IeiN~g---------cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g-~~~-~-~~~~~~ 154 (376)
+|||+||||++ ||.. +.|+|+||++++||++++.||+++||+.+ ++||.||++.. +.+ . .+.++.
T Consensus 170 aGfDgVEih~a~GyLl~qFlsp~~-N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~vRis~~~~~~~G~~~~~~~ 248 (363)
T 3l5l_A 170 AGFEWIELHFAHGYLGQSFFSEHS-NKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARFGVLEYDGRDEQTLEES 248 (363)
T ss_dssp HTCSEEEEEECTTSHHHHHHCTTT-CCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEEEEEEEECSSSCHHHHHHHH
T ss_pred cCCCEEEEccccchHHHHccCCCc-CCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEEEEecchhcCCCCCCCHHHH
Confidence 99999999998 6876 58899999999999999999999999998 57999999973 111 1 234555
Q ss_pred HHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcC-cCee
Q 017176 155 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHV 233 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~G-ad~V 233 (376)
.. +++.+++.|+|+|+||+++.......+ .-+...++.+.++++.+ ++|||++|+|.|+++++++++.| ||+|
T Consensus 249 ~~-la~~L~~~Gvd~i~vs~g~~~~~~~~~----~~~~~~~~~~~~ir~~~-~iPVi~~GgI~s~e~a~~~l~~G~aD~V 322 (363)
T 3l5l_A 249 IE-LARRFKAGGLDLLSVSVGFTIPDTNIP----WGPAFMGPIAERVRREA-KLPVTSAWGFGTPQLAEAALQANQLDLV 322 (363)
T ss_dssp HH-HHHHHHHTTCCEEEEEECCCSSCCCCC----CCTTTTHHHHHHHHHHH-TCCEEECSSTTSHHHHHHHHHTTSCSEE
T ss_pred HH-HHHHHHHcCCCEEEEecCccccccccC----CCcchhHHHHHHHHHHc-CCcEEEeCCCCCHHHHHHHHHCCCccEE
Confidence 54 456678899999999976421110000 00112366777777665 89999999999999999999966 9999
Q ss_pred EEchHHhhCCchhhH
Q 017176 234 MVGRAAYQNPWYTLG 248 (376)
Q Consensus 234 miGRa~l~~P~lf~~ 248 (376)
++||+++.||+|+.+
T Consensus 323 ~iGR~~lanPdl~~k 337 (363)
T 3l5l_A 323 SVGRAHLADPHWAYF 337 (363)
T ss_dssp ECCHHHHHCTTHHHH
T ss_pred EecHHHHhCchHHHH
Confidence 999999999999643
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-34 Score=281.27 Aligned_cols=226 Identities=17% Similarity=0.141 Sum_probs=176.1
Q ss_pred CCCeecCCcEEEccCCC--------CChHHHHHHHHHhCCCcEEEecceeeccccccc---------chhhh---hh-cc
Q 017176 2 VARQYLPPWFSVAPMMD--------WTDNHYRTLARLISKHAWLYTEMLAAETIIYQQ---------GNLDR---FL-AF 60 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~--------~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~---------~~~~~---~~-~~ 60 (376)
||+++|||||++|||.. .|+....+|.+++. +|+++||.+.+....... ..+.. +. .+
T Consensus 18 ig~~~lkNRiv~aPm~~~~a~~~g~pt~~~~~yY~~rA~-~GLIite~~~V~~~g~~~~~~~gi~~d~~i~~~k~l~~av 96 (361)
T 3gka_A 18 IGDLTLANRIIMAPLTRARAGDTRTPNALMARYYAERAS-AGLIISEATSVTPQGVGYASTPGIWSPEQVDGWRLVTDAV 96 (361)
T ss_dssp ETTEEESCSEEECCCCCCCSTTTTCCCHHHHHHHHTTTT-SSEEEEEEEESSGGGCCSTTCCBSSSHHHHHHHHHHHHHH
T ss_pred ECCEEecCccEECCCCCCccCCCCCCCHHHHHHHHHHHh-CCEEEEcceeecccccCCCCCCccCCHHHHHHHHHHHHHH
Confidence 68999999999999975 46778888875555 799999998887533221 12222 22 26
Q ss_pred CCCCCCEEEEecCC------------------------------------C------------HHHHHHHHHHHHHCCCC
Q 017176 61 SPEQHPIVLQIGGS------------------------------------N------------LDNLAKATELANAYNYD 92 (376)
Q Consensus 61 ~~~~~p~~vQL~g~------------------------------------~------------~~~~~~aa~~~~~~G~d 92 (376)
|..+.++++||++. . .++|++||++++++|||
T Consensus 97 H~~G~~i~~QL~H~Gr~~~~~~~~g~~~vapS~i~~~~~~~~~~g~~~~~~pr~mt~~eI~~ii~~f~~AA~~A~~aGfD 176 (361)
T 3gka_A 97 HAAGGRIFLQLWHVGRVSDPVFLDGALPVAPSAIAPGGHVSLVRPQRPYVTPRALELDEIPGVVAAFRRGAENARAAGFD 176 (361)
T ss_dssp HHTTCCEEEEEECCTTSCCGGGTTTCCCEESSSCCCSSBCSSCSSCCBCCCCEECCGGGHHHHHHHHHHHHHHHHHTTCS
T ss_pred HhcCCeEEEeeccCCccccccccCCCCcccCCCCCCCCcccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 78899999999641 0 36899999999999999
Q ss_pred EEEecCCC---------CCccccCCCCccccccCCHHHHHHHHHHHhcccCc-cEEEEecCC-----CCCCccHHHHHHH
Q 017176 93 EINLNCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV-PVSVKCRIG-----VDDHDSYNQLCDF 157 (376)
Q Consensus 93 ~IeiN~gc---------P~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~-pv~vKiR~g-----~~~~~~~~~~~~~ 157 (376)
+||||++| |.. +.|+|+||++++||++++.||+++||+.++. ||+||++.. +.+....++...
T Consensus 177 gVEih~a~GYLl~QFLsp~~-N~RtD~yGGslenR~rf~~evv~aVr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~- 254 (361)
T 3gka_A 177 GVEVHGANGYLLDQFLQDSA-NRRTDAYGGSIENRARLLLEVVDAAIDVWSAARVGVHLAPRGDAHTMGDSDPAATFGH- 254 (361)
T ss_dssp EEEEECCTTSHHHHHHSTTT-CCCCSTTSSSHHHHSHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCSCHHHHHHH-
T ss_pred EEEECCcCccHHHhccCccc-ccccCCCCCChhhcHHHHHHHHHHHHHHcCCCeEEEecccccccCCCCCCCcHHHHHH-
Confidence 99999998 875 4889999999999999999999999999853 999999973 111122444444
Q ss_pred HHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHc-CcCeeEEc
Q 017176 158 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVG 236 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~-Gad~VmiG 236 (376)
+++.++++|+|+|+||+++ .+ . +.+.++++.+ ++|||+||+| |+++++++++. +||+|++|
T Consensus 255 la~~l~~~Gvd~i~v~~~~---~~---~----------~~~~~ik~~~-~iPvi~~Ggi-t~e~a~~~l~~G~aD~V~iG 316 (361)
T 3gka_A 255 VARELGRRRIAFLFARESF---GG---D----------AIGQQLKAAF-GGPFIVNENF-TLDSAQAALDAGQADAVAWG 316 (361)
T ss_dssp HHHHHHHTTCSEEEEECCC---ST---T----------CCHHHHHHHH-CSCEEEESSC-CHHHHHHHHHTTSCSEEEES
T ss_pred HHHHHHHcCCCEEEECCCC---CC---H----------HHHHHHHHHc-CCCEEEeCCC-CHHHHHHHHHcCCccEEEEC
Confidence 4667788999999999876 11 0 1234555544 7999999999 99999999995 59999999
Q ss_pred hHHhhCCchhhH
Q 017176 237 RAAYQNPWYTLG 248 (376)
Q Consensus 237 Ra~l~~P~lf~~ 248 (376)
|+++.||||+.+
T Consensus 317 R~~ladPdl~~k 328 (361)
T 3gka_A 317 KLFIANPDLPRR 328 (361)
T ss_dssp HHHHHCTTHHHH
T ss_pred HHhHhCcHHHHH
Confidence 999999999743
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-34 Score=279.38 Aligned_cols=226 Identities=15% Similarity=0.110 Sum_probs=175.9
Q ss_pred CCCeecCCcEEEccCCC--------CChHHHHHHHHHhCCCcEEEecceeeccccccc---------chhhh---hh-cc
Q 017176 2 VARQYLPPWFSVAPMMD--------WTDNHYRTLARLISKHAWLYTEMLAAETIIYQQ---------GNLDR---FL-AF 60 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~--------~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~---------~~~~~---~~-~~ 60 (376)
||+++|||||++|||+. .|+....+|.+.+. +|+++||.+.+....... ..+.. +. .+
T Consensus 10 ig~~~lkNRiv~aPm~~~~a~~~g~pt~~~~~yY~~rA~-~GLIite~~~V~~~g~~~~~~~gi~~d~~i~~~k~l~~av 88 (362)
T 4ab4_A 10 LGDLQLPNRIIMAPLTRCRADEGRVPNALMAEYYVQRAS-AGLILSEATSVSPMGVGYPDTPGIWNDEQVRGWNNVTKAV 88 (362)
T ss_dssp ETTEEESCSEEECCCCCCCCBTTTBCCHHHHHHHHHTTT-SSEEEEEEEESSGGGCCSTTCCBCSSHHHHHHHHHHHHHH
T ss_pred ECCEEeeCccEECCccCCccCCCCCCCHHHHHHHHHHHh-hCEEeeeeeEecccccCCCCCCCcCCHHHHHHHHHHHHHH
Confidence 68899999999999975 46778888876655 799999998887433221 12222 22 26
Q ss_pred CCCCCCEEEEecCCC------------------------------------------------HHHHHHHHHHHHHCCCC
Q 017176 61 SPEQHPIVLQIGGSN------------------------------------------------LDNLAKATELANAYNYD 92 (376)
Q Consensus 61 ~~~~~p~~vQL~g~~------------------------------------------------~~~~~~aa~~~~~~G~d 92 (376)
|..+.++++||++.. .++|++||++++++|||
T Consensus 89 H~~G~~i~~QL~H~Gr~~~~~~~~g~~~vapS~i~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~~a~~aGfD 168 (362)
T 4ab4_A 89 HAAGGRIFLQLWHVGRISHPSYLNGELPVAPSAIQPKGHVSLVRPLSDYPTPRALETEEINDIVEAYRSGAENAKAAGFD 168 (362)
T ss_dssp HHTTCCEEEEEECCTTSCCGGGTTTCCCEESSCCCCSSBCSSCSSCCBCCCCEECCHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HhcCCEEEEEeccCcccccccccCCCcccCCCCCCCCccccccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 788899999996410 36899999999999999
Q ss_pred EEEecCCC---------CCccccCCCCccccccCCHHHHHHHHHHHhcccC-ccEEEEecCCC--C---CCccHHHHHHH
Q 017176 93 EINLNCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGV--D---DHDSYNQLCDF 157 (376)
Q Consensus 93 ~IeiN~gc---------P~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~-~pv~vKiR~g~--~---~~~~~~~~~~~ 157 (376)
+||||++| |.. +.|+|+||++++||++++.||+++||+.++ .||+||++..- + +....++...
T Consensus 169 gVEih~a~GYLl~QFLSp~~-N~RtD~yGGslenR~rf~~eiv~aVr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~- 246 (362)
T 4ab4_A 169 GVEIHGANGYLLDQFLQSST-NQRTDRYGGSLENRARLLLEVTDAAIEVWGAQRVGVHLAPRADAHDMGDADRAETFTY- 246 (362)
T ss_dssp EEEEECCTTSHHHHHHSTTT-CCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCTTHHHHHHH-
T ss_pred EEEECCcCccHHHhhcCCcc-ccccCCCCCchhhHHHHHHHHHHHHHHhcCCCceEEEeeccccccccCCCCcHHHHHH-
Confidence 99999998 875 478999999999999999999999999985 39999999741 1 1122344444
Q ss_pred HHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHc-CcCeeEEc
Q 017176 158 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVG 236 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~-Gad~VmiG 236 (376)
+++.++++|+|+|+||+++ .| . + .+.++++.+ ++|||+||+| |+++++++++. +||+|++|
T Consensus 247 la~~l~~~Gvd~i~v~~~~---~~---~------~----~~~~ik~~~-~iPvi~~Ggi-t~e~a~~~l~~g~aD~V~iG 308 (362)
T 4ab4_A 247 VARELGKRGIAFICSRERE---AD---D------S----IGPLIKEAF-GGPYIVNERF-DKASANAALASGKADAVAFG 308 (362)
T ss_dssp HHHHHHHTTCSEEEEECCC---CT---T------C----CHHHHHHHH-CSCEEEESSC-CHHHHHHHHHTTSCSEEEES
T ss_pred HHHHHHHhCCCEEEECCCC---CC---H------H----HHHHHHHHC-CCCEEEeCCC-CHHHHHHHHHcCCccEEEEC
Confidence 4667788999999999876 11 1 1 234555544 8999999999 99999999995 59999999
Q ss_pred hHHhhCCchhhH
Q 017176 237 RAAYQNPWYTLG 248 (376)
Q Consensus 237 Ra~l~~P~lf~~ 248 (376)
|+++.||||+.+
T Consensus 309 R~~lanPdl~~k 320 (362)
T 4ab4_A 309 VPFIANPDLPAR 320 (362)
T ss_dssp HHHHHCTTHHHH
T ss_pred HHhHhCcHHHHH
Confidence 999999999743
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-33 Score=295.78 Aligned_cols=239 Identities=10% Similarity=0.033 Sum_probs=179.3
Q ss_pred CCCeecCCcEEEccCCCC-Ch----HHHHHHH-HHhCCCcEEEecceeecccccc----------cchh---hhhh-ccC
Q 017176 2 VARQYLPPWFSVAPMMDW-TD----NHYRTLA-RLISKHAWLYTEMLAAETIIYQ----------QGNL---DRFL-AFS 61 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~-td----~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~----------~~~~---~~~~-~~~ 61 (376)
||+++|||||++|||++. ++ ...++|. ++.||+|+++||+++++..... +... .++. .+|
T Consensus 15 ig~~~l~NRiv~apm~~~~~~~~~~~~~~~y~~ra~gG~Gliite~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh 94 (729)
T 1o94_A 15 IGPKTLRNRFYQVPHCIGAGSDKPGFQSAHRSVKAEGGWAALNTEYCSINPESDDTHRLSARIWDEGDVRNLKAMTDEVH 94 (729)
T ss_dssp ETTEEESSSEEECCCCCSCTTTCHHHHHHHHHHHHHTTCSEEEEEEEESSTTSCCTTSCCEECSSHHHHHHHHHHHHHHH
T ss_pred ECCEEECCccEECCCcCCcCCCCcHHHHHHHHHHhcCCCCEEEEcceEecCcccCCCCCCCccCChHHhHHHHHHHHHHH
Confidence 689999999999999874 22 3344554 5668899999999998632211 1111 1222 368
Q ss_pred CCCCCEEEEecCC------------------------C---------------HHHHHHHHHHHHHCCCCEEEecCCC--
Q 017176 62 PEQHPIVLQIGGS------------------------N---------------LDNLAKATELANAYNYDEINLNCGC-- 100 (376)
Q Consensus 62 ~~~~p~~vQL~g~------------------------~---------------~~~~~~aa~~~~~~G~d~IeiN~gc-- 100 (376)
..+.++++||+|. . +++|++||++++++|||+||||++|
T Consensus 95 ~~g~~i~~Ql~h~Gr~~~~~~~~~~~~~ps~~~~~~~~~~~p~~~t~~eI~~~i~~f~~aA~~a~~aGfDgVEih~a~gy 174 (729)
T 1o94_A 95 KYGALAGVELWYGGAHAPNMESRATPRGPSQYASEFETLSYCKEMDLSDIAQVQQFYVDAAKRSRDAGFDIVYVYGAHSY 174 (729)
T ss_dssp TTTCEEEEEEECCGGGSCCTTTCCCCEESSCCBCSSSTTCBCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECTTC
T ss_pred hCCCeEEEEecCCCccccccccCCCCcCCCcccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccch
Confidence 8899999999982 0 3799999999999999999999999
Q ss_pred -------CCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecC-------CCCCCccHHHHHHHHHHHhhc
Q 017176 101 -------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRI-------GVDDHDSYNQLCDFIYKVSSL 164 (376)
Q Consensus 101 -------P~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~-------g~~~~~~~~~~~~~i~~~~e~ 164 (376)
|.. +.|+|+||++++||++++.||+++||+++ ++||++|++. ||+. .++..+ +++++++
T Consensus 175 Ll~qFlsp~~-N~R~D~yGGs~enR~r~~~eiv~avr~~vg~~~pv~vrls~~~~~~~~G~~~---~~~~~~-~~~~l~~ 249 (729)
T 1o94_A 175 LPLQFLNPYY-NKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEA---EVDGQK-FVEMADS 249 (729)
T ss_dssp HHHHHHCTTT-CCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTTSEEEEEEEEECSSCTTSCCT---TTHHHH-HHHHHGG
T ss_pred HHHHhcCCcc-CCCcCcCCCCHHHHhHHHHHHHHHHHHHhCCCceEEEEEccccCcCCCCCCc---hHHHHH-HHHHHHh
Confidence 775 47899999999999999999999999998 7899999986 3431 123333 3456666
Q ss_pred CCccEEEEccCccc-cCCCCCCCCCCCCcc-cHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHc-CcCeeEEchHHhh
Q 017176 165 SPTRHFIIHSRKAL-LNGISPAENRTIPPL-KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQ 241 (376)
Q Consensus 165 ~Gvd~I~vh~r~~~-~~g~~~~~~~~~~~~-~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~-Gad~VmiGRa~l~ 241 (376)
|+|+|+||.+... +.+.... ....++. .+++++++++. .++|||++|+|.|+++++++++. +||+||+||+++.
T Consensus 250 -~~d~~~v~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~-~~~pvi~~G~i~~~~~a~~~l~~g~aD~V~~gR~~l~ 326 (729)
T 1o94_A 250 -LVDMWDITIGDIAEWGEDAGP-SRFYQQGHTIPWVKLVKQV-SKKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIA 326 (729)
T ss_dssp -GCSEEEEEECCSTTGGGTSCC-TTTCCTTTTHHHHHHHHTT-CSSCEECCSCCCCHHHHHHHHHTTSCSBEEESHHHHH
T ss_pred -hcCEEEEeeecccccccccCC-ccccCccccHHHHHHHHHH-CCCEEEEeCCCCCHHHHHHHHHCCCCCEEEeCchhhc
Confidence 7999999987521 0110000 0111222 35666777665 49999999999999999999994 5999999999999
Q ss_pred CCchhhH
Q 017176 242 NPWYTLG 248 (376)
Q Consensus 242 ~P~lf~~ 248 (376)
||||+.+
T Consensus 327 ~P~~~~~ 333 (729)
T 1o94_A 327 DPFLPQK 333 (729)
T ss_dssp CTTHHHH
T ss_pred CchHHHH
Confidence 9999743
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-33 Score=292.03 Aligned_cols=242 Identities=14% Similarity=0.088 Sum_probs=181.8
Q ss_pred CCCeecCCcEEEccCCC-CCh------HHHHHHH-HHhCCCcEEEecceeecccc--cc-------cchhhhh---h-cc
Q 017176 2 VARQYLPPWFSVAPMMD-WTD------NHYRTLA-RLISKHAWLYTEMLAAETII--YQ-------QGNLDRF---L-AF 60 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~-~td------~~~r~~~-~~~Gg~gl~~te~v~~~~~~--~~-------~~~~~~~---~-~~ 60 (376)
||+++||||++||||++ .++ ...++|. ++.||+|+++||+++++... .. +..+..+ . .+
T Consensus 11 ig~~~l~nRi~~apm~~~~~~~~~~~~~~~~~y~~ra~gg~gliite~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 90 (671)
T 1ps9_A 11 LGFTTLKNRVLMGSMHTGLEEYPDGAERLAAFYAERARHGVALIVSGGIAPDLTGVGMEGGAMLNDASQIPHHRTITEAV 90 (671)
T ss_dssp CSSCEESSSEEECCCCCSCTTSTTHHHHHHHHHHHHHHTTCSEEEEEEEBSSSTTCSBTTCCBCCSGGGHHHHHHHHHHH
T ss_pred ECCEEEcCceEECCccCCcCCCCCCcHHHHHHHHHHhcCCCCEEEecccccCccccCCCCCCccCCHHHHHHHHHHHHHH
Confidence 68999999999999987 332 2345554 56688999999999876322 11 1222222 2 36
Q ss_pred CCCCCCEEEEecCC----------------------CH------------HHHHHHHHHHHHCCCCEEEecCCC------
Q 017176 61 SPEQHPIVLQIGGS----------------------NL------------DNLAKATELANAYNYDEINLNCGC------ 100 (376)
Q Consensus 61 ~~~~~p~~vQL~g~----------------------~~------------~~~~~aa~~~~~~G~d~IeiN~gc------ 100 (376)
|..+.++++||+|. .| ++|+++|++++++|||+||||++|
T Consensus 91 h~~g~~i~~Ql~h~Gr~~~~~~~~~ps~~~~~~~~~~p~~~t~~ei~~~i~~~~~aA~~a~~aGfd~veih~~~gyl~~q 170 (671)
T 1ps9_A 91 HQEGGKIALQILHTGRYSYQPHLVAPSALQAPINRFVPHELSHEEILQLIDNFARCAQLAREAGYDGVEVMGSEGYLINE 170 (671)
T ss_dssp HHTTCCEEEEECCCGGGSBSTTCEESSSCCCTTCSSCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECBTSHHHH
T ss_pred HhcCCEEEEEeccCCcccCCCCCcCCCCcccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHH
Confidence 88899999999984 22 799999999999999999999997
Q ss_pred ---CCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCC--CCCccHHHHHHHHHHHhhcCCccEEEEc
Q 017176 101 ---PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGV--DDHDSYNQLCDFIYKVSSLSPTRHFIIH 173 (376)
Q Consensus 101 ---P~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~--~~~~~~~~~~~~i~~~~e~~Gvd~I~vh 173 (376)
|.. +.|+|+||++++||++++.|++++||+.+ ++|+++|++..- ....+.++..++ ++.++++|+|+|++|
T Consensus 171 Flsp~~-n~r~d~yGgs~~~r~r~~~eiv~avr~~vG~~~~v~vrls~~~~~~~g~~~~~~~~~-a~~l~~~g~d~i~v~ 248 (671)
T 1ps9_A 171 FLTLRT-NQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVEL-AQAIEAAGATIINTG 248 (671)
T ss_dssp HHCTTT-CCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHHH-HHHHHHHTCSEEEEE
T ss_pred hCCCcc-CCCcCcCCCcHHHHHHHHHHHHHHHHHHcCCCceEEEEECccccCCCCCCHHHHHHH-HHHHHhcCCCEEEcC
Confidence 664 47899999999999999999999999998 789999999721 111234555543 556778999999999
Q ss_pred cCccccCCCCCCCCCCCCcc-cHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcC-cCeeEEchHHhhCCchhhH
Q 017176 174 SRKALLNGISPAENRTIPPL-KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAAYQNPWYTLG 248 (376)
Q Consensus 174 ~r~~~~~g~~~~~~~~~~~~-~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~G-ad~VmiGRa~l~~P~lf~~ 248 (376)
+++..... +......++. .++.++++++. .++|||++|+|.|+++++++++.| ||+|++||+++.||||+.+
T Consensus 249 ~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~-~~iPvi~~Ggi~~~~~a~~~l~~g~aD~V~~gR~~l~~P~l~~k 322 (671)
T 1ps9_A 249 IGWHEARI--PTIATPVPRGAFSWVTRKLKGH-VSLPLVTTNRINDPQVADDILSRGDADMVSMARPFLADAELLSK 322 (671)
T ss_dssp ECBTTCSS--CSSSTTSCTTTTHHHHHHHTTS-CSSCEEECSSCCSHHHHHHHHHTTSCSEEEESTHHHHCTTHHHH
T ss_pred CCcccccc--ccccccCCcchHHHHHHHHHHh-cCceEEEeCCCCCHHHHHHHHHcCCCCEEEeCHHHHhCcHHHHH
Confidence 87532110 0000111222 24666666655 499999999999999999999955 9999999999999999743
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-33 Score=293.11 Aligned_cols=241 Identities=10% Similarity=0.025 Sum_probs=175.0
Q ss_pred CCCeecCCcEEEccCCCCCh----HHHHHH--HHHhCCCcEEEecceeeccccccc----------chhhh---hh-ccC
Q 017176 2 VARQYLPPWFSVAPMMDWTD----NHYRTL--ARLISKHAWLYTEMLAAETIIYQQ----------GNLDR---FL-AFS 61 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td----~~~r~~--~~~~Gg~gl~~te~v~~~~~~~~~----------~~~~~---~~-~~~ 61 (376)
||+++|||||++|||+..+. ....++ .++.||+|+++||+++++...... ..+.. +. .+|
T Consensus 20 ig~~~l~NRiv~apm~~~~~~~~~~~~~~~~~~~a~gG~gliite~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh 99 (690)
T 3k30_A 20 IGPFTTKNRFYQVPHCNGMGYRDPSAQASMRKIKAEGGWSAVCTEQVEIHATSDIAPFIELRIWDDQDLPALKRIADAIH 99 (690)
T ss_dssp ETTEECSSSEEECCCCCSCSSSCHHHHHHHHHHHHHTTCSEEEEEEEECSGGGCCTTSCCEECSSGGGHHHHHHHHHHHH
T ss_pred ECCEEECCCeEeCCCcCCCCCCChHHHHHHHHHHhccCCEEEEecceEeccccccCCCcCCccCCHHHHHHHHHHHHHHH
Confidence 68999999999999986432 223322 367789999999999987543221 11222 22 367
Q ss_pred CCCCCEEEEecCCC-----------------------------------------HHHHHHHHHHHHHCCCCEEEecCCC
Q 017176 62 PEQHPIVLQIGGSN-----------------------------------------LDNLAKATELANAYNYDEINLNCGC 100 (376)
Q Consensus 62 ~~~~p~~vQL~g~~-----------------------------------------~~~~~~aa~~~~~~G~d~IeiN~gc 100 (376)
..+.++++||++.. .++|++||++++++|||+||||++|
T Consensus 100 ~~g~~i~~Ql~h~Gr~~~~~~~~~~~~~ps~~~~~~~~~~~~~p~~~t~~ei~~~i~~f~~aA~~a~~aGfDgVeih~a~ 179 (690)
T 3k30_A 100 EGGGLAGIELAHNGMNAPNQLSRETPLGPGHLPVAPDTIAPIQARAMTKQDIDDLRRWHRNAVRRSIEAGYDIVYVYGAH 179 (690)
T ss_dssp HTTCEEEEEEECCGGGCCCTTTCCCCEESSSCBSCSSCCCSCBCEECCHHHHHHHHHHHHHHHHHHHHHTCSEEEEEECT
T ss_pred hcCCEEEEEccCCcccccccccCCCccCCCCCcccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccc
Confidence 88999999999510 3899999999999999999999987
Q ss_pred CC---------ccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCC--CCCccHHHHHHHHHHHhhcCCc
Q 017176 101 PS---------PKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGV--DDHDSYNQLCDFIYKVSSLSPT 167 (376)
Q Consensus 101 P~---------~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~--~~~~~~~~~~~~i~~~~e~~Gv 167 (376)
++ ..+.|+|+||++++||++++.||+++|++.+ ++||.+|++..- +...+.++..++ ++.+++ |+
T Consensus 180 gy~L~~qFlsp~~N~R~D~yGGs~enR~r~~~ei~~avr~~~g~~~~v~~r~s~~~~~~~g~~~~~~~~~-~~~l~~-~~ 257 (690)
T 3k30_A 180 GYSGVHHFLSKRYNQRTDEYGGSLENRMRLLRELLEDTLDECAGRAAVACRITVEEEIDGGITREDIEGV-LRELGE-LP 257 (690)
T ss_dssp TCSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTSSEEEEEEECCCCSTTSCCHHHHHHH-HHHHTT-SS
T ss_pred cchHHHHhCCCccCCCccccCCCHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCHHHHHHH-HHHHHh-hc
Confidence 76 1257899999999999999999999999998 456777765421 011234555543 556666 89
Q ss_pred cEEEEccCccccCCCCCCCCCCCCc-ccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHhhCCch
Q 017176 168 RHFIIHSRKALLNGISPAENRTIPP-LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 168 d~I~vh~r~~~~~g~~~~~~~~~~~-~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~l 245 (376)
|+|+||+++..... .+. ...++ ..++.++++++. .++|||+||+|+++++++++++ .+||+|++||++++||||
T Consensus 258 d~~~v~~~~~~~~~-~~~--~~~~~~~~~~~~~~i~~~-~~~pvi~~G~i~~~~~a~~~l~~g~~d~v~~gR~~~~~P~~ 333 (690)
T 3k30_A 258 DLWDFAMGSWEGDS-VTS--RFAPEGRQEEFVAGLKKL-TTKPVVGVGRFTSPDAMVRQIKAGILDLIGAARPSIADPFL 333 (690)
T ss_dssp SEEEEECSCHHHHT-CCT--TTCCTTTTHHHHTTSGGG-CSSCEEECSCCCCHHHHHHHHHTTSCSEEEESHHHHHCTTH
T ss_pred CEEEEecccccccC-CCC--ccCCccccHHHHHHHHHH-cCCeEEEeCCCCCHHHHHHHHHCCCcceEEEcHHhHhCccH
Confidence 99999987521000 000 01111 124555555554 5999999999999999999999 459999999999999999
Q ss_pred hhH
Q 017176 246 TLG 248 (376)
Q Consensus 246 f~~ 248 (376)
+.+
T Consensus 334 ~~~ 336 (690)
T 3k30_A 334 PNK 336 (690)
T ss_dssp HHH
T ss_pred HHH
Confidence 743
|
| >3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=8.8e-33 Score=271.97 Aligned_cols=236 Identities=12% Similarity=0.025 Sum_probs=172.7
Q ss_pred CCCeecCCcEEEccCCC--------CChHHHHHHH-HHhCCCcEEEecceeecccccccc----------hhhh---hh-
Q 017176 2 VARQYLPPWFSVAPMMD--------WTDNHYRTLA-RLISKHAWLYTEMLAAETIIYQQG----------NLDR---FL- 58 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~--------~td~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~~~----------~~~~---~~- 58 (376)
||+++|||||++|||.. .|+....+|. |+.||+|+++||.+.+........ .+.. +.
T Consensus 20 ig~~~LkNRiv~aPm~~~~a~~~g~pt~~~~~yY~~rA~gG~GLIIte~~~V~~~g~~~~~~~~gi~~d~~i~~~k~l~~ 99 (407)
T 3tjl_A 20 VGNNTLQTKIVYPPTTRFRALEDHTPSDLQLQYYGDRSTFPGTLLITEATFVSPQASGYEGAAPGIWTDKHAKAWKVITD 99 (407)
T ss_dssp ETTEEESCSEEBCCCCCCBSCTTSCCBHHHHHHHHHTCCSTTCEEEEEEEESSGGGCCCSSBCCBCSSHHHHHHHHHHHH
T ss_pred ECCEEecCCcEECCCCCCccCCCCCCCHHHHHHHHHHHcCCceEEEEcceEECCccCCCCCcCcccCCHHHHHHHHHHHH
Confidence 68899999999999974 3677888886 556889999999988764332211 1111 22
Q ss_pred ccCCCCCCEEEEecCCC-------------------------------------------------HHH-HHHHHHHHHH
Q 017176 59 AFSPEQHPIVLQIGGSN-------------------------------------------------LDN-LAKATELANA 88 (376)
Q Consensus 59 ~~~~~~~p~~vQL~g~~-------------------------------------------------~~~-~~~aa~~~~~ 88 (376)
.+|..+.++++||++.. .++ |++||+++++
T Consensus 100 avH~~G~~i~~QL~H~Gr~~~~~~~~~~g~~~vapS~i~~~~~~~~~~~~~~~~pr~lt~~eI~~ii~~~~~~aa~~a~~ 179 (407)
T 3tjl_A 100 KVHANGSFVSTQLIFLGRVADPAVMKTRGLNPVSASATYESDAAKEAAEAVGNPVRALTTQEVKDLVYEAYTNAAQKAMD 179 (407)
T ss_dssp HHHHTTCEEEEEEECCGGGSCHHHHHHTTCCCEESSSCCSSHHHHHHHHHTTCCCEECCHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHhcCCEEEEEeccCCCccchhhcccCCCcccCCCCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 36888999999997520 146 9999999999
Q ss_pred CCCCEEEecCCC---------CCccccCCCCccccccCCHHHHHHHHHHHhcccC-ccEEEEecCCCCC------C-c--
Q 017176 89 YNYDEINLNCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDD------H-D-- 149 (376)
Q Consensus 89 ~G~d~IeiN~gc---------P~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~-~pv~vKiR~g~~~------~-~-- 149 (376)
+|||+||||++| |.. +.|+|+||++++||++++.||+++|++.++ .||++|++. |+. . +
T Consensus 180 aGfdgveih~~~GYLl~QFLsp~~-N~r~D~YGGs~enr~r~~~ei~~av~~~~~~~~v~~r~~~-~~~~~g~~~~~d~~ 257 (407)
T 3tjl_A 180 AGFDYIELHAAHGYLLDQFLQPCT-NQRTDEYGGSIENRARLILELIDHLSTIVGADKIGIRISP-WATFQNMKAHKDTV 257 (407)
T ss_dssp TTCSEEEEECCTTSHHHHHHSTTT-CCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECT-TCCGGGCCGGGSSS
T ss_pred hCCCeEEECCccchHHHHhcCccc-cccCCcCCCChhhChHHHHHHHHHHHHHhCCCeEEEEECc-ccccCCCccccccc
Confidence 999999999999 875 478999999999999999999999999985 489999987 332 1 1
Q ss_pred -cHHHHHHHHHHHh---hcCC--ccEEEEc-cCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHH
Q 017176 150 -SYNQLCDFIYKVS---SLSP--TRHFIIH-SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 222 (376)
Q Consensus 150 -~~~~~~~~i~~~~---e~~G--vd~I~vh-~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da 222 (376)
..++... +++.+ ++.| +|+|+|| +|+... ...+..+ .+..+..+++.+ ++|||+||||.+.+++
T Consensus 258 ~~~~~~~~-l~~~L~~~~~~G~~l~ylhv~~~~~~~~-~~~~~~~------~~~~~~~ir~~~-~~PvI~~Ggi~~~~dA 328 (407)
T 3tjl_A 258 HPLTTFSY-LVHELQQRADKGQGIAYISVVEPRVSGN-VDVSEED------QAGDNEFVSKIW-KGVILKAGNYSYDAPE 328 (407)
T ss_dssp CHHHHHHH-HHHHHHHHHHTTCCCSEEEEECTTEETT-EECCGGG------CCCCSHHHHHHC-CSEEEEESCGGGGTTT
T ss_pred ccHHHHHH-HHHHHHhHhhcCCceeEEEEEccccCCC-CcCCccc------hhHHHHHHHHHh-CCCEEecCCCCCHHHH
Confidence 1333333 34455 6688 9999999 553211 0000000 011223344444 7899999999999877
Q ss_pred HHHHH----cCcCeeEEchHHhhCCchhhH
Q 017176 223 NAALR----KGAHHVMVGRAAYQNPWYTLG 248 (376)
Q Consensus 223 ~~~l~----~Gad~VmiGRa~l~~P~lf~~ 248 (376)
.++++ .+||+|++||+++.||||+.+
T Consensus 329 ~~~i~~~~~g~aDlVa~GR~~iaNPdL~~r 358 (407)
T 3tjl_A 329 FKTLKEDIADKRTLVGFSRYFTSNPNLVWK 358 (407)
T ss_dssp THHHHHHHTTSSEEEECSHHHHHCTTHHHH
T ss_pred HHHHHhhccCCCeEEEeChhhhhCchHHHH
Confidence 77665 469999999999999999744
|
| >3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.7e-31 Score=260.85 Aligned_cols=230 Identities=11% Similarity=0.049 Sum_probs=174.4
Q ss_pred CCCeecCCcEEEccCCC---------CC-hHHHHHHHHHhCCCcEEEecceeecccccc---------cchhhh---hh-
Q 017176 2 VARQYLPPWFSVAPMMD---------WT-DNHYRTLARLISKHAWLYTEMLAAETIIYQ---------QGNLDR---FL- 58 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~---------~t-d~~~r~~~~~~Gg~gl~~te~v~~~~~~~~---------~~~~~~---~~- 58 (376)
||+++|||||++|||.. .| +....+|.+.+| +||++||.+.+...... +..+.. +.
T Consensus 13 ig~~~l~NRiv~apm~~~~a~~~~g~pt~~~~~~yY~~rA~-~GLIite~~~v~~~g~~~~~~~gi~~d~~i~~~k~~~~ 91 (379)
T 3aty_A 13 LGRYTLRNRIIMAPLTRCQATEDDHVPRTESMLKYYEDRAS-AGLIIAEATMVQPNYTGFLTEPGIYSDAQIEEWRKIVD 91 (379)
T ss_dssp ETTEEESCSEEECCCCCCCBCTTTCCBCHHHHHHHHHTTTT-SSEEEEEEEESSTTCCSSSSCCBSSSHHHHHHHHHHHH
T ss_pred ECCEEEcCccEECCcCCCcccCCCCccCHHHHHHHHHHHhC-CCeEEECceecccccccCCCCCCcCCHHHHHHHHHHHH
Confidence 68999999999999974 25 677788876665 89999999887643221 111221 21
Q ss_pred ccCCCCCCEEEEecC----------------------------------------------------------------C
Q 017176 59 AFSPEQHPIVLQIGG----------------------------------------------------------------S 74 (376)
Q Consensus 59 ~~~~~~~p~~vQL~g----------------------------------------------------------------~ 74 (376)
.+|..+.++++||++ .
T Consensus 92 avh~~G~~i~~QL~H~Gr~~~~~~~~~~~~~g~~~~~~~~~apS~i~~~~~~~~~~~~~~g~~~~~~~pr~lt~~eI~~~ 171 (379)
T 3aty_A 92 AVHKKGGLIFLQLIHAGRAGIPEKILQQSKSDQDPLAGRLLAASAIPIKDHRIPAYFAASGEKETYGVPEELTDDEVRDG 171 (379)
T ss_dssp HHHHTTCCEEEEEECCGGGSCHHHHTTSCCCSSSTTTTCCEESSSCCCCSCCBCTTTSTTSSCBCCCCCEECCHHHHHHT
T ss_pred HHHhcCCEEEEEeccCCcccCcccccccccCCCCCccCcccCCCCCccccccccccccccccccCCCCCccCCHHHHhHH
Confidence 256777788888742 0
Q ss_pred CHHHHHHHHHHHH-HCCCCEEEecCCC---------CCccccC-CCCccc-cccCCHHHHHHHHHHHhcccC-ccEEEEe
Q 017176 75 NLDNLAKATELAN-AYNYDEINLNCGC---------PSPKVAG-HGCFGV-SLMLDPKFVGEAMSVIAANTN-VPVSVKC 141 (376)
Q Consensus 75 ~~~~~~~aa~~~~-~~G~d~IeiN~gc---------P~~~v~r-~g~yG~-~l~~~~~~~~eiv~~v~~~~~-~pv~vKi 141 (376)
.+++|++||++++ ++|||+||||++| |.. +.| +|+||+ +++||++++.||+++||++++ .||.||+
T Consensus 172 ~i~~f~~AA~~a~~~aGfDgVEih~a~GYLl~QFlsp~~-N~R~~D~yGG~slenR~r~~~eiv~aVr~avg~~~v~vRi 250 (379)
T 3aty_A 172 IIPLFVEGAKNAIFKAGFDGVEIHGANGYLLDAFFRESS-NKRQSGPYAGTTIDTRCQLIYDVTKSVCDAVGSDRVGLRI 250 (379)
T ss_dssp HHHHHHHHHHHHHHTSCCSEEEEEECTTSHHHHHHSTTT-CCCCSSTTCTTSHHHHHHHHHHHHHHHHHHHCGGGEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEcCcCchHHhhccCCCC-CccccCCCCccChhhhHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 1357789999999 9999999999997 765 477 899999 999999999999999999885 4899999
Q ss_pred cCC-C----CCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCC
Q 017176 142 RIG-V----DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 216 (376)
Q Consensus 142 R~g-~----~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI 216 (376)
+.. + .+..+.++..+ +++.+++.|+|+|++|+++.. . . ..+ .+ +.++++.+ ++|||++|+|
T Consensus 251 s~~~~~~~~~~~~~~~~~~~-la~~l~~~Gvd~i~v~~~~~~--~---~---~~~---~~-~~~ir~~~-~iPvi~~G~i 316 (379)
T 3aty_A 251 SPLNGVHGMIDSNPEALTKH-LCKKIEPLSLAYLHYLRGDMV--N---Q---QIG---DV-VAWVRGSY-SGVKISNLRY 316 (379)
T ss_dssp CTTCCGGGCCCSCHHHHHHH-HHHHHGGGCCSEEEEECSCTT--S---C---CCC---CH-HHHHHTTC-CSCEEEESSC
T ss_pred CcccccccCCCCCCHHHHHH-HHHHHHHhCCCEEEEcCCCcC--C---C---Ccc---HH-HHHHHHHC-CCcEEEECCC
Confidence 983 2 12234555554 456678899999999987521 1 0 111 24 56666654 8999999999
Q ss_pred CCHHHHHHHHHc-CcCeeEEchHHhhCCchhhH
Q 017176 217 NTVDEVNAALRK-GAHHVMVGRAAYQNPWYTLG 248 (376)
Q Consensus 217 ~s~~da~~~l~~-Gad~VmiGRa~l~~P~lf~~ 248 (376)
|+++++++++. +||+||+||+++.||||+.+
T Consensus 317 -t~~~a~~~l~~g~aD~V~igR~~l~~P~l~~k 348 (379)
T 3aty_A 317 -DFEEADQQIREGKVDAVAFGAKFIANPDLVER 348 (379)
T ss_dssp -CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHH
T ss_pred -CHHHHHHHHHcCCCeEEEecHHHHhCcHHHHH
Confidence 99999999995 49999999999999999743
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-31 Score=254.30 Aligned_cols=231 Identities=16% Similarity=0.123 Sum_probs=175.5
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccc-------------------hhhhh---hc
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQG-------------------NLDRF---LA 59 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~-------------------~~~~~---~~ 59 (376)
+++++++||+++||...-.+.+++..+...| +|+++|++++.++...+.. ..+.+ +.
T Consensus 6 i~g~~l~npv~~Aag~~~~~~~~~~~~~~~G-~g~i~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~~g~~~~~~~~~ 84 (311)
T 1jub_A 6 FANAKFANPFMNASGVHCMTIEDLEELKASQ-AGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLGFDYYLDYVL 84 (311)
T ss_dssp ETTEEESSSEEECTTSSCSSHHHHHHHHHSS-CSCCBCCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSCHHHHHHHHH
T ss_pred ECCEEcCCCcEECCCCCCCCHHHHHHHHHCC-CCEEEeCccCCcccCCCCCCcEEecccceeecCCCCCccHHHHHHHHH
Confidence 5789999999999744223788888777765 8999999999886322111 01111 11
Q ss_pred -cC-CC--CCCEEEEecCCCHHHHHHHHHHHHHCCCC-EEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC
Q 017176 60 -FS-PE--QHPIVLQIGGSNLDNLAKATELANAYNYD-EINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN 134 (376)
Q Consensus 60 -~~-~~--~~p~~vQL~g~~~~~~~~aa~~~~~~G~d-~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~ 134 (376)
.. +. +.|+++||+|.++++|.+++++++++|+| +||||++||+. .+ |..+..+++.+.++++++++.++
T Consensus 85 ~~~~~~~~~~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~--~g----~~~~g~~~e~~~~iv~~vr~~~~ 158 (311)
T 1jub_A 85 KNQKENAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNV--PG----EPQLAYDFEATEKLLKEVFTFFT 158 (311)
T ss_dssp HHHHHTCSSSCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCS--SS----CCCGGGCHHHHHHHHHHHTTTCC
T ss_pred HHHHhcCCCCCEEEEcCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCCC--CC----cccccCCHHHHHHHHHHHHHhcC
Confidence 11 23 78999999999999999999999999999 99999999996 23 33444688999999999999999
Q ss_pred ccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCcc----c--------------cCCCCCCCCCCCCcccHH
Q 017176 135 VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA----L--------------LNGISPAENRTIPPLKYE 196 (376)
Q Consensus 135 ~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~----~--------------~~g~~~~~~~~~~~~~~~ 196 (376)
+||++|++.+++. + ++.+ +++.++++|+|+|++|+++. . ..|.++ ..+.+..++
T Consensus 159 ~Pv~vKi~~~~~~-~---~~~~-~a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg---~~~~~~~~~ 230 (311)
T 1jub_A 159 KPLGVKLPPYFDL-V---HFDI-MAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGG---AYIKPTALA 230 (311)
T ss_dssp SCEEEEECCCCSH-H---HHHH-HHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEES---GGGHHHHHH
T ss_pred CCEEEEECCCCCH-H---HHHH-HHHHHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCcccc---ccccHHHHH
Confidence 9999999998732 2 3322 34567789999999998751 0 011111 112234477
Q ss_pred HHHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh-CCchhh
Q 017176 197 YYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ-NPWYTL 247 (376)
Q Consensus 197 ~v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~-~P~lf~ 247 (376)
.++++++.+. ++|||++|||.|++|+.++++.|||+||+||+++. +||+|.
T Consensus 231 ~i~~v~~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~vg~~~l~~~p~~~~ 283 (311)
T 1jub_A 231 NVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFD 283 (311)
T ss_dssp HHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHCTHHHH
T ss_pred HHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEchHHHhcCcHHHH
Confidence 8888877653 89999999999999999999999999999999996 999863
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-31 Score=252.76 Aligned_cols=231 Identities=16% Similarity=0.152 Sum_probs=175.0
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeeccccc-------------------ccchhhhh---hc
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIY-------------------QQGNLDRF---LA 59 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~-------------------~~~~~~~~---~~ 59 (376)
+++++++||+++|++..-.+.+++..+...| +|+++|+++++++... .+...+.+ +.
T Consensus 8 i~g~~l~nPi~~Aag~~~~~~~~~~~~~~~G-~g~v~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~~g~~~~~~~~~ 86 (314)
T 2e6f_A 8 LLDHVFANPFMNAAGVLCSTEEDLRCMTASS-SGALVSKSCTSAPRDGNPEPRYMAFPLGSINSMGLPNLGFDFYLKYAS 86 (314)
T ss_dssp ETTEEESSSEEECTTSSCSSHHHHHHHHHSS-CSCEECCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSCHHHHHHHHH
T ss_pred ECCEecCCCcEECCCCCCCCHHHHHHHHHCC-CCEEEeCccCCcccCCCCCCcEEecccceeecCCCCCcCHHHHHHHHH
Confidence 5789999999999876223567766666664 9999999999886321 11111211 11
Q ss_pred -c-CCCCCCEEEEecCCCHHHHHHHHHHHHHCCCC---EEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC
Q 017176 60 -F-SPEQHPIVLQIGGSNLDNLAKATELANAYNYD---EINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN 134 (376)
Q Consensus 60 -~-~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d---~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~ 134 (376)
. ...+.|+++||.|.++++|.+++++++++|+| +||||++||+. .+.+.|| .+++.+.++++++++.++
T Consensus 87 ~~~~~~~~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~--~g~~~~g----~~~~~~~~ii~~vr~~~~ 160 (314)
T 2e6f_A 87 DLHDYSKKPLFLSISGLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNV--PGKPQVA----YDFEAMRTYLQQVSLAYG 160 (314)
T ss_dssp HTCCTTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCS--TTCCCGG----GSHHHHHHHHHHHHHHHC
T ss_pred HHhhcCCCcEEEEeCCCCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCC--CCchhhc----CCHHHHHHHHHHHHHhcC
Confidence 1 22478999999999999999999999999999 99999999986 2333444 688899999999999889
Q ss_pred ccEEEEecCCCCCCccHHHHHHHHHHHhhcCC-ccEEEEccCcc----cc--------------CCCCCCCCCCCCcccH
Q 017176 135 VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSP-TRHFIIHSRKA----LL--------------NGISPAENRTIPPLKY 195 (376)
Q Consensus 135 ~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~G-vd~I~vh~r~~----~~--------------~g~~~~~~~~~~~~~~ 195 (376)
+||+||++.+++. +++.+ +++.++++| +|+|++|+++. .. .|.++ ..+.+..+
T Consensus 161 ~Pv~vK~~~~~~~----~~~~~-~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg---~~~~p~~~ 232 (314)
T 2e6f_A 161 LPFGVKMPPYFDI----AHFDT-AAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGG---KYILPTAL 232 (314)
T ss_dssp SCEEEEECCCCCH----HHHHH-HHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEES---GGGHHHHH
T ss_pred CCEEEEECCCCCH----HHHHH-HHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCc---ccccHHHH
Confidence 9999999988642 23333 345567899 99999998761 00 11111 11223447
Q ss_pred HHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh-CCchhh
Q 017176 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ-NPWYTL 247 (376)
Q Consensus 196 ~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~-~P~lf~ 247 (376)
+.++++++..+++|||++|||+|++|+.++++.|||+||+||+++. +||+|.
T Consensus 233 ~~i~~v~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~ig~~~l~~~p~~~~ 285 (314)
T 2e6f_A 233 ANVNAFYRRCPDKLVFGCGGVYSGEDAFLHILAGASMVQVGTALQEEGPGIFT 285 (314)
T ss_dssp HHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTCSSEEECHHHHHHCTTHHH
T ss_pred HHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhHhcCcHHHH
Confidence 7888888775589999999999999999999999999999999996 999863
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=253.81 Aligned_cols=230 Identities=15% Similarity=0.134 Sum_probs=174.9
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccc-------------------cchhhhhh----
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ-------------------QGNLDRFL---- 58 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~-------------------~~~~~~~~---- 58 (376)
+.|++|+||+++|.-..-.+.++-......| +|.+.+..++.++...+ +...+.++
T Consensus 41 ~~Gl~~~NPv~lAAG~~~~~~e~~~~l~~~G-~G~v~~ktvt~~pq~GNp~PR~~~~~~~~iN~~G~~n~G~~~~~~~l~ 119 (354)
T 4ef8_A 41 LLNNTFANPFMNAAGVMCTTTEELVAMTESA-SGSLVSKSCTPALREGNPTPRYQALPLGSINSMGLPNNGFDFYLAYAA 119 (354)
T ss_dssp ETTEEESSSEEECTTSSCSSHHHHHHHHHSS-CSCEEEEEECSSCBCCSCSCCEEEETTEEEECCCCCBCCHHHHHHHHH
T ss_pred ECCEECCCCCEeccCCCCCCHHHHHHHHHcC-CCeEEeCcccCcccCCCCCCcEEecchhhhccCCCCCcCHHHHHHHHH
Confidence 4589999999999766544555544444554 88888887776532111 11111111
Q ss_pred ccC-CCCCCEEEEecCCCHHHHHHHHHHHH---HCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC
Q 017176 59 AFS-PEQHPIVLQIGGSNLDNLAKATELAN---AYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN 134 (376)
Q Consensus 59 ~~~-~~~~p~~vQL~g~~~~~~~~aa~~~~---~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~ 134 (376)
... ..+.|+++||+|.++++|.++|++++ +.|+|+||||++||+.+ + |.+|+.+++.+.+++++|++.++
T Consensus 120 ~~~~~~~~pvivsI~G~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~~----g--g~~l~~~~e~~~~il~av~~~~~ 193 (354)
T 4ef8_A 120 EQHDYGKKPLFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVP----G--KPQVAYDFDAMRQCLTAVSEVYP 193 (354)
T ss_dssp HTCCTTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCST----T--SCCGGGSHHHHHHHHHHHHHHCC
T ss_pred HHhhcCCCcEEEEeccCCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCCC----C--chhhccCHHHHHHHHHHHHHhhC
Confidence 122 23689999999999999999999998 57899999999999863 2 67788999999999999999999
Q ss_pred ccEEEEecCCCCCCccHHHHHHHHHHHhhcCC-ccEEEEcc------------Ccc------ccCCCCCCCCCCCCcccH
Q 017176 135 VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSP-TRHFIIHS------------RKA------LLNGISPAENRTIPPLKY 195 (376)
Q Consensus 135 ~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~G-vd~I~vh~------------r~~------~~~g~~~~~~~~~~~~~~ 195 (376)
+||+||+|++++. . ++.+ ++.+++++| +|+|+++. |+. ..+|+++ ..++|..|
T Consensus 194 ~PV~vKi~p~~d~-~---~~~~-~a~~~~~~Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG---~~i~p~a~ 265 (354)
T 4ef8_A 194 HSFGVKMPPYFDF-A---HFDA-AAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGG---RYVLPTAL 265 (354)
T ss_dssp SCEEEEECCCCSH-H---HHHH-HHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEG---GGGHHHHH
T ss_pred CCeEEEecCCCCH-H---HHHH-HHHHHHhCCCccEEEEecccCcceeeeccCCccccccccccCCCCC---CCCchHHH
Confidence 9999999998742 2 3333 244556788 99998743 321 1233333 34556779
Q ss_pred HHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC-Cchh
Q 017176 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYT 246 (376)
Q Consensus 196 ~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~-P~lf 246 (376)
+.++++++..+++|||++|||.|++|+.+++..|||+||+||+++.| ||+|
T Consensus 266 ~~i~~v~~~~~~ipII~~GGI~s~~da~~~l~aGAd~V~vgra~l~~GP~~~ 317 (354)
T 4ef8_A 266 ANINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIF 317 (354)
T ss_dssp HHHHHHHHHCTTSEEEEESCCCSHHHHHHHHHHTEEEEEECHHHHHHCTTHH
T ss_pred HHHHHHHHhCCCCCEEEECCcCCHHHHHHHHHcCCCEEEEhHHHHHhCHHHH
Confidence 99999988866899999999999999999999999999999999999 9986
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=244.71 Aligned_cols=231 Identities=14% Similarity=0.163 Sum_probs=171.9
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccc-------------------cchhhhh----h
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ-------------------QGNLDRF----L 58 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~-------------------~~~~~~~----~ 58 (376)
+.+++|+||+++|.-..-.+.++...+...| +|.+.+..++.++...+ +...+.+ .
T Consensus 42 ~~Gl~~~NPv~lAaG~~~~~~e~~~~~~~~G-~G~v~~ktvt~~pq~gnp~PR~~~~~~~~iN~~G~~n~G~~~~~~~l~ 120 (345)
T 3oix_A 42 IGSFDFDNCLMNAAGVYCMTREELAAIDHSE-AGSFVTXTGTLEERAGNPQPRYADTKLGSINSMGLPNLGINYYLDYVT 120 (345)
T ss_dssp ETTEEESCSEEECTTSSCSSHHHHHHHHTSS-CSBCBCCCBCSSCBCCSCSCCEEECSSEEEECCCCCBSCHHHHHHHHH
T ss_pred ECCEECCCCCEEcCCCCCCCHHHHHHHHHcC-CCeEEeeeecCCCCCCCCCCcEEecccchhccCCCCChhHHHHHHHHH
Confidence 4689999999999654445666666666665 89999998887642111 0011111 1
Q ss_pred cc--CCCCCCEEEEecCCCHHHHHHHHHHHHHCCCC-EEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCc
Q 017176 59 AF--SPEQHPIVLQIGGSNLDNLAKATELANAYNYD-EINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135 (376)
Q Consensus 59 ~~--~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d-~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~ 135 (376)
.. ...+.|+++||+|.++++|.++|++++++|+| +||||++||+.+ + |.+|+.+++.+.+++++|++.+++
T Consensus 121 ~~~~~~~~~pvivsI~g~~~~d~~~~a~~l~~~g~~d~ielNisCPn~~----G--~~~l~~~~e~l~~il~av~~~~~~ 194 (345)
T 3oix_A 121 ELQKQPDSKNHFLSLVGMSPEETHTILXMVEASKYQGLVELNLSCPNVP----G--XPQIAYDFETTDQILSEVFTYFTK 194 (345)
T ss_dssp HHHHSTTCCCCEEEECCSSHHHHHHHHHHHHHSSCCSEEEEECSCCCST----T--CCCGGGCHHHHHHHHHHHTTTCCS
T ss_pred HHhhccCCCCEEEEecCCCHHHHHHHHHHHhccCCCcEEEEecCCCCcC----C--chhhcCCHHHHHHHHHHHHHHhCC
Confidence 11 34578999999999999999999999999987 999999999864 2 577889999999999999999999
Q ss_pred cEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEE----------EEccCccc------cCCCCCCCCCCCCcccHHHHH
Q 017176 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHF----------IIHSRKAL------LNGISPAENRTIPPLKYEYYY 199 (376)
Q Consensus 136 pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I----------~vh~r~~~------~~g~~~~~~~~~~~~~~~~v~ 199 (376)
||+||+|+++ +..++++.+. .+...|++.| ++|.++.. .+|+++ +.+.|..++.++
T Consensus 195 PV~vKi~p~~----~~~~~a~~~~-~aga~~i~~int~nt~g~~~~i~~~~~~~~~~~~~gGlSG---~ai~p~a~~~v~ 266 (345)
T 3oix_A 195 PLGIKLPPYF----DIVHFDQAAA-IFNXYPLTFVNCINSIGNGLVIEDETVVIXPKNGFGGIGG---DYVKPTALANVH 266 (345)
T ss_dssp CEEEEECCCC----CHHHHHHHHH-HHTTSCCSEEEECCCEEEEECEETTEESCSGGGGEEEEEE---GGGHHHHHHHHH
T ss_pred CeEEEECCCC----CHHHHHHHHH-HhCCCceEEEEeecccccceeeccCccccccccccCCcCC---ccccHHHHHHHH
Confidence 9999999973 2344443322 2223445433 35655432 233333 234555688999
Q ss_pred HHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchH-HhhCCchhh
Q 017176 200 ALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRA-AYQNPWYTL 247 (376)
Q Consensus 200 ~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa-~l~~P~lf~ 247 (376)
++++.++ ++|||++|||.|++|+.+++++|||+|||||+ ++.+||+|.
T Consensus 267 ~i~~~~~~~ipIIg~GGI~s~~da~~~l~aGAd~V~igra~~~~gP~~~~ 316 (345)
T 3oix_A 267 AFYKRLNPSIQIIGTGGVXTGRDAFEHILCGASMVQIGTALHQEGPQIFK 316 (345)
T ss_dssp HHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCTHHHH
T ss_pred HHHHHcCCCCcEEEECCCCChHHHHHHHHhCCCEEEEChHHHhcChHHHH
Confidence 9988764 79999999999999999999999999999999 789999863
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-30 Score=247.50 Aligned_cols=228 Identities=14% Similarity=0.116 Sum_probs=167.4
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccc---------------------cchhhhhh--
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ---------------------QGNLDRFL-- 58 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~---------------------~~~~~~~~-- 58 (376)
+++++++||+++|++. ..+..++..+.+. |+|+++|++++++..... +.....++
T Consensus 49 i~g~~l~npi~~aag~-~~~~~~~~~~a~~-G~g~i~~~~~~~~~~~g~~~pr~~~~~~d~~~in~~g~~~~g~~~~~~~ 126 (336)
T 1f76_A 49 CMGLTFKNPLGLAAGL-DKDGECIDALGAM-GFGSIEIGTVTPRPQPGNDKPRLFRLVDAEGLINRMGFNNLGVDNLVEN 126 (336)
T ss_dssp ETTEEESSSEEECTTS-STTCCCHHHHHHT-TCSEEEEEEECSSCBCCSCSCCEEEETTTTEEEECCCCCBCCHHHHHHH
T ss_pred ECCEEcCCCcEeCccc-CCcHHHHHHHHHc-CccEEEeCCCCCCCCCCCCCcceeeccccceeeecCCCCCcCHHHHHHH
Confidence 5789999999999753 2223355555555 599999999987643110 01111111
Q ss_pred -ccCCCCCCEEEEecCCC-------HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHh
Q 017176 59 -AFSPEQHPIVLQIGGSN-------LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130 (376)
Q Consensus 59 -~~~~~~~p~~vQL~g~~-------~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~ 130 (376)
.....+.|+++||++++ +++|.++++++.+ |+|+||||++||+.+ |..++++++++.+++++|+
T Consensus 127 ~~~~~~~~~~~v~i~~~~~~~i~~~~~~~~~aa~~~~~-g~d~iein~~sP~~~-------g~~~~~~~~~~~~il~~vr 198 (336)
T 1f76_A 127 VKKAHYDGVLGINIGKNKDTPVEQGKDDYLICMEKIYA-YAGYIAINISSPNTP-------GLRTLQYGEALDDLLTAIK 198 (336)
T ss_dssp HHHCCCCSEEEEEECCCTTSCGGGTHHHHHHHHHHHGG-GCSEEEEECCCSSST-------TGGGGGSHHHHHHHHHHHH
T ss_pred HHhcccCCcEEEEecCCCCCcccccHHHHHHHHHHHhc-cCCEEEEEccCCCCC-------CcccccCHHHHHHHHHHHH
Confidence 11223569999999987 8999999999987 999999999999853 3345578999999999999
Q ss_pred ccc---------CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccC------------CCCCCCCCC
Q 017176 131 ANT---------NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN------------GISPAENRT 189 (376)
Q Consensus 131 ~~~---------~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~------------g~~~~~~~~ 189 (376)
+.+ ++||+||++.+++. +++.+ +++.++++|+|+|+||+++.... |.++ ..
T Consensus 199 ~~~~~~~~~~g~~~Pv~vKi~~~~~~----~~~~~-~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g---~~ 270 (336)
T 1f76_A 199 NKQNDLQAMHHKYVPIAVKIAPDLSE----EELIQ-VADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSG---RP 270 (336)
T ss_dssp HHHHHHHHHHTSCCCEEEECCSCCCH----HHHHH-HHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEE---GG
T ss_pred HHHHhhhhcccccCceEEEecCCCCH----HHHHH-HHHHHHHcCCcEEEEeCCcccccccccccccccCCCcCC---ch
Confidence 987 89999999987653 23332 34566789999999998753111 1111 11
Q ss_pred CCcccHHHHHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh-CCchhh
Q 017176 190 IPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ-NPWYTL 247 (376)
Q Consensus 190 ~~~~~~~~v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~-~P~lf~ 247 (376)
+.+..++.++++++.+. ++|||++|||.|++|+.++++.|||+||+||+++. |||+|.
T Consensus 271 ~~~~~~~~i~~i~~~~~~~ipVi~~GGI~~~~da~~~l~~GAd~V~igr~~l~~~P~~~~ 330 (336)
T 1f76_A 271 LQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIK 330 (336)
T ss_dssp GHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHCCCCEEEeeHHHHhcCcHHHH
Confidence 11233567777776643 79999999999999999999999999999999998 999964
|
| >4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-29 Score=245.08 Aligned_cols=234 Identities=15% Similarity=0.057 Sum_probs=169.1
Q ss_pred CCCeecCCcEEEccCCC--------CChHHHHHHHHHhCCCcEEEecceeeccccccc---------chhh---hhh-cc
Q 017176 2 VARQYLPPWFSVAPMMD--------WTDNHYRTLARLISKHAWLYTEMLAAETIIYQQ---------GNLD---RFL-AF 60 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~--------~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~---------~~~~---~~~-~~ 60 (376)
||+++|||||++|||.. .|+....++.+.++ .|+++||.+.+....... ..+. ++. .+
T Consensus 10 ig~~~lkNRiv~apm~~~~a~~dg~~t~~~~~~y~~rA~-gGliite~~~V~~~g~~~~~~~gi~~d~~i~~~k~l~~av 88 (358)
T 4a3u_A 10 FGAFTAKNRIWMAPLTRGRATRDHVPTEIMAEYYAQRAS-AGLIISEATGISQEGLGWPYAPGIWSDAQVEAWLPITQAV 88 (358)
T ss_dssp ETTEEESCSEEECCCCCCCSCTTCCCCHHHHHHHHHTTT-SSSEEEEEEESSTTTCCSTTCCBCSSHHHHHHHHHHHHHH
T ss_pred ECCEEECCceEEcccCCCccCCCCCCCHHHHHHHHHHcC-CCEEEEeeeEECccccCCCCCcccCchHhHHHHHHHHHHH
Confidence 68999999999999964 47788888876555 599999988876432221 1122 222 36
Q ss_pred CCCCCCEEEEecCCC-----------------------------------------------HHHHHHHHHHHHHCCCCE
Q 017176 61 SPEQHPIVLQIGGSN-----------------------------------------------LDNLAKATELANAYNYDE 93 (376)
Q Consensus 61 ~~~~~p~~vQL~g~~-----------------------------------------------~~~~~~aa~~~~~~G~d~ 93 (376)
|..+.++++||++.. .++|++||++++++|||+
T Consensus 89 h~~G~~i~~QL~H~Gr~~~~~~~g~~~~apS~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~F~~AA~rA~~AGFDg 168 (358)
T 4a3u_A 89 HDAGGLIFAQLWHMGRMVPSNVSGMQPVAPSASQAPGLGHTYDGKKPYDVARALRLDEIPRLLDDYEKAARHALKAGFDG 168 (358)
T ss_dssp HHTTCCEEEEEECCGGGCCHHHHSSCCEESSCEECSSEEECSSSEEECCEEEECCGGGHHHHHHHHHHHHHHHHHTTCSE
T ss_pred HhcCCceeeccccccccccccccccCCCCCcccccCCcccccCCCCCCccCccCCHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 888999999997521 368999999999999999
Q ss_pred EEecCC---------CCCccccCCCCccccccCCHHHHHHHHHHHhcccC-ccEEEEecCCC-----CCCccHHHHHHHH
Q 017176 94 INLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGV-----DDHDSYNQLCDFI 158 (376)
Q Consensus 94 IeiN~g---------cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~-~pv~vKiR~g~-----~~~~~~~~~~~~i 158 (376)
||||++ +|.. |.|+|+|||+++||.+++.||+++||+.++ .++.||+...- .+.++.++.+. +
T Consensus 169 VEIH~ahGYLl~QFLSp~t-N~RtDeYGGS~eNR~Rf~~Eii~avr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~-~ 246 (358)
T 4a3u_A 169 VQIHAANGYLIDEFIRDST-NHRHDEYGGAVENRIRLLKDVTERVIATIGKERTAVRLSPNGEIQGTVDSHPEQVFIP-A 246 (358)
T ss_dssp EEEEECTTSHHHHHHSTTT-CCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECCSSCBTTBCCSSTHHHHHH-H
T ss_pred EeecccCCCcHHhceeccc-CCeeCCCCCCHHHHHHHHHHHHHHHHHHcCccceEEEeccCcccCCCcccchHHHHHH-H
Confidence 999998 6875 589999999999999999999999999884 45778776521 11122333333 3
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcC-cCeeEEch
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGR 237 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~G-ad~VmiGR 237 (376)
++.+++.|++.+.++.+..... .+. ...++ +..++++. ...||+ .|++.|+++++++++.| ||+|.+||
T Consensus 247 ~~~~~~~~~~~i~~~~~~~~~~--~~~--~~~~~----~a~~ik~~-~~~~v~-~~g~~~~~~ae~~l~~G~aD~V~~gR 316 (358)
T 4a3u_A 247 AKMLSDLDIAFLGMREGAVDGT--FGK--TDQPK----LSPEIRKV-FKPPLV-LNQDYTFETAQAALDSGVADAISFGR 316 (358)
T ss_dssp HHHHHHHTCSEEEEECCBTTCS--SSB--CSSCC----CHHHHHHH-CCSCEE-EESSCCHHHHHHHHHHTSCSEEEESH
T ss_pred HHhhhccCccccccccccccCc--ccc--cccHH----HHHHHHHh-cCCcEE-EeCCCCHHHHHHHHHcCCceEeHhhH
Confidence 4556788999999987643111 000 11111 12334443 366666 57788999999999955 99999999
Q ss_pred HHhhCCchhhH
Q 017176 238 AAYQNPWYTLG 248 (376)
Q Consensus 238 a~l~~P~lf~~ 248 (376)
++|+||+|..+
T Consensus 317 ~~ladPdlp~k 327 (358)
T 4a3u_A 317 PFIGNPDLPRR 327 (358)
T ss_dssp HHHHCTTHHHH
T ss_pred HHHhChhHHHH
Confidence 99999999643
|
| >4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-29 Score=250.72 Aligned_cols=239 Identities=11% Similarity=0.032 Sum_probs=162.0
Q ss_pred CCCeecCCcEEEccCCC--------CC--hHHHHHHH-HHhCCCcEEEecceeeccccccc---------chhh---hhh
Q 017176 2 VARQYLPPWFSVAPMMD--------WT--DNHYRTLA-RLISKHAWLYTEMLAAETIIYQQ---------GNLD---RFL 58 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~--------~t--d~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~~---------~~~~---~~~ 58 (376)
||+++|||||++|||+. ++ |...++|. |+.||+|+|+||.+.++...... ..+. ++.
T Consensus 23 ig~l~lkNRiv~aPm~~~~a~~~g~v~~~d~~~~yy~~rA~GG~GLIite~~~V~~~g~~~~~~~gi~~d~~i~~~k~l~ 102 (400)
T 4gbu_A 23 IGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFISPQAGGYDNAPGVWSEEQMVEWTKIF 102 (400)
T ss_dssp ETTEEESSSEEBCCCCCCCCBTTTTBCCTTTHHHHHHHHTCSTTCEEECSCEESSGGGCCCTTSCBSSSHHHHHHHHHHH
T ss_pred ECCEEEcCcCEeCCccCCcCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEcCeEECccccCCCCCCccCCHHHHHHHHHHH
Confidence 68999999999999974 23 45677775 67789999999998876433221 1121 122
Q ss_pred -ccCCCCCCEEEEecCCC--------------------------------------------------HHHHHHHHHHHH
Q 017176 59 -AFSPEQHPIVLQIGGSN--------------------------------------------------LDNLAKATELAN 87 (376)
Q Consensus 59 -~~~~~~~p~~vQL~g~~--------------------------------------------------~~~~~~aa~~~~ 87 (376)
.+|..+.++++||++.. .++|++||++++
T Consensus 103 davH~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~F~~AA~rA~ 182 (400)
T 4gbu_A 103 NAIHEKKSFVWVQLAVLGWAAFPDNLARDGLRYDSASDNVFMDAEQEAKAKKANNPQHSLTKDEIKQYIKEYVQAAKNSI 182 (400)
T ss_dssp HHHHHTTCEEEEEEECCGGGSCHHHHHHTTCCCEESCSSCCSCHHHHHHHHHTTCCCEECCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCceEEeeeecCcccCccccccCCCcccCccccccCCCCcccccccCCCCCccCCHHHHHHHHHHHHHHHHHHH
Confidence 36888999999997521 268999999999
Q ss_pred HCCCCEEEecCC---------CCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCC-C-C------CCc
Q 017176 88 AYNYDEINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIG-V-D------DHD 149 (376)
Q Consensus 88 ~~G~d~IeiN~g---------cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g-~-~------~~~ 149 (376)
++|||+||||++ +|.. |.|+|+|||+++||.+++.||+++||+++ ..||.||++.. + + +..
T Consensus 183 ~AGFDgVEIH~AhGYLl~QFLSp~t-N~RtDeYGGS~ENR~Rf~lEVi~aVr~~vg~d~vgvRlS~~~~~~~~~~~~~~~ 261 (400)
T 4gbu_A 183 AAGADGVEIHSANGYLLNQFLDPHS-NTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMSGGAETG 261 (400)
T ss_dssp HTTCSEEEEECCTTSHHHHHHCTTT-CCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCGGGSTT
T ss_pred hcCcCeeeecccccchHHheecCcC-CCCccccCCcHHHHHHHHHHHHHHHHHHcCCCcEEEEeccccccCCCCccchhh
Confidence 999999999997 6775 58999999999999999999999999988 35888888752 1 1 111
Q ss_pred cHHHHHHHHHHHhhc---CC--ccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHH
Q 017176 150 SYNQLCDFIYKVSSL---SP--TRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNA 224 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~---~G--vd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~ 224 (376)
.+++....+. .++. .| ++.+++................+.... .+.+++..++|||++|+|.+..++.+
T Consensus 262 ~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ir~~~~~pvi~~G~~~~~~~~~~ 335 (400)
T 4gbu_A 262 IVAQYAYVAG-ELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGS-----NDFVYSIWKGPVIRAGNFALHPEVVR 335 (400)
T ss_dssp HHHHHHHHHH-HHHHHHHTTCCCSEEEEECTTCSSTTSCTTTTCCCSCC-----STHHHHHCCSCEEEESSCTTCHHHHH
T ss_pred hHHHHHHHHH-HHHHhhccCccccceeeecccCCCcccccccchhhhHH-----HHHHHHHhCCCEEEeCCCCChHHHHH
Confidence 2333332222 2221 22 445554332111000000000011111 12223345899999999998777666
Q ss_pred HHH-cCcCeeEEchHHhhCCchhh
Q 017176 225 ALR-KGAHHVMVGRAAYQNPWYTL 247 (376)
Q Consensus 225 ~l~-~Gad~VmiGRa~l~~P~lf~ 247 (376)
.+. .+||+|.+||++|+||+|..
T Consensus 336 ~~~~~~aDlV~~gR~~iadPdl~~ 359 (400)
T 4gbu_A 336 EEVKDKRTLIGYGRFFISNPDLVD 359 (400)
T ss_dssp HHTTSTTEEEECCHHHHHCTTHHH
T ss_pred HHHcCCCeEhHHHHHHHHCcHHHH
Confidence 665 78999999999999999964
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=240.35 Aligned_cols=228 Identities=13% Similarity=0.130 Sum_probs=168.6
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccc-c--------------------chhhhhhc-
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ-Q--------------------GNLDRFLA- 59 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~-~--------------------~~~~~~~~- 59 (376)
+.|++++||+++|.-..-+...++.+.. . |.|.+.+..++.++...+ . ...+.+++
T Consensus 54 ~~Gl~~~NPvglAaG~~~~~~~~~~~~~-~-g~G~v~~ktvt~~pq~GNp~PR~~~~~~~~~~iN~~G~~N~G~~~~~~~ 131 (367)
T 3zwt_A 54 VLGHKFRNPVGIAAGFDKHGEAVDGLYK-M-GFGFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINRYGFNSHGLSVVEHR 131 (367)
T ss_dssp ETTEEESSSEEECTTSSTTSSSHHHHHH-T-TCSEEEEEEECSSCBCCSCSCCEEEEGGGTEEEECCCCCBCCHHHHHHH
T ss_pred ECCEEcCCCCEeCCCcCCCHHHHHHHHh-c-CcCeEEeCCccCCCCCCCCCCeEEEecCccceeeccCCCCccHHHHHHH
Confidence 4589999999999654333445555543 4 489999998886632111 0 01111110
Q ss_pred cC----------CCCCCEEEEecCC-----CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHH
Q 017176 60 FS----------PEQHPIVLQIGGS-----NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 124 (376)
Q Consensus 60 ~~----------~~~~p~~vQL~g~-----~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~e 124 (376)
+. ..+.|+++||+++ ++++|+++++.+.+. +|+||||+|||+.+ |..++.+++.+.+
T Consensus 132 l~~~~~~~~~~~~~~~pv~vniggn~~t~~~~~dy~~~~~~~~~~-ad~ielNisCPn~~-------G~~~l~~~~~l~~ 203 (367)
T 3zwt_A 132 LRARQQKQAKLTEDGLPLGVNLGKNKTSVDAAEDYAEGVRVLGPL-ADYLVVNVSSPNTA-------GLRSLQGKAELRR 203 (367)
T ss_dssp HHTTHHHHHHHHHTTCCEEEEECCCTTCSCHHHHHHHHHHHHGGG-CSEEEEECCCTTST-------TGGGGGSHHHHHH
T ss_pred HHHHhhhccccccCCceEEEEEecCCCCCcCHHHHHHHHHHHhhh-CCEEEEECCCCCCC-------CccccCCHHHHHH
Confidence 11 1357999999996 689999999999874 79999999999863 4457889999999
Q ss_pred HHHHHhcc-------cCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCcccc------------CCCCCC
Q 017176 125 AMSVIAAN-------TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL------------NGISPA 185 (376)
Q Consensus 125 iv~~v~~~-------~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~------------~g~~~~ 185 (376)
+++++++. +++||+||+|+++++ +++.+ +++.++++|+|+|++|+++... +|.++
T Consensus 204 ll~av~~~~~~~~~~~~~Pv~vKi~p~~~~-~~~~~----ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG- 277 (367)
T 3zwt_A 204 LLTKVLQERDGLRRVHRPAVLVKIAPDLTS-QDKED----IASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSG- 277 (367)
T ss_dssp HHHHHHHHHHTSCGGGCCEEEEEECSCCCH-HHHHH----HHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEE-
T ss_pred HHHHHHHHHhhccccCCceEEEEeCCCCCH-HHHHH----HHHHHHHcCCCEEEEeCCCcccccccccccccccCCcCC-
Confidence 99999764 689999999998764 22333 3556678999999999886321 22222
Q ss_pred CCCCCCcccHHHHHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHh-hCCchhh
Q 017176 186 ENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY-QNPWYTL 247 (376)
Q Consensus 186 ~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l-~~P~lf~ 247 (376)
..+.+..++.++++++.+. ++|||++|||.|++|+.++++.|||+||+||+++ .+||+|.
T Consensus 278 --~~i~p~a~~~v~~i~~~v~~~ipvI~~GGI~s~~da~~~l~~GAd~V~vgra~l~~gP~~~~ 339 (367)
T 3zwt_A 278 --KPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVG 339 (367)
T ss_dssp --GGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCTHHHH
T ss_pred --cccchhHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHHcCCCEEEECHHHHhcCcHHHH
Confidence 2334455788899888764 7999999999999999999999999999999995 6799863
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.3e-28 Score=240.26 Aligned_cols=228 Identities=14% Similarity=0.160 Sum_probs=169.5
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeeccccccc---------------------chhhhhhc-
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQ---------------------GNLDRFLA- 59 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~---------------------~~~~~~~~- 59 (376)
|++++++||+++|++..-....++.+ ...|+|++.++++++++...+. ...+.+.+
T Consensus 86 i~Gl~~~NPvglAAG~dk~~~~~~~l--~~~GfG~v~~gtvT~~pq~GNp~PR~~rl~e~~~iiN~~GfnN~G~~~~~~~ 163 (443)
T 1tv5_A 86 IKHLDFINPFGVAAGFDKNGVCIDSI--LKLGFSFIEIGTITPRGQTGNAKPRIFRDVESRSIINSCGFNNMGCDKVTEN 163 (443)
T ss_dssp ETTEEESSSEEECTTTTTTCSSHHHH--HTTTCSEEEEEEECSSCBCCSCSCCEEEETTTTEEEECCCSCBSCHHHHHHH
T ss_pred ECCEEeCCCcEECCcccCccHHHHHH--HhcCCCEEEEeeeecCCCCCCCCccEEeccccceeeeccccCChhHHHHHHH
Confidence 57899999999998875444456664 3346999999999986421100 00111110
Q ss_pred ---cCC--------CCCCEEEEecCCC-----HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHH
Q 017176 60 ---FSP--------EQHPIVLQIGGSN-----LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 123 (376)
Q Consensus 60 ---~~~--------~~~p~~vQL~g~~-----~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~ 123 (376)
... ...|+++||++++ +++|+++++.+.+ ++|+||||++||+.+ |..++++++.+.
T Consensus 164 l~~~~~~~~~~~~~~~~~vgvni~~~~~~~~~~~dy~~~a~~l~~-~aD~ieiNiscPnt~-------Glr~lq~~~~l~ 235 (443)
T 1tv5_A 164 LILFRKRQEEDKLLSKHIVGVSIGKNKDTVNIVDDLKYCINKIGR-YADYIAINVSSPNTP-------GLRDNQEAGKLK 235 (443)
T ss_dssp HHHHHHHHHHCSTTTTCEEEEEECCCTTCSCHHHHHHHHHHHHGG-GCSEEEEECCCTTST-------TGGGGGSHHHHH
T ss_pred HHHHhhhcccccccCCceEEEEecCcccchHHHHHHHHHHHHHhc-CCCEEEEeccCCCCc-------ccccccCHHHHH
Confidence 000 1468999999998 9999999999988 799999999999863 677888999999
Q ss_pred HHHHHHhcc--------------------------------------------------cCcc-EEEEecCCCCCCccHH
Q 017176 124 EAMSVIAAN--------------------------------------------------TNVP-VSVKCRIGVDDHDSYN 152 (376)
Q Consensus 124 eiv~~v~~~--------------------------------------------------~~~p-v~vKiR~g~~~~~~~~ 152 (376)
+|+++|++. .++| |+||+++++++ +++.
T Consensus 236 ~il~~v~~~~~~~~~~~~~~~g~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~V~vKispd~~~-ed~~ 314 (443)
T 1tv5_A 236 NIILSVKEEIDNLEKNNIMNDESTYNEDNKIVEKKNNFNKNNSHMMKDAKDNFLWFNTTKKKPLVFVKLAPDLNQ-EQKK 314 (443)
T ss_dssp HHHHHHHHHHHHHC--------------------------------------CCCCSSSSSCCEEEEEECSCCCH-HHHH
T ss_pred HHHHHHHHHHhhhcccCccccccCHHHHHHHHHHhhcccccchhhhhhhhhcchhcccCCCCCeEEEEeCCCCCH-HHHH
Confidence 999999853 3678 99999998764 2233
Q ss_pred HHHHHHHHHhhcCCccEEEEccCcccc----------CCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCCCCHHH
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALL----------NGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDE 221 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~----------~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI~s~~d 221 (376)
+ +++.++++|+|+|++|+++... +|.++ ..+.+..++.++++++... ++|||++|||.|++|
T Consensus 315 ~----iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG---~~~~~~sl~~i~~v~~~v~~~iPVIg~GGI~s~~D 387 (443)
T 1tv5_A 315 E----IADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSG---AKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLD 387 (443)
T ss_dssp H----HHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEE---HHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHH
T ss_pred H----HHHHHHHcCCCEEEEECCCcccccccccccccCCcCC---CcchHHHHHHHHHHHHHcCCCCcEEEECCCCCHHH
Confidence 3 3556678999999999987521 11111 1112234677888887653 899999999999999
Q ss_pred HHHHHHcCcCeeEEchHHhh-CCchhh
Q 017176 222 VNAALRKGAHHVMVGRAAYQ-NPWYTL 247 (376)
Q Consensus 222 a~~~l~~Gad~VmiGRa~l~-~P~lf~ 247 (376)
+.++++.|||+||+||+++. +||++.
T Consensus 388 A~e~l~aGAd~Vqigrall~~gP~l~~ 414 (443)
T 1tv5_A 388 ALEKIEAGASVCQLYSCLVFNGMKSAV 414 (443)
T ss_dssp HHHHHHTTEEEEEESHHHHHHGGGHHH
T ss_pred HHHHHHcCCCEEEEcHHHHhcChHHHH
Confidence 99999999999999999886 999863
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=235.57 Aligned_cols=228 Identities=20% Similarity=0.270 Sum_probs=165.0
Q ss_pred CCCeecCCcEEEcc-CCCCChHHHHHHHHHhCCCcEEEecceeec---------------------ccccccc-hh-hhh
Q 017176 2 VARQYLPPWFSVAP-MMDWTDNHYRTLARLISKHAWLYTEMLAAE---------------------TIIYQQG-NL-DRF 57 (376)
Q Consensus 2 i~~~~l~nri~lAP-M~~~td~~~r~~~~~~Gg~gl~~te~v~~~---------------------~~~~~~~-~~-~~~ 57 (376)
+++++|+||+++|| |.+.++ +++.++.. +|+|.++|+.+... ++.+... .. ...
T Consensus 11 ~~g~~l~npi~~aag~~~~~~-~~~~~~~~-~g~G~~~~~si~~~p~~g~~~p~l~~~~~g~~~~~g~~~~~~~~~~~~~ 88 (311)
T 1ep3_A 11 LPGLDLKNPIIPASGCFGFGE-EYAKYYDL-NKLGSIMVKATTLHPRFGNPTPRVAETASGMLNAIGLQNPGLEVIMTEK 88 (311)
T ss_dssp ETTEEESSSEEECTTSSTTST-TGGGTSCG-GGSSCEEEEEECSSCBCCCCSCCEEEETTEEEECCCCCBCCHHHHHHTH
T ss_pred ECCEECCCCcEECCCCCCCCH-HHHHHHHh-cCCCEEEeCeeccCccCCCCCCeEEECCcccccccCCCCcCHHHHHHHH
Confidence 56899999999999 888775 45444322 45788887755332 2222111 11 111
Q ss_pred h-ccC--CCCCCEEEEecCCCHHHHHHHHHHHHH-CCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc
Q 017176 58 L-AFS--PEQHPIVLQIGGSNLDNLAKATELANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT 133 (376)
Q Consensus 58 ~-~~~--~~~~p~~vQL~g~~~~~~~~aa~~~~~-~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~ 133 (376)
+ .+. ..+.|+++||+++++++|.++++++++ +|+|+||||++||+.+ .+ |..+..+++++.++++++++.+
T Consensus 89 ~~~~~~~~~~~p~~v~l~~~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~-~g----~~~~g~~~~~~~eii~~v~~~~ 163 (311)
T 1ep3_A 89 LPWLNENFPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVK-HG----GQAFGTDPEVAAALVKACKAVS 163 (311)
T ss_dssp HHHHHHHCTTSCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGG-GT----TEEGGGCHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCCCcEEEEEcCCCHHHHHHHHHHHhccCCCCEEEEeCCCCCCC-Cc----hhhhcCCHHHHHHHHHHHHHhc
Confidence 1 122 237899999999999999999999998 9999999999999853 22 4445579999999999999988
Q ss_pred CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccC---------ccc------cCCCCCCCCCCCCcccHHHH
Q 017176 134 NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR---------KAL------LNGISPAENRTIPPLKYEYY 198 (376)
Q Consensus 134 ~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r---------~~~------~~g~~~~~~~~~~~~~~~~v 198 (376)
++||.+|++.++.+. .++ ++.++++|+|+|++++. +.. ..|.++. ...+..++.+
T Consensus 164 ~~pv~vk~~~~~~~~---~~~----a~~l~~~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~---~~~~~~~~~i 233 (311)
T 1ep3_A 164 KVPLYVKLSPNVTDI---VPI----AKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGP---AIKPVALKLI 233 (311)
T ss_dssp SSCEEEEECSCSSCS---HHH----HHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESG---GGHHHHHHHH
T ss_pred CCCEEEEECCChHHH---HHH----HHHHHHcCCCEEEEeCCCcccccCcccCCccccCCCCcccCc---cchHHHHHHH
Confidence 999999999887542 233 33456899999999542 211 0111111 1111224677
Q ss_pred HHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchhh
Q 017176 199 YALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247 (376)
Q Consensus 199 ~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~ 247 (376)
+++++.. ++|||++|||.|++|+.++++.|||+|++||+++.+|+++.
T Consensus 234 ~~i~~~~-~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l~~p~~~~ 281 (311)
T 1ep3_A 234 HQVAQDV-DIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCP 281 (311)
T ss_dssp HHHHTTC-SSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHH
T ss_pred HHHHHhc-CCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHcCcHHHH
Confidence 7777654 99999999999999999999999999999999999999863
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-27 Score=231.26 Aligned_cols=228 Identities=14% Similarity=0.173 Sum_probs=162.6
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccc---------------------cchhhhhh--
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ---------------------QGNLDRFL-- 58 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~---------------------~~~~~~~~-- 58 (376)
+.|++++||+++|.-..-+...++.+. +.| +|.+.+..++.++-.-+ +...+.++
T Consensus 88 ~~Gl~f~NPvglAAG~dk~~~~~~~l~-~lG-fG~vevgtvT~~pq~GNp~PRlfrl~e~~aiiN~~GfnN~G~d~~~~~ 165 (415)
T 3i65_A 88 IKHLDFINPFGVAAGFDKNGVCIDSIL-KLG-FSFIEIGTITPRGQTGNAKPRIFRDVESRSIINSCGFNNMGCDKVTEN 165 (415)
T ss_dssp ETTEEESSSEEECTTSSTTCSSHHHHH-TTT-CSEEEEEEECSSCBCCSCSCCEEEEGGGTEEEECCCSCBCCHHHHHHH
T ss_pred ECCEECCCCCEECCCCCCCHHHHHHHH-HcC-CCeEEeCcccCCcCCCCCCCeEEeccCCCceeecCCCCchhHHHHHHH
Confidence 468999999999975543333444433 454 88888888776532100 00011111
Q ss_pred --cc---CC-----CCCCEEEEecCCC-----HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHH
Q 017176 59 --AF---SP-----EQHPIVLQIGGSN-----LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 123 (376)
Q Consensus 59 --~~---~~-----~~~p~~vQL~g~~-----~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~ 123 (376)
.. .+ ...++++||+++. +++|.++++++.++ +|+||||++||+.+ |..++++++.+.
T Consensus 166 l~~~~~~~~~~~~~~~~~vgvnIg~nk~t~~~~~Dy~~~a~~l~~~-ad~ieiNiScPNt~-------Gl~~lq~~~~l~ 237 (415)
T 3i65_A 166 LILFRKRQEEDKLLSKHIVGVSIGKNKDTVNIVDDLKYCINKIGRY-ADYIAINVSSPNTP-------GLRDNQEAGKLK 237 (415)
T ss_dssp HHHHHHHHTTCGGGTTCEEEEEECCCTTCSCHHHHHHHHHHHHGGG-CSEEEEECCCCC---------------CCHHHH
T ss_pred HHHHHhhccccccccCceEEEEeccccCccccHHHHHHHHHHHHhh-CCEEEEECCCCCCC-------CcccccCHHHHH
Confidence 10 01 2457999999987 89999999999987 89999999999863 677889999999
Q ss_pred HHHHHHhcc--------------------cCcc-EEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccc----
Q 017176 124 EAMSVIAAN--------------------TNVP-VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL---- 178 (376)
Q Consensus 124 eiv~~v~~~--------------------~~~p-v~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~---- 178 (376)
+++++|++. ..+| |+||+++++++ +++.+ +++.++++|+|.|++|+++..
T Consensus 238 ~ll~aV~~~~~~~~~~~~~~~~~~~~~~~~~~P~V~VKi~pd~~~-~~i~~----iA~~a~~aGaDgIiv~Ntt~~r~dl 312 (415)
T 3i65_A 238 NIILSVKEEIDNLEKNNIMNDEFLWFNTTKKKPLVFVKLAPDLNQ-EQKKE----IADVLLETNIDGMIISNTTTQINDI 312 (415)
T ss_dssp HHHHHHHHHHHHHHHHCCSCHHHHCCSSSSSCCEEEEEECSCCCH-HHHHH----HHHHHHHHTCSEEEECCCBSCCCCC
T ss_pred HHHHHHHHHHHhhcccccccccccccccCCCCCeEEEEecCCCCH-HHHHH----HHHHHHHcCCcEEEEeCCCcccccc
Confidence 999999875 2689 99999998865 23333 355667899999999998742
Q ss_pred ------cCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC-Cchhh
Q 017176 179 ------LNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYTL 247 (376)
Q Consensus 179 ------~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~-P~lf~ 247 (376)
.+|.++ ..+.+..++.++++++.+. ++|||++|||.|++|+.++++.|||+|||||+++.+ ||+|.
T Consensus 313 ~~~~~~~GGlSG---~a~~p~al~~I~~v~~~v~~~iPIIg~GGI~s~eDa~e~l~aGAd~VqIgra~l~~GP~~~~ 386 (415)
T 3i65_A 313 KSFENKKGGVSG---AKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAV 386 (415)
T ss_dssp GGGTTCCSEEEE---GGGHHHHHHHHHHHHHHTTTCSCEEECSSCCSHHHHHHHHHHTEEEEEESHHHHHHGGGHHH
T ss_pred cccccccCCcCC---ccchHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHhcCHHHHH
Confidence 122322 2233445678888887754 799999999999999999999999999999999988 99863
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-26 Score=252.43 Aligned_cols=231 Identities=18% Similarity=0.215 Sum_probs=171.2
Q ss_pred CCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccc--cccc----------------------------
Q 017176 3 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETII--YQQG---------------------------- 52 (376)
Q Consensus 3 ~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~--~~~~---------------------------- 52 (376)
.|+.++||+++|||.+.++.+++..+...| .|++.++.++.+... ...+
T Consensus 538 ~G~~~~nPv~lAa~~~~~~~~~~~~~~~~g-~G~vv~~t~~~~~~~~gn~~pr~~~~~~~g~~~~~~~~~~~n~e~~~~~ 616 (1025)
T 1gte_A 538 AGLKFINPFGLASAAPTTSSSMIRRAFEAG-WGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSSFLNIELISEK 616 (1025)
T ss_dssp TTEEESSSEEECSSGGGSSHHHHHHHHHHT-CSEEECCCBCCGGGCCCCCSSCEEECCTTCSCCSSCCSCEEECCCSCSS
T ss_pred ccccccCcccccCCCCCCCHHHHHHHHHCC-cCeEEeceecccccccCCCCccEEeccccccccCCchhheeeeccccch
Confidence 478999999999999888888888777775 899988877654211 0000
Q ss_pred hh-------hhhhccCCCCCCEEEEe-cCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHH
Q 017176 53 NL-------DRFLAFSPEQHPIVLQI-GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 124 (376)
Q Consensus 53 ~~-------~~~~~~~~~~~p~~vQL-~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~e 124 (376)
.. ..+.+. ..+.|+++|+ +|.++++|.+++++++++|+|+|+||++||+. .+.+.||++++++++.+.+
T Consensus 617 ~~~~~~~~i~~~~~~-~~~~~~i~~i~~g~~~~~~~~~a~~~~~~g~d~iein~~~P~~--~~~~~~G~~~~~~~~~~~~ 693 (1025)
T 1gte_A 617 TAAYWCQSVTELKAD-FPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHG--MGERGMGLACGQDPELVRN 693 (1025)
T ss_dssp CHHHHHHHHHHHHHH-CTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCC--CC-----SBGGGCHHHHHH
T ss_pred hHHHHHHHHHHHHhc-CCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCC--CCCCCcccccccCHHHHHH
Confidence 00 011111 1256888888 57899999999999999999999999999986 3345689999999999999
Q ss_pred HHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEc----------------------cCccccCCC
Q 017176 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH----------------------SRKALLNGI 182 (376)
Q Consensus 125 iv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh----------------------~r~~~~~g~ 182 (376)
+++++++.+++||+||++.+.++ +.++ ++.++++|+|+|+++ +|+. .+|.
T Consensus 694 iv~~v~~~~~~Pv~vK~~~~~~~---~~~~----a~~~~~~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~-~gg~ 765 (1025)
T 1gte_A 694 ICRWVRQAVQIPFFAKLTPNVTD---IVSI----ARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTT-YGGV 765 (1025)
T ss_dssp HHHHHHHHCSSCEEEEECSCSSC---HHHH----HHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBC-CEEE
T ss_pred HHHHHHHhhCCceEEEeCCChHH---HHHH----HHHHHHcCCCEEEEecccccccccccccccccccccccccc-CCCC
Confidence 99999999999999999986653 3333 345568999999994 3322 1122
Q ss_pred CCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchhhH
Q 017176 183 SPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLG 248 (376)
Q Consensus 183 ~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~ 248 (376)
++. ...+..++.++++++.++++|||++|||.|++|+.++++.|||+|||||+++.+||.+.+
T Consensus 766 sg~---~~~~~~~~~v~~v~~~~~~ipvi~~GGI~s~~da~~~l~~Ga~~v~vg~~~l~~~~~~~~ 828 (1025)
T 1gte_A 766 SGT---AIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQ 828 (1025)
T ss_dssp ESG---GGHHHHHHHHHHHHHHSTTCCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTSCTTHHH
T ss_pred Ccc---cchhHHHHHHHHHHHHcCCCCEEEecCcCCHHHHHHHHHcCCCEEEEeeccccCCccHHH
Confidence 211 112223567888888766899999999999999999999999999999999986653333
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-24 Score=212.57 Aligned_cols=249 Identities=15% Similarity=0.139 Sum_probs=174.2
Q ss_pred CCCeecCCcEEEccCC--CCC----hHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecC-C
Q 017176 2 VARQYLPPWFSVAPMM--DWT----DNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG-S 74 (376)
Q Consensus 2 i~~~~l~nri~lAPM~--~~t----d~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g-~ 74 (376)
+.+.+++.|+++|||+ +++ +..+++.|+++| +.+++++|.+ ..+ +..... ..+.|+++||++ .
T Consensus 74 i~G~~l~~Pi~iAPma~~g~~~~~~e~~la~aa~~~G-~~~~~s~~~s-~~l-------e~v~~~-~~~~~~~~QLy~~~ 143 (368)
T 2nli_A 74 ILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFG-TIMSISAYSG-ATF-------EEISEG-LNGGPRWFQIYMAK 143 (368)
T ss_dssp ETTEEESSSEEECCCSCGGGTCTTHHHHHHHHHHHHT-CCEEECTTCS-SCH-------HHHHHH-HTTCCEEEEECCBS
T ss_pred ECCEecCCceeecchhhccCCCcHHHHHHHHHHHHcC-CCEEeechHh-HHH-------HHHHHh-CCCCCEEEEEeccC
Confidence 4578899999999998 666 578999999997 7899999886 222 111111 136789999998 7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCcc-----------------ccC----CCCccccc---c--CCHHHHHHHHHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPK-----------------VAG----HGCFGVSL---M--LDPKFVGEAMSV 128 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~-----------------v~r----~g~yG~~l---~--~~~~~~~eiv~~ 128 (376)
+++...+++++++++||+.|+||++||... +.+ ....|+.+ + .++++..+++++
T Consensus 144 d~~~~~~~~~ra~~aG~~ai~it~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~g~~l~~~~~~~d~~~~~~~i~~ 223 (368)
T 2nli_A 144 DDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPIVQRYLRGTAEGMSLNNIYGASKQKISPRDIEE 223 (368)
T ss_dssp SHHHHHHHHHHHHHTTCSCEEEESBCC---CBC--------CCSCCHHHHHHHTTSGGGC-----CTTBCSBCCHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEEcCCCCcccchhHHHhhcccCcchhhhhhcccccCCCCchHHhhhhccCchhhHHHHHH
Confidence 888999999999999999999999999721 110 02236655 2 377888899999
Q ss_pred HhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEcc--CccccCCCCCCCCCCCCcccHHHHHHHHhhCC
Q 017176 129 IAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS--RKALLNGISPAENRTIPPLKYEYYYALLRDFP 206 (376)
Q Consensus 129 v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~--r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~ 206 (376)
+++.+++||+||.- . +.++ ++.++++|+|+|+|++ +.+... .+..++.+.++++.+.
T Consensus 224 lr~~~~~PvivK~v---~---~~e~-----a~~a~~~Gad~I~vs~~ggr~~~~----------g~~~~~~l~~v~~~v~ 282 (368)
T 2nli_A 224 IAGHSGLPVFVKGI---Q---HPED-----ADMAIKRGASGIWVSNHGARQLYE----------APGSFDTLPAIAERVN 282 (368)
T ss_dssp HHHHSSSCEEEEEE---C---SHHH-----HHHHHHTTCSEEEECCGGGTSCSS----------CCCHHHHHHHHHHHHT
T ss_pred HHHHcCCCEEEEcC---C---CHHH-----HHHHHHcCCCEEEEcCCCcCCCCC----------CCChHHHHHHHHHHhC
Confidence 99999999999942 1 2222 3345689999999954 322211 1234788888876654
Q ss_pred -CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhCCCCCcccHHHHHHHHHHHHHHHHHhcCCC
Q 017176 207 -DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNN 285 (376)
Q Consensus 207 -~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (376)
++|||++|||++++|+.+++..|||+|||||+++... .. .|. ....+.++.+.++.+..+..+|.
T Consensus 283 ~~ipVia~GGI~~g~D~~kalalGAd~V~iGr~~l~~~------~~---~G~----~gv~~~l~~l~~el~~~m~~~G~- 348 (368)
T 2nli_A 283 KRVPIVFDSGVRRGEHVAKALASGADVVALGRPVLFGL------AL---GGW----QGAYSVLDYFQKDLTRVMQLTGS- 348 (368)
T ss_dssp TSSCEEECSSCCSHHHHHHHHHTTCSEEEECHHHHHHH------HH---HHH----HHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHH------Hh---cCh----HHHHHHHHHHHHHHHHHHHHhCC-
Confidence 6999999999999999999999999999999655321 11 121 12234555555555666666775
Q ss_pred chHHHHHHHHH
Q 017176 286 RPHVRDVMKPL 296 (376)
Q Consensus 286 ~~~~~~~~k~~ 296 (376)
..+..+++..
T Consensus 349 -~~i~~l~~~~ 358 (368)
T 2nli_A 349 -QNVEDLKGLD 358 (368)
T ss_dssp -SSHHHHHTCC
T ss_pred -cCHHHhcccc
Confidence 2466666543
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-23 Score=202.51 Aligned_cols=256 Identities=12% Similarity=0.048 Sum_probs=163.8
Q ss_pred CCCeecCCcEEEccCCCCC-------hHHHHHHHHHhCCCcEEEecceeeccccccc-chhhhhhccCCCCCCEEEEec-
Q 017176 2 VARQYLPPWFSVAPMMDWT-------DNHYRTLARLISKHAWLYTEMLAAETIIYQQ-GNLDRFLAFSPEQHPIVLQIG- 72 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~t-------d~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~-~~~~~~~~~~~~~~p~~vQL~- 72 (376)
+.+.++++|+++|||++++ +..++..|.++| ++++++++.+. +.... ....+++.....+.|+++|+.
T Consensus 49 i~g~~~~~P~~iApm~g~~~~~~~~~~~~~a~aa~~~G-~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~pv~~~i~~ 125 (349)
T 1p0k_A 49 IGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAG-IPLAVGSQMSA--LKDPSERLSYEIVRKENPNGLIFANLGS 125 (349)
T ss_dssp ETTEEESCSEEEECCCCSCHHHHHHHHHHHHHHHHHHT-CCEECCCCTTT--TTCHHHHHHHHHHHHHCSSSCEEEEEET
T ss_pred ECCcccCCceEEcCccccchhhhhHHHHHHHHHHHHcC-CcEEeccchhc--ccCcccccceehhhhhCCCceeEEeecC
Confidence 4578899999999999999 778999998887 78877777653 11100 111122222345789999999
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHH--HHHHHHHHhcccCccEEEEec-CCCCCCc
Q 017176 73 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKF--VGEAMSVIAANTNVPVSVKCR-IGVDDHD 149 (376)
Q Consensus 73 g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~--~~eiv~~v~~~~~~pv~vKiR-~g~~~~~ 149 (376)
+.+++.+.+ .++.+|+|+|+||++||+.... .. | ++++ +.++++++++.+++||.+|+. .+++
T Consensus 126 ~~~~~~~~~---~~~~~gad~i~i~~~~~~~~~~--~~-~-----~~~~~~~~~~i~~vr~~~~~Pv~vK~~~~~~~--- 191 (349)
T 1p0k_A 126 EATAAQAKE---AVEMIGANALQIHLNVIQEIVM--PE-G-----DRSFSGALKRIEQICSRVSVPVIVKEVGFGMS--- 191 (349)
T ss_dssp TCCHHHHHH---HHHHTTCSEEEEEECTTTTC----------------CTTHHHHHHHHHHHCSSCEEEEEESSCCC---
T ss_pred CCCHHHHHH---HHHhcCCCeEEecccchhhhcC--CC-C-----CcchHHHHHHHHHHHHHcCCCEEEEecCCCCC---
Confidence 778876654 4556899999999999975321 11 2 3443 788999999888999999984 4433
Q ss_pred cHHHHHHHHHHHhhcCCccEEEE--ccCcccc-----CCCCCC-CCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHH
Q 017176 150 SYNQLCDFIYKVSSLSPTRHFII--HSRKALL-----NGISPA-ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE 221 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~~Gvd~I~v--h~r~~~~-----~g~~~~-~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~d 221 (376)
.++ ++.+.++|+|+|+| ||++... ...... ......+..++.+.++.+..+++|||++|||.+++|
T Consensus 192 -~~~-----a~~a~~~Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d 265 (349)
T 1p0k_A 192 -KAS-----AGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQDALD 265 (349)
T ss_dssp -HHH-----HHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEEESSCCSHHH
T ss_pred -HHH-----HHHHHHcCCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHHHHHHHhcCCCeEEEECCCCCHHH
Confidence 222 23345789999999 7765210 000000 000111223677777777655899999999999999
Q ss_pred HHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 017176 222 VNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKP 295 (376)
Q Consensus 222 a~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 295 (376)
+.+++..|||+|||||+++..+.. .| .....+.++.+.+..+..+...|. ..+..++++
T Consensus 266 ~~k~l~~GAd~V~iG~~~l~~~~~---------~g----~~~~~~~~~~~~~~l~~~m~~~G~--~~i~el~~~ 324 (349)
T 1p0k_A 266 VAKAIALGASCTGMAGHFLKALTD---------SG----EEGLLEEIQLILEELKLIMTVLGA--RTIADLQKA 324 (349)
T ss_dssp HHHHHHTTCSEEEECHHHHHHHHH---------HH----HHHHHHHHHHHHHHHHHHHHHHTC--CBHHHHTTC
T ss_pred HHHHHHcCCCEEEEcHHHHHHHhh---------cC----HHHHHHHHHHHHHHHHHHHHHhCC--CCHHHHhhC
Confidence 999999999999999987765421 11 112234455555555555666675 245555554
|
| >3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=197.70 Aligned_cols=232 Identities=15% Similarity=0.132 Sum_probs=154.6
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccc-------------------cchhhhhh----
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ-------------------QGNLDRFL---- 58 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~-------------------~~~~~~~~---- 58 (376)
+.|++|+|||++|.-..-.+.++-......| +|.+.+..++.++...+ +...+.++
T Consensus 41 ~~Gl~f~NPvglAaG~~~~~~e~~~~l~~~G-~G~v~~~tvt~~pq~GNp~PR~~~l~~~~iN~~G~~n~G~~~~~~~~~ 119 (354)
T 3tjx_A 41 LLNNTFANPFMNAAGVMCTTTEELVAMTESA-SGSLVSKSCTPALREGNPTPRYQALPLGSINSMGLPNNGFDFYLAYAA 119 (354)
T ss_dssp ETTEEESSSEEECTTSSCSSHHHHHHHHHSS-CSCEEEEEECSSCBCCSCSCCEEEETTEEEECCCCCBCCHHHHHHHHH
T ss_pred ECCEEcCCCcEEccCCCCCCHHHHHHHHHcC-CCEEEeCCcCcccccCCCCCeEEEcccccccccccCCHHHHHHHHHHH
Confidence 3578999999999643233444444444554 88888887776532111 11111111
Q ss_pred -ccCCCCCCEEEEecCCCHHHHHHHHHHHHHC---CCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC
Q 017176 59 -AFSPEQHPIVLQIGGSNLDNLAKATELANAY---NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN 134 (376)
Q Consensus 59 -~~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~---G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~ 134 (376)
.....+.|+++|++|.+++++.+.++.+.++ ++|+||||++||+.+ . |..+..+++.+.++++++++.+.
T Consensus 120 ~~~~~~~~pvivsi~g~~~~~~~~~~~~~~~~~~~~ad~ielNiScPn~~-----g-~~~l~~~~~~~~~i~~~v~~~~~ 193 (354)
T 3tjx_A 120 EQHDYGKKPLFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVP-----G-KPQVAYDFDAMRQCLTAVSEVYP 193 (354)
T ss_dssp HTCCTTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECC---------------CTTSHHHHHHHHHHHHHHCC
T ss_pred HhhccCCceEEEEEecCChHHHHHHHHHHHHhhhcCCCEEEeeeCCCCCc-----c-hhhhccCHHHHHHHHHHHHHHhh
Confidence 1233467999999999999988888776553 689999999999853 2 56777899999999999999999
Q ss_pred ccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEc----------cCcc--------ccCCCCCCCCCCCCcccHH
Q 017176 135 VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH----------SRKA--------LLNGISPAENRTIPPLKYE 196 (376)
Q Consensus 135 ~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh----------~r~~--------~~~g~~~~~~~~~~~~~~~ 196 (376)
.|+.+|+++++++. ...... ..+.+..+++.++.- .++. ..+|.++ ..+.+...+
T Consensus 194 ~pv~vK~~p~~~~~-~~~~~~---~~~~~~~~~~~i~~i~t~~~~~~id~~~~~~~~~~~~~~GGlSG---~~~~~~a~~ 266 (354)
T 3tjx_A 194 HSFGVKMPPYFDFA-AFDAAA---EILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGG---RYVLPTALA 266 (354)
T ss_dssp SCEEEEECCCCSHH-HHHHHH---HHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEG---GGGHHHHHH
T ss_pred cccccccCCCCCch-hHHHHH---HHHHhhcccchhheecccccccccccccccccccCcccccccCc---hhhHHHHHH
Confidence 99999999988652 222222 122233455544321 1111 1123333 223344466
Q ss_pred HHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHh-hCCchhh
Q 017176 197 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY-QNPWYTL 247 (376)
Q Consensus 197 ~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l-~~P~lf~ 247 (376)
.++++.+..+++|||++|||.|++|+.+++.+|||+||||||++ .+|++|.
T Consensus 267 ~v~~~~~~~~~~pIIg~GGI~s~~Da~e~i~aGAs~Vqv~Ta~~y~GP~~~~ 318 (354)
T 3tjx_A 267 NINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFE 318 (354)
T ss_dssp HHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTEEEEEECHHHHHHCTTHHH
T ss_pred HHHHHHHhcCCCcEEEeCCcCCHHHHHHHHHcCCCEEEEChhhhhcCchHHH
Confidence 77788777778999999999999999999999999999999976 6799863
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.2e-23 Score=201.72 Aligned_cols=209 Identities=15% Similarity=0.147 Sum_probs=151.5
Q ss_pred CCCeecCCcEEEccCCCCChH-------HHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecC-
Q 017176 2 VARQYLPPWFSVAPMMDWTDN-------HYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG- 73 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~-------~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g- 73 (376)
+.+.+++.|+++||| ++++. .+++.|+++| ..+++++|.+ ..+ +..... ..+.|+++||++
T Consensus 88 i~G~~l~~Pi~iAPm-g~~~l~~~~~e~~laraA~~~G-~~~~~s~~~s-~~l-------e~v~~~-~~~~~~~~QLy~~ 156 (392)
T 2nzl_A 88 VLGQRVSMPICVGAT-AMQRMAHVDGELATVRACQSLG-TGMMLSSWAT-SSI-------EEVAEA-GPEALRWLQLYIY 156 (392)
T ss_dssp ETTEEESSSEEECCC-SCGGGTSTTHHHHHHHHHHHHT-CEEEECTTCS-SCH-------HHHHHH-CTTSEEEEEECCB
T ss_pred ECCEecCCceEeccc-cccccccchHHHHHHHHHHHcC-CCeeccchHH-HHH-------HHHHHh-cCCCcEEEEEEec
Confidence 457889999999999 65544 4899999997 7888888875 211 112111 236789999998
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCc---------------ccc-CC--------------CCccc---cccC---
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSP---------------KVA-GH--------------GCFGV---SLML--- 117 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~---------------~v~-r~--------------g~yG~---~l~~--- 117 (376)
.+++...+.+++++++|++.|+||++||.. ++. ++ +. |+ .++.
T Consensus 157 ~d~~~~~~~~~ra~~~G~~al~itvd~p~~g~R~~d~r~~~~lp~~~~~~n~~~~~~~~~p~~~~~~-g~~~~~~~~~~~ 235 (392)
T 2nzl_A 157 KDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGD-DSGLAAYVAKAI 235 (392)
T ss_dssp SSHHHHHHHHHHHHHTTCCCEEEECSCSSCCCCHHHHHHTCCCCTTCCCTTC------------------CHHHHHHHHB
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCCccchhHhHhhccCCccccchhhhhhhhcccCccccccC-cchHHHHHhhcC
Confidence 688899999999999999999999999984 220 00 11 22 2333
Q ss_pred CHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHH
Q 017176 118 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 197 (376)
Q Consensus 118 ~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~ 197 (376)
++++..+.++++++.+++||.+|. +. +.++ ++.++++|+|+|+|+++...+. ...+..++.
T Consensus 236 d~~~~~~~i~~lr~~~~~PvivKg---v~---~~e~-----A~~a~~aGad~I~vs~~ggr~~--------~~g~~~~~~ 296 (392)
T 2nzl_A 236 DPSISWEDIKWLRRLTSLPIVAKG---IL---RGDD-----AREAVKHGLNGILVSNHGARQL--------DGVPATIDV 296 (392)
T ss_dssp CTTCCHHHHHHHC--CCSCEEEEE---EC---CHHH-----HHHHHHTTCCEEEECCGGGTSS--------TTCCCHHHH
T ss_pred ChHHHHHHHHHHHHhhCCCEEEEe---cC---CHHH-----HHHHHHcCCCEEEeCCCCCCcC--------CCCcChHHH
Confidence 777788899999999999999994 32 2222 3345689999999965432111 012234778
Q ss_pred HHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017176 198 YYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 198 v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
+.++++.+. ++|||++|||++++|+.+++..|||+|||||+++.
T Consensus 297 l~~v~~av~~~ipVia~GGI~~g~Dv~kalalGAd~V~iGr~~l~ 341 (392)
T 2nzl_A 297 LPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVW 341 (392)
T ss_dssp HHHHHHHHTTSSEEEECSSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred HHHHHHHcCCCCEEEEECCCCCHHHHHHHHHhCCCeeEECHHHHH
Confidence 888876643 69999999999999999999999999999997664
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-22 Score=198.96 Aligned_cols=247 Identities=15% Similarity=0.170 Sum_probs=172.9
Q ss_pred CCCeecCCcEEEccCCCCChHH-------HHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEec-C
Q 017176 2 VARQYLPPWFSVAPMMDWTDNH-------YRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG-G 73 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~-------~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~-g 73 (376)
+.+.+++.|+++||| ++++.. ++..|+++| ..+++++|.+.. .+.+....+ .|..+||+ +
T Consensus 65 i~G~~~~~Pi~iAPm-g~~~l~~~~~e~a~a~aa~~~G-~~~~~s~~~~~~--------ieev~~~~~--~~~~~QLy~~ 132 (370)
T 1gox_A 65 ILGFKISMPIMIAPT-AMQKMAHPEGEYATARAASAAG-TIMTLSSWATSS--------VEEVASTGP--GIRFFQLYVY 132 (370)
T ss_dssp ETTEEESSSEEECCC-SCGGGTCTTHHHHHHHHHHHTT-CCEEECTTCSSC--------HHHHHTTCC--CCEEEEECCB
T ss_pred ECCcccCCceeEccc-chhhhccchHHHHHHHHHHHcC-CCeeccCCCCCC--------HHHHHhhcC--CCceEEEecC
Confidence 457889999999999 777665 999999997 788888877531 222222222 78999997 7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCc---------------cc-----cC-------CCCccccc------cCCHH
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSP---------------KV-----AG-------HGCFGVSL------MLDPK 120 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~---------------~v-----~r-------~g~yG~~l------~~~~~ 120 (376)
.+++...+.+++++++|++.|+||++||.. ++ .. ... |+.+ +.+++
T Consensus 133 ~d~~~~~~~~~~a~~~G~~ai~it~d~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~-g~~~~~~v~~~~~~~ 211 (370)
T 1gox_A 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKAN-DSGLSSYVAGQIDRS 211 (370)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHTTCCCCTTCCCGGGSSSCCC----------HHHHHHHTBCTT
T ss_pred CCchHHHHHHHHHHHCCCCEEEEeCCCCcccccHHHHHhccCCCcccchhhhhhhhhhcccccc-CccHHHHHHhhcCcc
Confidence 889888999999999999999999999964 11 11 112 4444 44666
Q ss_pred HHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEE--ccCccccCCCCCCCCCCCCcccHHHH
Q 017176 121 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII--HSRKALLNGISPAENRTIPPLKYEYY 198 (376)
Q Consensus 121 ~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~v--h~r~~~~~g~~~~~~~~~~~~~~~~v 198 (376)
+..+.++++++.+++||.+|.... .++ ++.+.++|+|+|+| |++.+... .+..++.+
T Consensus 212 ~~~~~i~~l~~~~~~pv~vK~~~~------~e~-----a~~a~~~Gad~I~vs~~ggr~~~~----------~~~~~~~l 270 (370)
T 1gox_A 212 LSWKDVAWLQTITSLPILVKGVIT------AED-----ARLAVQHGAAGIIVSNHGARQLDY----------VPATIMAL 270 (370)
T ss_dssp CCHHHHHHHHHHCCSCEEEECCCS------HHH-----HHHHHHTTCSEEEECCGGGTSSTT----------CCCHHHHH
T ss_pred chHHHHHHHHHHhCCCEEEEecCC------HHH-----HHHHHHcCCCEEEECCCCCccCCC----------cccHHHHH
Confidence 667889999998999999998742 222 23345799999999 54322111 12347888
Q ss_pred HHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhCCCCCcccHHHHHHHHHHHHHH
Q 017176 199 YALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDA 277 (376)
Q Consensus 199 ~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 277 (376)
.++++..+ ++|||++|||.+++|+.++++.|||+|||||+++.... . .| .....+.++.+.+..+.
T Consensus 271 ~~v~~~~~~~ipvia~GGI~~~~D~~k~l~~GAdaV~iGr~~l~~~~------~---~G----~~gv~~~~~~l~~el~~ 337 (370)
T 1gox_A 271 EEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLA------A---EG----EAGVKKVLQMMRDEFEL 337 (370)
T ss_dssp HHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHH------H---HH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCEEEEECCCCCHHHHHHHHHcCCCEEeecHHHHHHHh------h---cc----HHHHHHHHHHHHHHHHH
Confidence 88877654 79999999999999999999999999999998764321 0 11 11223455566666666
Q ss_pred HHHhcCCCchHHHHHHHHHH
Q 017176 278 ILGTYGNNRPHVRDVMKPLL 297 (376)
Q Consensus 278 ~~~~~~~~~~~~~~~~k~~~ 297 (376)
.+..+|. ..+..++++..
T Consensus 338 ~m~~~G~--~~i~el~~~~l 355 (370)
T 1gox_A 338 TMALSGC--RSLKEISRSHI 355 (370)
T ss_dssp HHHHHTC--SBTTTCCGGGE
T ss_pred HHHHhCC--CCHHHhhhcce
Confidence 6667775 24555666554
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.2e-22 Score=203.26 Aligned_cols=251 Identities=13% Similarity=0.108 Sum_probs=172.0
Q ss_pred CCCeecCCcEEEccCCC---C----ChHHHHHHHHH--hCCCcEEEecceeecccccccchhhhhhccC-CCCCCEEEEe
Q 017176 2 VARQYLPPWFSVAPMMD---W----TDNHYRTLARL--ISKHAWLYTEMLAAETIIYQQGNLDRFLAFS-PEQHPIVLQI 71 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~---~----td~~~r~~~~~--~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~-~~~~p~~vQL 71 (376)
|.|.++++|+++|||++ . ++..+++.|++ +| +++++++|.+.. ...+.... ..+.|..+||
T Consensus 183 i~G~~l~~Pi~iAPma~~~l~~~~~~e~alaraA~~~~~G-~~~~~s~~a~~s--------~e~v~~~~~~~~~~~~~QL 253 (511)
T 1kbi_A 183 MLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTK-VPQMISTLASCS--------PEEIIEAAPSDKQIQWYQL 253 (511)
T ss_dssp ETTEEESSSEEECCCSCGGGTCTTTTHHHHHHHHHSSSSC-CCEEECTTCSSC--------HHHHHHTCCCSSCCEEEEE
T ss_pred cCCccCCCCeEeccchhccccChhhHHHHHHHHHHHhCCC-eeEEeCCcccCC--------HHHHHhhcCCCCCCeEEEE
Confidence 45788999999999997 3 47889999998 87 789888884421 11122222 2457899999
Q ss_pred c-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCc----------------cccC-----CCCccc--ccc---CCHHHHHH
Q 017176 72 G-GSNLDNLAKATELANAYNYDEINLNCGCPSP----------------KVAG-----HGCFGV--SLM---LDPKFVGE 124 (376)
Q Consensus 72 ~-g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~----------------~v~r-----~g~yG~--~l~---~~~~~~~e 124 (376)
+ +.+++.+.+++++++++||++|.||++||+. ++.. .+.+++ .++ .++++..+
T Consensus 254 y~~~d~~~~~~~~~rae~aG~~al~itvd~p~~g~R~~~~r~g~~~p~~~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~ 333 (511)
T 1kbi_A 254 YVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKFIDPSLTWK 333 (511)
T ss_dssp CCCSSHHHHHHHHHHHHHHTCSCEEEECSCSSCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGCBTTBCTTCCHH
T ss_pred eecCCHHHHHHHHHHHHHcCCCEEEEeCCCCCccccHHHHhccCCCCcccccccccccccccccHHHHHhhccChHhHHH
Confidence 8 8889999999999999999999999999971 1110 111121 223 57888889
Q ss_pred HHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEE--ccCccccCCCCCCCCCCCCcccHHHHHHHH
Q 017176 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII--HSRKALLNGISPAENRTIPPLKYEYYYALL 202 (376)
Q Consensus 125 iv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~v--h~r~~~~~g~~~~~~~~~~~~~~~~v~~~~ 202 (376)
+++++++.+++||++|. +.. .++ ++.++++|+|+|+| ||+++...+ +..++.+.+++
T Consensus 334 ~i~~lr~~~~~PvivKg---v~~---~e~-----A~~a~~aGad~I~vs~hgG~~~d~~----------~~~~~~l~~v~ 392 (511)
T 1kbi_A 334 DIEELKKKTKLPIVIKG---VQR---TED-----VIKAAEIGVSGVVLSNHGGRQLDFS----------RAPIEVLAETM 392 (511)
T ss_dssp HHHHHHHHCSSCEEEEE---ECS---HHH-----HHHHHHTTCSEEEECCTTTTSSTTC----------CCHHHHHHHHH
T ss_pred HHHHHHHHhCCcEEEEe---CCC---HHH-----HHHHHHcCCCEEEEcCCCCccCCCC----------CchHHHHHHHH
Confidence 99999999999999993 322 222 33456899999999 555532211 12367777766
Q ss_pred hhC------CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhCCCCCcccHHHHHHHHHHHHH
Q 017176 203 RDF------PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 276 (376)
Q Consensus 203 ~~~------~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 276 (376)
+.+ .++|||++|||++++|+.++|..|||+|||||+++..... .|. ....+.++.+.+..+
T Consensus 393 ~~v~~~~~~~~ipVia~GGI~~g~Dv~kaLalGAdaV~iGr~~l~~~~~---------~G~----~gv~~~l~~l~~el~ 459 (511)
T 1kbi_A 393 PILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSC---------YGR----NGVEKAIEILRDEIE 459 (511)
T ss_dssp HHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHH---------HHH----HHHHHHHHHHHHHHH
T ss_pred HHHHhhccCCCcEEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHHh---------cCh----HHHHHHHHHHHHHHH
Confidence 543 3799999999999999999999999999999966632211 121 122344555555555
Q ss_pred HHHHhcCCCchHHHHHHHHHH
Q 017176 277 AILGTYGNNRPHVRDVMKPLL 297 (376)
Q Consensus 277 ~~~~~~~~~~~~~~~~~k~~~ 297 (376)
..+...|. ..+..+++++.
T Consensus 460 ~~m~~~G~--~~i~el~~~~l 478 (511)
T 1kbi_A 460 MSMRLLGV--TSIAELKPDLL 478 (511)
T ss_dssp HHHHHHTC--CBGGGCCGGGE
T ss_pred HHHHHhCC--CcHHHHhHHHh
Confidence 55666664 23445555543
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.9e-21 Score=185.25 Aligned_cols=192 Identities=13% Similarity=0.025 Sum_probs=146.8
Q ss_pred ecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHHHHHH
Q 017176 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATEL 85 (376)
Q Consensus 6 ~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~aa~~ 85 (376)
.+++||++|||.++|+..++..+.+.||.|++.+++++.+.+......+.++ .+.|+++|++..+++ +.+.++.
T Consensus 10 ~~~~Pii~apM~g~s~~~la~av~~aG~lG~i~~~~~~~~~~~~~i~~i~~~-----~~~p~gvnl~~~~~~-~~~~~~~ 83 (332)
T 2z6i_A 10 KIDYPIFQGGMAWVADGDLAGAVSKAGGLGIIGGGNAPKEVVKANIDKIKSL-----TDKPFGVNIMLLSPF-VEDIVDL 83 (332)
T ss_dssp TCSSSEEECCCTTTCCHHHHHHHHHHTSBEEEECTTCCHHHHHHHHHHHHHH-----CCSCEEEEECTTSTT-HHHHHHH
T ss_pred CCCCCEEeCCCCCCCcHHHHHHHHhCCCcEEeCCCCCCHHHHHHHHHHHHHh-----cCCCEEEEecCCCCC-HHHHHHH
Confidence 4789999999999999999999988898899999987766443222222222 357999999986654 7788888
Q ss_pred HHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcC
Q 017176 86 ANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLS 165 (376)
Q Consensus 86 ~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~ 165 (376)
+.++|+|+|++|+|||.. +++.+++ .++|+.+|+. +.++ ++.+++.
T Consensus 84 a~~~g~d~V~~~~g~p~~---------------------~i~~l~~-~g~~v~~~v~-------~~~~-----a~~~~~~ 129 (332)
T 2z6i_A 84 VIEEGVKVVTTGAGNPSK---------------------YMERFHE-AGIIVIPVVP-------SVAL-----AKRMEKI 129 (332)
T ss_dssp HHHTTCSEEEECSSCGGG---------------------THHHHHH-TTCEEEEEES-------SHHH-----HHHHHHT
T ss_pred HHHCCCCEEEECCCChHH---------------------HHHHHHH-cCCeEEEEeC-------CHHH-----HHHHHHc
Confidence 999999999999998731 3455554 3789988862 2222 2234579
Q ss_pred CccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 166 PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 166 Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
|+|+|.+++... +|..+ ....++.+.++++.. ++|||++|||.|++++.++++.|||+|++||+++.+|..
T Consensus 130 GaD~i~v~g~~~--GG~~g------~~~~~~ll~~i~~~~-~iPViaaGGI~~~~~~~~al~~GAdgV~vGs~~l~~~e~ 200 (332)
T 2z6i_A 130 GADAVIAEGMEA--GGHIG------KLTTMTLVRQVATAI-SIPVIAAGGIADGEGAAAGFMLGAEAVQVGTRFVVAKES 200 (332)
T ss_dssp TCSCEEEECTTS--SEECC------SSCHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTBTTC
T ss_pred CCCEEEEECCCC--CCCCC------CccHHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEecHHHhcCccc
Confidence 999999998642 22211 123478888887765 899999999999999999999999999999999999965
Q ss_pred h
Q 017176 246 T 246 (376)
Q Consensus 246 f 246 (376)
.
T Consensus 201 ~ 201 (332)
T 2z6i_A 201 N 201 (332)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-20 Score=182.15 Aligned_cols=217 Identities=16% Similarity=0.102 Sum_probs=141.5
Q ss_pred CCCeecCCcEEEccCCCCCh------HHHHHHHHHhCCCcEEEecceeeccccc-ccchhhhhhccCCCCCCEE-----E
Q 017176 2 VARQYLPPWFSVAPMMDWTD------NHYRTLARLISKHAWLYTEMLAAETIIY-QQGNLDRFLAFSPEQHPIV-----L 69 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td------~~~r~~~~~~Gg~gl~~te~v~~~~~~~-~~~~~~~~~~~~~~~~p~~-----v 69 (376)
+.+.++++|+++|||++.++ ..++..|+++| .++++++|.++ +.. ......++ .....+.|++ .
T Consensus 52 i~g~~l~~P~~iapm~g~~~~~~~~~~~la~~a~~~G-~~~~~~~~~~~--le~~~~~~~~ql-~~~~~d~pv~~~~~~~ 127 (332)
T 1vcf_A 52 FLGKTLKAPFLIGAMTGGEENGERINLALAEAAEALG-VGMMLGSGRIL--LERPEALRSFRV-RKVAPKALLIANLGLA 127 (332)
T ss_dssp ETTEEESSSEEECCCC---CCHHHHHHHHHHHHHHHT-CEEEEEECHHH--HHCTTTHHHHCC-TTTCSSSCEEEEEEGG
T ss_pred ECCcccCCceEEeccccCCcchhHHHHHHHHHHHHcC-CCEEeCCchhc--ccCCCccceEEe-eccCCCceeecccChh
Confidence 46778999999999998764 48889999997 78999998775 222 11111122 2223467876 6
Q ss_pred EecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEE-ecCCCCCC
Q 017176 70 QIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK-CRIGVDDH 148 (376)
Q Consensus 70 QL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vK-iR~g~~~~ 148 (376)
|+++.+++.+.++++.+ ++|++++|..+...... + |. .+.+.+.++++++++ +++||++| +..|+
T Consensus 128 q~~~~~~~~~~~a~~~~---~~~a~~i~~n~~~~~~~--~--~~---~~~~~~~~~i~~vr~-~~~Pv~vK~v~~g~--- 193 (332)
T 1vcf_A 128 QLRRYGRDDLLRLVEML---EADALAFHVNPLQEAVQ--R--GD---TDFRGLVERLAELLP-LPFPVMVKEVGHGL--- 193 (332)
T ss_dssp GGGTCCHHHHHHHHHHH---TCSEEEEECCHHHHHHT--T--SC---CCCTTHHHHHHHHCS-CSSCEEEECSSSCC---
T ss_pred hhhccChHHHHHHHhhc---CCCceeeccchHHHHhc--C--CC---ccHHHHHHHHHHHHc-CCCCEEEEecCCCC---
Confidence 67777888888877654 56877776543321111 1 11 111237889999999 99999999 54332
Q ss_pred ccHHHHHHHHHHHhhcCCccEEEE--ccCcc-------ccCCCCCCCC-CCCCcccHHHHHHHHhhCCCCeEEEecCCCC
Q 017176 149 DSYNQLCDFIYKVSSLSPTRHFII--HSRKA-------LLNGISPAEN-RTIPPLKYEYYYALLRDFPDLTFTLNGGINT 218 (376)
Q Consensus 149 ~~~~~~~~~i~~~~e~~Gvd~I~v--h~r~~-------~~~g~~~~~~-~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s 218 (376)
+.++ ++.++++|+|+|+| |+++. .......... ....+..++.+.++++...++|||++|||.+
T Consensus 194 -~~e~-----a~~~~~~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~ 267 (332)
T 1vcf_A 194 -SREA-----ALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYT 267 (332)
T ss_dssp -CHHH-----HHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEEESSCCS
T ss_pred -CHHH-----HHHHHHcCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHHHHHHHHHHhcCCCeEEEECCCCC
Confidence 2332 33567899999999 65531 1100000000 0112234777888877655799999999999
Q ss_pred HHHHHHHHHcCcCeeEEchHHhhC
Q 017176 219 VDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 219 ~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
++|+.+++..|||+||+||+++..
T Consensus 268 ~~d~~kal~~GAd~V~igr~~l~~ 291 (332)
T 1vcf_A 268 GTDGAKALALGADLLAVARPLLRP 291 (332)
T ss_dssp HHHHHHHHHHTCSEEEECGGGHHH
T ss_pred HHHHHHHHHhCCChHhhhHHHHHH
Confidence 999999999999999999987643
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-19 Score=178.31 Aligned_cols=248 Identities=16% Similarity=0.072 Sum_probs=169.1
Q ss_pred CCCeecCCcEEEccCCC--C----ChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCC
Q 017176 2 VARQYLPPWFSVAPMMD--W----TDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~--~----td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~ 75 (376)
+.+.++++|+++|||++ . ++..+++.|+++| +++++++ ++..++. ..... .+.+..+||+...
T Consensus 66 i~G~~l~~Pv~iap~~~~~~~~~~~~~~~a~aa~~~G-~~~~vss-~s~~~le-------~i~~~--~~~~~~fQly~~~ 134 (380)
T 1p4c_A 66 VLGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAG-IPFVLST-ASNMSIE-------DLARQ--CDGDLWFQLYVIH 134 (380)
T ss_dssp ETTEEESSSEEECCCSCGGGTSTTHHHHHHHHHHHHT-CCEEECT-TCSSCHH-------HHHHH--CCSCEEEEECCSS
T ss_pred ECCeecCCceEecCccccccCCCcHHHHHHHHHHHcC-CCeecCc-cccCCHH-------HHHhc--cCCCeEEEEEech
Confidence 45789999999999976 4 7889999999997 7888876 3322221 11111 3578999998655
Q ss_pred HHHHHHHHHHHHHCCCCEEEe--------------cCCCCCcc---cc-------CC--CCccccc---cC---CHHHHH
Q 017176 76 LDNLAKATELANAYNYDEINL--------------NCGCPSPK---VA-------GH--GCFGVSL---ML---DPKFVG 123 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~Iei--------------N~gcP~~~---v~-------r~--g~yG~~l---~~---~~~~~~ 123 (376)
++...+..++++++|++.+.| |.||+.+. .. +. ..-+.++ +. +|++..
T Consensus 135 ~~~~~~~i~~a~~aG~~al~vTvd~p~~g~r~~d~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~ala~~~~~~~~p~~~~ 214 (380)
T 1p4c_A 135 REIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKNFEGIDLGKMDKANLEMQAALMSRQMDASFNW 214 (380)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHHTCCCCTTCCCGGGTTCCCSCCSSTTTTTHHHHTSSCCCTTCCH
T ss_pred HHHHHHHHHHHHHcCCCEEEEeecCccccchhHHHhcCCCCccccCHHHhhhhhhhccCcccchHHHHHHHhhcCccccH
Confidence 666777888889999998876 45775331 10 00 0101222 22 677788
Q ss_pred HHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEE--ccCccccCCCCCCCCCCCCcccHHHHHHH
Q 017176 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII--HSRKALLNGISPAENRTIPPLKYEYYYAL 201 (376)
Q Consensus 124 eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~v--h~r~~~~~g~~~~~~~~~~~~~~~~v~~~ 201 (376)
++++++++.+++||.+|. +. +.++ ++.+.++|+|.|+| |++++...+ +..++.+.++
T Consensus 215 ~~i~~i~~~~~~Pv~vkg---v~---t~e~-----a~~a~~aGad~I~vs~~gg~~~d~~----------~~~~~~l~~v 273 (380)
T 1p4c_A 215 EALRWLRDLWPHKLLVKG---LL---SAED-----ADRCIAEGADGVILSNHGGRQLDCA----------ISPMEVLAQS 273 (380)
T ss_dssp HHHHHHHHHCCSEEEEEE---EC---CHHH-----HHHHHHTTCSEEEECCGGGTSCTTC----------CCGGGTHHHH
T ss_pred HHHHHHHHhcCCCEEEEe---cC---cHHH-----HHHHHHcCCCEEEEcCCCCCcCCCC----------cCHHHHHHHH
Confidence 999999999999999994 32 2332 23345799999999 766543222 1236677777
Q ss_pred HhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhCCCCCcccHHHHHHHHHHHHHHHHHh
Q 017176 202 LRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGT 281 (376)
Q Consensus 202 ~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (376)
++.+ ++|||++|||.+++|+.+++..|||+||+||+++.... . .| .....+.++.+.+..+..+..
T Consensus 274 ~~~~-~~pVia~GGI~~~~dv~kal~~GAdaV~iGr~~l~~~~------~---~g----~~~v~~~~~~l~~el~~~m~~ 339 (380)
T 1p4c_A 274 VAKT-GKPVLIDSGFRRGSDIVKALALGAEAVLLGRATLYGLA------A---RG----ETGVDEVLTLLKADIDRTLAQ 339 (380)
T ss_dssp HHHH-CSCEEECSSCCSHHHHHHHHHTTCSCEEESHHHHHHHH------H---HH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHc-CCeEEEECCCCCHHHHHHHHHhCCcHhhehHHHHHHHH------h---cC----HHHHHHHHHHHHHHHHHHHHH
Confidence 7665 67999999999999999999999999999999975321 0 12 122345566666666666777
Q ss_pred cCCCchHHHHHHHHHH
Q 017176 282 YGNNRPHVRDVMKPLL 297 (376)
Q Consensus 282 ~~~~~~~~~~~~k~~~ 297 (376)
+|. ..+..++++..
T Consensus 340 ~G~--~~i~el~~~~l 353 (380)
T 1p4c_A 340 IGC--PDITSLSPDYL 353 (380)
T ss_dssp HTC--CBGGGCCGGGE
T ss_pred hCC--CCHHHhccCeE
Confidence 775 24666677644
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=5.8e-19 Score=172.29 Aligned_cols=215 Identities=16% Similarity=0.134 Sum_probs=140.8
Q ss_pred CCCeecCCcEEEccCCCCChHH------HHHHHHHhCCCcEEEecceee--cccccccchhhhhhccCCCCCCEEEEec-
Q 017176 2 VARQYLPPWFSVAPMMDWTDNH------YRTLARLISKHAWLYTEMLAA--ETIIYQQGNLDRFLAFSPEQHPIVLQIG- 72 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~------~r~~~~~~Gg~gl~~te~v~~--~~~~~~~~~~~~~~~~~~~~~p~~vQL~- 72 (376)
+++.++++|+++|||+|.|+.+ ++..|+++| +++.+.+|..+ ++......+. ..+..+ +.|++.++.
T Consensus 53 ~~g~~l~~Pv~ia~MtGgt~~~~~in~~la~~a~~~G-~~~~vGs~~~~l~~~~~~~s~~~--vr~~ap-~~~~~anlg~ 128 (368)
T 3vkj_A 53 FFRKEISVPVMVTGMTGGRNELGRINKIIAEVAEKFG-IPMGVGSQRVAIEKAEARESFAI--VRKVAP-TIPIIANLGM 128 (368)
T ss_dssp ETTEEESSSEEECCCCCSSHHHHHHHHHHHHHHHHHT-CCEECCCCHHHHHCGGGSHHHHH--HHHHCS-SSCEEEEEEG
T ss_pred ECCEeccCCeEEecCCCCCchhhHHHHHHHHHHHHhC-CCeeeecchhccCCHHHHhhHHH--HHHhCc-CcceecCcCe
Confidence 4678999999999999999877 488899997 88998998655 3222222111 112333 446665544
Q ss_pred ----C-CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHH-HHHHHHHHHhcccCccEEEEecCCCC
Q 017176 73 ----G-SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK-FVGEAMSVIAANTNVPVSVKCRIGVD 146 (376)
Q Consensus 73 ----g-~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~-~~~eiv~~v~~~~~~pv~vKiR~g~~ 146 (376)
+ .+++.+.++++.+ ++|+..|+||. ...+.... |. .+.+ ...+.++++++.+++||.||. .|+.
T Consensus 129 ~ql~~~~~~~~~~~av~~~-~a~al~Ihln~---~~~~~~p~--g~---~~~~~~~~~~i~~i~~~~~vPVivK~-vG~g 198 (368)
T 3vkj_A 129 PQLVKGYGLKEFQDAIQMI-EADAIAVHLNP---AQEVFQPE--GE---PEYQIYALEKLRDISKELSVPIIVKE-SGNG 198 (368)
T ss_dssp GGGGTTCCHHHHHHHHHHT-TCSEEEEECCH---HHHHHSSS--CC---CBCBTHHHHHHHHHHTTCSSCEEEEC-SSSC
T ss_pred eecCCCCCHHHHHHHHHHh-cCCCeEEEecc---hhhhhCCC--CC---chhhHHHHHHHHHHHHHcCCCEEEEe-CCCC
Confidence 4 6788888888777 55555666663 22222111 21 1111 367889999999999999997 5544
Q ss_pred CCccHHHHHHHHHHHhhcCCccEEEE--ccCcccc-----C-----------CCCCCCCCCCCcccHHHHHHHHhhCCCC
Q 017176 147 DHDSYNQLCDFIYKVSSLSPTRHFII--HSRKALL-----N-----------GISPAENRTIPPLKYEYYYALLRDFPDL 208 (376)
Q Consensus 147 ~~~~~~~~~~~i~~~~e~~Gvd~I~v--h~r~~~~-----~-----------g~~~~~~~~~~~~~~~~v~~~~~~~~~i 208 (376)
. +.++ ++.++++|+|+|+| ||+|... + +..-.+| .++ ....+.++.+..+++
T Consensus 199 ~--s~~~-----A~~l~~aGad~I~V~g~GGt~~~~iE~~R~~~~~~~~~~~~~~~~~~-g~p--t~~~l~~v~~~~~~i 268 (368)
T 3vkj_A 199 I--SMET-----AKLLYSYGIKNFDTSGQGGTNWIAIEMIRDIRRGNWKAESAKNFLDW-GVP--TAASIMEVRYSVPDS 268 (368)
T ss_dssp C--CHHH-----HHHHHHTTCCEEECCCBTSBCHHHHHHHHHHHTTCTHHHHHHHTTTC-SCB--HHHHHHHHHHHSTTC
T ss_pred C--CHHH-----HHHHHhCCCCEEEEeCCCCCcccchhhhhcccccccchhhccccccc-ccc--HHHHHHHHHHHcCCC
Confidence 3 2222 33456899999999 4553100 0 0000111 111 235566776666579
Q ss_pred eEEEecCCCCHHHHHHHHHcCcCeeEEchHHh
Q 017176 209 TFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240 (376)
Q Consensus 209 pVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l 240 (376)
|||++|||.++.|+.+++..|||+||+||+++
T Consensus 269 pvia~GGI~~~~d~~kal~lGA~~v~ig~~~l 300 (368)
T 3vkj_A 269 FLVGSGGIRSGLDAAKAIALGADIAGMALPVL 300 (368)
T ss_dssp EEEEESSCCSHHHHHHHHHHTCSEEEECHHHH
T ss_pred cEEEECCCCCHHHHHHHHHcCCCEEEEcHHHH
Confidence 99999999999999999999999999999665
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.8e-18 Score=167.25 Aligned_cols=200 Identities=13% Similarity=0.098 Sum_probs=144.1
Q ss_pred CCcEEEccCCC-CChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHH---------
Q 017176 8 PPWFSVAPMMD-WTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLD--------- 77 (376)
Q Consensus 8 ~nri~lAPM~~-~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~--------- 77 (376)
+.||++|||++ +|+..++..+.++||.|++.+++++++.+......+.+. .+.|+++||+...+.
T Consensus 10 ~~Pii~apMaggvs~~~la~av~~aGglG~i~~~~~s~~~l~~~i~~~~~~-----~~~p~gVnl~~~~~~~~~~~~~~~ 84 (369)
T 3bw2_A 10 PLPIVQAPMAGGVSVPQLAAAVCEAGGLGFLAAGYKTADGMYQEIKRLRGL-----TGRPFGVNVFMPQPELAESGAVEV 84 (369)
T ss_dssp SSSEEECCCTTTTSCHHHHHHHHHTTSBEEEECTTSCHHHHHHHHHHHHHH-----CCSCEEEEEECCCCCC---CHHHH
T ss_pred cCCEEeCCCCCCCCcHHHHHHHHHCCCEEEcCCCCCCHHHHHHHHHHHHHh-----CCCCeEEEEecCCCCcccHHHHHH
Confidence 78999999995 999999999999999999999998887664443333333 246899999875431
Q ss_pred -------------------------HHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcc
Q 017176 78 -------------------------NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN 132 (376)
Q Consensus 78 -------------------------~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~ 132 (376)
.+.+.++.+.+.|+|.|.+|+|||.. ++++.+++
T Consensus 85 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~~~g~~~~--------------------~~i~~~~~- 143 (369)
T 3bw2_A 85 YAHQLAGEAAWYETELGDPDGGRDDGYDAKLAVLLDDPVPVVSFHFGVPDR--------------------EVIARLRR- 143 (369)
T ss_dssp HHHHTHHHHHHTTCCCCCSCSCSSTTHHHHHHHHHHSCCSEEEEESSCCCH--------------------HHHHHHHH-
T ss_pred HHHHHHHHHHHcCCCcCcccccccccHHHHHHHHHhcCCCEEEEeCCCCcH--------------------HHHHHHHH-
Confidence 14566777888999999999998842 23444444
Q ss_pred cCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCcc-ccCCCCCCCCC--CCCcccHHHHHHHHhhCCCCe
Q 017176 133 TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-LLNGISPAENR--TIPPLKYEYYYALLRDFPDLT 209 (376)
Q Consensus 133 ~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~-~~~g~~~~~~~--~~~~~~~~~v~~~~~~~~~ip 209 (376)
.++++.+++. +.++. +.+++.|+|+|.+++... .+.|....... ..+...++.+.++++.. ++|
T Consensus 144 ~g~~v~~~v~-------t~~~a-----~~a~~~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~-~iP 210 (369)
T 3bw2_A 144 AGTLTLVTAT-------TPEEA-----RAVEAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAV-DIP 210 (369)
T ss_dssp TTCEEEEEES-------SHHHH-----HHHHHTTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHC-SSC
T ss_pred CCCeEEEECC-------CHHHH-----HHHHHcCCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhc-Cce
Confidence 3678877652 23332 234579999999987642 11121100000 00012378888887765 899
Q ss_pred EEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchh
Q 017176 210 FTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 246 (376)
Q Consensus 210 Vi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf 246 (376)
||++|||.|++++.++++.|||+|++||+++.+|++.
T Consensus 211 ViaaGGI~~~~~~~~~l~~GAd~V~vGs~~~~~~e~~ 247 (369)
T 3bw2_A 211 VVAAGGIMRGGQIAAVLAAGADAAQLGTAFLATDESG 247 (369)
T ss_dssp EEEESSCCSHHHHHHHHHTTCSEEEESHHHHTSTTCC
T ss_pred EEEECCCCCHHHHHHHHHcCCCEEEEChHHhCCcccC
Confidence 9999999999999999999999999999999999874
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.8e-18 Score=164.50 Aligned_cols=193 Identities=10% Similarity=0.035 Sum_probs=142.6
Q ss_pred CeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHHHH
Q 017176 4 RQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKAT 83 (376)
Q Consensus 4 ~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~aa 83 (376)
.+.+++||++|||+++|+..++..+.+.||.|++.+++++.+.+......+.+. .+.|+++|++..+++ +.+.+
T Consensus 22 ~l~~~~Pii~apM~gvs~~~la~av~~aGglG~i~~~~~~~~~l~~~i~~i~~~-----~~~p~gVnl~~~~~~-~~~~~ 95 (326)
T 3bo9_A 22 LLEIEHPILMGGMAWAGTPTLAAAVSEAGGLGIIGSGAMKPDDLRKAISELRQK-----TDKPFGVNIILVSPW-ADDLV 95 (326)
T ss_dssp HHTCSSSEEECCCTTTSCHHHHHHHHHTTSBEEEECTTCCHHHHHHHHHHHHTT-----CSSCEEEEEETTSTT-HHHHH
T ss_pred hcCCCCCEEECCCCCCCCHHHHHHHHhCCCcEEeCCCCCCHHHHHHHHHHHHHh-----cCCCEEEEEeccCCC-HHHHH
Confidence 356789999999999999999999999999999988777655432221122211 357999999986553 45667
Q ss_pred HHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhh
Q 017176 84 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSS 163 (376)
Q Consensus 84 ~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e 163 (376)
+.+.+.|+|.|.+|+|||.. +++.+++ .++++.+++. +.++. +.++
T Consensus 96 ~~~~~~g~d~V~l~~g~p~~---------------------~~~~l~~-~g~~v~~~v~-------s~~~a-----~~a~ 141 (326)
T 3bo9_A 96 KVCIEEKVPVVTFGAGNPTK---------------------YIRELKE-NGTKVIPVVA-------SDSLA-----RMVE 141 (326)
T ss_dssp HHHHHTTCSEEEEESSCCHH---------------------HHHHHHH-TTCEEEEEES-------SHHHH-----HHHH
T ss_pred HHHHHCCCCEEEECCCCcHH---------------------HHHHHHH-cCCcEEEEcC-------CHHHH-----HHHH
Confidence 77788999999999988731 2333333 3678877652 22222 2245
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017176 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
+.|+|+|.++++.. .|..+ ....++.+.++++.. ++|||++|||.|++++.++++.|||+|++||+++..+
T Consensus 142 ~~GaD~i~v~g~~~--GG~~G------~~~~~~ll~~i~~~~-~iPviaaGGI~~~~dv~~al~~GA~gV~vGs~~~~~~ 212 (326)
T 3bo9_A 142 RAGADAVIAEGMES--GGHIG------EVTTFVLVNKVSRSV-NIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFVASV 212 (326)
T ss_dssp HTTCSCEEEECTTS--SEECC------SSCHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHTBS
T ss_pred HcCCCEEEEECCCC--CccCC------CccHHHHHHHHHHHc-CCCEEEECCCCCHHHHHHHHHhCCCEEEechHHHcCc
Confidence 78999999998653 23222 112478888888765 8999999999999999999999999999999999988
Q ss_pred ch
Q 017176 244 WY 245 (376)
Q Consensus 244 ~l 245 (376)
..
T Consensus 213 e~ 214 (326)
T 3bo9_A 213 ES 214 (326)
T ss_dssp SC
T ss_pred cc
Confidence 75
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=8.5e-18 Score=162.18 Aligned_cols=194 Identities=12% Similarity=0.013 Sum_probs=140.5
Q ss_pred eecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEeccee-ecccccccchhhhhhccCCCCCCEEEEecCCC---HHHHH
Q 017176 5 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLA-AETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN---LDNLA 80 (376)
Q Consensus 5 ~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~-~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~---~~~~~ 80 (376)
+.++.||++|||+++|+..++..+.+.||.|++.+++.+ .+.+....+.+.+. .+.|+.+|++.+. ...+.
T Consensus 12 l~~~~Pii~apM~gvs~~~la~av~~aGglG~i~~~~~~s~~~l~~~i~~i~~~-----~~~p~~v~l~v~~~~~~~~~~ 86 (328)
T 2gjl_A 12 FGVEHPIMQGGMQWVGRAEMAAAVANAGGLATLSALTQPSPEALAAEIARCREL-----TDRPFGVNLTLLPTQKPVPYA 86 (328)
T ss_dssp HTCSSSEEECCCTTTCSHHHHHHHHHTTSBCEEETTTSSSHHHHHHHHHHHHHH-----CSSCCEEEEEECCCSSCCCHH
T ss_pred hCCCCCEEECCCCCCCcHHHHHHHHHCCCeEEeCCCCCCCHHHHHHHHHHHHHh-----cCCCeEEEEeccccccCccHH
Confidence 357889999999999999999999999999999877654 33222111111111 2578999999861 23366
Q ss_pred HHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHH
Q 017176 81 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 160 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~ 160 (376)
+.++.+.+.|+|.|.+|+|||. ++++.+++. ++++.+++. +.++. +
T Consensus 87 ~~~~~~~~~g~d~V~~~~g~p~---------------------~~~~~l~~~-gi~vi~~v~-------t~~~a-----~ 132 (328)
T 2gjl_A 87 EYRAAIIEAGIRVVETAGNDPG---------------------EHIAEFRRH-GVKVIHKCT-------AVRHA-----L 132 (328)
T ss_dssp HHHHHHHHTTCCEEEEEESCCH---------------------HHHHHHHHT-TCEEEEEES-------SHHHH-----H
T ss_pred HHHHHHHhcCCCEEEEcCCCcH---------------------HHHHHHHHc-CCCEEeeCC-------CHHHH-----H
Confidence 7778888899999999988761 234455544 678876642 22222 2
Q ss_pred HhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHh
Q 017176 161 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240 (376)
Q Consensus 161 ~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l 240 (376)
.+++.|+|+|.+++.+. .|+.+.. ....++.+.++++.. ++|||++|||.+++++.++++.|||+|++||+++
T Consensus 133 ~~~~~GaD~i~v~g~~~--GG~~G~~----~~~~~~~l~~v~~~~-~iPviaaGGI~~~~~v~~al~~GAdgV~vGs~~~ 205 (328)
T 2gjl_A 133 KAERLGVDAVSIDGFEC--AGHPGED----DIPGLVLLPAAANRL-RVPIIASGGFADGRGLVAALALGADAINMGTRFL 205 (328)
T ss_dssp HHHHTTCSEEEEECTTC--SBCCCSS----CCCHHHHHHHHHTTC-CSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHH
T ss_pred HHHHcCCCEEEEECCCC--CcCCCCc----cccHHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 24579999999998653 2222111 123578888887654 8999999999999999999999999999999999
Q ss_pred hCCc
Q 017176 241 QNPW 244 (376)
Q Consensus 241 ~~P~ 244 (376)
.+|.
T Consensus 206 ~~~e 209 (328)
T 2gjl_A 206 ATRE 209 (328)
T ss_dssp TSSS
T ss_pred cCcc
Confidence 9988
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=7.9e-18 Score=162.92 Aligned_cols=199 Identities=13% Similarity=0.074 Sum_probs=141.9
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhc-cCCCCCCEEEEecCCCHHHHH
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA-FSPEQHPIVLQIGGSNLDNLA 80 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~-~~~~~~p~~vQL~g~~~~~~~ 80 (376)
+.++.+++||++|||+++|+.+++..+.+.||.+++.+++... ...+++ ..+.+.|+.+|+ |.+++.+.
T Consensus 40 i~g~~l~~Pi~~a~mag~s~~~la~a~~~~gg~g~~~~~~~~~---------~~~~i~~~~~~g~~v~v~~-g~~~~~~~ 109 (336)
T 1ypf_A 40 LGKHKFKLPVVPANMQTIIDERIATYLAENNYFYIMHRFQPEK---------RISFIRDMQSRGLIASISV-GVKEDEYE 109 (336)
T ss_dssp ETTEEESSSEEECSSTTTCCHHHHHHHHHTTCCCCCCCSSGGG---------HHHHHHHHHHTTCCCEEEE-CCSHHHHH
T ss_pred ECCEEecCcEEECCCCCCChHHHHHHHHhCCCEEEecCCCCHH---------HHHHHHHHHhcCCeEEEeC-CCCHHHHH
Confidence 3568899999999999999999987666777899888765421 122221 122355889995 77777664
Q ss_pred HHHHHHHHCC--CCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHH
Q 017176 81 KATELANAYN--YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 158 (376)
Q Consensus 81 ~aa~~~~~~G--~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i 158 (376)
.++.+.++| ++.|++|++. | ++....++++++++.++.|+.+|-. .. +.++
T Consensus 110 -~a~~~~~~g~~~~~i~i~~~~-----------G-----~~~~~~~~i~~lr~~~~~~~vi~G~--v~---s~e~----- 162 (336)
T 1ypf_A 110 -FVQQLAAEHLTPEYITIDIAH-----------G-----HSNAVINMIQHIKKHLPESFVIAGN--VG---TPEA----- 162 (336)
T ss_dssp -HHHHHHHTTCCCSEEEEECSS-----------C-----CSHHHHHHHHHHHHHCTTSEEEEEE--EC---SHHH-----
T ss_pred -HHHHHHhcCCCCCEEEEECCC-----------C-----CcHHHHHHHHHHHHhCCCCEEEECC--cC---CHHH-----
Confidence 466677888 9999998731 2 5678889999999988544444421 22 2222
Q ss_pred HHHhhcCCccEEEE--ccCcccc----CCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCe
Q 017176 159 YKVSSLSPTRHFII--HSRKALL----NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH 232 (376)
Q Consensus 159 ~~~~e~~Gvd~I~v--h~r~~~~----~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~ 232 (376)
++.++++|+|+|++ |+++... .+.+ .+...++.+.++++.. ++|||++|||.+++|+.+++..|||+
T Consensus 163 A~~a~~aGad~Ivvs~hgG~~~~~~~~~~~g------~~g~~~~~l~~v~~~~-~ipVIa~GGI~~g~Dv~kalalGAda 235 (336)
T 1ypf_A 163 VRELENAGADATKVGIGPGKVCITKIKTGFG------TGGWQLAALRWCAKAA-SKPIIADGGIRTNGDVAKSIRFGATM 235 (336)
T ss_dssp HHHHHHHTCSEEEECSSCSTTCHHHHHHSCS------STTCHHHHHHHHHHTC-SSCEEEESCCCSTHHHHHHHHTTCSE
T ss_pred HHHHHHcCCCEEEEecCCCceeecccccCcC------CchhHHHHHHHHHHHc-CCcEEEeCCCCCHHHHHHHHHcCCCE
Confidence 23455799999999 6654311 1111 1111367888888765 99999999999999999999999999
Q ss_pred eEEchHHhhCCc
Q 017176 233 VMVGRAAYQNPW 244 (376)
Q Consensus 233 VmiGRa~l~~P~ 244 (376)
||+||+++....
T Consensus 236 V~iGr~~l~t~E 247 (336)
T 1ypf_A 236 VMIGSLFAGHEE 247 (336)
T ss_dssp EEESGGGTTCTT
T ss_pred EEeChhhhcccc
Confidence 999999996544
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.7e-18 Score=164.85 Aligned_cols=252 Identities=13% Similarity=0.169 Sum_probs=165.6
Q ss_pred CeecCCcEEEccCCCC----C--hHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCC-CH
Q 017176 4 RQYLPPWFSVAPMMDW----T--DNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGS-NL 76 (376)
Q Consensus 4 ~~~l~nri~lAPM~~~----t--d~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~-~~ 76 (376)
|.+++-|+++||++.. . +....+.|.++| .-++.+-+.+ ...+...... .+.|..+||+-. |.
T Consensus 65 G~~~~~P~~iaP~g~~~l~~~~ge~~~araa~~~g-i~~~lSt~ss--------~s~e~v~~~~-~~~~~wfQlY~~~d~ 134 (352)
T 3sgz_A 65 GQEISAPICISPTAFHSIAWPDGEKSTARAAQEAN-ICYVISSYAS--------YSLEDIVAAA-PEGFRWFQLYMKSDW 134 (352)
T ss_dssp TEEESSSEEECCCSCGGGTCTTHHHHHHHHHHHHT-CEEEECTTCS--------SCHHHHHHHS-TTCEEEEECCCCSCH
T ss_pred CcccCCcceechHHHHHhcCccHHHHHHHHHHHcC-CCeEeCCCCC--------CCHHHHHHhc-cCccceeccccCCCH
Confidence 5678889999999763 2 344455566665 4333322211 1123332222 346889999854 66
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCcccc----CCC----------Cc--------ccc---ccCCHHHHHHHHHHHhc
Q 017176 77 DNLAKATELANAYNYDEINLNCGCPSPKVA----GHG----------CF--------GVS---LMLDPKFVGEAMSVIAA 131 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~----r~g----------~y--------G~~---l~~~~~~~~eiv~~v~~ 131 (376)
+...+..++++++||..|-+....|..-.. |.+ .+ ++. -.-++.+..+.++.+++
T Consensus 135 ~~~~~l~~ra~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~lr~ 214 (352)
T 3sgz_A 135 DFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILKAALRALKEEKPTQSVPVLFPKASFCWNDLSLLQS 214 (352)
T ss_dssp HHHHHHHHHHHHTTCCCEEEECSCSSCCCCHHHHHHHHHSCHHHHTTCC---------------CCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCCCCcchhhhhcCCCCCcccchhhhcccccccccchhhhhccCCCCCHHHHHHHHH
Confidence 777778899999999999999888763110 000 00 011 12356777889999999
Q ss_pred ccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEcc--CccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CC
Q 017176 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS--RKALLNGISPAENRTIPPLKYEYYYALLRDFP-DL 208 (376)
Q Consensus 132 ~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~--r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~i 208 (376)
.+++||.+|.... .++ ++.++++|+|+|+|++ +++... .+..++.+.++++.+. ++
T Consensus 215 ~~~~PvivK~v~~------~e~-----A~~a~~~GaD~I~vsn~GG~~~d~----------~~~~~~~L~~i~~av~~~i 273 (352)
T 3sgz_A 215 ITRLPIILKGILT------KED-----AELAMKHNVQGIVVSNHGGRQLDE----------VSASIDALREVVAAVKGKI 273 (352)
T ss_dssp HCCSCEEEEEECS------HHH-----HHHHHHTTCSEEEECCGGGTSSCS----------SCCHHHHHHHHHHHHTTSS
T ss_pred hcCCCEEEEecCc------HHH-----HHHHHHcCCCEEEEeCCCCCccCC----------CccHHHHHHHHHHHhCCCC
Confidence 9999999997642 222 2345689999999954 433211 1234778888776542 79
Q ss_pred eEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchH
Q 017176 209 TFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPH 288 (376)
Q Consensus 209 pVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (376)
|||++|||.+++|+.+++..|||+|||||+++..+.. .|. ....++++.+.+..+..+...|.. .
T Consensus 274 pVia~GGI~~g~Dv~kaLalGA~aV~iGr~~l~~l~~---------~G~----~gv~~~l~~l~~el~~~m~~~G~~--~ 338 (352)
T 3sgz_A 274 EVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLAC---------KGE----DGVKEVLDILTAELHRCMTLSGCQ--S 338 (352)
T ss_dssp EEEEESSCCSHHHHHHHHHTTCSEEEESHHHHHHHHH---------HHH----HHHHHHHHHHHHHHHHHHHHHTCS--B
T ss_pred eEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHHh---------cCc----HHHHHHHHHHHHHHHHHHHHhCCC--c
Confidence 9999999999999999999999999999987644331 121 122344555555555666677752 4
Q ss_pred HHHHHHHHHHhhc
Q 017176 289 VRDVMKPLLHFFH 301 (376)
Q Consensus 289 ~~~~~k~~~~y~~ 301 (376)
+..+++++.||.+
T Consensus 339 i~el~~~~~~y~k 351 (352)
T 3sgz_A 339 VAEISPDLIQFSR 351 (352)
T ss_dssp GGGCCGGGBSSCC
T ss_pred HHHHhhhcchhcc
Confidence 6788899999865
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.6e-18 Score=163.91 Aligned_cols=217 Identities=12% Similarity=0.040 Sum_probs=128.4
Q ss_pred CCCeecCCcEEEccCCCCChHH------HHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCC
Q 017176 2 VARQYLPPWFSVAPMMDWTDNH------YRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~------~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~ 75 (376)
+++.+++.|+++|||++.++.+ ++..|++.| .++.+.++...-.- .........+.. .+.+++.+|....
T Consensus 80 i~g~~l~~Pi~iapMtgg~~~~~~in~~lA~~a~~~G-~~~~vGs~~~~le~--~~~~~~~v~r~~-P~~~~ianig~~~ 155 (365)
T 3sr7_A 80 FAGQDFDFPFYINAMTGGSQKGKEVNEKLAQVADTCG-LLFVTGSYSTALKN--PDDTSYQVKKSR-PHLLLATNIGLDK 155 (365)
T ss_dssp ETTEEESSSEEEECC----CCCHHHHHHHHHHHHHHT-CCEEC--------------------------CCEEEEEETTS
T ss_pred ECCEEccCceEeccccCCCcchhHHHHHHHHHHHHcC-CCeecccccccccC--ccccceEehhhC-CCCcEEEEeCCCC
Confidence 4678999999999999987644 888999997 77877777642211 000111112222 3678889997654
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHH
Q 017176 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLC 155 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~ 155 (376)
+. .++.+.++..|+|++.||....+..+... | ..+.+-..+.|+++++.+++||.||. .|+.. +.++
T Consensus 156 ~~--e~~~~~ve~~~adal~ihln~~qe~~~p~---G---d~~~~~~~~~I~~l~~~~~~PVivK~-vg~g~--s~e~-- 222 (365)
T 3sr7_A 156 PY--QAGLQAVRDLQPLFLQVHINLMQELLMPE---G---EREFRSWKKHLSDYAKKLQLPFILKE-VGFGM--DVKT-- 222 (365)
T ss_dssp CH--HHHHHHHHHHCCSCEEEEECHHHHHTSSS---S---CCCCHHHHHHHHHHHHHCCSCEEEEE-CSSCC--CHHH--
T ss_pred CH--HHHHHHHHhcCCCEEEEeccccccccCCC---C---CCcHHHHHHHHHHHHHhhCCCEEEEE-CCCCC--CHHH--
Confidence 32 25566667778999998876433222111 2 13344577899999999999999994 45442 2222
Q ss_pred HHHHHHhhcCCccEEEEccC--cccc-----CC---CCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHH
Q 017176 156 DFIYKVSSLSPTRHFIIHSR--KALL-----NG---ISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAA 225 (376)
Q Consensus 156 ~~i~~~~e~~Gvd~I~vh~r--~~~~-----~g---~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~ 225 (376)
++.+.++|+|+|+|+++ +... +. ....+| .++ ....+.++.....++|||++|||+++.|+.++
T Consensus 223 ---A~~l~~aGad~I~V~g~GGt~~a~ie~~r~~~~~~~~~~-g~p--t~~~L~~v~~~~~~ipvia~GGI~~g~Dv~Ka 296 (365)
T 3sr7_A 223 ---IQTAIDLGVKTVDISGRGGTSFAYIENRRGGNRSYLNQW-GQT--TAQVLLNAQPLMDKVEILASGGIRHPLDIIKA 296 (365)
T ss_dssp ---HHHHHHHTCCEEECCCBC--------------CGGGTTC-SCB--HHHHHHHHGGGTTTSEEEECSSCCSHHHHHHH
T ss_pred ---HHHHHHcCCCEEEEeCCCCcccchhhccccccccccccc-ccc--HHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHH
Confidence 23345799999999764 3210 00 000011 111 23455544332247999999999999999999
Q ss_pred HHcCcCeeEEchHHhh
Q 017176 226 LRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 226 l~~Gad~VmiGRa~l~ 241 (376)
+..|||+||+||++|.
T Consensus 297 LalGAdaV~ig~~~l~ 312 (365)
T 3sr7_A 297 LVLGAKAVGLSRTMLE 312 (365)
T ss_dssp HHHTCSEEEESHHHHH
T ss_pred HHcCCCEEEECHHHHH
Confidence 9999999999997654
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-17 Score=164.88 Aligned_cols=205 Identities=12% Similarity=0.091 Sum_probs=137.5
Q ss_pred CeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhh-------------------hc-----
Q 017176 4 RQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRF-------------------LA----- 59 (376)
Q Consensus 4 ~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~-------------------~~----- 59 (376)
++.+++||++|||+++++.+++..+.+.||.|++. .+.+.+.+........++ +.
T Consensus 38 g~~l~~Pii~Apm~~~~~~ela~a~a~aGglg~i~-~~~s~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~ 116 (404)
T 1eep_A 38 NISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIH-KNMSIEAQRKEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHL 116 (404)
T ss_dssp SCEESSSEEECCCTTTCSHHHHHHHHHHTSEEEEC-SSSCHHHHHHHHHHHHTCC-------------------------
T ss_pred CcccCCCEEeCCCCCCCCHHHHHHHHHCCCEEEEC-CCCCHHHHHHHHHHHHhhccCCCceeccccccccccccccCCCC
Confidence 78899999999999999999999888889888775 344444332211111000 00
Q ss_pred -------------cCC-------CCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCH
Q 017176 60 -------------FSP-------EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDP 119 (376)
Q Consensus 60 -------------~~~-------~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~ 119 (376)
..+ ...++++++... ++ +.+.++.+.++|+|.|+||+++ | ++
T Consensus 117 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~-~~-~~~~a~~~~~~G~d~i~i~~~~-----------g-----~~ 178 (404)
T 1eep_A 117 EKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSID-ID-TIERVEELVKAHVDILVIDSAH-----------G-----HS 178 (404)
T ss_dssp -------------CCTTCCBCTTSCBCCEEEECSC-TT-HHHHHHHHHHTTCSEEEECCSC-----------C-----SS
T ss_pred CHHHHHHHHHHhhhcchhhhhcccCceEEEEeCCC-hh-HHHHHHHHHHCCCCEEEEeCCC-----------C-----Ch
Confidence 001 012467777653 22 4555667778999999998643 1 35
Q ss_pred HHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccC------ccccCCCCCCCCCCCCc
Q 017176 120 KFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR------KALLNGISPAENRTIPP 192 (376)
Q Consensus 120 ~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r------~~~~~g~~~~~~~~~~~ 192 (376)
+.+.++++++++.+ ++||.++.- .+.++ ++.++++|+|+|.|..+ +....+.+. +
T Consensus 179 ~~~~e~i~~ir~~~~~~pviv~~v------~~~~~-----a~~a~~~Gad~I~vg~~~G~~~~~~~~~~~g~------p- 240 (404)
T 1eep_A 179 TRIIELIKKIKTKYPNLDLIAGNI------VTKEA-----ALDLISVGADCLKVGIGPGSICTTRIVAGVGV------P- 240 (404)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEE------CSHHH-----HHHHHTTTCSEEEECSSCSTTSHHHHHHCCCC------C-
T ss_pred HHHHHHHHHHHHHCCCCeEEEcCC------CcHHH-----HHHHHhcCCCEEEECCCCCcCcCccccCCCCc------c-
Confidence 78889999999988 789988421 12222 23345799999999211 111111111 1
Q ss_pred ccHHHHHHHHh--hCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchh
Q 017176 193 LKYEYYYALLR--DFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 246 (376)
Q Consensus 193 ~~~~~v~~~~~--~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf 246 (376)
.++.+..+.+ ...++|||++|||.+++|+.++++.|||+|++||+++.+|+..
T Consensus 241 -~~~~l~~v~~~~~~~~ipVia~GGI~~~~d~~~ala~GAd~V~iG~~~l~~~e~~ 295 (404)
T 1eep_A 241 -QITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESP 295 (404)
T ss_dssp -HHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEECHHHHTBTTSS
T ss_pred -hHHHHHHHHHHHhhcCceEEEECCCCCHHHHHHHHHcCCCHHhhCHHHhcCCCCC
Confidence 2444444443 1238999999999999999999999999999999999999874
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-16 Score=154.38 Aligned_cols=198 Identities=14% Similarity=0.105 Sum_probs=135.8
Q ss_pred CCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHHH
Q 017176 3 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKA 82 (376)
Q Consensus 3 ~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~a 82 (376)
..+.++.||+.|||.++|+..++..+.+.||.|++.. ..+.+..... ..+.. .....|+++++..+. .+.
T Consensus 40 ~~~~l~~Pii~apM~~vt~~~lA~avA~~GGlgii~~-~~s~e~~~~~---I~~vk--~~~~~pvga~ig~~~----~e~ 109 (361)
T 3khj_A 40 KNVSLKIPLISSAMDTVTEHLMAVGMARLGGIGIIHK-NMDMESQVNE---VLKVK--NSGGLRVGAAIGVNE----IER 109 (361)
T ss_dssp SSCEESSSEEECSSTTTCSHHHHHHHHHTTCEEEECS-SSCHHHHHHH---HHHHH--HTTCCCCEEEECTTC----HHH
T ss_pred cccccCCCEEeecCCCCCcHHHHHHHHHcCCCeEEec-CCCHHHHHHH---HHHHH--hccCceEEEEeCCCH----HHH
Confidence 3578889999999999999999987777788887753 2222211111 11111 124578999997655 556
Q ss_pred HHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHh
Q 017176 83 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVS 162 (376)
Q Consensus 83 a~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~ 162 (376)
++.+.++|+|.|.||.+. | +++.+.+.++.+++..++||.++.- .+.++. +.+
T Consensus 110 a~~l~eaGad~I~ld~a~-----------G-----~~~~~~~~i~~i~~~~~~~Vivg~v------~t~e~A-----~~l 162 (361)
T 3khj_A 110 AKLLVEAGVDVIVLDSAH-----------G-----HSLNIIRTLKEIKSKMNIDVIVGNV------VTEEAT-----KEL 162 (361)
T ss_dssp HHHHHHTTCSEEEECCSC-----------C-----SBHHHHHHHHHHHHHCCCEEEEEEE------CSHHHH-----HHH
T ss_pred HHHHHHcCcCeEEEeCCC-----------C-----CcHHHHHHHHHHHHhcCCcEEEccC------CCHHHH-----HHH
Confidence 677788999999998542 2 3467788899888877889988532 223322 234
Q ss_pred hcCCccEEEEccCc------cccCCCCCCCCCCCCcccHHHHHHH---HhhCCCCeEEEecCCCCHHHHHHHHHcCcCee
Q 017176 163 SLSPTRHFIIHSRK------ALLNGISPAENRTIPPLKYEYYYAL---LRDFPDLTFTLNGGINTVDEVNAALRKGAHHV 233 (376)
Q Consensus 163 e~~Gvd~I~vh~r~------~~~~g~~~~~~~~~~~~~~~~v~~~---~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~V 233 (376)
.++|+|+|.|..+. ....|.. .+ .+..+.++ .+. .++|||++|||.+++|+.++++.|||+|
T Consensus 163 ~~aGaD~I~VG~~~Gs~~~tr~~~g~g------~p--~~~~i~~v~~~~~~-~~iPVIA~GGI~~~~di~kala~GAd~V 233 (361)
T 3khj_A 163 IENGADGIKVGIGPGSICTTRIVAGVG------VP--QITAIEKCSSVASK-FGIPIIADGGIRYSGDIGKALAVGASSV 233 (361)
T ss_dssp HHTTCSEEEECSSCCTTCCHHHHTCBC------CC--HHHHHHHHHHHHHH-HTCCEEEESCCCSHHHHHHHHHHTCSEE
T ss_pred HHcCcCEEEEecCCCcCCCcccccCCC------CC--cHHHHHHHHHHHhh-cCCeEEEECCCCCHHHHHHHHHcCCCEE
Confidence 57999999994221 1111110 11 24445444 333 3799999999999999999999999999
Q ss_pred EEchHHhhCCchh
Q 017176 234 MVGRAAYQNPWYT 246 (376)
Q Consensus 234 miGRa~l~~P~lf 246 (376)
|+|++++..+...
T Consensus 234 ~vGs~~~~t~Esp 246 (361)
T 3khj_A 234 MIGSILAGTEESP 246 (361)
T ss_dssp EESTTTTTBTTSS
T ss_pred EEChhhhcCCcCC
Confidence 9999999988764
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-16 Score=152.40 Aligned_cols=195 Identities=15% Similarity=0.139 Sum_probs=133.0
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHH
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAK 81 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~ 81 (376)
+.++.++.||++|||.++++..++..+.+.||.|++- .+.+.+.+....+ .....+...+ + .++...+
T Consensus 36 l~g~~l~~Pii~ApM~~vte~~lA~A~a~~Gg~gvi~-~~~s~ee~~~~i~---------~~~~~~~~~~-g-~~~~~~e 103 (361)
T 3r2g_A 36 LGKLTLNLPVISANMDTITESNMANFMHSKGAMGALH-RFMTIEENIQEFK---------KCKGPVFVSV-G-CTENELQ 103 (361)
T ss_dssp TSSCEESSCEEECCSTTTCSHHHHHHHHHTTCEEBCC-SCSCHHHHHHHHH---------TCCSCCBEEE-C-SSHHHHH
T ss_pred ECCEEcCCCEEECCCCCchHHHHHHHHHHcCCCEEEe-CCCCHHHHHHHHh---------hcceEEEEEc-C-CCHHHHH
Confidence 4678899999999999999999999999999776553 3333332221111 1112233333 2 3355667
Q ss_pred HHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHH
Q 017176 82 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYK 160 (376)
Q Consensus 82 aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~ 160 (376)
.++++.++|+|.|.|+..+.. ++.+.++++.+++.. ++||.+|-- .+.++ ++
T Consensus 104 ~~~~a~~aGvdvI~id~a~G~----------------~~~~~e~I~~ir~~~~~~~Vi~G~V------~T~e~-----A~ 156 (361)
T 3r2g_A 104 RAEALRDAGADFFCVDVAHAH----------------AKYVGKTLKSLRQLLGSRCIMAGNV------ATYAG-----AD 156 (361)
T ss_dssp HHHHHHHTTCCEEEEECSCCS----------------SHHHHHHHHHHHHHHTTCEEEEEEE------CSHHH-----HH
T ss_pred HHHHHHHcCCCEEEEeCCCCC----------------cHhHHHHHHHHHHhcCCCeEEEcCc------CCHHH-----HH
Confidence 788899999999999864321 245678899999876 789988721 22333 23
Q ss_pred HhhcCCccEEEE--ccCccc----cCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeE
Q 017176 161 VSSLSPTRHFII--HSRKAL----LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM 234 (376)
Q Consensus 161 ~~e~~Gvd~I~v--h~r~~~----~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vm 234 (376)
.+.++|+|+|.| |++... ..|. ..+ .+..+.++++.. . |||++|||.++.|+.++++.|||+||
T Consensus 157 ~a~~aGaD~I~Vg~g~G~~~~tr~~~g~------g~p--~l~aI~~~~~~~-~-PVIAdGGI~~~~di~kALa~GAd~V~ 226 (361)
T 3r2g_A 157 YLASCGADIIKAGIGGGSVCSTRIKTGF------GVP--MLTCIQDCSRAD-R-SIVADGGIKTSGDIVKALAFGADFVM 226 (361)
T ss_dssp HHHHTTCSEEEECCSSSSCHHHHHHHCC------CCC--HHHHHHHHTTSS-S-EEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred HHHHcCCCEEEEcCCCCcCccccccCCc------cHH--HHHHHHHHHHhC-C-CEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 345799999998 332210 0111 111 356666665543 3 99999999999999999999999999
Q ss_pred EchHHhhCCch
Q 017176 235 VGRAAYQNPWY 245 (376)
Q Consensus 235 iGRa~l~~P~l 245 (376)
+||+++.....
T Consensus 227 iGr~f~~t~Es 237 (361)
T 3r2g_A 227 IGGMLAGSAPT 237 (361)
T ss_dssp ESGGGTTBTTS
T ss_pred EChHHhCCccC
Confidence 99999988654
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.8e-16 Score=142.09 Aligned_cols=183 Identities=11% Similarity=0.088 Sum_probs=122.3
Q ss_pred EEccCCCCChHHHHHHHH---HhCCCcE--EEecceee-cccccccchhhhhhccCCCCCCEEEEecCCCHHHHHHHHHH
Q 017176 12 SVAPMMDWTDNHYRTLAR---LISKHAW--LYTEMLAA-ETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATEL 85 (376)
Q Consensus 12 ~lAPM~~~td~~~r~~~~---~~Gg~gl--~~te~v~~-~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~aa~~ 85 (376)
.|.|+ .|+.+||.+|+ ++| ++. ++.+|+.. ...+. . .++... .+.|++.|+.++.+ ..++.
T Consensus 12 ~l~p~--~t~~~i~~l~~~a~~~g-~~~v~v~~~~v~~~~~~l~-~---v~v~~v--~~~P~g~~~~~~k~----~~~~~ 78 (225)
T 1mzh_A 12 ALKPH--LSEKEIEEFVLKSEELG-IYAVCVNPYHVKLASSIAK-K---VKVCCV--IGFPLGLNKTSVKV----KEAVE 78 (225)
T ss_dssp ECCTT--CCHHHHHHHHHHHHHTT-CSEEEECGGGHHHHHHHCS-S---SEEEEE--ESTTTCCSCHHHHH----HHHHH
T ss_pred ccCCC--CCHHHHHHHHHHHHHhC-CeEEEECHHHHHHHHHHhc-C---CceeeE--ecCCCCccchhhhH----HHHHH
Confidence 46786 68999999997 565 666 44566654 22222 1 111111 13456656544433 33467
Q ss_pred HHHCCCCEEE--ecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe---cCCCCCCccHHHHHHHHHH
Q 017176 86 ANAYNYDEIN--LNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC---RIGVDDHDSYNQLCDFIYK 160 (376)
Q Consensus 86 ~~~~G~d~Ie--iN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi---R~g~~~~~~~~~~~~~i~~ 160 (376)
+.+.|+|+|| +|+|| .+.+. .+.+.+.++++++.++ |+++|+ +.++++ + +.. .+++
T Consensus 79 A~~~Gad~Id~viN~g~-----~~~~~--------~~~~~~~i~~v~~a~~-pv~vKvi~e~~~l~~-~---~~~-~~a~ 139 (225)
T 1mzh_A 79 AVRDGAQELDIVWNLSA-----FKSEK--------YDFVVEELKEIFRETP-SAVHKVIVETPYLNE-E---EIK-KAVE 139 (225)
T ss_dssp HHHTTCSEEEEECCHHH-----HHTTC--------HHHHHHHHHHHHHTCT-TSEEEEECCGGGCCH-H---HHH-HHHH
T ss_pred HHHcCCCEEEEEecHHH-----HhcCC--------hHHHHHHHHHHHHHhc-CceEEEEEeCCCCCH-H---HHH-HHHH
Confidence 7789999999 79988 22333 3567777999999888 999999 766654 2 222 2456
Q ss_pred HhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 161 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 161 ~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
+++++|+|+|... +....| + ..++.++.+++.. .++||+++|||+|++|+.+++++|||.|.++++
T Consensus 140 ~a~eaGad~I~ts--tg~~~g--g--------a~~~~i~~v~~~v~~~ipVia~GGI~t~~da~~~l~aGA~~iG~s~~ 206 (225)
T 1mzh_A 140 ICIEAGADFIKTS--TGFAPR--G--------TTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAGADRIGTSSG 206 (225)
T ss_dssp HHHHHTCSEEECC--CSCSSS--C--------CCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEESCH
T ss_pred HHHHhCCCEEEEC--CCCCCC--C--------CCHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCchHHHHccH
Confidence 6778999999433 221111 1 2377777776653 279999999999999999999999998877766
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=99.58 E-value=8.6e-15 Score=143.83 Aligned_cols=210 Identities=12% Similarity=0.029 Sum_probs=129.9
Q ss_pred CCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhh------------------------
Q 017176 3 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFL------------------------ 58 (376)
Q Consensus 3 ~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~------------------------ 58 (376)
..+.++.||+.|||.++|+..+...+.+.||.|.+-. +.+++.+.....+..++.
T Consensus 37 ~~l~l~~PIi~a~M~~Vs~~~lA~Ava~aGGlGvi~~-~~~~e~~~~~i~~vk~~~~g~~~~P~~~~~nL~~~~~~~~~~ 115 (400)
T 3ffs_A 37 KNVSLKIPLISSAMDTVTEHLMAVGMARLGGIGIIHK-NMDMESQVNEVLKVKNWISNLEKNESTPDQNLDKESTDGKDT 115 (400)
T ss_dssp SSCEESSSEEECSCTTTCSSHHHHHHHTTTCEEEECS-SSCHHHHHHHHHHHHCCC------------------------
T ss_pred cccCCCCCEEeCCCCCcCcHHHHHHHHHCCCEEEeCC-CCCHHHHHHHHHHHHhhccCcccCCCCccccccCCCCCHHHH
Confidence 4577889999999999999999999889999988753 444332211111110000
Q ss_pred ------ccC-----CCCC--CEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHH
Q 017176 59 ------AFS-----PEQH--PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125 (376)
Q Consensus 59 ------~~~-----~~~~--p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~ei 125 (376)
... ++.. .+.+-+...+ .+.++.+.++|+|.|.|+.+. | +++.+.++
T Consensus 116 ~~~~~~~~~p~~~~d~~g~l~v~~~v~~~~----~e~~~~lveaGvdvIvldta~-----------G-----~~~~~~e~ 175 (400)
T 3ffs_A 116 KSNNNIDAYSNENLDNKGRLRVGAAIGVNE----IERAKLLVEAGVDVIVLDSAH-----------G-----HSLNIIRT 175 (400)
T ss_dssp -------CCTTCCBCTTSSBCCEEEECCC-----CHHHHHHHHHTCSEEEECCSC-----------C-----SBHHHHHH
T ss_pred HHHHHhhhCcchhhccccceeEEeecCCCH----HHHHHHHHHcCCCEEEEeCCC-----------C-----CcccHHHH
Confidence 000 0011 1112121111 455667777899999886421 2 34567788
Q ss_pred HHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhh-
Q 017176 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD- 204 (376)
Q Consensus 126 v~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~- 204 (376)
++.+++..++||.++.- .+.++. +.++++|+|+|.+..... ..+.. ..........+..+.++.+.
T Consensus 176 I~~ik~~~~i~Vi~g~V------~t~e~A-----~~a~~aGAD~I~vG~g~G-s~~~t-r~~~g~g~p~~~al~~v~~~~ 242 (400)
T 3ffs_A 176 LKEIKSKMNIDVIVGNV------VTEEAT-----KELIENGADGIKVGIGPG-SICTT-RIVAGVGVPQITAIEKCSSVA 242 (400)
T ss_dssp HHHHHTTCCCEEEEEEE------CSHHHH-----HHHHHTTCSEEEECC-----------CCSCBCCCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCeEEEeec------CCHHHH-----HHHHHcCCCEEEEeCCCC-cCccc-ccccccchhHHHHHHHHHHHH
Confidence 89998887889887522 223332 334579999999942110 00000 00000111135666666543
Q ss_pred -CCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchh
Q 017176 205 -FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 246 (376)
Q Consensus 205 -~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf 246 (376)
..++|||++|||.+++|+.++++.|||+||+|++++..+.-.
T Consensus 243 ~~~~IPVIA~GGI~~~~di~kalalGAd~V~vGt~f~~t~Es~ 285 (400)
T 3ffs_A 243 SKFGIPIIADGGIRYSGDIGKALAVGASSVMIGSILAGTEESP 285 (400)
T ss_dssp TTTTCCEEEESCCCSHHHHHHHHTTTCSEEEECGGGTTBTTSS
T ss_pred HhcCCCEEecCCCCCHHHHHHHHHcCCCEEEEChHHhcCCCCC
Confidence 248999999999999999999999999999999999987653
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.58 E-value=9.3e-15 Score=144.31 Aligned_cols=213 Identities=11% Similarity=0.038 Sum_probs=133.2
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecc---------cccc---------------------c
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAET---------IIYQ---------------------Q 51 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~---------~~~~---------------------~ 51 (376)
+.++.+++|+++|||+++++..++..+.+.|+.+++.|||..... +... +
T Consensus 61 l~g~~l~~Pii~Apm~g~~~~~~a~a~a~~G~~gvl~~~~~~~~~~~~~~~~eeia~~~~~~d~~~g~~~~~q~~~~~~d 140 (393)
T 2qr6_A 61 IDAYKFDLPFMNHPSDALASPEFVIEMGKQGGLGVINAEGLWGRHADLDEAIAKVIAAYEEGDQAAATRTLQELHAAPLD 140 (393)
T ss_dssp ETTEEESSSEEECCCTTTCCHHHHHHHHHTTSBCEEETTSSTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred EcccccCCCeEeCCCCCcccHHHHHHHHHcCCcEEEEecceecccCCchhHHHHHHHHHHhcCCCccchhhhhcccccCC
Confidence 357889999999999999999999999999999999997632210 0000 0
Q ss_pred c-hhhhhh-ccCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHH
Q 017176 52 G-NLDRFL-AFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI 129 (376)
Q Consensus 52 ~-~~~~~~-~~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v 129 (376)
+ ....++ ...+.+.++++.+.+.+.. +.++.+.++|+|.+.+|. .|.. ..|++ ++...+-+..+
T Consensus 141 ~~~~~~~i~~~~~~g~~v~~~v~~~~~~---e~a~~~~~agad~i~i~~-~~~~-----~~~~~-----~~~~~~~i~~l 206 (393)
T 2qr6_A 141 TELLSERIAQVRDSGEIVAVRVSPQNVR---EIAPIVIKAGADLLVIQG-TLIS-----AEHVN-----TGGEALNLKEF 206 (393)
T ss_dssp HHHHHHHHHHHHHTTSCCEEEECTTTHH---HHHHHHHHTTCSEEEEEC-SSCC-----SSCCC-----C-----CHHHH
T ss_pred HHHHHHHHHHHhhcCCeEEEEeCCccHH---HHHHHHHHCCCCEEEEeC-Cccc-----cccCC-----CcccHHHHHHH
Confidence 0 000111 1122366788888765543 344556678999999883 3321 11222 11112224566
Q ss_pred hcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhh-----
Q 017176 130 AANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD----- 204 (376)
Q Consensus 130 ~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~----- 204 (376)
++.+++||.+| |.. +.++. +.+.++|+|.|.| +... ..+.. . ....+..++.+.++.+.
T Consensus 207 ~~~~~~pvi~g---gi~---t~e~a-----~~~~~~Gad~i~v-g~Gg-~~~~~-~--~~~g~~~~~~l~~v~~~~~~~~ 270 (393)
T 2qr6_A 207 IGSLDVPVIAG---GVN---DYTTA-----LHMMRTGAVGIIV-GGGE-NTNSL-A--LGMEVSMATAIADVAAARRDYL 270 (393)
T ss_dssp HHHCSSCEEEE---CCC---SHHHH-----HHHHTTTCSEEEE-SCCS-CCHHH-H--TSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCEEEC---CcC---CHHHH-----HHHHHcCCCEEEE-CCCc-ccccc-c--CCCCCChHHHHHHHHHHHHHhH
Confidence 66678999996 322 23332 2334799999999 3311 01000 0 00011235666555543
Q ss_pred --CC--CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017176 205 --FP--DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 205 --~~--~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
+. ++|||++|||.+++|+.+++..|||+||+||+++..+.
T Consensus 271 ~~~~~~~ipvia~GGI~~~~dv~kalalGA~~V~iG~~~l~~~e 314 (393)
T 2qr6_A 271 DETGGRYVHIIADGSIENSGDVVKAIACGADAVVLGSPLARAEE 314 (393)
T ss_dssp HHHTSCCCEEEECSSCCSHHHHHHHHHHTCSEEEECGGGGGSTT
T ss_pred hhcCCcceEEEEECCCCCHHHHHHHHHcCCCEEEECHHHHcCCC
Confidence 32 29999999999999999999999999999999999886
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=99.58 E-value=4.7e-15 Score=144.40 Aligned_cols=205 Identities=10% Similarity=-0.001 Sum_probs=128.3
Q ss_pred CeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEec-CCCHHHHHHH
Q 017176 4 RQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG-GSNLDNLAKA 82 (376)
Q Consensus 4 ~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~-g~~~~~~~~a 82 (376)
.+.++.||+.|||.++|+..+...+.+.||.|++-..+ +.+... ..+..+... .++.+++. +.++ ++.+.
T Consensus 42 ~~~l~~Pii~apM~~vs~~~lA~avA~aGGlg~i~~~~-s~e~~~------~~i~~vk~~-~~l~vga~vg~~~-~~~~~ 112 (366)
T 4fo4_A 42 NIALNIPMVSASMDTVTEARLAIALAQEGGIGFIHKNM-SIEQQA------AQVHQVKIS-GGLRVGAAVGAAP-GNEER 112 (366)
T ss_dssp TEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECSSS-CHHHHH------HHHHHHHTT-TSCCCEEECCSCT-TCHHH
T ss_pred ccccCCCEEeCCCCCCChHHHHHHHHHcCCceEeecCC-CHHHHH------HHHHHHHhc-CceeEEEEeccCh-hHHHH
Confidence 56788999999999999999998888889887764321 222111 111111111 23333332 2222 34566
Q ss_pred HHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHH
Q 017176 83 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKV 161 (376)
Q Consensus 83 a~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~ 161 (376)
++.+.++|+|.|.||... | +++.+.+.++.+++.. ++||.+..- .+.++. +.
T Consensus 113 ~~~lieaGvd~I~idta~-----------G-----~~~~~~~~I~~ik~~~p~v~Vi~G~v------~t~e~A-----~~ 165 (366)
T 4fo4_A 113 VKALVEAGVDVLLIDSSH-----------G-----HSEGVLQRIRETRAAYPHLEIIGGNV------ATAEGA-----RA 165 (366)
T ss_dssp HHHHHHTTCSEEEEECSC-----------T-----TSHHHHHHHHHHHHHCTTCEEEEEEE------CSHHHH-----HH
T ss_pred HHHHHhCCCCEEEEeCCC-----------C-----CCHHHHHHHHHHHHhcCCCceEeeee------CCHHHH-----HH
Confidence 777888999999998421 2 3456778888888876 778776421 223332 23
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhh--CCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHH
Q 017176 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD--FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~--~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~ 239 (376)
++++|+|+|.+..+.....+.... .......+..+.++.+. ..++|||+.|||.++.|+.++++.|||+||+|+.+
T Consensus 166 a~~aGAD~I~vG~gpGs~~~tr~~--~g~g~p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vGs~f 243 (366)
T 4fo4_A 166 LIEAGVSAVKVGIGPGSICTTRIV--TGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVGSMF 243 (366)
T ss_dssp HHHHTCSEEEECSSCSTTBCHHHH--HCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred HHHcCCCEEEEecCCCCCCCcccc--cCcccchHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHh
Confidence 457899999992110000000000 00011125555555431 24899999999999999999999999999999999
Q ss_pred hhCCchh
Q 017176 240 YQNPWYT 246 (376)
Q Consensus 240 l~~P~lf 246 (376)
+..+.-.
T Consensus 244 ~~t~Esp 250 (366)
T 4fo4_A 244 AGTEEAP 250 (366)
T ss_dssp TTBTTSS
T ss_pred hcCCCCC
Confidence 9887753
|
| >2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.2e-14 Score=131.73 Aligned_cols=154 Identities=19% Similarity=0.273 Sum_probs=106.2
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCC------------
Q 017176 80 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD------------ 147 (376)
Q Consensus 80 ~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~------------ 147 (376)
.+.|+.++++|+++|.... |+++..+..+ |+++|++|+.+.+|.+ ++++||+.|+|+||.+
T Consensus 27 ~e~A~~ae~aGA~aI~~l~--~v~~d~~~~~-G~arm~~p~~i~~I~~----av~iPV~~K~rig~~~e~qilea~GaD~ 99 (330)
T 2yzr_A 27 VEQAQIAEEAGAVAVMALE--RVPADIRAAG-GVARMSDPALIEEIMD----AVSIPVMAKCRIGHTTEALVLEAIGVDM 99 (330)
T ss_dssp HHHHHHHHHHTCSEEEECS--SCHHHHC--C-CCCCCCCHHHHHHHHH----HCSSCEEEEEETTCHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHcCCCEEEecC--CccccccCCc-chhhcCCHHHHHHHHH----hcCCCeEEEEeecchHHHHHHHHcCCCE
Confidence 5578888899999995543 8888888877 9999999999888865 4679999999999831
Q ss_pred -----------C-----------------ccHHHHHHHHHHHhhcCCccEEEEcc--------------Cc---------
Q 017176 148 -----------H-----------------DSYNQLCDFIYKVSSLSPTRHFIIHS--------------RK--------- 176 (376)
Q Consensus 148 -----------~-----------------~~~~~~~~~i~~~~e~~Gvd~I~vh~--------------r~--------- 176 (376)
. .++.|.++ ++ +.|+++|.+|| |+
T Consensus 100 Id~s~~l~p~d~~~~i~k~~~~~~~~~~a~~lgea~r---~~--~~Ga~~i~t~ge~g~~~~ve~v~H~r~~~~~~~~~s 174 (330)
T 2yzr_A 100 IDESEVLTQADPFFHIYKKKFNVPFVCGARNLGEAVR---RI--WEGAAMIRTKGEAGTGNIVEAVRHMRLMNEAIAQLQ 174 (330)
T ss_dssp EEEETTSCCSCSSCCCCGGGCSSCEEEECSSHHHHHH---HH--HHTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHT
T ss_pred EehhccCCHHHHHHHhhhhhcccchhhccccHHHHHH---HH--hcCcceeeccCCCCcccchhHHHHHHHHHHHHHHhc
Confidence 0 02444332 22 57999999998 33
Q ss_pred ---c--ccCC--CCCCCC---------------CCC--C------------cccHHHHHHHHhhCCCCeE--EEecCCCC
Q 017176 177 ---A--LLNG--ISPAEN---------------RTI--P------------PLKYEYYYALLRDFPDLTF--TLNGGINT 218 (376)
Q Consensus 177 ---~--~~~g--~~~~~~---------------~~~--~------------~~~~~~v~~~~~~~~~ipV--i~nGgI~s 218 (376)
. .+.. ..++++ +.+ . ...++.+.++.+.. ++|| |++|||.|
T Consensus 175 ~~~~~El~~~A~~~gadyv~~~~~vt~~~G~~~r~Lg~G~Vf~T~TK~~~~~~~lell~~i~~~~-~IPVV~VAeGGI~T 253 (330)
T 2yzr_A 175 RMTDEEVYGVAKFYANRYAELAKTVREGMGLPATVLENEPIYEGFTLAEIIDGLYEVLLEVKKLG-RLPVVNFAAGGVAT 253 (330)
T ss_dssp TSCHHHHHHHHHHHHGGGGHHHHHHHHHTTSCSCCCTTSEEETTEEHHHHHHHHHHHHHHHHHHT-SCSSEEEECSCCCS
T ss_pred cCCHHHHHHHHHHcCCCEeecccchhhhccccccccccccccCCCcccCCCcchHHHHHHHHHhC-CCCeEEEEECCCCC
Confidence 0 0000 000110 000 0 11126677776654 7998 69999999
Q ss_pred HHHHHHHHHcCcCeeEEchHHh--hCCchh
Q 017176 219 VDEVNAALRKGAHHVMVGRAAY--QNPWYT 246 (376)
Q Consensus 219 ~~da~~~l~~Gad~VmiGRa~l--~~P~lf 246 (376)
++++.++++.|||+|+|||+++ .||...
T Consensus 254 peda~~~l~~GaDgV~VGsaI~~a~dP~~a 283 (330)
T 2yzr_A 254 PADAALMMQLGSDGVFVGSGIFKSENPLER 283 (330)
T ss_dssp HHHHHHHHHTTCSCEEESHHHHTSSCHHHH
T ss_pred HHHHHHHHHcCcCEEeeHHHHhcCCCHHHH
Confidence 9999999999999999999999 455443
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.4e-13 Score=131.98 Aligned_cols=203 Identities=11% Similarity=0.037 Sum_probs=128.4
Q ss_pred CCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCC-CCEEEEecCCCHHHHHH
Q 017176 3 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQ-HPIVLQIGGSNLDNLAK 81 (376)
Q Consensus 3 ~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~-~p~~vQL~g~~~~~~~~ 81 (376)
.++.++.||++|||++.++..+...+.+.||.|++...+ +.+..... ... .+.. .++.+.+ |..++.+.+
T Consensus 52 ~~~~l~~PIi~ApM~~~~~~~lA~Ava~~Gglg~i~~~~-s~e~~~~~---i~~----~p~~l~~v~~~~-g~~~~~~~~ 122 (351)
T 2c6q_A 52 KQTYSGVPIIAANMDTVGTFEMAKVLCKFSLFTAVHKHY-SLVQWQEF---AGQ----NPDCLEHLAASS-GTGSSDFEQ 122 (351)
T ss_dssp CCEEEECCEEECSSTTTSCHHHHHHHHHTTCEEECCTTC-CHHHHHHH---HHH----CGGGCTTEEEEE-CSSHHHHHH
T ss_pred cCccccCCEEECCCCCCCcHHHHHHHHHCCCEEEEcCCC-CHHHHHHH---Hhh----CchhhheeEeec-CCChHHHHH
Confidence 378899999999999999999998888888777664322 22211110 000 1110 2466665 556666665
Q ss_pred HHHHHHH-CCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHH
Q 017176 82 ATELANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIY 159 (376)
Q Consensus 82 aa~~~~~-~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~ 159 (376)
+...++. .|+|.|+++... | ++..+.+.++++++.+ ++||.+|.-. +.++ +
T Consensus 123 ~~~l~~~~~g~~~i~i~~~~-----------g-----~~~~~~~~i~~lr~~~~~~~vi~g~v~------t~e~-----A 175 (351)
T 2c6q_A 123 LEQILEAIPQVKYICLDVAN-----------G-----YSEHFVEFVKDVRKRFPQHTIMAGNVV------TGEM-----V 175 (351)
T ss_dssp HHHHHHHCTTCCEEEEECSC-----------T-----TBHHHHHHHHHHHHHCTTSEEEEEEEC------SHHH-----H
T ss_pred HHHHHhccCCCCEEEEEecC-----------C-----CcHHHHHHHHHHHHhcCCCeEEEEeCC------CHHH-----H
Confidence 5554443 389999887421 2 3456778899999888 7899887422 2333 2
Q ss_pred HHhhcCCccEEEEccCcc-ccCCCCCCCCCCCCcccHHHHHHH---HhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEE
Q 017176 160 KVSSLSPTRHFIIHSRKA-LLNGISPAENRTIPPLKYEYYYAL---LRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 235 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh~r~~-~~~g~~~~~~~~~~~~~~~~v~~~---~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vmi 235 (376)
+.+.++|+|.|.|..+.. ...+.. .+....+. ...+.++ .+. .++|||+.|||.++.|+.+++..|||+|++
T Consensus 176 ~~a~~aGaD~I~v~~g~G~~~~~r~-~~g~~~p~--~~~l~~v~~~~~~-~~ipvIa~GGI~~g~di~kAlalGA~~V~v 251 (351)
T 2c6q_A 176 EELILSGADIIKVGIGPGSVCTTRK-KTGVGYPQ--LSAVMECADAAHG-LKGHIISDGGCSCPGDVAKAFGAGADFVML 251 (351)
T ss_dssp HHHHHTTCSEEEECSSCSTTBCHHH-HHCBCCCH--HHHHHHHHHHHHH-TTCEEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHhCCCEEEECCCCCcCcCccc-cCCCCccH--HHHHHHHHHHHhh-cCCcEEEeCCCCCHHHHHHHHHcCCCceec
Confidence 234579999998853211 000000 00001111 3333333 333 379999999999999999999999999999
Q ss_pred chHHhhCCch
Q 017176 236 GRAAYQNPWY 245 (376)
Q Consensus 236 GRa~l~~P~l 245 (376)
||.++..+..
T Consensus 252 G~~fl~~~Es 261 (351)
T 2c6q_A 252 GGMLAGHSES 261 (351)
T ss_dssp STTTTTBTTS
T ss_pred cHHHhcCccC
Confidence 9999976543
|
| >3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A | Back alignment and structure |
|---|
Probab=99.46 E-value=6e-13 Score=122.39 Aligned_cols=151 Identities=17% Similarity=0.220 Sum_probs=107.2
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHH
Q 017176 80 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 159 (376)
Q Consensus 80 ~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~ 159 (376)
.+.|+.++++|+..|....+||.+. |..+ |.+-|++|+.+.+ |++.+++||.-|.|+|. +.+ +
T Consensus 21 ~eqa~iae~aGa~av~~l~~~p~d~--r~~g-Gv~Rm~dp~~I~~----I~~aVsIPVm~k~righ-----~~E-----A 83 (291)
T 3o07_A 21 PEQAKIAEKSGACAVMALESIPADM--RKSG-KVCRMSDPKMIKD----IMNSVSIPVMAKVRIGH-----FVE-----A 83 (291)
T ss_dssp HHHHHHHHHHTCSEEEECSSCHHHH--HTTT-CCCCCCCHHHHHH----HHTTCSSCEEEEEETTC-----HHH-----H
T ss_pred HHHHHHHHHhCchhhhhccCCCchh--hhcC-CccccCCHHHHHH----HHHhCCCCeEEEEecCc-----HHH-----H
Confidence 3578889999999999999999873 3444 7788999987655 46778899999999974 222 4
Q ss_pred HHhhcCCccEEEEccC-cc----------ccC-------------------C-----CCC--------------------
Q 017176 160 KVSSLSPTRHFIIHSR-KA----------LLN-------------------G-----ISP-------------------- 184 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh~r-~~----------~~~-------------------g-----~~~-------------------- 184 (376)
+++++.|+|+|.-+-+ +. .++ | +.+
T Consensus 84 qilea~GaD~IDesevltpad~~~~I~k~~f~vpfv~~~~~l~EAlrri~eGA~mIrTtge~gtg~v~~av~h~r~~~~~ 163 (291)
T 3o07_A 84 QIIEALEVDYIDESEVLTPADWTHHIEKDKFKVPFVCGAKDLGEALRRINEGAAMIRTKGEAGTGDVSEAVKHIRRITEE 163 (291)
T ss_dssp HHHHHTTCSEEEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHHTCSEEEECCCTTSCCTHHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEecccCCCHHHHHHHhhhhcCCCcEEeeCCCHHHHHHHHHCCCCEEEecCcCCCccHHHHHHHHHHHHHH
Confidence 5567788888864422 00 000 0 000
Q ss_pred ------C-CCCC------CCcccHHHHHHHHhhCCCCeE--EEecCCCCHHHHHHHHHcCcCeeEEchHHhhC--Cchhh
Q 017176 185 ------A-ENRT------IPPLKYEYYYALLRDFPDLTF--TLNGGINTVDEVNAALRKGAHHVMVGRAAYQN--PWYTL 247 (376)
Q Consensus 185 ------~-~~~~------~~~~~~~~v~~~~~~~~~ipV--i~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~--P~lf~ 247 (376)
. ..+. -....|+.+.++++. +++|| |+||||.|++|+.+++++|||+||+|||++.. |+.+.
T Consensus 164 i~~l~g~~t~~el~~~a~~~~ad~elI~~Ike~-~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~A 242 (291)
T 3o07_A 164 IKACQQLKSEDDIAKVAEEMRVPVSLLKDVLEK-GKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLA 242 (291)
T ss_dssp HHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHH-TSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHH
T ss_pred HHHHHcCCCHHHhhhcccccCCCHHHHHHHHHc-cCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHH
Confidence 0 0000 002348888888876 58998 57999999999999999999999999999984 55443
Q ss_pred H
Q 017176 248 G 248 (376)
Q Consensus 248 ~ 248 (376)
+
T Consensus 243 k 243 (291)
T 3o07_A 243 T 243 (291)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.6e-13 Score=136.52 Aligned_cols=131 Identities=11% Similarity=0.034 Sum_probs=91.6
Q ss_pred HHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHH
Q 017176 79 LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDF 157 (376)
Q Consensus 79 ~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~ 157 (376)
..+.++.+.++|+|.|+||..||. .+.+.++++++++.. ++||.++-- .+.++
T Consensus 232 ~~~~a~~l~~aG~d~I~id~a~g~----------------~~~~~~~i~~ir~~~p~~~Vi~g~v------~t~e~---- 285 (496)
T 4fxs_A 232 NEERVKALVEAGVDVLLIDSSHGH----------------SEGVLQRIRETRAAYPHLEIIGGNV------ATAEG---- 285 (496)
T ss_dssp CHHHHHHHHHTTCSEEEEECSCTT----------------SHHHHHHHHHHHHHCTTCCEEEEEE------CSHHH----
T ss_pred hHHHHHHHHhccCceEEecccccc----------------chHHHHHHHHHHHHCCCceEEEccc------CcHHH----
Confidence 345566677789999999988762 245678899998887 788888421 12222
Q ss_pred HHHHhhcCCccEEEEccCc------cccCCCCCCCCCCCCcccHHHHHHHHhhC--CCCeEEEecCCCCHHHHHHHHHcC
Q 017176 158 IYKVSSLSPTRHFIIHSRK------ALLNGISPAENRTIPPLKYEYYYALLRDF--PDLTFTLNGGINTVDEVNAALRKG 229 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh~r~------~~~~g~~~~~~~~~~~~~~~~v~~~~~~~--~~ipVi~nGgI~s~~da~~~l~~G 229 (376)
++.+.++|+|+|.|.++. ....|.+ ...+..+.++++.. .++|||++|||.+++|+.++++.|
T Consensus 286 -a~~l~~aGaD~I~Vg~g~Gs~~~tr~~~g~g--------~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~G 356 (496)
T 4fxs_A 286 -ARALIEAGVSAVKVGIGPGSICTTRIVTGVG--------VPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAG 356 (496)
T ss_dssp -HHHHHHHTCSEEEECSSCCTTBCHHHHHCCC--------CCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTT
T ss_pred -HHHHHHhCCCEEEECCCCCcCcccccccCCC--------ccHHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcC
Confidence 223457899999985322 1111211 11255555555421 279999999999999999999999
Q ss_pred cCeeEEchHHhhCCc
Q 017176 230 AHHVMVGRAAYQNPW 244 (376)
Q Consensus 230 ad~VmiGRa~l~~P~ 244 (376)
||+||+||+++....
T Consensus 357 Ad~V~iGs~f~~t~E 371 (496)
T 4fxs_A 357 ASCVMVGSMFAGTEE 371 (496)
T ss_dssp CSEEEESTTTTTBTT
T ss_pred CCeEEecHHHhcCCC
Confidence 999999999988654
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.2e-12 Score=118.62 Aligned_cols=150 Identities=14% Similarity=0.205 Sum_probs=110.2
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc----Ccc---
Q 017176 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT----NVP--- 136 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~----~~p--- 136 (376)
+.|+.+..+-.++++ ++.+.++|+|.|-+ |+.++.+|+.+.++++.+...+ +.+
T Consensus 74 ~ipv~v~ggi~~~~~----~~~~l~~Gad~V~l---------------g~~~l~~p~~~~~~~~~~g~~~~~~ld~~~~~ 134 (244)
T 2y88_A 74 DVQVELSGGIRDDES----LAAALATGCARVNV---------------GTAALENPQWCARVIGEHGDQVAVGLDVQIID 134 (244)
T ss_dssp SSEEEEESSCCSHHH----HHHHHHTTCSEEEE---------------CHHHHHCHHHHHHHHHHHGGGEEEEEEEEEET
T ss_pred CCcEEEECCCCCHHH----HHHHHHcCCCEEEE---------------CchHhhChHHHHHHHHHcCCCEEEEEeccccC
Confidence 668887766677775 44455679998865 5556678899999998875432 222
Q ss_pred --EEEEecCCCCCCc-cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEe
Q 017176 137 --VSVKCRIGVDDHD-SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN 213 (376)
Q Consensus 137 --v~vKiR~g~~~~~-~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~n 213 (376)
.+||+| ||.+.. +..+.+ +.+++.|++.|.+|+++....+. ..+++.+.++++. .++|||++
T Consensus 135 ~~~~v~~~-g~~~~~~~~~e~~----~~~~~~G~~~i~~~~~~~~~~~~---------g~~~~~~~~l~~~-~~ipvia~ 199 (244)
T 2y88_A 135 GEHRLRGR-GWETDGGDLWDVL----ERLDSEGCSRFVVTDITKDGTLG---------GPNLDLLAGVADR-TDAPVIAS 199 (244)
T ss_dssp TEEEEEEG-GGTEEEEEHHHHH----HHHHHTTCCCEEEEETTTTTTTS---------CCCHHHHHHHHTT-CSSCEEEE
T ss_pred CCCEEEEC-CccCCCCCHHHHH----HHHHhCCCCEEEEEecCCccccC---------CCCHHHHHHHHHh-CCCCEEEE
Confidence 368888 886532 333332 23457899999999987532111 1148888888775 48999999
Q ss_pred cCCCCHHHHHHHHHc---CcCeeEEchHHhhCCchhh
Q 017176 214 GGINTVDEVNAALRK---GAHHVMVGRAAYQNPWYTL 247 (376)
Q Consensus 214 GgI~s~~da~~~l~~---Gad~VmiGRa~l~~P~lf~ 247 (376)
|||.+++|+.++++. |||+||+||+++.+||.|.
T Consensus 200 GGI~~~~d~~~~~~~~~~Gad~v~vG~al~~~~~~~~ 236 (244)
T 2y88_A 200 GGVSSLDDLRAIATLTHRGVEGAIVGKALYARRFTLP 236 (244)
T ss_dssp SCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTSSCHH
T ss_pred CCCCCHHHHHHHHhhccCCCCEEEEcHHHHCCCcCHH
Confidence 999999999999985 9999999999999999863
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3.7e-13 Score=138.27 Aligned_cols=203 Identities=8% Similarity=-0.002 Sum_probs=128.1
Q ss_pred HHHhCCCcEEEecceeecccccccchhhhhh-ccCCCCCCEEEEecCCCHH--H-------HHHHHHHHHHCCCCEEEec
Q 017176 28 ARLISKHAWLYTEMLAAETIIYQQGNLDRFL-AFSPEQHPIVLQIGGSNLD--N-------LAKATELANAYNYDEINLN 97 (376)
Q Consensus 28 ~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~-~~~~~~~p~~vQL~g~~~~--~-------~~~aa~~~~~~G~d~IeiN 97 (376)
..+.|.-++.++++..............+.+ .+. ...++-+|+.|.-.+ + ..+.++.+.++|+|.|.||
T Consensus 289 ~~~~Ga~~l~~~dl~~~~~~~~~~~~~~~~i~~i~-~~~~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l~aGad~V~ig 367 (555)
T 1jvn_A 289 YYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAA-KTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGADKVSIG 367 (555)
T ss_dssp HHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHT-TTCCSCEEEESSCSCEECTTCCEECHHHHHHHHHHHTCSEEEEC
T ss_pred HHHcCCCEEEEEeCCccccccCCCchHHHHHHHHH-hhCCCcEEEeCccccchhcccccchHHHHHHHHHHcCCCEEEEC
Confidence 3455644677787765432111111112222 222 233566788775422 1 4466777778899999999
Q ss_pred CCCCCccccCCCCccccccCCHHHHHHHHHHHhc-ccCccEEEE--------------------------------ecCC
Q 017176 98 CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-NTNVPVSVK--------------------------------CRIG 144 (376)
Q Consensus 98 ~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~-~~~~pv~vK--------------------------------iR~g 144 (376)
.+|- .+..+..+ ++.++.+|+++.++.+..-+ .+-+-+.+| .+-|
T Consensus 368 t~~~-~~~~~~~~-~~~~~~~~~~i~~~~~~~g~~~ivv~iD~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~G 445 (555)
T 1jvn_A 368 TDAV-YAAEKYYE-LGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYPGPNGEKYCWYQCTIKG 445 (555)
T ss_dssp HHHH-HHHHHHHH-TTSCCCSCSHHHHHHHHHCGGGEEEEECEEEEEESSGGGCSSCCEECSSCCTTCCCEEEEEEEETT
T ss_pred CHHh-hCchhhcc-ccccccCHHHHHHHHHHhCCCcEEEEEEccccccccccccccccccccccCCCCCcceeEEEEEec
Confidence 9882 21111111 33357889999999987642 221112222 2236
Q ss_pred CCCCc--cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHH
Q 017176 145 VDDHD--SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 222 (376)
Q Consensus 145 ~~~~~--~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da 222 (376)
|.+.. +..+. ++.+++.|++.|.+|++++.... .+ .+++.+.++++.. ++|||++|||.|++|+
T Consensus 446 w~~~~~~~~~e~----a~~~~~~Ga~~il~t~~~~dG~~-~G--------~d~~li~~l~~~~-~iPVIasGGi~s~~d~ 511 (555)
T 1jvn_A 446 GRESRDLGVWEL----TRACEALGAGEILLNCIDKDGSN-SG--------YDLELIEHVKDAV-KIPVIASSGAGVPEHF 511 (555)
T ss_dssp TTEEEEEEHHHH----HHHHHHTTCCEEEECCGGGTTTC-SC--------CCHHHHHHHHHHC-SSCEEECSCCCSHHHH
T ss_pred CccCCCCCHHHH----HHHHHHcCCCEEEEeCCCCCCCC-CC--------CCHHHHHHHHHhC-CccEEEECCCCCHHHH
Confidence 66532 23333 34457899999999998752111 11 1388998988764 9999999999999999
Q ss_pred HHHHH-cCcCeeEEchHHhhCCchhh
Q 017176 223 NAALR-KGAHHVMVGRAAYQNPWYTL 247 (376)
Q Consensus 223 ~~~l~-~Gad~VmiGRa~l~~P~lf~ 247 (376)
.++++ +|||+||+||+++.+||.|.
T Consensus 512 ~~~~~~~G~~gvivg~a~~~~~~~~~ 537 (555)
T 1jvn_A 512 EEAFLKTRADACLGAGMFHRGEFTVN 537 (555)
T ss_dssp HHHHHHSCCSEEEESHHHHTTSCCHH
T ss_pred HHHHHhcCChHHHHHHHHHcCCCCHH
Confidence 99998 89999999999999999863
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-12 Score=132.56 Aligned_cols=132 Identities=14% Similarity=0.082 Sum_probs=92.3
Q ss_pred HHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHH
Q 017176 79 LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDF 157 (376)
Q Consensus 79 ~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~ 157 (376)
..+.++.+.++|+|.|+||.+|+. +..+.++++++++.. ++|+.++.- .+.++
T Consensus 230 ~~~~a~~l~~aG~d~I~id~a~g~----------------~~~~~~~v~~i~~~~p~~~Vi~g~v------~t~e~---- 283 (490)
T 4avf_A 230 TGERVAALVAAGVDVVVVDTAHGH----------------SKGVIERVRWVKQTFPDVQVIGGNI------ATAEA---- 283 (490)
T ss_dssp HHHHHHHHHHTTCSEEEEECSCCS----------------BHHHHHHHHHHHHHCTTSEEEEEEE------CSHHH----
T ss_pred hHHHHHHHhhcccceEEecccCCc----------------chhHHHHHHHHHHHCCCceEEEeee------CcHHH----
Confidence 345566667789999999987653 245678888998877 778888521 12322
Q ss_pred HHHHhhcCCccEEEEccC------ccccCCCCCCCCCCCCcccHHHHHHHHhhC--CCCeEEEecCCCCHHHHHHHHHcC
Q 017176 158 IYKVSSLSPTRHFIIHSR------KALLNGISPAENRTIPPLKYEYYYALLRDF--PDLTFTLNGGINTVDEVNAALRKG 229 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh~r------~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~--~~ipVi~nGgI~s~~da~~~l~~G 229 (376)
++.+.++|+|+|.|..+ +....|.+ ...+..+.++.+.. .++|||++|||.+++|+.++++.|
T Consensus 284 -a~~l~~aGaD~I~vg~g~Gs~~~t~~~~g~g--------~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~G 354 (490)
T 4avf_A 284 -AKALAEAGADAVKVGIGPGSICTTRIVAGVG--------VPQISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAG 354 (490)
T ss_dssp -HHHHHHTTCSEEEECSSCSTTCHHHHHTCBC--------CCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHT
T ss_pred -HHHHHHcCCCEEEECCCCCcCCCccccCCCC--------ccHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcC
Confidence 23345799999998321 11111211 11256666665532 379999999999999999999999
Q ss_pred cCeeEEchHHhhCCch
Q 017176 230 AHHVMVGRAAYQNPWY 245 (376)
Q Consensus 230 ad~VmiGRa~l~~P~l 245 (376)
||+||+|++++....-
T Consensus 355 Ad~V~vGs~~~~~~Es 370 (490)
T 4avf_A 355 AYCVMMGSMFAGTEEA 370 (490)
T ss_dssp CSEEEECTTTTTBTTS
T ss_pred CCeeeecHHHhcCCCC
Confidence 9999999999986653
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=99.30 E-value=4.4e-11 Score=110.03 Aligned_cols=152 Identities=16% Similarity=0.182 Sum_probs=105.6
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEE--
Q 017176 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK-- 140 (376)
Q Consensus 63 ~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vK-- 140 (376)
.+.|+.+..+-.++++ ++.+.++|+|.|-+ |+.++.+|+.+.++++.....+.+.+.++
T Consensus 74 ~~ipv~v~ggI~~~~~----~~~~l~~Gad~V~l---------------g~~~l~~p~~~~~~~~~~g~~~~~~l~~~~g 134 (244)
T 1vzw_A 74 MDIKVELSGGIRDDDT----LAAALATGCTRVNL---------------GTAALETPEWVAKVIAEHGDKIAVGLDVRGT 134 (244)
T ss_dssp CSSEEEEESSCCSHHH----HHHHHHTTCSEEEE---------------CHHHHHCHHHHHHHHHHHGGGEEEEEEEETT
T ss_pred cCCcEEEECCcCCHHH----HHHHHHcCCCEEEE---------------CchHhhCHHHHHHHHHHcCCcEEEEEEccCC
Confidence 3678877766677775 44455679998855 55566788889998887654333333333
Q ss_pred --ecCCCCCCc-cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCC
Q 017176 141 --CRIGVDDHD-SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 217 (376)
Q Consensus 141 --iR~g~~~~~-~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~ 217 (376)
.+-||.+.. +..+.+ +.+++.|++.|.+|++++...+. ..+++.+.++++.. ++|||++|||.
T Consensus 135 ~v~~~g~~~~~~~~~e~~----~~~~~~G~~~i~~~~~~~~~~~~---------g~~~~~~~~i~~~~-~ipvia~GGI~ 200 (244)
T 1vzw_A 135 TLRGRGWTRDGGDLYETL----DRLNKEGCARYVVTDIAKDGTLQ---------GPNLELLKNVCAAT-DRPVVASGGVS 200 (244)
T ss_dssp EECCSSSCCCCCBHHHHH----HHHHHTTCCCEEEEEC----------------CCCHHHHHHHHHTC-SSCEEEESCCC
T ss_pred EEEEcCcccCCCCHHHHH----HHHHhCCCCEEEEeccCcccccC---------CCCHHHHHHHHHhc-CCCEEEECCCC
Confidence 134676532 333432 23457999999999876421111 12478888888764 89999999999
Q ss_pred CHHHHHHHHHc---CcCeeEEchHHhhCCchhh
Q 017176 218 TVDEVNAALRK---GAHHVMVGRAAYQNPWYTL 247 (376)
Q Consensus 218 s~~da~~~l~~---Gad~VmiGRa~l~~P~lf~ 247 (376)
+++++.++++. |||+|++||+++.+||.|.
T Consensus 201 ~~~d~~~~~~~~~~Gadgv~vG~al~~~~~~~~ 233 (244)
T 1vzw_A 201 SLDDLRAIAGLVPAGVEGAIVGKALYAKAFTLE 233 (244)
T ss_dssp SHHHHHHHHTTGGGTEEEEEECHHHHTTSSCHH
T ss_pred CHHHHHHHHhhccCCCceeeeeHHHHcCCCCHH
Confidence 99999999996 9999999999999999753
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.29 E-value=5.1e-12 Score=117.69 Aligned_cols=181 Identities=15% Similarity=0.108 Sum_probs=116.1
Q ss_pred HHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCc
Q 017176 24 YRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSP 103 (376)
Q Consensus 24 ~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~ 103 (376)
+.....+.| +..+..-.+.. .+.+.+.+... ..++-+|++|... .. ++.+.+ +|+|-|-+
T Consensus 43 ~A~~~~~~G-a~~l~vvDL~~----~n~~~i~~i~~----~~~~pv~vgGGir-~~-~~~~~l--~Ga~~Vii------- 102 (260)
T 2agk_A 43 YAKLYKDRD-VQGCHVIKLGP----NNDDAAREALQ----ESPQFLQVGGGIN-DT-NCLEWL--KWASKVIV------- 102 (260)
T ss_dssp HHHHHHHTT-CTTCEEEEESS----SCHHHHHHHHH----HSTTTSEEESSCC-TT-THHHHT--TTCSCEEE-------
T ss_pred HHHHHHHcC-CCEEEEEeCCC----CCHHHHHHHHh----cCCceEEEeCCCC-HH-HHHHHh--cCCCEEEE-------
Confidence 444456665 66555555553 11111222221 2234567877665 33 566655 89886643
Q ss_pred cccCCCCccccccCC-----HHHHHHHHHHHh-cccCccEEEEec---------CCCCCCc--cHH-HHHHHHHHHhhcC
Q 017176 104 KVAGHGCFGVSLMLD-----PKFVGEAMSVIA-ANTNVPVSVKCR---------IGVDDHD--SYN-QLCDFIYKVSSLS 165 (376)
Q Consensus 104 ~v~r~g~yG~~l~~~-----~~~~~eiv~~v~-~~~~~pv~vKiR---------~g~~~~~--~~~-~~~~~i~~~~e~~ 165 (376)
|+.++++ |+++.++++++. +.+-+++.+|++ .||.+.. +.. +++ +.+++.
T Consensus 103 --------gs~a~~~~g~~~p~~~~~~~~~~g~~~ivv~iD~k~~~~~g~~V~~~gw~~~t~~~~~~e~a----~~~~~~ 170 (260)
T 2agk_A 103 --------TSWLFTKEGHFQLKRLERLTELCGKDRIVVDLSCRKTQDGRWIVAMNKWQTLTDLELNADTF----RELRKY 170 (260)
T ss_dssp --------CGGGBCTTCCBCHHHHHHHHHHHCGGGEEEEEEEEEEETTEEEEEETTTTEEEEEEESHHHH----HHHTTT
T ss_pred --------CcHHHhhcCCCCHHHHHHHHHHhCcCcEEEEEEeeecCCCceEEEEcCCccccCccHHHHHH----HHHHHh
Confidence 6667777 999999999997 443334444422 2676532 222 443 345678
Q ss_pred CccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC---CCeEEEecCCCCHHHHHHHHH-c-CcCeeEEchHH-
Q 017176 166 PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP---DLTFTLNGGINTVDEVNAALR-K-GAHHVMVGRAA- 239 (376)
Q Consensus 166 Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~---~ipVi~nGgI~s~~da~~~l~-~-Gad~VmiGRa~- 239 (376)
++.|++|+++..... .+ .+++.+.++.+..+ ++|||++|||.|++|+.++++ + |||+||+||++
T Consensus 171 -a~~il~t~i~~dG~~-~G--------~d~eli~~l~~~~~~~~~iPVIasGGi~s~ed~~~l~~~~~G~~gvivg~al~ 240 (260)
T 2agk_A 171 -TNEFLIHAADVEGLC-GG--------IDELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFGSSLD 240 (260)
T ss_dssp -CSEEEEEC--------CC--------CCHHHHHHHHHHHTTCSSCEEEEESCCCCTHHHHHHHHHHTTCEEEECCTTBG
T ss_pred -cCEEEEEeeccccCc-CC--------CCHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHhcCCCCEEEeeCCHH
Confidence 999999998753211 11 14889988887643 899999999999999999998 5 99999999997
Q ss_pred -hhCC-chh
Q 017176 240 -YQNP-WYT 246 (376)
Q Consensus 240 -l~~P-~lf 246 (376)
+.+| |.|
T Consensus 241 l~~g~~~~~ 249 (260)
T 2agk_A 241 IFGGNLVKF 249 (260)
T ss_dssp GGTCSSBCH
T ss_pred HcCCCCCCH
Confidence 8888 875
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-10 Score=118.13 Aligned_cols=138 Identities=17% Similarity=0.079 Sum_probs=96.7
Q ss_pred HHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHH
Q 017176 79 LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDF 157 (376)
Q Consensus 79 ~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~ 157 (376)
..+.++.+.++|+|.|+||.+|. +++...++++++++.+ ++||.+|- + .+.++
T Consensus 256 ~~~~a~~~~~aG~d~v~i~~~~G----------------~~~~~~~~i~~i~~~~~~~pvi~~~---v---~t~~~---- 309 (514)
T 1jcn_A 256 DKYRLDLLTQAGVDVIVLDSSQG----------------NSVYQIAMVHYIKQKYPHLQVIGGN---V---VTAAQ---- 309 (514)
T ss_dssp HHHHHHHHHHTTCSEEEECCSCC----------------CSHHHHHHHHHHHHHCTTCEEEEEE---E---CSHHH----
T ss_pred hHHHHHHHHHcCCCEEEeeccCC----------------cchhHHHHHHHHHHhCCCCceEecc---c---chHHH----
Confidence 45566778889999999998652 2356788999999988 88998861 1 22322
Q ss_pred HHHHhhcCCccEEEEcc--C-ccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeE
Q 017176 158 IYKVSSLSPTRHFIIHS--R-KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM 234 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh~--r-~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vm 234 (376)
++.++++|+|+|.|.. + ....... ..+.......+..+.++++.. ++|||++|||.+++|+.++++.|||+||
T Consensus 310 -a~~l~~aGad~I~vg~~~G~~~~t~~~--~~~g~~~~~~~~~~~~~~~~~-~ipVia~GGI~~~~di~kala~GAd~V~ 385 (514)
T 1jcn_A 310 -AKNLIDAGVDGLRVGMGCGSICITQEV--MACGRPQGTAVYKVAEYARRF-GVPIIADGGIQTVGHVVKALALGASTVM 385 (514)
T ss_dssp -HHHHHHHTCSEEEECSSCSCCBTTBCC--CSCCCCHHHHHHHHHHHHGGG-TCCEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred -HHHHHHcCCCEEEECCCCCcccccccc--cCCCccchhHHHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHHcCCCeee
Confidence 2334579999999821 1 1000000 000000122356667777664 8999999999999999999999999999
Q ss_pred EchHHhhCCchh
Q 017176 235 VGRAAYQNPWYT 246 (376)
Q Consensus 235 iGRa~l~~P~lf 246 (376)
+||+++.+|+..
T Consensus 386 iG~~~l~~~e~~ 397 (514)
T 1jcn_A 386 MGSLLAATTEAP 397 (514)
T ss_dssp ESTTTTTSTTSS
T ss_pred ECHHHHcCCcCC
Confidence 999999999865
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=6.4e-11 Score=120.46 Aligned_cols=130 Identities=16% Similarity=0.168 Sum_probs=88.1
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHH
Q 017176 80 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFI 158 (376)
Q Consensus 80 ~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i 158 (376)
.+.++.+.++|+|.|.|+..+|. ...+.++++++++.. +.|+.++-- .+.++
T Consensus 258 ~era~aLveaGvd~I~Id~a~g~----------------~~~v~~~i~~i~~~~~~~~vi~g~v------~t~e~----- 310 (511)
T 3usb_A 258 MTRIDALVKASVDAIVLDTAHGH----------------SQGVIDKVKEVRAKYPSLNIIAGNV------ATAEA----- 310 (511)
T ss_dssp HHHHHHHHHTTCSEEEEECSCTT----------------SHHHHHHHHHHHHHCTTSEEEEEEE------CSHHH-----
T ss_pred HHHHHHHHhhccceEEecccccc----------------hhhhhhHHHHHHHhCCCceEEeeee------ccHHH-----
Confidence 34455667789999999976542 244678888888876 478887521 12332
Q ss_pred HHHhhcCCccEEEEccC------ccccCCCCCCCCCCCCcccHHHHHHH---HhhCCCCeEEEecCCCCHHHHHHHHHcC
Q 017176 159 YKVSSLSPTRHFIIHSR------KALLNGISPAENRTIPPLKYEYYYAL---LRDFPDLTFTLNGGINTVDEVNAALRKG 229 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r------~~~~~g~~~~~~~~~~~~~~~~v~~~---~~~~~~ipVi~nGgI~s~~da~~~l~~G 229 (376)
++.+.++|+|+|.|..+ +....|.+ .+ .+..+.++ .++. ++|||++|||.+++|+.++++.|
T Consensus 311 a~~~~~aGad~i~vg~g~gsi~~~~~~~g~g------~p--~~~~l~~v~~~~~~~-~iPVIa~GGI~~~~di~kala~G 381 (511)
T 3usb_A 311 TKALIEAGANVVKVGIGPGSICTTRVVAGVG------VP--QLTAVYDCATEARKH-GIPVIADGGIKYSGDMVKALAAG 381 (511)
T ss_dssp HHHHHHHTCSEEEECSSCSTTCCHHHHHCCC------CC--HHHHHHHHHHHHHTT-TCCEEEESCCCSHHHHHHHHHTT
T ss_pred HHHHHHhCCCEEEECCCCccccccccccCCC------CC--cHHHHHHHHHHHHhC-CCcEEEeCCCCCHHHHHHHHHhC
Confidence 23345789999998221 11111211 11 24444444 4443 79999999999999999999999
Q ss_pred cCeeEEchHHhhCCch
Q 017176 230 AHHVMVGRAAYQNPWY 245 (376)
Q Consensus 230 ad~VmiGRa~l~~P~l 245 (376)
||+||+||+++....-
T Consensus 382 A~~V~vGs~~~~~~es 397 (511)
T 3usb_A 382 AHVVMLGSMFAGVAES 397 (511)
T ss_dssp CSEEEESTTTTTBTTS
T ss_pred chhheecHHHhcCccC
Confidence 9999999998876553
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-09 Score=100.26 Aligned_cols=151 Identities=9% Similarity=0.044 Sum_probs=104.6
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhc-ccCccE----
Q 017176 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-NTNVPV---- 137 (376)
Q Consensus 63 ~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~-~~~~pv---- 137 (376)
.+.|+++.-+-.++++ ++.+.++|+|+|-+ |..++.+|+.+.++++.... ...+.+
T Consensus 73 ~~ipvi~~ggI~~~~~----~~~~~~~Gad~V~l---------------g~~~l~~p~~~~~~~~~~g~~~i~~~~~~~~ 133 (253)
T 1thf_D 73 IDIPFTVGGGIHDFET----ASELILRGADKVSI---------------NTAAVENPSLITQIAQTFGSQAVVVAIDAKR 133 (253)
T ss_dssp CCSCEEEESSCCSHHH----HHHHHHTTCSEEEE---------------SHHHHHCTHHHHHHHHHHCGGGEEEEEEEEE
T ss_pred CCCCEEEeCCCCCHHH----HHHHHHcCCCEEEE---------------ChHHHhChHHHHHHHHHcCCCcEEEEEEEEc
Confidence 4678887766667765 33444579998855 55566778888888888642 211222
Q ss_pred -----EEEecCCCCCCc--cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeE
Q 017176 138 -----SVKCRIGVDDHD--SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF 210 (376)
Q Consensus 138 -----~vKiR~g~~~~~--~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipV 210 (376)
.|+++ ||.+.. +..+.++ .+++.|++.|.+|+++....+. + .+++.+.++++.. ++||
T Consensus 134 ~~g~~~v~~~-g~~~~~~~~~~e~~~----~~~~~G~~~i~~~~~~~~g~~~-g--------~~~~~~~~l~~~~-~ipv 198 (253)
T 1thf_D 134 VDGEFMVFTY-SGKKNTGILLRDWVV----EVEKRGAGEILLTSIDRDGTKS-G--------YDTEMIRFVRPLT-TLPI 198 (253)
T ss_dssp ETTEEEEEET-TTTEEEEEEHHHHHH----HHHHTTCSEEEEEETTTTTSCS-C--------CCHHHHHHHGGGC-CSCE
T ss_pred cCCcEEEEEC-CCccccCCCHHHHHH----HHHHCCCCEEEEEeccCCCCCC-C--------CCHHHHHHHHHhc-CCCE
Confidence 45553 565421 2334332 3346899999999765421111 1 1378888887764 8999
Q ss_pred EEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchhh
Q 017176 211 TLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247 (376)
Q Consensus 211 i~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~ 247 (376)
|++|||.+++|+.+++++|||+|++||+++.+||-+.
T Consensus 199 ia~GGI~~~~d~~~~~~~Gadgv~vGsal~~~~~~~~ 235 (253)
T 1thf_D 199 IASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVR 235 (253)
T ss_dssp EEESCCCSHHHHHHHHHTTCSEEEESHHHHTTCSCHH
T ss_pred EEECCCCCHHHHHHHHHcCChHHHHHHHHHcCCCCHH
Confidence 9999999999999999999999999999999997653
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=99.17 E-value=3.1e-10 Score=102.84 Aligned_cols=164 Identities=15% Similarity=0.109 Sum_probs=101.2
Q ss_pred EEEEecCC----CHHHHHHHHHHHHHCCCCEEEec-----------CCCCCccccCCC--C-----------------cc
Q 017176 67 IVLQIGGS----NLDNLAKATELANAYNYDEINLN-----------CGCPSPKVAGHG--C-----------------FG 112 (376)
Q Consensus 67 ~~vQL~g~----~~~~~~~aa~~~~~~G~d~IeiN-----------~gcP~~~v~r~g--~-----------------yG 112 (376)
+.+|+.+. +++...+.|+.+.++|+++|.++ .++|.-...+++ . .|
T Consensus 9 ~~~q~~~~~p~~~~~~~~~~a~~~~~~Ga~~i~~~~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~i~~~~~~i~~~~~~G 88 (223)
T 1y0e_A 9 VSCQALPDEPLHSSFIMSKMALAAYEGGAVGIRANTKEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIESQ 88 (223)
T ss_dssp EECCCCTTSTTCCHHHHHHHHHHHHHHTCSEEEEESHHHHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHHHHHHHHHT
T ss_pred EEecCCCCCCCCCCccHHHHHHHHHHCCCeeeccCCHHHHHHHHHhcCCCEEeeeccCCCccccccCCcHHHHHHHHhCC
Confidence 56677766 56777778888888888887775 356652111111 0 01
Q ss_pred cc-------ccCCH-HHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEc--cCccccCC
Q 017176 113 VS-------LMLDP-KFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNG 181 (376)
Q Consensus 113 ~~-------l~~~~-~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh--~r~~~~~g 181 (376)
+. ...+| ..+.++++.+++.. +.++.+.+. +.++.. .+++.|+|+|.+. +.+....+
T Consensus 89 ad~v~l~~~~~~~p~~~~~~~i~~~~~~~~~~~v~~~~~-------t~~e~~-----~~~~~G~d~i~~~~~g~t~~~~~ 156 (223)
T 1y0e_A 89 CEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIA-------TVEEAK-----NAARLGFDYIGTTLHGYTSYTQG 156 (223)
T ss_dssp CSEEEEECSCSCCSSSCHHHHHHHHHHHCTTSEEEEECS-------SHHHHH-----HHHHTTCSEEECTTTTSSTTSTT
T ss_pred CCEEEEeeecccCcccCHHHHHHHHHHhCCCceEEecCC-------CHHHHH-----HHHHcCCCEEEeCCCcCcCCCCC
Confidence 11 11122 23456666666654 555554321 233322 2457899998763 33221111
Q ss_pred CCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchhhHhh
Q 017176 182 ISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250 (376)
Q Consensus 182 ~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~ 250 (376)
. ......++.++++++.. ++||+++|||.|++++.++++.|||+|++||+++. |+...+.+
T Consensus 157 ~------~~~~~~~~~~~~~~~~~-~ipvia~GGI~~~~~~~~~~~~Gad~v~vG~al~~-p~~~~~~~ 217 (223)
T 1y0e_A 157 Q------LLYQNDFQFLKDVLQSV-DAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAITR-PKEITKRF 217 (223)
T ss_dssp C------CTTHHHHHHHHHHHHHC-CSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHC-HHHHHHHH
T ss_pred C------CCCcccHHHHHHHHhhC-CCCEEEecCCCCHHHHHHHHHcCCCEEEEChHHcC-cHHHHHHH
Confidence 0 00223467788888775 89999999999999999999999999999999665 87654443
|
| >2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* | Back alignment and structure |
|---|
Probab=99.16 E-value=2.1e-10 Score=131.97 Aligned_cols=202 Identities=11% Similarity=0.043 Sum_probs=134.0
Q ss_pred CCcEEEccCC-CCChHHHHHHHHHhCCCcEE-EecceeecccccccchhhhhhccCCCCCCEEEEecCCCHH---HHHHH
Q 017176 8 PPWFSVAPMM-DWTDNHYRTLARLISKHAWL-YTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLD---NLAKA 82 (376)
Q Consensus 8 ~nri~lAPM~-~~td~~~r~~~~~~Gg~gl~-~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~---~~~~a 82 (376)
+.||++|||. ++++..+...+.+.||.|.+ -..+.+.+.+.....+++ +..+.+.|++++++-.+|+ .+.+.
T Consensus 582 ~~PIi~a~M~~~vs~~~LaaAva~aGglG~i~g~g~~~~e~l~~~i~~vk---~~~~~~~p~gvN~~~~~p~~~~~~~~~ 658 (2060)
T 2uva_G 582 VPPVMVAGMTPTTVPWDFVAATMNAGYHIELAGGGYYNAQKMSDAISKIE---KAIPPGRGITVNLIYVNPRAMGWQIPL 658 (2060)
T ss_dssp SCSEEECCCTTTTCSHHHHHHHHHTTCEECEEGGGCCSHHHHHHHHHHHG---GGSCTTCCEEEEEETTCTTHHHHHHHH
T ss_pred cceEEecCCCCccccHHHHHHHHHCCCEEEECcCCCCCHHHHHHHHHHHH---hhcccCCCeEecccccCcccchhHHHH
Confidence 6799999999 69999999999999988876 334444333322222222 2222478999999876554 24567
Q ss_pred HHHHHHCCCCE--EEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHH
Q 017176 83 TELANAYNYDE--INLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 160 (376)
Q Consensus 83 a~~~~~~G~d~--IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~ 160 (376)
.+.+.+.|++. |.+..|.|. .+.+.++++.. ++++.. +-.+. .+..+.+.+
T Consensus 659 ~~~~~~~gv~i~gv~~~~G~p~----------------~e~~~~~l~~~----gi~~i~-~v~~~------~~a~~~v~~ 711 (2060)
T 2uva_G 659 LGRLRADGVPIEGLTIGAGVPS----------------IEVANEYIQTL----GIRHIS-FKPGS------VDAIQQVIN 711 (2060)
T ss_dssp HHHHHTTTCCEEEEEEESSCCC----------------HHHHHHHHHHS----CCSEEE-ECCCS------HHHHHHHHH
T ss_pred HHHHHHcCCCcceEeecCCCCC----------------HHHHHHHHHHc----CCeEEE-ecCCH------HHHHHHHHH
Confidence 77888889988 888776663 22334444432 566653 22222 122222222
Q ss_pred HhhcCCccEEE---EccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHH-----------
Q 017176 161 VSSLSPTRHFI---IHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL----------- 226 (376)
Q Consensus 161 ~~e~~Gvd~I~---vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l----------- 226 (376)
+.++|+|.|+ +.|... +|+.+. ..........+.++++.. ++|||+.|||.|++++.+++
T Consensus 712 -l~~aG~D~iV~~q~~G~ea--GGH~g~--~d~~~~~l~lv~~i~~~~-~ipviaaGGI~~g~~i~aaltg~ws~~~g~p 785 (2060)
T 2uva_G 712 -IAKANPTFPIILQWTGGRG--GGHHSF--EDFHQPILLMYSRIRKCS-NIVLVAGSGFGGSEDTYPYLTGSWSTKFGYP 785 (2060)
T ss_dssp -HHHHCTTSCEEEEECCTTS--SSSCCS--CCSHHHHHHHHHHHHTST-TEEEEEESSCCSHHHHHHHHHTCGGGTTTSC
T ss_pred -HHHcCCCEEEEeeeEcccC--CCCCCc--ccccchHHHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHhcCcchhhcCCC
Confidence 3468999999 777553 232221 111122356777877754 89999999999999999999
Q ss_pred HcCcCeeEEchHHhhCCch
Q 017176 227 RKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 227 ~~Gad~VmiGRa~l~~P~l 245 (376)
..|||+||+|+.++....-
T Consensus 786 alGAdgV~~GT~f~~t~Ea 804 (2060)
T 2uva_G 786 PMPFDGCMFGSRMMTAKEA 804 (2060)
T ss_dssp CCCCSCEEESGGGGGBTTS
T ss_pred CCCCCEEEEchhhhcCcCC
Confidence 8899999999999988664
|
| >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A | Back alignment and structure |
|---|
Probab=99.16 E-value=3.3e-10 Score=105.97 Aligned_cols=198 Identities=13% Similarity=0.093 Sum_probs=122.9
Q ss_pred ecCCcEEEccCCCCChHH-HHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCC-----H--H
Q 017176 6 YLPPWFSVAPMMDWTDNH-YRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN-----L--D 77 (376)
Q Consensus 6 ~l~nri~lAPM~~~td~~-~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~-----~--~ 77 (376)
.+.++++++||.+..+.. +...+.+.| +..+++.. +...... +......|+++|+.+.. + +
T Consensus 31 ~id~~~~l~p~~~~~~~~~~~~~~~~~g-~~~i~~~~----~~~~~~~------~~~~~~~~~~v~~~~~~~~~~d~~~~ 99 (273)
T 2qjg_A 31 PMDHGVSNGPIKGLIDIRKTVNDVAEGG-ANAVLLHK----GIVRHGH------RGYGKDVGLIIHLSGGTAISPNPLKK 99 (273)
T ss_dssp ECCHHHHHCSCTTSSSHHHHHHHHHHHT-CSEEEECH----HHHHSCC------CSSSCCCEEEEECEECCTTSSSTTCC
T ss_pred EcccccccCCCcchhhHHHHHHHHHhcC-CCEEEeCH----HHHHHHH------HhhcCCCCEEEEEcCCCcCCCCcccc
Confidence 356677789999988875 333445666 56555432 1111110 11123568899987544 1 1
Q ss_pred HHHHHHHHHHHCCCCEE--EecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC-CCC--CCccHH
Q 017176 78 NLAKATELANAYNYDEI--NLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI-GVD--DHDSYN 152 (376)
Q Consensus 78 ~~~~aa~~~~~~G~d~I--eiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~-g~~--~~~~~~ 152 (376)
.+.+.++.+.++|+|.| .+|.+|+.. ..+ .+.+.++++..++ .++|+.+.+-. |+. +..+..
T Consensus 100 ~~~~~v~~a~~~Ga~~v~~~l~~~~~~~---------~~~---~~~~~~v~~~~~~-~g~~viv~~~~~G~~l~~~~~~~ 166 (273)
T 2qjg_A 100 VIVTTVEEAIRMGADAVSIHVNVGSDED---------WEA---YRDLGMIAETCEY-WGMPLIAMMYPRGKHIQNERDPE 166 (273)
T ss_dssp EECSCHHHHHHTTCSEEEEEEEETSTTH---------HHH---HHHHHHHHHHHHH-HTCCEEEEEEECSTTCSCTTCHH
T ss_pred hHHHHHHHHHHcCCCEEEEEEecCCCCH---------HHH---HHHHHHHHHHHHH-cCCCEEEEeCCCCcccCCCCCHh
Confidence 22456677788999999 777776521 111 1344455555442 47888887521 221 001122
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCC--HHHH----HHHH
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT--VDEV----NAAL 226 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s--~~da----~~~l 226 (376)
+ +..+++.+++.|+|+|.++.. ..++.+.++++.. ++||++.|||.+ .+|+ .+++
T Consensus 167 ~-~~~~a~~a~~~Gad~i~~~~~-----------------~~~~~l~~i~~~~-~ipvva~GGi~~~~~~~~~~~~~~~~ 227 (273)
T 2qjg_A 167 L-VAHAARLGAELGADIVKTSYT-----------------GDIDSFRDVVKGC-PAPVVVAGGPKTNTDEEFLQMIKDAM 227 (273)
T ss_dssp H-HHHHHHHHHHTTCSEEEECCC-----------------SSHHHHHHHHHHC-SSCEEEECCSCCSSHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHcCCCEEEECCC-----------------CCHHHHHHHHHhC-CCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2 222334556899999998831 1277888887765 899999999994 8884 4445
Q ss_pred HcCcCeeEEchHHhhCCchh
Q 017176 227 RKGAHHVMVGRAAYQNPWYT 246 (376)
Q Consensus 227 ~~Gad~VmiGRa~l~~P~lf 246 (376)
+.||++|++||+++..||.+
T Consensus 228 ~~Ga~gv~vg~~i~~~~~~~ 247 (273)
T 2qjg_A 228 EAGAAGVAVGRNIFQHDDVV 247 (273)
T ss_dssp HHTCSEEECCHHHHTSSSHH
T ss_pred HcCCcEEEeeHHhhCCCCHH
Confidence 68999999999999999863
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=99.15 E-value=4.5e-10 Score=103.16 Aligned_cols=146 Identities=17% Similarity=0.188 Sum_probs=99.4
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccE---E
Q 017176 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPV---S 138 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv---~ 138 (376)
+.|+++.=+-.++++..+ +.+.|+|+|-+ |..++.+|+.+.++ +...+.+ ++.+ .
T Consensus 73 ~ipvi~~Ggi~~~~~~~~----~~~~Gad~V~l---------------g~~~l~~p~~~~~~-~~~g~~i~~~~d~~~~~ 132 (241)
T 1qo2_A 73 AEHIQIGGGIRSLDYAEK----LRKLGYRRQIV---------------SSKVLEDPSFLKSL-REIDVEPVFSLDTRGGR 132 (241)
T ss_dssp GGGEEEESSCCSHHHHHH----HHHTTCCEEEE---------------CHHHHHCTTHHHHH-HTTTCEEEEEEEEETTE
T ss_pred CCcEEEECCCCCHHHHHH----HHHCCCCEEEE---------------CchHhhChHHHHHH-HHcCCcEEEEEEecCCE
Confidence 456655433345553333 44478888833 66667788888887 6654222 2222 4
Q ss_pred EEecCCCCCCc--cHHHHHHHHHHHhhcCCccEEEEccCccc--cCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEec
Q 017176 139 VKCRIGVDDHD--SYNQLCDFIYKVSSLSPTRHFIIHSRKAL--LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 214 (376)
Q Consensus 139 vKiR~g~~~~~--~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~--~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nG 214 (376)
|++ .||.+.. +..+.+ +.+++.|++.|.+|+++.. ..| .+++.+.++++.. ++|||++|
T Consensus 133 v~~-~g~~~~~~~~~~e~~----~~~~~~G~~~i~~t~~~~~g~~~g-----------~~~~~i~~l~~~~-~iPvia~G 195 (241)
T 1qo2_A 133 VAF-KGWLAEEEIDPVSLL----KRLKEYGLEEIVHTEIEKDGTLQE-----------HDFSLTKKIAIEA-EVKVLAAG 195 (241)
T ss_dssp ECC-TTCSSCSCCCHHHHH----HHHHTTTCCEEEEEETTHHHHTCC-----------CCHHHHHHHHHHH-TCEEEEES
T ss_pred EEE-CCceecCCCCHHHHH----HHHHhCCCCEEEEEeecccccCCc-----------CCHHHHHHHHHhc-CCcEEEEC
Confidence 445 3676532 344443 2345799999999987542 122 1388888888765 89999999
Q ss_pred CCCCHHHHHHHHHc-----C-cCeeEEchHHhhCCchh
Q 017176 215 GINTVDEVNAALRK-----G-AHHVMVGRAAYQNPWYT 246 (376)
Q Consensus 215 gI~s~~da~~~l~~-----G-ad~VmiGRa~l~~P~lf 246 (376)
||.+++|+.++++. | ||+|++||+++..+.-+
T Consensus 196 GI~~~~d~~~~~~~~~~~~G~adgv~vgsal~~~~~~~ 233 (241)
T 1qo2_A 196 GISSENSLKTAQKVHTETNGLLKGVIVGRAFLEGILTV 233 (241)
T ss_dssp SCCSHHHHHHHHHHHHHTTTSEEEEEECHHHHTTSSCH
T ss_pred CCCCHHHHHHHHhcccccCCeEeEEEeeHHHHcCCCCH
Confidence 99999999999985 9 99999999999998753
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=99.11 E-value=4.7e-10 Score=102.50 Aligned_cols=105 Identities=11% Similarity=0.118 Sum_probs=73.7
Q ss_pred HHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEE--EEccCccccCCCCCCCCCCCCcccHHHH
Q 017176 122 VGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHF--IIHSRKALLNGISPAENRTIPPLKYEYY 198 (376)
Q Consensus 122 ~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I--~vh~r~~~~~g~~~~~~~~~~~~~~~~v 198 (376)
+.++++.+++.. +.++.+.++ +.++. ..+.+.|+|+| ++++.+....+. ...+++.+
T Consensus 120 ~~~~i~~i~~~~~~~~v~~~~~-------t~~ea-----~~a~~~Gad~i~~~v~g~~~~~~~~--------~~~~~~~i 179 (234)
T 1yxy_A 120 IASFIRQVKEKYPNQLLMADIS-------TFDEG-----LVAHQAGIDFVGTTLSGYTPYSRQE--------AGPDVALI 179 (234)
T ss_dssp HHHHHHHHHHHCTTCEEEEECS-------SHHHH-----HHHHHTTCSEEECTTTTSSTTSCCS--------SSCCHHHH
T ss_pred HHHHHHHHHHhCCCCeEEEeCC-------CHHHH-----HHHHHcCCCEEeeeccccCCCCcCC--------CCCCHHHH
Confidence 456777777655 566666433 23332 22346999999 777764311111 12347778
Q ss_pred HHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchhhHh
Q 017176 199 YALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGH 249 (376)
Q Consensus 199 ~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~ 249 (376)
+++++. ++||+++|||.|++++.++++.|||+|++||+++. |+...+.
T Consensus 180 ~~~~~~--~ipvia~GGI~s~~~~~~~~~~Gad~v~vGsal~~-p~~~~~~ 227 (234)
T 1yxy_A 180 EALCKA--GIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAITR-PKEIAER 227 (234)
T ss_dssp HHHHHT--TCCEEEESCCCSHHHHHHHHTTCCSEEEECHHHHC-HHHHHHH
T ss_pred HHHHhC--CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHHhC-hHHHHHH
Confidence 888765 89999999999999999999999999999999887 7654433
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=2.2e-09 Score=98.36 Aligned_cols=149 Identities=13% Similarity=0.121 Sum_probs=103.5
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhc-----ccCc---
Q 017176 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-----NTNV--- 135 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~-----~~~~--- 135 (376)
+.|+++..+-.+++++ +.+.++|+|+|.++. .++.+|+.+.++.+.... .++.
T Consensus 77 ~ipvi~~g~i~~~~~~----~~~~~~Gad~V~i~~---------------~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~ 137 (253)
T 1h5y_A 77 SIPVLVGGGVRSLEDA----TTLFRAGADKVSVNT---------------AAVRNPQLVALLAREFGSQSTVVAIDAKWN 137 (253)
T ss_dssp SSCEEEESSCCSHHHH----HHHHHHTCSEEEESH---------------HHHHCTHHHHHHHHHHCGGGEEEEEEEEEC
T ss_pred CCCEEEECCCCCHHHH----HHHHHcCCCEEEECh---------------HHhhCcHHHHHHHHHcCCCcEEEEEEeecC
Confidence 5788877666777654 344457999999862 234567777777776532 1122
Q ss_pred --cEEEEecCCCCCC-ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE
Q 017176 136 --PVSVKCRIGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL 212 (376)
Q Consensus 136 --pv~vKiR~g~~~~-~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~ 212 (376)
++.|+++.++.+. .+..+.++ .+.+.|+|.|.+|+++....+. ...++.+.++++.. ++||++
T Consensus 138 ~g~~~v~~~~~~~~~~~~~~e~~~----~~~~~G~d~i~~~~~~~~g~~~---------~~~~~~i~~l~~~~-~~pvia 203 (253)
T 1h5y_A 138 GEYYEVYVKGGREATGLDAVKWAK----EVEELGAGEILLTSIDRDGTGL---------GYDVELIRRVADSV-RIPVIA 203 (253)
T ss_dssp SSSEEEEETTTTEEEEEEHHHHHH----HHHHHTCSEEEEEETTTTTTCS---------CCCHHHHHHHHHHC-SSCEEE
T ss_pred CCcEEEEEeCCeecCCCCHHHHHH----HHHhCCCCEEEEecccCCCCcC---------cCCHHHHHHHHHhc-CCCEEE
Confidence 1578888765332 13333332 3346899999999876421110 11377888887764 899999
Q ss_pred ecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 213 NGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 213 nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
+|||.+++++.++++.|||+|++||+++.+++-
T Consensus 204 ~GGi~~~~~~~~~~~~Ga~~v~vgsal~~~~~~ 236 (253)
T 1h5y_A 204 SGGAGRVEHFYEAAAAGADAVLAASLFHFRVLS 236 (253)
T ss_dssp ESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSC
T ss_pred eCCCCCHHHHHHHHHcCCcHHHHHHHHHcCCCC
Confidence 999999999999999999999999999988764
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.5e-09 Score=100.96 Aligned_cols=151 Identities=11% Similarity=0.046 Sum_probs=92.0
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCcccccc-C--CHHHHHHHHHHHh---cc--cC
Q 017176 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLM-L--DPKFVGEAMSVIA---AN--TN 134 (376)
Q Consensus 63 ~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~-~--~~~~~~eiv~~v~---~~--~~ 134 (376)
.+.|+++.=+-++++++.++ .+.|+|+|-+. ..++ . +++.+.++++... +. ++
T Consensus 73 ~~iPvi~~ggi~~~~~i~~~----~~~Gad~v~lg---------------~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~ 133 (266)
T 2w6r_A 73 TTLPIIASGGAGKMEHFLEA----FLAGADKALAA---------------SVFHFREIDMRELKEYLKKHGGSGQAVVVA 133 (266)
T ss_dssp CCSCEEEESCCCSTHHHHHH----HHHTCSEEECC---------------CCC------CHHHHHHCC----CCCEEEEE
T ss_pred cCCCEEEECCCCCHHHHHHH----HHcCCcHhhhh---------------HHHHhCCCCHHHHHHHHHHcCCCCCEEEEE
Confidence 36788776444566664433 34689988663 2223 2 6677777766554 12 22
Q ss_pred ccE-------EEEecCCCCCC--ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC
Q 017176 135 VPV-------SVKCRIGVDDH--DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF 205 (376)
Q Consensus 135 ~pv-------~vKiR~g~~~~--~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~ 205 (376)
+++ .|+++ ||.+. .+..+.++ .+++.|++.|.+|+++.. |.. ...+++.+.++++.
T Consensus 134 ~d~~~~~g~~~v~~~-g~~~~~~~~~~e~~~----~~~~~G~~~i~~t~~~~~--g~~-------~g~~~~~i~~l~~~- 198 (266)
T 2w6r_A 134 IDAKRVDGEFMVFTH-SGKKNTGILLRDWVV----EVEKRGAGEILLTSIDRD--GTK-------SGYDTEMIRFVRPL- 198 (266)
T ss_dssp EEEEEETTEEEEEET-TTTEEEEEEHHHHHH----HHHHTTCSEEEEEETTTT--TTC-------SCCCHHHHHHHGGG-
T ss_pred EEEEecCCCEEEEEC-CCceecchhHHHHHH----HHHHcCCCEEEEEeecCC--CCc-------CCCCHHHHHHHHHH-
Confidence 332 45554 56542 12334332 345789999999876532 110 01137888888776
Q ss_pred CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchhh
Q 017176 206 PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247 (376)
Q Consensus 206 ~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~ 247 (376)
+++|||++|||.+++|+.+++++|||+|++|++++.+||.+.
T Consensus 199 ~~ipvia~GGI~~~ed~~~~~~~Gadgv~vgsal~~~~~~~~ 240 (266)
T 2w6r_A 199 TTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDMR 240 (266)
T ss_dssp CCSCEEEESCCCSHHHHHHHHHHTCSEEEESTTTC-------
T ss_pred cCCCEEEeCCCCCHHHHHHHHHcCCHHHHccHHHHcCCCCHH
Confidence 499999999999999999999999999999999999998753
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A | Back alignment and structure |
|---|
Probab=99.09 E-value=7.4e-10 Score=105.45 Aligned_cols=151 Identities=21% Similarity=0.245 Sum_probs=92.6
Q ss_pred HHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCC------------
Q 017176 81 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH------------ 148 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~------------ 148 (376)
+.|+.+.++|+|+|.+. ||.+...+... |..++++++.+.++. +.+++|+.+|+|+|+.+.
T Consensus 32 ~~a~~~~~~Ga~~I~~l--~p~~~~~~~~~-G~~~~~~~~~i~~I~----~~~~iPv~~k~r~g~~~~~~~~~a~GAd~V 104 (305)
T 2nv1_A 32 EQAKIAEEAGAVAVMAL--ERVPADIRAAG-GVARMADPTIVEEVM----NAVSIPVMAKARIGHIVEARVLEAMGVDYI 104 (305)
T ss_dssp HHHHHHHHTTCSEEEEC--CC-------CC-CCCCCCCHHHHHHHH----HHCSSCEEEEECTTCHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHcCCCEEEEc--CCCcchhhhcc-CcccCCCHHHHHHHH----HhCCCCEEecccccchHHHHHHHHCCCCEE
Confidence 56777888999999544 26554444333 666888887776664 446799999999854100
Q ss_pred ----------------------------ccHHHHHHHHHHHhhcCCccEEEEccCccc-------------------cCC
Q 017176 149 ----------------------------DSYNQLCDFIYKVSSLSPTRHFIIHSRKAL-------------------LNG 181 (376)
Q Consensus 149 ----------------------------~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~-------------------~~g 181 (376)
.+.++. .+.. +.|+|+|.++|.... ..|
T Consensus 105 ~~~~~l~~~~~~~~i~~~~~g~~v~~~~~~~~e~----~~a~-~~Gad~V~~~G~~g~g~~~~~~~h~rt~~~~i~~l~g 179 (305)
T 2nv1_A 105 DESEVLTPADEEFHLNKNEYTVPFVCGCRDLGEA----TRRI-AEGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVA 179 (305)
T ss_dssp EECTTSCCSCSSCCCCGGGCSSCEEEEESSHHHH----HHHH-HTTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHHH
T ss_pred EEeccCCHHHHHHHHHHhccCCcEEEEeCCHHHH----HHHH-HCCCCEEEeccccCccchHHHHhhhhhhhccchhhcc
Confidence 011121 1122 467777777642100 000
Q ss_pred CCCCCCCC---CCcccHHHHHHHHhhCCCCeEE--EecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017176 182 ISPAENRT---IPPLKYEYYYALLRDFPDLTFT--LNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 182 ~~~~~~~~---~~~~~~~~v~~~~~~~~~ipVi--~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
....+... ..+..++.+.++.+. .++||+ ++|||.|++|+.++++.|||+|++||+++..+.
T Consensus 180 i~~~~~~~~~~~~~~~~~~i~~i~~~-~~iPvi~~a~GGI~~~~d~~~~~~~GadgV~vGsai~~~~~ 246 (305)
T 2nv1_A 180 MSEDELMTEAKNLGAPYELLLQIKKD-GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSDN 246 (305)
T ss_dssp SCGGGHHHHHHHHTCCHHHHHHHHHH-TSCSSCEEBCSCCCSHHHHHHHHHTTCSCEEECGGGGGSSC
T ss_pred ccchhhhcccccccccHHHHHHHHHh-cCCCEEEEeccCCCCHHHHHHHHHcCCCEEEEcHHHHcCCC
Confidence 00000000 012346778887765 489999 999999999999999999999999999997543
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=3.6e-09 Score=97.53 Aligned_cols=151 Identities=11% Similarity=0.078 Sum_probs=103.4
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhc-c--cCccE--
Q 017176 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-N--TNVPV-- 137 (376)
Q Consensus 63 ~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~-~--~~~pv-- 137 (376)
.+.|+++.=+-+++++. +.+.++|+|+|-+ |..++.+|+.+.++.+.... . +++++
T Consensus 74 ~~iPvi~~Ggi~~~~~~----~~~~~~Gad~V~l---------------g~~~l~~p~~~~~~~~~~~~~~i~~~~~~~~ 134 (252)
T 1ka9_F 74 VFIPLTVGGGVRSLEDA----RKLLLSGADKVSV---------------NSAAVRRPELIRELADHFGAQAVVLAIDARW 134 (252)
T ss_dssp CCSCEEEESSCCSHHHH----HHHHHHTCSEEEE---------------CHHHHHCTHHHHHHHHHHCGGGEEEEEEEEE
T ss_pred CCCCEEEECCcCCHHHH----HHHHHcCCCEEEE---------------ChHHHhCcHHHHHHHHHcCCCcEEEEEEEec
Confidence 46788776444566543 3334468898855 55666778888888887642 1 22222
Q ss_pred -----EEEecCCCCCC--ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeE
Q 017176 138 -----SVKCRIGVDDH--DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF 210 (376)
Q Consensus 138 -----~vKiR~g~~~~--~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipV 210 (376)
.|++ -||.+. .+..+.++ .+++.|++.|.+|+++.. |.. ...+++.+.++++.. ++||
T Consensus 135 ~~g~~~v~~-~g~~~~~~~~~~e~~~----~~~~~G~~~i~~~~~~~~--g~~-------~g~~~~~i~~l~~~~-~ipv 199 (252)
T 1ka9_F 135 RGDFPEVHV-AGGRVPTGLHAVEWAV----KGVELGAGEILLTSMDRD--GTK-------EGYDLRLTRMVAEAV-GVPV 199 (252)
T ss_dssp ETTEEEEEE-TTTTEEEEEEHHHHHH----HHHHHTCCEEEEEETTTT--TTC-------SCCCHHHHHHHHHHC-SSCE
T ss_pred CCCCEEEEE-CCCccccCCcHHHHHH----HHHHcCCCEEEEecccCC--CCc-------CCCCHHHHHHHHHHc-CCCE
Confidence 4555 366652 12333332 334689999999965432 110 011388888888765 8999
Q ss_pred EEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchhh
Q 017176 211 TLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247 (376)
Q Consensus 211 i~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~ 247 (376)
|++|||.+++|+.+++++|||+|++||+++.+||.+.
T Consensus 200 ia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~~~~~ 236 (252)
T 1ka9_F 200 IASGGAGRMEHFLEAFQAGAEAALAASVFHFGEIPIP 236 (252)
T ss_dssp EEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHH
T ss_pred EEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCCCCHH
Confidence 9999999999999999999999999999999998754
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=6.9e-10 Score=112.53 Aligned_cols=141 Identities=17% Similarity=0.145 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHH
Q 017176 77 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLC 155 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~ 155 (376)
+.+.+.++.+.++|+|.|++|++. | .++...++++++++.+ ++||.++.- .+.++.
T Consensus 236 ~~~~~~a~~l~~aGvd~v~i~~~~-----------G-----~~~~~~e~i~~i~~~~p~~pvi~g~~------~t~e~a- 292 (494)
T 1vrd_A 236 PETMERVEKLVKAGVDVIVIDTAH-----------G-----HSRRVIETLEMIKADYPDLPVVAGNV------ATPEGT- 292 (494)
T ss_dssp TTHHHHHHHHHHTTCSEEEECCSC-----------C-----SSHHHHHHHHHHHHHCTTSCEEEEEE------CSHHHH-
T ss_pred HhHHHHHHHHHHhCCCEEEEEecC-----------C-----chHHHHHHHHHHHHHCCCceEEeCCc------CCHHHH-
Confidence 345677888889999999998631 2 2456778899999888 789988521 223332
Q ss_pred HHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHH---HhhCCCCeEEEecCCCCHHHHHHHHHcCcCe
Q 017176 156 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL---LRDFPDLTFTLNGGINTVDEVNAALRKGAHH 232 (376)
Q Consensus 156 ~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~---~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~ 232 (376)
+.+.++|+|+|.|.++.....+....+....+. ...+.++ ++. .++|||++|||.+++|+.++++.|||+
T Consensus 293 ----~~l~~~G~d~I~v~~~~G~~~~~~~~~~~g~p~--~~~l~~v~~~~~~-~~ipvia~GGI~~~~di~kala~GAd~ 365 (494)
T 1vrd_A 293 ----EALIKAGADAVKVGVGPGSICTTRVVAGVGVPQ--LTAVMECSEVARK-YDVPIIADGGIRYSGDIVKALAAGAES 365 (494)
T ss_dssp ----HHHHHTTCSEEEECSSCSTTCHHHHHHCCCCCH--HHHHHHHHHHHHT-TTCCEEEESCCCSHHHHHHHHHTTCSE
T ss_pred ----HHHHHcCCCEEEEcCCCCccccccccCCCCccH--HHHHHHHHHHHhh-cCCCEEEECCcCCHHHHHHHHHcCCCE
Confidence 234579999999943211000000000001111 3333333 333 389999999999999999999999999
Q ss_pred eEEchHHhhCCchhh
Q 017176 233 VMVGRAAYQNPWYTL 247 (376)
Q Consensus 233 VmiGRa~l~~P~lf~ 247 (376)
|++||+++.+|.+..
T Consensus 366 V~iGr~~l~~~e~~~ 380 (494)
T 1vrd_A 366 VMVGSIFAGTEEAPG 380 (494)
T ss_dssp EEESHHHHTBTTSSS
T ss_pred EEECHHHhcCCcCCc
Confidence 999999999998753
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.03 E-value=9.2e-09 Score=100.94 Aligned_cols=142 Identities=10% Similarity=0.102 Sum_probs=112.9
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCC
Q 017176 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGV 145 (376)
Q Consensus 67 ~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~ 145 (376)
+...+.+.+++.|.++|+++.+.||+.|+|++|| +++...+++++||+.+ ++++.++..-+|
T Consensus 139 ~~~~~~~~~~e~~~~~a~~~~~~Gf~~iKik~g~-----------------~~~~~~e~v~avr~a~gd~~l~vD~n~~~ 201 (384)
T 2pgw_A 139 YFYFLQGETAEELARDAAVGHAQGERVFYLKVGR-----------------GEKLDLEITAAVRGEIGDARLRLDANEGW 201 (384)
T ss_dssp BCEECCCSSHHHHHHHHHHHHHTTCCEEEEECCS-----------------CHHHHHHHHHHHHTTSTTCEEEEECTTCC
T ss_pred EEEECCCCCHHHHHHHHHHHHHcCCCEEEECcCC-----------------CHHHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 3334445789999999999999999999998774 5788899999999988 588888887777
Q ss_pred CCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHH
Q 017176 146 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAA 225 (376)
Q Consensus 146 ~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~ 225 (376)
+ .++.+++ .+.+++.|+++|. .. +++.+++..+++++.. ++||++++.+.++++++++
T Consensus 202 ~----~~~a~~~-~~~l~~~~i~~iE----qP------------~~~~~~~~~~~l~~~~-~iPI~~de~i~~~~~~~~~ 259 (384)
T 2pgw_A 202 S----VHDAINM-CRKLEKYDIEFIE----QP------------TVSWSIPAMAHVREKV-GIPIVADQAAFTLYDVYEI 259 (384)
T ss_dssp C----HHHHHHH-HHHHGGGCCSEEE----CC------------SCTTCHHHHHHHHHHC-SSCEEESTTCCSHHHHHHH
T ss_pred C----HHHHHHH-HHHHHhcCCCEEe----CC------------CChhhHHHHHHHHhhC-CCCEEEeCCcCCHHHHHHH
Confidence 5 3455554 4567789999876 10 1223477788887765 8999999999999999999
Q ss_pred HH-cCcCeeEEchHHhhCCchhh
Q 017176 226 LR-KGAHHVMVGRAAYQNPWYTL 247 (376)
Q Consensus 226 l~-~Gad~VmiGRa~l~~P~lf~ 247 (376)
++ ..||+|++..+.++.++-+.
T Consensus 260 i~~~~~d~v~ik~~~~GGit~~~ 282 (384)
T 2pgw_A 260 CRQRAADMICIGPREIGGIQPMM 282 (384)
T ss_dssp HHTTCCSEEEECHHHHTSHHHHH
T ss_pred HHcCCCCEEEEcchhhCCHHHHH
Confidence 98 67999999999888887643
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=6.3e-08 Score=88.50 Aligned_cols=208 Identities=13% Similarity=0.126 Sum_probs=129.4
Q ss_pred CCCeecCCcEEEccCCCCChHHH-HHHHHHhCCCcEEEecceeecccccccchhhhhhcc-CCCCCCEEEEecC-CCHHH
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHY-RTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF-SPEQHPIVLQIGG-SNLDN 78 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~-r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~-~~~~~p~~vQL~g-~~~~~ 78 (376)
|++.++..|+++- -+.+.+... +...++. |+.++..-+=.. .+.. ......+++. .+.+..+..|-.| .+.++
T Consensus 13 i~~~~f~SRl~~G-tgky~~~~~~~~a~~as-g~e~vtva~rR~-~~~~-~~~~~~~~~~i~~~~~~~lpNTag~~ta~e 88 (265)
T 1wv2_A 13 IAGRTYGSRLLVG-TGKYKDLDETRRAIEAS-GAEIVTVAVRRT-NIGQ-NPDEPNLLDVIPPDRYTILPNTAGCYDAVE 88 (265)
T ss_dssp ETTEEESCCEEEC-CSCSSSHHHHHHHHHHS-CCSEEEEEGGGC-CC--------------CTTTSEEEEECTTCCSHHH
T ss_pred ECCEEeecceEEe-cCCCCCHHHHHHHHHHh-CCCeEEEEEEee-cccc-CCCcchHHhhhhhcCCEECCcCCCCCCHHH
Confidence 6788999999885 344666544 4445555 466653333222 1110 1112333332 2335567777766 47899
Q ss_pred HHHHHHHHHH-C-CCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHH
Q 017176 79 LAKATELANA-Y-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 156 (376)
Q Consensus 79 ~~~aa~~~~~-~-G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~ 156 (376)
-+..|+++.+ + |-++|-|-. .... -.++.|+....+..+.+.+. ++.+..-+. ++ ..
T Consensus 89 Av~~a~lare~~~~~~~iKlEv-------~~d~---~~llpD~~~tv~aa~~L~~~-Gf~Vlpy~~---dd---~~---- 147 (265)
T 1wv2_A 89 AVRTCRLARELLDGHNLVKLEV-------LADQ---KTLFPNVVETLKAAEQLVKD-GFDVMVYTS---DD---PI---- 147 (265)
T ss_dssp HHHHHHHHHTTTTSCCEEEECC-------BSCT---TTCCBCHHHHHHHHHHHHTT-TCEEEEEEC---SC---HH----
T ss_pred HHHHHHHHHHHcCCCCeEEEEe-------ecCc---cccCcCHHHHHHHHHHHHHC-CCEEEEEeC---CC---HH----
Confidence 9999999998 5 567887742 2111 23567888777777776543 443332111 22 21
Q ss_pred HHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017176 157 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 157 ~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
+++.+++.|+++|..++..- |.+ ....+++.+..+++. +++|||+.|||.+++|+..+++.|||+|++|
T Consensus 148 -~akrl~~~G~~aVmPlg~pI---GsG------~Gi~~~~lI~~I~e~-~~vPVI~eGGI~TPsDAa~AmeLGAdgVlVg 216 (265)
T 1wv2_A 148 -IARQLAEIGCIAVMPLAGLI---GSG------LGICNPYNLRIILEE-AKVPVLVDAGVGTASDAAIAMELGCEAVLMN 216 (265)
T ss_dssp -HHHHHHHSCCSEEEECSSST---TCC------CCCSCHHHHHHHHHH-CSSCBEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred -HHHHHHHhCCCEEEeCCccC---CCC------CCcCCHHHHHHHHhc-CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 24556789999998877531 111 011247888888875 5999999999999999999999999999999
Q ss_pred hHHhh--CCch
Q 017176 237 RAAYQ--NPWY 245 (376)
Q Consensus 237 Ra~l~--~P~l 245 (376)
+++.. ||..
T Consensus 217 SAI~~a~dP~~ 227 (265)
T 1wv2_A 217 TAIAHAKDPVM 227 (265)
T ss_dssp HHHHTSSSHHH
T ss_pred hHHhCCCCHHH
Confidence 99964 4544
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=99.01 E-value=4.1e-08 Score=89.72 Aligned_cols=76 Identities=17% Similarity=0.015 Sum_probs=57.3
Q ss_pred hhcCCccEEEE--ccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHH
Q 017176 162 SSLSPTRHFII--HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 162 ~e~~Gvd~I~v--h~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~ 239 (376)
+++.|+|+|.+ ++.+...+. ...+++.+.++++. ++|||++|||.|++|+.++++.|||+|++|+++
T Consensus 145 a~~~Gad~Ig~~~~g~t~~~~~---------~~~~~~~i~~l~~~--~ipvIA~GGI~t~~d~~~~~~~GadgV~VGsal 213 (232)
T 3igs_A 145 CQRLGADIIGTTMSGYTTPDTP---------EEPDLPLVKALHDA--GCRVIAEGRYNSPALAAEAIRYGAWAVTVGSAI 213 (232)
T ss_dssp HHHTTCSEEECTTTTSSSSSCC---------SSCCHHHHHHHHHT--TCCEEEESCCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred HHhCCCCEEEEcCccCCCCCCC---------CCCCHHHHHHHHhc--CCcEEEECCCCCHHHHHHHHHcCCCEEEEehHh
Confidence 45789999954 444431110 12248888888764 899999999999999999999999999999777
Q ss_pred hhCCchhhHh
Q 017176 240 YQNPWYTLGH 249 (376)
Q Consensus 240 l~~P~lf~~~ 249 (376)
+ +|+...+.
T Consensus 214 ~-~p~~~~~~ 222 (232)
T 3igs_A 214 T-RLEHICGW 222 (232)
T ss_dssp H-CHHHHHHH
T ss_pred c-CHHHHHHH
Confidence 6 68765443
|
| >3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1.8e-09 Score=99.49 Aligned_cols=98 Identities=15% Similarity=0.073 Sum_probs=73.9
Q ss_pred cEEEEecCCCCCC-ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEec
Q 017176 136 PVSVKCRIGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 214 (376)
Q Consensus 136 pv~vKiR~g~~~~-~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nG 214 (376)
.+.||+|.+++.. .+..++ ++.+++.|+++|+++..+....+. ..+++.+.++++.+ ++||+++|
T Consensus 21 ~~~v~~~~~~~~~~~~~~~~----a~~~~~~G~~~i~v~d~~~~~~~~---------~~~~~~i~~i~~~~-~ipvi~~G 86 (247)
T 3tdn_A 21 EFMVFTYSGKKNTGILLRDW----VVEVEKRGAGEILLTSIDRDGTKS---------GYDTEMIRFVRPLT-TLPIIASG 86 (247)
T ss_dssp EEEEEETTTTEEEEEEHHHH----HHHHHHTTCSEEEEEETTTTTCSS---------CCCHHHHHHHGGGC-CSCEEEES
T ss_pred cEEEEEcCCeecCCCCHHHH----HHHHHHcCCCEEEEEecCcccCCC---------cccHHHHHHHHHhC-CCCEEEeC
Confidence 3678899544321 234444 344568999999998765321111 12378888888765 99999999
Q ss_pred CCCCHHHHHHHHHcCcCeeEEchHHhhCCchhh
Q 017176 215 GINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247 (376)
Q Consensus 215 gI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~ 247 (376)
||.|+++++++++.|||+|++||+++.||+++.
T Consensus 87 gi~~~~~~~~~l~~Gad~V~ig~~~l~dp~~~~ 119 (247)
T 3tdn_A 87 GAGKMEHFLEAFLRGADKVSINTAAVENPSLIT 119 (247)
T ss_dssp CCCSHHHHHHHHHTTCSEECCSHHHHHCTHHHH
T ss_pred CCCCHHHHHHHHHcCCCeeehhhHHhhChHHHH
Confidence 999999999999999999999999999999853
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=98.98 E-value=4.7e-09 Score=95.80 Aligned_cols=128 Identities=13% Similarity=0.062 Sum_probs=88.8
Q ss_pred HHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHh
Q 017176 83 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVS 162 (376)
Q Consensus 83 a~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~ 162 (376)
+..+.++|+|.|-++..+- .+|+.+.++++.+++. +.++.+.+. +.++.. .+
T Consensus 94 i~~~~~aGad~I~l~~~~~---------------~~p~~l~~~i~~~~~~-g~~v~~~v~-------t~eea~-----~a 145 (229)
T 3q58_A 94 VDALAQAGADIIAFDASFR---------------SRPVDIDSLLTRIRLH-GLLAMADCS-------TVNEGI-----SC 145 (229)
T ss_dssp HHHHHHHTCSEEEEECCSS---------------CCSSCHHHHHHHHHHT-TCEEEEECS-------SHHHHH-----HH
T ss_pred HHHHHHcCCCEEEECcccc---------------CChHHHHHHHHHHHHC-CCEEEEecC-------CHHHHH-----HH
Confidence 3446678999998875421 2344567777777653 677776432 344432 24
Q ss_pred hcCCccEEEE--ccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHh
Q 017176 163 SLSPTRHFII--HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240 (376)
Q Consensus 163 e~~Gvd~I~v--h~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l 240 (376)
++.|+|+|.+ |+.+.... .....++.+.++++. ++|||++|||.|++|+.++++.|||+|++|+++.
T Consensus 146 ~~~Gad~Ig~~~~g~t~~~~---------~~~~~~~li~~l~~~--~ipvIA~GGI~t~~d~~~~~~~GadgV~VGsai~ 214 (229)
T 3q58_A 146 HQKGIEFIGTTLSGYTGPIT---------PVEPDLAMVTQLSHA--GCRVIAEGRYNTPALAANAIEHGAWAVTVGSAIT 214 (229)
T ss_dssp HHTTCSEEECTTTTSSSSCC---------CSSCCHHHHHHHHTT--TCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred HhCCCCEEEecCccCCCCCc---------CCCCCHHHHHHHHHc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEchHhc
Confidence 5799999954 55443210 112247888888764 8999999999999999999999999999997665
Q ss_pred hCCchhhHhh
Q 017176 241 QNPWYTLGHV 250 (376)
Q Consensus 241 ~~P~lf~~~~ 250 (376)
+||.+.+.+
T Consensus 215 -~p~~~~~~f 223 (229)
T 3q58_A 215 -RIEHICQWF 223 (229)
T ss_dssp -CHHHHHHHH
T ss_pred -ChHHHHHHH
Confidence 688765443
|
| >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A | Back alignment and structure |
|---|
Probab=98.92 E-value=3.6e-08 Score=91.81 Aligned_cols=205 Identities=13% Similarity=0.079 Sum_probs=114.0
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccC-CCCCCEEEEecC-CCHHHH
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFS-PEQHPIVLQIGG-SNLDNL 79 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~-~~~~p~~vQL~g-~~~~~~ 79 (376)
|++++|+||++++.-..-+-..+.....+. |++++-..+=.++.. ......+++.- ....+++.|..+ .++++.
T Consensus 6 i~~~~~~~~~~~~t~g~p~~~~~~~~l~~~-Gad~ielg~pr~~~~---g~~~~~~~~~l~~~~~~~~pn~~~~~~~~~~ 81 (264)
T 1xm3_A 6 IGGKSFQSRLLLGTGKYPSFDIQKEAVAVS-ESDILTFAVRRMNIF---EASQPNFLEQLDLSKYTLLPNTAGASTAEEA 81 (264)
T ss_dssp ETTEEESCCEEEECSCSSCHHHHHHHHHHH-TCSEEEEETTSSTTC----------CTTCCGGGSEEEEECTTCSSHHHH
T ss_pred ECCEEecCCCEEEecCCCCHHHHHHHHHHc-CCeEEEEcccccccC---CCCHHHHHHHHHhcCCeEcCCccccCCHHHH
Confidence 689999999999954443333444444444 477774333111110 12223333222 224566678876 678877
Q ss_pred HHHHHHHHHC-CCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHHHHHH
Q 017176 80 AKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCD 156 (376)
Q Consensus 80 ~~aa~~~~~~-G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~~~~~ 156 (376)
...++.+.++ |.+.|.++.- |. .. .+..+ ..++++.+++.+ ++.+..-+ .. +.+++
T Consensus 82 ~~f~~~a~~agg~~~i~l~i~-~d------~~---~~~~e---~~~~~~~a~~~~~~g~~vi~~~---~~---~~~~a-- 140 (264)
T 1xm3_A 82 VRIARLAKASGLCDMIKVEVI-GC------SR---SLLPD---PVETLKASEQLLEEGFIVLPYT---SD---DVVLA-- 140 (264)
T ss_dssp HHHHHHHHHTTCCSSEEECCB-CC------TT---TCCBC---HHHHHHHHHHHHHTTCCEEEEE---CS---CHHHH--
T ss_pred HHHHHHHHHcCCCCeEEEeec-CC------Cc---ccccc---hHHHHHHHHHHHCCCeEEEEEc---CC---CHHHH--
Confidence 7777878877 4567776641 11 00 00122 334455554432 33332111 11 22222
Q ss_pred HHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017176 157 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 157 ~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
+.+++.|+|+|...+... |.. ... ..++.+..+++. .++||++-|||.+++|+.++++.|||+|.+|
T Consensus 141 ---~~~~~~gad~v~~~~~~~---Gt~----~~~--~~~~~l~~i~~~-~~iPviv~gGI~t~eda~~~~~~GAdgViVG 207 (264)
T 1xm3_A 141 ---RKLEELGVHAIMPGASPI---GSG----QGI--LNPLNLSFIIEQ-AKVPVIVDAGIGSPKDAAYAMELGADGVLLN 207 (264)
T ss_dssp ---HHHHHHTCSCBEECSSST---TCC----CCC--SCHHHHHHHHHH-CSSCBEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred ---HHHHHhCCCEEEECCccc---CCC----CCC--CCHHHHHHHHhc-CCCCEEEEeCCCCHHHHHHHHHcCCCEEEEc
Confidence 223467899983323221 110 001 125566676664 5999999999999999999999999999999
Q ss_pred hHHhhCCc
Q 017176 237 RAAYQNPW 244 (376)
Q Consensus 237 Ra~l~~P~ 244 (376)
++++..+.
T Consensus 208 SAi~~a~d 215 (264)
T 1xm3_A 208 TAVSGADD 215 (264)
T ss_dssp HHHHTSSS
T ss_pred HHHhCCCC
Confidence 99886554
|
| >1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.5e-08 Score=110.44 Aligned_cols=219 Identities=13% Similarity=0.069 Sum_probs=123.3
Q ss_pred ecCCcEEEccCCCC--Ch---HHHHHHHHHhCCCcEEEecceeeccccc-----ccchh---hhhhccCC--CCCCEEEE
Q 017176 6 YLPPWFSVAPMMDW--TD---NHYRTLARLISKHAWLYTEMLAAETIIY-----QQGNL---DRFLAFSP--EQHPIVLQ 70 (376)
Q Consensus 6 ~l~nri~lAPM~~~--td---~~~r~~~~~~Gg~gl~~te~v~~~~~~~-----~~~~~---~~~~~~~~--~~~p~~vQ 70 (376)
.+..||+++||++. |. ..+...+.+.|+.+.+-....+++.+.. .+.+. ........ .....+.|
T Consensus 865 ~I~~Pfii~aMS~GslS~ea~~aLA~Aas~aGg~~~tGeGg~~pe~~~~eir~~~~~~~~~~p~~~~~~nG~~~~~~I~Q 944 (1520)
T 1ofd_A 865 SIVKRFCTGGMSLGALSREAHETLAIAMNRLGAKSNSGEGGEDVVRYLTLDDVDSEGNSPTLPHLHGLQNGDTANSAIKQ 944 (1520)
T ss_dssp HHHTTEECCCBCTTTSCHHHHHHHHHHHHHHTCBCEECTTCCCGGGGSCCCCCCTTSCCTTSTTCCSCCTTCCCCCSEEE
T ss_pred cccCceEecCcCcccccHHHHHHHHHHHHHcCCceEeCCCCCCHHHHHhhhccccccccccccccccccCcchHHHHHHH
Confidence 46779999999953 32 2455556788876555433343332210 00000 00001111 12346888
Q ss_pred ec----CCCHHHHHHHHHHHHHCCCCEEEecCCC----------CCcccc------CCCCccccc--------cCCHHHH
Q 017176 71 IG----GSNLDNLAKATELANAYNYDEINLNCGC----------PSPKVA------GHGCFGVSL--------MLDPKFV 122 (376)
Q Consensus 71 L~----g~~~~~~~~aa~~~~~~G~d~IeiN~gc----------P~~~v~------r~g~yG~~l--------~~~~~~~ 122 (376)
+. |.+.+. +.. .|.|+|.++- |..++. |.-..|..+ ..+++.+
T Consensus 945 l~sg~FGVn~~~-------l~~--ad~IeIKi~QGAKpG~GG~Lp~~kV~~~iA~~R~~~~Gv~lisP~~~~d~~s~edl 1015 (1520)
T 1ofd_A 945 IASGRFGVTPEY-------LMS--GKQLEIKMAQGAKPGEGGQLPGKKVSEYIAMLRRSKPGVTLISPPPHHDIYSIEDL 1015 (1520)
T ss_dssp ECTTCTTCCHHH-------HHH--CSEEEEECCCTTSTTSCCEECGGGCCHHHHHHHTSCTTCCEECCSSCTTCSSHHHH
T ss_pred hcCCCCccChhh-------ccc--hHHHHHHHhccCCCCCCCCCCHHHHHHHHHHHcCCCCCCCeeCCCCCcCcCCHHHH
Confidence 83 445442 122 5889987631 111111 000112211 1346778
Q ss_pred HHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCC--CCCCCCCcccHHHHH
Q 017176 123 GEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP--AENRTIPPLKYEYYY 199 (376)
Q Consensus 123 ~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~--~~~~~~~~~~~~~v~ 199 (376)
.++++.+++.. ++||.||+-.+.. +.+. ++.+.++|+|+|+|+|.....++... .....++. ...+.
T Consensus 1016 ~~~I~~Lk~~~~~~PV~VKlv~~~g----i~~~----A~~a~kAGAD~IvVsG~eGGTgasp~~~~~~~GlPt--~~aL~ 1085 (1520)
T 1ofd_A 1016 AQLIYDLHQINPEAQVSVKLVAEIG----IGTI----AAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPW--ELGVT 1085 (1520)
T ss_dssp HHHHHHHHHHCTTSEEEEEEECSTT----HHHH----HHHHHHTTCSEEEEECTTCCCSSEEHHHHHHBCCCH--HHHHH
T ss_pred HHHHHHHHHhCCCCCEEEEecCCCC----hHHH----HHHHHHcCCCEEEEeCCCCccCCCcchhhcCCchhH--HHHHH
Confidence 89999999887 8999999876421 1122 33455799999999765421111000 00001111 23344
Q ss_pred HHHhhC------CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017176 200 ALLRDF------PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 200 ~~~~~~------~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
++.+.. .++|||+.|||.|+.|+.+++..|||+|++||++|...
T Consensus 1086 ev~~al~~~glr~~IpVIAdGGIrtG~DVakALaLGAdaV~iGTafL~al 1135 (1520)
T 1ofd_A 1086 EVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAMIAE 1135 (1520)
T ss_dssp HHHHHHHHTTCGGGCEEEEESSCCSHHHHHHHHHTTCSEEECSHHHHHHT
T ss_pred HHHHHHHhcCCCCCceEEEECCCCCHHHHHHHHHcCCCeeEEcHHHHHHH
Confidence 433211 26999999999999999999999999999999998754
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=3.5e-08 Score=99.79 Aligned_cols=132 Identities=15% Similarity=0.101 Sum_probs=86.6
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHH
Q 017176 80 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFI 158 (376)
Q Consensus 80 ~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i 158 (376)
.+.++.+.++|+|.|.++.. . + +.+...+.++.+++.+ ++|+..+ ++. +.+..
T Consensus 235 ~~~a~~l~~~G~d~ivi~~a------~--g--------~~~~~~~~i~~l~~~~p~~pvi~G---~v~---t~~~a---- 288 (491)
T 1zfj_A 235 FERAEALFEAGADAIVIDTA------H--G--------HSAGVLRKIAEIRAHFPNRTLIAG---NIA---TAEGA---- 288 (491)
T ss_dssp HHHHHHHHHHTCSEEEECCS------C--T--------TCHHHHHHHHHHHHHCSSSCEEEE---EEC---SHHHH----
T ss_pred HHHHHHHHHcCCCeEEEeee------c--C--------cchhHHHHHHHHHHHCCCCcEeCC---Ccc---CHHHH----
Confidence 35566677789999988741 1 1 2234567788888877 7888754 222 22222
Q ss_pred HHHhhcCCccEEEEccC------ccccCCCCCCCCCCCCcccHHHHHHHHhh--CCCCeEEEecCCCCHHHHHHHHHcCc
Q 017176 159 YKVSSLSPTRHFIIHSR------KALLNGISPAENRTIPPLKYEYYYALLRD--FPDLTFTLNGGINTVDEVNAALRKGA 230 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r------~~~~~g~~~~~~~~~~~~~~~~v~~~~~~--~~~ipVi~nGgI~s~~da~~~l~~Ga 230 (376)
+.+.++|+|.|.|..+ +....+.. ....+.+.++... ..++|||+.|||.+++|+.++++.||
T Consensus 289 -~~~~~~Gad~I~vg~g~g~~~~tr~~~~~~--------~p~~~~l~~~~~~~~~~~ipvia~GGi~~~~di~kal~~GA 359 (491)
T 1zfj_A 289 -RALYDAGVDVVKVGIGPGSICTTRVVAGVG--------VPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGG 359 (491)
T ss_dssp -HHHHHTTCSEEEECSSCCTTBCHHHHTCCC--------CCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTC
T ss_pred -HHHHHcCCCEEEECccCCcceEEeeecCCC--------CCcHHHHHHHHHHHhhcCCCEEeeCCCCCHHHHHHHHHcCC
Confidence 2234699999998521 11111111 1124555554431 13899999999999999999999999
Q ss_pred CeeEEchHHhhCCchh
Q 017176 231 HHVMVGRAAYQNPWYT 246 (376)
Q Consensus 231 d~VmiGRa~l~~P~lf 246 (376)
|+|++||+++..++..
T Consensus 360 ~~v~vG~~~~~~~e~~ 375 (491)
T 1zfj_A 360 NAVMLGSMFAGTDEAP 375 (491)
T ss_dssp SEEEESTTTTTBSSCC
T ss_pred cceeeCHHhhCCCcCc
Confidence 9999999999876643
|
| >2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* | Back alignment and structure |
|---|
Probab=98.84 E-value=1e-08 Score=117.51 Aligned_cols=202 Identities=10% Similarity=0.036 Sum_probs=129.5
Q ss_pred CCcEEEccCC-CCChHHHHHHHHHhCCCcEEEe-cceeecccccccchhhhhhccCCCCCCEEEEecCCCHHH---HHHH
Q 017176 8 PPWFSVAPMM-DWTDNHYRTLARLISKHAWLYT-EMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDN---LAKA 82 (376)
Q Consensus 8 ~nri~lAPM~-~~td~~~r~~~~~~Gg~gl~~t-e~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~---~~~a 82 (376)
+.||++|||+ ..++..+...+.++||.|.+.. .+.+.+.+-....+..+ ..+.+.|+++++.-.+|.. ..+.
T Consensus 589 ~~PIi~~gM~~~~~~~~lvaAvsnAGglg~l~~~~~~~~e~l~~~I~~~~~---~t~~~~~~gvN~~~~~~~~~~~~~~~ 665 (2051)
T 2uv8_G 589 RPPLLVPGMTPCTVSPDFVAATTNAGYTIELAGGGYFSAAGMTAAIDSVVS---QIEKGSTFGINLIYVNPFMLQWGIPL 665 (2051)
T ss_dssp SCSEEECCCHHHHTCHHHHHHHHHTTCEEEEEGGGCCSHHHHHHHHHHHHH---HSCTTCCEEEEEETTCTTHHHHHHHH
T ss_pred ccceecCCCccccccHHHHHHHHcCCcEEEEccCCCCCHHHHHHHHHHHHH---hcCCCCceEEEEeecChhhhhhhHHH
Confidence 3699999998 4559999999999999888744 33334433222222222 2345689999987655431 1266
Q ss_pred HHHHHHCCCCE--EEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHH
Q 017176 83 TELANAYNYDE--INLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 160 (376)
Q Consensus 83 a~~~~~~G~d~--IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~ 160 (376)
.+.+.+.|+.. |.+..|-|.. +...++++.+ ++++..... | .. ..++. +.
T Consensus 666 ~~~~~~~gv~i~~v~~~ag~p~~----------------~~~~~~i~~l----G~~vi~~~~-~-----~~-~a~~~-~~ 717 (2051)
T 2uv8_G 666 IKELRSKGYPIQFLTIGAGVPSL----------------EVASEYIETL----GLKYLGLKP-G-----SI-DAISQ-VI 717 (2051)
T ss_dssp HHHHHHTTCSEEEEEEESSCCCH----------------HHHHHHHHHS----CCSCEEECC-C-----SH-HHHHH-HH
T ss_pred HHHHHHcCCCcceEEecCCCCch----------------hhHHHHHHHc----CCEEEEecC-c-----hH-HHHHH-HH
Confidence 67777888766 8887776642 2344455544 666544211 1 11 11222 22
Q ss_pred HhhcCCccEE---EEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHH-----------
Q 017176 161 VSSLSPTRHF---IIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL----------- 226 (376)
Q Consensus 161 ~~e~~Gvd~I---~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l----------- 226 (376)
..+++|+|++ .+.|..+ +|+.+. ..+....+..+.++++. ++||||+.|||-|++++..+|
T Consensus 718 ~~~~~g~d~~ii~~~~G~ea--GGH~g~--~d~~~~~l~l~~~v~~~-~~ipviaaGGi~dg~~~~aaL~g~w~~~~g~~ 792 (2051)
T 2uv8_G 718 NIAKAHPNFPIALQWTGGRG--GGHHSF--EDAHTPMLQMYSKIRRH-PNIMLIFGSGFGSADDTYPYLTGEWSTKFDYP 792 (2051)
T ss_dssp HHHHHSTTSCEEEEECCSSC--SEECCS--CCSSHHHHHHHHHHTTC-TTBCCEEESSCCSHHHHTHHHHTCGGGTTTCC
T ss_pred HHHHhCCCceeEEEEEccCc--CCCCCc--ccccccHHHHHHHHHhc-CCceEEEeCCCCCHHHHHHHHccccccccCcc
Confidence 3457899993 4556553 333221 12233334556777665 599999999999999999999
Q ss_pred HcCcCeeEEchHHhhCCch
Q 017176 227 RKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 227 ~~Gad~VmiGRa~l~~P~l 245 (376)
..|||||+||+.++.-...
T Consensus 793 ~lgadGv~~GTrf~~t~Ea 811 (2051)
T 2uv8_G 793 PMPFDGFLFGSRVMIAKEV 811 (2051)
T ss_dssp CCCCSCEECSGGGTTSTTS
T ss_pred CCCCceeeechHHHhCccc
Confidence 6899999999999987664
|
| >1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=4.5e-08 Score=108.23 Aligned_cols=114 Identities=13% Similarity=0.095 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCC---CCCCCCcc
Q 017176 118 DPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA---ENRTIPPL 193 (376)
Q Consensus 118 ~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~---~~~~~~~~ 193 (376)
+++.+.++++.+++.. ++||.||+-.+.. +.+. ++.+.++|+|+|+|+|.....++ ++. ....++
T Consensus 976 s~edl~~~I~~Lk~~~~~~PV~VKlv~~~g----i~~~----A~~a~~AGAD~IvVsG~eGGTga-sp~~~~~~~G~P-- 1044 (1479)
T 1ea0_A 976 SIEDLAQLIYDLKQINPDAKVTVKLVSRSG----IGTI----AAGVAKANADIILISGNSGGTGA-SPQTSIKFAGLP-- 1044 (1479)
T ss_dssp SHHHHHHHHHHHHHHCTTCEEEEEEECCTT----HHHH----HHHHHHTTCSEEEEECTTCCCSS-EETTHHHHSCCC--
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEEEcCCCC----hHHH----HHHHHHcCCcEEEEcCCCCCCCC-CchhhhcCCchh--
Confidence 4677889999999887 8899999876421 1122 33456799999999765421111 000 000111
Q ss_pred cHHHHHHHHhh---C---CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 194 KYEYYYALLRD---F---PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 194 ~~~~v~~~~~~---~---~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
....+.++.+. . .++|||+.|||.|+.|+.+++..|||+|++||++|..
T Consensus 1045 t~~aL~ev~~al~~~glr~~VpVIAdGGIrtG~DVakALaLGAdaV~iGTafL~a 1099 (1479)
T 1ea0_A 1045 WEMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASLIA 1099 (1479)
T ss_dssp HHHHHHHHHHHHHTTTCTTTSEEEEESSCCSHHHHHHHHHTTCSEEECCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCceEEEECCCCCHHHHHHHHHcCCCeeeEcHHHHHH
Confidence 12344444332 1 2799999999999999999999999999999999863
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=98.83 E-value=3.8e-08 Score=92.80 Aligned_cols=202 Identities=12% Similarity=0.078 Sum_probs=130.8
Q ss_pred CCChHHHHHHHHHhCCCcEEEecce--eecccccccc---hhhhhhc----c-CCCCCCEEEEe---cCCCHHHHHHHHH
Q 017176 18 DWTDNHYRTLARLISKHAWLYTEML--AAETIIYQQG---NLDRFLA----F-SPEQHPIVLQI---GGSNLDNLAKATE 84 (376)
Q Consensus 18 ~~td~~~r~~~~~~Gg~gl~~te~v--~~~~~~~~~~---~~~~~~~----~-~~~~~p~~vQL---~g~~~~~~~~aa~ 84 (376)
+.-|.....++.+.| +..+++.-. +...+.+.+. ....++. + ...+.|+++.+ +|.+++...+.++
T Consensus 23 ~a~D~~sA~~~~~aG-~~ai~vs~~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg~~~~~~~~~v~ 101 (295)
T 1xg4_A 23 GTINANHALLAQRAG-YQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGFGSSAFNVARTVK 101 (295)
T ss_dssp ECSSHHHHHHHHHTT-CSCEEECHHHHHHTTTCCCSSSCSCHHHHHHHHHHHHHHCCSCEEEECTTCSSSSHHHHHHHHH
T ss_pred cCcCHHHHHHHHHcC-CCEEEECchHhhhhhcCCCCCCCCCHHHHHHHHHHHHhhCCCCEEecCCcccCCCHHHHHHHHH
Confidence 566888888887776 776665533 2212222221 1111110 0 11346999999 7888999999999
Q ss_pred HHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhc
Q 017176 85 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSL 164 (376)
Q Consensus 85 ~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~ 164 (376)
++.++|+++|.|.-+|.. +++.+.. |..|....+.+..|-.++....+.++.|.-|..-.-...++++++. ++.+++
T Consensus 102 ~l~~aGa~gv~iEd~~~~-k~cgH~~-gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtda~~~~gl~~ai~r-a~ay~e 178 (295)
T 1xg4_A 102 SMIKAGAAGLHIEDQVGA-KRSGHRP-NKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAAIER-AQAYVE 178 (295)
T ss_dssp HHHHHTCSEEEEECBCSS-CCCTTSS-SCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECCHHHHCHHHHHHH-HHHHHH
T ss_pred HHHHcCCeEEEECCCCCC-cccCCCC-CCccCCHHHHHHHHHHHHHhccCCCcEEEEecHHhhhcCHHHHHHH-HHHHHH
Confidence 999999999999999853 3444433 4446655555555555544444667788878631111224566654 456778
Q ss_pred CCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCC--CCHH-HHHHHHHcCcCeeEEchHHhh
Q 017176 165 SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI--NTVD-EVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 165 ~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI--~s~~-da~~~l~~Gad~VmiGRa~l~ 241 (376)
+|+|.|.+|+.. .++.+.++.+.+ ++|+++|.-. .++. ...++-+.|++.|++|.+++.
T Consensus 179 AGAd~i~~e~~~-----------------~~~~~~~i~~~~-~iP~~~N~~~~g~~p~~~~~eL~~~G~~~v~~~~~~~~ 240 (295)
T 1xg4_A 179 AGAEMLFPEAIT-----------------ELAMYRQFADAV-QVPILANITEFGATPLFTTDELRSAHVAMALYPLSAFR 240 (295)
T ss_dssp TTCSEEEETTCC-----------------SHHHHHHHHHHH-CSCBEEECCSSSSSCCCCHHHHHHTTCSEEEESSHHHH
T ss_pred cCCCEEEEeCCC-----------------CHHHHHHHHHHc-CCCEEEEecccCCCCCCCHHHHHHcCCCEEEEChHHHH
Confidence 999999999853 156677777775 7999998765 2332 334444589999999998764
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=98.77 E-value=3.5e-07 Score=91.74 Aligned_cols=131 Identities=17% Similarity=0.192 Sum_probs=85.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQ 153 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~ 153 (376)
.++.+.++.. +.++|+|.|-|... + | +.+.+.+.++.+++.. +++|.+- ++ .+.+.
T Consensus 279 ~~d~~eR~~a-Lv~AGvD~iviD~a--------h---G-----hs~~v~~~i~~ik~~~p~~~viaG---NV---aT~e~ 335 (556)
T 4af0_A 279 RPGDKDRLKL-LAEAGLDVVVLDSS--------Q---G-----NSVYQIEFIKWIKQTYPKIDVIAG---NV---VTREQ 335 (556)
T ss_dssp SHHHHHHHHH-HHHTTCCEEEECCS--------C---C-----CSHHHHHHHHHHHHHCTTSEEEEE---EE---CSHHH
T ss_pred CccHHHHHHH-HHhcCCcEEEEecc--------c---c-----ccHHHHHHHHHHHhhCCcceEEec---cc---cCHHH
Confidence 4555555544 55789999988532 1 2 2356788899998865 5677663 11 22322
Q ss_pred HHHHHHHHhhcCCccEEEEccC------ccccCCCCCCCCCCCCcccHHHHH---HHHhhCCCCeEEEecCCCCHHHHHH
Q 017176 154 LCDFIYKVSSLSPTRHFIIHSR------KALLNGISPAENRTIPPLKYEYYY---ALLRDFPDLTFTLNGGINTVDEVNA 224 (376)
Q Consensus 154 ~~~~i~~~~e~~Gvd~I~vh~r------~~~~~g~~~~~~~~~~~~~~~~v~---~~~~~~~~ipVi~nGgI~s~~da~~ 224 (376)
. + .+.++|+|.|.|--+ |+...|.+ .|+ ...+. +.++++ ++|||+.|||.+.-|+.+
T Consensus 336 a-~----~Li~aGAD~vkVGiGpGSiCtTr~v~GvG------~PQ--~tAi~~~a~~a~~~-~vpvIADGGI~~sGDi~K 401 (556)
T 4af0_A 336 A-A----QLIAAGADGLRIGMGSGSICITQEVMAVG------RPQ--GTAVYAVAEFASRF-GIPCIADGGIGNIGHIAK 401 (556)
T ss_dssp H-H----HHHHHTCSEEEECSSCSTTBCCTTTCCSC------CCH--HHHHHHHHHHHGGG-TCCEEEESCCCSHHHHHH
T ss_pred H-H----HHHHcCCCEEeecCCCCcccccccccCCC------CcH--HHHHHHHHHHHHHc-CCCEEecCCcCcchHHHH
Confidence 2 1 233689999998422 22233322 122 33333 334444 799999999999999999
Q ss_pred HHHcCcCeeEEchHHhhC
Q 017176 225 ALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 225 ~l~~Gad~VmiGRa~l~~ 242 (376)
+|..|||.||+|.-|-+.
T Consensus 402 AlaaGAd~VMlGsllAGt 419 (556)
T 4af0_A 402 ALALGASAVMMGGLLAGT 419 (556)
T ss_dssp HHHTTCSEEEESTTTTTB
T ss_pred HhhcCCCEEEEchhhccc
Confidence 999999999999977654
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=98.74 E-value=3.6e-08 Score=87.99 Aligned_cols=148 Identities=17% Similarity=0.231 Sum_probs=94.7
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEe
Q 017176 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKC 141 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKi 141 (376)
+.|+++.+.+.+++++.+.++.+.+.|++.|++++.||.. .+.++.+|+.+ +.++.+-
T Consensus 9 ~~~~i~~~~~~~~~~~~~~~~~~~~~G~~~iev~~~~~~~-------------------~~~i~~ir~~~~~~~~ig~~- 68 (205)
T 1wa3_A 9 KHKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVPDA-------------------DTVIKELSFLKEKGAIIGAG- 68 (205)
T ss_dssp HHCEEEEECCSSHHHHHHHHHHHHHTTCCEEEEETTSTTH-------------------HHHHHHTHHHHHTTCEEEEE-
T ss_pred hCCEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCChhH-------------------HHHHHHHHHHCCCCcEEEec-
Confidence 4579999999999999999999999999999999877631 23455555543 2333221
Q ss_pred cCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccc-------------cCCC-CCC----------CCCCCC---ccc
Q 017176 142 RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL-------------LNGI-SPA----------ENRTIP---PLK 194 (376)
Q Consensus 142 R~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~-------------~~g~-~~~----------~~~~~~---~~~ 194 (376)
. . .+.++.. .+.+.|+|+| +++.... ..|. ++. +.-.+. ...
T Consensus 69 -~-v---~~~~~~~-----~a~~~Gad~i-v~~~~~~~~~~~~~~~g~~vi~g~~t~~e~~~a~~~Gad~vk~~~~~~~g 137 (205)
T 1wa3_A 69 -T-V---TSVEQCR-----KAVESGAEFI-VSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVG 137 (205)
T ss_dssp -S-C---CSHHHHH-----HHHHHTCSEE-ECSSCCHHHHHHHHHHTCEEECEECSHHHHHHHHHTTCCEEEETTHHHHH
T ss_pred -c-c---CCHHHHH-----HHHHcCCCEE-EcCCCCHHHHHHHHHcCCcEECCcCCHHHHHHHHHcCCCEEEEcCccccC
Confidence 1 0 1222221 1224678887 6544220 0000 000 000000 112
Q ss_pred HHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017176 195 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 195 ~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
.+.++++.+.++++||++.|||. .+++.++++.|||+|.+|++++. +.
T Consensus 138 ~~~~~~l~~~~~~~pvia~GGI~-~~~~~~~~~~Ga~~v~vGs~i~~-~d 185 (205)
T 1wa3_A 138 PQFVKAMKGPFPNVKFVPTGGVN-LDNVCEWFKAGVLAVGVGSALVK-GT 185 (205)
T ss_dssp HHHHHHHHTTCTTCEEEEBSSCC-TTTHHHHHHHTCSCEEECHHHHC-SC
T ss_pred HHHHHHHHHhCCCCcEEEcCCCC-HHHHHHHHHCCCCEEEECccccC-CC
Confidence 45667777666689999999996 78999999999999999999988 55
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A | Back alignment and structure |
|---|
Probab=98.71 E-value=1.4e-07 Score=91.53 Aligned_cols=141 Identities=9% Similarity=0.002 Sum_probs=105.9
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecC
Q 017176 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRI 143 (376)
Q Consensus 66 p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~ 143 (376)
|+-..+...+++++.++|+++.+.||+.|+||+||+ +++...+++++||+.+ ++++.++..-
T Consensus 135 p~~~~~g~~~~~~~~~~a~~~~~~Gf~~iKik~g~~----------------~~~~~~e~v~avr~a~g~~~~l~vDan~ 198 (359)
T 1mdl_A 135 QAYDSHSLDGVKLATERAVTAAELGFRAVKTRIGYP----------------ALDQDLAVVRSIRQAVGDDFGIMVDYNQ 198 (359)
T ss_dssp EEEEECCSCHHHHHHHHHHHHHHTTCSEEEEECCCS----------------SHHHHHHHHHHHHHHHCSSSEEEEECTT
T ss_pred eeeeecCCCCHHHHHHHHHHHHHcCCCEEEEecCCC----------------CHHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 443343225789999999999999999999998772 4577889999999987 6889999888
Q ss_pred CCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHH
Q 017176 144 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 223 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~ 223 (376)
+|+. ++.+++ .+.+++.|+++|. . .+++.+++..+++++.. ++||++++.+.++++++
T Consensus 199 ~~~~----~~a~~~-~~~l~~~~i~~iE--------~--------P~~~~~~~~~~~l~~~~-~iPI~~de~~~~~~~~~ 256 (359)
T 1mdl_A 199 SLDV----PAAIKR-SQALQQEGVTWIE--------E--------PTLQHDYEGHQRIQSKL-NVPVQMGENWLGPEEMF 256 (359)
T ss_dssp CSCH----HHHHHH-HHHHHHHTCSCEE--------C--------CSCTTCHHHHHHHHHTC-SSCEEECTTCCSHHHHH
T ss_pred CCCH----HHHHHH-HHHHHHhCCCeEE--------C--------CCChhhHHHHHHHHHhC-CCCEEeCCCCCCHHHHH
Confidence 8853 344554 3446778998874 0 01223477778887764 89999999999999999
Q ss_pred HHHH-cCcCeeEEchHHhhCCc
Q 017176 224 AALR-KGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 224 ~~l~-~Gad~VmiGRa~l~~P~ 244 (376)
++++ ..||+|++-...++..+
T Consensus 257 ~~i~~~~~d~v~ik~~~~GGi~ 278 (359)
T 1mdl_A 257 KALSIGACRLAMPDAMKIGGVT 278 (359)
T ss_dssp HHHHTTCCSEECCBTTTTTHHH
T ss_pred HHHHcCCCCEEeecchhhCCHH
Confidence 9998 67999998655544433
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=8e-08 Score=90.89 Aligned_cols=163 Identities=17% Similarity=0.176 Sum_probs=96.7
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC
Q 017176 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 143 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~ 143 (376)
..++++.+.. .+.++.+.++|+++|+++.++|... +..+ |..+.+.++. ++++++.+++|+.++.+.
T Consensus 21 ~~~~i~~~~~------~~~a~~~~~~Ga~~i~~~e~v~~~~--~~~~-G~~~~~~~~~----i~~i~~~~~~Pvi~~~~~ 87 (297)
T 2zbt_A 21 KGGVIMDVTT------PEQAVIAEEAGAVAVMALERVPADI--RAQG-GVARMSDPKI----IKEIMAAVSIPVMAKVRI 87 (297)
T ss_dssp TTEEEEEESS------HHHHHHHHHHTCSEEEECSSCHHHH--HHTT-CCCCCCCHHH----HHHHHTTCSSCEEEEEET
T ss_pred hCCeeeeech------HHHHHHHHHCCCcEEEeccccchHH--Hhhc-CCccCCCHHH----HHHHHHhcCCCeEEEecc
Confidence 4467776654 4667777888999999987665431 2222 5456666654 455677778999988776
Q ss_pred CCCCCccHHHH--------------------------------------HHHHHHHhhcCCccEEEEccCccc-------
Q 017176 144 GVDDHDSYNQL--------------------------------------CDFIYKVSSLSPTRHFIIHSRKAL------- 178 (376)
Q Consensus 144 g~~~~~~~~~~--------------------------------------~~~i~~~~e~~Gvd~I~vh~r~~~------- 178 (376)
++. +.++.+ .+...+ +.+.|+|+|.+||....
T Consensus 88 ~~~--~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~i~l~~~v~~~~~~~~-a~~~Gad~I~v~G~~~~g~~~e~~ 164 (297)
T 2zbt_A 88 GHF--VEAMILEAIGVDFIDESEVLTPADEEHHIDKWKFKVPFVCGARNLGEALR-RIAEGAAMIRTKGEAGTGNVVEAV 164 (297)
T ss_dssp TCH--HHHHHHHHTTCSEEEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHH-HHHTTCSEEEECCCSSSCCTHHHH
T ss_pred CCH--HHHHHHHHCCCCEEeeeCCCChHHHHHHHHHhCCCceEEeecCCHHHHHH-HHHcCCCEEEEcccccCcchHHHH
Confidence 531 000000 000011 12345555555532100
Q ss_pred ------------cCCCCCCCC---CCCCcccHHHHHHHHhhCCCCeEE--EecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017176 179 ------------LNGISPAEN---RTIPPLKYEYYYALLRDFPDLTFT--LNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 179 ------------~~g~~~~~~---~~~~~~~~~~v~~~~~~~~~ipVi--~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
..|..+... ....+..++.+.++++.. ++||+ +.|||.|++++.++++.|||+|++|++++.
T Consensus 165 ~~~~~~~~~i~~~~g~t~~~~~~~~~~~~~~~~~i~~l~~~~-~~pvi~~a~GGI~~~e~i~~~~~aGadgvvvGsai~~ 243 (297)
T 2zbt_A 165 RHARTMWKEIRYVQSLREDELMAYAKEIGAPFELVKWVHDHG-RLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGIFK 243 (297)
T ss_dssp HHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHS-SCSSCEEBCSSCCSHHHHHHHHHTTCSEEEECGGGGG
T ss_pred hhHHHHHHHHHHcCCcCCCCchhhhhcchhhHHHHHHHHHhc-CCCcEEEeeCCCCCHHHHHHHHHcCCCEEEEchHHhC
Confidence 000000000 000122366777777654 78988 999999999999999999999999999995
Q ss_pred CC
Q 017176 242 NP 243 (376)
Q Consensus 242 ~P 243 (376)
.+
T Consensus 244 ~~ 245 (297)
T 2zbt_A 244 SG 245 (297)
T ss_dssp SS
T ss_pred CC
Confidence 43
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A | Back alignment and structure |
|---|
Probab=98.71 E-value=1.4e-07 Score=91.94 Aligned_cols=133 Identities=12% Similarity=0.060 Sum_probs=105.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 152 (376)
+++++.++|+++.+.||+.|.|++||+ +++...+++++||+.+ ++++.++...+|+. +
T Consensus 146 ~~e~~~~~a~~~~~~Gf~~iKik~g~~----------------~~~~~~e~v~avr~a~G~d~~l~vDan~~~~~----~ 205 (371)
T 2ovl_A 146 PVADLKTQADRFLAGGFRAIKMKVGRP----------------DLKEDVDRVSALREHLGDSFPLMVDANMKWTV----D 205 (371)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEEECCCS----------------SHHHHHHHHHHHHHHHCTTSCEEEECTTCSCH----H
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCC----------------CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCH----H
Confidence 799999999999999999999998873 3567789999999887 68899999888853 3
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcC
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAH 231 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad 231 (376)
+.+++ .+.+++.|+++|. . .+++.+++..+++++.. ++||++++.+.++++++++++ ..||
T Consensus 206 ~a~~~-~~~l~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~iPI~~dE~~~~~~~~~~~i~~~~~d 267 (371)
T 2ovl_A 206 GAIRA-ARALAPFDLHWIE----E------------PTIPDDLVGNARIVRES-GHTIAGGENLHTLYDFHNAVRAGSLT 267 (371)
T ss_dssp HHHHH-HHHHGGGCCSEEE----C------------CSCTTCHHHHHHHHHHH-CSCEEECTTCCSHHHHHHHHHHTCCS
T ss_pred HHHHH-HHHHHhcCCCEEE----C------------CCCcccHHHHHHHHhhC-CCCEEeCCCCCCHHHHHHHHHcCCCC
Confidence 45554 3456789999874 1 01223477777877764 899999999999999999998 6799
Q ss_pred eeEEchHHhhCCch
Q 017176 232 HVMVGRAAYQNPWY 245 (376)
Q Consensus 232 ~VmiGRa~l~~P~l 245 (376)
.|++-.+-++.++-
T Consensus 268 ~v~ik~~~~GGi~~ 281 (371)
T 2ovl_A 268 LPEPDVSNIGGYTT 281 (371)
T ss_dssp EECCCTTTTTSHHH
T ss_pred EEeeCccccCCHHH
Confidence 99997766666554
|
| >2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=2.3e-07 Score=91.75 Aligned_cols=139 Identities=14% Similarity=0.071 Sum_probs=105.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecC------CCCCccccCCCCcccccc-CCHHHHHHHHHHHhccc--CccEEEEecCCC
Q 017176 75 NLDNLAKATELANAYNYDEINLNC------GCPSPKVAGHGCFGVSLM-LDPKFVGEAMSVIAANT--NVPVSVKCRIGV 145 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~------gcP~~~v~r~g~yG~~l~-~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~ 145 (376)
++++|.++|+++.+.||+.|.|+. |++......+..||++.. ++++...+++++||+.+ ++++.+...-+|
T Consensus 150 ~~~~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~~~~~~~~~GG~~~~~~~~~~~e~v~avR~a~G~d~~l~vDan~~~ 229 (410)
T 2gl5_A 150 TPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMGEARIAAMREAMGDDADIIVEIHSLL 229 (410)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECSSSBCTTSCBTTTSSCCGGGGSCCCHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccccCCcccccccccccccccCccchhHHHHHHHHHHHHHHhcCCCCEEEEECCCCC
Confidence 899999999999999999999996 652110011225788775 57889999999999987 578888877666
Q ss_pred CCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHH
Q 017176 146 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAA 225 (376)
Q Consensus 146 ~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~ 225 (376)
+ .++.++++ +.+++.|+++|.- .+++.+++..+++++.. ++||++.+.+.++++++++
T Consensus 230 ~----~~~ai~~~-~~l~~~~i~~iE~----------------P~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~ 287 (410)
T 2gl5_A 230 G----TNSAIQFA-KAIEKYRIFLYEE----------------PIHPLNSDNMQKVSRST-TIPIATGERSYTRWGYREL 287 (410)
T ss_dssp C----HHHHHHHH-HHHGGGCEEEEEC----------------SSCSSCHHHHHHHHHHC-SSCEEECTTCCTTHHHHHH
T ss_pred C----HHHHHHHH-HHHHhcCCCeEEC----------------CCChhhHHHHHHHHhhC-CCCEEecCCcCCHHHHHHH
Confidence 4 34555554 4567889988751 01223477778887765 8999999999999999999
Q ss_pred HH-cCcCeeEE
Q 017176 226 LR-KGAHHVMV 235 (376)
Q Consensus 226 l~-~Gad~Vmi 235 (376)
++ ..||.|++
T Consensus 288 i~~~~~d~v~i 298 (410)
T 2gl5_A 288 LEKQSIAVAQP 298 (410)
T ss_dssp HHTTCCSEECC
T ss_pred HHcCCCCEEec
Confidence 98 56899887
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.8e-08 Score=92.41 Aligned_cols=97 Identities=10% Similarity=0.084 Sum_probs=73.0
Q ss_pred EEEEecCCCCCCc-----cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEE
Q 017176 137 VSVKCRIGVDDHD-----SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 211 (376)
Q Consensus 137 v~vKiR~g~~~~~-----~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi 211 (376)
..||++.||.+.. +..++ ++.+++.|+|.|++|..+....+. ..+++.+++++ . .++||+
T Consensus 13 ~~vk~~~G~~~~~~~~~~~~~~~----a~~~~~~Gad~i~v~d~~~~~~~~---------~~~~~~i~~i~-~-~~ipvi 77 (241)
T 1qo2_A 13 KVARMIKGRKENTIFYEKDPVEL----VEKLIEEGFTLIHVVDLSNAIENS---------GENLPVLEKLS-E-FAEHIQ 77 (241)
T ss_dssp EEEEEGGGCGGGEEEESSCHHHH----HHHHHHTTCCCEEEEEHHHHHHCC---------CTTHHHHHHGG-G-GGGGEE
T ss_pred EEEEEeccccccceecCcCHHHH----HHHHHHcCCCEEEEecccccccCC---------chhHHHHHHHH-h-cCCcEE
Confidence 5788998886532 23333 344567999999998754321111 12367777776 5 489999
Q ss_pred EecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchhhH
Q 017176 212 LNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLG 248 (376)
Q Consensus 212 ~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~ 248 (376)
++|||.+.+++.++++.|||+|++|++++.||+++.+
T Consensus 78 ~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~~p~~~~~ 114 (241)
T 1qo2_A 78 IGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKS 114 (241)
T ss_dssp EESSCCSHHHHHHHHHTTCCEEEECHHHHHCTTHHHH
T ss_pred EECCCCCHHHHHHHHHCCCCEEEECchHhhChHHHHH
Confidence 9999999999999999999999999999999998543
|
| >2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} | Back alignment and structure |
|---|
Probab=98.68 E-value=3.7e-07 Score=89.29 Aligned_cols=130 Identities=9% Similarity=0.018 Sum_probs=103.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccH
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSY 151 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~ 151 (376)
.+++.+.++|+++.+.||+.|+|++|+ +++...+++++||+.+ ++++.++..-||+.
T Consensus 144 ~~~~~~~~~a~~~~~~Gf~~iKik~g~-----------------~~~~~~e~v~avr~a~g~d~~l~vDan~~~~~---- 202 (379)
T 2rdx_A 144 RSEAETRAELARHRAAGYRQFQIKVGA-----------------DWQSDIDRIRACLPLLEPGEKAMADANQGWRV---- 202 (379)
T ss_dssp SCSHHHHHHHHHHHHTTCCEEEEECCS-----------------CHHHHHHHHHHHGGGSCTTCEEEEECTTCSCH----
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeccC-----------------CHHHHHHHHHHHHHhcCCCCEEEEECCCCCCH----
Confidence 678999999999999999999999875 4688899999999988 58899998888753
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCc
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGA 230 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Ga 230 (376)
++.+++ .+.+++.|+ +|. + . ++ +++..+++++.. ++||++++.+.++++++++++ ..|
T Consensus 203 ~~a~~~-~~~l~~~~i-~iE-----~---P--------~~--~~~~~~~l~~~~-~iPI~~de~i~~~~~~~~~i~~~~~ 261 (379)
T 2rdx_A 203 DNAIRL-ARATRDLDY-ILE-----Q---P--------CR--SYEECQQVRRVA-DQPMKLDECVTGLHMAQRIVADRGA 261 (379)
T ss_dssp HHHHHH-HHHTTTSCC-EEE-----C---C--------SS--SHHHHHHHHTTC-CSCEEECTTCCSHHHHHHHHHHTCC
T ss_pred HHHHHH-HHHHHhCCe-EEe-----C---C--------cC--CHHHHHHHHhhC-CCCEEEeCCcCCHHHHHHHHHcCCC
Confidence 455554 455778898 763 0 0 11 477777887764 899999999999999999998 679
Q ss_pred CeeEEchHHhhCCch
Q 017176 231 HHVMVGRAAYQNPWY 245 (376)
Q Consensus 231 d~VmiGRa~l~~P~l 245 (376)
|.|++-.+.++.++-
T Consensus 262 d~v~ik~~~~GGit~ 276 (379)
T 2rdx_A 262 EICCLKISNLGGLSK 276 (379)
T ss_dssp SEEEEETTTTTSHHH
T ss_pred CEEEEeccccCCHHH
Confidence 999997666655543
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=98.68 E-value=1.9e-07 Score=85.80 Aligned_cols=168 Identities=13% Similarity=0.119 Sum_probs=108.4
Q ss_pred CCEEEEecCCCH--HHHHHHHHHHHHCCCCEEEec--CCCCCccccCCCCccc-----ccc--CCHHHHHHHHHHHhccc
Q 017176 65 HPIVLQIGGSNL--DNLAKATELANAYNYDEINLN--CGCPSPKVAGHGCFGV-----SLM--LDPKFVGEAMSVIAANT 133 (376)
Q Consensus 65 ~p~~vQL~g~~~--~~~~~aa~~~~~~G~d~IeiN--~gcP~~~v~r~g~yG~-----~l~--~~~~~~~eiv~~v~~~~ 133 (376)
..++..|...+| +.+.+.++.+++. +|.|+++ ++||... |.+-. +|. .+.....++++++++.+
T Consensus 5 ~~~~~~i~~~~~~~~~~~~~a~~~~~~-ad~iel~~p~sdp~~D----G~~~~~~~~~al~~g~~~~~~~~~i~~i~~~~ 79 (248)
T 1geq_A 5 GSLIPYLTAGDPDKQSTLNFLLALDEY-AGAIELGIPFSDPIAD----GKTIQESHYRALKNGFKLREAFWIVKEFRRHS 79 (248)
T ss_dssp TEEEEEEETTSSCHHHHHHHHHHHGGG-BSCEEEECCCSCCTTS----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTC
T ss_pred ccEEEEEeCCCCCHHHHHHHHHHHHHc-CCEEEECCCCCCCCCC----CHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhC
Confidence 457889988887 6899999999998 9999998 5666531 11100 000 26677889999999988
Q ss_pred CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCcc-----c------cC-----CCCC-------------
Q 017176 134 NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-----L------LN-----GISP------------- 184 (376)
Q Consensus 134 ~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~-----~------~~-----g~~~------------- 184 (376)
++||.+............++.+ . .+.++|+|.|++|.-.. . ++ +.++
T Consensus 80 ~~pv~~~~~~~~~~~~~~~~~~---~-~~~~~Gad~v~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~ 155 (248)
T 1geq_A 80 STPIVLMTYYNPIYRAGVRNFL---A-EAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDM 155 (248)
T ss_dssp CCCEEEEECHHHHHHHCHHHHH---H-HHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHH
T ss_pred CCCEEEEeccchhhhcCHHHHH---H-HHHHCCCCEEEECCCChhhHHHHHHHHHHhCCCeEEEECCCCHHHHHHHHHhc
Confidence 8898876432100000012222 2 23357899888874110 0 00 0000
Q ss_pred CC------------CC--CCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 185 AE------------NR--TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 185 ~~------------~~--~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
.+ .. ...+...+.+.++++.. ++||++.|||++++++.++++.|||+|.+|++++..
T Consensus 156 ~d~~i~~~~~~G~~g~~~~~~~~~~~~i~~l~~~~-~~pi~~~GGI~~~e~i~~~~~~Gad~vivGsai~~~ 226 (248)
T 1geq_A 156 TTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRIC-RNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKI 226 (248)
T ss_dssp CSSEEEEECCC-------CCCHHHHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred CCCeEEEEECCccCCCCCCCChhHHHHHHHHHhhc-CCCEEEEeecCCHHHHHHHHHcCCCEEEEcHHHHhh
Confidence 00 00 01122356777777765 899999999999999999999999999999998765
|
| >1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=7.4e-07 Score=87.16 Aligned_cols=136 Identities=9% Similarity=0.009 Sum_probs=105.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccH
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSY 151 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~ 151 (376)
.+++++.++|+++.+.||+.|.|++|++. || ...+++...+++++||+.+ ++++.++..-+|+ .
T Consensus 148 ~~~e~~~~~a~~~~~~Gf~~iKik~g~~~--------~~--~~~~~~~~~e~v~avr~a~g~d~~l~vDan~~~~----~ 213 (382)
T 1rvk_A 148 ATPEDYGRFAETLVKRGYKGIKLHTWMPP--------VS--WAPDVKMDLKACAAVREAVGPDIRLMIDAFHWYS----R 213 (382)
T ss_dssp SSHHHHHHHHHHHHHHTCSEEEEECCCTT--------ST--TCCCHHHHHHHHHHHHHHHCTTSEEEEECCTTCC----H
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEcCCcCc--------cc--cccchHHHHHHHHHHHHHhCCCCeEEEECCCCCC----H
Confidence 58999999999999999999999998863 22 2348999999999999987 6889998887775 3
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCC-HHHHHHHHH-cC
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT-VDEVNAALR-KG 229 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s-~~da~~~l~-~G 229 (376)
++.+++ .+.+++.|+++|.- .+++.+++..+++++.. ++||++.+.+.+ +++++++++ ..
T Consensus 214 ~~a~~~-~~~l~~~~i~~iE~----------------P~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~~i~~~~ 275 (382)
T 1rvk_A 214 TDALAL-GRGLEKLGFDWIEE----------------PMDEQSLSSYKWLSDNL-DIPVVGPESAAGKHWHRAEWIKAGA 275 (382)
T ss_dssp HHHHHH-HHHHHTTTCSEEEC----------------CSCTTCHHHHHHHHHHC-SSCEEECSSCSSHHHHHHHHHHTTC
T ss_pred HHHHHH-HHHHHhcCCCEEeC----------------CCChhhHHHHHHHHhhC-CCCEEEeCCccCcHHHHHHHHHcCC
Confidence 455554 34667899998751 01223477777887765 899999999999 999999998 56
Q ss_pred cCeeEEchHHhh
Q 017176 230 AHHVMVGRAAYQ 241 (376)
Q Consensus 230 ad~VmiGRa~l~ 241 (376)
||.|++--.-++
T Consensus 276 ~d~v~ik~~~~G 287 (382)
T 1rvk_A 276 CDILRTGVNDVG 287 (382)
T ss_dssp CSEEEECHHHHT
T ss_pred CCEEeeCchhcC
Confidence 999998444433
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=98.65 E-value=6.7e-07 Score=82.96 Aligned_cols=161 Identities=17% Similarity=0.210 Sum_probs=100.8
Q ss_pred CCEEEEecCCCH--HHHHHHHHHHHHCCCCEEEecCCCCCccccCCC-----------CccccccCCHHHHHHHHHHHhc
Q 017176 65 HPIVLQIGGSNL--DNLAKATELANAYNYDEINLNCGCPSPKVAGHG-----------CFGVSLMLDPKFVGEAMSVIAA 131 (376)
Q Consensus 65 ~p~~vQL~g~~~--~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g-----------~yG~~l~~~~~~~~eiv~~v~~ 131 (376)
..+++-|...+| +.+.+.++.+.++|+|.|+++.-++.+. . .| ..| -+++...++++++++
T Consensus 18 ~~~~~~i~~g~~~~~~~~~~~~~l~~~Gad~ielg~p~~dp~-~-dg~~i~~a~~~al~~g----~~~~~~~~~i~~ir~ 91 (262)
T 1rd5_A 18 TAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPY-I-DGPIIQASVARALASG----TTMDAVLEMLREVTP 91 (262)
T ss_dssp CEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCT-T-SCHHHHHHHHHHHTTT----CCHHHHHHHHHHHGG
T ss_pred ceEEEEeeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcc-c-CCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHh
Confidence 346666655555 8889999999999999999986554221 1 11 112 367889999999999
Q ss_pred ccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEcc--------------------------Ccc-----c--
Q 017176 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS--------------------------RKA-----L-- 178 (376)
Q Consensus 132 ~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~--------------------------r~~-----~-- 178 (376)
.+++|+.+-.+.+......++. +.++|+|.+++|. .+. .
T Consensus 92 ~~~~Pv~~m~~~~~~~~~~~~~--------a~~aGadgv~v~d~~~~~~~~~~~~~~~~g~~~i~~~a~~t~~e~~~~~~ 163 (262)
T 1rd5_A 92 ELSCPVVLLSYYKPIMFRSLAK--------MKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEIT 163 (262)
T ss_dssp GCSSCEEEECCSHHHHSCCTHH--------HHHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEECTTSCHHHHHHHH
T ss_pred cCCCCEEEEecCcHHHHHHHHH--------HHHcCCCEEEEcCCChhhHHHHHHHHHHcCCceEEEECCCCCHHHHHHHH
Confidence 8899987743221000000100 1134444444332 110 0
Q ss_pred -----------cCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017176 179 -----------LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 179 -----------~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
..|.++.. ....+...+.+.++++.. ++||++.|||.|++++.++++.|||+|.+|+++..
T Consensus 164 ~~~~g~v~~~s~~G~tG~~-~~~~~~~~~~i~~v~~~~-~~pI~vgGGI~~~e~~~~~~~~GAdgvvVGSai~~ 235 (262)
T 1rd5_A 164 KASEGFVYLVSVNGVTGPR-ANVNPRVESLIQEVKKVT-NKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVR 235 (262)
T ss_dssp HHCCSCEEEECSSCCBCTT-SCBCTHHHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred hcCCCeEEEecCCCCCCCC-cCCCchHHHHHHHHHhhc-CCeEEEECCcCCHHHHHHHHHcCCCEEEEChHHHh
Confidence 01111111 012222345777777654 89999999999999999999999999999999764
|
| >2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=5.6e-07 Score=87.61 Aligned_cols=142 Identities=10% Similarity=0.163 Sum_probs=109.9
Q ss_pred CCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEec
Q 017176 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCR 142 (376)
Q Consensus 65 ~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR 142 (376)
-|+..++.+.+++++.+.|+++.+.||+.|.|++|+ +++...+++++||+.+ ++++.++..
T Consensus 131 v~~~~~i~~~~~~~~~~~a~~~~~~Gf~~iKik~g~-----------------~~~~~~e~v~avr~a~g~~~~l~vDan 193 (369)
T 2p8b_A 131 FPVTHVLSIADPENMAEEAASMIQKGYQSFKMKVGT-----------------NVKEDVKRIEAVRERVGNDIAIRVDVN 193 (369)
T ss_dssp EECCEEECSCCHHHHHHHHHHHHHTTCCEEEEECCS-----------------CHHHHHHHHHHHHHHHCTTSEEEEECT
T ss_pred eeeeEEecCCChHHHHHHHHHHHHcCcCEEEEEeCC-----------------CHHHHHHHHHHHHHHhCCCCeEEEECC
Confidence 345567777889999999999999999999998763 4678889999999887 578989888
Q ss_pred CCCCCCccHHHHH-HHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHH
Q 017176 143 IGVDDHDSYNQLC-DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE 221 (376)
Q Consensus 143 ~g~~~~~~~~~~~-~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~d 221 (376)
-+|+. ++.+ ++ .+.+++.|+++|. . .+++.+++..+++++.. ++||++++.+.++++
T Consensus 194 ~~~~~----~~a~~~~-~~~l~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~iPI~~dE~~~~~~~ 251 (369)
T 2p8b_A 194 QGWKN----SANTLTA-LRSLGHLNIDWIE----Q------------PVIADDIDAMAHIRSKT-DLPLMIDEGLKSSRE 251 (369)
T ss_dssp TTTBS----HHHHHHH-HHTSTTSCCSCEE----C------------CBCTTCHHHHHHHHHTC-CSCEEESTTCCSHHH
T ss_pred CCCCH----HHHHHHH-HHHHHhCCCcEEE----C------------CCCcccHHHHHHHHHhC-CCCEEeCCCCCCHHH
Confidence 88864 2444 44 4457788998875 1 01223477777887764 899999999999999
Q ss_pred HHHHHH-cCcCeeEEchHHhhCCch
Q 017176 222 VNAALR-KGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 222 a~~~l~-~Gad~VmiGRa~l~~P~l 245 (376)
+.++++ ..||+|++-..-++-.+-
T Consensus 252 ~~~~i~~~~~d~v~ik~~~~GGit~ 276 (369)
T 2p8b_A 252 MRQIIKLEAADKVNIKLMKCGGIYP 276 (369)
T ss_dssp HHHHHHHTCCSEEEECHHHHTSHHH
T ss_pred HHHHHHhCCCCEEEeecchhCCHHH
Confidence 999998 679999997776666543
|
| >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.6e-06 Score=78.05 Aligned_cols=203 Identities=13% Similarity=0.073 Sum_probs=119.8
Q ss_pred CCCeecCCcEEEccCCCCChH-HHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecC-CCHHHH
Q 017176 2 VARQYLPPWFSVAPMMDWTDN-HYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG-SNLDNL 79 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~-~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g-~~~~~~ 79 (376)
|++.+|..|+++- -..+.+. .++....+.| +.++..-+-..+ +. ......+++.-+ +.++..+-.| .+.++.
T Consensus 6 i~~~~~~srl~~G-tgky~~~~~~~~ai~asg-~eivtva~rR~~-~~--~~~~~~~~~~i~-~~~~lpntaG~~taeeA 79 (268)
T 2htm_A 6 VGPVELKSRLILG-SGKYEDFGVMREAIAAAK-AEVVTVSVRRVE-LK--APGHVGLLEALE-GVRLLPNTAGARTAEEA 79 (268)
T ss_dssp ETTEEECCSEEEE-CSSCSCHHHHHHHHHHTT-CSEEEEEEEECC----------CHHHHTT-TSEEEEBCTTCCSHHHH
T ss_pred ECCEEeecceEEe-cCCCCCHHHHHHHHHHhC-CCEEEEEccccC-CC--CCCcccHHHHHh-hhhccCcccCCCCHHHH
Confidence 7899999999985 3446555 4455556665 666544422221 10 111123333333 5556666666 578999
Q ss_pred HHHHHHHHHC-CCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHH
Q 017176 80 AKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 158 (376)
Q Consensus 80 ~~aa~~~~~~-G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i 158 (376)
..+++++.+. |-+.|.|- +.....| ++.|+....+-.+.+.+. ++.+...+. ++ . .+
T Consensus 80 v~~a~lare~~gt~~iKlE-------vi~d~~~---l~pD~~~tv~aa~~L~k~-Gf~Vlpy~~---~D---~-~~---- 137 (268)
T 2htm_A 80 VRLARLGRLLTGERWVKLE-------VIPDPTY---LLPDPLETLKAAERLIEE-DFLVLPYMG---PD---L-VL---- 137 (268)
T ss_dssp HHHHHHHHHHHCCSEEBCC-------CCSCTTT---TCCCHHHHHHHHHHHHHT-TCEECCEEC---SC---H-HH----
T ss_pred HHHHHhhhHhcCcceeeee-------eccCccc---cCcCHHHHHHHHHHHHHC-CCEEeeccC---CC---H-HH----
Confidence 9999988764 55666542 2222222 566776666655555432 322221111 22 2 22
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCC-CeEEEecCCCCHHHHHHHHHcCcCeeEEch
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD-LTFTLNGGINTVDEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~-ipVi~nGgI~s~~da~~~l~~Gad~VmiGR 237 (376)
++.+++.|+++|..-+.--. .|. ...+.+.+..+++..++ +|||..|||.+++|+..+++.|||+|++|+
T Consensus 138 ak~l~~~G~~aVmPlg~pIG-sG~--------Gi~~~~~L~~i~~~~~~~vPVI~~GGI~tpsDAa~AmeLGAdgVlVgS 208 (268)
T 2htm_A 138 AKRLAALGTATVMPLAAPIG-SGW--------GVRTRALLELFAREKASLPPVVVDAGLGLPSHAAEVMELGLDAVLVNT 208 (268)
T ss_dssp HHHHHHHTCSCBEEBSSSTT-TCC--------CSTTHHHHHHHHHTTTTSSCBEEESCCCSHHHHHHHHHTTCCEEEESH
T ss_pred HHHHHhcCCCEEEecCccCc-CCc--------ccCCHHHHHHHHHhcCCCCeEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 34456789998844232100 011 11124567777763457 999999999999999999999999999999
Q ss_pred HHhh
Q 017176 238 AAYQ 241 (376)
Q Consensus 238 a~l~ 241 (376)
++..
T Consensus 209 AI~~ 212 (268)
T 2htm_A 209 AIAE 212 (268)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 9874
|
| >2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A | Back alignment and structure |
|---|
Probab=98.63 E-value=3.4e-07 Score=89.87 Aligned_cols=140 Identities=6% Similarity=-0.042 Sum_probs=106.2
Q ss_pred CEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEec
Q 017176 66 PIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCR 142 (376)
Q Consensus 66 p~~vQL~-g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR 142 (376)
|+-..+. ..++++|.++|+++.+.||+.|+|++|| .+++. .+++++||+.+ ++++.++..
T Consensus 154 p~~~~~g~~~~~e~~~~~a~~~~~~Gf~~vKik~g~----------------~~~~~-~e~v~avr~a~g~d~~l~vDan 216 (388)
T 2nql_A 154 PAYVSGLPERTLKARGELAKYWQDRGFNAFKFATPV----------------ADDGP-AAEIANLRQVLGPQAKIAADMH 216 (388)
T ss_dssp EEEEECCCCSSHHHHHHHHHHHHHTTCCEEEEEGGG----------------CTTCH-HHHHHHHHHHHCTTSEEEEECC
T ss_pred EeeEEeCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC----------------CChHH-HHHHHHHHHHhCCCCEEEEECC
Confidence 4444443 3589999999999999999999998764 23567 88999999877 688999988
Q ss_pred CCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHH
Q 017176 143 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 222 (376)
Q Consensus 143 ~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da 222 (376)
-+|+ .++.+++ .+.+++.|+++|. + .+++.+++..+++++.. ++||++++.+.+++++
T Consensus 217 ~~~~----~~~a~~~-~~~l~~~~i~~iE-----q-----------P~~~~d~~~~~~l~~~~-~iPI~~dE~~~~~~~~ 274 (388)
T 2nql_A 217 WNQT----PERALEL-IAEMQPFDPWFAE-----A-----------PVWTEDIAGLEKVSKNT-DVPIAVGEEWRTHWDM 274 (388)
T ss_dssp SCSC----HHHHHHH-HHHHGGGCCSCEE-----C-----------CSCTTCHHHHHHHHTSC-CSCEEECTTCCSHHHH
T ss_pred CCCC----HHHHHHH-HHHHhhcCCCEEE-----C-----------CCChhhHHHHHHHHhhC-CCCEEEeCCcCCHHHH
Confidence 7775 3455554 3456789999874 0 01223477777887764 8999999999999999
Q ss_pred HHHHH-cCcCeeEEchHHhhCCch
Q 017176 223 NAALR-KGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 223 ~~~l~-~Gad~VmiGRa~l~~P~l 245 (376)
+++++ ..||+|++-... +.++-
T Consensus 275 ~~~i~~~~~d~v~ik~~~-GGit~ 297 (388)
T 2nql_A 275 RARIERCRIAIVQPEMGH-KGITN 297 (388)
T ss_dssp HHHHTTSCCSEECCCHHH-HCHHH
T ss_pred HHHHHcCCCCEEEecCCC-CCHHH
Confidence 99998 669999997766 66554
|
| >2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.61 E-value=3.5e-07 Score=89.85 Aligned_cols=140 Identities=8% Similarity=0.018 Sum_probs=107.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEecCCCCCc--cccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCC
Q 017176 73 GSNLDNLAKATELANAYNYDEINLNCGCPSP--KVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDH 148 (376)
Q Consensus 73 g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~--~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~ 148 (376)
+.++++|.++|+++.+.||+.|.|+.||+.. ...+ ..||++..++++...+++++||+.+ ++++.+...-+|+
T Consensus 135 ~~~~~~~~~~a~~~~~~Gf~~vKik~g~~~~g~~~~~-~~~gg~~~~~~~~~~e~v~avr~a~G~d~~l~vD~n~~~~-- 211 (392)
T 2poz_A 135 ADTPDEFARAVERPLKEGYGALKFYPLAQRVGSALQH-VTRRSMSAEAIELAYRRVKAVRDAAGPEIELMVDLSGGLT-- 211 (392)
T ss_dssp CCSHHHHHHHTHHHHHTTCSEEEECCCCEEETTEEEC-CBTTBCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSC--
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccccccccccc-cccCCcchhhHHHHHHHHHHHHHhcCCCCEEEEECCCCCC--
Confidence 3579999999999999999999999987431 0012 3578888888999999999999987 5788888877765
Q ss_pred ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-
Q 017176 149 DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR- 227 (376)
Q Consensus 149 ~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~- 227 (376)
.++.++++ +.+++.|+++|.- .+++.+++..+++++.. ++||++.+.+.++++++++++
T Consensus 212 --~~~a~~~~-~~l~~~~i~~iE~----------------P~~~~~~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~i~~ 271 (392)
T 2poz_A 212 --TDETIRFC-RKIGELDICFVEE----------------PCDPFDNGALKVISEQI-PLPIAVGERVYTRFGFRKIFEL 271 (392)
T ss_dssp --HHHHHHHH-HHHGGGCEEEEEC----------------CSCTTCHHHHHHHHHHC-SSCEEECTTCCHHHHHHHHHTT
T ss_pred --HHHHHHHH-HHHHhcCCCEEEC----------------CCCcccHHHHHHHHhhC-CCCEEecCCcCCHHHHHHHHHc
Confidence 34555554 4467889988751 11223477777887765 899999999999999999998
Q ss_pred cCcCeeEE
Q 017176 228 KGAHHVMV 235 (376)
Q Consensus 228 ~Gad~Vmi 235 (376)
..+|.|++
T Consensus 272 ~~~d~v~i 279 (392)
T 2poz_A 272 QACGIIQP 279 (392)
T ss_dssp TCCSEECC
T ss_pred CCCCEEec
Confidence 56899887
|
| >2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B | Back alignment and structure |
|---|
Probab=98.59 E-value=9.9e-07 Score=86.21 Aligned_cols=140 Identities=13% Similarity=0.060 Sum_probs=108.2
Q ss_pred CCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEec
Q 017176 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCR 142 (376)
Q Consensus 65 ~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR 142 (376)
-|+...+...+++.+.++|+++.+.||+.|++++||| +++...+++++||+.+ ++++.++..
T Consensus 135 v~~~~~~~~~~~e~~~~~a~~~~~~Gf~~iKik~g~~----------------~~~~~~e~v~avr~a~g~~~~l~vDan 198 (378)
T 2qdd_A 135 VPINSSISTGTPDQMLGLIAEAAAQGYRTHSAKIGGS----------------DPAQDIARIEAISAGLPDGHRVTFDVN 198 (378)
T ss_dssp EEBEEEECSCCHHHHHHHHHHHHHHTCCEEEEECCSS----------------CHHHHHHHHHHHHHSCCTTCEEEEECT
T ss_pred CceEEEecCCCHHHHHHHHHHHHHHhhhheeecCCCC----------------ChHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 3444455456899999999999899999999998875 4678889999999987 578989888
Q ss_pred CCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHH
Q 017176 143 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 222 (376)
Q Consensus 143 ~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da 222 (376)
-+|+ .++.+++ .+.++ .|+ +|. + .++ +++..+++++.. ++||++++.+.+++++
T Consensus 199 ~~~~----~~~a~~~-~~~l~-~~i-~iE-----q-----------P~~--d~~~~~~l~~~~-~iPI~~dE~~~~~~~~ 252 (378)
T 2qdd_A 199 RAWT----PAIAVEV-LNSVR-ARD-WIE-----Q-----------PCQ--TLDQCAHVARRV-ANPIMLDECLHEFSDH 252 (378)
T ss_dssp TCCC----HHHHHHH-HTSCC-CCC-EEE-----C-----------CSS--SHHHHHHHHTTC-CSCEEECTTCCSHHHH
T ss_pred CCCC----HHHHHHH-HHHhC-CCc-EEE-----c-----------CCC--CHHHHHHHHHhC-CCCEEECCCcCCHHHH
Confidence 7775 3355554 34456 787 653 0 011 477778887764 8999999999999999
Q ss_pred HHHHH-cCcCeeEEchHHhhCCchh
Q 017176 223 NAALR-KGAHHVMVGRAAYQNPWYT 246 (376)
Q Consensus 223 ~~~l~-~Gad~VmiGRa~l~~P~lf 246 (376)
+++++ ..||.|++-...++.++-+
T Consensus 253 ~~~i~~~~~d~v~ik~~~~GGi~~~ 277 (378)
T 2qdd_A 253 LAAWSRGACEGVKIKPNRVGGLTRA 277 (378)
T ss_dssp HHHHHHTCCSEEEECHHHHTSHHHH
T ss_pred HHHHHhCCCCEEEecccccCCHHHH
Confidence 99998 6799999988887777653
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=98.59 E-value=8.5e-07 Score=83.65 Aligned_cols=49 Identities=18% Similarity=0.268 Sum_probs=42.2
Q ss_pred HHHHHHHHhhCCCCeEE--EecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017176 195 YEYYYALLRDFPDLTFT--LNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 195 ~~~v~~~~~~~~~ipVi--~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
++.+.++.+.. ++||+ +.|||.+++|+.++++.|||+|++|++++..+.
T Consensus 196 ~~ll~~i~~~~-~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~d 246 (297)
T 4adt_A 196 IDLILLTRKLK-RLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESEN 246 (297)
T ss_dssp HHHHHHHHHHT-SCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSC
T ss_pred HHHHHHHHHhc-CCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCC
Confidence 66777777664 78876 999999999999999999999999999997554
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.1e-07 Score=112.80 Aligned_cols=201 Identities=15% Similarity=0.111 Sum_probs=124.2
Q ss_pred CCcEEEccCCC-CChHHHHHHHHHhCCCcEEE-ecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHH------
Q 017176 8 PPWFSVAPMMD-WTDNHYRTLARLISKHAWLY-TEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNL------ 79 (376)
Q Consensus 8 ~nri~lAPM~~-~td~~~r~~~~~~Gg~gl~~-te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~------ 79 (376)
+.||++|||++ .++..+...+.++||.|.+- ..+.+.+.+.....++.+ ..+.+.|+.+++.-.+|..+
T Consensus 427 ~~PIi~a~M~~~~s~~~LaaAVs~AGglG~l~~~g~~~~~~l~~~i~~~r~---~~~~~~p~~vNl~~~~p~~~~~~~g~ 503 (3089)
T 3zen_D 427 RSPILLAGMTPTTVDAKIVAAAANAGHWAELAGGGQVTEQIFNDRIAELET---LLEPGRAIQFNTLFLDPYLWKLQVGG 503 (3089)
T ss_dssp SCSEEECCCHHHHTSHHHHHHHHHTTCEEEECSTTCCSHHHHHHHHHHHHH---HSCTTCCCEEEEECSCHHHHHHHHHH
T ss_pred CCCEEeCCCcCCcCCHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHH---hcCCCCceeechhhcChhhhhhccCH
Confidence 67899999995 56899999999999988873 333344433222222222 23347889999987777431
Q ss_pred HHHHHHHHHCC--CCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCcc-EEEEecCCCCCCccHHHHHH
Q 017176 80 AKATELANAYN--YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP-VSVKCRIGVDDHDSYNQLCD 156 (376)
Q Consensus 80 ~~aa~~~~~~G--~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~p-v~vKiR~g~~~~~~~~~~~~ 156 (376)
.+..+.+.+.| +|+|-+.+|.|.. +...++++.+++. ++. +.++.. +..+..+
T Consensus 504 ~~~~~~~~~~g~~vdgv~~~aG~P~~----------------ee~~~~i~~l~~~-Gi~~i~~~~~-------t~~~a~~ 559 (3089)
T 3zen_D 504 KRLVQRARQSGAPIDGLVVSAGIPDL----------------EEAVDIIDELNEV-GISHVVFKPG-------TVEQIRS 559 (3089)
T ss_dssp HHHHHHHHHTTCSCCEEEEESSCCCH----------------HHHHHHHTSTTHH-HHCSEEECCC-------SHHHHHH
T ss_pred HHHHHHHHHcCCCceEEEEeCCCCch----------------hHhHHHHHHHHHc-CCEEEEEeCC-------CHHHHHH
Confidence 35667778889 8899998888841 2223344443332 332 222321 2222212
Q ss_pred HHHHHhhcC-Cc-cEEEEccCccccCCCCCCCCCCCCcccHHHH----HHHHhhCCCCeEEEecCCCCHHHHHHHH----
Q 017176 157 FIYKVSSLS-PT-RHFIIHSRKALLNGISPAENRTIPPLKYEYY----YALLRDFPDLTFTLNGGINTVDEVNAAL---- 226 (376)
Q Consensus 157 ~i~~~~e~~-Gv-d~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v----~~~~~~~~~ipVi~nGgI~s~~da~~~l---- 226 (376)
+.++..+. |. ..|.+.|.+. +|+.+.. . ....+ .++ ++..++|||+.|||.|++++..++
T Consensus 560 -~~~i~~d~~~~~y~vv~~G~ea--GGH~g~~--~----~~~ll~~~~~~i-r~~~~iPViaaGGI~d~~~vaaal~g~w 629 (3089)
T 3zen_D 560 -VIRIAAEVPTKPVIVHIEGGRA--GGHHSWE--D----LDDLLLATYSEL-RSRSNITICVGGGIGTPERSAEYLSGRW 629 (3089)
T ss_dssp -HHHHHTTSTTSCEEEEECCSSS--SEECCSC--C----HHHHHHHHHHHH-TTCTTEEEEEESSCCCTTTTHHHHHTGG
T ss_pred -HHHhhhhcCCCcEEEEEeCCCc--CCCCCcc--c----HHHHHHHHHHHH-hhcCCCeEEEEeCCCCHHHHHHHhcccc
Confidence 22222221 21 1788887764 2222111 1 12333 344 344689999999999999999999
Q ss_pred -------HcCcCeeEEchHHhhCCch
Q 017176 227 -------RKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 227 -------~~Gad~VmiGRa~l~~P~l 245 (376)
..|||||++|+.++..+.-
T Consensus 630 s~~~~~p~lGAdGV~vGTrfl~t~Ea 655 (3089)
T 3zen_D 630 AEVHGYPLMPIDGILVGTAAMATLEA 655 (3089)
T ss_dssp GGTTTCCCCCCSEEECSSTTTTCTTS
T ss_pred ccccCccCCCCCEEEecHHHHhCccc
Confidence 7899999999999987653
|
| >2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.2e-06 Score=86.25 Aligned_cols=147 Identities=5% Similarity=-0.042 Sum_probs=110.0
Q ss_pred CCEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCH-HHHHHHHHHHhccc--CccEEEE
Q 017176 65 HPIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDP-KFVGEAMSVIAANT--NVPVSVK 140 (376)
Q Consensus 65 ~p~~vQL~-g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~-~~~~eiv~~v~~~~--~~pv~vK 140 (376)
-|+-..+. +.++++|.++|+++.+.||+.|.+++ ||. |+ ++ +...+++++||+.+ ++++.++
T Consensus 134 vp~~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~-spv---------G~----~~~~~~~e~v~avr~a~G~d~~l~vD 199 (401)
T 2hzg_A 134 KRPYASLLFGDTPQETLERARAARRDGFAAVKFGW-GPI---------GR----GTVAADADQIMAAREGLGPDGDLMVD 199 (401)
T ss_dssp BEEEEEEECCSSHHHHHHHHHHHHHTTCSEEEEES-TTT---------TS----SCHHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred eEeeEEcCCCCCHHHHHHHHHHHHHhCCCeEEEcC-CCC---------CC----CHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 34443443 57899999999999999999999996 653 33 34 77889999999887 6889999
Q ss_pred ecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHh-hCCCCeEEEecCCCCH
Q 017176 141 CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLR-DFPDLTFTLNGGINTV 219 (376)
Q Consensus 141 iR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~-~~~~ipVi~nGgI~s~ 219 (376)
..-+|.. +.++.++++ +.+++.|+++|. . . +++.+++..+++++ .. ++||++++.+.++
T Consensus 200 an~~~~~--~~~~a~~~~-~~l~~~~i~~iE----q----P--------~~~~d~~~~~~l~~~~~-~iPI~~dE~~~~~ 259 (401)
T 2hzg_A 200 VGQIFGE--DVEAAAARL-PTLDAAGVLWLE----E----P--------FDAGALAAHAALAGRGA-RVRIAGGEAAHNF 259 (401)
T ss_dssp CTTTTTT--CHHHHHTTH-HHHHHTTCSEEE----C----C--------SCTTCHHHHHHHHTTCC-SSEEEECTTCSSH
T ss_pred CCCCCCC--CHHHHHHHH-HHHHhcCCCEEE----C----C--------CCccCHHHHHHHHhhCC-CCCEEecCCcCCH
Confidence 8888820 123445443 446789999874 1 0 12234777778776 54 8999999999999
Q ss_pred HHHHHHHH-cCcCeeEEchHHhhCCch
Q 017176 220 DEVNAALR-KGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 220 ~da~~~l~-~Gad~VmiGRa~l~~P~l 245 (376)
++++++++ ..||+|++-...++.++-
T Consensus 260 ~~~~~~i~~~~~d~v~ik~~~~GGit~ 286 (401)
T 2hzg_A 260 HMAQHLMDYGRIGFIQIDCGRIGGLGP 286 (401)
T ss_dssp HHHHHHHHHSCCSEEEECHHHHTSHHH
T ss_pred HHHHHHHHCCCCCEEEeCcchhCCHHH
Confidence 99999998 679999998777776654
|
| >3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.1e-06 Score=85.90 Aligned_cols=141 Identities=10% Similarity=0.024 Sum_probs=110.5
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEe
Q 017176 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKC 141 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKi 141 (376)
..|+..++.+.+++.+++.++.+.+.||+.|.|++|| +++.-.+++++||+.+ ++++.|+.
T Consensus 134 ~v~~~~~~~~~~~e~~~~~a~~~~~~G~~~iKiK~G~-----------------~~~~d~~~v~avR~a~g~~~~l~vDa 196 (378)
T 3eez_A 134 PRPIASSVGAKSVEETRAVIDRYRQRGYVAHSVKIGG-----------------DVERDIARIRDVEDIREPGEIVLYDV 196 (378)
T ss_dssp CEEBBCCBCSCCHHHHHHHHHHHHHTTCCEEEEECCS-----------------CHHHHHHHHHHHTTSCCTTCEEEEEC
T ss_pred eEEEEEEecCCCHHHHHHHHHHHHhCCCCEEEeccCC-----------------CHHHHHHHHHHHHHHcCCCceEEEEC
Confidence 3456667778899999999999989999999999876 3566788999999987 57899999
Q ss_pred cCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHH
Q 017176 142 RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE 221 (376)
Q Consensus 142 R~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~d 221 (376)
.-+|+. ++.+++ ++.+++.|+ +|. . .++ +++.++++++.. ++||++++.+.++++
T Consensus 197 n~~~~~----~~a~~~-~~~l~~~~i-~iE----q------------P~~--~~~~~~~l~~~~-~iPIa~dE~~~~~~~ 251 (378)
T 3eez_A 197 NRGWTR----QQALRV-MRATEDLHV-MFE----Q------------PGE--TLDDIAAIRPLH-SAPVSVDECLVTLQD 251 (378)
T ss_dssp TTCCCH----HHHHHH-HHHTGGGTC-CEE----C------------CSS--SHHHHHHTGGGC-CCCEEECTTCCSHHH
T ss_pred CCCCCH----HHHHHH-HHHhccCCe-EEe----c------------CCC--CHHHHHHHHhhC-CCCEEECCCCCCHHH
Confidence 988864 344443 445677887 764 0 011 366677776654 899999999999999
Q ss_pred HHHHHH-cCcCeeEEchHHhhCCchh
Q 017176 222 VNAALR-KGAHHVMVGRAAYQNPWYT 246 (376)
Q Consensus 222 a~~~l~-~Gad~VmiGRa~l~~P~lf 246 (376)
+.++++ .++|.|++-.+.++.++-+
T Consensus 252 ~~~~l~~~~~d~v~ik~~~~GGit~~ 277 (378)
T 3eez_A 252 AARVARDGLAEVFGIKLNRVGGLTRA 277 (378)
T ss_dssp HHHHHHTTCCSEEEEEHHHHTSHHHH
T ss_pred HHHHHHcCCCCEEEeCchhcCCHHHH
Confidence 999998 6799999999888887754
|
| >2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.2e-06 Score=83.51 Aligned_cols=139 Identities=9% Similarity=0.051 Sum_probs=106.1
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEe
Q 017176 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKC 141 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKi 141 (376)
..|+...+.+.+++++.++|+++.+.||+.|.|++|+ +++...+++++||+.+ ++++.++.
T Consensus 135 ~vp~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~-----------------~~~~~~e~v~avr~a~g~~~~l~vDa 197 (371)
T 2ps2_A 135 RLPLISSIYVGEPEDMRARVAKYRAKGYKGQSVKISG-----------------EPVTDAKRITAALANQQPDEFFIVDA 197 (371)
T ss_dssp CEEBEEEECSCCHHHHHHHHHHHHTTTCCEEEEECCS-----------------CHHHHHHHHHHHTTTCCTTCEEEEEC
T ss_pred ceEEEEEeCCCCHHHHHHHHHHHHHhChheEEeecCC-----------------CHHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 3355556666789999999999999999999998763 3678889999999987 57888888
Q ss_pred cCCCCCCccHHHHHHHHHHHh-hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHH
Q 017176 142 RIGVDDHDSYNQLCDFIYKVS-SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVD 220 (376)
Q Consensus 142 R~g~~~~~~~~~~~~~i~~~~-e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~ 220 (376)
.-+|+ .++.++++ +.+ ++.|+ +|. .. ++ +++..+++++.. ++||++++.+.+++
T Consensus 198 n~~~~----~~~a~~~~-~~l~~~~~i-~iE----~P------------~~--~~~~~~~l~~~~-~iPI~~dE~~~~~~ 252 (371)
T 2ps2_A 198 NGKLS----VETALRLL-RLLPHGLDF-ALE----AP------------CA--TWRECISLRRKT-DIPIIYDELATNEM 252 (371)
T ss_dssp TTBCC----HHHHHHHH-HHSCTTCCC-EEE----CC------------BS--SHHHHHHHHTTC-CSCEEESTTCCSHH
T ss_pred CCCcC----HHHHHHHH-HHHHhhcCC-cCc----CC------------cC--CHHHHHHHHhhC-CCCEEeCCCcCCHH
Confidence 77775 34555543 455 78888 764 00 01 377777777664 89999999999999
Q ss_pred HHHHHHH-cCcCeeEEchHHhhCCc
Q 017176 221 EVNAALR-KGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 221 da~~~l~-~Gad~VmiGRa~l~~P~ 244 (376)
+++++++ ..||.|++--.-++-..
T Consensus 253 ~~~~~i~~~~~d~v~ik~~~~GGit 277 (371)
T 2ps2_A 253 SIVKILADDAAEGIDLKISKAGGLT 277 (371)
T ss_dssp HHHHHHHHTCCSEEEEEHHHHTSHH
T ss_pred HHHHHHHhCCCCEEEechhhcCCHH
Confidence 9999998 67999999665555443
|
| >1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=1.8e-06 Score=84.09 Aligned_cols=136 Identities=8% Similarity=0.046 Sum_probs=102.7
Q ss_pred ecCCCHHHHHHHHHHHHH-CCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCC
Q 017176 71 IGGSNLDNLAKATELANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDD 147 (376)
Q Consensus 71 L~g~~~~~~~~aa~~~~~-~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~ 147 (376)
+.+.+++.+.+.|+.+.+ .||+.|.|++|++ +++...+++++||+.+ ++++.+...-+|+
T Consensus 138 ~~~~~~e~~~~~a~~~~~~~Gf~~iKik~g~~----------------~~~~~~e~v~avr~a~g~~~~l~vDan~~~~- 200 (370)
T 1nu5_A 138 LASGDTARDIDSALEMIETRRHNRFKVKLGAR----------------TPAQDLEHIRSIVKAVGDRASVRVDVNQGWD- 200 (370)
T ss_dssp ECSSCHHHHHHHHHHHHHTTSCSEEEEECSSS----------------CHHHHHHHHHHHHHHHGGGCEEEEECTTCCC-
T ss_pred ecCCCHHHHHHHHHHHHHhCCccEEEEecCCC----------------ChHHHHHHHHHHHHhcCCCCEEEEECCCCCC-
Confidence 344679999999999988 9999999998764 3456788899998876 4788888877775
Q ss_pred CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH
Q 017176 148 HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR 227 (376)
Q Consensus 148 ~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~ 227 (376)
.++.+++ .+.+++.|+++|. . .+++.+++..+++++.. ++||++.+.+.+++++.++++
T Consensus 201 ---~~~a~~~-~~~l~~~~i~~iE----q------------P~~~~~~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~i~ 259 (370)
T 1nu5_A 201 ---EQTASIW-IPRLEEAGVELVE----Q------------PVPRANFGALRRLTEQN-GVAILADESLSSLSSAFELAR 259 (370)
T ss_dssp ---HHHHHHH-HHHHHHHTCCEEE----C------------CSCTTCHHHHHHHHHHC-SSEEEESTTCCSHHHHHHHHH
T ss_pred ---HHHHHHH-HHHHHhcCcceEe----C------------CCCcccHHHHHHHHHhC-CCCEEeCCCCCCHHHHHHHHH
Confidence 3444554 3456778999875 1 11223477778887765 899999999999999999998
Q ss_pred -cCcCeeEEchHHhhCCc
Q 017176 228 -KGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 228 -~Gad~VmiGRa~l~~P~ 244 (376)
..||.|++--.-++-.+
T Consensus 260 ~~~~d~v~ik~~~~GGit 277 (370)
T 1nu5_A 260 DHAVDAFSLKLCNMGGIA 277 (370)
T ss_dssp TTCCSEEEECHHHHTSHH
T ss_pred hCCCCEEEEchhhcCCHH
Confidence 56999999555544443
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.6e-07 Score=86.34 Aligned_cols=82 Identities=21% Similarity=0.242 Sum_probs=63.8
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.++++|+|+|+++..+....+ ....++.++++++. .++||+++|+|.+++++.++++.|||+|++|++
T Consensus 36 a~~~~~~Gad~i~v~d~~~~~~~---------~~~~~~~i~~i~~~-~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg~~ 105 (253)
T 1thf_D 36 GKFYSEIGIDELVFLDITASVEK---------RKTMLELVEKVAEQ-IDIPFTVGGGIHDFETASELILRGADKVSINTA 105 (253)
T ss_dssp HHHHHHTTCCEEEEEESSCSSSH---------HHHHHHHHHHHHTT-CCSCEEEESSCCSHHHHHHHHHTTCSEEEESHH
T ss_pred HHHHHHcCCCEEEEECCchhhcC---------CcccHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChH
Confidence 34567899999999975532111 11235677777765 489999999999999999999999999999999
Q ss_pred HhhCCchhhHhh
Q 017176 239 AYQNPWYTLGHV 250 (376)
Q Consensus 239 ~l~~P~lf~~~~ 250 (376)
++.+|+++.+.+
T Consensus 106 ~l~~p~~~~~~~ 117 (253)
T 1thf_D 106 AVENPSLITQIA 117 (253)
T ss_dssp HHHCTHHHHHHH
T ss_pred HHhChHHHHHHH
Confidence 999999764433
|
| >1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A | Back alignment and structure |
|---|
Probab=98.49 E-value=2.9e-06 Score=82.48 Aligned_cols=140 Identities=9% Similarity=0.011 Sum_probs=105.6
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecC
Q 017176 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRI 143 (376)
Q Consensus 66 p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~ 143 (376)
|+...+.+.+++++.+.|+.+.+.||+.|.+++||+ +++...+++++||+.+ ++++.+...-
T Consensus 131 ~~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~~----------------~~~~d~~~v~avr~a~g~~~~l~vDan~ 194 (366)
T 1tkk_A 131 ETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKD----------------DIATDIARIQEIRKRVGSAVKLRLDANQ 194 (366)
T ss_dssp EBCEEECSCCHHHHHHHHHHHHHHTCCEEEEECCSS----------------CHHHHHHHHHHHHHHHCSSSEEEEECTT
T ss_pred eeeEEecCCCHHHHHHHHHHHHHcCCCeEEEEeCCC----------------CHHHHHHHHHHHHHHhCCCCeEEEECCC
Confidence 344566667899999999998889999999988752 4677888999999876 5788898887
Q ss_pred CCCCCccHHHHHHHHHHHhhc--CCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHH
Q 017176 144 GVDDHDSYNQLCDFIYKVSSL--SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE 221 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~--~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~d 221 (376)
+|+ .++.++++ +.+++ .|+++|. . .+++.+++..+++.+.. ++||++++.+.++++
T Consensus 195 ~~~----~~~a~~~~-~~l~~~~~~i~~iE--------q--------P~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~ 252 (366)
T 1tkk_A 195 GWR----PKEAVTAI-RKMEDAGLGIELVE--------Q--------PVHKDDLAGLKKVTDAT-DTPIMADESVFTPRQ 252 (366)
T ss_dssp CSC----HHHHHHHH-HHHHHTTCCEEEEE--------C--------CSCTTCHHHHHHHHHHC-SSCEEECTTCCSHHH
T ss_pred CCC----HHHHHHHH-HHHhhcCCCceEEE--------C--------CCCcccHHHHHHHHhhC-CCCEEEcCCCCCHHH
Confidence 775 33445543 44677 8888774 1 11233477777887765 899999999999999
Q ss_pred HHHHHH-cCcCeeEEchHHhhCC
Q 017176 222 VNAALR-KGAHHVMVGRAAYQNP 243 (376)
Q Consensus 222 a~~~l~-~Gad~VmiGRa~l~~P 243 (376)
+.++++ ..+|.|++--.-.+-.
T Consensus 253 ~~~~i~~~~~d~v~ik~~~~GGi 275 (366)
T 1tkk_A 253 AFEVLQTRSADLINIKLMKAGGI 275 (366)
T ss_dssp HHHHHHHTCCSEEEECHHHHTSH
T ss_pred HHHHHHhCCCCEEEeehhhhcCH
Confidence 999998 6799999955444443
|
| >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.4e-06 Score=83.84 Aligned_cols=133 Identities=8% Similarity=0.035 Sum_probs=102.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCcc
Q 017176 73 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDS 150 (376)
Q Consensus 73 g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~ 150 (376)
+.++++|.++|+++.+.||+.|.|+.|+. .++...+++++||+.+ ++++.++..-+|+
T Consensus 147 ~~~~~~~~~~a~~~~~~Gf~~vKik~g~~----------------~~~~~~e~v~avR~a~G~d~~l~vDan~~~~---- 206 (391)
T 2qgy_A 147 KKDTNDYLRQIEKFYGKKYGGIKIYPMLD----------------SLSISIQFVEKVREIVGDELPLMLDLAVPED---- 206 (391)
T ss_dssp CCCHHHHHHHHHHHHHTTCSCEEECCCCS----------------SHHHHHHHHHHHHHHHCSSSCEEEECCCCSC----
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEccCCC----------------hHHHHHHHHHHHHHHhCCCCEEEEEcCCCCC----
Confidence 46899999999999999999999987621 1688889999999977 6889999887775
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cC
Q 017176 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KG 229 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~G 229 (376)
.++.+++ .+.+++.|+++|.- .+++.+++..+++++.. ++||++.+.+.++++++++++ ..
T Consensus 207 ~~~a~~~-~~~l~~~~i~~iEq----------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~ 268 (391)
T 2qgy_A 207 LDQTKSF-LKEVSSFNPYWIEE----------------PVDGENISLLTEIKNTF-NMKVVTGEKQSGLVHFRELISRNA 268 (391)
T ss_dssp HHHHHHH-HHHHGGGCCSEEEC----------------SSCTTCHHHHHHHHHHC-SSCEEECTTCCSHHHHHHHHHTTC
T ss_pred HHHHHHH-HHHHHhcCCCeEeC----------------CCChhhHHHHHHHHhhC-CCCEEEcCCcCCHHHHHHHHHcCC
Confidence 3455554 34567899998751 01223477778887765 899999999999999999998 56
Q ss_pred cCeeEEchHHhhCC
Q 017176 230 AHHVMVGRAAYQNP 243 (376)
Q Consensus 230 ad~VmiGRa~l~~P 243 (376)
||.|++-..-++.+
T Consensus 269 ~d~v~ik~~~~GGi 282 (391)
T 2qgy_A 269 ADIFNPDISGMGGL 282 (391)
T ss_dssp CSEECCBTTTSSCH
T ss_pred CCEEEECcchhCCH
Confidence 99999854444443
|
| >3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=2.6e-06 Score=83.58 Aligned_cols=137 Identities=9% Similarity=0.059 Sum_probs=105.4
Q ss_pred CCEEEEe-c-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEE
Q 017176 65 HPIVLQI-G-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVK 140 (376)
Q Consensus 65 ~p~~vQL-~-g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vK 140 (376)
.|+-..+ . +.+++++++.++.+.+.||+.|.|+.|| +++.-.+++++||+.+ ++++.|+
T Consensus 139 v~~y~~~~~~~~~~e~~~~~a~~~~~~G~~~iKiKvG~-----------------~~~~d~~~v~avR~a~g~d~~l~vD 201 (389)
T 3ozy_A 139 VRAYASSIYWDLTPDQAADELAGWVEQGFTAAKLKVGR-----------------APRKDAANLRAMRQRVGADVEILVD 201 (389)
T ss_dssp EEEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEECCS-----------------CHHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred eeeEEecCCCCCCHHHHHHHHHHHHHCCCCEEeeccCC-----------------CHHHHHHHHHHHHHHcCCCceEEEE
Confidence 4666666 4 6789999999999999999999999876 4677788999999886 6789999
Q ss_pred ecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHH-hhCCCCeEEEecCCCCH
Q 017176 141 CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL-RDFPDLTFTLNGGINTV 219 (376)
Q Consensus 141 iR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~-~~~~~ipVi~nGgI~s~ 219 (376)
..-+|+. ++.+++ .+.+++.|+++|. . .+++.+++.+++++ +. .++||++++.+.++
T Consensus 202 an~~~~~----~~A~~~-~~~l~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~~iPIa~dE~i~~~ 259 (389)
T 3ozy_A 202 ANQSLGR----HDALAM-LRILDEAGCYWFE----E------------PLSIDDIEGHRILRAQG-TPVRIATGENLYTR 259 (389)
T ss_dssp CTTCCCH----HHHHHH-HHHHHHTTCSEEE----S------------CSCTTCHHHHHHHHTTC-CSSEEEECTTCCHH
T ss_pred CCCCcCH----HHHHHH-HHHHHhcCCCEEE----C------------CCCcccHHHHHHHHhcC-CCCCEEeCCCCCCH
Confidence 8888863 344443 4456789999885 1 11223477777877 55 48999999999999
Q ss_pred HHHHHHHH-cCcCeeEEchHHh
Q 017176 220 DEVNAALR-KGAHHVMVGRAAY 240 (376)
Q Consensus 220 ~da~~~l~-~Gad~VmiGRa~l 240 (376)
+++.++++ ..+|.|++--+-.
T Consensus 260 ~~~~~~i~~~~~d~v~ik~~~~ 281 (389)
T 3ozy_A 260 NAFNDYIRNDAIDVLQADASRA 281 (389)
T ss_dssp HHHHHHHHTTCCSEECCCTTTS
T ss_pred HHHHHHHHcCCCCEEEeCcccc
Confidence 99999998 6799998844433
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=98.47 E-value=5.6e-06 Score=77.05 Aligned_cols=62 Identities=15% Similarity=0.151 Sum_probs=50.2
Q ss_pred cHHHHHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhC
Q 017176 194 KYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256 (376)
Q Consensus 194 ~~~~v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 256 (376)
+++...++++..+ ++|||+-|||.|++|+.++.+.|||+|.||.+++..++. ...+...+.|
T Consensus 206 dl~~~~~L~~~ip~~~~vIaesGI~t~edv~~l~~~Ga~gvLVG~almr~~d~-~~~~~~l~~g 268 (272)
T 3tsm_A 206 NLAVSERLAKMAPSDRLLVGESGIFTHEDCLRLEKSGIGTFLIGESLMRQHDV-AAATRALLTG 268 (272)
T ss_dssp CTHHHHHHHHHSCTTSEEEEESSCCSHHHHHHHHTTTCCEEEECHHHHTSSCH-HHHHHHHHHC
T ss_pred ChHHHHHHHHhCCCCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHcCCcCH-HHHHHHHHhc
Confidence 3566667777665 699999999999999999999999999999999999886 4444444444
|
| >3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=8.2e-07 Score=82.33 Aligned_cols=156 Identities=13% Similarity=0.083 Sum_probs=98.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCC--HHHHHHHHHHHhcccCccEEEEecCCCCCC----
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLD--PKFVGEAMSVIAANTNVPVSVKCRIGVDDH---- 148 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~--~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~---- 148 (376)
.+++..+.++.+.+.|.|+|.|- . .--. .+.+.++++++++.+++|+.+|..+++.+.
T Consensus 51 ~~~~~~~~~~~~~~sGtDai~VG-S---------------~~vt~~~~~~~~~v~~ik~~~~lPvil~fPP~~g~~~~i~ 114 (286)
T 3vk5_A 51 PVTEAVEKAAELTRLGFAAVLLA-S---------------TDYESFESHMEPYVAAVKAATPLPVVLHFPPRPGAGFPVV 114 (286)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEEE-C---------------SCCSSHHHHHHHHHHHHHHHCSSCEEEECCCBTTTBSCCC
T ss_pred CcHHHHHHHHHHHhcCCCEEEEc-c---------------CCCCcchHHHHHHHHHHHHhCCCCEEEECCCCCCCccccc
Confidence 46777778888889999999884 1 1112 478899999999988999999877322110
Q ss_pred --------------ccHHHHHHH-----HHHHh----hcCC----ccEEEEccC-cc-ccCCCCCCCCCCC---------
Q 017176 149 --------------DSYNQLCDF-----IYKVS----SLSP----TRHFIIHSR-KA-LLNGISPAENRTI--------- 190 (376)
Q Consensus 149 --------------~~~~~~~~~-----i~~~~----e~~G----vd~I~vh~r-~~-~~~g~~~~~~~~~--------- 190 (376)
.+..=+... .+.++ ++.| -.+|.|..+ +. ..-+..+.+...+
T Consensus 115 ~~aDa~l~psvlNs~n~~~i~g~~~~~~aa~~v~~~~~~~ge~ip~gYL~v~~g~k~V~fv~~~~~~~~e~A~~~aYa~~ 194 (286)
T 3vk5_A 115 RGADALLLPALLGSGDDYFVWKSFLETLAAFPGRIPREEWPELLLTVALTFGEDPRTGDLLGTVPVSTASTEEIDRYLHV 194 (286)
T ss_dssp TTCSEEEEEEETTBSSHHHHTHHHHHHHHHCSTTSCGGGCCEEEEEEEEECSCCHHHHHHHCBCCCCCSSSHHHHHHHHH
T ss_pred cCCCEEEEEEEecCCCcccccCcHHHHHHhHHHHHHHHHhCCcceEEEEEECCCCceeeeeCCCCCCCHHHHHHHHHHHH
Confidence 111111111 01112 3344 234455544 11 0001000000000
Q ss_pred ---------------CcccHHHHHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC--Cchh
Q 017176 191 ---------------PPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN--PWYT 246 (376)
Q Consensus 191 ---------------~~~~~~~v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~--P~lf 246 (376)
.+...+.++++++... ++||++-|||+|.++++++++.|||+|.+|++++.| |.++
T Consensus 195 gad~G~~lV~LD~~~~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGSAav~d~~Pelv 268 (286)
T 3vk5_A 195 ARAFGFHMVYLYSRNEHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAGALEQPDWRSAL 268 (286)
T ss_dssp HHHTTCSEEEEECSSSCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESGGGSSTTHHHHH
T ss_pred HHHcCCCEEEEcCCCCcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECchhhcCCCHHHH
Confidence 2334567777777643 799999999999999999999999999999999999 6654
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.5e-06 Score=81.10 Aligned_cols=52 Identities=15% Similarity=0.218 Sum_probs=44.7
Q ss_pred cHHHHHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 194 KYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 194 ~~~~v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
+++.+.++.+..+ ++|||+.|||.|++|+.++++.|||+|.||++++..+..
T Consensus 199 dl~~~~~l~~~v~~~~pvVaegGI~t~edv~~l~~~GadgvlVGsal~~a~dp 251 (272)
T 3qja_A 199 DRDCFARIAPGLPSSVIRIAESGVRGTADLLAYAGAGADAVLVGEGLVTSGDP 251 (272)
T ss_dssp CTTHHHHHGGGSCTTSEEEEESCCCSHHHHHHHHHTTCSEEEECHHHHTCSCH
T ss_pred CHHHHHHHHHhCcccCEEEEECCCCCHHHHHHHHHcCCCEEEEcHHHhCCCCH
Confidence 3555667776665 799999999999999999999999999999999987764
|
| >2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=98.44 E-value=2.9e-06 Score=83.79 Aligned_cols=133 Identities=12% Similarity=0.107 Sum_probs=102.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecC----CCCCccccCCCCcccccc--CCHHHHHHHHHHHhccc--CccEEEEecCCCC
Q 017176 75 NLDNLAKATELANAYNYDEINLNC----GCPSPKVAGHGCFGVSLM--LDPKFVGEAMSVIAANT--NVPVSVKCRIGVD 146 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~----gcP~~~v~r~g~yG~~l~--~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~ 146 (376)
+++.+.+.|+++.+.||+.|.++. |+... . ||+++. ++++...+++++||+.+ ++++.+...-+|+
T Consensus 149 ~~~~~~~~a~~~~~~Gf~~vKik~~~~~G~~~~-----~-~~G~~~~~~~~~~~~e~v~avRea~G~d~~l~vDan~~~~ 222 (410)
T 2qq6_A 149 SNEEYIAVAREAVERGFDAIKLDVDDITGPLHR-----D-FWNGAISPREHEAMVARVAAVREAVGPEVEVAIDMHGRFD 222 (410)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCCSSSTTCS-----C-SSSCCCCHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCCC
T ss_pred CHHHHHHHHHHHHHcCCCEEEeeccccCCcccC-----C-cCccccchhhHHHHHHHHHHHHHhcCCCCEEEEECCCCCC
Confidence 789999999999999999999998 54321 1 566776 47788999999999987 5778887766664
Q ss_pred CCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHH
Q 017176 147 DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL 226 (376)
Q Consensus 147 ~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l 226 (376)
.++.++++ +.+++.|+++|.- .+++.+++..+++.+.. ++||++.+.+.+++++++++
T Consensus 223 ----~~~a~~~~-~~l~~~~i~~iEe----------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i 280 (410)
T 2qq6_A 223 ----IPSSIRFA-RAMEPFGLLWLEE----------------PTPPENLDALAEVRRST-STPICAGENVYTRFDFRELF 280 (410)
T ss_dssp ----HHHHHHHH-HHHGGGCCSEEEC----------------CSCTTCHHHHHHHHTTC-SSCEEECTTCCSHHHHHHHH
T ss_pred ----HHHHHHHH-HHHhhcCCCeEEC----------------CCChhhHHHHHHHHhhC-CCCEEeCCCcCCHHHHHHHH
Confidence 44555554 4567899998761 01223477777877664 89999999999999999999
Q ss_pred H-cCcCeeEE
Q 017176 227 R-KGAHHVMV 235 (376)
Q Consensus 227 ~-~Gad~Vmi 235 (376)
+ ..+|.|++
T Consensus 281 ~~~~~d~v~i 290 (410)
T 2qq6_A 281 AKRAVDYVMP 290 (410)
T ss_dssp HTTCCSEECC
T ss_pred HcCCCCEEec
Confidence 8 56899887
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=98.42 E-value=5.5e-06 Score=77.13 Aligned_cols=166 Identities=15% Similarity=0.160 Sum_probs=101.0
Q ss_pred CCCEEEEecCCCH--HHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCcccccc----------CCHHHHHHHHHHHhc
Q 017176 64 QHPIVLQIGGSNL--DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLM----------LDPKFVGEAMSVIAA 131 (376)
Q Consensus 64 ~~p~~vQL~g~~~--~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~----------~~~~~~~eiv~~v~~ 131 (376)
...++.-|...+| +...+.++.++++|+|.|||+. |...-.- | |-... -+.....++++++++
T Consensus 16 ~~~~i~~i~~gdp~~~~~~~~~~~l~~~GaD~ieig~--P~sdp~~-D--G~~i~~a~~~al~~G~~~~~~~~~v~~ir~ 90 (268)
T 1qop_A 16 EGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGV--PFSDPLA-D--GPTIQNANLRAFAAGVTPAQCFEMLAIIRE 90 (268)
T ss_dssp CCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEEC--CCSCCTT-C--CHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CceEEEEeeCCCCCHHHHHHHHHHHHHCCCCEEEECC--CCCCccC-C--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 3446666766665 8889999999999999999964 3321000 0 11111 245667799999998
Q ss_pred c-cCccEEEEecCCCCC--CccHHHHHHHHHHHhhcCCccEEEEccCccc------------------------------
Q 017176 132 N-TNVPVSVKCRIGVDD--HDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL------------------------------ 178 (376)
Q Consensus 132 ~-~~~pv~vKiR~g~~~--~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~------------------------------ 178 (376)
. +++|+.+=.- ++. ....++. +.. +.++|+|.+++|.-...
T Consensus 91 ~~~~~Pv~lm~y--~n~v~~~g~~~~---~~~-~~~aGadgii~~d~~~e~~~~~~~~~~~~g~~~i~l~~p~t~~~~i~ 164 (268)
T 1qop_A 91 KHPTIPIGLLMY--ANLVFNNGIDAF---YAR-CEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLR 164 (268)
T ss_dssp HCSSSCEEEEEC--HHHHHTTCHHHH---HHH-HHHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHH
T ss_pred cCCCCCEEEEEc--ccHHHHhhHHHH---HHH-HHHcCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEECCCCCHHHHH
Confidence 8 7899766110 110 0011222 222 23467777766532100
Q ss_pred --------------cCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 179 --------------LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 179 --------------~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
..|.++... ...+...+.+.++++. .++||+..|||.|++++.+++..|||+|.+|+++...
T Consensus 165 ~i~~~~~g~v~~~s~~G~tG~~~-~~~~~~~~~i~~lr~~-~~~pi~vggGI~t~e~~~~~~~agAD~vVVGSai~~~ 240 (268)
T 1qop_A 165 QVASYGRGYTYLLSRSGVTGAEN-RGALPLHHLIEKLKEY-HAAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKI 240 (268)
T ss_dssp HHHHHCCSCEEEESSSSCCCSSS-CC--CCHHHHHHHHHT-TCCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred HHHhhCCCcEEEEecCCcCCCcc-CCCchHHHHHHHHHhc-cCCcEEEECCCCCHHHHHHHHHcCCCEEEEChHHhhh
Confidence 001111110 1112225677777765 4899999999999999999999999999999998643
|
| >2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=98.42 E-value=3.8e-06 Score=82.74 Aligned_cols=135 Identities=15% Similarity=0.068 Sum_probs=100.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecC------CCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCC
Q 017176 75 NLDNLAKATELANAYNYDEINLNC------GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVD 146 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~------gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~ 146 (376)
++++|.+.|+++.+.||+.|.|+. |++... ... |...+++++...+++++||+.+ ++++.+...-+|+
T Consensus 146 ~~e~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~s---~~~-g~~~~~~~~~~~e~v~avr~avG~d~~l~vDan~~~~ 221 (403)
T 2ox4_A 146 RKEEYAEEALKAVAEGYDAVKVDVLAHDRNGSREGV---FLE-GPLPSETIKIGVERVEAIRNAVGPDVDIIVENHGHTD 221 (403)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCSSSCTTSCCTTC---CCS-SSCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSC
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccccCCccccccC---ccc-CCCchHHHHHHHHHHHHHHHHhCCCCeEEEECCCCCC
Confidence 899999999999999999999996 654221 111 3223457788999999999977 5788888877764
Q ss_pred CCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHH
Q 017176 147 DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL 226 (376)
Q Consensus 147 ~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l 226 (376)
.++.++++ +.+++.|+++|.- .+++.+++..+++++.. ++||++.+.+.+++++++++
T Consensus 222 ----~~~ai~~~-~~l~~~~i~~iE~----------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i 279 (403)
T 2ox4_A 222 ----LVSAIQFA-KAIEEFNIFFYEE----------------INTPLNPRLLKEAKKKI-DIPLASGERIYSRWGFLPFL 279 (403)
T ss_dssp ----HHHHHHHH-HHHGGGCEEEEEC----------------CSCTTSTHHHHHHHHTC-CSCEEECTTCCHHHHHHHHH
T ss_pred ----HHHHHHHH-HHHHhhCCCEEeC----------------CCChhhHHHHHHHHHhC-CCCEEecCCcCCHHHHHHHH
Confidence 34555554 4567889988751 01223467777777764 89999999999999999999
Q ss_pred H-cCcCeeEE
Q 017176 227 R-KGAHHVMV 235 (376)
Q Consensus 227 ~-~Gad~Vmi 235 (376)
+ ..+|.|++
T Consensus 280 ~~~~~d~v~i 289 (403)
T 2ox4_A 280 EDRSIDVIQP 289 (403)
T ss_dssp HTTCCSEECC
T ss_pred HcCCCCEEec
Confidence 8 56999887
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.5e-06 Score=79.34 Aligned_cols=167 Identities=14% Similarity=0.119 Sum_probs=98.3
Q ss_pred CCCEEEEecCCCH--HHHHHHHHHHHHCCCCEEEecC--CCCCcc---ccC----CCCccccccCCHHHHHHHHHHHhcc
Q 017176 64 QHPIVLQIGGSNL--DNLAKATELANAYNYDEINLNC--GCPSPK---VAG----HGCFGVSLMLDPKFVGEAMSVIAAN 132 (376)
Q Consensus 64 ~~p~~vQL~g~~~--~~~~~aa~~~~~~G~d~IeiN~--gcP~~~---v~r----~g~yG~~l~~~~~~~~eiv~~v~~~ 132 (376)
...++.-|...+| +.+.+.++.++++|+|.|||.. +-|... +.+ .=..| -+.+.+.++++++|+.
T Consensus 17 ~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G----~~~~~~~~~v~~ir~~ 92 (267)
T 3vnd_A 17 KGAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAG----TTSSDCFDIITKVRAQ 92 (267)
T ss_dssp CCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHhc
Confidence 4456777766555 8999999999999999999974 333210 000 00013 3567788999999987
Q ss_pred -cCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEcc--------------------------Ccc--------
Q 017176 133 -TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS--------------------------RKA-------- 177 (376)
Q Consensus 133 -~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~--------------------------r~~-------- 177 (376)
+++|+.+-.-.+.-....+++.++ .+.++|+|.++++- .+.
T Consensus 93 ~~~~Pivlm~Y~npv~~~g~e~f~~----~~~~aGvdgvii~Dlp~ee~~~~~~~~~~~gl~~i~liaP~t~~eri~~i~ 168 (267)
T 3vnd_A 93 HPDMPIGLLLYANLVFANGIDEFYT----KAQAAGVDSVLIADVPVEESAPFSKAAKAHGIAPIFIAPPNADADTLKMVS 168 (267)
T ss_dssp CTTCCEEEEECHHHHHHHCHHHHHH----HHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHH
T ss_pred CCCCCEEEEecCcHHHHhhHHHHHH----HHHHcCCCEEEeCCCCHhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHH
Confidence 788987642110000000122211 12234555554431 110
Q ss_pred ----------ccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHh
Q 017176 178 ----------LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240 (376)
Q Consensus 178 ----------~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l 240 (376)
...|..+.. ...++...+.+.++++. .++||+..|||.+++++.+.+..|||+|.+|++++
T Consensus 169 ~~~~gfvY~vS~~GvTG~~-~~~~~~~~~~v~~vr~~-~~~pv~vGfGI~~~e~~~~~~~~gADgvVVGSaiv 239 (267)
T 3vnd_A 169 EQGEGYTYLLSRAGVTGTE-SKAGEPIENILTQLAEF-NAPPPLLGFGIAEPEQVRAAIKAGAAGAISGSAVV 239 (267)
T ss_dssp HHCCSCEEESCCCCCC---------CHHHHHHHHHTT-TCCCEEECSSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred HhCCCcEEEEecCCCCCCc-cCCcHHHHHHHHHHHHh-cCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHH
Confidence 001211211 11122224566676654 58999999999999999988989999999999876
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=3e-06 Score=75.81 Aligned_cols=152 Identities=15% Similarity=0.237 Sum_probs=89.5
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCcc-ccC--CCCccccc------cCCHHHHHHHHHHH----
Q 017176 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPK-VAG--HGCFGVSL------MLDPKFVGEAMSVI---- 129 (376)
Q Consensus 63 ~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~-v~r--~g~yG~~l------~~~~~~~~eiv~~v---- 129 (376)
.+.|++..|.+.+++++.+.++.+.+.|++.|++...+|... ..+ +..|+..+ ..+++.+...++.=
T Consensus 5 ~~~~i~~~i~~~d~~~~~~~~~~~~~~G~~~i~l~~~~~~~~~~i~~i~~~~~~~l~vg~g~~~~~~~i~~a~~~Gad~V 84 (212)
T 2v82_A 5 TKLPLIAILRGITPDEALAHVGAVIDAGFDAVEIPLNSPQWEQSIPAIVDAYGDKALIGAGTVLKPEQVDALARMGCQLI 84 (212)
T ss_dssp SSSCEEEECTTCCHHHHHHHHHHHHHHTCCEEEEETTSTTHHHHHHHHHHHHTTTSEEEEECCCSHHHHHHHHHTTCCEE
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHhCCCCeEEEeccccCHHHHHHHHHcCCCEE
Confidence 467899999999999999999999999999999987665310 000 00011110 11222221111100
Q ss_pred ------------hcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHH
Q 017176 130 ------------AANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 197 (376)
Q Consensus 130 ------------~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~ 197 (376)
++..+.++.+ |. .+.+++. + ..+.|+|+|.++... +..++.
T Consensus 85 ~~~~~~~~~~~~~~~~g~~~~~----g~---~t~~e~~----~-a~~~G~d~v~v~~t~---------------~~g~~~ 137 (212)
T 2v82_A 85 VTPNIHSEVIRRAVGYGMTVCP----GC---ATATEAF----T-ALEAGAQALKIFPSS---------------AFGPQY 137 (212)
T ss_dssp ECSSCCHHHHHHHHHTTCEEEC----EE---CSHHHHH----H-HHHTTCSEEEETTHH---------------HHCHHH
T ss_pred EeCCCCHHHHHHHHHcCCCEEe----ec---CCHHHHH----H-HHHCCCCEEEEecCC---------------CCCHHH
Confidence 0000111110 10 1122211 1 123566666653311 112567
Q ss_pred HHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 198 YYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 198 v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
+.++++..+ ++||++.|||. .+++.++++.|||+|.+|++++..
T Consensus 138 ~~~l~~~~~~~ipvia~GGI~-~~~i~~~~~~Ga~gv~vGsai~~~ 182 (212)
T 2v82_A 138 IKALKAVLPSDIAVFAVGGVT-PENLAQWIDAGCAGAGLGSDLYRA 182 (212)
T ss_dssp HHHHHTTSCTTCEEEEESSCC-TTTHHHHHHHTCSEEEECTTTCCT
T ss_pred HHHHHHhccCCCeEEEeCCCC-HHHHHHHHHcCCCEEEEChHHhCC
Confidence 777777654 59999999997 999999999999999999999865
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=5.1e-07 Score=82.98 Aligned_cols=79 Identities=15% Similarity=0.209 Sum_probs=61.6
Q ss_pred HHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHH
Q 017176 160 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~ 239 (376)
+.++++|+|+|.++.......+ ....++.+.++++. .++||+++|+|.+.++++++++.|||+|++|+++
T Consensus 38 ~~~~~~Gad~i~v~d~~~~~~~---------~~~~~~~i~~i~~~-~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~ 107 (252)
T 1ka9_F 38 RAYDEAGADELVFLDISATHEE---------RAILLDVVARVAER-VFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAA 107 (252)
T ss_dssp HHHHHHTCSCEEEEECCSSTTC---------HHHHHHHHHHHHTT-CCSCEEEESSCCSHHHHHHHHHHTCSEEEECHHH
T ss_pred HHHHHcCCCEEEEEcCCccccC---------ccccHHHHHHHHHh-CCCCEEEECCcCCHHHHHHHHHcCCCEEEEChHH
Confidence 4456799999999854421111 11235667777776 4899999999999999999999999999999999
Q ss_pred hhCCchhhH
Q 017176 240 YQNPWYTLG 248 (376)
Q Consensus 240 l~~P~lf~~ 248 (376)
+.+|+++.+
T Consensus 108 l~~p~~~~~ 116 (252)
T 1ka9_F 108 VRRPELIRE 116 (252)
T ss_dssp HHCTHHHHH
T ss_pred HhCcHHHHH
Confidence 999997543
|
| >2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=4.3e-06 Score=82.11 Aligned_cols=123 Identities=15% Similarity=0.117 Sum_probs=96.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 152 (376)
++++|.++|+++.+.||+.|.|+.|- .++++..+++++||+.+ ++++.+...-+|+ .+
T Consensus 162 ~~e~~~~~a~~~~~~Gf~~vKik~g~----------------~~~~~~~e~v~avR~avg~d~~l~vDan~~~~----~~ 221 (393)
T 2og9_A 162 PIDQLMVNASASIERGIGGIKLKVGQ----------------PDGALDIARVTAVRKHLGDAVPLMVDANQQWD----RP 221 (393)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEECCC----------------SCHHHHHHHHHHHHHHHCTTSCEEEECTTCCC----HH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCC----------------CCHHHHHHHHHHHHHHcCCCCEEEEECCCCCC----HH
Confidence 89999999999999999999997651 24788899999999986 5788888777764 34
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcC
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAH 231 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad 231 (376)
+.++++ +.+++.|+++|.- .+++.+++..+++++.. ++||++.+.+.++++++++++ ..||
T Consensus 222 ~a~~~~-~~l~~~~i~~iE~----------------P~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~d 283 (393)
T 2og9_A 222 TAQRMC-RIFEPFNLVWIEE----------------PLDAYDHEGHAALALQF-DTPIATGEMLTSAAEHGDLIRHRAAD 283 (393)
T ss_dssp HHHHHH-HHHGGGCCSCEEC----------------CSCTTCHHHHHHHHHHC-SSCEEECTTCCSHHHHHHHHHTTCCS
T ss_pred HHHHHH-HHHHhhCCCEEEC----------------CCCcccHHHHHHHHHhC-CCCEEeCCCcCCHHHHHHHHHCCCCC
Confidence 555554 4567889998750 01223477777887765 899999999999999999998 5699
Q ss_pred eeEE
Q 017176 232 HVMV 235 (376)
Q Consensus 232 ~Vmi 235 (376)
.|++
T Consensus 284 ~v~i 287 (393)
T 2og9_A 284 YLMP 287 (393)
T ss_dssp EECC
T ss_pred EEee
Confidence 9987
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=8.3e-07 Score=81.13 Aligned_cols=81 Identities=22% Similarity=0.253 Sum_probs=63.5
Q ss_pred HHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHH
Q 017176 160 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~ 239 (376)
+.++++|+++|+++..+....+. .. .+.++++++.. ++||+++|+|.++++++.+++.|||+|.+|+++
T Consensus 38 ~~~~~~Gad~i~v~~~d~~~~~~---------~~-~~~i~~i~~~~-~ipv~v~ggi~~~~~~~~~l~~Gad~V~lg~~~ 106 (244)
T 2y88_A 38 LGWQRDGAEWIHLVDLDAAFGRG---------SN-HELLAEVVGKL-DVQVELSGGIRDDESLAAALATGCARVNVGTAA 106 (244)
T ss_dssp HHHHHTTCSEEEEEEHHHHTTSC---------CC-HHHHHHHHHHC-SSEEEEESSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred HHHHHcCCCEEEEEcCcccccCC---------Ch-HHHHHHHHHhc-CCcEEEECCCCCHHHHHHHHHcCCCEEEECchH
Confidence 34567999999998755322211 11 26677887765 899999999999999999999999999999999
Q ss_pred hhCCchhhHhhh
Q 017176 240 YQNPWYTLGHVD 251 (376)
Q Consensus 240 l~~P~lf~~~~~ 251 (376)
+.+|+++.+.++
T Consensus 107 l~~p~~~~~~~~ 118 (244)
T 2y88_A 107 LENPQWCARVIG 118 (244)
T ss_dssp HHCHHHHHHHHH
T ss_pred hhChHHHHHHHH
Confidence 999987644333
|
| >2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.5e-05 Score=78.02 Aligned_cols=124 Identities=9% Similarity=-0.022 Sum_probs=95.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 152 (376)
+++++.+.|+++.+.||+.|.|+.|+ .+++...+++++||+.+ ++++.+...-+|+ .+
T Consensus 145 ~~~~~~~~a~~~~~~Gf~~vKik~g~----------------~~~~~~~e~v~avR~a~G~~~~l~vDan~~~~----~~ 204 (389)
T 2oz8_A 145 DDDAFVSLFSHAASIGYSAFKIKVGH----------------RDFDRDLRRLELLKTCVPAGSKVMIDPNEAWT----SK 204 (389)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCC----------------SSHHHHHHHHHHHHTTSCTTCEEEEECTTCBC----HH
T ss_pred CHHHHHHHHHHHHHhCCCEEEEccCC----------------CCHHHHHHHHHHHHHhhCCCCeEEEECCCCCC----HH
Confidence 79999999999999999999999775 24567789999999987 5788888777775 34
Q ss_pred HHHHHHHHHhhc--CCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cC
Q 017176 153 QLCDFIYKVSSL--SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KG 229 (376)
Q Consensus 153 ~~~~~i~~~~e~--~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~G 229 (376)
+.++++ +.+++ .++++|. . .+++.+++..+++++...++||++.+.+ ++++++++++ ..
T Consensus 205 ~a~~~~-~~l~~~g~~i~~iE----q------------P~~~~~~~~~~~l~~~~~~iPIa~dE~~-~~~~~~~~i~~~~ 266 (389)
T 2oz8_A 205 EALTKL-VAIREAGHDLLWVE----D------------PILRHDHDGLRTLRHAVTWTQINSGEYL-DLQGKRLLLEAHA 266 (389)
T ss_dssp HHHHHH-HHHHHTTCCCSEEE----S------------CBCTTCHHHHHHHHHHCCSSEEEECTTC-CHHHHHHHHHTTC
T ss_pred HHHHHH-HHHHhcCCCceEEe----C------------CCCCcCHHHHHHHHhhCCCCCEEeCCCC-CHHHHHHHHHcCC
Confidence 555544 44667 6777653 0 1122347777777776327999999999 9999999998 56
Q ss_pred cCeeEEc
Q 017176 230 AHHVMVG 236 (376)
Q Consensus 230 ad~VmiG 236 (376)
||.|++.
T Consensus 267 ~d~v~ik 273 (389)
T 2oz8_A 267 ADILNVH 273 (389)
T ss_dssp CSEEEEC
T ss_pred CCEEEEC
Confidence 9999997
|
| >2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP} | Back alignment and structure |
|---|
Probab=98.35 E-value=7e-06 Score=80.67 Aligned_cols=123 Identities=10% Similarity=0.087 Sum_probs=96.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccH
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSY 151 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~ 151 (376)
.+++.+.+.|+++.+.||+.|.|+.|+ +++...+++++||+.+ ++++.+...-+|+ .
T Consensus 144 ~~~e~~~~~a~~~~~~Gf~~vKik~g~-----------------~~~~~~e~v~avR~a~g~d~~l~vDan~~~~----~ 202 (397)
T 2qde_A 144 GEPEAVAEEALAVLREGFHFVKLKAGG-----------------PLKADIAMVAEVRRAVGDDVDLFIDINGAWT----Y 202 (397)
T ss_dssp SCHHHHHHHHHHHHHHTCSCEEEECCS-----------------CHHHHHHHHHHHHHHHCTTSCEEEECTTCCC----H
T ss_pred CCHHHHHHHHHHHHHhhhhheeecccC-----------------CHHHHHHHHHHHHHhhCCCCEEEEECCCCCC----H
Confidence 689999999999988999999998652 4577889999999886 5788888777764 3
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCc
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGA 230 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Ga 230 (376)
++.+++ .+.+++.|+++|. . .+++.+++..+++++.. ++||++.+.+.++++++++++ ..+
T Consensus 203 ~~a~~~-~~~l~~~~i~~iE----q------------P~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~ 264 (397)
T 2qde_A 203 DQALTT-IRALEKYNLSKIE----Q------------PLPAWDLDGMARLRGKV-ATPIYADESAQELHDLLAIINKGAA 264 (397)
T ss_dssp HHHHHH-HHHHGGGCCSCEE----C------------CSCTTCHHHHHHHHTTC-SSCEEESTTCCSHHHHHHHHHHTCC
T ss_pred HHHHHH-HHHHHhCCCCEEE----C------------CCChhhHHHHHHHHhhC-CCCEEEeCCcCCHHHHHHHHHcCCC
Confidence 455554 4466788998875 1 11223477777877664 899999999999999999998 669
Q ss_pred CeeEE
Q 017176 231 HHVMV 235 (376)
Q Consensus 231 d~Vmi 235 (376)
|.|++
T Consensus 265 d~v~i 269 (397)
T 2qde_A 265 DGLMI 269 (397)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 99998
|
| >3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A | Back alignment and structure |
|---|
Probab=98.34 E-value=6.6e-06 Score=81.31 Aligned_cols=143 Identities=10% Similarity=0.057 Sum_probs=107.1
Q ss_pred CCEEEE-ecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEe
Q 017176 65 HPIVLQ-IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKC 141 (376)
Q Consensus 65 ~p~~vQ-L~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKi 141 (376)
.|+-.. +...+++.+++.|+.+.+.||+.|.|++|+... + |+ ++++...+++++||+.+ ++++.|..
T Consensus 168 v~~y~s~~~~~~~e~~~~~a~~~~~~Gf~~iKik~g~gp~-----d--g~---~~~~~die~v~avReavG~d~~L~vDa 237 (412)
T 3stp_A 168 IPVYYSKLYAGSIEAMQKEAEEAMKGGYKAFKSRFGYGPK-----D--GM---PGMRENLKRVEAVREVIGYDNDLMLEC 237 (412)
T ss_dssp EEEEEECCCSCCHHHHHHHHHHHHTTTCSEEEEECCCCGG-----G--HH---HHHHHHHHHHHHHHHHHCSSSEEEEEC
T ss_pred EEEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecccCcc-----c--cc---chHHHHHHHHHHHHHHcCCCCeEEEEC
Confidence 344444 344689999999999999999999999987521 1 32 46788889999999987 57899988
Q ss_pred cCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHH
Q 017176 142 RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE 221 (376)
Q Consensus 142 R~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~d 221 (376)
.-+|+ .++.+++ .+.+++.|+++|.- .+++.+++.++++++. .++||++.+.+.++++
T Consensus 238 N~~~~----~~~Ai~~-~~~Le~~~i~~iEe----------------P~~~~d~~~~~~l~~~-~~iPIa~dE~~~~~~~ 295 (412)
T 3stp_A 238 YMGWN----LDYAKRM-LPKLAPYEPRWLEE----------------PVIADDVAGYAELNAM-NIVPISGGEHEFSVIG 295 (412)
T ss_dssp TTCSC----HHHHHHH-HHHHGGGCCSEEEC----------------CSCTTCHHHHHHHHHT-CSSCEEECTTCCSHHH
T ss_pred CCCCC----HHHHHHH-HHHHHhcCCCEEEC----------------CCCcccHHHHHHHHhC-CCCCEEeCCCCCCHHH
Confidence 87775 3344444 45567889998851 1122347777788776 4899999999999999
Q ss_pred HHHHHH-cCcCeeEEchHH
Q 017176 222 VNAALR-KGAHHVMVGRAA 239 (376)
Q Consensus 222 a~~~l~-~Gad~VmiGRa~ 239 (376)
+.++++ ..+|.|++--+-
T Consensus 296 ~~~li~~~a~D~v~ik~~~ 314 (412)
T 3stp_A 296 CAELINRKAVSVLQYDTNR 314 (412)
T ss_dssp HHHHHHTTCCSEECCCHHH
T ss_pred HHHHHHcCCCCEEecChhh
Confidence 999998 569999874443
|
| >3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A | Back alignment and structure |
|---|
Probab=98.32 E-value=9.5e-06 Score=80.67 Aligned_cols=142 Identities=13% Similarity=0.059 Sum_probs=106.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccc-cccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCcc
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGV-SLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDS 150 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~-~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~ 150 (376)
.+++++++.|+.+.+.||+.|.++.|+|.... +|. ...++++...+++++||+.+ ++++.+...-+|+
T Consensus 145 ~~~e~~~~~a~~~~~~Gf~~iKlk~g~~~~~~-----~G~~~~~~~~~~d~e~v~avR~avG~d~~L~vDan~~~t---- 215 (433)
T 3rcy_A 145 TSADMAAESAADCVARGYTAVKFDPAGPYTLR-----GGHMPAMTDISLSVEFCRKIRAAVGDKADLLFGTHGQFT---- 215 (433)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEECCSCCCBTT-----CCBCCCHHHHHHHHHHHHHHHHHHTTSSEEEECCCSCBC----
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCcccc-----cCCCcchhhHHHHHHHHHHHHHHhCCCCeEEEeCCCCCC----
Confidence 68999999999998999999999999997531 132 12335778889999999987 5788887776665
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cC
Q 017176 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KG 229 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~G 229 (376)
.++.+++ ++.+++.|+++|.- .+++.+++.++++++.. ++||++.+.+.+++++.++++ ..
T Consensus 216 ~~~A~~~-~~~Le~~~i~~iEe----------------P~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~l~~g~ 277 (433)
T 3rcy_A 216 TAGAIRL-GQAIEPYSPLWYEE----------------PVPPDNVGAMAQVARAV-RIPVATGERLTTKAEFAPVLREGA 277 (433)
T ss_dssp HHHHHHH-HHHHGGGCCSEEEC----------------CSCTTCHHHHHHHHHHS-SSCEEECTTCCSHHHHHHHHHTTC
T ss_pred HHHHHHH-HHHhhhcCCCEEEC----------------CCChhhHHHHHHHHhcc-CCCEEecCCCCCHHHHHHHHHcCC
Confidence 3344443 45667889998851 11223477778887764 899999999999999999999 56
Q ss_pred cCeeEEchHHhhC
Q 017176 230 AHHVMVGRAAYQN 242 (376)
Q Consensus 230 ad~VmiGRa~l~~ 242 (376)
+|.|++--+-.+-
T Consensus 278 ~D~v~~d~~~~GG 290 (433)
T 3rcy_A 278 AAILQPALGRAGG 290 (433)
T ss_dssp CSEECCCHHHHTH
T ss_pred CCEEEeCchhcCC
Confidence 9999885554433
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=98.32 E-value=9.4e-06 Score=75.67 Aligned_cols=144 Identities=13% Similarity=0.094 Sum_probs=95.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 154 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~ 154 (376)
..+.-..-++.+.+.|+|.||+.+ + +|..+..+.+.+.+-+.+|++.++.+ .+|+-+-... .+.+++
T Consensus 124 ~~~~Kv~Ea~~Ai~~GAdEIDmVI-----N------ig~lk~g~~~~v~~eI~~V~~a~~~~-~lKVIlEt~~-Lt~eei 190 (288)
T 3oa3_A 124 STDQKVSEAKRAMQNGASELDMVM-----N------YPWLSEKRYTDVFQDIRAVRLAAKDA-ILKVILETSQ-LTADEI 190 (288)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEC-----C------HHHHHTTCHHHHHHHHHHHHHHTTTS-EEEEECCGGG-CCHHHH
T ss_pred cHHHHHHHHHHHHHcCCCEEEEEe-----e------hhhhcCCcHHHHHHHHHHHHHHhcCC-CceEEEECCC-CCHHHH
Confidence 344445556667788999999753 1 35555567788888889998887655 3676552211 223444
Q ss_pred HHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcC--
Q 017176 155 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAH-- 231 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad-- 231 (376)
.. ..++..++|+|+|-.+.+.. ..| + ..-+...++++++.. .+++|.++|||+|.+|+.++++.||+
T Consensus 191 ~~-A~~ia~eaGADfVKTSTGf~-~~G---A-----T~edv~lmr~~v~~~g~~v~VKAAGGIrt~edAl~mi~aGA~Ri 260 (288)
T 3oa3_A 191 IA-GCVLSSLAGADYVKTSTGFN-GPG---A-----SIENVSLMSAVCDSLQSETRVKASGGIRTIEDCVKMVRAGAERL 260 (288)
T ss_dssp HH-HHHHHHHTTCSEEECCCSSS-SCC---C-----CHHHHHHHHHHHHHSSSCCEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred HH-HHHHHHHcCCCEEEcCCCCC-CCC---C-----CHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCcee
Confidence 43 45677789999998764321 011 1 111245566666432 47999999999999999999999999
Q ss_pred eeEEchHHhh
Q 017176 232 HVMVGRAAYQ 241 (376)
Q Consensus 232 ~VmiGRa~l~ 241 (376)
|+..|+.++.
T Consensus 261 GtS~g~~I~~ 270 (288)
T 3oa3_A 261 GASAGVKIVN 270 (288)
T ss_dssp EESCHHHHHH
T ss_pred ehhhHHHHHH
Confidence 6666666553
|
| >2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=8.9e-06 Score=79.98 Aligned_cols=123 Identities=11% Similarity=0.053 Sum_probs=96.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 152 (376)
++++|.+.|+++.+.||+.|.|+.|. .+++...+++++||+.+ ++++.+...-+|+ .+
T Consensus 175 ~~e~~~~~a~~~~~~Gf~~vKik~g~----------------~~~~~d~e~v~avR~avG~d~~l~vDan~~~~----~~ 234 (398)
T 2pp0_A 175 PLDQVLKNVVISRENGIGGIKLKVGQ----------------PNCAEDIRRLTAVREALGDEFPLMVDANQQWD----RE 234 (398)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEEECCC----------------SCHHHHHHHHHHHHHHHCSSSCEEEECTTCSC----HH
T ss_pred CHHHHHHHHHHHHHhCCCeEEEecCC----------------CCHHHHHHHHHHHHHHcCCCCeEEEECCCCCC----HH
Confidence 79999999999999999999998652 35788889999999886 5788888877775 34
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcC
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAH 231 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad 231 (376)
+.++++ +.+++.|+++|.- .+++.+++..+++.+.. ++||++.+.+.++++++++++ ..+|
T Consensus 235 ~ai~~~-~~l~~~~i~~iEq----------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~d 296 (398)
T 2pp0_A 235 TAIRMG-RKMEQFNLIWIEE----------------PLDAYDIEGHAQLAAAL-DTPIATGEMLTSFREHEQLILGNASD 296 (398)
T ss_dssp HHHHHH-HHHGGGTCSCEEC----------------CSCTTCHHHHHHHHHHC-SSCEEECTTCCSHHHHHHHHHTTCCS
T ss_pred HHHHHH-HHHHHcCCceeeC----------------CCChhhHHHHHHHHhhC-CCCEEecCCcCCHHHHHHHHHcCCCC
Confidence 555554 4467889987651 11223477777887765 899999999999999999998 5689
Q ss_pred eeEE
Q 017176 232 HVMV 235 (376)
Q Consensus 232 ~Vmi 235 (376)
.|++
T Consensus 297 ~v~i 300 (398)
T 2pp0_A 297 FVQP 300 (398)
T ss_dssp EECC
T ss_pred EEEe
Confidence 9887
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=98.31 E-value=1e-06 Score=80.56 Aligned_cols=81 Identities=21% Similarity=0.255 Sum_probs=63.5
Q ss_pred HHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHH
Q 017176 160 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~ 239 (376)
+.++++|+|+|+++..+....+. ... +.++++++.. ++||+++|+|.++++++.+++.|||+|.+|+.+
T Consensus 39 ~~~~~~Gad~i~v~~~d~~~~~~---------~~~-~~i~~i~~~~-~ipv~v~ggI~~~~~~~~~l~~Gad~V~lg~~~ 107 (244)
T 1vzw_A 39 LAWQRSGAEWLHLVDLDAAFGTG---------DNR-ALIAEVAQAM-DIKVELSGGIRDDDTLAAALATGCTRVNLGTAA 107 (244)
T ss_dssp HHHHHTTCSEEEEEEHHHHHTSC---------CCH-HHHHHHHHHC-SSEEEEESSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred HHHHHcCCCEEEEecCchhhcCC---------ChH-HHHHHHHHhc-CCcEEEECCcCCHHHHHHHHHcCCCEEEECchH
Confidence 45567999999998754322221 112 6677777765 899999999999999999999999999999999
Q ss_pred hhCCchhhHhhh
Q 017176 240 YQNPWYTLGHVD 251 (376)
Q Consensus 240 l~~P~lf~~~~~ 251 (376)
+.||+++.+.++
T Consensus 108 l~~p~~~~~~~~ 119 (244)
T 1vzw_A 108 LETPEWVAKVIA 119 (244)
T ss_dssp HHCHHHHHHHHH
T ss_pred hhCHHHHHHHHH
Confidence 999987654433
|
| >2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.31 E-value=9.3e-06 Score=80.00 Aligned_cols=135 Identities=13% Similarity=0.044 Sum_probs=100.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecC------CCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCC
Q 017176 75 NLDNLAKATELANAYNYDEINLNC------GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVD 146 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~------gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~ 146 (376)
++++|.++|+++.+.||+.|.|+. |+.... ...|....++++...+++++||+.+ ++++.+...-+|+
T Consensus 152 ~~~~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~s----~~~~~~~~~~~~~~~e~v~avR~a~G~d~~l~vDan~~~~ 227 (407)
T 2o56_A 152 EPEQYAQAALTAVSEGYDAIKVDTVAMDRHGNWNQQ----NLNGPLTDKILRLGYDRMAAIRDAVGPDVDIIAEMHAFTD 227 (407)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCSSBCTTSCBSCS----CCCSSCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSC
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcccccCCcCccccC----cccCCCchhHHHHHHHHHHHHHHhcCCCCEEEEECCCCCC
Confidence 899999999999999999999986 543110 1112222356788999999999977 5788888776664
Q ss_pred CCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHH
Q 017176 147 DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL 226 (376)
Q Consensus 147 ~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l 226 (376)
.++.++++ +.+++.|+++|.- .+++.+++..+++++.. ++||++.+.+.+++++++++
T Consensus 228 ----~~~a~~~~-~~l~~~~i~~iE~----------------P~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i 285 (407)
T 2o56_A 228 ----TTSAIQFG-RMIEELGIFYYEE----------------PVMPLNPAQMKQVADKV-NIPLAAGERIYWRWGYRPFL 285 (407)
T ss_dssp ----HHHHHHHH-HHHGGGCCSCEEC----------------SSCSSSHHHHHHHHHHC-CSCEEECTTCCHHHHHHHHH
T ss_pred ----HHHHHHHH-HHHHhcCCCEEeC----------------CCChhhHHHHHHHHHhC-CCCEEeCCCcCCHHHHHHHH
Confidence 44555553 4567899988751 11223477778887765 89999999999999999999
Q ss_pred H-cCcCeeEE
Q 017176 227 R-KGAHHVMV 235 (376)
Q Consensus 227 ~-~Gad~Vmi 235 (376)
+ ..+|.|++
T Consensus 286 ~~~~~d~v~i 295 (407)
T 2o56_A 286 ENGSLSVIQP 295 (407)
T ss_dssp HTTCCSEECC
T ss_pred HcCCCCEEec
Confidence 8 56899887
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=4.9e-06 Score=84.00 Aligned_cols=125 Identities=14% Similarity=0.150 Sum_probs=77.6
Q ss_pred HHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHH
Q 017176 81 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 160 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~ 160 (376)
+.+..+.+.|.|.+-+.. ..|. .....+.++.+++..++|+.+|--. +.+. ++
T Consensus 231 ~~a~~l~~~gvd~lvvdt--------a~G~--------~~~~L~~I~~l~~~~~vpvi~k~v~------~~~~-----a~ 283 (486)
T 2cu0_A 231 KRAIELDKAGVDVIVVDT--------AHAH--------NLKAIKSMKEMRQKVDADFIVGNIA------NPKA-----VD 283 (486)
T ss_dssp HHHHHHHHTTCSEEEEEC--------SCCC--------CHHHHHHHHHHHHTCCSEEEEEEEC------CHHH-----HT
T ss_pred HHHHHHHHhcCCceEEEe--------cCCc--------EeehhhHHHHHHHHhCCccccCCcC------CHHH-----HH
Confidence 445666677877765431 0111 1234556677777778899877222 1222 12
Q ss_pred HhhcCCccEEEEccCccc-------cCCCCCCCCCCCCcc-cHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCe
Q 017176 161 VSSLSPTRHFIIHSRKAL-------LNGISPAENRTIPPL-KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH 232 (376)
Q Consensus 161 ~~e~~Gvd~I~vh~r~~~-------~~g~~~~~~~~~~~~-~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~ 232 (376)
.+. |+|.|.| |.... ..|. ..+.. ....+.++.++. ++|||+.|||.+..|+.+++..|||+
T Consensus 284 ~l~--G~d~v~v-g~g~g~~~~~r~~~~~------g~~~~~~l~~~~~~~~~~-~vpVia~GGi~~~~di~kalalGA~~ 353 (486)
T 2cu0_A 284 DLT--FADAVKV-GIGPGSICTTRIVAGV------GVPQITAVAMVADRAQEY-GLYVIADGGIRYSGDIVKAIAAGADA 353 (486)
T ss_dssp TCT--TSSEEEE-CSSCSTTBCHHHHTCC------CCCHHHHHHHHHHHHHHH-TCEEEEESCCCSHHHHHHHHHTTCSE
T ss_pred Hhh--CCCeEEE-eeeeccceeeeEEeec------CcchHHHHHHHHHHHHHc-CCcEEecCCCCCHHHHHHHHHcCCCc
Confidence 222 9999999 22110 0111 01111 133445555554 79999999999999999999999999
Q ss_pred eEEchHHhhC
Q 017176 233 VMVGRAAYQN 242 (376)
Q Consensus 233 VmiGRa~l~~ 242 (376)
||+|+.++..
T Consensus 354 v~~g~~~~~~ 363 (486)
T 2cu0_A 354 VMLGNLLAGT 363 (486)
T ss_dssp EEESTTTTTB
T ss_pred eeeChhhhcC
Confidence 9999999864
|
| >3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A | Back alignment and structure |
|---|
Probab=98.27 E-value=3.2e-05 Score=70.00 Aligned_cols=54 Identities=20% Similarity=0.207 Sum_probs=47.4
Q ss_pred cHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchhhH
Q 017176 194 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLG 248 (376)
Q Consensus 194 ~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~ 248 (376)
+.+.++++++...++||+.-|||+|++++++++ .|||+|.+|+++..||.++.+
T Consensus 167 ~~~~i~~i~~~~~~~Pv~vGGGI~t~e~a~~~~-~gAD~VVVGSa~v~~p~~~~~ 220 (228)
T 3vzx_A 167 DIEAVKKTKAVLETSTLFYGGGIKDAETAKQYA-EHADVIVVGNAVYEDFDRALK 220 (228)
T ss_dssp CHHHHHHHHHHCSSSEEEEESSCCSHHHHHHHH-TTCSEEEECTHHHHCHHHHHH
T ss_pred CHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHH-hCCCEEEEChHHhcCHHHHHH
Confidence 478888888764379999999999999999998 599999999999999998643
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=3e-06 Score=85.91 Aligned_cols=134 Identities=13% Similarity=0.056 Sum_probs=80.8
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-C-ccEEEEecCCCCCCccHHHHHHH
Q 017176 80 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-N-VPVSVKCRIGVDDHDSYNQLCDF 157 (376)
Q Consensus 80 ~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~-~pv~vKiR~g~~~~~~~~~~~~~ 157 (376)
.+.++.+.+.|.+.+.++... | ++..+.+.++.+++.. + .|+.++.-. +.++.
T Consensus 244 ~e~~~~l~e~gv~~l~Vd~~~-----------g-----~~~~~~~~i~~lk~~~~~~~~Vi~G~V~------t~~~a--- 298 (503)
T 1me8_A 244 RERVPALVEAGADVLCIDSSD-----------G-----FSEWQKITIGWIREKYGDKVKVGAGNIV------DGEGF--- 298 (503)
T ss_dssp HHHHHHHHHHTCSEEEECCSC-----------C-----CSHHHHHHHHHHHHHHGGGSCEEEEEEC------SHHHH---
T ss_pred HHHHHHHHhhhccceEEeccc-----------C-----cccchhhHHHHHHHhCCCCceEeecccc------CHHHH---
Confidence 344566666688888775421 1 1233556667777765 4 788775433 22222
Q ss_pred HHHHhhcCCccEEEEccCccccCCCCC-CCCCCCCcccHHHHHHHHhhCC--------CCeEEEecCCCCHHHHHHHHHc
Q 017176 158 IYKVSSLSPTRHFIIHSRKALLNGISP-AENRTIPPLKYEYYYALLRDFP--------DLTFTLNGGINTVDEVNAALRK 228 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh~r~~~~~g~~~-~~~~~~~~~~~~~v~~~~~~~~--------~ipVi~nGgI~s~~da~~~l~~ 228 (376)
+.+.++|+|+|.| |.......... .....++ ....+.++.+... ++|||+.|||.++.|+.++++.
T Consensus 299 --~~l~~aGad~I~V-g~~~g~~~~~r~~~~~g~p--~~~~l~~v~~~~~~~~~~~~~~ipvia~GGi~~~~di~kAlal 373 (503)
T 1me8_A 299 --RYLADAGADFIKI-GIGGGSICITREQKGIGRG--QATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAM 373 (503)
T ss_dssp --HHHHHHTCSEEEE-CSSCSTTCCSTTTTCCCCC--HHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHT
T ss_pred --HHHHHhCCCeEEe-cccCCcCcccccccCCCCc--hHHHHHHHHHHHHHHhhhcCCCceEEEeCCCCCHHHHHHHHHc
Confidence 1234689999998 33210000000 0000112 2444444443221 5999999999999999999999
Q ss_pred CcCeeEEchHHhhCC
Q 017176 229 GAHHVMVGRAAYQNP 243 (376)
Q Consensus 229 Gad~VmiGRa~l~~P 243 (376)
|||+||+||.++...
T Consensus 374 GA~~V~iG~~~~~~~ 388 (503)
T 1me8_A 374 GADFIMLGRYFARFE 388 (503)
T ss_dssp TCSEEEESHHHHTBT
T ss_pred CCCEEEECchhhccc
Confidence 999999999998653
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=98.24 E-value=3.1e-05 Score=70.99 Aligned_cols=146 Identities=12% Similarity=0.248 Sum_probs=92.5
Q ss_pred CCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcc-cCccEEEEecC
Q 017176 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVSVKCRI 143 (376)
Q Consensus 65 ~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~-~~~pv~vKiR~ 143 (376)
.++-+|+.|.-. . .+.++.+-++|+|-|-|| +...++|+++.++.+..-.. +-+-+.+|..-
T Consensus 74 ~~~pl~vGGGIr-s-~e~~~~~l~~GadkVii~---------------t~a~~~p~li~e~~~~~g~q~iv~~iD~~~~~ 136 (243)
T 4gj1_A 74 VSVNLQVGGGIR-S-KEEVKALLDCGVKRVVIG---------------SMAIKDATLCLEILKEFGSEAIVLALDTILKE 136 (243)
T ss_dssp CCSEEEEESSCC-C-HHHHHHHHHTTCSEEEEC---------------TTTTTCHHHHHHHHHHHCTTTEEEEEEEEESS
T ss_pred cCCCeEeccccc-c-HHHHHHHHHcCCCEEEEc---------------cccccCCchHHHHHhcccCceEEEEEEEEeCC
Confidence 345688877421 1 134455667899988775 33457899999998887432 22223333222
Q ss_pred -------CCCCCc--cHHHHHHHHHHHhhcCCccEEEEcc--CccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE
Q 017176 144 -------GVDDHD--SYNQLCDFIYKVSSLSPTRHFIIHS--RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL 212 (376)
Q Consensus 144 -------g~~~~~--~~~~~~~~i~~~~e~~Gvd~I~vh~--r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~ 212 (376)
||.+.. +..+.+ +.+++.|+..|.++. |.....|. +.+.+..+.+.++++|||+
T Consensus 137 ~~~v~~~gw~~~~~~~~~~~~----~~~~~~g~~eil~t~Id~DGt~~G~-----------d~~l~~~l~~~~~~ipvia 201 (243)
T 4gj1_A 137 DYVVAVNAWQEASDKKLMEVL----DFYSNKGLKHILCTDISKDGTMQGV-----------NVRLYKLIHEIFPNICIQA 201 (243)
T ss_dssp SEEEC--------CCBHHHHH----HHHHTTTCCEEEEEETTC-----CC-----------CHHHHHHHHHHCTTSEEEE
T ss_pred CCEEEecCceecccchHHHHH----HHHhhcCCcEEEeeeecccccccCC-----------CHHHHHHHHHhcCCCCEEE
Confidence 454432 233433 234679999999984 33344442 3778888887777899999
Q ss_pred ecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017176 213 NGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 213 nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
+||+.+.+|+.++ +.++++|.+|++++..-
T Consensus 202 sGGv~~~~Dl~~l-~~~~~gvivg~Al~~g~ 231 (243)
T 4gj1_A 202 SGGVASLKDLENL-KGICSGVIVGKALLDGV 231 (243)
T ss_dssp ESCCCSHHHHHHT-TTTCSEEEECHHHHTTS
T ss_pred EcCCCCHHHHHHH-HccCchhehHHHHHCCC
Confidence 9999999999875 56799999999986553
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=1.8e-06 Score=78.69 Aligned_cols=79 Identities=18% Similarity=0.212 Sum_probs=62.0
Q ss_pred HHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHH
Q 017176 160 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~ 239 (376)
+.+++.|+|+|+++.......+ .+..++.+.++++.. ++||+++|+|.++++++++++.|||+|++|+.+
T Consensus 40 ~~~~~~G~d~i~v~~~~~~~~~---------~~~~~~~i~~i~~~~-~ipvi~~g~i~~~~~~~~~~~~Gad~V~i~~~~ 109 (253)
T 1h5y_A 40 VRYEEEGADEIAILDITAAPEG---------RATFIDSVKRVAEAV-SIPVLVGGGVRSLEDATTLFRAGADKVSVNTAA 109 (253)
T ss_dssp HHHHHTTCSCEEEEECCCCTTT---------HHHHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHH
T ss_pred HHHHHcCCCEEEEEeCCccccC---------CcccHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEChHH
Confidence 4456899999999864421100 112356777877765 899999999999999999999999999999999
Q ss_pred hhCCchhhH
Q 017176 240 YQNPWYTLG 248 (376)
Q Consensus 240 l~~P~lf~~ 248 (376)
+.+|+++.+
T Consensus 110 ~~~~~~~~~ 118 (253)
T 1h5y_A 110 VRNPQLVAL 118 (253)
T ss_dssp HHCTHHHHH
T ss_pred hhCcHHHHH
Confidence 999997644
|
| >3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=98.23 E-value=7.7e-06 Score=79.79 Aligned_cols=126 Identities=11% Similarity=0.047 Sum_probs=98.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 152 (376)
+++++++.|+.+.+.||+.|.|+.||+ | .+++...+++++||+.+ ++++.+...-+|++ .+
T Consensus 146 ~~e~~~~~a~~~~~~Gf~~iKlk~g~~----------g----~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~d---~~ 208 (374)
T 3sjn_A 146 KPEDNVAIVQGLKDQGFSSIKFGGGVM----------G----DDPDTDYAIVKAVREAAGPEMEVQIDLASKWHT---CG 208 (374)
T ss_dssp SGGGGHHHHHHHHTTTCSEEEEECTTT----------T----SCHHHHHHHHHHHHHHHCSSSEEEEECTTTTCS---HH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCCC----------C----CCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCC---HH
Confidence 348999999999999999999998875 2 24788889999999986 67899998888873 33
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcC
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAH 231 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad 231 (376)
+.+++ .+.+++.|+++|. . .+++.+++..+++++.. ++||++.+.+.+++++.++++ ..+|
T Consensus 209 ~A~~~-~~~l~~~~i~~iE----q------------P~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~l~~~~~d 270 (374)
T 3sjn_A 209 HSAMM-AKRLEEFNLNWIE----E------------PVLADSLISYEKLSRQV-SQKIAGGESLTTRYEFQEFITKSNAD 270 (374)
T ss_dssp HHHHH-HHHSGGGCCSEEE----C------------SSCTTCHHHHHHHHHHC-SSEEEECTTCCHHHHHHHHHHHHCCS
T ss_pred HHHHH-HHHhhhcCceEEE----C------------CCCcccHHHHHHHHhhC-CCCEEeCCCcCCHHHHHHHHHcCCCC
Confidence 44443 4566788999885 1 11223477777887764 899999999999999999998 6799
Q ss_pred eeEE
Q 017176 232 HVMV 235 (376)
Q Consensus 232 ~Vmi 235 (376)
.|++
T Consensus 271 ~v~~ 274 (374)
T 3sjn_A 271 IVQP 274 (374)
T ss_dssp EECC
T ss_pred EEEe
Confidence 9887
|
| >2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1.6e-05 Score=77.71 Aligned_cols=124 Identities=8% Similarity=0.040 Sum_probs=96.1
Q ss_pred CCH---HHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCC
Q 017176 74 SNL---DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDH 148 (376)
Q Consensus 74 ~~~---~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~ 148 (376)
.++ +.+++.|+++.+.||+.|.|+.|+ .+++...+++++||+.+ ++++.+...-+|+
T Consensus 135 ~~~~~~e~~~~~a~~~~~~Gf~~vKik~g~----------------~~~~~d~e~v~avR~a~G~d~~l~vDan~~~~-- 196 (382)
T 2gdq_A 135 DSPQWISRSVSNVEAQLKKGFEQIKVKIGG----------------TSFKEDVRHINALQHTAGSSITMILDANQSYD-- 196 (382)
T ss_dssp SSTTHHHHHHHHHHHHHTTTCCEEEEECSS----------------SCHHHHHHHHHHHHHHHCTTSEEEEECTTCCC--
T ss_pred CCcccHHHHHHHHHHHHHcCCCEEEEcCCC----------------CCHHHHHHHHHHHHHhhCCCCEEEEECCCCCC--
Confidence 578 999999999999999999998765 14678889999999887 5788888877775
Q ss_pred ccHHHHHHHHHHHhhcC-CccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH
Q 017176 149 DSYNQLCDFIYKVSSLS-PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR 227 (376)
Q Consensus 149 ~~~~~~~~~i~~~~e~~-Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~ 227 (376)
.++.++++ +.+++. |+++|. . .+++.+++..+++++.. ++||++.+.+.++++++++++
T Consensus 197 --~~~a~~~~-~~l~~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~ 256 (382)
T 2gdq_A 197 --AAAAFKWE-RYFSEWTNIGWLE----E------------PLPFDQPQDYAMLRSRL-SVPVAGGENMKGPAQYVPLLS 256 (382)
T ss_dssp --HHHHHTTH-HHHTTCSCEEEEE----C------------CSCSSCHHHHHHHHTTC-SSCEEECTTCCSHHHHHHHHH
T ss_pred --HHHHHHHH-HHHhhccCCeEEE----C------------CCCcccHHHHHHHHhhC-CCCEEecCCcCCHHHHHHHHH
Confidence 34555543 456778 888765 1 01223477777777664 899999999999999999998
Q ss_pred -cCcCeeEE
Q 017176 228 -KGAHHVMV 235 (376)
Q Consensus 228 -~Gad~Vmi 235 (376)
..+|.|++
T Consensus 257 ~~~~d~v~i 265 (382)
T 2gdq_A 257 QRCLDIIQP 265 (382)
T ss_dssp TTCCSEECC
T ss_pred cCCCCEEec
Confidence 56899887
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=98.22 E-value=1.2e-05 Score=74.93 Aligned_cols=171 Identities=15% Similarity=0.098 Sum_probs=96.6
Q ss_pred CCEEEEecCC--CHHHHHHHHHHHHHCCCCEEEecCC--CCCcc---ccC----CCCccccccCCHHHHHHHHHHHhcc-
Q 017176 65 HPIVLQIGGS--NLDNLAKATELANAYNYDEINLNCG--CPSPK---VAG----HGCFGVSLMLDPKFVGEAMSVIAAN- 132 (376)
Q Consensus 65 ~p~~vQL~g~--~~~~~~~aa~~~~~~G~d~IeiN~g--cP~~~---v~r----~g~yG~~l~~~~~~~~eiv~~v~~~- 132 (376)
..++.=|... +.+...+.++.+.++|+|.|||..= -|... +.+ .=..| -+.+.+.++++++|+.
T Consensus 20 ~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G----~~~~~~~~~v~~~r~~~ 95 (271)
T 3nav_A 20 GAFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAK----TTPDICFELIAQIRARN 95 (271)
T ss_dssp CEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTT----CCHHHHHHHHHHHHHHC
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHhcC
Confidence 3455555443 5688999999999999999999752 22210 000 00002 3567888999999986
Q ss_pred cCccEEEEecCCCCCCccHHHHHH---------------------HHHHHhhcCCccEEEE-ccCcc-------------
Q 017176 133 TNVPVSVKCRIGVDDHDSYNQLCD---------------------FIYKVSSLSPTRHFII-HSRKA------------- 177 (376)
Q Consensus 133 ~~~pv~vKiR~g~~~~~~~~~~~~---------------------~i~~~~e~~Gvd~I~v-h~r~~------------- 177 (376)
+++|+.+-.-.+.-....+++.++ .+...+.+.|++.|.+ ...+.
T Consensus 96 ~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~~~g 175 (271)
T 3nav_A 96 PETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLGKG 175 (271)
T ss_dssp TTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHHCCS
T ss_pred CCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHHCCC
Confidence 788987742110000000111111 1122334455554422 11110
Q ss_pred -c----cCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017176 178 -L----LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 178 -~----~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
. ..|..+.. ...++...+.+.++++. .++||+..+||.+++++.+.+..|||+|.+|+++..
T Consensus 176 fiY~vs~~GvTG~~-~~~~~~~~~~v~~vr~~-~~~Pv~vGfGIst~e~~~~~~~~gADgvIVGSAiv~ 242 (271)
T 3nav_A 176 YTYLLSRAGVTGAE-TKANMPVHALLERLQQF-DAPPALLGFGISEPAQVKQAIEAGAAGAISGSAVVK 242 (271)
T ss_dssp CEEECCCC---------CCHHHHHHHHHHHHT-TCCCEEECSSCCSHHHHHHHHHTTCSEEEESHHHHH
T ss_pred eEEEEeccCCCCcc-cCCchhHHHHHHHHHHh-cCCCEEEECCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 0 01222221 11222124566666654 489999999999999999899999999999999863
|
| >1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.8e-05 Score=77.60 Aligned_cols=123 Identities=11% Similarity=0.093 Sum_probs=95.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 152 (376)
+++.+.+.|+.+.+.||+.|.|+.|++ +++...+++++||+.+ ++++.+...-+|+ .+
T Consensus 165 ~~~~~~~~a~~~~~~Gf~~iKik~g~~----------------~~~~~~e~v~avr~a~g~~~~l~vDan~~~~----~~ 224 (392)
T 1tzz_A 165 GLSMLRGEMRGYLDRGYNVVKMKIGGA----------------PIEEDRMRIEAVLEEIGKDAQLAVDANGRFN----LE 224 (392)
T ss_dssp CHHHHHHHHHHHHTTTCSEEEEECSSS----------------CHHHHHHHHHHHHHHHTTTCEEEEECTTCCC----HH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCC----------------CHHHHHHHHHHHHHhcCCCCeEEEECCCCCC----HH
Confidence 799999999999999999999997751 3577788999999876 5788888777775 34
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHc----
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK---- 228 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~---- 228 (376)
+.+++ .+.+++.|+++|. . .+++.+++..+++++.. ++||++.+.+.++++++++++.
T Consensus 225 ~a~~~-~~~l~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~~ 286 (392)
T 1tzz_A 225 TGIAY-AKMLRDYPLFWYE----E------------VGDPLDYALQAALAEFY-PGPMATGENLFSHQDARNLLRYGGMR 286 (392)
T ss_dssp HHHHH-HHHHTTSCCSEEE----C------------CSCTTCHHHHHHHTTTC-CSCEEECTTCCSHHHHHHHHHHSCCC
T ss_pred HHHHH-HHHHHHcCCCeec----C------------CCChhhHHHHHHHHhhC-CCCEEECCCCCCHHHHHHHHHcCCCc
Confidence 55555 3456789999875 1 01223477777777654 8999999999999999999984
Q ss_pred -CcCeeEE
Q 017176 229 -GAHHVMV 235 (376)
Q Consensus 229 -Gad~Vmi 235 (376)
.+|.|++
T Consensus 287 ~~~d~v~i 294 (392)
T 1tzz_A 287 PDRDWLQF 294 (392)
T ss_dssp TTTCEECC
T ss_pred cCCcEEEE
Confidence 5999887
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=98.20 E-value=1.7e-05 Score=70.67 Aligned_cols=143 Identities=12% Similarity=0.035 Sum_probs=91.2
Q ss_pred CCCEEEEecCCC-HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017176 64 QHPIVLQIGGSN-LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 64 ~~p~~vQL~g~~-~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
+.|+.+.+.-.+ ++.+ ++.+.++|+|+|-++...+ .+.+.++++.+++. +.++.+-+.
T Consensus 53 ~~~i~~~~~~~~~~~~~---~~~~~~~Gad~v~v~~~~~-----------------~~~~~~~~~~~~~~-g~~~~v~~~ 111 (211)
T 3f4w_A 53 HKEVLADAKIMDGGHFE---SQLLFDAGADYVTVLGVTD-----------------VLTIQSCIRAAKEA-GKQVVVDMI 111 (211)
T ss_dssp TSEEEEEEEECSCHHHH---HHHHHHTTCSEEEEETTSC-----------------HHHHHHHHHHHHHH-TCEEEEECT
T ss_pred CCEEEEEEEeccchHHH---HHHHHhcCCCEEEEeCCCC-----------------hhHHHHHHHHHHHc-CCeEEEEec
Confidence 567877765444 3332 5667789999999964211 13345566665543 555554321
Q ss_pred CCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHH
Q 017176 143 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 222 (376)
Q Consensus 143 ~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da 222 (376)
. . .+..+.+ .. +.+.|+|+|.++.+...+.. .+..++.+.++++..+++||++.|||+ ++++
T Consensus 112 ~-~---~t~~~~~---~~-~~~~g~d~i~v~~g~~g~~~---------~~~~~~~i~~l~~~~~~~~i~~~gGI~-~~~~ 173 (211)
T 3f4w_A 112 C-V---DDLPARV---RL-LEEAGADMLAVHTGTDQQAA---------GRKPIDDLITMLKVRRKARIAVAGGIS-SQTV 173 (211)
T ss_dssp T-C---SSHHHHH---HH-HHHHTCCEEEEECCHHHHHT---------TCCSHHHHHHHHHHCSSCEEEEESSCC-TTTH
T ss_pred C-C---CCHHHHH---HH-HHHcCCCEEEEcCCCccccc---------CCCCHHHHHHHHHHcCCCcEEEECCCC-HHHH
Confidence 1 1 2222222 22 33679999998754221110 011267777877766689999999995 9999
Q ss_pred HHHHHcCcCeeEEchHHhhCCch
Q 017176 223 NAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 223 ~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
.++++.|||+|.+||+++..+..
T Consensus 174 ~~~~~~Gad~vvvGsai~~~~d~ 196 (211)
T 3f4w_A 174 KDYALLGPDVVIVGSAITHAADP 196 (211)
T ss_dssp HHHHTTCCSEEEECHHHHTCSSH
T ss_pred HHHHHcCCCEEEECHHHcCCCCH
Confidence 99999999999999999877653
|
| >3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A | Back alignment and structure |
|---|
Probab=98.19 E-value=1.5e-05 Score=72.15 Aligned_cols=144 Identities=19% Similarity=0.159 Sum_probs=92.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCC---ccH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH---DSY 151 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~---~~~ 151 (376)
..+.-+.-++.+.+.|+|.||+.+ + +|.-+..+.+.+.+-+.++++.++ ...+|+-+-.... .+-
T Consensus 78 ~~~~K~~E~~~Ai~~GAdEIDmVi-----n------ig~lk~g~~~~v~~ei~~v~~a~~-~~~lKvIiEt~~L~~~~t~ 145 (231)
T 3ndo_A 78 VPGIKATEAELAVAAGATEIDMVI-----D------VGAALAGDLDAVSADITAVRKAVR-AATLKVIVESAALLEFSGE 145 (231)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEC-----C------HHHHHTTCHHHHHHHHHHHHHHTT-TSEEEEECCHHHHHHHTCH
T ss_pred cHHHHHHHHHHHHHcCCCEEEEEe-----e------hHhhhcccHHHHHHHHHHHHHHcc-CCceEEEEECcccCCCCCH
Confidence 344445556677788999999964 1 465556778888888899888874 2345655421110 122
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcC
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH 231 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad 231 (376)
++. ....++..++|+|+|-.+.+.....| +. .-+...+++... .+++|-++|||+|.+++.++++.||+
T Consensus 146 eei-~~a~~ia~~aGADfVKTSTGf~~~~g---At-----~edv~lm~~~v~--~~v~VKaaGGIrt~~~a~~~i~aGa~ 214 (231)
T 3ndo_A 146 PLL-ADVCRVARDAGADFVKTSTGFHPSGG---AS-----VQAVEIMARTVG--ERLGVKASGGIRTAEQAAAMLDAGAT 214 (231)
T ss_dssp HHH-HHHHHHHHHTTCSEEECCCSCCTTCS---CC-----HHHHHHHHHHHT--TTSEEEEESSCCSHHHHHHHHHTTCS
T ss_pred HHH-HHHHHHHHHHCcCEEEcCCCCCCCCC---CC-----HHHHHHHHHHhC--CCceEEEeCCCCCHHHHHHHHHhcch
Confidence 333 33456777899999986644210111 10 111333444443 37999999999999999999999999
Q ss_pred --eeEEchHHhh
Q 017176 232 --HVMVGRAAYQ 241 (376)
Q Consensus 232 --~VmiGRa~l~ 241 (376)
|+..|+.++.
T Consensus 215 RiGtS~g~~I~~ 226 (231)
T 3ndo_A 215 RLGLSGSRAVLD 226 (231)
T ss_dssp EEEESSHHHHHH
T ss_pred hcccchHHHHHh
Confidence 7777766653
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=98.17 E-value=3.6e-06 Score=75.42 Aligned_cols=148 Identities=13% Similarity=0.093 Sum_probs=96.4
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccc--------cCCCCccccccCCHHHHHHHHH--------
Q 017176 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKV--------AGHGCFGVSLMLDPKFVGEAMS-------- 127 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v--------~r~g~yG~~l~~~~~~~~eiv~-------- 127 (376)
..|++.-+.+.+++++.+.++.+.+.|++.|+++.-+|...- ...-.+|. ++ ..+.+...++
T Consensus 12 ~~~ii~vi~~~~~~~~~~~~~~l~~gGv~~iel~~k~~~~~~~i~~~~~~~~~~gag~-vl-~~d~~~~A~~~GAd~v~~ 89 (207)
T 2yw3_A 12 ESRLLPLLTVRGGEDLLGLARVLEEEGVGALEITLRTEKGLEALKALRKSGLLLGAGT-VR-SPKEAEAALEAGAAFLVS 89 (207)
T ss_dssp HHCEEEEECCCSCCCHHHHHHHHHHTTCCEEEEECSSTHHHHHHHHHTTSSCEEEEES-CC-SHHHHHHHHHHTCSEEEE
T ss_pred hCCEEEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHhCCCCEEEeCe-Ee-eHHHHHHHHHcCCCEEEc
Confidence 357888888888888888999898999999999987774310 00112233 22 3333332222
Q ss_pred ---------HHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHH
Q 017176 128 ---------VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY 198 (376)
Q Consensus 128 ---------~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v 198 (376)
..++ .+.|+.. |. .+..+..+ +.+.|+|+|.+++... .. ..+++
T Consensus 90 ~~~d~~v~~~~~~-~g~~~i~----G~---~t~~e~~~-----A~~~Gad~v~~fpa~~-~g-------------G~~~l 142 (207)
T 2yw3_A 90 PGLLEEVAALAQA-RGVPYLP----GV---LTPTEVER-----ALALGLSALKFFPAEP-FQ-------------GVRVL 142 (207)
T ss_dssp SSCCHHHHHHHHH-HTCCEEE----EE---CSHHHHHH-----HHHTTCCEEEETTTTT-TT-------------HHHHH
T ss_pred CCCCHHHHHHHHH-hCCCEEe----cC---CCHHHHHH-----HHHCCCCEEEEecCcc-cc-------------CHHHH
Confidence 2221 2334333 21 12334322 2357999999975210 00 14667
Q ss_pred HHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017176 199 YALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 199 ~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
++++..++++||++.|||+ .+++.+.++.|+++|.+|++++.
T Consensus 143 k~l~~~~~~ipvvaiGGI~-~~n~~~~l~aGa~~vavgSai~~ 184 (207)
T 2yw3_A 143 RAYAEVFPEVRFLPTGGIK-EEHLPHYAALPNLLAVGGSWLLQ 184 (207)
T ss_dssp HHHHHHCTTCEEEEBSSCC-GGGHHHHHTCSSBSCEEESGGGS
T ss_pred HHHHhhCCCCcEEEeCCCC-HHHHHHHHhCCCcEEEEehhhhC
Confidence 7777777789999999996 79999999999999999999876
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=98.17 E-value=3.1e-05 Score=70.29 Aligned_cols=156 Identities=17% Similarity=0.215 Sum_probs=101.0
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHCCCC--EEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcc--cCccEEEEe
Q 017176 66 PIVLQIGGSNLDNLAKATELANAYNYD--EINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN--TNVPVSVKC 141 (376)
Q Consensus 66 p~~vQL~g~~~~~~~~aa~~~~~~G~d--~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~--~~~pv~vKi 141 (376)
.+...|...|...+.+..+.++++|.| .+|+--|.-+++.. || -++++++|+. .++|+.+++
T Consensus 6 ~i~psil~~D~~~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn~~----~G----------~~~v~~ir~~~~~~~~~dvhL 71 (228)
T 3ovp_A 6 KIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNIT----FG----------HPVVESLRKQLGQDPFFDMHM 71 (228)
T ss_dssp EEEEBCTTSCGGGHHHHHHHHHHTTCSCEEEEEEBSSSSSCBC----BC----------HHHHHHHHHHHCSSSCEEEEE
T ss_pred EeeeeheeCCchhHHHHHHHHHHcCCCEEEEEecCCCcCcccc----cC----------HHHHHHHHHhhCCCCcEEEEE
Confidence 467788888888899999999999988 45555454343321 46 2466777766 477888877
Q ss_pred cCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccc-----------cC---C------CC------------------
Q 017176 142 RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL-----------LN---G------IS------------------ 183 (376)
Q Consensus 142 R~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~-----------~~---g------~~------------------ 183 (376)
-. .+...+ ++ . +.++|+|.|++|.-... ++ | +.
T Consensus 72 mv--~~p~~~---i~---~-~~~aGad~itvH~Ea~~~~~~~i~~i~~~G~k~gval~p~t~~e~l~~~l~~~D~Vl~ms 142 (228)
T 3ovp_A 72 MV--SKPEQW---VK---P-MAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMT 142 (228)
T ss_dssp EC--SCGGGG---HH---H-HHHHTCSEEEEEGGGCSCHHHHHHHHHHTTCEEEEEECTTSCGGGTGGGGGGCSEEEEES
T ss_pred Ee--CCHHHH---HH---H-HHHcCCCEEEEccCCchhHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHhccCCeEEEee
Confidence 65 332222 11 1 22578899888853100 00 0 00
Q ss_pred ---CCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 184 ---PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 184 ---~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
+..+...-+..++.++++++...+++|.+.||| +++.+.++.+.|||.+.+||++...++.
T Consensus 143 v~pGf~Gq~f~~~~l~ki~~lr~~~~~~~I~VdGGI-~~~t~~~~~~aGAd~~VvGsaIf~a~dp 206 (228)
T 3ovp_A 143 VEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGV-GPDTVHKCAEAGANMIVSGSAIMRSEDP 206 (228)
T ss_dssp SCTTTCSCCCCGGGHHHHHHHHHHCTTCEEEEESSC-STTTHHHHHHHTCCEEEESHHHHTCSCH
T ss_pred ecCCCCCcccCHHHHHHHHHHHHhcCCCCEEEeCCc-CHHHHHHHHHcCCCEEEEeHHHhCCCCH
Confidence 000001112224556777766667999999999 5899999999999999999998876653
|
| >3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.4e-05 Score=79.40 Aligned_cols=123 Identities=11% Similarity=0.044 Sum_probs=94.6
Q ss_pred CCH-HHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCcc
Q 017176 74 SNL-DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDS 150 (376)
Q Consensus 74 ~~~-~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~ 150 (376)
.++ +.+.+.|+++.+.||+.|.|+.|+ +++...+++++||+.+ ++++.+...-+|+
T Consensus 183 ~~~~e~~~~~a~~~~~~Gf~~vKik~g~-----------------~~~~d~e~v~avR~avG~d~~l~vDan~~~~---- 241 (428)
T 3bjs_A 183 YQPKESLAEEAQEYIARGYKALKLRIGD-----------------AARVDIERVRHVRKVLGDEVDILTDANTAYT---- 241 (428)
T ss_dssp SCCHHHHHHHHHHHHHHTCSEEEEECCS-----------------CHHHHHHHHHHHHHHHCTTSEEEEECTTCCC----
T ss_pred CChHHHHHHHHHHHHHCCCCEEEECCCC-----------------CHHHHHHHHHHHHHhcCCCCEEEEECCCCCC----
Confidence 578 999999999999999999998664 4677889999999876 5788887776664
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCC-CeEEEecCCCCHHHHHHHHH-c
Q 017176 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD-LTFTLNGGINTVDEVNAALR-K 228 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~-ipVi~nGgI~s~~da~~~l~-~ 228 (376)
.++.++++ +.+++.|+++|. . .+++.+++..+++++.. + +||++.+.+.++++++++++ .
T Consensus 242 ~~eai~~~-~~L~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~~iPIa~dE~~~~~~~~~~~i~~~ 303 (428)
T 3bjs_A 242 MADARRVL-PVLAEIQAGWLE----E------------PFACNDFASYREVAKIT-PLVPIAAGENHYTRFEFGQMLDAG 303 (428)
T ss_dssp HHHHHHHH-HHHHHTTCSCEE----C------------CSCTTCHHHHHHHTTTC-SSSCEEECTTCCSHHHHHHHHTTC
T ss_pred HHHHHHHH-HHHHhcCCCEEE----C------------CCCccCHHHHHHHHHhC-CCCcEEcCCCcCCHHHHHHHHHhC
Confidence 44555554 456789999875 1 01223477777776654 7 99999999999999999998 5
Q ss_pred CcCeeEE
Q 017176 229 GAHHVMV 235 (376)
Q Consensus 229 Gad~Vmi 235 (376)
.+|.|++
T Consensus 304 ~~d~v~i 310 (428)
T 3bjs_A 304 AVQVWQP 310 (428)
T ss_dssp CEEEECC
T ss_pred CCCEEEe
Confidence 5898877
|
| >3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A | Back alignment and structure |
|---|
Probab=98.16 E-value=3e-05 Score=76.45 Aligned_cols=144 Identities=12% Similarity=0.060 Sum_probs=105.8
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEe
Q 017176 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKC 141 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKi 141 (376)
..|+-..+.+.+++++++.++.+.+.||+.|-+ .|+|..... ....+++...+++++||+.+ ++++.+..
T Consensus 114 ~v~~y~~~~~~~~e~~~~~a~~~~~~G~~~iKl-~G~~~~~~~-------~~~~~~~~d~e~v~avR~avG~d~~L~vDa 185 (405)
T 3rr1_A 114 KMRTYSWVGGDRPADVIAGMKALQAGGFDHFKL-NGCEEMGII-------DTSRAVDAAVARVAEIRSAFGNTVEFGLDF 185 (405)
T ss_dssp CEEEEEECCCSSHHHHHHHHHHHHHTTCCEEEE-ESCCSSSCB-------CSHHHHHHHHHHHHHHHHTTGGGSEEEEEC
T ss_pred ceeeeEeCCCCCHHHHHHHHHHHHHcCCCEEEE-ecCCccccc-------ccchhHHHHHHHHHHHHHHhCCCceEEEEC
Confidence 345666677788999999999998899999999 887643211 11234667788999999987 57888887
Q ss_pred cCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHH
Q 017176 142 RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE 221 (376)
Q Consensus 142 R~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~d 221 (376)
.-+|+ .++.+++ .+.+++.|+++|.- .+++.+++..+++++. .++||++.+.+.++++
T Consensus 186 N~~~~----~~~A~~~-~~~L~~~~i~~iEe----------------P~~~~d~~~~~~l~~~-~~iPIa~dE~i~~~~~ 243 (405)
T 3rr1_A 186 HGRVS----APMAKVL-IKELEPYRPLFIEE----------------PVLAEQAETYARLAAH-THLPIAAGERMFSRFD 243 (405)
T ss_dssp CSCBC----HHHHHHH-HHHHGGGCCSCEEC----------------SSCCSSTHHHHHHHTT-CSSCEEECTTCCSHHH
T ss_pred CCCCC----HHHHHHH-HHHHHhcCCCEEEC----------------CCCcccHHHHHHHHhc-CCCCEEecCCcCCHHH
Confidence 77775 3344443 45567889988751 1122236667777765 4899999999999999
Q ss_pred HHHHHH-cCcCeeEEch
Q 017176 222 VNAALR-KGAHHVMVGR 237 (376)
Q Consensus 222 a~~~l~-~Gad~VmiGR 237 (376)
+.++++ ..+|.|++--
T Consensus 244 ~~~~l~~~a~d~v~~d~ 260 (405)
T 3rr1_A 244 FKRVLEAGGVSILQPDL 260 (405)
T ss_dssp HHHHHHHCCCSEECCBT
T ss_pred HHHHHHHhCCCeEEECh
Confidence 999998 6699998743
|
| >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 | Back alignment and structure |
|---|
Probab=98.15 E-value=3e-06 Score=78.39 Aligned_cols=162 Identities=13% Similarity=0.114 Sum_probs=93.6
Q ss_pred CCCEEEEecCCCHH-HHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEE
Q 017176 64 QHPIVLQIGGSNLD-NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVK 140 (376)
Q Consensus 64 ~~p~~vQL~g~~~~-~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vK 140 (376)
+.|+..|+.+.+|- .+....+.++++||.+| +|+ |..- .-.|.|...|+.+.--..+.++.|+++. ++ +|+=
T Consensus 94 ~iPV~Agv~~~DP~~~~g~~Le~lk~~Gf~Gv-~N~--ptvg-lidG~fr~~LEE~gm~~~~eve~I~~A~~~gL-~Ti~ 168 (286)
T 2p10_A 94 HTPVLAGVNGTDPFMVMSTFLRELKEIGFAGV-QNF--PTVG-LIDGLFRQNLEETGMSYAQEVEMIAEAHKLDL-LTTP 168 (286)
T ss_dssp SSCEEEEECTTCTTCCHHHHHHHHHHHTCCEE-EEC--SCGG-GCCHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-EECC
T ss_pred CCCEEEEECCcCCCcCHHHHHHHHHHhCCceE-EEC--CCcc-cccchhhhhHhhcCCCHHHHHHHHHHHHHCCC-eEEE
Confidence 68999999988873 34444478889999999 997 3211 1134555555554433444444444332 22 1221
Q ss_pred ecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCccc-HHHHH----HHHhhCCCCeEEEec-
Q 017176 141 CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK-YEYYY----ALLRDFPDLTFTLNG- 214 (376)
Q Consensus 141 iR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~-~~~v~----~~~~~~~~ipVi~nG- 214 (376)
+- .+.++.. .+.++|+|.|.+|.+... +|.-+... ...... -+.+. .+++-.+++.|+.-|
T Consensus 169 ~v------~~~eeA~-----amA~agpDiI~~h~glT~-gglIG~~~-avs~~~~~e~i~~i~~a~~~vnpdvivLc~gG 235 (286)
T 2p10_A 169 YV------FSPEDAV-----AMAKAGADILVCHMGLTT-GGAIGARS-GKSMDDCVSLINECIEAARTIRDDIIILSHGG 235 (286)
T ss_dssp EE------CSHHHHH-----HHHHHTCSEEEEECSCC-----------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEEST
T ss_pred ec------CCHHHHH-----HHHHcCCCEEEECCCCCC-CCcccCCC-cccHHHhHHHHHHHHHHHHHhCCCcEEEecCC
Confidence 11 1233322 123689999999976321 11111110 000001 12222 223334678777665
Q ss_pred CCCCHHHHHHHHHc--CcCeeEEchHHhhCC
Q 017176 215 GINTVDEVNAALRK--GAHHVMVGRAAYQNP 243 (376)
Q Consensus 215 gI~s~~da~~~l~~--Gad~VmiGRa~l~~P 243 (376)
+|.+++|++.+++. |+||+..+.++..=|
T Consensus 236 pIstpeDv~~~l~~t~G~~G~~gASsier~p 266 (286)
T 2p10_A 236 PIANPEDARFILDSCQGCHGFYGASSMERLP 266 (286)
T ss_dssp TCCSHHHHHHHHHHCTTCCEEEESHHHHHHH
T ss_pred CCCCHHHHHHHHhcCCCccEEEeehhhhcCC
Confidence 99999999999995 899999999998877
|
| >3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=98.14 E-value=2.1e-05 Score=71.56 Aligned_cols=141 Identities=15% Similarity=0.103 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 154 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~ 154 (376)
..+.-+.-++.+.+.|+|.||+.. + +|.-...+.+.+.+-+++|++.++- ..+|+-+-... -+-++.
T Consensus 93 ~~~~Kv~Ea~~Ai~~GAdEIDmVi-----N------ig~lk~g~~~~v~~eI~~v~~a~~~-~~lKVIlEt~~-Lt~eei 159 (239)
T 3ngj_A 93 PSEVKAYETKVAVEQGAEEVDMVI-----N------IGMVKAKKYDDVEKDVKAVVDASGK-ALTKVIIECCY-LTNEEK 159 (239)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEC-----C------HHHHHTTCHHHHHHHHHHHHHHHTT-SEEEEECCGGG-SCHHHH
T ss_pred chHHHHHHHHHHHHcCCCEEEEEe-----e------hHHhccccHHHHHHHHHHHHHHhcC-CceEEEEecCC-CCHHHH
Confidence 344445556667778999999964 1 3555556778888888888887742 24554331111 122333
Q ss_pred HHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcC--e
Q 017176 155 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--H 232 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad--~ 232 (376)
..+.++..++|+|+|-.+.+.. ..| +. .-+.+.+++... .+++|.++|||+|.+|+.++++.||+ |
T Consensus 160 -~~a~~ia~~aGADfVKTSTGf~-~gg---At-----~~dv~lmr~~vg--~~v~VKasGGIrt~~da~~~i~aGA~riG 227 (239)
T 3ngj_A 160 -VEVCKRCVAAGAEYVKTSTGFG-THG---AT-----PEDVKLMKDTVG--DKALVKAAGGIRTFDDAMKMINNGASRIG 227 (239)
T ss_dssp -HHHHHHHHHHTCSEEECCCSSS-SCC---CC-----HHHHHHHHHHHG--GGSEEEEESSCCSHHHHHHHHHTTEEEEE
T ss_pred -HHHHHHHHHHCcCEEECCCCCC-CCC---CC-----HHHHHHHHHhhC--CCceEEEeCCCCCHHHHHHHHHhccccee
Confidence 3345666789999998774421 011 11 011333444443 37999999999999999999999999 5
Q ss_pred eEEchHHh
Q 017176 233 VMVGRAAY 240 (376)
Q Consensus 233 VmiGRa~l 240 (376)
+..|+.++
T Consensus 228 tS~~~~I~ 235 (239)
T 3ngj_A 228 ASAGIAIL 235 (239)
T ss_dssp ESCHHHHH
T ss_pred cccHHHHH
Confidence 55555544
|
| >3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=2.6e-05 Score=71.68 Aligned_cols=142 Identities=16% Similarity=0.132 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 154 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~ 154 (376)
..+.-+.-++.+.+.|+|.||+.+ + +|.-...+.+.+.+-+.++++.++ ...+|+-+-... -+-++.
T Consensus 109 ~~~~Kv~Ea~~Ai~~GAdEIDmVi-----N------ig~lk~g~~~~v~~eI~~v~~a~~-~~~lKVIlEt~~-Lt~eei 175 (260)
T 3r12_A 109 ETRTKAHEAIFAVESGADEIDMVI-----N------VGMLKAKEWEYVYEDIRSVVESVK-GKVVKVIIETCY-LDTEEK 175 (260)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEC-----C------HHHHHTTCHHHHHHHHHHHHHHTT-TSEEEEECCGGG-CCHHHH
T ss_pred cHHHHHHHHHHHHHcCCCEEEEEe-----e------hhhhccccHHHHHHHHHHHHHhcC-CCcEEEEEeCCC-CCHHHH
Confidence 344444455667777999999853 1 465556688888888888888764 234565442211 122333
Q ss_pred HHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcC--e
Q 017176 155 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--H 232 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad--~ 232 (376)
. .+.++..++|+|+|-.+.+.. ..| +. .-+...+.+... .+++|-++|||+|.+|+.++++.||+ |
T Consensus 176 ~-~A~~ia~eaGADfVKTSTGf~-~~G---AT-----~edV~lm~~~vg--~~v~VKaAGGIrt~~~al~mi~aGA~RiG 243 (260)
T 3r12_A 176 I-AACVISKLAGAHFVKTSTGFG-TGG---AT-----AEDVHLMKWIVG--DEMGVKASGGIRTFEDAVKMIMYGADRIG 243 (260)
T ss_dssp H-HHHHHHHHTTCSEEECCCSSS-SCC---CC-----HHHHHHHHHHHC--TTSEEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred H-HHHHHHHHhCcCEEEcCCCCC-CCC---CC-----HHHHHHHHHHhC--CCceEEEeCCCCCHHHHHHHHHcCCceee
Confidence 3 345677789999998764321 011 10 111233344432 37999999999999999999999999 6
Q ss_pred eEEchHHhh
Q 017176 233 VMVGRAAYQ 241 (376)
Q Consensus 233 VmiGRa~l~ 241 (376)
+..|+.++.
T Consensus 244 tS~g~~I~~ 252 (260)
T 3r12_A 244 TSSGVKIVQ 252 (260)
T ss_dssp ESCHHHHHH
T ss_pred cchHHHHHH
Confidence 666666654
|
| >2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A | Back alignment and structure |
|---|
Probab=98.13 E-value=8.1e-05 Score=71.57 Aligned_cols=131 Identities=14% Similarity=0.109 Sum_probs=96.3
Q ss_pred EecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCC
Q 017176 70 QIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDH 148 (376)
Q Consensus 70 QL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~ 148 (376)
.+.+.+++++.+.|+++.+.||+.|.|+.|+ +++...+++++||+.- ++++.+...-+|+
T Consensus 134 ~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~-----------------~~~~d~~~v~avr~~g~~~~l~vDan~~~~-- 194 (345)
T 2zad_A 134 TVGIDTVENRVKEAKKIFEEGFRVIKIKVGE-----------------NLKEDIEAVEEIAKVTRGAKYIVDANMGYT-- 194 (345)
T ss_dssp EECSCCHHHHHHHHHHHHHTTCSEEEEECCS-----------------CHHHHHHHHHHHHHHSTTCEEEEECTTCSC--
T ss_pred EecCCCHHHHHHHHHHHHHcCcCEEEEeecC-----------------CHHHHHHHHHHHHhhCCCCeEEEECCCCCC--
Confidence 3555689999999999999999999998664 3566678889998862 3566665555553
Q ss_pred ccHHHHHHHHHHHhhcCCcc--EEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHH
Q 017176 149 DSYNQLCDFIYKVSSLSPTR--HFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL 226 (376)
Q Consensus 149 ~~~~~~~~~i~~~~e~~Gvd--~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l 226 (376)
.++.++++ +.+++.|++ +|. . .+++.+++..+++.+.. ++||++.+.+.+++++.+++
T Consensus 195 --~~~a~~~~-~~l~~~~i~~~~iE----~------------P~~~~~~~~~~~l~~~~-~ipia~dE~~~~~~~~~~~i 254 (345)
T 2zad_A 195 --QKEAVEFA-RAVYQKGIDIAVYE----Q------------PVRREDIEGLKFVRFHS-PFPVAADESARTKFDVMRLV 254 (345)
T ss_dssp --HHHHHHHH-HHHHHTTCCCSEEE----C------------CSCTTCHHHHHHHHHHS-SSCEEESTTCCSHHHHHHHH
T ss_pred --HHHHHHHH-HHHHhcCCCeeeee----C------------CCCcccHHHHHHHHHhC-CCCEEEeCCcCCHHHHHHHH
Confidence 44555554 456778998 764 1 11233477777877765 89999999999999999999
Q ss_pred H-cCcCeeEE--chHH
Q 017176 227 R-KGAHHVMV--GRAA 239 (376)
Q Consensus 227 ~-~Gad~Vmi--GRa~ 239 (376)
+ ..+|.|++ ++|-
T Consensus 255 ~~~~~d~v~ik~~~GG 270 (345)
T 2zad_A 255 KEEAVDYVNIKLMKSG 270 (345)
T ss_dssp HHTCCSEEEECHHHHH
T ss_pred HhCCCCEEEEeccccc
Confidence 8 56999998 5543
|
| >2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A | Back alignment and structure |
|---|
Probab=98.11 E-value=3.6e-05 Score=76.65 Aligned_cols=125 Identities=11% Similarity=0.071 Sum_probs=94.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCcc
Q 017176 73 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDS 150 (376)
Q Consensus 73 g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~ 150 (376)
+.+++++.+.|+++.+.||+.|.|+.|+ +++...+++++||+.+ ++++.+...-+|+
T Consensus 196 ~~~~e~~~~~a~~~~~~Gf~~vKik~g~-----------------~~~~d~e~v~avR~a~G~d~~l~vDan~~~~---- 254 (441)
T 2hxt_A 196 GYSDEKLVRLAKEAVADGFRTIKLKVGA-----------------NVQDDIRRCRLARAAIGPDIAMAVDANQRWD---- 254 (441)
T ss_dssp TSCHHHHHHHHHHHHHTTCSEEEEECCS-----------------CHHHHHHHHHHHHHHHCSSSEEEEECTTCCC----
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEccCC-----------------CHHHHHHHHHHHHHhcCCCCeEEEECCCCCC----
Confidence 3589999999999999999999998652 3677788999999876 5778887766664
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cC
Q 017176 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KG 229 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~G 229 (376)
.++.+++ .+.+++.|+++|.- .+++.+++..+++++...++||++.+.+.+++++.++++ ..
T Consensus 255 ~~~a~~~-~~~l~~~~i~~iEq----------------P~~~~d~~~~~~l~~~~~~iPIa~dE~~~~~~~~~~~i~~~~ 317 (441)
T 2hxt_A 255 VGPAIDW-MRQLAEFDIAWIEE----------------PTSPDDVLGHAAIRQGITPVPVSTGEHTQNRVVFKQLLQAGA 317 (441)
T ss_dssp HHHHHHH-HHTTGGGCCSCEEC----------------CSCTTCHHHHHHHHHHHTTSCEEECTTCCSHHHHHHHHHHTC
T ss_pred HHHHHHH-HHHHHhcCCCeeeC----------------CCCHHHHHHHHHHHhhCCCCCEEEeCCcCCHHHHHHHHHcCC
Confidence 4455554 34567789987651 012224676777776543699999999999999999998 56
Q ss_pred cCeeEE
Q 017176 230 AHHVMV 235 (376)
Q Consensus 230 ad~Vmi 235 (376)
+|.|++
T Consensus 318 ~d~v~i 323 (441)
T 2hxt_A 318 VDLIQI 323 (441)
T ss_dssp CSEECC
T ss_pred CCEEEe
Confidence 899887
|
| >2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=1.8e-05 Score=71.95 Aligned_cols=53 Identities=19% Similarity=0.314 Sum_probs=46.6
Q ss_pred cHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchhh
Q 017176 194 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247 (376)
Q Consensus 194 ~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~ 247 (376)
..+.+.++++...++||+.-|||+|+++++++++ |||+|.+|+++..+|.-++
T Consensus 177 ~~~~i~~i~~~~~~~Pv~vGgGI~s~e~a~~~~~-gAd~VIVGSa~v~~~~~~~ 229 (234)
T 2f6u_A 177 NPELVAEVKKVLDKARLFYGGGIDSREKAREMLR-YADTIIVGNVIYEKGIDAF 229 (234)
T ss_dssp CHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH-HSSEEEECHHHHHHCHHHH
T ss_pred hHHHHHHHHHhCCCCCEEEEecCCCHHHHHHHHh-CCCEEEEChHHHhCHHHHH
Confidence 4778888877644899999999999999999999 9999999999999997544
|
| >1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=3.4e-05 Score=70.50 Aligned_cols=153 Identities=17% Similarity=0.072 Sum_probs=94.3
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEE------ecCCCCCC-----
Q 017176 80 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK------CRIGVDDH----- 148 (376)
Q Consensus 80 ~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vK------iR~g~~~~----- 148 (376)
.++++.+.++|+|.|+|..+ . | -+.+.+.++++++|+ +++|+.+= +..|.+-.
T Consensus 23 ~~~~~~l~~~GaD~ielG~S--------~---G----vt~~~~~~~v~~ir~-~~~Pivlm~y~~n~i~~G~dg~iiPdL 86 (240)
T 1viz_A 23 DEQLEILCESGTDAVIIGGS--------D---G----VTEDNVLRMMSKVRR-FLVPCVLEVSAIEAIVPGFDLYFIPSV 86 (240)
T ss_dssp HHHHHHHHTSCCSEEEECC-------------------CHHHHHHHHHHHTT-SSSCEEEECSCGGGCCSCCSEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEECCC--------C---C----CCHHHHHHHHHHhhC-cCCCEEEecCccccccCCCCEEEEccc
Confidence 44567788899999999761 1 3 357789999999998 88898752 22232210
Q ss_pred --ccHHHHH-HHHHHHhhcCC-----ccEEE----E-ccCcc---cc----------------------CCCCCCCCCCC
Q 017176 149 --DSYNQLC-DFIYKVSSLSP-----TRHFI----I-HSRKA---LL----------------------NGISPAENRTI 190 (376)
Q Consensus 149 --~~~~~~~-~~i~~~~e~~G-----vd~I~----v-h~r~~---~~----------------------~g~~~~~~~~~ 190 (376)
++-+++. ..-...+.+.| .+.|- + ++.+. .. .+.......-
T Consensus 87 p~ee~~~~~~g~~~~a~~~~g~~~~~l~~i~~gy~l~~P~~~~~rl~~~d~~~~~~~~~~~a~~g~~~~~~~VYl~s~G- 165 (240)
T 1viz_A 87 LNSKNADWIVGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSELLQLPIFYLEYSG- 165 (240)
T ss_dssp TTBSSGGGTTHHHHHHHHHCHHHHHHSCEEEEEEEECCTTSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCSEEEEECTT-
T ss_pred CcccChhhhcchhHHHHHHcCCCCcceeeeecccEEECCCCceEEeeccCCCCCHHHHHHHHHhCcccCCCEEEEeCCC-
Confidence 1111110 00012345677 66664 3 22111 00 0110000000
Q ss_pred CcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc-hhhHhhh
Q 017176 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW-YTLGHVD 251 (376)
Q Consensus 191 ~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~-lf~~~~~ 251 (376)
.+...+.+.++++...++||+.-|||+|+++++++++ |||+|.+|+++..+|. ++ ++++
T Consensus 166 ~~~~~~~i~~i~~~~~~~Pv~vGgGI~t~e~a~~~~~-gAd~VIVGSa~v~~~~~~~-~~v~ 225 (240)
T 1viz_A 166 VLGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAE-HADVIVVGNAVYEDFDRAL-KTVA 225 (240)
T ss_dssp SCCCHHHHHHHHHTCSSSEEEEESSCCSHHHHHHHHT-TCSEEEECTHHHHCHHHHH-THHH
T ss_pred ccChHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHh-CCCEEEEChHHHhCHHHHH-HHHH
Confidence 1234778888877533899999999999999999999 9999999999999998 54 4443
|
| >4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=6.3e-05 Score=73.78 Aligned_cols=139 Identities=9% Similarity=0.050 Sum_probs=104.2
Q ss_pred CCEEEEec---CCCHHHHHHHH-HHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEE
Q 017176 65 HPIVLQIG---GSNLDNLAKAT-ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVS 138 (376)
Q Consensus 65 ~p~~vQL~---g~~~~~~~~aa-~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~ 138 (376)
-|+-..+. ..+++++++.+ +.+.+.||..+.+..|++.+. ...+++.-.+++++||+.+ ++++.
T Consensus 126 v~~y~s~~g~~~~~~e~~~~~a~~~~~~~G~~~~KlKvG~~~~~----------~~~~~~~d~~~v~avR~a~g~~~~l~ 195 (393)
T 4dwd_A 126 LPCYSSIGGNAARSVDEVVREVARRVEAEQPAAVKIRWDGDRTR----------CDVDIPGDIAKARAVRELLGPDAVIG 195 (393)
T ss_dssp EEEEEEECCCSSSCHHHHHHHHHHHHHHHCCSEEEEECCCCTTC----------CSCCHHHHHHHHHHHHHHHCTTCCEE
T ss_pred eeeEEecCccCCCCHHHHHHHHHHHHHHcCCCEEEEccCCCCcc----------cccCHHHHHHHHHHHHHHhCCCCeEE
Confidence 34555542 35789999888 887778999999999987532 2357888899999999986 67899
Q ss_pred EEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCC
Q 017176 139 VKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 218 (376)
Q Consensus 139 vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s 218 (376)
|...-+|+. ++.+++ .+.+++.|+++|.= .+++.+++..+++++.. ++||++...+.+
T Consensus 196 vDaN~~~~~----~~A~~~-~~~L~~~~i~~iEq----------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~ 253 (393)
T 4dwd_A 196 FDANNGYSV----GGAIRV-GRALEDLGYSWFEE----------------PVQHYHVGAMGEVAQRL-DITVSAGEQTYT 253 (393)
T ss_dssp EECTTCCCH----HHHHHH-HHHHHHTTCSEEEC----------------CSCTTCHHHHHHHHHHC-SSEEEBCTTCCS
T ss_pred EECCCCCCH----HHHHHH-HHHHHhhCCCEEEC----------------CCCcccHHHHHHHHhhC-CCCEEecCCcCC
Confidence 988887763 344443 34567899998861 11223477777877764 899999999999
Q ss_pred HHHHHHHHHcCcCeeEE
Q 017176 219 VDEVNAALRKGAHHVMV 235 (376)
Q Consensus 219 ~~da~~~l~~Gad~Vmi 235 (376)
.+++.++++.|+|.|++
T Consensus 254 ~~~~~~~i~~~~d~v~~ 270 (393)
T 4dwd_A 254 LQALKDLILSGVRMVQP 270 (393)
T ss_dssp HHHHHHHHHHTCCEECC
T ss_pred HHHHHHHHHcCCCEEEe
Confidence 99999999844999887
|
| >3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A | Back alignment and structure |
|---|
Probab=98.07 E-value=3.3e-05 Score=76.04 Aligned_cols=153 Identities=10% Similarity=0.052 Sum_probs=106.0
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCcccc------CCCCcccccc--CCHHHHHHHHHHHhccc--
Q 017176 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVA------GHGCFGVSLM--LDPKFVGEAMSVIAANT-- 133 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~------r~g~yG~~l~--~~~~~~~eiv~~v~~~~-- 133 (376)
..|+-..+.+.+++.+++.++.+.+.||..+-+..|++..... .... |..+. ..++...+++++||+.+
T Consensus 122 ~v~~y~~~~~~~~e~~~~~a~~~~~~G~~~~K~KvG~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~d~~~v~avR~a~G~ 200 (401)
T 3sbf_A 122 AIPVYTHATSDTMEGIYDLVEGFLEKGYKHIRCQLGFYGGVPTDLHTTQNPTE-GSYYDQDQYMDNTLTMFKSLREKYGN 200 (401)
T ss_dssp SEEEEEEEEESSHHHHHHHHHHHHHTTCCEEEEEESCCCSCGGGSCCCSSCCS-SEECCHHHHHHHHHHHHHHHHHHHTT
T ss_pred eeeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeeccCCcccccccccccccc-cccccchHHHHHHHHHHHHHHHHcCC
Confidence 3345455667889999999999888999999999987531100 0011 22221 12567888999999987
Q ss_pred CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEe
Q 017176 134 NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN 213 (376)
Q Consensus 134 ~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~n 213 (376)
++++.+...-+|+. ++.+++ .+.+++.|+++|.- . +++.+++.++++++. .++||++.
T Consensus 201 d~~l~vDan~~~~~----~~A~~~-~~~L~~~~i~~iEq----P------------~~~~~~~~~~~l~~~-~~iPIa~d 258 (401)
T 3sbf_A 201 QFHILHDVHERLFP----NQAIQF-AKEVEQYKPYFIED----I------------LPPNQTEWLDNIRSQ-SSVSLGLG 258 (401)
T ss_dssp SSEEEEECTTCSCH----HHHHHH-HHHHGGGCCSCEEC----S------------SCTTCGGGHHHHHTT-CCCCEEEC
T ss_pred CCEEEEECCCCCCH----HHHHHH-HHHHHhcCCCEEEC----C------------CChhHHHHHHHHHhh-CCCCEEeC
Confidence 57899988888763 344444 44567889988751 0 112235556677665 48999999
Q ss_pred cCCCCHHHHHHHHH-cCcCeeEEchHH
Q 017176 214 GGINTVDEVNAALR-KGAHHVMVGRAA 239 (376)
Q Consensus 214 GgI~s~~da~~~l~-~Gad~VmiGRa~ 239 (376)
+.+.+++++.++++ ..+|.|++--+-
T Consensus 259 E~~~~~~~~~~~i~~~~~d~v~~k~~~ 285 (401)
T 3sbf_A 259 ELFNNPEEWKSLIANRRIDFIRCHVSQ 285 (401)
T ss_dssp TTCCSHHHHHHHHHTTCCSEECCCGGG
T ss_pred CccCCHHHHHHHHhcCCCCEEecCccc
Confidence 99999999999998 569998874433
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.07 E-value=5.7e-05 Score=70.00 Aligned_cols=153 Identities=15% Similarity=0.131 Sum_probs=90.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCC-----------CccccccCCHHHHHHHHHHHhccc-CccEEEEe
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHG-----------CFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKC 141 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g-----------~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKi 141 (376)
.+.+...+.++.+.++|+|.|||+. |...-...| ..| -+.+.+.++++++++.+ ++|+.+ +
T Consensus 28 p~~~~~~~~~~~l~~~G~D~IElG~--P~sdP~adgp~i~~a~~~al~~G----~~~~~~~~~v~~ir~~~~~~Pi~~-m 100 (262)
T 2ekc_A 28 PDYETSLKAFKEVLKNGTDILEIGF--PFSDPVADGPTIQVAHEVALKNG----IRFEDVLELSETLRKEFPDIPFLL-M 100 (262)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEEC--CCSCCTTSCHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHHCTTSCEEE-E
T ss_pred CChHHHHHHHHHHHHcCCCEEEECC--CCCCcccccHHHHHHHHHHHHcC----CCHHHHHHHHHHHHhhcCCCCEEE-E
Confidence 3557888899999999999999954 432100000 012 25567889999999888 889877 2
Q ss_pred cCCCCCC-c--cHHHHHHHHHHHhhcCCccEEEEccC--------------------------cc---------------
Q 017176 142 RIGVDDH-D--SYNQLCDFIYKVSSLSPTRHFIIHSR--------------------------KA--------------- 177 (376)
Q Consensus 142 R~g~~~~-~--~~~~~~~~i~~~~e~~Gvd~I~vh~r--------------------------~~--------------- 177 (376)
++.+. . .+++ ++. .+.++|+|.++++.- +.
T Consensus 101 --~y~n~v~~~g~~~---f~~-~~~~aG~dgvii~dl~~ee~~~~~~~~~~~gl~~i~l~~p~t~~~rl~~ia~~a~gfi 174 (262)
T 2ekc_A 101 --TYYNPIFRIGLEK---FCR-LSREKGIDGFIVPDLPPEEAEELKAVMKKYVLSFVPLGAPTSTRKRIKLICEAADEMT 174 (262)
T ss_dssp --CCHHHHHHHCHHH---HHH-HHHHTTCCEEECTTCCHHHHHHHHHHHHHTTCEECCEECTTCCHHHHHHHHHHCSSCE
T ss_pred --ecCcHHHHhhHHH---HHH-HHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCCE
Confidence 11110 0 0111 111 223456665554321 00
Q ss_pred ---ccCCCCCCCCCCCC-cccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 178 ---LLNGISPAENRTIP-PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 178 ---~~~g~~~~~~~~~~-~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
...|..+.. ...+ +...+.+.++++.. ++||+..+||.+++++.+ +..|||+|.+|+++...
T Consensus 175 y~vs~~g~TG~~-~~~~~~~~~~~v~~vr~~~-~~pv~vG~GI~t~e~~~~-~~~gADgvIVGSai~~~ 240 (262)
T 2ekc_A 175 YFVSVTGTTGAR-EKLPYERIKKKVEEYRELC-DKPVVVGFGVSKKEHARE-IGSFADGVVVGSALVKL 240 (262)
T ss_dssp EEESSCC----------CHHHHHHHHHHHHHC-CSCEEEESSCCSHHHHHH-HHTTSSEEEECHHHHHH
T ss_pred EEEecCCccCCC-CCcCcccHHHHHHHHHhhc-CCCEEEeCCCCCHHHHHH-HHcCCCEEEECHHHHhh
Confidence 000111111 0001 11135667776654 899999999999999999 66789999999999765
|
| >4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii} | Back alignment and structure |
|---|
Probab=98.05 E-value=3.6e-05 Score=75.79 Aligned_cols=135 Identities=14% Similarity=0.042 Sum_probs=99.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCcccc-ccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCcc
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVS-LMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDS 150 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~-l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~ 150 (376)
.+++.+++.|+.+.+.||..+.++.|+|... ..|.. ...+++...+++++||+.+ ++++.+...-+|+
T Consensus 150 ~~~e~~~~~a~~~~~~G~~~~KlK~g~~~~~-----~~g~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDan~~~~---- 220 (404)
T 4e5t_A 150 NDADMAAEAAAKAVDQGFTAVKFDPAGAYTI-----YDGHQPSLEDLERSEAFCKQIRAAVGTKADLLFGTHGQFT---- 220 (404)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEECCSCCCBT-----TCSBCCCHHHHHHHHHHHHHHHHHHGGGSEEEECCCSCBC----
T ss_pred CCHHHHHHHHHHHHHcCCCEEeeCCCCCCcc-----cccccccHHHHHHHHHHHHHHHHHcCCCCeEEEeCCCCcC----
Confidence 4789999999888888999999999987531 11211 1224677888999999987 5788888777775
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cC
Q 017176 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KG 229 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~G 229 (376)
.++.+++ .+.+++.|+++|.- .+++.+++..+++++.. ++||++.+.+.+++++.++++ ..
T Consensus 221 ~~~A~~~-~~~l~~~~i~~iEe----------------P~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~a 282 (404)
T 4e5t_A 221 VSGAKRL-ARRLEAYDPLWFEE----------------PIPPEKPEDMAEVARYT-SIPVATGERLCTKYEFSRVLETGA 282 (404)
T ss_dssp HHHHHHH-HHHHGGGCCSEEEC----------------CSCTTCHHHHHHHHHHC-SSCEEECTTCCHHHHHHHHHHHTC
T ss_pred HHHHHHH-HHHHhhcCCcEEEC----------------CCCcccHHHHHHHHhhC-CCCEEeCCCcCCHHHHHHHHHhCC
Confidence 3344443 45567889998861 11222467777887765 899999999999999999998 56
Q ss_pred cCeeEE
Q 017176 230 AHHVMV 235 (376)
Q Consensus 230 ad~Vmi 235 (376)
+|.|++
T Consensus 283 ~d~v~~ 288 (404)
T 4e5t_A 283 ASILQM 288 (404)
T ss_dssp CSEECC
T ss_pred CCEEec
Confidence 899876
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=98.04 E-value=2.4e-05 Score=72.19 Aligned_cols=50 Identities=18% Similarity=0.094 Sum_probs=42.0
Q ss_pred HHHHHHHHhhCC----CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 195 YEYYYALLRDFP----DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 195 ~~~v~~~~~~~~----~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
++.+.++.+..+ ++|+|+.|||.|++|+.++.+ |+|+|.||++++..++.
T Consensus 192 l~~~~~L~~~i~~~~~~~~vIAegGI~s~~dv~~l~~-Ga~gvlVGsAl~~~~d~ 245 (254)
T 1vc4_A 192 LETAPRLGRLARKRGFGGVLVAESGYSRKEELKALEG-LFDAVLIGTSLMRAPDL 245 (254)
T ss_dssp TTHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHTTTT-TCSEEEECHHHHTSSCH
T ss_pred HHHHHHHHHhCccccCCCeEEEEcCCCCHHHHHHHHc-CCCEEEEeHHHcCCCCH
Confidence 444445554443 689999999999999999999 99999999999998885
|
| >1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=6.6e-05 Score=67.70 Aligned_cols=142 Identities=14% Similarity=0.090 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 154 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~ 154 (376)
..+.-..-++.+.+.|+|.||+.+ + +|.-...+.+.+.+-+.++++.++-+ .+|+-+-... .+.++
T Consensus 69 ~~~~k~~e~~~Ai~~GAdevd~vi-----n------ig~~~~g~~~~v~~ei~~v~~a~~~~-~lkvIlet~~-l~~e~- 134 (220)
T 1ub3_A 69 EKEVKALEAALACARGADEVDMVL-----H------LGRAKAGDLDYLEAEVRAVREAVPQA-VLKVILETGY-FSPEE- 134 (220)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEC-----C------HHHHHTTCHHHHHHHHHHHHHHSTTS-EEEEECCGGG-SCHHH-
T ss_pred chHHHHHHHHHHHHcCCCEEEecc-----c------chhhhCCCHHHHHHHHHHHHHHHcCC-CceEEEecCC-CCHHH-
Confidence 344455566777888999999964 1 35444567788888888888876433 5564332111 12233
Q ss_pred HHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcC--e
Q 017176 155 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--H 232 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad--~ 232 (376)
+....++..++|+|+|-.+.+... .| +. +-+.+.+.+.. -.++||-++|||+|.+++.++++.||+ |
T Consensus 135 i~~a~~ia~eaGADfVKTsTGf~~-~g---at-----~~dv~~m~~~v--g~~v~VkaaGGirt~~~al~~i~aGa~RiG 203 (220)
T 1ub3_A 135 IARLAEAAIRGGADFLKTSTGFGP-RG---AS-----LEDVALLVRVA--QGRAQVKAAGGIRDRETALRMLKAGASRLG 203 (220)
T ss_dssp HHHHHHHHHHHTCSEEECCCSSSS-CC---CC-----HHHHHHHHHHH--TTSSEEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHhCCCEEEeCCCCCC-CC---CC-----HHHHHHHHHhh--CCCCeEEEECCCCCHHHHHHHHHCCCcccc
Confidence 334566777899999986643210 11 10 11133344443 237999999999999999999999999 7
Q ss_pred eEEchHHhh
Q 017176 233 VMVGRAAYQ 241 (376)
Q Consensus 233 VmiGRa~l~ 241 (376)
+..|+.++.
T Consensus 204 ~S~g~~I~~ 212 (220)
T 1ub3_A 204 TSSGVALVA 212 (220)
T ss_dssp ETTHHHHHC
T ss_pred hhHHHHHHH
Confidence 777777553
|
| >3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=2.3e-05 Score=77.55 Aligned_cols=146 Identities=12% Similarity=0.083 Sum_probs=103.4
Q ss_pred CCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccc--------------------cccCCHHHHHH
Q 017176 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGV--------------------SLMLDPKFVGE 124 (376)
Q Consensus 65 ~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~--------------------~l~~~~~~~~e 124 (376)
.|+-.-+.+.+++++++.++.+.+.||..+-+..|+|...+. ||. ...++++...+
T Consensus 133 v~~y~~~~~~~~e~~~~~a~~~~~~Gf~~~K~k~G~~~~~~~----~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~ 208 (418)
T 3r4e_A 133 IMVYGHANGSDIAETVEAVGHYIDMGYKAIRAQTGVPGIKDA----YGVGRGKLYYEPADASLPSVTGWDTRKALNYVPK 208 (418)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEECCTTC----------------------CCCCEEEECHHHHHHHHHH
T ss_pred eeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCCcccccc----ccccccccccccccccccccccccchhHHHHHHH
Confidence 344444567789999999999988999999999999753211 121 11123567888
Q ss_pred HHHHHhccc--CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHH
Q 017176 125 AMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL 202 (376)
Q Consensus 125 iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~ 202 (376)
++++||+.+ ++++.+...-+|+. ++.+++ ++.+++.|+++|.- . +++.+++..++++
T Consensus 209 ~v~avR~a~G~d~~l~vDaN~~~~~----~~A~~~-~~~L~~~~i~~iEq----P------------~~~~d~~~~~~l~ 267 (418)
T 3r4e_A 209 LFEELRKTYGFDHHLLHDGHHRYTP----QEAANL-GKMLEPYQLFWLED----C------------TPAENQEAFRLVR 267 (418)
T ss_dssp HHHHHHHHHCSSSEEEEECTTCSCH----HHHHHH-HHHHGGGCCSEEES----C------------SCCSSGGGGHHHH
T ss_pred HHHHHHHHcCCCCeEEEeCCCCCCH----HHHHHH-HHHHHhhCCCEEEC----C------------CCccCHHHHHHHH
Confidence 999999987 57888888877753 344443 44567889998861 1 1112245556666
Q ss_pred hhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEc
Q 017176 203 RDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVG 236 (376)
Q Consensus 203 ~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiG 236 (376)
+.. ++||++.+.+.+++++.++++ ..+|.|++-
T Consensus 268 ~~~-~iPIa~dE~~~~~~~~~~~l~~~a~d~v~~k 301 (418)
T 3r4e_A 268 QHT-VTPLAVGEIFNTIWDAKDLIQNQLIDYIRAT 301 (418)
T ss_dssp HHC-CSCEEECTTCCSGGGTHHHHHTTCCSEECCC
T ss_pred hcC-CCCEEEcCCcCCHHHHHHHHHcCCCCeEecC
Confidence 664 899999999999999999999 568998873
|
| >3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00011 Score=71.67 Aligned_cols=133 Identities=14% Similarity=0.164 Sum_probs=98.6
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHC-CCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEec
Q 017176 66 PIVLQIGGSNLDNLAKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCR 142 (376)
Q Consensus 66 p~~vQL~g~~~~~~~~aa~~~~~~-G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR 142 (376)
|+...+...+++.+.+.++...+. ||..+.+..|++ +++.-.+++++||+.+ ++++.|...
T Consensus 139 ~~~~t~~~~~~~~~~~~a~~~~~~~G~~~~K~Kvg~~----------------~~~~d~~~v~avR~a~g~~~~l~vDan 202 (383)
T 3i4k_A 139 DVTWALGVLPLDVAVAEIEERIEEFGNRSFKLKMGAG----------------DPAEDTRRVAELAREVGDRVSLRIDIN 202 (383)
T ss_dssp EBCEEECSCCHHHHHHHHHHHHHHHCCSEEEEECCSS----------------CHHHHHHHHHHHHHTTTTTSEEEEECT
T ss_pred EEeEEeeCCCHHHHHHHHHHHHHhcCCcEEEEeeCCC----------------CHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence 334455566888888877766665 999999987652 4566778899999987 478999988
Q ss_pred CCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHH
Q 017176 143 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 222 (376)
Q Consensus 143 ~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da 222 (376)
-+|+. ++.+++ .+.+++.|+++|. . .+++.+++..+++.+.. ++||++.+.+.+.+++
T Consensus 203 ~~~~~----~~A~~~-~~~l~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~ 260 (383)
T 3i4k_A 203 ARWDR----RTALHY-LPILAEAGVELFE----Q------------PTPADDLETLREITRRT-NVSVMADESVWTPAEA 260 (383)
T ss_dssp TCSCH----HHHHHH-HHHHHHTTCCEEE----S------------CSCTTCHHHHHHHHHHH-CCEEEESTTCSSHHHH
T ss_pred CCCCH----HHHHHH-HHHHHhcCCCEEE----C------------CCChhhHHHHHHHHhhC-CCCEEecCccCCHHHH
Confidence 88863 344443 4456789999886 1 11223467777777664 8999999999999999
Q ss_pred HHHHH-cCcCeeEEc
Q 017176 223 NAALR-KGAHHVMVG 236 (376)
Q Consensus 223 ~~~l~-~Gad~VmiG 236 (376)
.++++ ..+|.|++-
T Consensus 261 ~~~i~~~~~d~v~~k 275 (383)
T 3i4k_A 261 LAVVKAQAADVIALK 275 (383)
T ss_dssp HHHHHHTCCSEEEEC
T ss_pred HHHHHcCCCCEEEEc
Confidence 99998 569999983
|
| >1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00013 Score=67.54 Aligned_cols=133 Identities=15% Similarity=0.146 Sum_probs=84.5
Q ss_pred HHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcc---cCccEEEEecC-CCCCC--ccHHHH
Q 017176 81 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN---TNVPVSVKCRI-GVDDH--DSYNQL 154 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~---~~~pv~vKiR~-g~~~~--~~~~~~ 154 (376)
..++.+.+.|+|.|++.. + .+.+ +.+.+.+.++++++. .++|+.+=..+ |.+-. .+.++
T Consensus 96 ~~ve~Ai~~Ga~~v~~~~-----n-ig~~--------~~~~~~~~~~~v~~~~~~~~~~vIi~~~~~G~~~~~~~s~~~- 160 (263)
T 1w8s_A 96 CSVEEAVSLGASAVGYTI-----Y-PGSG--------FEWKMFEELARIKRDAVKFDLPLVVESFPRGGKVVNETAPEI- 160 (263)
T ss_dssp SCHHHHHHTTCSEEEEEE-----C-TTST--------THHHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHH-
T ss_pred HHHHHHHHCCCCEEEEEE-----e-cCCc--------CHHHHHHHHHHHHHHHHHcCCeEEEEeeCCCCccccCCCHHH-
Confidence 345667788999999853 1 1111 223344444444432 36787765443 11100 02232
Q ss_pred HHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCC--CHHHHHHHH----Hc
Q 017176 155 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN--TVDEVNAAL----RK 228 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~--s~~da~~~l----~~ 228 (376)
+...+++..+.|+|+|-+.- . + ..+.++++++..+.+||++.|||. |.+++.+++ +.
T Consensus 161 i~~a~~~a~~~GAD~vkt~~--~---~------------~~e~~~~~~~~~~~~pV~asGGi~~~~~~~~l~~i~~~~~a 223 (263)
T 1w8s_A 161 VAYAARIALELGADAMKIKY--T---G------------DPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEA 223 (263)
T ss_dssp HHHHHHHHHHHTCSEEEEEC--C---S------------SHHHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCEEEEcC--C---C------------CHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 22334566789999988762 1 1 156677777665334999999999 999988877 68
Q ss_pred CcCeeEEchHHhhCCch
Q 017176 229 GAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 229 Gad~VmiGRa~l~~P~l 245 (376)
||+|+.+||+++..|+.
T Consensus 224 GA~GvsvgraI~~~~dp 240 (263)
T 1w8s_A 224 GALGIAVGRNVWQRRDA 240 (263)
T ss_dssp TCCEEEESHHHHTSTTH
T ss_pred CCeEEEEehhhcCCcCH
Confidence 99999999999988874
|
| >3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00012 Score=70.65 Aligned_cols=134 Identities=5% Similarity=0.028 Sum_probs=99.7
Q ss_pred EEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCC
Q 017176 69 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVD 146 (376)
Q Consensus 69 vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~ 146 (376)
..+...+++.+.+.++.+.+.||..+.++.|++ ++.-.+++++||+.+ ++++.+...-+|+
T Consensus 133 ~~~~~~~~~~~~~~a~~~~~~G~~~~K~K~g~~-----------------~~~d~~~v~avR~a~g~~~~l~vDan~~~~ 195 (354)
T 3jva_A 133 ITLGIDEPNVMAQKAVEKVKLGFDTLKIKVGTG-----------------IEADIARVKAIREAVGFDIKLRLDANQAWT 195 (354)
T ss_dssp EEECSCCHHHHHHHHHHHHHTTCSEEEEECCSC-----------------HHHHHHHHHHHHHHHCTTSEEEEECTTCSC
T ss_pred EEeCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC-----------------HHHHHHHHHHHHHHcCCCCeEEEECCCCCC
Confidence 445567899999999888889999999987643 345567888888876 5788888887775
Q ss_pred CCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHH
Q 017176 147 DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL 226 (376)
Q Consensus 147 ~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l 226 (376)
. ++.+++ .+.+++.|+++|. . .+++.+++..+++++.. ++||++.+.+.+++++.+++
T Consensus 196 ~----~~a~~~-~~~L~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~l 253 (354)
T 3jva_A 196 P----KDAVKA-IQALADYQIELVE----Q------------PVKRRDLEGLKYVTSQV-NTTIMADESCFDAQDALELV 253 (354)
T ss_dssp H----HHHHHH-HHHTTTSCEEEEE----C------------CSCTTCHHHHHHHHHHC-SSEEEESTTCCSHHHHHHHH
T ss_pred H----HHHHHH-HHHHHhcCCCEEE----C------------CCChhhHHHHHHHHHhC-CCCEEEcCCcCCHHHHHHHH
Confidence 3 344444 4456778988886 1 11222467777777765 89999999999999999999
Q ss_pred H-cCcCeeEEchHHhh
Q 017176 227 R-KGAHHVMVGRAAYQ 241 (376)
Q Consensus 227 ~-~Gad~VmiGRa~l~ 241 (376)
+ ..+|.|++--.-.+
T Consensus 254 ~~~~~d~v~~k~~~~G 269 (354)
T 3jva_A 254 KKGTVDVINIKLMKCG 269 (354)
T ss_dssp HHTCCSEEEECHHHHT
T ss_pred HcCCCCEEEECchhcC
Confidence 8 67999998544433
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=98.00 E-value=6.5e-05 Score=68.85 Aligned_cols=153 Identities=14% Similarity=0.207 Sum_probs=99.9
Q ss_pred CCEEEEecCCCHHHHHHHHHHHHHCCCC--EEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEe
Q 017176 65 HPIVLQIGGSNLDNLAKATELANAYNYD--EINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKC 141 (376)
Q Consensus 65 ~p~~vQL~g~~~~~~~~aa~~~~~~G~d--~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKi 141 (376)
..+..+|...|...+.+..+.++++|+| .+|+--|.-+++. .|| -++++++|+.+ +.|+.+.+
T Consensus 28 ~~i~pSilsaD~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpni----t~G----------~~~v~~lr~~~p~~~ldvHL 93 (246)
T 3inp_A 28 IQINPSILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNL----TFG----------PMVLKALRDYGITAGMDVHL 93 (246)
T ss_dssp CEEEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCB----CCC----------HHHHHHHHHHTCCSCEEEEE
T ss_pred CeeehhhhcCChhhHHHHHHHHHHcCCCEEEEEecCCCcCcch----hcC----------HHHHHHHHHhCCCCeEEEEE
Confidence 3478888888988899999999999998 4566545434432 246 26677788777 78998887
Q ss_pred cCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCcc-----------ccC------------------------------
Q 017176 142 RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-----------LLN------------------------------ 180 (376)
Q Consensus 142 R~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~-----------~~~------------------------------ 180 (376)
-+ .+.+ +.++ . +.++|+|.|++|.-.. ..+
T Consensus 94 mv--~~p~---~~i~---~-~~~aGAd~itvH~Ea~~~~~~~i~~ir~~G~k~Gvalnp~Tp~e~l~~~l~~vD~VlvMs 164 (246)
T 3inp_A 94 MV--KPVD---ALIE---S-FAKAGATSIVFHPEASEHIDRSLQLIKSFGIQAGLALNPATGIDCLKYVESNIDRVLIMS 164 (246)
T ss_dssp EC--SSCH---HHHH---H-HHHHTCSEEEECGGGCSCHHHHHHHHHTTTSEEEEEECTTCCSGGGTTTGGGCSEEEEEC
T ss_pred ee--CCHH---HHHH---H-HHHcCCCEEEEccccchhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHhcCCEEEEee
Confidence 75 3322 2222 1 2358899999885310 000
Q ss_pred ---CCCCCCCCCCCcccHHHHHHHHhh----CCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017176 181 ---GISPAENRTIPPLKYEYYYALLRD----FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 181 ---g~~~~~~~~~~~~~~~~v~~~~~~----~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
|+++ ...-+..++-++++++. ..+++|.+.|||+ .+.+.++.+.|||.+.+||++...+.
T Consensus 165 V~PGfgG---Q~fi~~~l~KI~~lr~~~~~~~~~~~I~VDGGI~-~~ti~~~~~aGAD~~V~GSaIf~a~d 231 (246)
T 3inp_A 165 VNPGFGG---QKFIPAMLDKAKEISKWISSTDRDILLEIDGGVN-PYNIAEIAVCGVNAFVAGSAIFNSDS 231 (246)
T ss_dssp SCTTC-----CCCCTTHHHHHHHHHHHHHHHTSCCEEEEESSCC-TTTHHHHHTTTCCEEEESHHHHTSSC
T ss_pred ecCCCCC---cccchHHHHHHHHHHHHHHhcCCCeeEEEECCcC-HHHHHHHHHcCCCEEEEehHHhCCCC
Confidence 1110 00111123444444332 2368999999997 78999999999999999999887665
|
| >4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified} | Back alignment and structure |
|---|
Probab=97.97 E-value=7.7e-05 Score=73.62 Aligned_cols=135 Identities=11% Similarity=0.049 Sum_probs=99.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccc-cCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCcc
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSL-MLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDS 150 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l-~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~ 150 (376)
.+++.+++.++.+.+.||..+-++.|+|... ..|... ..+++...+++++||+.+ ++++.+...-+|+
T Consensus 143 ~~~e~~~~~a~~~~~~G~~~iKlK~g~~~~~-----~~g~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDaN~~~~---- 213 (412)
T 4e4u_A 143 DDPDLAAECAAENVKLGFTAVKFDPAGPYTA-----YSGHQLSLEVLDRCELFCRRVREAVGSKADLLFGTHGQMV---- 213 (412)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEECCSCCCBT-----TCCBCCCHHHHHHHHHHHHHHHHHHTTSSEEEECCCSCBC----
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCcc-----ccccccchhhHHHHHHHHHHHHHHhCCCCeEEEECCCCCC----
Confidence 5899999999988888999999999987531 112111 123677888999999987 5788887777775
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cC
Q 017176 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KG 229 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~G 229 (376)
.++.+++ .+.+++.|+++|.- .+++.+++..+++++.. ++||++.+.+.+++++.++++ ..
T Consensus 214 ~~~A~~~-~~~L~~~~i~~iEe----------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~a 275 (412)
T 4e4u_A 214 PSSAIRL-AKRLEKYDPLWFEE----------------PVPPGQEEAIAQVAKHT-SIPIATGERLTTKYEFHKLLQAGG 275 (412)
T ss_dssp HHHHHHH-HHHHGGGCCSEEEC----------------CSCSSCHHHHHHHHHTC-SSCEEECTTCCHHHHHHHHHHTTC
T ss_pred HHHHHHH-HHHhhhcCCcEEEC----------------CCChhhHHHHHHHHhhC-CCCEEecCccCCHHHHHHHHHcCC
Confidence 3344443 45567889988861 11223477777877764 899999999999999999998 56
Q ss_pred cCeeEE
Q 017176 230 AHHVMV 235 (376)
Q Consensus 230 ad~Vmi 235 (376)
+|.|++
T Consensus 276 ~d~v~~ 281 (412)
T 4e4u_A 276 ASILQL 281 (412)
T ss_dssp CSEECC
T ss_pred CCEEEe
Confidence 899887
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=97.97 E-value=3.7e-05 Score=69.86 Aligned_cols=155 Identities=19% Similarity=0.275 Sum_probs=96.6
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecC--CCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCC
Q 017176 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNC--GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG 144 (376)
Q Consensus 67 ~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~--gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g 144 (376)
++..|...|...+.+..+.+.+.|+|.|++-. |.-.++ . .+| .++++++++.++.|+.+-+-.
T Consensus 7 i~psila~D~~~l~~~i~~~~~~Gad~ihldi~DG~fvp~-~---~~g----------~~~v~~lr~~~~~~~~vhlmv- 71 (230)
T 1tqj_A 7 VAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPN-I---TIG----------PLIVDAIRPLTKKTLDVHLMI- 71 (230)
T ss_dssp EEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSC-B---CBC----------HHHHHHHGGGCCSEEEEEEES-
T ss_pred EEEEeeecCHhHHHHHHHHHHHcCCCEEEEEEEecCCCcc-h---hhh----------HHHHHHHHhhcCCcEEEEEEc-
Confidence 67778888888899999999999999865543 221111 1 123 267888888777777755444
Q ss_pred CCCCccHHHHHHHHHHHhhcCCccEEEEccC--ccc-----------cC---CC-----CC-------------------
Q 017176 145 VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR--KAL-----------LN---GI-----SP------------------- 184 (376)
Q Consensus 145 ~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r--~~~-----------~~---g~-----~~------------------- 184 (376)
.+.+.+.+ .+.++|+|.+++|.- ... .+ |. ++
T Consensus 72 -~dp~~~i~-------~~~~aGadgv~vh~e~~~~~~~~~~~~~i~~~g~~~gv~~~p~t~~e~~~~~~~~~D~v~~msv 143 (230)
T 1tqj_A 72 -VEPEKYVE-------DFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSV 143 (230)
T ss_dssp -SSGGGTHH-------HHHHHTCSEEEEECSTTTCTTHHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGGCSEEEEESS
T ss_pred -cCHHHHHH-------HHHHcCCCEEEECcccccchhHHHHHHHHHHcCCcEEEEEeCCCcHHHHHHHHhcCCEEEEEEe
Confidence 22222211 122467777777765 100 00 00 00
Q ss_pred ---CCCCCCCcccHHHHHHHHhhC----CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 185 ---AENRTIPPLKYEYYYALLRDF----PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 185 ---~~~~~~~~~~~~~v~~~~~~~----~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
.......+...+.++++++.. .++||.+-|||+. +++.++.+.|||++.+|++++..|+.
T Consensus 144 ~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~-~~~~~~~~aGad~vvvGSai~~a~d~ 210 (230)
T 1tqj_A 144 NPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKP-NNTWQVLEAGANAIVAGSAVFNAPNY 210 (230)
T ss_dssp CC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTTHHHHHHTCCEEEESHHHHTSSCH
T ss_pred ccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEECCcCH-HHHHHHHHcCCCEEEECHHHHCCCCH
Confidence 000111222355566655432 2799999999987 99999999999999999999987763
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.96 E-value=8.5e-06 Score=75.34 Aligned_cols=79 Identities=10% Similarity=-0.008 Sum_probs=58.9
Q ss_pred HHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHH
Q 017176 160 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~ 239 (376)
+.+++.|++.|.++.......+. ...++.+.++++.. ++||+++|+|.+.+++.++++.|||+|.+|+.+
T Consensus 37 ~~~~~~Ga~~i~v~d~~~~~~~~---------g~~~~~i~~i~~~~-~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~~~ 106 (266)
T 2w6r_A 37 VEVEKRGAGEILLTSIDRDGTKS---------GYDTEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLAGADKALAASVF 106 (266)
T ss_dssp HHHHHHTCSEEEEEETTTSSCSS---------CCCHHHHHHHGGGC-CSCEEEESCCCSTHHHHHHHHHTCSEEECCCCC
T ss_pred HHHHHCCCCEEEEEecCcccCCC---------cccHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCcHhhhhHHH
Confidence 34567999999997544211111 12377888887764 899999999999999999999999999999999
Q ss_pred h-h--CCchhhH
Q 017176 240 Y-Q--NPWYTLG 248 (376)
Q Consensus 240 l-~--~P~lf~~ 248 (376)
+ . +|+.+.+
T Consensus 107 ~~~~~~~~~~~~ 118 (266)
T 2w6r_A 107 HFREIDMRELKE 118 (266)
T ss_dssp ------CHHHHH
T ss_pred HhCCCCHHHHHH
Confidence 9 6 8987543
|
| >3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A | Back alignment and structure |
|---|
Probab=97.96 E-value=4.1e-05 Score=74.09 Aligned_cols=134 Identities=10% Similarity=0.069 Sum_probs=99.6
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecC
Q 017176 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRI 143 (376)
Q Consensus 66 p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~ 143 (376)
|+...+...+++.+.+.++.+.+.||..+.++.|| +++.-.+.+++||+.+ ++++.+...-
T Consensus 131 ~~~~~~~~~~~~~~~~~a~~~~~~G~~~~K~K~G~-----------------~~~~d~~~v~avR~~~g~~~~l~vDan~ 193 (356)
T 3ro6_B 131 PTSVTIGIKPVEETLAEAREHLALGFRVLKVKLCG-----------------DEEQDFERLRRLHETLAGRAVVRVDPNQ 193 (356)
T ss_dssp EBCEEECSCCHHHHHHHHHHHHHTTCCEEEEECCS-----------------CHHHHHHHHHHHHHHHTTSSEEEEECTT
T ss_pred eeeEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeCC-----------------CHHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 44456667789999999998888999999998764 3556677888898876 5789999888
Q ss_pred CCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHH
Q 017176 144 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 223 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~ 223 (376)
+|+. ++.+++ .+.+++.|+++|. . .+++.+++.++++.+.. ++||++++.+.+++++.
T Consensus 194 ~~~~----~~a~~~-~~~l~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~ 251 (356)
T 3ro6_B 194 SYDR----DGLLRL-DRLVQELGIEFIE----Q------------PFPAGRTDWLRALPKAI-RRRIAADESLLGPADAF 251 (356)
T ss_dssp CCCH----HHHHHH-HHHHHHTTCCCEE----C------------CSCTTCHHHHHTSCHHH-HHTEEESTTCCSHHHHH
T ss_pred CCCH----HHHHHH-HHHHHhcCCCEEE----C------------CCCCCcHHHHHHHHhcC-CCCEEeCCcCCCHHHHH
Confidence 8863 344443 3456778998885 1 11222366666655543 79999999999999999
Q ss_pred HHHH-c-CcCeeEEchH
Q 017176 224 AALR-K-GAHHVMVGRA 238 (376)
Q Consensus 224 ~~l~-~-Gad~VmiGRa 238 (376)
++++ . .+|.|++--+
T Consensus 252 ~~~~~~~~~d~v~~k~~ 268 (356)
T 3ro6_B 252 ALAAPPAACGIFNIKLM 268 (356)
T ss_dssp HHHSSSCSCSEEEECHH
T ss_pred HHHhcCCcCCEEEEccc
Confidence 9998 5 6999998444
|
| >3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A | Back alignment and structure |
|---|
Probab=97.93 E-value=8.1e-05 Score=67.51 Aligned_cols=53 Identities=17% Similarity=0.249 Sum_probs=46.3
Q ss_pred cHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchhh
Q 017176 194 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247 (376)
Q Consensus 194 ~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~ 247 (376)
+.+.+.++++...++||+.-|||+|++++.++.+ |||+|.+|+++..||..+.
T Consensus 173 ~~~~v~~ir~~~~~~pv~vGfGI~~~e~a~~~~~-gAD~VVVGSai~~~~~~~~ 225 (235)
T 3w01_A 173 DVSKVQAVSEHLTETQLFYGGGISSEQQATEMAA-IADTIIVGDIIYKDIKKAL 225 (235)
T ss_dssp CHHHHHHHHTTCSSSEEEEESCCCSHHHHHHHHT-TSSEEEECTHHHHCHHHHH
T ss_pred CHHHHHHHHHhcCCCCEEEECCcCCHHHHHHHHc-CCCEEEECCceecCHHHHH
Confidence 4778888776543899999999999999999888 9999999999999998753
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00018 Score=65.10 Aligned_cols=145 Identities=15% Similarity=0.243 Sum_probs=92.1
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC
Q 017176 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 143 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~ 143 (376)
+.++.+-|+.++|+.+.+. +.++|+|+|-+|.+.+. .+ +.++++.+++. +..+.+-+.+
T Consensus 64 ~~~~~v~lmv~d~~~~i~~---~~~agad~v~vH~~~~~---------------~~--~~~~~~~i~~~-g~~igv~~~p 122 (228)
T 1h1y_A 64 KAYLDCHLMVTNPSDYVEP---LAKAGASGFTFHIEVSR---------------DN--WQELIQSIKAK-GMRPGVSLRP 122 (228)
T ss_dssp CSEEEEEEESSCGGGGHHH---HHHHTCSEEEEEGGGCT---------------TT--HHHHHHHHHHT-TCEEEEEECT
T ss_pred CCcEEEEEEecCHHHHHHH---HHHcCCCEEEECCCCcc---------------cH--HHHHHHHHHHc-CCCEEEEEeC
Confidence 4688999999998766443 44579999999864221 11 13455555543 5666665544
Q ss_pred CCCCCccHHHHHHHHHHHhhcC--CccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHH
Q 017176 144 GVDDHDSYNQLCDFIYKVSSLS--PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE 221 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~~--Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~d 221 (376)
..+. +.+ ..+ .+. ++|+|.+-+......|. ...+..++.+.++++...++||++.|||+. ++
T Consensus 123 ~t~~-e~~-------~~~-~~~~~~~d~vl~~sv~pg~~g~------~~~~~~l~~i~~~~~~~~~~pi~v~GGI~~-~n 186 (228)
T 1h1y_A 123 GTPV-EEV-------FPL-VEAENPVELVLVMTVEPGFGGQ------KFMPEMMEKVRALRKKYPSLDIEVDGGLGP-ST 186 (228)
T ss_dssp TSCG-GGG-------HHH-HHSSSCCSEEEEESSCTTCSSC------CCCGGGHHHHHHHHHHCTTSEEEEESSCST-TT
T ss_pred CCCH-HHH-------HHH-HhcCCCCCEEEEEeecCCCCcc------cCCHHHHHHHHHHHHhcCCCCEEEECCcCH-HH
Confidence 3221 111 111 234 89999885433211111 112233566677766544899999999987 89
Q ss_pred HHHHHHcCcCeeEEchHHhhCCch
Q 017176 222 VNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 222 a~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
+.++++.|||+|.+|++++..|+.
T Consensus 187 i~~~~~aGaD~vvvGsai~~~~d~ 210 (228)
T 1h1y_A 187 IDVAASAGANCIVAGSSIFGAAEP 210 (228)
T ss_dssp HHHHHHHTCCEEEESHHHHTSSCH
T ss_pred HHHHHHcCCCEEEECHHHHCCCCH
Confidence 989988999999999999987763
|
| >1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=9.6e-05 Score=71.68 Aligned_cols=127 Identities=12% Similarity=0.055 Sum_probs=91.7
Q ss_pred EEEEecC-CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecC
Q 017176 67 IVLQIGG-SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRI 143 (376)
Q Consensus 67 ~~vQL~g-~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~ 143 (376)
....+.. .+++++.+.|+++.+.||+.|.++.+ | +...+++++||+.+ ++++.+...-
T Consensus 132 ~~~~~g~~~~~~~~~~~a~~~~~~Gf~~vKik~~-~------------------~~~~e~v~avr~~~g~~~~l~vDan~ 192 (368)
T 1sjd_A 132 CGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIE-P------------------GWDVEPVRAVRERFGDDVLLQVDANT 192 (368)
T ss_dssp BEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECB-T------------------TBSHHHHHHHHHHHCTTSEEEEECTT
T ss_pred ceEEeeCCCCHHHHHHHHHHHHHhCccEEEEecC-c------------------hhHHHHHHHHHHhcCCCceEEEeccC
Confidence 3344432 48999999999998999999999853 1 23356777777766 4677777776
Q ss_pred CCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHH
Q 017176 144 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 223 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~ 223 (376)
+|+.. + +++ .+.+++.|+++|. . .+++.+++..+++.+.. ++||++.+.+.++++++
T Consensus 193 ~~~~~----~-~~~-~~~l~~~~i~~iE----~------------P~~~~~~~~~~~l~~~~-~ipIa~dE~~~~~~~~~ 249 (368)
T 1sjd_A 193 AYTLG----D-APQ-LARLDPFGLLLIE----Q------------PLEEEDVLGHAELARRI-QTPICLDESIVSARAAA 249 (368)
T ss_dssp CCCGG----G-HHH-HHTTGGGCCSEEE----C------------CSCTTCHHHHHHHHTTC-SSCEEESTTCCSHHHHH
T ss_pred CCCHH----H-HHH-HHHHHhcCCCeEe----C------------CCChhhHHHHHHHHHhC-CCCEEECCCcCCHHHHH
Confidence 77642 3 333 3456788999875 1 11223477777777664 89999999999999999
Q ss_pred HHHH-cCcCeeEE
Q 017176 224 AALR-KGAHHVMV 235 (376)
Q Consensus 224 ~~l~-~Gad~Vmi 235 (376)
++++ ..+|.|++
T Consensus 250 ~~i~~~~~d~v~i 262 (368)
T 1sjd_A 250 DAIKLGAVQIVNI 262 (368)
T ss_dssp HHHHTTCCSEEEE
T ss_pred HHHHcCCCCEEEe
Confidence 9998 56899998
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00019 Score=64.11 Aligned_cols=154 Identities=13% Similarity=0.218 Sum_probs=88.6
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecC--CC-CCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC
Q 017176 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNC--GC-PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 143 (376)
Q Consensus 67 ~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~--gc-P~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~ 143 (376)
+...|...|+..+.++++.+.+.|+|.+.+-. |. +. + . .+| .++++++++.++.|+.+-+-+
T Consensus 6 ~~~~i~a~D~~~~~~~~~~~~~~G~~~i~~~~~dg~~~~-~-~---~~g----------~~~i~~i~~~~~~~~~v~l~v 70 (220)
T 2fli_A 6 IAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVP-N-I---SFG----------ADVVASMRKHSKLVFDCHLMV 70 (220)
T ss_dssp EEEBGGGSCGGGHHHHHHHHHHTTCCEEEEEEEBSSSSS-C-B---CBC----------HHHHHHHHTTCCSEEEEEEES
T ss_pred EEEEEEeCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCC-c-c---ccC----------HHHHHHHHHhCCCCEEEEEee
Confidence 45566777888899999999999999866643 33 11 1 0 112 355666676666665554322
Q ss_pred CCCCCccHHHHHHHHHHHhhcCCccEEEEccCccc----------cCC---------CC---------------------
Q 017176 144 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL----------LNG---------IS--------------------- 183 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~----------~~g---------~~--------------------- 183 (376)
.+..+. ++ .+.++|+|.+++|+.... ..| .+
T Consensus 71 --~d~~~~---i~----~~~~~gad~v~vh~~~~~~~~~~~~~~~~~g~~i~~~~~~~t~~e~~~~~~~~~d~vl~~~~~ 141 (220)
T 2fli_A 71 --VDPERY---VE----AFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVN 141 (220)
T ss_dssp --SSGGGG---HH----HHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTSEEEEEECTTSCGGGGGGGTTTCSEEEEESSC
T ss_pred --cCHHHH---HH----HHHHcCCCEEEEccCccccHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHhhCCEEEEEEEC
Confidence 222111 11 122467777777753100 000 00
Q ss_pred -CCCCCCCCcccHHHHHHHHhhC----CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 184 -PAENRTIPPLKYEYYYALLRDF----PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 184 -~~~~~~~~~~~~~~v~~~~~~~----~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
+.+.....+..++.+.++++.. .++||++.|||+ ++++.++++.|+|+|.+||+++..+..
T Consensus 142 ~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~-~~~~~~~~~~Gad~vvvGsai~~~~d~ 207 (220)
T 2fli_A 142 PGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVD-NKTIRACYEAGANVFVAGSYLFKASDL 207 (220)
T ss_dssp TTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCC-TTTHHHHHHHTCCEEEESHHHHTSSCH
T ss_pred CCCcccccCHHHHHHHHHHHHHHHhcCCCceEEEECcCC-HHHHHHHHHcCCCEEEEChHHhCCCCH
Confidence 0000001111123344443322 268999999998 899988888999999999999887663
|
| >3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP} | Back alignment and structure |
|---|
Probab=97.87 E-value=8.1e-05 Score=73.70 Aligned_cols=152 Identities=11% Similarity=0.051 Sum_probs=104.3
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCcc------ccCCCCcccccc--CCHHHHHHHHHHHhccc--Cc
Q 017176 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPK------VAGHGCFGVSLM--LDPKFVGEAMSVIAANT--NV 135 (376)
Q Consensus 66 p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~------v~r~g~yG~~l~--~~~~~~~eiv~~v~~~~--~~ 135 (376)
|+-..+.+.+++++++.++.+.+.||..|-+..|++... ...... |..+. ...+...+++++||+.+ ++
T Consensus 145 ~~y~~~~~~~~e~~~~~a~~~~~~G~~~iKlKvG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~e~v~avR~avG~d~ 223 (422)
T 3tji_A 145 PAYSHASGETLEALFASVDALIAQGYRHIRCQLGFYGGTPSALHAPDNPTP-GAWFDQQEYMSNTVEMFHALREKYGWKL 223 (422)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEESCCCBCGGGSCCCSSCCS-SEECCHHHHHHHHHHHHHHHHHHHCSSS
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeeccCCcccccccccccccc-cccccchhHHHHHHHHHHHHHHHcCCCC
Confidence 443345567899999999988889999999999874210 000011 21111 12567788999999986 57
Q ss_pred cEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecC
Q 017176 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 215 (376)
Q Consensus 136 pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGg 215 (376)
++.+...-+|+. ++.+++ ++.+++.|+++|.= .+++.+++.++++++.. ++||++.+.
T Consensus 224 ~L~vDaN~~~~~----~~A~~~-~~~Le~~~i~~iEq----------------P~~~~d~~~~~~l~~~~-~iPIa~dE~ 281 (422)
T 3tji_A 224 HILHDVHERLFP----QQAVQL-AKQLEPFQPYFIED----------------ILPPQQSAWLEQVRQQS-CVPLALGEL 281 (422)
T ss_dssp EEEEECTTCSCH----HHHHHH-HHHHGGGCCSEEEC----------------CSCGGGGGGHHHHHHHC-CCCEEECTT
T ss_pred EEEEECCCCCCH----HHHHHH-HHHHHhhCCCeEEC----------------CCChhhHHHHHHHHhhC-CCCEEEeCC
Confidence 888888877753 344443 44567889988751 11222355566777664 899999999
Q ss_pred CCCHHHHHHHHH-cCcCeeEEchHHh
Q 017176 216 INTVDEVNAALR-KGAHHVMVGRAAY 240 (376)
Q Consensus 216 I~s~~da~~~l~-~Gad~VmiGRa~l 240 (376)
+.+++++.++++ ..+|.|++--+-.
T Consensus 282 ~~~~~~~~~ll~~ga~d~v~~k~~~~ 307 (422)
T 3tji_A 282 FNNPAEWHDLIVNRRIDFIRCHVSQI 307 (422)
T ss_dssp CCSGGGTHHHHHTTCCSEECCCGGGG
T ss_pred cCCHHHHHHHHhcCCCCEEecCcccc
Confidence 999999999998 5699998744433
|
| >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=4e-05 Score=68.88 Aligned_cols=74 Identities=9% Similarity=0.065 Sum_probs=54.9
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
.+.|+|+|.+......... . ..++..|+.+.++.+.. ++||++.||| +++++.++++.|||+|++|++++.+
T Consensus 127 ~~~gaD~i~~~~~f~~~~~-~-----g~~~~~~~~l~~~~~~~-~~pvia~GGI-~~~nv~~~~~~Ga~gv~vgs~i~~~ 198 (221)
T 1yad_A 127 EKEDADYVLFGHVFETDCK-K-----GLEGRGVSLLSDIKQRI-SIPVIAIGGM-TPDRLRDVKQAGADGIAVMSGIFSS 198 (221)
T ss_dssp HHTTCSEEEEECCC----------------CHHHHHHHHHHHC-CSCEEEESSC-CGGGHHHHHHTTCSEEEESHHHHTS
T ss_pred HhCCCCEEEECCccccCCC-C-----CCCCCCHHHHHHHHHhC-CCCEEEECCC-CHHHHHHHHHcCCCEEEEhHHhhCC
Confidence 3689999998653111000 0 00234578888887765 8999999999 9999999999999999999999887
Q ss_pred Cc
Q 017176 243 PW 244 (376)
Q Consensus 243 P~ 244 (376)
++
T Consensus 199 ~d 200 (221)
T 1yad_A 199 AE 200 (221)
T ss_dssp SS
T ss_pred CC
Confidence 66
|
| >3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00044 Score=67.20 Aligned_cols=123 Identities=14% Similarity=0.132 Sum_probs=93.0
Q ss_pred CHHHHHHHHHHHHHC-CCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccH
Q 017176 75 NLDNLAKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSY 151 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~-G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~ 151 (376)
+++.+.+.++.+.+. ||..+.+..|++ +++.-.+.+++||+.+ +.++.|...-+|+.
T Consensus 151 ~~~~~~~~a~~~~~~~G~~~~K~Kvg~~----------------~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~---- 210 (372)
T 3tj4_A 151 TLEDLLAGSARAVEEDGFTRLKIKVGHD----------------DPNIDIARLTAVRERVDSAVRIAIDGNGKWDL---- 210 (372)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEEECCCS----------------SHHHHHHHHHHHHHHSCTTCEEEEECTTCCCH----
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCCC----------------CHHHHHHHHHHHHHHcCCCCcEEeeCCCCCCH----
Confidence 789998888888777 999999987654 2445578899999887 57888888877763
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCc
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGA 230 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Ga 230 (376)
++.+++ .+.+++.|+++|. . .+++.+++..+++.+.. ++||++.+.+.+.+++.++++ ..+
T Consensus 211 ~~a~~~-~~~l~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~ 272 (372)
T 3tj4_A 211 PTCQRF-CAAAKDLDIYWFE----E------------PLWYDDVTSHARLARNT-SIPIALGEQLYTVDAFRSFIDAGAV 272 (372)
T ss_dssp HHHHHH-HHHTTTSCEEEEE----S------------CSCTTCHHHHHHHHHHC-SSCEEECTTCCSHHHHHHHHHTTCC
T ss_pred HHHHHH-HHHHhhcCCCEEE----C------------CCCchhHHHHHHHHhhc-CCCEEeCCCccCHHHHHHHHHcCCC
Confidence 344443 4456778888875 1 11223477777777765 899999999999999999998 568
Q ss_pred CeeEE
Q 017176 231 HHVMV 235 (376)
Q Consensus 231 d~Vmi 235 (376)
|.|++
T Consensus 273 d~v~~ 277 (372)
T 3tj4_A 273 AYVQP 277 (372)
T ss_dssp SEECC
T ss_pred CEEEe
Confidence 98876
|
| >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00034 Score=65.05 Aligned_cols=162 Identities=14% Similarity=0.126 Sum_probs=89.1
Q ss_pred EEEEecCC--CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCcccccc----------CCHHHHHHHHHHHhcccC
Q 017176 67 IVLQIGGS--NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLM----------LDPKFVGEAMSVIAANTN 134 (376)
Q Consensus 67 ~~vQL~g~--~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~----------~~~~~~~eiv~~v~~~~~ 134 (376)
++.=|... +.+...+.++.+.+. +|.|||. -|...... + |--.. -+.+.+.++++++|+.++
T Consensus 18 li~~i~~GdP~~~~~~~~~~~l~~~-aD~IElG--~PfsdP~a-d--Gp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~~~ 91 (271)
T 1ujp_A 18 LIPYLTAGFPSREGFLQAVEEVLPY-ADLLEIG--LPYSDPLG-D--GPVIQRASELALRKGMSVQGALELVREVRALTE 91 (271)
T ss_dssp EEEEEETTSSCHHHHHHHHHHHGGG-CSSEEEE--CCCCC-------CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCC
T ss_pred EEEEecCCCCChHHHHHHHHHHHhc-CCEEEEC--CCCCCccc-c--cHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Confidence 44444433 456777788888888 9999995 34321100 0 11110 356777899999998888
Q ss_pred ccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccC--------------------------cc-----------
Q 017176 135 VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR--------------------------KA----------- 177 (376)
Q Consensus 135 ~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r--------------------------~~----------- 177 (376)
+|+.+ + ++.+........+++.. +.++|+|.+++-.- +.
T Consensus 92 ~Pii~-m--~y~n~v~~~g~~~f~~~-~~~aG~dGviv~Dl~~ee~~~~~~~~~~~gl~~i~liap~s~~eri~~ia~~~ 167 (271)
T 1ujp_A 92 KPLFL-M--TYLNPVLAWGPERFFGL-FKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHA 167 (271)
T ss_dssp SCEEE-E--CCHHHHHHHCHHHHHHH-HHHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEECEECTTCCHHHHHHHHTTC
T ss_pred CCEEE-E--ecCcHHHHhhHHHHHHH-HHHcCCCEEEecCCCHHHHHHHHHHHHHcCCceEEEeCCCCCHHHHHHHHHhC
Confidence 99877 2 21110000000112111 22355554443110 00
Q ss_pred -------ccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 178 -------LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 178 -------~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
...|.++... .......+.+.++++. .++||++.|||+|++++.++ .|||+|.+|+++...
T Consensus 168 ~gfiy~vs~~G~TG~~~-~~~~~~~~~v~~vr~~-~~~Pv~vGfGI~t~e~a~~~--~~ADgVIVGSAi~~~ 235 (271)
T 1ujp_A 168 TGFVYAVSVTGVTGMRE-RLPEEVKDLVRRIKAR-TALPVAVGFGVSGKATAAQA--AVADGVVVGSALVRA 235 (271)
T ss_dssp CSCEEEECC-------------CCHHHHHHHHTT-CCSCEEEESCCCSHHHHHHH--TTSSEEEECHHHHHH
T ss_pred CCCEEEEecCcccCCCC-CCCccHHHHHHHHHhh-cCCCEEEEcCCCCHHHHHHh--cCCCEEEEChHHhcc
Confidence 0011112111 1111124667777664 58999999999999999997 799999999998754
|
| >3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0001 Score=65.71 Aligned_cols=72 Identities=13% Similarity=0.085 Sum_probs=56.4
Q ss_pred cCCccEEEEccC--ccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017176 164 LSPTRHFIIHSR--KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 164 ~~Gvd~I~vh~r--~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
..|+..+.+++. +...+| ..++.+.++.+. .++|||+.||+.+++++.++++.|||+|++|++++.
T Consensus 141 ~~~~~~vli~~~~~~g~~~g-----------~~~~~i~~~~~~-~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~ 208 (237)
T 3cwo_X 141 KRGAGEILLTSIDRDGTKSG-----------YDTEMIRFVRPL-TTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHF 208 (237)
T ss_dssp HHTCSEEEEEETTTTTCCSC-----------CCHHHHHHHGGG-CCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHT
T ss_pred hcCCCeEEEEecCCCCcccc-----------ccHHHHHHHHHh-cCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHc
Confidence 467777777764 222112 126677777665 489999999999999999999999999999999999
Q ss_pred CCchhh
Q 017176 242 NPWYTL 247 (376)
Q Consensus 242 ~P~lf~ 247 (376)
+||.+.
T Consensus 209 ~~~~~~ 214 (237)
T 3cwo_X 209 REIDVR 214 (237)
T ss_dssp TSSCHH
T ss_pred CCCCHH
Confidence 999853
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00042 Score=62.51 Aligned_cols=143 Identities=15% Similarity=0.191 Sum_probs=86.4
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCC--CCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe
Q 017176 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCG--CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 141 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~g--cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 141 (376)
+.|+.+-++-++++.+.+. +.++|+|+|-+|.. .+ .. ..++++.+++. +..+.+-+
T Consensus 68 ~~~~~v~l~vnd~~~~v~~---~~~~Gad~v~vh~~~~~~---------------~~---~~~~~~~~~~~-g~~ig~~~ 125 (230)
T 1rpx_A 68 DLPLDVHLMIVEPDQRVPD---FIKAGADIVSVHCEQSST---------------IH---LHRTINQIKSL-GAKAGVVL 125 (230)
T ss_dssp CSCEEEEEESSSHHHHHHH---HHHTTCSEEEEECSTTTC---------------SC---HHHHHHHHHHT-TSEEEEEE
T ss_pred CCcEEEEEEecCHHHHHHH---HHHcCCCEEEEEecCccc---------------hh---HHHHHHHHHHc-CCcEEEEe
Confidence 5688899998998755444 45689999999853 21 11 23445555443 55555555
Q ss_pred cCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC----CCCeEEEecCCC
Q 017176 142 RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF----PDLTFTLNGGIN 217 (376)
Q Consensus 142 R~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~----~~ipVi~nGgI~ 217 (376)
..+.+. +.+ ..+ ..++|+|.+-+......|.. ..+..++.+.++++.. .++|+++.|||+
T Consensus 126 ~p~t~~-e~~-------~~~--~~~~d~vl~~~~~pg~~g~~------~~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI~ 189 (230)
T 1rpx_A 126 NPGTPL-TAI-------EYV--LDAVDLVLIMSVNPGFGGQS------FIESQVKKISDLRKICAERGLNPWIEVDGGVG 189 (230)
T ss_dssp CTTCCG-GGG-------TTT--TTTCSEEEEESSCTTCSSCC------CCTTHHHHHHHHHHHHHHHTCCCEEEEESSCC
T ss_pred CCCCCH-HHH-------HHH--HhhCCEEEEEEEcCCCCCcc------ccHHHHHHHHHHHHHHHhcCCCceEEEECCCC
Confidence 544221 111 111 35799984433221111211 1111234444444332 279999999998
Q ss_pred CHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 218 TVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 218 s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
++++.++++.|||+|.+|+++...++.
T Consensus 190 -~~n~~~~~~aGad~vvvgSaI~~a~dp 216 (230)
T 1rpx_A 190 -PKNAYKVIEAGANALVAGSAVFGAPDY 216 (230)
T ss_dssp -TTTHHHHHHHTCCEEEESHHHHTSSCH
T ss_pred -HHHHHHHHHcCCCEEEEChhhhCCCCH
Confidence 889988888999999999999987663
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0005 Score=60.83 Aligned_cols=140 Identities=16% Similarity=0.149 Sum_probs=85.6
Q ss_pred CCCEEEEecCCC-HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017176 64 QHPIVLQIGGSN-LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 64 ~~p~~vQL~g~~-~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
+.|+++-+...| ++.+. +.+.++|+|+|-+|.... .+.+.++++.+++. +.++.+-+.
T Consensus 53 ~~~i~~~l~~~di~~~~~---~~a~~~Gad~v~vh~~~~-----------------~~~~~~~~~~~~~~-g~~~gv~~~ 111 (207)
T 3ajx_A 53 DKIVFADMKTMDAGELEA---DIAFKAGADLVTVLGSAD-----------------DSTIAGAVKAAQAH-NKGVVVDLI 111 (207)
T ss_dssp TSEEEEEEEECSCHHHHH---HHHHHTTCSEEEEETTSC-----------------HHHHHHHHHHHHHH-TCEEEEECT
T ss_pred CCeEEEEEEecCccHHHH---HHHHhCCCCEEEEeccCC-----------------hHHHHHHHHHHHHc-CCceEEEEe
Confidence 567887776667 77655 566778999999885322 12234445554432 444434222
Q ss_pred CCCCCCccHHHHHHHHHHHhhcCCccEEEEc-cCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHH
Q 017176 143 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH-SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE 221 (376)
Q Consensus 143 ~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh-~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~d 221 (376)
+++ +..+.++ .+++.|+|++.++ +.+....|. .+.. +.++++.+. ++||++.|||+ +++
T Consensus 112 -s~~---~p~~~~~----~~~~~g~d~v~~~~~~~~~~~g~--------~~~~-~~i~~~~~~--~~pi~v~GGI~-~~~ 171 (207)
T 3ajx_A 112 -GIE---DKATRAQ----EVRALGAKFVEMHAGLDEQAKPG--------FDLN-GLLAAGEKA--RVPFSVAGGVK-VAT 171 (207)
T ss_dssp -TCS---SHHHHHH----HHHHTTCSEEEEECCHHHHTSTT--------CCTH-HHHHHHHHH--TSCEEEESSCC-GGG
T ss_pred -cCC---ChHHHHH----HHHHhCCCEEEEEecccccccCC--------CchH-HHHHHhhCC--CCCEEEECCcC-HHH
Confidence 221 2223221 1235689999555 333222221 1112 445555443 78999999997 889
Q ss_pred HHHHHHcCcCeeEEchHHhhCCc
Q 017176 222 VNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 222 a~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
+.++++.|||+|.+||+++..+.
T Consensus 172 ~~~~~~aGad~vvvGsaI~~~~d 194 (207)
T 3ajx_A 172 IPAVQKAGAEVAVAGGAIYGAAD 194 (207)
T ss_dssp HHHHHHTTCSEEEESHHHHTSSS
T ss_pred HHHHHHcCCCEEEEeeeccCCCC
Confidence 99999999999999999988665
|
| >4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ... | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0019 Score=58.95 Aligned_cols=150 Identities=15% Similarity=0.192 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC-----------
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI----------- 143 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~----------- 143 (376)
+|..+ |+ ..++|+++|.+- +....|||++ +-++++++.+++||.-|==+
T Consensus 65 dp~~i---A~-~~~~GA~aiSVL--------Td~~~F~Gs~--------~~L~~vr~~v~lPvLrKDFiid~yQI~eAr~ 124 (258)
T 4a29_A 65 DPIEY---AK-FMERYAVGLSIT--------TEEKYFNGSY--------ETLRKIASSVSIPILMSDFIVKESQIDDAYN 124 (258)
T ss_dssp CHHHH---HH-HHTTTCSEEEEE--------CCSTTTCCCH--------HHHHHHHTTCSSCEEEESCCCSHHHHHHHHH
T ss_pred CHHHH---HH-HHhCCCeEEEEe--------CCCCCCCCCH--------HHHHHHHHhcCCCEeeccccccHHHHHHHHH
Confidence 56544 33 335799998774 2234467765 34677888899999877211
Q ss_pred -CCCCC------ccHHHHHHHHHHHhhcCCccEE-EEccCccc----cCCC--CCCCCCCCC--cccHHHHHHHHhhCC-
Q 017176 144 -GVDDH------DSYNQLCDFIYKVSSLSPTRHF-IIHSRKAL----LNGI--SPAENRTIP--PLKYEYYYALLRDFP- 206 (376)
Q Consensus 144 -g~~~~------~~~~~~~~~i~~~~e~~Gvd~I-~vh~r~~~----~~g~--~~~~~~~~~--~~~~~~v~~~~~~~~- 206 (376)
|-|-. -+-.++.++ ...+.+.|.+.+ .||..... .-|. -+-+++... ..+.+...++....|
T Consensus 125 ~GADaILLI~a~L~~~~l~~l-~~~A~~lGl~~LvEVh~~~El~rAl~~~a~iIGINNRnL~tf~vdl~~t~~L~~~ip~ 203 (258)
T 4a29_A 125 LGADTVLLIVKILTERELESL-LEYARSYGMEPLILINDENDLDIALRIGARFIGIMSRDFETGEINKENQRKLISMIPS 203 (258)
T ss_dssp HTCSEEEEEGGGSCHHHHHHH-HHHHHHTTCCCEEEESSHHHHHHHHHTTCSEEEECSBCTTTCCBCHHHHHHHHTTSCT
T ss_pred cCCCeeehHHhhcCHHHHHHH-HHHHHHHhHHHHHhcchHHHHHHHhcCCCcEEEEeCCCccccccCHHHHHHHHhhCCC
Confidence 11100 011112221 223344565543 35543210 0010 012223222 234555667776665
Q ss_pred CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 207 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 207 ~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
++.+|+-+||.+++|+.++.+.|+|+|.||.+++.+|+-
T Consensus 204 ~~~~VsESGI~t~~dv~~l~~~G~~a~LVGealmr~~d~ 242 (258)
T 4a29_A 204 NVVKVAKLGISERNEIEELRKLGVNAFLISSSLMRNPEK 242 (258)
T ss_dssp TSEEEEEESSCCHHHHHHHHHTTCCEEEECHHHHHCTTH
T ss_pred CCEEEEcCCCCCHHHHHHHHHCCCCEEEECHHHhCCCcH
Confidence 688999999999999999999999999999999999973
|
| >3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00013 Score=71.40 Aligned_cols=124 Identities=13% Similarity=0.089 Sum_probs=94.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCcc
Q 017176 73 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDS 150 (376)
Q Consensus 73 g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~ 150 (376)
|.+++++++.++.+.+.||+.+.++.|+ +++.-.+.+++||+.+ +.++.|...-+|+.
T Consensus 153 g~~~e~~~~~a~~~~~~G~~~iKlK~g~-----------------~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~--- 212 (392)
T 3ddm_A 153 GINPENPEDVVARKAAEGYRAFKLKVGF-----------------DDARDVRNALHVRELLGAATPLMADANQGWDL--- 212 (392)
T ss_dssp EECSSSHHHHHHHHHHHTCCCEEEECSS-----------------CHHHHHHHHHHHHHHHCSSSCEEEECTTCCCH---
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCC-----------------CHHHHHHHHHHHHHhcCCCceEEEeCCCCCCH---
Confidence 4457889999998888899999997653 3566778899999886 57899988888863
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCccc-HHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-c
Q 017176 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK-YEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-K 228 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~-~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~ 228 (376)
++.+++ .+.+++.|+++|. . .+++.+ ++..+++++.. ++||.+.+.+.+.+++.++++ .
T Consensus 213 -~~A~~~-~~~L~~~~i~~iE----e------------P~~~~d~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~ 273 (392)
T 3ddm_A 213 -PRARQM-AQRLGPAQLDWLE----E------------PLRADRPAAEWAELAQAA-PMPLAGGENIAGVAAFETALAAR 273 (392)
T ss_dssp -HHHHHH-HHHHGGGCCSEEE----C------------CSCTTSCHHHHHHHHHHC-SSCEEECTTCCSHHHHHHHHHHT
T ss_pred -HHHHHH-HHHHHHhCCCEEE----C------------CCCccchHHHHHHHHHhc-CCCEEeCCCCCCHHHHHHHHHcC
Confidence 344443 4556788999886 1 112234 66677777765 899999999999999999998 5
Q ss_pred CcCeeEE
Q 017176 229 GAHHVMV 235 (376)
Q Consensus 229 Gad~Vmi 235 (376)
.+|.|++
T Consensus 274 a~d~v~~ 280 (392)
T 3ddm_A 274 SLRVMQP 280 (392)
T ss_dssp CEEEECC
T ss_pred CCCEEEe
Confidence 6888876
|
| >3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0005 Score=67.29 Aligned_cols=138 Identities=9% Similarity=0.056 Sum_probs=102.0
Q ss_pred CEEEEec----CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEE-
Q 017176 66 PIVLQIG----GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVS- 138 (376)
Q Consensus 66 p~~vQL~----g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~- 138 (376)
|+-..+. ..+++.+++.++.+.+.||+.+.++.|+ +++.-.+.+++||+.+ ++++.
T Consensus 129 ~~y~t~~~~~~~~~~e~~~~~a~~~~~~G~~~~KiKvG~-----------------~~~~d~~~v~avR~a~g~~~~l~~ 191 (391)
T 3gd6_A 129 KVCYPIFRHRFSEEVESNLDVVRQKLEQGFDVFRLYVGK-----------------NLDADEEFLSRVKEEFGSRVRIKS 191 (391)
T ss_dssp EBCEEECCCSSTTHHHHHHHHHHHHHHTTCCEEEEECSS-----------------CHHHHHHHHHHHHHHHGGGCEEEE
T ss_pred EeeEEecccccCCCHHHHHHHHHHHHHcCCCEEEEeeCC-----------------CHHHHHHHHHHHHHHcCCCCcEEE
Confidence 4445555 5679999999999888999999998765 2456678888998876 56788
Q ss_pred EEecCCCCCCccHHHHHHHHHHHhhcCCc--cEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCC
Q 017176 139 VKCRIGVDDHDSYNQLCDFIYKVSSLSPT--RHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 216 (376)
Q Consensus 139 vKiR~g~~~~~~~~~~~~~i~~~~e~~Gv--d~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI 216 (376)
+...-+|+ .++.+++ .+.+++.|+ ++|. . .+++.+++.++++++.. ++|| ...+
T Consensus 192 vDan~~~~----~~~A~~~-~~~l~~~~i~~~~iE----q------------P~~~~d~~~~~~l~~~~-~iPI--dE~~ 247 (391)
T 3gd6_A 192 YDFSHLLN----WKDAHRA-IKRLTKYDLGLEMIE----S------------PAPRNDFDGLYQLRLKT-DYPI--SEHV 247 (391)
T ss_dssp EECTTCSC----HHHHHHH-HHHHTTCCSSCCEEE----C------------CSCTTCHHHHHHHHHHC-SSCE--EEEC
T ss_pred ecCCCCcC----HHHHHHH-HHHHHhcCCCcceec----C------------CCChhhHHHHHHHHHHc-CCCc--CCCC
Confidence 88777775 3344443 456678898 7776 1 11222477777887765 8999 8899
Q ss_pred CCHHHHHHHHH-cCcCeeEEchHHhhCCc
Q 017176 217 NTVDEVNAALR-KGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 217 ~s~~da~~~l~-~Gad~VmiGRa~l~~P~ 244 (376)
.+.+++.++++ ..+|.|++--+-.+-..
T Consensus 248 ~~~~~~~~~~~~~~~d~v~~k~~~~GGit 276 (391)
T 3gd6_A 248 WSFKQQQEMIKKDAIDIFNISPVFIGGLT 276 (391)
T ss_dssp CCHHHHHHHHHHTCCSEEEECHHHHTSHH
T ss_pred CCHHHHHHHHHcCCCCEEEECchhcCCHH
Confidence 99999999998 66999999776665544
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00014 Score=71.28 Aligned_cols=103 Identities=14% Similarity=0.202 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHH
Q 017176 118 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 197 (376)
Q Consensus 118 ~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~ 197 (376)
+++.+.++++.+++. +.++.++++.. ...+.+ +.++++|+|.+.+|+..... .... +...|..
T Consensus 140 d~~~~~~~i~~~~~~-g~~v~~~v~~~-----~~~e~a----~~~~~agad~i~i~~~~~~~-~~~~------~~~~~~~ 202 (393)
T 2qr6_A 140 DTELLSERIAQVRDS-GEIVAVRVSPQ-----NVREIA----PIVIKAGADLLVIQGTLISA-EHVN------TGGEALN 202 (393)
T ss_dssp CHHHHHHHHHHHHHT-TSCCEEEECTT-----THHHHH----HHHHHTTCSEEEEECSSCCS-SCCC------C-----C
T ss_pred CHHHHHHHHHHHhhc-CCeEEEEeCCc-----cHHHHH----HHHHHCCCCEEEEeCCcccc-ccCC------CcccHHH
Confidence 788889999998876 88999988752 122322 23446899999999754211 1111 1113555
Q ss_pred HHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHH
Q 017176 198 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 198 v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~ 239 (376)
+.++++.. ++|||+ |+|.|++++..+++.|||+|++|+|.
T Consensus 203 i~~l~~~~-~~pvi~-ggi~t~e~a~~~~~~Gad~i~vg~Gg 242 (393)
T 2qr6_A 203 LKEFIGSL-DVPVIA-GGVNDYTTALHMMRTGAVGIIVGGGE 242 (393)
T ss_dssp HHHHHHHC-SSCEEE-ECCCSHHHHHHHHTTTCSEEEESCCS
T ss_pred HHHHHHhc-CCCEEE-CCcCCHHHHHHHHHcCCCEEEECCCc
Confidence 66777765 899999 99999999999999999999998843
|
| >3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00047 Score=66.91 Aligned_cols=131 Identities=6% Similarity=0.089 Sum_probs=96.4
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecC
Q 017176 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRI 143 (376)
Q Consensus 66 p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~ 143 (376)
|....+...+++.+.+.++.+.+.||..+-+..|+ +++.-.+.+++||+.+ ++++.|...-
T Consensus 131 ~~~~~~~~~~~e~~~~~a~~~~~~G~~~~K~KvG~-----------------~~~~d~~~v~avR~~~g~~~~l~vDaN~ 193 (368)
T 3q45_A 131 QTDYTVSIDEPHKMAADAVQIKKNGFEIIKVKVGG-----------------SKELDVERIRMIREAAGDSITLRIDANQ 193 (368)
T ss_dssp EBCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCS-----------------CHHHHHHHHHHHHHHHCSSSEEEEECTT
T ss_pred eeEEEecCCCHHHHHHHHHHHHHcCCCeEEEEecC-----------------CHHHHHHHHHHHHHHhCCCCeEEEECCC
Confidence 34455666789999999988888999999987653 2455678888998876 5778888777
Q ss_pred CCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHH
Q 017176 144 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 223 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~ 223 (376)
+|+. ++.+++ .+.+++.|+++|. .+ +++.+++..+++.+.. ++||.+.+.+.+++++.
T Consensus 194 ~~~~----~~A~~~-~~~l~~~~i~~iE----qP------------~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~ 251 (368)
T 3q45_A 194 GWSV----ETAIET-LTLLEPYNIQHCE----EP------------VSRNLYTALPKIRQAC-RIPIMADESCCNSFDAE 251 (368)
T ss_dssp CBCH----HHHHHH-HHHHGGGCCSCEE----CC------------BCGGGGGGHHHHHHTC-SSCEEESTTCCSHHHHH
T ss_pred CCCh----HHHHHH-HHHHhhcCCCEEE----CC------------CChhHHHHHHHHHhhC-CCCEEEcCCcCCHHHHH
Confidence 7753 344444 4456778998875 11 1222345556666654 89999999999999999
Q ss_pred HHHH-cCcCeeEE
Q 017176 224 AALR-KGAHHVMV 235 (376)
Q Consensus 224 ~~l~-~Gad~Vmi 235 (376)
++++ ..+|.|++
T Consensus 252 ~~~~~~~~d~v~~ 264 (368)
T 3q45_A 252 RLIQIQACDSFNL 264 (368)
T ss_dssp HHHHTTCCSEEEE
T ss_pred HHHHcCCCCeEEe
Confidence 9998 67999987
|
| >3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00071 Score=65.84 Aligned_cols=133 Identities=7% Similarity=0.091 Sum_probs=96.3
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecC
Q 017176 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRI 143 (376)
Q Consensus 66 p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~ 143 (376)
|+...+...+++.+.+.++...+.||..+-+..|+. +++.-.+.+++||+.+ ++++.|...-
T Consensus 137 ~~~~t~~~~~~~~~~~~a~~~~~~G~~~~K~Kvg~~----------------~~~~d~~~v~avR~~~g~~~~l~vDan~ 200 (377)
T 3my9_A 137 PLSFSIADPDFDADLERMRAMVPAGHTVFKMKTGVK----------------PHAEELRILETMRGEFGERIDLRLDFNQ 200 (377)
T ss_dssp EBCEEECCSSHHHHHHHHHHHTTTTCCEEEEECSSS----------------CHHHHHHHHHHHHHHHGGGSEEEEECTT
T ss_pred EEEEecCCCCHHHHHHHHHHHHHcCCCEEEEccCCC----------------cHHHHHHHHHHHHHHhCCCCeEEEeCCC
Confidence 333444456788888777777777999999876531 3455677888888876 5789999888
Q ss_pred CCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHH
Q 017176 144 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 223 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~ 223 (376)
+|+.. +..++ .+.+++.|+++|. . .+++.+++..+++.+.. ++||.+.+.+.+.+++.
T Consensus 201 ~~~~~-~A~~~----~~~l~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~ 258 (377)
T 3my9_A 201 ALTPF-GAMKI----LRDVDAFRPTFIE----Q------------PVPRRHLDAMAGFAAAL-DTPILADESCFDAVDLM 258 (377)
T ss_dssp CCCTT-THHHH----HHHHHTTCCSCEE----C------------CSCTTCHHHHHHHHHHC-SSCEEESTTCSSHHHHH
T ss_pred CcCHH-HHHHH----HHHHhhcCCCEEE----C------------CCCccCHHHHHHHHHhC-CCCEEECCccCCHHHHH
Confidence 88753 22222 3455678998875 0 11223477777887765 89999999999999999
Q ss_pred HHHH-cCcCeeEEc
Q 017176 224 AALR-KGAHHVMVG 236 (376)
Q Consensus 224 ~~l~-~Gad~VmiG 236 (376)
++++ ..+|.|++-
T Consensus 259 ~~i~~~~~d~v~~k 272 (377)
T 3my9_A 259 EVVRRQAADAISVK 272 (377)
T ss_dssp HHHHHTCCSEEECC
T ss_pred HHHHcCCCCEEEec
Confidence 9998 669998873
|
| >3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00036 Score=69.03 Aligned_cols=146 Identities=13% Similarity=0.183 Sum_probs=102.2
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCcccc------------c--------cCCHHHHHHH
Q 017176 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVS------------L--------MLDPKFVGEA 125 (376)
Q Consensus 66 p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~------------l--------~~~~~~~~ei 125 (376)
|+-.-+.+.+++++++.++.+.+.||..+-+..|.|... ..||.. . ..+.+...++
T Consensus 140 ~~y~~~~~~~~e~~~~~a~~~~~~Gf~~iKlKvG~~~~~----~~~g~~~~~~~~~~~~~~~p~~~~~d~~~~~~~d~e~ 215 (424)
T 3v3w_A 140 LSYTHANGKDLDSTLEAVRKAKDKGYKAIRVQCGIPGIA----KTYGVSTNTKSYEPADADLPSVEVWSTEKYLNYIPDV 215 (424)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEECCTTCS----CCTTCC-----CCSCCBSSCCEEEECHHHHHHHHHHH
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeccCcccc----ccccccccccccccccccccccccccchhHHHHHHHH
Confidence 343345567899999999988889999999998875311 011110 0 0125677889
Q ss_pred HHHHhccc--CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHh
Q 017176 126 MSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLR 203 (376)
Q Consensus 126 v~~v~~~~--~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~ 203 (376)
+++||+.+ ++++.|...-+|+. ++.+++ ++.+++.|+++|.- . +++.+++..+++++
T Consensus 216 v~avR~avG~d~~l~vDaN~~~~~----~~A~~~-~~~L~~~~i~~iEq----P------------~~~~d~~~~~~l~~ 274 (424)
T 3v3w_A 216 FAAVRKEFGPDIHLLHDVHHRLTP----IEAARL-GKALEPYHLFWMED----A------------VPAENQESFKLIRQ 274 (424)
T ss_dssp HHHHHHHHCSSSEEEEECTTCCCH----HHHHHH-HHHHGGGCCSEEEC----C------------SCCSSTTHHHHHHH
T ss_pred HHHHHHHcCCCCcEEEeCCCCCCH----HHHHHH-HHHHHhcCCCEEEC----C------------CChHhHHHHHHHHh
Confidence 99999987 57888887777753 344444 44567889998861 1 11223555667776
Q ss_pred hCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEch
Q 017176 204 DFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGR 237 (376)
Q Consensus 204 ~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGR 237 (376)
.. ++||++.+.+.+++++.++++ ..+|.|++--
T Consensus 275 ~~-~iPIa~dE~~~~~~~~~~~i~~ga~d~v~~k~ 308 (424)
T 3v3w_A 275 HT-TTPLAVGEVFNSIHDCRELIQNQWIDYIRTTI 308 (424)
T ss_dssp HC-CSCEEECTTCCSGGGTHHHHHTTCCSEECCCT
T ss_pred hC-CCCEEEccCcCCHHHHHHHHHcCCCCeEeecc
Confidence 64 899999999999999999999 5589988743
|
| >3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0007 Score=66.23 Aligned_cols=132 Identities=17% Similarity=0.144 Sum_probs=97.0
Q ss_pred CEEEEecC---CCHHHHHHHHHHHHHC---CCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccE
Q 017176 66 PIVLQIGG---SNLDNLAKATELANAY---NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPV 137 (376)
Q Consensus 66 p~~vQL~g---~~~~~~~~aa~~~~~~---G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv 137 (376)
|+-..+.+ .+++.+++.++...+. ||..+-+..|.+ +++.-.+.+++||+.+ ++++
T Consensus 159 ~~y~s~g~~~~~~~e~~~~~a~~~~~~~~~G~~~iKlKvG~~----------------~~~~d~~~v~avR~a~G~~~~l 222 (390)
T 3ugv_A 159 KAYNSNGLWLKSPAEVAAEAVELKAEGQGTGFKGLKLRMGRD----------------DPAVDIETAEAVWDAVGRDTAL 222 (390)
T ss_dssp EEEECSCCCSSCHHHHHHHHHHHHHTTCTTCCSEEEEECCCS----------------SHHHHHHHHHHHHHHHCTTSEE
T ss_pred EEEEecccccCCCHHHHHHHHHHHHHhhhCCCcEEEEecCCC----------------CHHHHHHHHHHHHHHhCCCCEE
Confidence 44444444 5789999988888888 999999876542 3556678888898876 5788
Q ss_pred EEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCC
Q 017176 138 SVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 217 (376)
Q Consensus 138 ~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~ 217 (376)
.|...-+|+. ++.+++ .+.+++.|+++|. . .+++.+++.++++.+.. ++||.+...+.
T Consensus 223 ~vDaN~~~~~----~~A~~~-~~~l~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~ 280 (390)
T 3ugv_A 223 MVDFNQGLDM----AEAMHR-TRQIDDLGLEWIE----E------------PVVYDNFDGYAQLRHDL-KTPLMIGENFY 280 (390)
T ss_dssp EEECTTCCCH----HHHHHH-HHHHTTSCCSEEE----C------------CSCTTCHHHHHHHHHHC-SSCEEECTTCC
T ss_pred EEECCCCCCH----HHHHHH-HHHHHhhCCCEEE----C------------CCCcccHHHHHHHHHhc-CCCEEeCCCcC
Confidence 8888877763 344444 4456788998875 1 11223467777877765 89999999999
Q ss_pred CHHHHHHHHH-cCcCeeEE
Q 017176 218 TVDEVNAALR-KGAHHVMV 235 (376)
Q Consensus 218 s~~da~~~l~-~Gad~Vmi 235 (376)
+.+++.++++ ..+|.|++
T Consensus 281 ~~~~~~~~i~~~a~d~v~i 299 (390)
T 3ugv_A 281 GPREMHQALQAGACDLVMP 299 (390)
T ss_dssp SHHHHHHHHHTTCCSEECC
T ss_pred CHHHHHHHHHcCCCCEEEe
Confidence 9999999998 56898876
|
| >1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00063 Score=66.02 Aligned_cols=122 Identities=9% Similarity=0.067 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHHH
Q 017176 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQ 153 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 153 (376)
++.+.++++.+++.||..+.+..|+. +++.-.+.+++||+.+ +.++.+...-+|+.. +
T Consensus 144 ~~~~~~~~~~~~~~G~~~~KiKvg~~----------------~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~----~ 203 (370)
T 1chr_A 144 KRDLDSAVEMIERRRHNRFKVKLGFR----------------SPQDDLIHMEALSNSLGSKAYLRVDVNQAWDEQ----V 203 (370)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEECSSS----------------CSHHHHHHHHHHHHHSSTTCCEEEECTTCCCTT----H
T ss_pred HHHHHHHHHHHHHCCCCEEEEecCCC----------------CHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHH----H
Confidence 45566676777768999999876542 3455677889999887 478999999888753 2
Q ss_pred HHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCe
Q 017176 154 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHH 232 (376)
Q Consensus 154 ~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~ 232 (376)
.+++ .+.+++.|+++|. . .+++.+++.++++.+.. ++||.+.+.+.+.+++.++++ ..+|.
T Consensus 204 a~~~-~~~l~~~~i~~iE----q------------P~~~~~~~~~~~l~~~~-~iPia~dE~~~~~~~~~~~~~~~~~d~ 265 (370)
T 1chr_A 204 ASVY-IPELEALGVELIE----Q------------PVGRENTQALRRLSDNN-RVAIMADESLSTLASAFDLARDRSVDV 265 (370)
T ss_dssp HHHH-THHHHTTTEEEEE----C------------CSCTTCHHHHHHHHHHS-CSEEEESSSCCSHHHHHHHHTTTSCSE
T ss_pred HHHH-HHHHHhcCCCEEE----C------------CCCcccHHHHHHHHhhC-CCCEEeCCCcCCHHHHHHHHHcCCCCE
Confidence 3332 3456678998875 1 11223467777777765 899999999999999999998 56999
Q ss_pred eEE
Q 017176 233 VMV 235 (376)
Q Consensus 233 Vmi 235 (376)
|++
T Consensus 266 v~~ 268 (370)
T 1chr_A 266 FSL 268 (370)
T ss_dssp EEE
T ss_pred EEE
Confidence 988
|
| >3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.001 Score=64.94 Aligned_cols=132 Identities=9% Similarity=0.017 Sum_probs=97.0
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHC-CCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEec
Q 017176 66 PIVLQIGGSNLDNLAKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCR 142 (376)
Q Consensus 66 p~~vQL~g~~~~~~~~aa~~~~~~-G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR 142 (376)
|+-..+...+++.+++.++.+.+. ||..+-+..|++ +++.-.+.+++||+.+ ++++.+...
T Consensus 158 ~~y~s~g~~~~e~~~~~a~~~~~~~G~~~~KlKvG~~----------------~~~~d~~~v~avR~a~G~~~~l~vDaN 221 (383)
T 3toy_A 158 PAYDSYGVLDARDDERTLRTACDEHGFRAIKSKGGHG----------------DLATDEAMIKGLRALLGPDIALMLDFN 221 (383)
T ss_dssp EEEEECSSCCHHHHHHHHHHHHHTSCCCEEEEECCSS----------------CHHHHHHHHHHHHHHHCTTSEEEEECT
T ss_pred EEeEecCCCCHHHHHHHHHHHHHccCCcEEEEecCCC----------------CHHHHHHHHHHHHHHhCCCCeEEEeCC
Confidence 444444446899999999888888 999999876542 3556678888898876 578888888
Q ss_pred CCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHH
Q 017176 143 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 222 (376)
Q Consensus 143 ~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da 222 (376)
-+|+. ++.+++ .+.+++.|+++|. . .+++.+++..+++.+.. ++||.+...+.+.+++
T Consensus 222 ~~~~~----~~A~~~-~~~l~~~~i~~iE----e------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~ 279 (383)
T 3toy_A 222 QSLDP----AEATRR-IARLADYDLTWIE----E------------PVPQENLSGHAAVRERS-EIPIQAGENWWFPRGF 279 (383)
T ss_dssp TCSCH----HHHHHH-HHHHGGGCCSEEE----C------------CSCTTCHHHHHHHHHHC-SSCEEECTTCCHHHHH
T ss_pred CCCCH----HHHHHH-HHHHHhhCCCEEE----C------------CCCcchHHHHHHHHhhc-CCCEEeCCCcCCHHHH
Confidence 77763 344444 4456778998875 1 11223467777877765 8999999999999999
Q ss_pred HHHHH-cCcCeeEE
Q 017176 223 NAALR-KGAHHVMV 235 (376)
Q Consensus 223 ~~~l~-~Gad~Vmi 235 (376)
.++++ ..+|.|++
T Consensus 280 ~~~i~~~a~d~v~i 293 (383)
T 3toy_A 280 AEAIAAGASDFIMP 293 (383)
T ss_dssp HHHHHHTCCSEECC
T ss_pred HHHHHcCCCCEEEe
Confidence 99998 56898875
|
| >3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00085 Score=65.02 Aligned_cols=132 Identities=9% Similarity=0.073 Sum_probs=95.4
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHC-CCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEec
Q 017176 66 PIVLQIGGSNLDNLAKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCR 142 (376)
Q Consensus 66 p~~vQL~g~~~~~~~~aa~~~~~~-G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR 142 (376)
|+...+...+++.+.+.++.+.+. ||..+-+..|... .+.-.+++++||+.+ +.++.+...
T Consensus 130 ~~~~~~~~~~~~~~~~~a~~~~~~~G~~~~K~K~g~~~----------------~~~d~~~v~avR~a~g~~~~l~vDan 193 (367)
T 3dg3_A 130 RVSHMLGFDDPVKMVAEAERIRETYGINTFKVKVGRRP----------------VQLDTAVVRALRERFGDAIELYVDGN 193 (367)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHCCCEEEEECCCSS----------------THHHHHHHHHHHHHHGGGSEEEEECT
T ss_pred EEEEEecCCCHHHHHHHHHHHHHhcCccEEEEeeCCCh----------------hhhHHHHHHHHHHHhCCCCEEEEECC
Confidence 444556667899999888887777 9999999765411 013456788888876 568888877
Q ss_pred CCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHH
Q 017176 143 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 222 (376)
Q Consensus 143 ~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da 222 (376)
-+|+. ++.+++ .+.+++.|+++|. . .+++.+++..+++++.. ++||++.+.+.+.+++
T Consensus 194 ~~~~~----~~a~~~-~~~l~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~ 251 (367)
T 3dg3_A 194 RGWSA----AESLRA-MREMADLDLLFAE----E------------LCPADDVLSRRRLVGQL-DMPFIADESVPTPADV 251 (367)
T ss_dssp TCSCH----HHHHHH-HHHTTTSCCSCEE----S------------CSCTTSHHHHHHHHHHC-SSCEEECTTCSSHHHH
T ss_pred CCCCH----HHHHHH-HHHHHHhCCCEEE----C------------CCCcccHHHHHHHHHhC-CCCEEecCCcCCHHHH
Confidence 77753 344443 4566788988876 1 11222366677777765 8999999999999999
Q ss_pred HHHHH-cCcCeeEE
Q 017176 223 NAALR-KGAHHVMV 235 (376)
Q Consensus 223 ~~~l~-~Gad~Vmi 235 (376)
.++++ ..+|.|++
T Consensus 252 ~~~i~~~~~d~v~~ 265 (367)
T 3dg3_A 252 TREVLGGSATAISI 265 (367)
T ss_dssp HHHHHHTSCSEEEE
T ss_pred HHHHHcCCCCEEEe
Confidence 99998 56899987
|
| >3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4gme_A* 4fi4_A 3thu_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00036 Score=69.06 Aligned_cols=146 Identities=10% Similarity=0.046 Sum_probs=100.1
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCcccc-----cc---------------CCHHHHHHH
Q 017176 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVS-----LM---------------LDPKFVGEA 125 (376)
Q Consensus 66 p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~-----l~---------------~~~~~~~ei 125 (376)
|+-.-+.+.+++++++.++.+.+.||..+-+..|.|... ..||.. .. ...+...++
T Consensus 141 ~~y~~~~~~~~e~~~~~a~~~~~~Gf~~iKlKvg~~~~~----~~~g~~~~~~~~~~~~~~~p~~~~~d~~~~~~~d~e~ 216 (425)
T 3vcn_A 141 TVYGHANGETIEDTIAEAVKYKAMGYKAIRLQTGVPGLA----STYGVSKDKMFYEPADNDLPTENIWSTAKYLNSVPKL 216 (425)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEECCTTCS----CCTTCSSCSSCCCCCCBSSCCEEEECHHHHHTTTHHH
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeecCcccc----ccccccccccccCcccccccccccccchhHHHHHHHH
Confidence 343345567899999999988889999999998874310 011110 00 013456778
Q ss_pred HHHHhccc--CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHh
Q 017176 126 MSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLR 203 (376)
Q Consensus 126 v~~v~~~~--~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~ 203 (376)
+++||+.+ ++++.|...-+|+ .++.+++ ++.+++.|+++|.- . +++.+++..+++++
T Consensus 217 v~avR~a~G~d~~l~vDaN~~~~----~~~A~~~-~~~L~~~~i~~iEq----P------------~~~~d~~~~~~l~~ 275 (425)
T 3vcn_A 217 FERAREVLGWDVHLLHDVHHRLT----PIEAARL-GKDLEPYRLFWLED----S------------VPAENQAGFRLIRQ 275 (425)
T ss_dssp HHHHHHHHCSSSEEEEECTTCCC----HHHHHHH-HHHHGGGCCSEEEC----C------------SCCSSTTHHHHHHH
T ss_pred HHHHHHHcCCCCEEEEECCCCCC----HHHHHHH-HHHHHhcCCCEEEC----C------------CChhhHHHHHHHHh
Confidence 88888886 5788888777775 3344443 45567889998861 1 11223555667776
Q ss_pred hCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEch
Q 017176 204 DFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGR 237 (376)
Q Consensus 204 ~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGR 237 (376)
.. ++||++.+.+.+++++.++++ ..+|.|++--
T Consensus 276 ~~-~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~ 309 (425)
T 3vcn_A 276 HT-TTPLAVGEIFAHVWDAKQLIEEQLIDYLRATV 309 (425)
T ss_dssp HC-CSCEEECTTCCSGGGTHHHHHTTCCSEECCCT
T ss_pred cC-CCCEEeCCCcCCHHHHHHHHHcCCCCeEecCh
Confidence 64 899999999999999999999 5589988743
|
| >3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0014 Score=61.59 Aligned_cols=149 Identities=15% Similarity=0.182 Sum_probs=85.7
Q ss_pred CCCEEEEecCCCH-------HHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCcc
Q 017176 64 QHPIVLQIGGSNL-------DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 136 (376)
Q Consensus 64 ~~p~~vQL~g~~~-------~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~p 136 (376)
+.|+++.|.+++. +.+...++.+.+.|+|+|.++. + .+.+.+. ...+.+.+++++..+ .++|
T Consensus 105 ~~~lil~l~~~t~~~~~~~~~~l~~~ve~Av~~GAdaV~~~i-----~-~Gs~~~~----~~l~~i~~v~~~a~~-~Glp 173 (295)
T 3glc_A 105 NRPVVLRASGANSILAELSNEAVALSMDDAVRLNSCAVAAQV-----Y-IGSEYEH----QSIKNIIQLVDAGMK-VGMP 173 (295)
T ss_dssp CCCEEEECEECCCTTSCTTCCEECSCHHHHHHTTCSEEEEEE-----C-TTSTTHH----HHHHHHHHHHHHHHT-TTCC
T ss_pred CccEEEEEcCCCcCCCCCccchhHHHHHHHHHCCCCEEEEEE-----E-CCCCcHH----HHHHHHHHHHHHHHH-cCCE
Confidence 5678888875431 1122245556688999998853 1 1111111 111234445555433 3688
Q ss_pred EEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCC
Q 017176 137 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 216 (376)
Q Consensus 137 v~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI 216 (376)
+.+=...|.....+ .+.+...+++..+.|+|+|-+.- .+ +.+.++++.. .+||++.||+
T Consensus 174 vIie~~~G~~~~~d-~e~i~~aariA~elGAD~VKt~~-----t~--------------e~~~~vv~~~-~vPVv~~GG~ 232 (295)
T 3glc_A 174 TMAVTGVGKDMVRD-QRYFSLATRIAAEMGAQIIKTYY-----VE--------------KGFERIVAGC-PVPIVIAGGK 232 (295)
T ss_dssp EEEEECC----CCS-HHHHHHHHHHHHHTTCSEEEEEC-----CT--------------TTHHHHHHTC-SSCEEEECCS
T ss_pred EEEECCCCCccCCC-HHHHHHHHHHHHHhCCCEEEeCC-----CH--------------HHHHHHHHhC-CCcEEEEECC
Confidence 87744333211111 23333345667789999988751 11 0124455443 7999999999
Q ss_pred C-CHHH----HHHHHHcCcCeeEEchHHhhCCc
Q 017176 217 N-TVDE----VNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 217 ~-s~~d----a~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
. +.++ +.++++.||+||.+||.++..|.
T Consensus 233 ~~~~~~~l~~v~~ai~aGA~Gv~vGRnI~q~~d 265 (295)
T 3glc_A 233 KLPEREALEMCWQAIDQGASGVDMGRNIFQSDH 265 (295)
T ss_dssp CCCHHHHHHHHHHHHHTTCSEEEESHHHHTSSS
T ss_pred CCCHHHHHHHHHHHHHhCCeEEEeHHHHhcCcC
Confidence 8 4444 44555689999999999997654
|
| >3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0017 Score=64.52 Aligned_cols=152 Identities=9% Similarity=0.059 Sum_probs=102.8
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCcc-----------ccCCCC------------ccccc--cCCHH
Q 017176 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPK-----------VAGHGC------------FGVSL--MLDPK 120 (376)
Q Consensus 66 p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~-----------v~r~g~------------yG~~l--~~~~~ 120 (376)
|+-.-+.+.+++++++.++.+.+.||..+-+..|..... +. .+. -|..+ ....+
T Consensus 146 ~~y~~~~~~~~e~~~~~a~~~~~~Gf~~~K~KvG~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (440)
T 3t6c_A 146 ALYVHTDGADEVEVEDSARAKMEEGYQYIRCQMGMYGGAGTDDLRLIANRMV-KAKNIQPKRSPRTKAPGIYFDPEAYAK 224 (440)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHTTCSEEEECSSSSTTCCBCCHHHHSSCBC-CCSSCCCCCCCSSCCSSEECCHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeeccCCccccccccccccccc-cccccccccccccccccccccchhhHH
Confidence 444445677899999999988889999999988743200 00 000 01000 01146
Q ss_pred HHHHHHHHHhccc--CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHH
Q 017176 121 FVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY 198 (376)
Q Consensus 121 ~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v 198 (376)
...+++++||+.+ ++++.|...-+|+. ++.+++ .+.+++.|+++|. . .+++.+++.+
T Consensus 225 ~d~~~v~avR~a~G~d~~L~vDaN~~~~~----~~A~~~-~~~L~~~~i~~iE----e------------P~~~~d~~~~ 283 (440)
T 3t6c_A 225 SIPRLFDHLRNKLGFSVELLHDAHERITP----INAIHM-AKALEPYQLFFLE----D------------PVAPENTEWL 283 (440)
T ss_dssp HHHHHHHHHHHHHCSSSEEEEECTTCSCH----HHHHHH-HHHTGGGCCSEEE----C------------SSCGGGGGGH
T ss_pred HHHHHHHHHHHhcCCCCeEEEECCCCCCH----HHHHHH-HHHhhhcCCCEEE----C------------CCChhhHHHH
Confidence 6788899999987 57899988888863 344443 4556788998886 1 1122235556
Q ss_pred HHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHh
Q 017176 199 YALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAY 240 (376)
Q Consensus 199 ~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l 240 (376)
+++.+.. ++||.+...+.+.+++.++++ ..+|.|++--+-.
T Consensus 284 ~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~ 325 (440)
T 3t6c_A 284 KMLRQQS-STPIAMGELFVNVNEWKPLIDNKLIDYIRCHISSI 325 (440)
T ss_dssp HHHHHHC-CSCEEECTTCCSHHHHHHHHHTTCCSEECCCGGGG
T ss_pred HHHHhhc-CCCEEeCcccCCHHHHHHHHHcCCccceeechhhh
Confidence 6776664 899999999999999999998 5689988744433
|
| >1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00033 Score=68.11 Aligned_cols=120 Identities=8% Similarity=0.053 Sum_probs=87.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHH
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~ 152 (376)
.+++++.+.++++.+.||+.+.++.+ | +...+++++||+.+ ++++.+...-+|+..
T Consensus 147 ~~~~~~~~~a~~~~~~G~~~iKik~~-~------------------~~d~~~v~avr~a~~~~~l~vDan~~~~~~---- 203 (375)
T 1r0m_A 147 ADEQATVDLVRRHVEQGYRRIKLKIK-P------------------GWDVQPVRATREAFPDIRLTVDANSAYTLA---- 203 (375)
T ss_dssp SSHHHHHHHHHHHHHTTCSCEEEECB-T------------------TBSHHHHHHHHHHCTTSCEEEECTTCCCGG----
T ss_pred CCHHHHHHHHHHHHHhcccEEEEecC-h------------------HHHHHHHHHHHHHcCCCeEEEeCCCCCCHH----
Confidence 48999999999998999999999752 1 12235566666655 677888887778643
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcC
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAH 231 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad 231 (376)
+ +++ .+.+++.|+++|. . .+++.+++..+++.+.. ++||.+.+.+.+++++.++++ ..+|
T Consensus 204 ~-~~~-~~~l~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~i~~~~~d 264 (375)
T 1r0m_A 204 D-AGR-LRQLDEYDLTYIE----Q------------PLAWDDLVDHAELARRI-RTPLCLDESVASASDARKALALGAGG 264 (375)
T ss_dssp G-HHH-HHTTGGGCCSCEE----C------------CSCTTCSHHHHHHHHHC-SSCEEESTTCCSHHHHHHHHHHTSCS
T ss_pred H-HHH-HHHHHhCCCcEEE----C------------CCCcccHHHHHHHHHhC-CCCEEecCccCCHHHHHHHHHhCCCC
Confidence 3 333 3346778998876 1 11222366667777665 899999999999999999998 5699
Q ss_pred eeEE
Q 017176 232 HVMV 235 (376)
Q Consensus 232 ~Vmi 235 (376)
.|++
T Consensus 265 ~v~i 268 (375)
T 1r0m_A 265 VINL 268 (375)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9998
|
| >3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00074 Score=66.49 Aligned_cols=137 Identities=9% Similarity=0.063 Sum_probs=96.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCc--cc------cccC---CHHHHHHHHHHHhccc--CccEEEE
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCF--GV------SLML---DPKFVGEAMSVIAANT--NVPVSVK 140 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~y--G~------~l~~---~~~~~~eiv~~v~~~~--~~pv~vK 140 (376)
.+++++++.++.+.+.||..+-+..+.+..... ..| |. .... ..++..+++++||+.+ ++++.|.
T Consensus 142 ~~~e~~~~~a~~~~~~Gf~~iKlKv~~~~~~~~--~~~~pG~~~~~~~~~~~~~~~~~~~~e~v~avR~avG~d~~l~vD 219 (409)
T 3go2_A 142 TDLDGVKRTAEEARERQFRAIKTNIFIHDDGPL--HAWRPGFAVPFQPALNVDRKVLRNLRAHLEALRDGAGPDVEILLD 219 (409)
T ss_dssp CSHHHHHHHHHHHHHTTCCEEEECCEECSSSSC--EECBGGGTBSCCTTCCCCHHHHHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcccccccccc--cccccCCCccCCcccccchHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 368999999998888999999998733221100 001 11 0111 2467788999999986 5788888
Q ss_pred ecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHH
Q 017176 141 CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVD 220 (376)
Q Consensus 141 iR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~ 220 (376)
..-+|+ .++.+++ .+.+++.|+++|.... .+++..+++++.. ++||++.+.+.+++
T Consensus 220 aN~~~~----~~~A~~~-~~~L~~~~i~~iE~P~------------------~d~~~~~~l~~~~-~iPIa~dE~~~~~~ 275 (409)
T 3go2_A 220 LNFNAK----PEGYLKI-LRELADFDLFWVEIDS------------------YSPQGLAYVRNHS-PHPISSCETLFGIR 275 (409)
T ss_dssp CTTCSC----HHHHHHH-HHHTTTSCCSEEECCC------------------SCHHHHHHHHHTC-SSCEEECTTCCHHH
T ss_pred CCCCCC----HHHHHHH-HHHHhhcCCeEEEeCc------------------CCHHHHHHHHhhC-CCCEEeCCCcCCHH
Confidence 777775 3344544 4566789999988321 1266677777664 89999999999999
Q ss_pred HHHHHHH-cCcCeeEEc
Q 017176 221 EVNAALR-KGAHHVMVG 236 (376)
Q Consensus 221 da~~~l~-~Gad~VmiG 236 (376)
++.++++ ..+|.|++=
T Consensus 276 ~~~~~i~~~~~d~v~~k 292 (409)
T 3go2_A 276 EFKPFFDANAVDVAIVD 292 (409)
T ss_dssp HHHHHHHTTCCSEEEEC
T ss_pred HHHHHHHhCCCCEEEeC
Confidence 9999998 568999873
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00061 Score=61.82 Aligned_cols=153 Identities=13% Similarity=0.156 Sum_probs=94.2
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCE--EEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCC
Q 017176 67 IVLQIGGSNLDNLAKATELANAYNYDE--INLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG 144 (376)
Q Consensus 67 ~~vQL~g~~~~~~~~aa~~~~~~G~d~--IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g 144 (376)
+..+|...|...+.++.+.+ +.|+|. +|+--|.-+++. .|| ..+++++|+.++.|+.+-+-.
T Consensus 3 i~pSila~D~~~l~~~i~~~-~~gad~lHvDvmDG~fvpn~----t~G----------~~~v~~lr~~~~~~~dvhLmv- 66 (231)
T 3ctl_A 3 ISPSLMCMDLLKFKEQIEFI-DSHADYFHIDIMDGHFVPNL----TLS----------PFFVSQVKKLATKPLDCHLMV- 66 (231)
T ss_dssp EEEBGGGSCGGGHHHHHHHH-HTTCSCEEEEEECSSSSSCC----CBC----------HHHHHHHHTTCCSCEEEEEES-
T ss_pred EEeehhhCChhhHHHHHHHH-HcCCCEEEEEEEeCccCccc----hhc----------HHHHHHHHhccCCcEEEEEEe-
Confidence 55677778888889999999 889997 566556533321 245 257888888777787776654
Q ss_pred CCCCccHHHHHHHHHHHhhcCCccEEEEccCc-cc----------cCCC------CCC----------------------
Q 017176 145 VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK-AL----------LNGI------SPA---------------------- 185 (376)
Q Consensus 145 ~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~-~~----------~~g~------~~~---------------------- 185 (376)
.+.+.+.+ .+.++|+|.|++|.-. .. ..|. .+.
T Consensus 67 -~dp~~~i~-------~~~~aGAd~itvh~Ea~~~~~~~~i~~i~~~G~k~gv~lnp~tp~~~~~~~l~~~D~VlvmsV~ 138 (231)
T 3ctl_A 67 -TRPQDYIA-------QLARAGADFITLHPETINGQAFRLIDEIRRHDMKVGLILNPETPVEAMKYYIHKADKITVMTVD 138 (231)
T ss_dssp -SCGGGTHH-------HHHHHTCSEEEECGGGCTTTHHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGGCSEEEEESSC
T ss_pred -cCHHHHHH-------HHHHcCCCEEEECcccCCccHHHHHHHHHHcCCeEEEEEECCCcHHHHHHHHhcCCEEEEeeec
Confidence 22222211 1235788888887543 10 0000 000
Q ss_pred ---CCCCCCcccHHHHHHHHhhC----CCCeEEEecCCCCHHHHHHHHHcCcCeeEEc-hHHhhCCc
Q 017176 186 ---ENRTIPPLKYEYYYALLRDF----PDLTFTLNGGINTVDEVNAALRKGAHHVMVG-RAAYQNPW 244 (376)
Q Consensus 186 ---~~~~~~~~~~~~v~~~~~~~----~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG-Ra~l~~P~ 244 (376)
.+....+..++.++++++.. .+++|.+.|||+ .+.+.++.+.|||.+.+| ++++..+.
T Consensus 139 pGfggQ~f~~~~l~kI~~lr~~~~~~~~~~~I~VdGGI~-~~~~~~~~~aGAd~~V~G~saif~~~d 204 (231)
T 3ctl_A 139 PGFAGQPFIPEMLDKLAELKAWREREGLEYEIEVDGSCN-QATYEKLMAAGADVFIVGTSGLFNHAE 204 (231)
T ss_dssp TTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESCCS-TTTHHHHHHHTCCEEEECTTTTGGGCS
T ss_pred cCcCCccccHHHHHHHHHHHHHHhccCCCceEEEECCcC-HHHHHHHHHcCCCEEEEccHHHhCCCC
Confidence 00011111234444443321 268999999996 788889999999999999 99887554
|
| >1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00086 Score=60.85 Aligned_cols=136 Identities=12% Similarity=0.051 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc---CccEEEEecCCCCCCccH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT---NVPVSVKCRIGVDDHDSY 151 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~---~~pv~vKiR~g~~~~~~~ 151 (376)
..+.-..-++.+.+.|+|.||+.. + +|+-.. .+.+-+.++++.+ +.|+ |+-+-.... +.
T Consensus 86 ~~~~k~~e~~~Av~~GAdEID~vi-----n------ig~~~~----~v~~ei~~v~~a~~~~g~~l--KvIlEt~~L-~~ 147 (234)
T 1n7k_A 86 PLEVKLVEAQTVLEAGATELDVVP-----H------LSLGPE----AVYREVSGIVKLAKSYGAVV--KVILEAPLW-DD 147 (234)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEECC-----C------GGGCHH----HHHHHHHHHHHHHHHTTCEE--EEECCGGGS-CH
T ss_pred cHHHHHHHHHHHHHcCCCEEEEec-----c------chHHHH----HHHHHHHHHHHHHhhcCCeE--EEEEeccCC-CH
Confidence 344455556677778999999964 1 243222 4555555555544 3454 544422111 22
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHH--HHhhCCCCeEEEecCCCCHHHHHHHHHcC
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA--LLRDFPDLTFTLNGGINTVDEVNAALRKG 229 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~--~~~~~~~ipVi~nGgI~s~~da~~~l~~G 229 (376)
++ +....++..++|+|+|-.+.+.....| + ..+.+.. .++.. .+||-++|||++.+++.++++.|
T Consensus 148 e~-i~~a~ria~eaGADfVKTsTG~~~~~g---A--------t~~dv~l~~m~~~v-~v~VKaaGGirt~~~al~~i~aG 214 (234)
T 1n7k_A 148 KT-LSLLVDSSRRAGADIVKTSTGVYTKGG---D--------PVTVFRLASLAKPL-GMGVKASGGIRSGIDAVLAVGAG 214 (234)
T ss_dssp HH-HHHHHHHHHHTTCSEEESCCSSSCCCC---S--------HHHHHHHHHHHGGG-TCEEEEESSCCSHHHHHHHHHTT
T ss_pred HH-HHHHHHHHHHhCCCEEEeCCCCCCCCC---C--------CHHHHHHHHHHHHH-CCCEEEecCCCCHHHHHHHHHcC
Confidence 33 334566777899999986643210011 1 1333333 44433 39999999999999999999999
Q ss_pred cC--eeEEchHHhh
Q 017176 230 AH--HVMVGRAAYQ 241 (376)
Q Consensus 230 ad--~VmiGRa~l~ 241 (376)
|+ |+..|+.++.
T Consensus 215 a~RiG~S~g~~I~~ 228 (234)
T 1n7k_A 215 ADIIGTSSAVKVLE 228 (234)
T ss_dssp CSEEEETTHHHHHH
T ss_pred ccccchHHHHHHHH
Confidence 99 7777777654
|
| >3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural genomics, mandelate racemase/muconatelactonizing hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism} PDB: 2pce_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.003 Score=61.65 Aligned_cols=139 Identities=14% Similarity=0.133 Sum_probs=103.0
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEE
Q 017176 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVK 140 (376)
Q Consensus 63 ~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vK 140 (376)
+.-|+-..+...+++++++.++.+.+.||..+-+..||+.. + .+++.-.+.+++||+.+ ++++.|.
T Consensus 133 ~~v~~y~s~~~~~~e~~~~~a~~~~~~G~~~~K~Kvg~~~~--------~----~~~~~d~~~v~avR~a~G~~~~L~vD 200 (386)
T 3fv9_G 133 GPVPVISSIGGDTPEAMRAKVARHRAQGFKGHSIKIGASEA--------E----GGPALDAERITACLADRQPGEWYLAD 200 (386)
T ss_dssp SCBCEEEEECSCCHHHHHHHHHHHHHTTCCEEEEECCCCTT--------T----THHHHHHHHHHHHTTTCCTTCEEEEE
T ss_pred CceeeeEecCCCCHHHHHHHHHHHHHCCCCEEEEeccCCCC--------C----CCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 34567777778899999999998888999999999998632 1 24677788999999987 5688888
Q ss_pred ecCCCCCCccHHHHHHHHHHHh-hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCH
Q 017176 141 CRIGVDDHDSYNQLCDFIYKVS-SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV 219 (376)
Q Consensus 141 iR~g~~~~~~~~~~~~~i~~~~-e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~ 219 (376)
..-+|+. ++.+++ .+.+ ++.++ +|. . .++ +++..+++.+.. ++||.+...+.+.
T Consensus 201 aN~~~~~----~~A~~~-~~~l~~~~~i-~iE----e------------P~~--~~~~~~~l~~~~-~iPIa~dE~~~~~ 255 (386)
T 3fv9_G 201 ANNGLTV----EHALRM-LSLLPPGLDI-VLE----A------------PCA--SWAETKSLRARC-ALPLLLDELIQTE 255 (386)
T ss_dssp CTTCCCH----HHHHHH-HHHSCSSCCC-EEE----C------------CCS--SHHHHHHHHTTC-CSCEEESTTCCSH
T ss_pred CCCCCCH----HHHHHH-HHHhhccCCc-EEe----c------------CCC--CHHHHHHHHhhC-CCCEEeCCCcCCH
Confidence 8877763 344443 3445 55666 553 0 111 366677777654 8999999999999
Q ss_pred HHHHHHHH-cCcCeeEEchH
Q 017176 220 DEVNAALR-KGAHHVMVGRA 238 (376)
Q Consensus 220 ~da~~~l~-~Gad~VmiGRa 238 (376)
+++.++++ ..+|.|++--+
T Consensus 256 ~~~~~~~~~~a~d~v~~k~~ 275 (386)
T 3fv9_G 256 TDLIAAIRDDLCDGVGLKVS 275 (386)
T ss_dssp HHHHHHHHTTCCSEEEEEHH
T ss_pred HHHHHHHHhCCCCEEEECcc
Confidence 99999998 56999988433
|
| >3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0019 Score=62.95 Aligned_cols=133 Identities=16% Similarity=0.124 Sum_probs=95.2
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCC
Q 017176 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIG 144 (376)
Q Consensus 66 p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g 144 (376)
|+...+...+++.+.+.++.+.+.||..+-+..|+. +++.-.+.+++||+.+ +.++.+...-+
T Consensus 139 ~~~~t~~~~~~~~~~~~a~~~~~~G~~~~K~Kvg~~----------------~~~~d~~~v~avR~a~~~~~l~vDan~~ 202 (385)
T 3i6e_A 139 PLSCSIANPDFDADIALMERLRADGVGLIKLKTGFR----------------DHAFDIMRLELIARDFPEFRVRVDYNQG 202 (385)
T ss_dssp EBEEEECCSSHHHHHHHHHHHHHHTCCEEEEECSSS----------------CHHHHHHHHHHHHHHCTTSEEEEECTTC
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecCCC----------------CHHHHHHHHHHHHHhCCCCeEEEECCCC
Confidence 444555556788887777776667999999876531 3455567788888776 67899998888
Q ss_pred CCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHH
Q 017176 145 VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNA 224 (376)
Q Consensus 145 ~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~ 224 (376)
|+. .+. +++ .+.+++.|+++|. . .+++.+++.++++.+.. ++||.+...+.+.+++.+
T Consensus 203 ~~~-~~A---~~~-~~~L~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~ 260 (385)
T 3i6e_A 203 LEI-DEA---VPR-VLDVAQFQPDFIE----Q------------PVRAHHFELMARLRGLT-DVPLLADESVYGPEDMVR 260 (385)
T ss_dssp CCG-GGH---HHH-HHHHHTTCCSCEE----C------------CSCTTCHHHHHHHHTTC-SSCEEESTTCCSHHHHHH
T ss_pred CCH-HHH---HHH-HHHHHhcCCCEEE----C------------CCCcccHHHHHHHHHhC-CCCEEEeCCcCCHHHHHH
Confidence 875 322 232 3445678988875 1 11223477777777664 899999999999999999
Q ss_pred HHH-cCcCeeEEc
Q 017176 225 ALR-KGAHHVMVG 236 (376)
Q Consensus 225 ~l~-~Gad~VmiG 236 (376)
+++ ..+|.|++-
T Consensus 261 ~~~~~~~d~v~~k 273 (385)
T 3i6e_A 261 AAHEGICDGVSIK 273 (385)
T ss_dssp HHHHTCCSEEEEC
T ss_pred HHHcCCCCEEEec
Confidence 998 669999873
|
| >4e4f_A Mannonate dehydratase; magnesium binding, enzyme function initiative, isomerase; 2.00A {Pectobacterium carotovorum subsp} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00053 Score=67.91 Aligned_cols=148 Identities=10% Similarity=0.105 Sum_probs=96.9
Q ss_pred CCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCcccc---CCCCccc----------------cccCCHHHHHHH
Q 017176 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVA---GHGCFGV----------------SLMLDPKFVGEA 125 (376)
Q Consensus 65 ~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~---r~g~yG~----------------~l~~~~~~~~ei 125 (376)
.|+-....+.+++++.+.++...+.||+.+-+..|.|..... ..+ .+- ......++..++
T Consensus 139 v~~y~~~~~~~~~~~~~~~~~~~~~Gf~~iKikvG~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 217 (426)
T 4e4f_A 139 VMVYCHTTGHSIDEVLDDYAKHRDQGFKAIRVQCGVPGMETTYGMAKG-KGLAYEPATKGSLPEEQLWSTEKYLDFTPKL 217 (426)
T ss_dssp EEEEEEECCSSHHHHHHHHHHHHHTTCSEEEECC--------------------CCSEESSSCCEEEECHHHHHHHHHHH
T ss_pred eeEeEeCCCCCHHHHHHHHHHHHHcCCCEEEEeccCCccccccccccc-cccccccccccccccccccchhHHHHHHHHH
Confidence 345455667788888888877778899999999987642100 000 000 001123567789
Q ss_pred HHHHhccc--CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHh
Q 017176 126 MSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLR 203 (376)
Q Consensus 126 v~~v~~~~--~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~ 203 (376)
+++||+.+ ++++.+...-+|+ .++.+++ ++.+++.|+++|.- + +++.+++.++++++
T Consensus 218 v~avR~a~G~d~~L~vDaN~~~~----~~~A~~~-~~~L~~~~i~~iEe----P------------~~~~d~~~~~~l~~ 276 (426)
T 4e4f_A 218 FEAVRDKFGFNEHLLHDMHHRLT----PIEAARF-GKSVEDYRLFWMED----P------------TPAENQACFRLIRQ 276 (426)
T ss_dssp HHHHHHHHTTSSEEEEECTTCSC----HHHHHHH-HHHTGGGCCSEEEC----C------------SCCSSGGGGHHHHT
T ss_pred HHHHHHHhCCCCEEEEECCCCCC----HHHHHHH-HHHHhhcCCCEEEC----C------------CChHHHHHHHHHHh
Confidence 99999987 5788888877775 3344443 45677899998861 1 11222444566666
Q ss_pred hCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEE
Q 017176 204 DFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV 235 (376)
Q Consensus 204 ~~~~ipVi~nGgI~s~~da~~~l~-~Gad~Vmi 235 (376)
. .++||++.+.+.+++++.++++ ..+|.|++
T Consensus 277 ~-~~iPIa~dE~~~~~~~~~~~i~~ga~d~v~~ 308 (426)
T 4e4f_A 277 H-TVTPIAVGEVFNSIWDCKQLIEEQLIDYIRT 308 (426)
T ss_dssp T-CCSCEEECTTCCSGGGTHHHHHTTCCSEECC
T ss_pred c-CCCCEEeCCCcCCHHHHHHHHHcCCCCEEEe
Confidence 5 4899999999999999999998 56899886
|
| >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0062 Score=54.95 Aligned_cols=51 Identities=16% Similarity=0.345 Sum_probs=42.4
Q ss_pred ccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017176 193 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 193 ~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
..++-++++++...+++|.+.|||. .+.+.++.+.|||.+.+||+++..+.
T Consensus 159 ~~l~ki~~lr~~~~~~~I~VdGGI~-~~ti~~~~~aGAd~~V~GsaIf~~~d 209 (227)
T 1tqx_A 159 DMMGKVSFLRKKYKNLNIQVDGGLN-IETTEISASHGANIIVAGTSIFNAED 209 (227)
T ss_dssp GGHHHHHHHHHHCTTCEEEEESSCC-HHHHHHHHHHTCCEEEESHHHHTCSS
T ss_pred HHHHHHHHHHHhccCCeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHhCCCC
Confidence 3466677776655578999999995 88999999999999999999997665
|
| >2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0005 Score=66.62 Aligned_cols=120 Identities=10% Similarity=0.084 Sum_probs=87.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHH
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~ 152 (376)
.+++++.+.|+.+.+.||+.+.++.+ | +...+.+++||+.+ ++++.+...-+|+..
T Consensus 140 ~~~~~~~~~a~~~~~~G~~~iKik~~-~------------------~~d~~~v~avr~a~~~~~l~vDan~~~~~~---- 196 (369)
T 2zc8_A 140 PSVEDTLRVVERHLEEGYRRIKLKIK-P------------------GWDYEVLKAVREAFPEATLTADANSAYSLA---- 196 (369)
T ss_dssp SSHHHHHHHHHHHHHTTCSCEEEECB-T------------------TBSHHHHHHHHHHCTTSCEEEECTTCCCGG----
T ss_pred CCHHHHHHHHHHHHHhhhheeeeecC-h------------------hHHHHHHHHHHHHcCCCeEEEecCCCCCHH----
Confidence 47999999999998999999999752 1 12235566666655 677888887778643
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcC
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAH 231 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad 231 (376)
+ +++ .+.+++.|+++|. .+ +++.+++..+++.++. ++||.+.+.+.+++++.++++ ..+|
T Consensus 197 ~-~~~-~~~l~~~~i~~iE----qP------------~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~i~~~~~d 257 (369)
T 2zc8_A 197 N-LAQ-LKRLDELRLDYIE----QP------------LAYDDLLDHAKLQREL-STPICLDESLTGAEKARKAIELGAGR 257 (369)
T ss_dssp G-HHH-HHGGGGGCCSCEE----CC------------SCTTCSHHHHHHHHHC-SSCEEESTTCCSHHHHHHHHHHTCCS
T ss_pred H-HHH-HHHHHhCCCcEEE----CC------------CCcccHHHHHHHHhhC-CCCEEEcCccCCHHHHHHHHHhCCCC
Confidence 2 333 3456788998877 11 1222356667777665 899999999999999999998 5589
Q ss_pred eeEE
Q 017176 232 HVMV 235 (376)
Q Consensus 232 ~Vmi 235 (376)
.|++
T Consensus 258 ~v~i 261 (369)
T 2zc8_A 258 VFNV 261 (369)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9987
|
| >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0016 Score=59.71 Aligned_cols=138 Identities=18% Similarity=0.163 Sum_probs=96.5
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017176 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 63 ~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
.+-|+.-+=|.-++-+. .+ +..+|+|+|=|++.+ .+.+.+.++++..++ .+..+.|-+.
T Consensus 100 v~lPvLrKDfi~~~~qi---~e-a~~~GAD~ilLi~a~----------------l~~~~l~~l~~~a~~-lGl~~lvEv~ 158 (251)
T 1i4n_A 100 TCRPILAKDFYIDTVQV---KL-ASSVGADAILIIARI----------------LTAEQIKEIYEAAEE-LGMDSLVEVH 158 (251)
T ss_dssp CCSCEEEECCCCSTHHH---HH-HHHTTCSEEEEEGGG----------------SCHHHHHHHHHHHHT-TTCEEEEEEC
T ss_pred CCCCEEEeeCCCCHHHH---HH-HHHcCCCEEEEeccc----------------CCHHHHHHHHHHHHH-cCCeEEEEeC
Confidence 35688888777665432 23 677999999998642 122567778877765 4666666332
Q ss_pred CCCCCCccHHHHHHHHHHHhhcC-CccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCCCCHH
Q 017176 143 IGVDDHDSYNQLCDFIYKVSSLS-PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVD 220 (376)
Q Consensus 143 ~g~~~~~~~~~~~~~i~~~~e~~-Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI~s~~ 220 (376)
+.+|+.. + .+. |++.|-++.|.- .++. .+++...++.+..+ ++++|+-|||.|++
T Consensus 159 -------~~eE~~~----A-~~l~g~~iIGinnr~l--~t~~---------~d~~~~~~l~~~ip~~~~vIaEsGI~t~e 215 (251)
T 1i4n_A 159 -------SREDLEK----V-FSVIRPKIIGINTRDL--DTFE---------IKKNVLWELLPLVPDDTVVVAESGIKDPR 215 (251)
T ss_dssp -------SHHHHHH----H-HTTCCCSEEEEECBCT--TTCC---------BCTTHHHHHGGGSCTTSEEEEESCCCCGG
T ss_pred -------CHHHHHH----H-HhcCCCCEEEEeCccc--ccCC---------CCHHHHHHHHHhCCCCCEEEEeCCCCCHH
Confidence 3445322 2 358 999999999863 2211 12444456666655 58999999999999
Q ss_pred HHHHHHHcCcCeeEEchHHhhCCch
Q 017176 221 EVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 221 da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
|+.++.+. +|+|.||.+++..++.
T Consensus 216 dv~~~~~~-a~avLVG~aimr~~d~ 239 (251)
T 1i4n_A 216 ELKDLRGK-VNAVLVGTSIMKAENP 239 (251)
T ss_dssp GHHHHTTT-CSEEEECHHHHHCSSH
T ss_pred HHHHHHHh-CCEEEEcHHHcCCcCH
Confidence 99999999 9999999999988875
|
| >1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.002 Score=60.90 Aligned_cols=138 Identities=12% Similarity=0.056 Sum_probs=80.0
Q ss_pred HHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC-C--CCCCccHHHHHHH
Q 017176 81 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI-G--VDDHDSYNQLCDF 157 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~-g--~~~~~~~~~~~~~ 157 (376)
..++.+.+.|+|+|-+.+- .+.+. -. ....+.+.++.++.+ ..++|+.+=+-. | +.+..+..+.+..
T Consensus 112 ~~ve~a~~~GAdaV~vlv~------~~~d~-~~--~~~~~~i~~v~~~~~-~~G~p~lv~~~~~g~~v~~~~~~~~~v~~ 181 (304)
T 1to3_A 112 INAQAVKRDGAKALKLLVL------WRSDE-DA--QQRLNMVKEFNELCH-SNGLLSIIEPVVRPPRCGDKFDREQAIID 181 (304)
T ss_dssp CCHHHHHHTTCCEEEEEEE------ECTTS-CH--HHHHHHHHHHHHHHH-TTTCEEEEEEEECCCSSCSCCCHHHHHHH
T ss_pred hhHHHHHHcCCCEEEEEEE------cCCCc-cH--HHHHHHHHHHHHHHH-HcCCcEEEEEECCCCccccCCChhHHHHH
Confidence 3455677889999985431 01110 00 112233444444433 347887766521 1 2221222133333
Q ss_pred HHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhh---CCCCe-EEEecCCCCHH----HHHHHHHcC
Q 017176 158 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD---FPDLT-FTLNGGINTVD----EVNAALRKG 229 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~---~~~ip-Vi~nGgI~s~~----da~~~l~~G 229 (376)
.++.+.+.|+|++-+|.... ++. .++.+.++++. ...+| |+..||+ +.+ .+..+++.|
T Consensus 182 aa~~a~~lGaD~iKv~~~~~---~~g----------~~~~~~~vv~~~~~~~~~P~Vv~aGG~-~~~~~~~~~~~a~~aG 247 (304)
T 1to3_A 182 AAKELGDSGADLYKVEMPLY---GKG----------ARSDLLTASQRLNGHINMPWVILSSGV-DEKLFPRAVRVAMEAG 247 (304)
T ss_dssp HHHHHTTSSCSEEEECCGGG---GCS----------CHHHHHHHHHHHHHTCCSCEEECCTTS-CTTTHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCEEEeCCCcC---CCC----------CHHHHHHHHHhccccCCCCeEEEecCC-CHHHHHHHHHHHHHcC
Confidence 34566779999999987421 111 14545555544 23799 9999999 553 466777789
Q ss_pred cCeeEEchHHhhC
Q 017176 230 AHHVMVGRAAYQN 242 (376)
Q Consensus 230 ad~VmiGRa~l~~ 242 (376)
+++|.+||++...
T Consensus 248 a~Gv~vGRaI~q~ 260 (304)
T 1to3_A 248 ASGFLAGRAVWSS 260 (304)
T ss_dssp CCEEEESHHHHGG
T ss_pred CeEEEEehHHhCc
Confidence 9999999999987
|
| >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00015 Score=64.40 Aligned_cols=73 Identities=16% Similarity=0.111 Sum_probs=55.2
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017176 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
+.|+|+|.+++......+ .. ..+..++.+.++++.. ++||++.|||. ++++.++++.|+|+|.+|++++..|
T Consensus 126 ~~g~d~i~~~~~~~~~~~----~~--~~~~~~~~l~~l~~~~-~~pvia~GGI~-~~nv~~~~~~Ga~gv~vgs~i~~~~ 197 (215)
T 1xi3_A 126 KKGADYLGAGSVFPTKTK----ED--ARVIGLEGLRKIVESV-KIPVVAIGGIN-KDNAREVLKTGVDGIAVISAVMGAE 197 (215)
T ss_dssp HHTCSEEEEECSSCC--------C--CCCCHHHHHHHHHHHC-SSCEEEESSCC-TTTHHHHHTTTCSEEEESHHHHTSS
T ss_pred hcCCCEEEEcCCccCCCC----CC--CCCcCHHHHHHHHHhC-CCCEEEECCcC-HHHHHHHHHcCCCEEEEhHHHhCCC
Confidence 579999998763211000 00 1234578888887765 89999999998 9999999889999999999999877
Q ss_pred c
Q 017176 244 W 244 (376)
Q Consensus 244 ~ 244 (376)
+
T Consensus 198 d 198 (215)
T 1xi3_A 198 D 198 (215)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0014 Score=64.06 Aligned_cols=123 Identities=9% Similarity=-0.041 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHCCCCEEEec-CCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHHHH
Q 017176 78 NLAKATELANAYNYDEINLN-CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQL 154 (376)
Q Consensus 78 ~~~~aa~~~~~~G~d~IeiN-~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~~~ 154 (376)
.+++.++.+.+.||..+-++ .|.+ + .+++.-.+++++||+.+ ++++.+...-+|.+ .++.
T Consensus 155 ~~~~~a~~~~~~G~~~~K~~k~g~~----------~----~~~~~d~~~v~avR~a~G~d~~l~vDan~~~~~---~~~A 217 (394)
T 3mqt_A 155 AYKPLIAKAKERGAKAVKVCIIPND----------K----VSDKEIVAYLRELREVIGWDMDMMVDCLYRWTD---WQKA 217 (394)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCCT----------T----SCHHHHHHHHHHHHHHHCSSSEEEEECTTCCSC---HHHH
T ss_pred HHHHHHHHHHHcCCCEEEecccCCC----------c----cCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCC---HHHH
Confidence 56667777888999999884 2210 0 35777888999999886 57888888877732 3344
Q ss_pred HHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCee
Q 017176 155 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHV 233 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~V 233 (376)
+++ .+.+++.|+++|. . .+++.+++..+++++.. ++||++.+.+.+++++.++++ ..+|.|
T Consensus 218 ~~~-~~~L~~~~i~~iE----e------------P~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~l~~~~~d~v 279 (394)
T 3mqt_A 218 RWT-FRQLEDIDLYFIE----A------------CLQHDDLIGHQKLAAAI-NTRLCGAEMSTTRFEAQEWLEKTGISVV 279 (394)
T ss_dssp HHH-HHHTGGGCCSEEE----S------------CSCTTCHHHHHHHHHHS-SSEEEECTTCCHHHHHHHHHHHHCCSEE
T ss_pred HHH-HHHHhhcCCeEEE----C------------CCCcccHHHHHHHHhhC-CCCEEeCCCcCCHHHHHHHHHcCCCCeE
Confidence 443 4566789999885 1 11223467777877765 899999999999999999998 679998
Q ss_pred EE
Q 017176 234 MV 235 (376)
Q Consensus 234 mi 235 (376)
++
T Consensus 280 ~~ 281 (394)
T 3mqt_A 280 QS 281 (394)
T ss_dssp CC
T ss_pred ec
Confidence 87
|
| >3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0029 Score=61.55 Aligned_cols=133 Identities=8% Similarity=0.078 Sum_probs=97.7
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecC
Q 017176 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRI 143 (376)
Q Consensus 66 p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~ 143 (376)
|+-..+...+++.+++.++...+.||..+-+..|. +++.-.+.+++||+.+ +.++.+...-
T Consensus 133 ~~y~t~g~~~~e~~~~~a~~~~~~Gf~~~KlK~g~-----------------~~~~d~~~v~avR~a~g~~~~L~vDaN~ 195 (379)
T 3r0u_A 133 VTDVSISCGNVAETIQNIQNGVEANFTAIKVKTGA-----------------DFNRDIQLLKALDNEFSKNIKFRFDANQ 195 (379)
T ss_dssp EBCEEECCCCHHHHHHHHHHHHHTTCCEEEEECSS-----------------CHHHHHHHHHHHHHHCCTTSEEEEECTT
T ss_pred EEEEEecCCCHHHHHHHHHHHHHcCCCEEeeecCC-----------------CHHHHHHHHHHHHHhcCCCCeEEEeCCC
Confidence 34445556789999988888888899999887542 3566778899999987 4688888887
Q ss_pred CCCCCccHHHHHHHHHHHhhc--CCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHH
Q 017176 144 GVDDHDSYNQLCDFIYKVSSL--SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE 221 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~--~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~d 221 (376)
+|+. ++.+++ .+.+++ .|+.+|. . .+++.+++..+++.+.. ++||.++..+.+..+
T Consensus 196 ~w~~----~~A~~~-~~~l~~~~~~l~~iE----e------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~ 253 (379)
T 3r0u_A 196 GWNL----AQTKQF-IEEINKYSLNVEIIE----Q------------PVKYYDIKAMAEITKFS-NIPVVADESVFDAKD 253 (379)
T ss_dssp CCCH----HHHHHH-HHHHHTSCCCEEEEE----C------------CSCTTCHHHHHHHHHHC-SSCEEESTTCSSHHH
T ss_pred CcCH----HHHHHH-HHHHhhcCCCcEEEE----C------------CCCcccHHHHHHHHhcC-CCCEEeCCccCCHHH
Confidence 7753 344443 445667 6777765 1 11223467777887765 899999999999999
Q ss_pred HHHHHH-cCcCeeEEch
Q 017176 222 VNAALR-KGAHHVMVGR 237 (376)
Q Consensus 222 a~~~l~-~Gad~VmiGR 237 (376)
+.++++ ..+|.|++--
T Consensus 254 ~~~~i~~~a~d~v~~k~ 270 (379)
T 3r0u_A 254 AERVIDEQACNMINIKL 270 (379)
T ss_dssp HHHHHHTTCCSEEEECH
T ss_pred HHHHHHcCCCCEEEECc
Confidence 999999 5589998843
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00013 Score=66.90 Aligned_cols=79 Identities=18% Similarity=0.311 Sum_probs=61.7
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.+.+.|+|.+++--=++...|. +.+++.+.++.++. .+|+..-|||+|.++++++++.|||-|.+|+.
T Consensus 37 a~~~~~~gad~lhvvDld~a~~~~---------~~~~~~i~~i~~~~-~~pl~vGGGIrs~e~~~~~l~~GadkVii~t~ 106 (243)
T 4gj1_A 37 FKEYEKAGAKELHLVDLTGAKDPS---------KRQFALIEKLAKEV-SVNLQVGGGIRSKEEVKALLDCGVKRVVIGSM 106 (243)
T ss_dssp HHHHHHHTCCEEEEEEHHHHHCGG---------GCCHHHHHHHHHHC-CSEEEEESSCCCHHHHHHHHHTTCSEEEECTT
T ss_pred HHHHHHCCCCEEEEEecCcccccc---------hhHHHHHHHHHHhc-CCCeEeccccccHHHHHHHHHcCCCEEEEccc
Confidence 345667899999875322111111 12367888888875 89999999999999999999999999999999
Q ss_pred HhhCCchhh
Q 017176 239 AYQNPWYTL 247 (376)
Q Consensus 239 ~l~~P~lf~ 247 (376)
++.||.++.
T Consensus 107 a~~~p~li~ 115 (243)
T 4gj1_A 107 AIKDATLCL 115 (243)
T ss_dssp TTTCHHHHH
T ss_pred cccCCchHH
Confidence 999999853
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00022 Score=65.41 Aligned_cols=168 Identities=15% Similarity=0.112 Sum_probs=91.4
Q ss_pred CEEEEecC--CCHHHHHHHHHHHHHCCCCEEEecCC--CCCcc---ccCCCCcccccc--CCHHHHHHHHHHHhcccCcc
Q 017176 66 PIVLQIGG--SNLDNLAKATELANAYNYDEINLNCG--CPSPK---VAGHGCFGVSLM--LDPKFVGEAMSVIAANTNVP 136 (376)
Q Consensus 66 p~~vQL~g--~~~~~~~~aa~~~~~~G~d~IeiN~g--cP~~~---v~r~g~yG~~l~--~~~~~~~eiv~~v~~~~~~p 136 (376)
-++.=+.. .+.+...+.++.+.++|+|.|||.+= -|... +.+.. --+|. -+.+.+.++++++|+. +|
T Consensus 15 ali~yitaG~P~~~~t~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~--~rAL~~g~~~~~~~~~~~~~r~~--~P 90 (252)
T 3tha_A 15 ANVAYTVLGYPNLQTSEAFLQRLDQSPIDILELGVAYSDPIADGEIIADAA--KIALDQGVDIHSVFELLARIKTK--KA 90 (252)
T ss_dssp EEEEEEETTSSCHHHHHHHHHTGGGSSCSEEEEECCCSCCCSCCCHHHHHH--HHHHHTTCCHHHHHHHHHHCCCS--SE
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCcHHHHHHH--HHHHHCCCCHHHHHHHHHHHhcC--CC
Confidence 34544433 46688999999999999999999652 22210 00000 00111 2567888899988865 67
Q ss_pred EEEEe------cCCCCCC----------------ccHHHHHHHHHHHhhcCCccEEEE-ccCcc---------cc-----
Q 017176 137 VSVKC------RIGVDDH----------------DSYNQLCDFIYKVSSLSPTRHFII-HSRKA---------LL----- 179 (376)
Q Consensus 137 v~vKi------R~g~~~~----------------~~~~~~~~~i~~~~e~~Gvd~I~v-h~r~~---------~~----- 179 (376)
+.+=. +.|.+.. -.++|.. .+...+++.|++.|.+ ...+. ..
T Consensus 91 ivlm~Y~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~eE~~-~~~~~~~~~Gl~~I~lvaP~t~~eRi~~ia~~a~gFiY 169 (252)
T 3tha_A 91 LVFMVYYNLIFSYGLEKFVKKAKSLGICALIVPELSFEESD-DLIKECERYNIALITLVSVTTPKERVKKLVKHAKGFIY 169 (252)
T ss_dssp EEEECCHHHHHHHCHHHHHHHHHHTTEEEEECTTCCGGGCH-HHHHHHHHTTCEECEEEETTSCHHHHHHHHTTCCSCEE
T ss_pred EEEEeccCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHHHHH-HHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHhCCCeEE
Confidence 65521 1111100 0011111 1122344556655543 11110 00
Q ss_pred ----CCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017176 180 ----NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 180 ----~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
.|..+... .......+.+.++++. .++||+..+||.+++++.++.+ +||+|.+|++++.
T Consensus 170 ~Vs~~GvTG~~~-~~~~~~~~~v~~vr~~-~~~Pv~vGfGIst~e~a~~~~~-~ADGVIVGSAiVk 232 (252)
T 3tha_A 170 LLASIGITGTKS-VEEAILQDKVKEIRSF-TNLPIFVGFGIQNNQDVKRMRK-VADGVIVGTSIVK 232 (252)
T ss_dssp EECCSCSSSCSH-HHHHHHHHHHHHHHTT-CCSCEEEESSCCSHHHHHHHTT-TSSEEEECHHHHH
T ss_pred EEecCCCCCccc-CCCHHHHHHHHHHHHh-cCCcEEEEcCcCCHHHHHHHHh-cCCEEEECHHHHH
Confidence 12122110 0000012355555544 5899999999999999998876 6999999999874
|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00022 Score=65.21 Aligned_cols=75 Identities=16% Similarity=0.045 Sum_probs=54.9
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
+.|+|+|.+........ .. ..++..++.+.++.+.. .++||++-||| +++++.++++.|||+|.+|++++..
T Consensus 153 ~~GaDyI~vgpvf~T~t----K~--~~~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~~aGa~gvav~sai~~a 225 (243)
T 3o63_A 153 AGDADYFCVGPCWPTPT----KP--GRAAPGLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVLDAGARRIVVVRAITSA 225 (243)
T ss_dssp HSSCSEEEECCSSCCCC-----------CCCHHHHHHHHTC---CCCEEEESSC-CTTTHHHHHHTTCCCEEESHHHHTC
T ss_pred hCCCCEEEEcCccCCCC----CC--CcchhhHHHHHHHHHhccCCCCEEEecCC-CHHHHHHHHHcCCCEEEEeHHHhCC
Confidence 58999999975321110 00 01234578888877653 48999999999 9999999999999999999999987
Q ss_pred Cch
Q 017176 243 PWY 245 (376)
Q Consensus 243 P~l 245 (376)
++.
T Consensus 226 ~dp 228 (243)
T 3o63_A 226 DDP 228 (243)
T ss_dssp SSH
T ss_pred CCH
Confidence 664
|
| >2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0016 Score=57.82 Aligned_cols=125 Identities=16% Similarity=0.146 Sum_probs=75.6
Q ss_pred HHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccH-HHHHHH
Q 017176 79 LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSY-NQLCDF 157 (376)
Q Consensus 79 ~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~-~~~~~~ 157 (376)
....++.+.++|+|.|.+|... | . +.++.+++.. -+++.......+..+. .+.++.
T Consensus 67 ~~~~v~~~~~~Gad~vtvh~~~-----------g------~----~~i~~~~~~~--gv~vl~~t~~~~~~~~~~~~v~~ 123 (208)
T 2czd_A 67 NRLIARKVFGAGADYVIVHTFV-----------G------R----DSVMAVKELG--EIIMVVEMSHPGALEFINPLTDR 123 (208)
T ss_dssp HHHHHHHHHHTTCSEEEEESTT-----------C------H----HHHHHHHTTS--EEEEECCCCSGGGGTTTGGGHHH
T ss_pred HHHHHHHHHhcCCCEEEEeccC-----------C------H----HHHHHHHHhC--CcEEEEecCCcchhhHHHHHHHH
Confidence 3445566668999999998521 2 1 1244555443 3444444332221111 233444
Q ss_pred HHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCC-HHHHHHHHHcCcCeeEEc
Q 017176 158 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT-VDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s-~~da~~~l~~Gad~VmiG 236 (376)
++.+..+.|++.+.+.+.. .+.+.++++..+.-+++..|||.. ..++.++++.|+|.+.+|
T Consensus 124 ~~~~a~~~G~~G~~~~~~~------------------~~~i~~lr~~~~~~~~iv~gGI~~~g~~~~~~~~aGad~vvvG 185 (208)
T 2czd_A 124 FIEVANEIEPFGVIAPGTR------------------PERIGYIRDRLKEGIKILAPGIGAQGGKAKDAVKAGADYIIVG 185 (208)
T ss_dssp HHHHHHHHCCSEEECCCSS------------------THHHHHHHHHSCTTCEEEECCCCSSTTHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHhCCcEEEECCCC------------------hHHHHHHHHhCCCCeEEEECCCCCCCCCHHHHHHcCCCEEEEC
Confidence 5556667899887655321 233445555444345779999985 337888888999999999
Q ss_pred hHHhhCCc
Q 017176 237 RAAYQNPW 244 (376)
Q Consensus 237 Ra~l~~P~ 244 (376)
|+++..+.
T Consensus 186 r~I~~a~d 193 (208)
T 2czd_A 186 RAIYNAPN 193 (208)
T ss_dssp HHHHTSSS
T ss_pred hHHhcCCC
Confidence 99997654
|
| >3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00044 Score=67.65 Aligned_cols=128 Identities=7% Similarity=-0.101 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHHHH
Q 017176 77 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQL 154 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~~~ 154 (376)
+.+.+.|+++.+.||+.+.++.|..... -.+ .++++...++++++|+.+ ++++.+...-+|+ .++.
T Consensus 150 e~~~~~a~~~~~~Gf~~vKik~g~~~~~-------~~~-~~~~~~~~e~v~avR~~~g~d~~l~vDan~~~~----~~~a 217 (392)
T 3p3b_A 150 ALMQEEAMQGYAKGQRHFKIKVGRGGRH-------MPL-WEGTKRDIAIVRGISEVAGPAGKIMIDANNAYN----LNLT 217 (392)
T ss_dssp HHHHHHHHHHHHTTCCCEEEECCHHHHT-------SCH-HHHHHHHHHHHHHHHHHHCTTCCEEEECTTCCC----HHHH
T ss_pred HHHHHHHHHHHHhCCCEEEECcCcCccc-------CCc-cccHHHHHHHHHHHHHHhCCCCeEEEECCCCCC----HHHH
Confidence 8999999999999999999986532110 001 236678889999999876 4677776655553 4555
Q ss_pred HHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC----CCCeEEEecCCCCHHHHHHHHH-cC
Q 017176 155 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF----PDLTFTLNGGINTVDEVNAALR-KG 229 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~----~~ipVi~nGgI~s~~da~~~l~-~G 229 (376)
++++ +.+++.|+++|.- + ++ .+++..+++++.. .++||++.+ +.++++++++++ ..
T Consensus 218 i~~~-~~l~~~~i~~iE~----P------------~~-~d~~~~~~l~~~l~~~g~~iPIa~dE-~~~~~~~~~~i~~~~ 278 (392)
T 3p3b_A 218 KEVL-AALSDVNLYWLEE----A------------FH-EDEALYEDLKEWLGQRGQNVLIADGE-GLASPHLIEWATRGR 278 (392)
T ss_dssp HHHH-HHTTTSCEEEEEC----S------------SS-CCHHHHHHHHHHHHHHTCCCEEEECC-SSCCTTHHHHHHTTS
T ss_pred HHHH-HHHHhcCCCEEec----C------------Cc-ccHHHHHHHHHhhccCCCCccEEecC-CCCHHHHHHHHHcCC
Confidence 6654 4567888887651 1 11 2366667776651 389999999 999999999998 45
Q ss_pred cCeeEE
Q 017176 230 AHHVMV 235 (376)
Q Consensus 230 ad~Vmi 235 (376)
+|.|++
T Consensus 279 ~d~v~i 284 (392)
T 3p3b_A 279 VDVLQY 284 (392)
T ss_dssp CCEECC
T ss_pred CCEEEe
Confidence 898876
|
| >2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00029 Score=63.17 Aligned_cols=75 Identities=16% Similarity=0.039 Sum_probs=53.2
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017176 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
+.|+|+|.+..-.. .+.. . ....+..++.+.++++...++||++.|||. ++++.++++.|+|+|.+|++++..+
T Consensus 134 ~~g~d~v~~~~v~~--t~~~-~--~~~~~~~~~~l~~~~~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv~vgs~i~~~~ 207 (227)
T 2tps_A 134 EDGADYVGLGPIYP--TETK-K--DTRAVQGVSLIEAVRRQGISIPIVGIGGIT-IDNAAPVIQAGADGVSMISAISQAE 207 (227)
T ss_dssp HHTCSEEEECCSSC--CCSS-S--SCCCCCTTHHHHHHHHTTCCCCEEEESSCC-TTTSHHHHHTTCSEEEESHHHHTSS
T ss_pred hCCCCEEEECCCcC--CCCC-C--CCCCccCHHHHHHHHHhCCCCCEEEEcCCC-HHHHHHHHHcCCCEEEEhHHhhcCC
Confidence 57999999732110 0000 0 011233478888887765239999999998 9999999999999999999998765
Q ss_pred c
Q 017176 244 W 244 (376)
Q Consensus 244 ~ 244 (376)
+
T Consensus 208 d 208 (227)
T 2tps_A 208 D 208 (227)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0019 Score=63.13 Aligned_cols=123 Identities=11% Similarity=-0.052 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHCCCCEEEec-CCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHHHH
Q 017176 78 NLAKATELANAYNYDEINLN-CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQL 154 (376)
Q Consensus 78 ~~~~aa~~~~~~G~d~IeiN-~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~~~ 154 (376)
.+++.++.+.+.||..+-++ .|.+ ..+++.-.+++++||+.+ ++++.+...-+|.+ .++.
T Consensus 160 ~~~~~a~~~~~~G~~~~K~~k~g~~--------------~~~~~~d~e~v~avR~a~G~d~~l~vDaN~~~~~---~~~A 222 (394)
T 3mkc_A 160 GYAPLLEKAKAHNIRAVKVCVPIKA--------------DWSTKEVAYYLRELRGILGHDTDMMVDYLYRFTD---WYEV 222 (394)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTC--------------CCCHHHHHHHHHHHHHHHCSSSEEEEECTTCCCC---HHHH
T ss_pred HHHHHHHHHHHcCCCEEEeCccCCC--------------ccCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCC---HHHH
Confidence 56667777788899999884 2211 035677888999999887 57888888777732 3344
Q ss_pred HHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCee
Q 017176 155 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHV 233 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~V 233 (376)
+++ .+.+++.|+++|.- .+++.+++..+++++.. ++||++.+.+.+++++.++++ ..+|.|
T Consensus 223 ~~~-~~~L~~~~i~~iEe----------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~l~~~~~d~v 284 (394)
T 3mkc_A 223 ARL-LNSIEDLELYFAEA----------------TLQHDDLSGHAKLVENT-RSRICGAEMSTTRFEAEEWITKGKVHLL 284 (394)
T ss_dssp HHH-HHHTGGGCCSEEES----------------CSCTTCHHHHHHHHHHC-SSCBEECTTCCHHHHHHHHHHTTCCSEE
T ss_pred HHH-HHHhhhcCCeEEEC----------------CCCchhHHHHHHHHhhC-CCCEEeCCCCCCHHHHHHHHHcCCCCeE
Confidence 444 45667889998751 11222467777777765 899999999999999999998 568998
Q ss_pred EE
Q 017176 234 MV 235 (376)
Q Consensus 234 mi 235 (376)
++
T Consensus 285 ~~ 286 (394)
T 3mkc_A 285 QS 286 (394)
T ss_dssp CC
T ss_pred ec
Confidence 87
|
| >3tcs_A Racemase, putative; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, TIM barrel; HET: PG4; 1.88A {Roseobacter denitrificans} PDB: 3u4f_A 3t9p_A 3t8q_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0024 Score=62.38 Aligned_cols=131 Identities=9% Similarity=0.063 Sum_probs=92.2
Q ss_pred CHHHHHHHH-HHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccH
Q 017176 75 NLDNLAKAT-ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSY 151 (376)
Q Consensus 75 ~~~~~~~aa-~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~ 151 (376)
++++.++.+ +...+.||..+-+..|++... .....++...+.+++||+.+ ++++.+...-+|+.
T Consensus 146 ~~~~~~~~~~~~~~~~Gf~~~K~KvG~~~~~---------d~~~~~~~~~~~v~avReavG~d~~l~vDaN~~~~~---- 212 (388)
T 3tcs_A 146 TPRDEAERLKRLRDTQGFTAFKVRAGAEVGR---------NRDEWPGRTEEIIPTMRRELGDDVDLLIDANSCYTP---- 212 (388)
T ss_dssp CHHHHHHHHHHHHHHHCCCEEEEECSCTTCT---------TCCSSTTHHHHHHHHHHHHHCSSSEEEEECTTCCCH----
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEccCCCccc---------ccccchhHHHHHHHHHHHHhCCCCeEEEeCCCCcCH----
Confidence 566555544 444577999999998876421 11123556778899999886 57888988888863
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCc
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGA 230 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Ga 230 (376)
++.+++ .+.+++.|+.+|. . .+++.+++.++++.+.. ++||.+...+.+..++.++++ ..+
T Consensus 213 ~~A~~~-~~~l~~~~i~~iE----e------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~a~ 274 (388)
T 3tcs_A 213 DRAIEV-GHMLQDHGFCHFE----E------------PCPYWELAQTKQVTDAL-DIDVTGGEQDCDLPTWQRMIDMRAV 274 (388)
T ss_dssp HHHHHH-HHHHHHTTCCEEE----C------------CSCTTCHHHHHHHHHHC-SSCEEECTTCCCHHHHHHHHHHTCC
T ss_pred HHHHHH-HHHHhhcCCeEEE----C------------CCCccCHHHHHHHHHhc-CCCEEcCCccCCHHHHHHHHHcCCC
Confidence 344443 3456778998874 1 12223477777887765 899999999999999999998 568
Q ss_pred CeeEEc
Q 017176 231 HHVMVG 236 (376)
Q Consensus 231 d~VmiG 236 (376)
|.|++-
T Consensus 275 d~v~~d 280 (388)
T 3tcs_A 275 DIVQPD 280 (388)
T ss_dssp SEECCC
T ss_pred CEEEeC
Confidence 988763
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0018 Score=58.01 Aligned_cols=152 Identities=16% Similarity=0.150 Sum_probs=89.2
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCcc-----ccC-----CCCccccccCCHHHHHHHHHHHhc--
Q 017176 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPK-----VAG-----HGCFGVSLMLDPKFVGEAMSVIAA-- 131 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~-----v~r-----~g~yG~~l~~~~~~~~eiv~~v~~-- 131 (376)
..|++.=|-+.+++++.+.++.+.+.|++.|++..-.|... ..+ .-.+|. + -+.+.+...+++=.+
T Consensus 15 ~~~~i~v~r~~~~~~~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~~~~~vgagt-v-i~~d~~~~A~~aGAd~v 92 (214)
T 1wbh_A 15 TGPVVPVIVVKKLEHAVPMAKALVAGGVRVLNVTLRTECAVDAIRAIAKEVPEAIVGAGT-V-LNPQQLAEVTEAGAQFA 92 (214)
T ss_dssp SCSEEEEECCSSGGGHHHHHHHHHHTTCCEEEEESCSTTHHHHHHHHHHHCTTSEEEEES-C-CSHHHHHHHHHHTCSCE
T ss_pred HCCEEEEEECCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHHCcCCEEeeCE-E-EEHHHHHHHHHcCCCEE
Confidence 56788888888999999999999999999999975433210 000 001122 1 122222222221000
Q ss_pred --------------ccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHH
Q 017176 132 --------------NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 197 (376)
Q Consensus 132 --------------~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~ 197 (376)
..+.++.. |. .+..|..+ +.+.|+|+|.+++... ....++
T Consensus 93 ~~p~~d~~v~~~~~~~g~~~i~----G~---~t~~e~~~-----A~~~Gad~v~~Fpa~~--------------~gG~~~ 146 (214)
T 1wbh_A 93 ISPGLTEPLLKAATEGTIPLIP----GI---STVSELML-----GMDYGLKEFKFFPAEA--------------NGGVKA 146 (214)
T ss_dssp EESSCCHHHHHHHHHSSSCEEE----EE---SSHHHHHH-----HHHTTCCEEEETTTTT--------------TTHHHH
T ss_pred EcCCCCHHHHHHHHHhCCCEEE----ec---CCHHHHHH-----HHHCCCCEEEEecCcc--------------ccCHHH
Confidence 01112111 11 11222211 1246666666654110 011567
Q ss_pred HHHHHhhCCCCeEEEecCCCCHHHHHHHHHc-CcCeeEEchHHhhCCch
Q 017176 198 YYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 198 v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~-Gad~VmiGRa~l~~P~l 245 (376)
+++++..++++||++.||| +++.+.+.++. |+++|. |+++...+.+
T Consensus 147 lk~i~~~~~~ipvvaiGGI-~~~n~~~~l~agg~~~v~-gS~i~~~~~~ 193 (214)
T 1wbh_A 147 LQAIAGPFSQVRFCPTGGI-SPANYRDYLALKSVLCIG-GSWLVPADAL 193 (214)
T ss_dssp HHHHHTTCTTCEEEEBSSC-CTTTHHHHHTSTTBSCEE-EGGGSCHHHH
T ss_pred HHHHhhhCCCCeEEEECCC-CHHHHHHHHhcCCCeEEE-eccccChhhh
Confidence 7888777779999999999 57899999996 999999 9988776664
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00042 Score=62.85 Aligned_cols=153 Identities=11% Similarity=0.083 Sum_probs=96.3
Q ss_pred CCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCcc-----c---cCCCCccccccCCHHHHHHHHHHHhcc----
Q 017176 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPK-----V---AGHGCFGVSLMLDPKFVGEAMSVIAAN---- 132 (376)
Q Consensus 65 ~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~-----v---~r~g~yG~~l~~~~~~~~eiv~~v~~~---- 132 (376)
.+++.=+.+.++++..+.++.+.+.|++.||+.+-.|... . ...-.-|+.-.-+.+.+...+++=.+.
T Consensus 34 ~~vv~Vir~~~~~~a~~~a~al~~gGi~~iEvt~~t~~a~e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai~AGA~fIvsP 113 (232)
T 4e38_A 34 LKVIPVIAIDNAEDIIPLGKVLAENGLPAAEITFRSDAAVEAIRLLRQAQPEMLIGAGTILNGEQALAAKEAGATFVVSP 113 (232)
T ss_dssp HCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTCEEEEECCCSHHHHHHHHHHTCSEEECS
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCCEEeECCcCCHHHHHHHHHcCCCEEEeC
Confidence 4677778899999999999999999999999977655310 0 000011222223455555555441110
Q ss_pred ------------cCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHH
Q 017176 133 ------------TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA 200 (376)
Q Consensus 133 ------------~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~ 200 (376)
.++|+.. |. .+..|+.+ +.+.|+|+|-+...... . ..+++++
T Consensus 114 ~~~~~vi~~~~~~gi~~ip----Gv---~TptEi~~-----A~~~Gad~vK~FPa~~~-g-------------G~~~lka 167 (232)
T 4e38_A 114 GFNPNTVRACQEIGIDIVP----GV---NNPSTVEA-----ALEMGLTTLKFFPAEAS-G-------------GISMVKS 167 (232)
T ss_dssp SCCHHHHHHHHHHTCEEEC----EE---CSHHHHHH-----HHHTTCCEEEECSTTTT-T-------------HHHHHHH
T ss_pred CCCHHHHHHHHHcCCCEEc----CC---CCHHHHHH-----HHHcCCCEEEECcCccc-c-------------CHHHHHH
Confidence 1222211 11 12334322 23689999988654211 1 1577888
Q ss_pred HHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 201 LLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 201 ~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
++.-++++|++..||| +++.+.+.++.|+.++.+|..+. +|.+
T Consensus 168 l~~p~p~ip~~ptGGI-~~~n~~~~l~aGa~~~vgGs~l~-~~~~ 210 (232)
T 4e38_A 168 LVGPYGDIRLMPTGGI-TPSNIDNYLAIPQVLACGGTWMV-DKKL 210 (232)
T ss_dssp HHTTCTTCEEEEBSSC-CTTTHHHHHTSTTBCCEEECGGG-CHHH
T ss_pred HHHHhcCCCeeeEcCC-CHHHHHHHHHCCCeEEEECchhc-ChHH
Confidence 8877789999999999 58999999999999988877553 4443
|
| >3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0017 Score=63.77 Aligned_cols=123 Identities=10% Similarity=0.097 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHHH
Q 017176 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQ 153 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 153 (376)
++.+++.++.+.+.||+.+.++.+ | + .+ .+.+++||+.+ ++++.|...-+|+..+ + +
T Consensus 164 ~e~~~~~a~~~~~~G~~~iKlKv~-~-------~-------~d----~~~v~avR~a~G~~~~L~vDaN~~w~~~~-~-~ 222 (400)
T 3mwc_A 164 IETLIHQVEESLQEGYRRIKIKIK-P-------G-------WD----VEPLQETRRAVGDHFPLWTDANSSFELDQ-W-E 222 (400)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEECB-T-------T-------BS----HHHHHHHHHHHCTTSCEEEECTTCCCGGG-H-H
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeC-c-------c-------hH----HHHHHHHHHhcCCCCEEEEeCCCCCCHHH-H-H
Confidence 899999998888889999999863 1 0 12 45677777765 5789999888887533 2 3
Q ss_pred HHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCe
Q 017176 154 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHH 232 (376)
Q Consensus 154 ~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~ 232 (376)
+ .+.+++.|+++|. . .+++.+++..+++.+.. ++||.+...+.+.+++.++++ ..+|.
T Consensus 223 ~----~~~l~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~~~~~~~d~ 281 (400)
T 3mwc_A 223 T----FKAMDAAKCLFHE----Q------------PLHYEALLDLKELGERI-ETPICLDESLISSRVAEFVAKLGISNI 281 (400)
T ss_dssp H----HHHHGGGCCSCEE----S------------CSCTTCHHHHHHHHHHS-SSCEEESTTCCSHHHHHHHHHTTCCSE
T ss_pred H----HHHHHhcCCCEEe----C------------CCChhhHHHHHHHHhhC-CCCEEEeCCcCCHHHHHHHHhcCCCCE
Confidence 2 3456778988875 1 12233477777877765 899999999999999999998 56899
Q ss_pred eEEchHHh
Q 017176 233 VMVGRAAY 240 (376)
Q Consensus 233 VmiGRa~l 240 (376)
|++--+-.
T Consensus 282 v~~k~~~~ 289 (400)
T 3mwc_A 282 WNIKIQRV 289 (400)
T ss_dssp EEECHHHH
T ss_pred EEEcchhh
Confidence 98844433
|
| >2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0012 Score=61.37 Aligned_cols=135 Identities=14% Similarity=0.130 Sum_probs=84.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHH---HHHHHHHHHhcccCccEEEEecCCCCCCccH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK---FVGEAMSVIAANTNVPVSVKCRIGVDDHDSY 151 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~---~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~ 151 (376)
..+.-+.-++.+.+.|+|.||+-+ + +|..+..+.+ .+.+-+.+|++.++ ...+|+-+-.....+
T Consensus 104 ~~~~Kv~E~~~Av~~GAdEIDmVi-----n------ig~lksg~~~~~~~v~~eI~~v~~a~~-~~~lKVIlEt~~L~d- 170 (281)
T 2a4a_A 104 SMEKVLNDTEKALDDGADEIDLVI-----N------YKKIIENTDEGLKEATKLTQSVKKLLT-NKILKVIIEVGELKT- 170 (281)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEC-----C------HHHHHHSHHHHHHHHHHHHHHHHTTCT-TSEEEEECCHHHHCS-
T ss_pred CHHHHHHHHHHHHHcCCCEEEEec-----c------hHhhhCCChhHHHHHHHHHHHHHHHhc-CCceEEEEecccCCc-
Confidence 344444455666777999999853 1 3544455667 88888899988874 245666553211111
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhh--------CCCCeEEEecCCCCHHHHH
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD--------FPDLTFTLNGGINTVDEVN 223 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~--------~~~ipVi~nGgI~s~~da~ 223 (376)
++.+....++..++|+|+|-.+.+... .| + .+-+...+.+.+++ -.+++|-++|||+|.+++.
T Consensus 171 ~e~i~~A~~ia~eaGADfVKTSTGf~~-~g---A-----T~edv~lm~~~v~~~~~~~~~tg~~vgVKaaGGIrt~e~al 241 (281)
T 2a4a_A 171 EDLIIKTTLAVLNGNADFIKTSTGKVQ-IN---A-----TPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTAS 241 (281)
T ss_dssp HHHHHHHHHHHHTTTCSEEECCCSCSS-CC---C-----CHHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSCCSHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCCCCC-CC---C-----CHHHHHHHHHHHHHhhcccccCCCCceEEEeCCCCCHHHHH
Confidence 233333456677899999987643210 11 1 01113344455432 2479999999999999999
Q ss_pred HHHHcCcC
Q 017176 224 AALRKGAH 231 (376)
Q Consensus 224 ~~l~~Gad 231 (376)
++++.|++
T Consensus 242 ~~i~aga~ 249 (281)
T 2a4a_A 242 HYILLARR 249 (281)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhh
Confidence 99987665
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0026 Score=59.75 Aligned_cols=201 Identities=11% Similarity=0.092 Sum_probs=115.5
Q ss_pred CCChHHHHHHHHHhCCCcEEEecceeec--ccccccc---hhhhhhc----c-CCCCCCEEEEe---cCCCHHHHHHHHH
Q 017176 18 DWTDNHYRTLARLISKHAWLYTEMLAAE--TIIYQQG---NLDRFLA----F-SPEQHPIVLQI---GGSNLDNLAKATE 84 (376)
Q Consensus 18 ~~td~~~r~~~~~~Gg~gl~~te~v~~~--~~~~~~~---~~~~~~~----~-~~~~~p~~vQL---~g~~~~~~~~aa~ 84 (376)
+.-|.....++.+.| +..+++.-.+.. .+...+. .....+. + ...+.|+++-+ +| +++...+.++
T Consensus 28 ~a~D~~sA~l~e~aG-f~ai~vs~~s~a~~~~G~pD~~~vt~~em~~~~~~I~r~~~~PviaD~d~Gyg-~~~~v~~~v~ 105 (298)
T 3eoo_A 28 GAITAYAAKMAEAVG-FKAVYLSGGGVAANSLGIPDLGISTMDDVLVDANRITNATNLPLLVDIDTGWG-GAFNIARTIR 105 (298)
T ss_dssp ECSSHHHHHHHHHHT-CSCEEECHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHCCSCEEEECTTCSS-SHHHHHHHHH
T ss_pred cCCCHHHHHHHHHcC-CCEEEECcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhhcCCeEEEECCCCCC-CHHHHHHHHH
Confidence 556778877777776 676665532221 1222211 0111110 1 11356777765 34 7888899999
Q ss_pred HHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcc-cCccEEEEecCCCCCCccHHHHHHHHHHHhh
Q 017176 85 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSS 163 (376)
Q Consensus 85 ~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~-~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e 163 (376)
.+.++|+.+|.|--+... |.+.+.. |..|. ..+...+-+++.+++ .+.++.|--|..-.....+++.++.. +.+.
T Consensus 106 ~l~~aGaagv~iEDq~~~-k~cGh~~-gk~l~-~~~e~~~ri~Aa~~A~~~~~~~I~ARTDa~~~~gldeai~Ra-~ay~ 181 (298)
T 3eoo_A 106 SFIKAGVGAVHLEDQVGQ-KRCGHRP-GKECV-PAGEMVDRIKAAVDARTDETFVIMARTDAAAAEGIDAAIERA-IAYV 181 (298)
T ss_dssp HHHHTTCSEEEEECBCCC-CCTTCCC-CCCBC-CHHHHHHHHHHHHHHCSSTTSEEEEEECTHHHHHHHHHHHHH-HHHH
T ss_pred HHHHhCCeEEEECCCCCC-cccCCCC-CCeec-CHHHHHHHHHHHHHhccCCCeEEEEeehhhhhcCHHHHHHHH-HhhH
Confidence 999999999999765432 3233322 33444 444444444444443 34556665665211112355666553 4556
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEe---cCCCCHHHHHHHHHcCcCeeEEchHHh
Q 017176 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN---GGINTVDEVNAALRKGAHHVMVGRAAY 240 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~n---GgI~s~~da~~~l~~Gad~VmiGRa~l 240 (376)
++|+|.|-+++.+. .+.+.++.+.+ ++||++| +|-...-+..++-+.|+..|.+|-.++
T Consensus 182 ~AGAD~if~~~~~~-----------------~ee~~~~~~~~-~~Pl~~n~~~~g~tp~~~~~eL~~lGv~~v~~~~~~~ 243 (298)
T 3eoo_A 182 EAGADMIFPEAMKT-----------------LDDYRRFKEAV-KVPILANLTEFGSTPLFTLDELKGANVDIALYCCGAY 243 (298)
T ss_dssp HTTCSEEEECCCCS-----------------HHHHHHHHHHH-CSCBEEECCTTSSSCCCCHHHHHHTTCCEEEECSHHH
T ss_pred hcCCCEEEeCCCCC-----------------HHHHHHHHHHc-CCCeEEEeccCCCCCCCCHHHHHHcCCeEEEEchHHH
Confidence 89999999998531 45667777775 6899876 332111224445557999999987765
Q ss_pred hC
Q 017176 241 QN 242 (376)
Q Consensus 241 ~~ 242 (376)
.-
T Consensus 244 ra 245 (298)
T 3eoo_A 244 RA 245 (298)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00041 Score=62.69 Aligned_cols=67 Identities=15% Similarity=0.089 Sum_probs=51.7
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHc-CcCeeEEchHHhh
Q 017176 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQ 241 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~-Gad~VmiGRa~l~ 241 (376)
.+.|+|+|-+++... . ...+++++++..++++||++.||| +++.+.+.++. |+++|. |+++..
T Consensus 127 ~~~Gad~vk~Fpa~~--~------------gG~~~lk~l~~~~~~ipvvaiGGI-~~~N~~~~l~agga~~v~-gS~i~~ 190 (224)
T 1vhc_A 127 LEMGISAVKFFPAEA--S------------GGVKMIKALLGPYAQLQIMPTGGI-GLHNIRDYLAIPNIVACG-GSWFVE 190 (224)
T ss_dssp HHTTCCEEEETTTTT--T------------THHHHHHHHHTTTTTCEEEEBSSC-CTTTHHHHHTSTTBCCEE-ECGGGC
T ss_pred HHCCCCEEEEeeCcc--c------------cCHHHHHHHHhhCCCCeEEEECCc-CHHHHHHHHhcCCCEEEE-EchhcC
Confidence 368999999866211 0 015677788777778999999999 67899999996 999999 998877
Q ss_pred CCch
Q 017176 242 NPWY 245 (376)
Q Consensus 242 ~P~l 245 (376)
.+.+
T Consensus 191 ~~~i 194 (224)
T 1vhc_A 191 KKLI 194 (224)
T ss_dssp HHHH
T ss_pred cchh
Confidence 6654
|
| >1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0057 Score=55.12 Aligned_cols=136 Identities=14% Similarity=0.068 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHH
Q 017176 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLC 155 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~ 155 (376)
.+.-..-++. .+.|+|.||+.+ + +|.....+.+.+.+-+.++++.++- ..+|+-+-.... +.++ +
T Consensus 66 ~~~k~~E~~~-i~~GAdEID~Vi-----n------ig~~~~g~~~~v~~ei~~v~~a~~~-~~lKvIlEt~~L-t~ee-i 130 (226)
T 1vcv_A 66 TASRIALVSR-LAEVADEIDVVA-----P------IGLVKSRRWAEVRRDLISVVGAAGG-RVVKVITEEPYL-RDEE-R 130 (226)
T ss_dssp HHHHHHHHHH-HTTTCSEEEEEC-----C------HHHHHTTCHHHHHHHHHHHHHHTTT-SEEEEECCGGGC-CHHH-H
T ss_pred hHHHHHHHHH-HHCCCCEEEEec-----c------hhhhcCCCHHHHHHHHHHHHHHHcC-CCceEEEeccCC-CHHH-H
Confidence 3333334445 677999999964 1 3544556778888888888887642 255644322221 2233 3
Q ss_pred HHHHHHhhcCCccEEEEccCccc-----cCCC-CCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHc
Q 017176 156 DFIYKVSSLSPTRHFIIHSRKAL-----LNGI-SPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRK 228 (376)
Q Consensus 156 ~~i~~~~e~~Gvd~I~vh~r~~~-----~~g~-~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~ 228 (376)
....++..++|+|+|-.+.+... ..|. .++ .+-+.+.+.+.++.. .+++|-++|||+|.+++.++++.
T Consensus 131 ~~a~~ia~eaGADfVKTSTGf~~~~~~~~~~~~~gA-----t~~dv~lm~~~i~~~g~~v~vKaaGGirt~~~al~~i~a 205 (226)
T 1vcv_A 131 YTLYDIIAEAGAHFIKSSTGFAEEAYAARQGNPVHS-----TPERAAAIARYIKEKGYRLGVKMAGGIRTREQAKAIVDA 205 (226)
T ss_dssp HHHHHHHHHHTCSEEECCCSCCCHHHHHHTTCCSSC-----CHHHHHHHHHHHHHHTCCCEEEEESSCCSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEeCCCCCccccccccCCCCCC-----CHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHH
Confidence 33456677899999987744320 0010 111 011133444443333 36999999999999999999997
Q ss_pred ---CcC
Q 017176 229 ---GAH 231 (376)
Q Consensus 229 ---Gad 231 (376)
||+
T Consensus 206 ~~~Ga~ 211 (226)
T 1vcv_A 206 IGWGED 211 (226)
T ss_dssp HCSCSC
T ss_pred HHCCCC
Confidence 877
|
| >3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, isomeras structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0058 Score=59.47 Aligned_cols=129 Identities=11% Similarity=0.041 Sum_probs=90.2
Q ss_pred ecCCCHHH-HHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCC
Q 017176 71 IGGSNLDN-LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDD 147 (376)
Q Consensus 71 L~g~~~~~-~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~ 147 (376)
+...+++. +.++++.+++.||..+-+..|+. +++.-.+.+++||+.+ ++++.|...-+|+.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg~~----------------~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~ 207 (382)
T 3dgb_A 144 LASGDTAKDIAEAQKMLDLRRHRIFKLKIGAG----------------EVDRDLAHVIAIKKALGDSASVRVDVNQAWDE 207 (382)
T ss_dssp ECSSCHHHHHHHHHHHHHTTSCSEEEEECCSS----------------CHHHHHHHHHHHHHHHGGGSEEEEECTTCBCH
T ss_pred ecCCChHHHHHHHHHHHHhCCCCEEEEeeCCC----------------CHHHHHHHHHHHHHHcCCCCeEEEeCCCCCCH
Confidence 33345555 44555555657999998876531 3455677888888876 46888888878763
Q ss_pred CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH
Q 017176 148 HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR 227 (376)
Q Consensus 148 ~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~ 227 (376)
++.+++ .+.+++.|+.+|. . .+++.+++.++++.+.. ++||.+...+.+..++.++++
T Consensus 208 ----~~A~~~-~~~l~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~~~ 265 (382)
T 3dgb_A 208 ----AVALRA-CRILGGNGIDLIE----Q------------PISRNNRAGMVRLNASS-PAPIMADESIECVEDAFNLAR 265 (382)
T ss_dssp ----HHHHHH-HHHHHTTTCCCEE----C------------CBCTTCHHHHHHHHHHC-SSCEEESTTCSSHHHHHHHHH
T ss_pred ----HHHHHH-HHHHhhcCcCeee----C------------CCCccCHHHHHHHHHhC-CCCEEeCCCcCCHHHHHHHHH
Confidence 344443 4456778888775 1 11233477777887765 899999999999999999998
Q ss_pred -cCcCeeEEch
Q 017176 228 -KGAHHVMVGR 237 (376)
Q Consensus 228 -~Gad~VmiGR 237 (376)
..+|.|++--
T Consensus 266 ~~~~d~v~~k~ 276 (382)
T 3dgb_A 266 EGAASVFALKI 276 (382)
T ss_dssp HTCCSEEEECH
T ss_pred cCCCCEEEecc
Confidence 6799998843
|
| >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0067 Score=57.11 Aligned_cols=201 Identities=13% Similarity=0.062 Sum_probs=112.4
Q ss_pred CCChHHHHHHHHHhCCCcEEEe-cceeecc-cccccc---hh-------hhhhccCCCCCCEEEEe---cCCCHHHHHHH
Q 017176 18 DWTDNHYRTLARLISKHAWLYT-EMLAAET-IIYQQG---NL-------DRFLAFSPEQHPIVLQI---GGSNLDNLAKA 82 (376)
Q Consensus 18 ~~td~~~r~~~~~~Gg~gl~~t-e~v~~~~-~~~~~~---~~-------~~~~~~~~~~~p~~vQL---~g~~~~~~~~a 82 (376)
+.-|....+++.+.| +..+++ ....+.. +...+. .. ..+.+..+...|+++-+ +| +++...+.
T Consensus 31 ~a~D~~sA~l~e~aG-f~ai~vsG~~~a~s~~G~pD~~~vt~~em~~~~~~i~r~~~~~~PviaD~d~Gyg-~~~~v~~~ 108 (307)
T 3lye_A 31 GVYDGLSARTAMELG-FKSLYMTGAGTTASRLGQPDLAIAQLHDMRDNADMIANLDPFGPPLIADMDTGYG-GPIMVART 108 (307)
T ss_dssp EECSHHHHHHHHHTT-CSCEEECHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHTSSTTSCCEEEECTTCSS-SHHHHHHH
T ss_pred cCcCHHHHHHHHHcC-CCEEEeccHHHHHHhcCCCCCCCCCHHHHHHHHHhhhccCCCCCcEEEECCCCCC-CHHHHHHH
Confidence 566888888887776 776665 4322211 222211 01 11112222257888776 34 58888899
Q ss_pred HHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcc---cCccEEEEecCCCCCCccHHHHHHHHH
Q 017176 83 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN---TNVPVSVKCRIGVDDHDSYNQLCDFIY 159 (376)
Q Consensus 83 a~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~---~~~pv~vKiR~g~~~~~~~~~~~~~i~ 159 (376)
++.+.++|+.+|.|--.... | +.|+.++.-+-..+...+-|++.+++ .+.++.|--|....-...+++.++..
T Consensus 109 v~~l~~aGaagv~iEDq~~~-k--~cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa~~~~gldeAi~Ra- 184 (307)
T 3lye_A 109 VEHYIRSGVAGAHLEDQILT-K--RCGHLSGKKVVSRDEYLVRIRAAVATKRRLRSDFVLIARTDALQSLGYEECIERL- 184 (307)
T ss_dssp HHHHHHTTCCEEEECCBCCC-C----------CBCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECCHHHHCHHHHHHHH-
T ss_pred HHHHHHcCCeEEEEcCCCCC-c--ccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEEEEechhhhccCHHHHHHHH-
Confidence 99999999999999765432 2 23333443344555545555555443 25566666665211112355666653
Q ss_pred HHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEe---cCCCCHHHHHHHHHcCcCeeEEc
Q 017176 160 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN---GGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~n---GgI~s~~da~~~l~~Gad~VmiG 236 (376)
+.+.++|+|.|-+++.+. .+.+.++.+.++.+||.+| |+-...-...++-+.|+..|..+
T Consensus 185 ~ay~eAGAD~ifi~~~~~-----------------~~~~~~i~~~~~~~Pv~~n~~~~g~~p~~t~~eL~~lGv~~v~~~ 247 (307)
T 3lye_A 185 RAARDEGADVGLLEGFRS-----------------KEQAAAAVAALAPWPLLLNSVENGHSPLITVEEAKAMGFRIMIFS 247 (307)
T ss_dssp HHHHHTTCSEEEECCCSC-----------------HHHHHHHHHHHTTSCBEEEEETTSSSCCCCHHHHHHHTCSEEEEE
T ss_pred HHHHHCCCCEEEecCCCC-----------------HHHHHHHHHHccCCceeEEeecCCCCCCCCHHHHHHcCCeEEEEC
Confidence 455689999999997431 4556677766545888765 33211112344445799999887
Q ss_pred hHHhh
Q 017176 237 RAAYQ 241 (376)
Q Consensus 237 Ra~l~ 241 (376)
-.++.
T Consensus 248 ~~~~r 252 (307)
T 3lye_A 248 FATLA 252 (307)
T ss_dssp TTTHH
T ss_pred hHHHH
Confidence 76553
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.011 Score=58.63 Aligned_cols=147 Identities=16% Similarity=0.114 Sum_probs=98.9
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC
Q 017176 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 143 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~ 143 (376)
+-|+.-+=|.-++-+. .+ +..+|+|.|=|++.+- +.+.+.++++..++ .+..+.|-+
T Consensus 108 ~lPvLrKDFI~d~~Qi---~e-a~~~GAD~ILLi~a~l----------------~~~~l~~l~~~a~~-lgm~~LvEv-- 164 (452)
T 1pii_A 108 PQPILCKDFIIDPYQI---YL-ARYYQADACLLMLSVL----------------DDDQYRQLAAVAHS-LEMGVLTEV-- 164 (452)
T ss_dssp CSCEEEESCCCSHHHH---HH-HHHTTCSEEEEETTTC----------------CHHHHHHHHHHHHH-TTCEEEEEE--
T ss_pred CCCeEEEeccCCHHHH---HH-HHHcCCCEEEEEcccC----------------CHHHHHHHHHHHHH-cCCeEEEEe--
Confidence 4566666666555432 22 6678999999986421 13567777777665 466665532
Q ss_pred CCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCCCCHHHH
Q 017176 144 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEV 222 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI~s~~da 222 (376)
.+.+|+.. . .+.|++.|-+..|.- ..+ ..+++...++.+..+ ++++|+-|||.|++|+
T Consensus 165 -----h~~eE~~~----A-~~lga~iIGinnr~L--~t~---------~~dl~~~~~L~~~ip~~~~vIaEsGI~t~edv 223 (452)
T 1pii_A 165 -----SNEEEQER----A-IALGAKVVGINNRDL--RDL---------SIDLNRTRELAPKLGHNVTVISESGINTYAQV 223 (452)
T ss_dssp -----CSHHHHHH----H-HHTTCSEEEEESEET--TTT---------EECTHHHHHHHHHHCTTSEEEEESCCCCHHHH
T ss_pred -----CCHHHHHH----H-HHCCCCEEEEeCCCC--CCC---------CCCHHHHHHHHHhCCCCCeEEEECCCCCHHHH
Confidence 23445432 2 258999999988753 111 122555556655544 6899999999999999
Q ss_pred HHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhC
Q 017176 223 NAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256 (376)
Q Consensus 223 ~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 256 (376)
.++.+. +|+|.||.+++..++. ...+.....|
T Consensus 224 ~~~~~~-a~avLVGealmr~~d~-~~~~~~l~~~ 255 (452)
T 1pii_A 224 RELSHF-ANGFLIGSALMAHDDL-HAAVRRVLLG 255 (452)
T ss_dssp HHHTTT-CSEEEECHHHHTCSCH-HHHHHHHHHC
T ss_pred HHHHHh-CCEEEEcHHHcCCcCH-HHHHHHHHHH
Confidence 999999 9999999999998886 4444444333
|
| >4e8g_A Enolase, mandelate racemase/muconate lactonizing enzyme, N domain protein; putative racemase, nysgrc, structural genomics, PSI-biology; 2.00A {Paracoccus denitrificans} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.01 Score=57.92 Aligned_cols=131 Identities=11% Similarity=0.026 Sum_probs=94.6
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc---CccEEEEecC
Q 017176 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT---NVPVSVKCRI 143 (376)
Q Consensus 67 ~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~---~~pv~vKiR~ 143 (376)
+-..+...+++.+.+.++.+.+.||..+.+..|++ +++.-.+.+++||+.+ ++++.|...-
T Consensus 156 ~y~s~~~~~~e~~~~~a~~~~~~G~~~~KlKvg~~----------------~~~~d~~~v~avR~a~gg~~~~L~vDaN~ 219 (391)
T 4e8g_A 156 SYYATGIGQPDEIARIAAEKVAEGFPRLQIKIGGR----------------PVEIDIETVRKVWERIRGTGTRLAVDGNR 219 (391)
T ss_dssp CCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCSS----------------CHHHHHHHHHHHHHHHTTTTCEEEEECTT
T ss_pred EeEEcCCCCHHHHHHHHHHHHHcCCcEEEEcCCCC----------------CHHHHHHHHHHHHHHhCCCCCeEEEeCCC
Confidence 33445567899999999988889999999987652 3455567788887764 4678888777
Q ss_pred CCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHH
Q 017176 144 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 223 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~ 223 (376)
+|+. ++.+++ .+.+++.++ +|. + | ..+++..+++.+.. ++||.+.-.+.+..++.
T Consensus 220 ~w~~----~~A~~~-~~~L~~~~i-~iE-----e------P-------~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~ 274 (391)
T 4e8g_A 220 SLPS----RDALRL-SRECPEIPF-VLE-----Q------P-------CNTLEEIAAIRGRV-QHGIYLDESGEDLSTVI 274 (391)
T ss_dssp CCCH----HHHHHH-HHHCTTSCE-EEE-----S------C-------SSSHHHHHHHGGGC-CSCEEESTTCCSHHHHH
T ss_pred CCCH----HHHHHH-HHHHhhcCe-EEe-----c------C-------CccHHHHHHHHhhC-CCCEEeCCCCCCHHHHH
Confidence 7763 344443 345667777 663 0 0 11367777777664 89999999999999999
Q ss_pred HHHH-cCcCeeEEchH
Q 017176 224 AALR-KGAHHVMVGRA 238 (376)
Q Consensus 224 ~~l~-~Gad~VmiGRa 238 (376)
++++ ..+|.|++--+
T Consensus 275 ~~~~~~a~d~v~ik~~ 290 (391)
T 4e8g_A 275 RAAGQGLCDGFGMKLT 290 (391)
T ss_dssp HHHHTTCCSEEEEEHH
T ss_pred HHHHcCCCCEEEeCcc
Confidence 9998 56899988443
|
| >1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0022 Score=58.99 Aligned_cols=140 Identities=16% Similarity=0.199 Sum_probs=86.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC-ccEEEEecCCCCCCccHHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQ 153 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~-~pv~vKiR~g~~~~~~~~~ 153 (376)
..+.-+.-++.+.+.|+|.||+.+ + +|.-+..+.+.+.+-+.++++.++ .+..+|+-+-.....+ ++
T Consensus 83 ~~~~Kv~E~~~Av~~GAdEIDmVi-----n------ig~l~~g~~~~v~~ei~~v~~a~~~~g~~lKvIlEt~~L~d-~e 150 (260)
T 1p1x_A 83 DIDIALAETRAAIAYGADEVDVVF-----P------YRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKD-EA 150 (260)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEC-----C------HHHHHTTCCHHHHHHHHHHHHHHHHTTCEEEEECCHHHHCS-HH
T ss_pred cHHHHHHHHHHHHHcCCCEEEEec-----c------HHhhhCCCHHHHHHHHHHHHHHhcccCCeEEEEEecccCCc-HH
Confidence 344444455667778999999964 1 344444566778888888887663 2345665553211111 23
Q ss_pred HHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHH---HHHHHHhh---CCCCeEEEecCCCCHHHHHHHHH
Q 017176 154 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE---YYYALLRD---FPDLTFTLNGGINTVDEVNAALR 227 (376)
Q Consensus 154 ~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~---~v~~~~~~---~~~ipVi~nGgI~s~~da~~~l~ 227 (376)
.+....++..++|+|+|-.+.+... .| + ..+ .+.+.+++ -.+++|-++|||+|.+++.++++
T Consensus 151 ~i~~a~~ia~eaGADfVKTSTGf~~-~g---A--------t~e~v~lm~~~I~~~~~g~~v~VKaaGGIrt~~~al~~i~ 218 (260)
T 1p1x_A 151 LIRKASEISIKAGADFIKTSTGKVA-VN---A--------TPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLA 218 (260)
T ss_dssp HHHHHHHHHHHTTCSEEECCCSCSS-CC---C--------CHHHHHHHHHHHHHHTCTTTCEEECBSSCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEeCCCCCC-CC---C--------CHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHH
Confidence 3333456677899999987643210 11 1 133 44444442 24799999999999999999998
Q ss_pred cCcCeeEEchHHhhCCch
Q 017176 228 KGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 228 ~Gad~VmiGRa~l~~P~l 245 (376)
.|++ .|++.|+
T Consensus 219 aga~-------~lG~~w~ 229 (260)
T 1p1x_A 219 IADE-------LFGADWA 229 (260)
T ss_dssp HHHH-------HHCTTSC
T ss_pred hhhh-------hcccccc
Confidence 7665 5666665
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.021 Score=53.21 Aligned_cols=197 Identities=10% Similarity=0.061 Sum_probs=117.6
Q ss_pred CCChHHHHHHHHHhCCCcEEEecce--eecccccccc---hhhhhhc-----cCCCCCCEEEEe---cCCCHHHHHHHHH
Q 017176 18 DWTDNHYRTLARLISKHAWLYTEML--AAETIIYQQG---NLDRFLA-----FSPEQHPIVLQI---GGSNLDNLAKATE 84 (376)
Q Consensus 18 ~~td~~~r~~~~~~Gg~gl~~te~v--~~~~~~~~~~---~~~~~~~-----~~~~~~p~~vQL---~g~~~~~~~~aa~ 84 (376)
+.-|....+++.+.| +..+++.-. +...+.+.+. ....++. ....+.|+++-+ +| +++...+.++
T Consensus 27 ~a~D~~sA~i~e~aG-f~ai~vs~s~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~~~PviaD~d~Gyg-~~~~~~~~v~ 104 (287)
T 3b8i_A 27 SVFDPMSARIAADLG-FECGILGGSVASLQVLAAPDFALITLSEFVEQATRIGRVARLPVIADADHGYG-NALNVMRTVV 104 (287)
T ss_dssp ECCSHHHHHHHHHTT-CSCEEECHHHHHHHHHSCCSSSCSCHHHHHHHHHHHHTTCSSCEEEECTTCSS-SHHHHHHHHH
T ss_pred cCCCHHHHHHHHHcC-CCEEEeCcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECCCCCC-CHHHHHHHHH
Confidence 667888888887776 666665533 2111222221 1111111 123456777665 45 8888999999
Q ss_pred HHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHhh
Q 017176 85 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSS 163 (376)
Q Consensus 85 ~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e 163 (376)
++.++|+++|.|--+... |-+.+. .+. +-..+...+-|++++++- +.++.|--|..- ....++++++. ++.++
T Consensus 105 ~l~~aGa~gv~iED~~~p-Krcgh~--~gk-l~~~~e~~~~I~aa~~a~~~~~~~i~aRtda-a~~gl~~ai~R-a~ay~ 178 (287)
T 3b8i_A 105 ELERAGIAALTIEDTLLP-AQFGRK--STD-LICVEEGVGKIRAALEARVDPALTIIARTNA-ELIDVDAVIQR-TLAYQ 178 (287)
T ss_dssp HHHHHTCSEEEEECBCCS-CCTTTC--TTC-BCCHHHHHHHHHHHHHHCCSTTSEEEEEEET-TTSCHHHHHHH-HHHHH
T ss_pred HHHHhCCeEEEEcCCCCc-cccCCC--CCC-ccCHHHHHHHHHHHHHcCCCCCcEEEEechh-hhcCHHHHHHH-HHHHH
Confidence 998999999999877542 323333 344 567777777777776653 233333334321 12335666665 35667
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEe-cCCCCHHHHHHHHHcCcCeeEEchHHh
Q 017176 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN-GGINTVDEVNAALRKGAHHVMVGRAAY 240 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~n-GgI~s~~da~~~l~~Gad~VmiGRa~l 240 (376)
++|+|.|.+++-. ..+.+.++.+++ ++|++.. |+-...-+..++-+.|+..|..|-.++
T Consensus 179 eAGAd~i~~e~~~-----------------~~~~~~~i~~~~-~~P~ii~~~g~~~~~~~~eL~~lGv~~v~~~~~~~ 238 (287)
T 3b8i_A 179 EAGADGICLVGVR-----------------DFAHLEAIAEHL-HIPLMLVTYGNPQLRDDARLARLGVRVVVNGHAAY 238 (287)
T ss_dssp HTTCSEEEEECCC-----------------SHHHHHHHHTTC-CSCEEEECTTCGGGCCHHHHHHTTEEEEECCCHHH
T ss_pred HcCCCEEEecCCC-----------------CHHHHHHHHHhC-CCCEEEeCCCCCCCCCHHHHHHcCCcEEEEChHHH
Confidence 8999999999732 145567777765 7998832 322211233455557999888876554
|
| >3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0013 Score=58.53 Aligned_cols=72 Identities=13% Similarity=-0.066 Sum_probs=52.8
Q ss_pred CCccEEEEccCc--cccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017176 165 SPTRHFIIHSRK--ALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 165 ~Gvd~I~vh~r~--~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
.|+|+|.+.+-. ....+. -++..++.+.++.+.. +++||++.|||. ++.+.++++.|+++|.+++++..
T Consensus 106 ~GaDyv~~g~vf~t~sk~~~-------~~~~g~~~l~~~~~~~~~~iPviaiGGI~-~~nv~~~~~~Ga~gVav~s~i~~ 177 (210)
T 3ceu_A 106 HFYDYVFMSPIYDSISKVNY-------YSTYTAEELREAQKAKIIDSKVMALGGIN-EDNLLEIKDFGFGGAVVLGDLWN 177 (210)
T ss_dssp GGSSEEEECCCC----------------CCCCHHHHHHHHHTTCSSTTEEEESSCC-TTTHHHHHHTTCSEEEESHHHHT
T ss_pred hCCCEEEECCcCCCCCCCCC-------CCCCCHHHHHHHHHhcCCCCCEEEECCCC-HHHHHHHHHhCCCEEEEhHHhHc
Confidence 799999976531 111111 1234578888877653 589999999997 89999999999999999999986
Q ss_pred CCc
Q 017176 242 NPW 244 (376)
Q Consensus 242 ~P~ 244 (376)
.++
T Consensus 178 ~~d 180 (210)
T 3ceu_A 178 KFD 180 (210)
T ss_dssp TCC
T ss_pred CCC
Confidence 544
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.01 Score=56.22 Aligned_cols=195 Identities=9% Similarity=-0.022 Sum_probs=116.3
Q ss_pred CCChHHHHHHHHHhCCCcEEEecce--eecccccccc---hhhh-------hhccCCCCCCEEEEe---cCCCHHHHHHH
Q 017176 18 DWTDNHYRTLARLISKHAWLYTEML--AAETIIYQQG---NLDR-------FLAFSPEQHPIVLQI---GGSNLDNLAKA 82 (376)
Q Consensus 18 ~~td~~~r~~~~~~Gg~gl~~te~v--~~~~~~~~~~---~~~~-------~~~~~~~~~p~~vQL---~g~~~~~~~~a 82 (376)
+.-|....+++.+.| +..+++.-. +...+.+.+. .... +.+.. .+.|+++-+ +| +++...+.
T Consensus 45 ~ayD~~sA~i~e~aG-fdai~vs~~~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~-~~~PviaD~d~Gyg-~~~~v~~t 121 (318)
T 1zlp_A 45 GVQDALSAAVVEKTG-FHAAFVSGYSVSAAMLGLPDFGLLTTTEVVEATRRITAAA-PNLCVVVDGDTGGG-GPLNVQRF 121 (318)
T ss_dssp EECSHHHHHHHHHTT-CSEEEECHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHHHS-SSSEEEEECTTCSS-SHHHHHHH
T ss_pred cCCCHHHHHHHHHcC-CCEEEECcHHHhhHhcCCCCCCCCCHHHHHHHHHHHHhhc-cCCCEEEeCCCCCC-CHHHHHHH
Confidence 566788888877776 777776642 2111222221 1111 11111 257787765 45 78889999
Q ss_pred HHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHH
Q 017176 83 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKV 161 (376)
Q Consensus 83 a~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~ 161 (376)
++++.++|+++|.|--+... +.+ |+.|+.-+-..+...+-|++++++. +.++.|--|..-.....++++++. ++.
T Consensus 122 v~~l~~aGaagv~iED~~~~-k~c--gH~~gk~L~p~~e~~~rI~Aa~~A~~~~~~~I~ARtda~a~~gl~~ai~R-a~A 197 (318)
T 1zlp_A 122 IRELISAGAKGVFLEDQVWP-KKC--GHMRGKAVVPAEEHALKIAAAREAIGDSDFFLVARTDARAPHGLEEGIRR-ANL 197 (318)
T ss_dssp HHHHHHTTCCEEEEECBCSS-CCC--SSSSCCCBCCHHHHHHHHHHHHHHHTTSCCEEEEEECTHHHHHHHHHHHH-HHH
T ss_pred HHHHHHcCCcEEEECCCCCC-ccc--cCCCCCccCCHHHHHHHHHHHHHhcccCCcEEEEeeHHhhhcCHHHHHHH-HHH
Confidence 99999999999999876542 333 3334443344555555556655543 334444445411101123556654 346
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEe---c---CCCCHHHHHHHHHcCcCeeEE
Q 017176 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN---G---GINTVDEVNAALRKGAHHVMV 235 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~n---G---gI~s~~da~~~l~~Gad~Vmi 235 (376)
++++|+|.|.+++-. ..+.+.++.+++ ++|+.+| | ...+ ..++-+.|+..|.+
T Consensus 198 y~eAGAd~i~~e~~~-----------------~~e~~~~i~~~l-~~P~lan~~~~g~~~~~~---~~eL~~lGv~~v~~ 256 (318)
T 1zlp_A 198 YKEAGADATFVEAPA-----------------NVDELKEVSAKT-KGLRIANMIEGGKTPLHT---PEEFKEMGFHLIAH 256 (318)
T ss_dssp HHHTTCSEEEECCCC-----------------SHHHHHHHHHHS-CSEEEEEECTTSSSCCCC---HHHHHHHTCCEEEE
T ss_pred HHHcCCCEEEEcCCC-----------------CHHHHHHHHHhc-CCCEEEEeccCCCCCCCC---HHHHHHcCCeEEEE
Confidence 678999999998742 145667777776 7999766 2 2334 34445579999999
Q ss_pred chHHh
Q 017176 236 GRAAY 240 (376)
Q Consensus 236 GRa~l 240 (376)
|-.++
T Consensus 257 ~~~~~ 261 (318)
T 1zlp_A 257 SLTAV 261 (318)
T ss_dssp CSHHH
T ss_pred chHHH
Confidence 87765
|
| >3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.019 Score=55.74 Aligned_cols=131 Identities=7% Similarity=-0.028 Sum_probs=87.5
Q ss_pred EecCCCHHHHHH-HHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC--ccEEEEecCCCC
Q 017176 70 QIGGSNLDNLAK-ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVD 146 (376)
Q Consensus 70 QL~g~~~~~~~~-aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~--~pv~vKiR~g~~ 146 (376)
.+...+++...+ +++.+++.||..+-+..|+ .+++.-.+.+++||+.++ +++.|...-+|+
T Consensus 142 t~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg~----------------~~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~ 205 (381)
T 3fcp_A 142 TLASGDTAKDIAEGEKLLAEGRHRAFKLKIGA----------------RELATDLRHTRAIVEALGDRASIRVDVNQAWD 205 (381)
T ss_dssp EECSSCHHHHHHHHHHHTC----CEEEEECCS----------------SCHHHHHHHHHHHHHHTCTTCEEEEECTTCBC
T ss_pred EecCCChHHHHHHHHHHHHhCCCCEEEEecCC----------------CChHHHHHHHHHHHHHcCCCCeEEEECCCCCC
Confidence 344446665544 4444444699999887653 135566778899998874 678888777776
Q ss_pred CCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHH
Q 017176 147 DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL 226 (376)
Q Consensus 147 ~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l 226 (376)
. ++.+++ .+.+++.|+.+|. . .+++.+++.++++.+.. ++||.+...+.+..++.+++
T Consensus 206 ~----~~A~~~-~~~l~~~~i~~iE----e------------P~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~~ 263 (381)
T 3fcp_A 206 A----ATGAKG-CRELAAMGVDLIE----Q------------PVSAHDNAALVRLSQQI-ETAILADEAVATAYDGYQLA 263 (381)
T ss_dssp H----HHHHHH-HHHHHHTTCSEEE----C------------CBCTTCHHHHHHHHHHS-SSEEEESTTCCSHHHHHHHH
T ss_pred H----HHHHHH-HHHHhhcCcccee----C------------CCCcccHHHHHHHHHhC-CCCEEECCCcCCHHHHHHHH
Confidence 3 344443 3456678888874 1 12233477777887765 89999999999999999999
Q ss_pred H-cCcCeeEEchH
Q 017176 227 R-KGAHHVMVGRA 238 (376)
Q Consensus 227 ~-~Gad~VmiGRa 238 (376)
+ ..+|.|++--.
T Consensus 264 ~~~a~d~v~~k~~ 276 (381)
T 3fcp_A 264 QQGFTGAYALKIA 276 (381)
T ss_dssp HTTCCSEEEECHH
T ss_pred HcCCCCEEEeccc
Confidence 8 67999988433
|
| >4a35_A Mitochondrial enolase superfamily member 1; isomerase; 1.74A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.017 Score=57.26 Aligned_cols=125 Identities=9% Similarity=0.018 Sum_probs=91.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCcc
Q 017176 73 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDS 150 (376)
Q Consensus 73 g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~ 150 (376)
+.+++++++.++.+.+.||..+-++.|+ +++.-.+.+++||+.+ ++++.|...-+|+.
T Consensus 199 ~~~~e~~~~~a~~~~~~Gf~~~KlKvG~-----------------~~~~d~~~v~avR~a~G~~~~l~vDaN~~~~~--- 258 (441)
T 4a35_A 199 GYSDDTLKQLCAQALKDGWTRFKVKVGA-----------------DLQDDMRRCQIIRDMIGPEKTLMMDANQRWDV--- 258 (441)
T ss_dssp TCCHHHHHHHHHHHHHTTCCEEEEECSS-----------------CHHHHHHHHHHHHHHHCTTSEEEEECTTCCCH---
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEcCCC-----------------CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCH---
Confidence 5589999999998888999999987653 3455667788888876 56788887777753
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhh--CCCCeEEEecCCCCHHHHHHHHH-
Q 017176 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD--FPDLTFTLNGGINTVDEVNAALR- 227 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~--~~~ipVi~nGgI~s~~da~~~l~- 227 (376)
.+.+++ .+.+++.++.+|. . .+++-+++..+++.+. ..++||.+.-.+.+..++.++++
T Consensus 259 -~~A~~~-~~~L~~~~~~~iE----e------------P~~~~d~~~~~~l~~~l~~~~iPIa~gE~~~~~~~~~~~l~~ 320 (441)
T 4a35_A 259 -PEAVEW-MSKLAKFKPLWIE----E------------PTSPDDILGHATISKALVPLGIGIATGEQCHNRVIFKQLLQA 320 (441)
T ss_dssp -HHHHHH-HHHHGGGCCSEEE----C------------CSCTTCHHHHHHHHHHHGGGTCEEEECTTCCSHHHHHHHHHT
T ss_pred -HHHHHH-HHhhcccCccEEe----C------------CCCcccHHHHHHHHHhccCCCCCEEeCCccccHHHHHHHHHc
Confidence 344443 4456778887774 1 1122336666666654 13799999999999999999998
Q ss_pred cCcCeeEE
Q 017176 228 KGAHHVMV 235 (376)
Q Consensus 228 ~Gad~Vmi 235 (376)
..+|.|++
T Consensus 321 ~a~div~~ 328 (441)
T 4a35_A 321 KALQFLQI 328 (441)
T ss_dssp TCCSEECC
T ss_pred CCCCEEEE
Confidence 56898877
|
| >4hnl_A Mandelate racemase/muconate lactonizing enzyme; dehydratase, magnesium binding, enzyme function initiative,; 1.48A {Enterococcus gallinarum EG2} PDB: 3s47_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0092 Score=58.77 Aligned_cols=149 Identities=13% Similarity=0.058 Sum_probs=100.3
Q ss_pred CCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCcccc----CCCCcccccc---CCHHHHHHHHHHHhccc--Cc
Q 017176 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVA----GHGCFGVSLM---LDPKFVGEAMSVIAANT--NV 135 (376)
Q Consensus 65 ~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~----r~g~yG~~l~---~~~~~~~eiv~~v~~~~--~~ 135 (376)
-|+...+.+.+++++.+.++.+.+.||..+-+..|.+..+.. ....+.+... .+++...+.++++|+.+ ++
T Consensus 143 v~~y~~~~~~~~~~~~~~a~~~~~~G~~~~K~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~v~avR~a~G~~~ 222 (421)
T 4hnl_A 143 IPAYTHAVADNLDDLYHEIDRFLAAGYRYIRCQLGFYGGNPSQLQTPEEPISGSYFDQTDYMETTLKMFAAIKEKYGNQF 222 (421)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEESCCCCCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred cceecccCCCCHHHHHHHHHHHHHhhHHHHhhccccccCCchhccccccccccccccchhHHHHHHHHHHHHHHHhCCCc
Confidence 355555666789999999999999999999999886432111 1111122222 23456677888888887 45
Q ss_pred cEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecC
Q 017176 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 215 (376)
Q Consensus 136 pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGg 215 (376)
.+.+-..-+|+ .++.+++ .+.+++.++.+|. . .+++-+++.++++++.. ++||.+.-.
T Consensus 223 ~l~vDan~~~~----~~~A~~~-~~~l~~~~i~~iE----e------------P~~~~d~~~~~~l~~~~-~ipIa~dE~ 280 (421)
T 4hnl_A 223 QMLHDVHERLH----PNQAIQF-AKAAEPYQLFFLE----D------------ILPPDQSHWLTQLRSQS-ATPIATGEL 280 (421)
T ss_dssp EEEEECTTCSC----HHHHHHH-HHHHGGGCCSEEE----C------------CSCGGGGGGHHHHHTTC-CCCEEECTT
T ss_pred eEeccccccCC----HHHHHHH-HHHhhhhhhcccc----c------------CCcccchHHHHHHHhcC-CCCeecCcc
Confidence 66666555554 3454554 4556788888765 1 12233456667777654 899999999
Q ss_pred CCCHHHHHHHHH-cCcCeeEE
Q 017176 216 INTVDEVNAALR-KGAHHVMV 235 (376)
Q Consensus 216 I~s~~da~~~l~-~Gad~Vmi 235 (376)
+.+..++.++++ ..+|.|++
T Consensus 281 ~~~~~~~~~~i~~~a~d~v~~ 301 (421)
T 4hnl_A 281 FNNPMEWQELVKNRQIDFMRA 301 (421)
T ss_dssp CCSGGGTHHHHHTTCCSEECC
T ss_pred eehhHHHHHHHhcCCceEEEe
Confidence 999999999998 55888875
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.032 Score=52.10 Aligned_cols=195 Identities=13% Similarity=0.056 Sum_probs=114.5
Q ss_pred CCChHHHHHHHHHhCCCcEEEecc--eeecccccccc---hhhhhhc-----cCCCCCCEEEEe---cCCCHHHHHHHHH
Q 017176 18 DWTDNHYRTLARLISKHAWLYTEM--LAAETIIYQQG---NLDRFLA-----FSPEQHPIVLQI---GGSNLDNLAKATE 84 (376)
Q Consensus 18 ~~td~~~r~~~~~~Gg~gl~~te~--v~~~~~~~~~~---~~~~~~~-----~~~~~~p~~vQL---~g~~~~~~~~aa~ 84 (376)
+.-|.....++.+.| +..+++.- ++.. +.+.+. ....++. ....+.|+++-+ +| +++...+.++
T Consensus 21 ~a~D~~sA~~~~~aG-~~ai~vs~~~~a~~-~G~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg-~~~~~~~~v~ 97 (290)
T 2hjp_A 21 AAHNPLVAKLAEQAG-FGGIWGSGFELSAS-YAVPDANILSMSTHLEMMRAIASTVSIPLIADIDTGFG-NAVNVHYVVP 97 (290)
T ss_dssp ECSSHHHHHHHHHHT-CSEEEECHHHHHHH-TTSCTTTCSCHHHHHHHHHHHHTTCSSCEEEECTTTTS-SHHHHHHHHH
T ss_pred cCCCHHHHHHHHHcC-CCEEEEChHHHHHh-CCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECCCCCC-CHHHHHHHHH
Confidence 666888888887776 78887763 2222 322221 1111111 123457777665 35 8888999999
Q ss_pred HHHHCCCCEEEecCCCCCccccCCCCcc--ccccCCHHHHHHHHHHHhccc---CccEEEEecCCCCCCccHHHHHHHHH
Q 017176 85 LANAYNYDEINLNCGCPSPKVAGHGCFG--VSLMLDPKFVGEAMSVIAANT---NVPVSVKCRIGVDDHDSYNQLCDFIY 159 (376)
Q Consensus 85 ~~~~~G~d~IeiN~gcP~~~v~r~g~yG--~~l~~~~~~~~eiv~~v~~~~---~~pv~vKiR~g~~~~~~~~~~~~~i~ 159 (376)
++.++|+++|.|--+... ++ .|+.| +.-+-..+...+-|++++++. ++-|..|+-.-+. ...++++++. +
T Consensus 98 ~l~~aGa~gv~iED~~~~-k~--cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~~~~~i~aRtda~~a-~~g~~~ai~R-a 172 (290)
T 2hjp_A 98 QYEAAGASAIVMEDKTFP-KD--TSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIA-GLGQQEAVRR-G 172 (290)
T ss_dssp HHHHHTCSEEEEECBCSS-CC--C-------CCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTTTT-TCCHHHHHHH-H
T ss_pred HHHHhCCeEEEEcCCCCC-cc--ccccccCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHhhc-cccHHHHHHH-H
Confidence 998999999999876532 22 34444 333444555555555555542 3344444322111 1235666665 3
Q ss_pred HHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCC--CeEEEec---CCCCHHHHHHHHHcC-cCee
Q 017176 160 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD--LTFTLNG---GINTVDEVNAALRKG-AHHV 233 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~--ipVi~nG---gI~s~~da~~~l~~G-ad~V 233 (376)
+.++++|+|.|.++++... .+.+.++.+++ + +|+++|- ...+ ..++-+.| +..|
T Consensus 173 ~ay~eAGAd~i~~e~~~~~----------------~~~~~~i~~~~-~~~vP~i~n~~~~~~~~---~~eL~~lG~v~~v 232 (290)
T 2hjp_A 173 QAYEEAGADAILIHSRQKT----------------PDEILAFVKSW-PGKVPLVLVPTAYPQLT---EADIAALSKVGIV 232 (290)
T ss_dssp HHHHHTTCSEEEECCCCSS----------------SHHHHHHHHHC-CCSSCEEECGGGCTTSC---HHHHHTCTTEEEE
T ss_pred HHHHHcCCcEEEeCCCCCC----------------HHHHHHHHHHc-CCCCCEEEeccCCCCCC---HHHHHhcCCeeEE
Confidence 4667899999999985320 24456777766 5 9999872 2333 34455579 9999
Q ss_pred EEchHHh
Q 017176 234 MVGRAAY 240 (376)
Q Consensus 234 miGRa~l 240 (376)
.+|-.++
T Consensus 233 ~~~~~~~ 239 (290)
T 2hjp_A 233 IYGNHAI 239 (290)
T ss_dssp EECSHHH
T ss_pred EechHHH
Confidence 9987765
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0054 Score=55.31 Aligned_cols=49 Identities=18% Similarity=0.246 Sum_probs=41.3
Q ss_pred HHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHhhCCch
Q 017176 195 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 195 ~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~l 245 (376)
.++++++...++++||++.||| +++.+.+.++ .|+++|. |+++...+++
T Consensus 154 ~~~lk~i~~~~~~ipvvaiGGI-~~~N~~~~l~~~Ga~~v~-gSai~~~~~i 203 (225)
T 1mxs_A 154 VAAIKAFGGPFGDIRFCPTGGV-NPANVRNYMALPNVMCVG-TTWMLDSSWI 203 (225)
T ss_dssp HHHHHHHHTTTTTCEEEEBSSC-CTTTHHHHHHSTTBCCEE-ECTTSCHHHH
T ss_pred HHHHHHHHhhCCCCeEEEECCC-CHHHHHHHHhccCCEEEE-EchhcCchhh
Confidence 4667777777779999999999 6789999999 8999999 9988766654
|
| >3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.033 Score=53.74 Aligned_cols=131 Identities=13% Similarity=0.139 Sum_probs=91.8
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCC
Q 017176 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGV 145 (376)
Q Consensus 67 ~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~ 145 (376)
+...+...+++.+.+.++.+.+.||..+-+..|.. +++.-.+.+++||+.+ +.++.+-..-+|
T Consensus 135 ~~~~~~~~~~e~~~~~a~~~~~~G~~~iK~Kvg~~----------------~~~~d~~~v~avr~~~~~~~l~vDaN~~~ 198 (365)
T 3ik4_A 135 TDMTITAGDEVHAAASAKAILARGIKSIKVKTAGV----------------DVAYDLARLRAIHQAAPTAPLIVDGNCGY 198 (365)
T ss_dssp BCEEECCSCHHHHHHHHHHHHHTTCCCEEEECCSS----------------CHHHHHHHHHHHHHHSSSCCEEEECTTCC
T ss_pred eeEEecCCCHHHHHHHHHHHHHcCCCEEEEEeCCC----------------CHHHHHHHHHHHHHhCCCCeEEEECCCCC
Confidence 33455567899999998888888999998865421 3566677888888876 345555555555
Q ss_pred CCCccHHHHHHHHHHHh--hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHH
Q 017176 146 DDHDSYNQLCDFIYKVS--SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 223 (376)
Q Consensus 146 ~~~~~~~~~~~~i~~~~--e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~ 223 (376)
+ .++.++++ +.+ ++.++.+|. . .+++-+++.++++.+.. ++||.+.-.+.+.+++.
T Consensus 199 ~----~~~A~~~~-~~L~~~~~~i~~iE----e------------P~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~ 256 (365)
T 3ik4_A 199 D----VERALAFC-AACKAESIPMVLFE----Q------------PLPREDWAGMAQVTAQS-GFAVAADESARSAHDVL 256 (365)
T ss_dssp C----HHHHHHHH-HHHHHTTCCEEEEE----C------------CSCTTCHHHHHHHHHHS-SSCEEESTTCSSHHHHH
T ss_pred C----HHHHHHHH-HHHhhCCCCceEEE----C------------CCCcccHHHHHHHHhhC-CCCEEECCCCCCHHHHH
Confidence 4 34444443 345 566777665 1 12223477777887765 89999999999999999
Q ss_pred HHHH-cCcCeeEE
Q 017176 224 AALR-KGAHHVMV 235 (376)
Q Consensus 224 ~~l~-~Gad~Vmi 235 (376)
++++ ..+|.|++
T Consensus 257 ~~i~~~a~d~v~i 269 (365)
T 3ik4_A 257 RIAREGTASVINI 269 (365)
T ss_dssp HHHHHTCCSEEEE
T ss_pred HHHHhCCCCEEEE
Confidence 9998 66899887
|
| >1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0074 Score=56.63 Aligned_cols=109 Identities=13% Similarity=0.122 Sum_probs=70.5
Q ss_pred cCCCCccccccC--CHHH---HHHHHHHHhcccCc-cEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCcccc
Q 017176 106 AGHGCFGVSLML--DPKF---VGEAMSVIAANTNV-PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL 179 (376)
Q Consensus 106 ~r~g~yG~~l~~--~~~~---~~eiv~~v~~~~~~-pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~ 179 (376)
+|.+.+...+.+ +... +.+-++++++..+. ++.|-+ ++++++.+. .++|+|+|-++..+
T Consensus 174 hr~~l~d~vlikdnhi~~~Gti~~ai~~~r~~~~~~kI~vev-------~tlee~~eA-----~~aGaD~I~ld~~~--- 238 (296)
T 1qap_A 174 HRLGLTDAFLIKENHIIASGSVRQAVEKAFWLHPDVPVEVEV-------ENLDELDDA-----LKAGADIIMLDNFN--- 238 (296)
T ss_dssp CCSSSSSCEEECHHHHHHHSSHHHHHHHHHHHSTTSCEEEEE-------SSHHHHHHH-----HHTTCSEEEESSCC---
T ss_pred hccccccEEEEEcCCeeccCCHHHHHHHHHHhCCCCcEEEEe-------CCHHHHHHH-----HHcCCCEEEECCCC---
Confidence 344444444544 3344 35556666665532 444422 334454332 25899999987522
Q ss_pred CCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 180 NGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 180 ~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
.+.+.++++.. .+++|.++||| |.+.+.++.++|+|++.+|+....-|++
T Consensus 239 ---------------~e~l~~~v~~~~~~~~I~ASGGI-t~~~i~~~a~~GvD~isvGsli~~a~~~ 289 (296)
T 1qap_A 239 ---------------TDQMREAVKRVNGQARLEVSGNV-TAETLREFAETGVDFISVGALTKHVRAL 289 (296)
T ss_dssp ---------------HHHHHHHHHTTCTTCCEEECCCS-CHHHHHHHHHTTCSEEECSHHHHEEECC
T ss_pred ---------------HHHHHHHHHHhCCCCeEEEECCC-CHHHHHHHHHcCCCEEEEeHHHcCCCCC
Confidence 34555555543 26999999999 9999999999999999999976656654
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0022 Score=57.37 Aligned_cols=140 Identities=16% Similarity=0.125 Sum_probs=81.6
Q ss_pred CCCEEE--EecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe
Q 017176 64 QHPIVL--QIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 141 (376)
Q Consensus 64 ~~p~~v--QL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 141 (376)
+.|+++ -+. ..|+.+. +.+.++|+|+|-+|...+ .+.+.++++.+++. +.+..+.
T Consensus 59 ~~~i~ld~~l~-d~p~~~~---~~~~~aGad~i~vh~~~~-----------------~~~~~~~~~~~~~~-g~~~~~d- 115 (218)
T 3jr2_A 59 NHILVCDMKTT-DGGAILS---RMAFEAGADWITVSAAAH-----------------IATIAACKKVADEL-NGEIQIE- 115 (218)
T ss_dssp TSEEEEEEEEC-SCHHHHH---HHHHHHTCSEEEEETTSC-----------------HHHHHHHHHHHHHH-TCEEEEE-
T ss_pred CCcEEEEEeec-ccHHHHH---HHHHhcCCCEEEEecCCC-----------------HHHHHHHHHHHHHh-CCcccee-
Confidence 345543 343 4466544 566778999999985321 12345666666543 4443331
Q ss_pred cCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCc-cccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHH
Q 017176 142 RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK-ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVD 220 (376)
Q Consensus 142 R~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~-~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~ 220 (376)
-++.. +.++..+ + .+.|+|++.++... ....|.. ..+..++.++++.. +++||++.||| +++
T Consensus 116 ~l~~~---T~~~~~~----~-~~~g~d~v~~~~~~~~~~~g~~------~~~~~l~~i~~~~~--~~~pi~v~GGI-~~~ 178 (218)
T 3jr2_A 116 IYGNW---TMQDAKA----W-VDLGITQAIYHRSRDAELAGIG------WTTDDLDKMRQLSA--LGIELSITGGI-VPE 178 (218)
T ss_dssp CCSSC---CHHHHHH----H-HHTTCCEEEEECCHHHHHHTCC------SCHHHHHHHHHHHH--TTCEEEEESSC-CGG
T ss_pred eeecC---CHHHHHH----H-HHcCccceeeeeccccccCCCc------CCHHHHHHHHHHhC--CCCCEEEECCC-CHH
Confidence 23332 2233322 2 24699998775332 2111210 01112344545443 48999999999 699
Q ss_pred HHHHHHHcCcCeeEEchHHhhCC
Q 017176 221 EVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 221 da~~~l~~Gad~VmiGRa~l~~P 243 (376)
.+.++++.|||+|.+||++...+
T Consensus 179 ~~~~~~~aGAd~vvvGsaI~~a~ 201 (218)
T 3jr2_A 179 DIYLFEGIKTKTFIAGRALAGAE 201 (218)
T ss_dssp GGGGGTTSCEEEEEESGGGSHHH
T ss_pred HHHHHHHcCCCEEEEchhhcCCC
Confidence 99999999999999999987543
|
| >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.018 Score=54.12 Aligned_cols=200 Identities=14% Similarity=0.102 Sum_probs=111.9
Q ss_pred CCChHHHHHHHHHhCCCcEEEe-cceeecc-cccccc---hhhhhh----ccC--CCCCCEEEEe---cCCCHHHHHHHH
Q 017176 18 DWTDNHYRTLARLISKHAWLYT-EMLAAET-IIYQQG---NLDRFL----AFS--PEQHPIVLQI---GGSNLDNLAKAT 83 (376)
Q Consensus 18 ~~td~~~r~~~~~~Gg~gl~~t-e~v~~~~-~~~~~~---~~~~~~----~~~--~~~~p~~vQL---~g~~~~~~~~aa 83 (376)
+.-|....+++.+.| +..+++ ....+.. +...+. ....++ .+. ..+.|+++-+ +| +++...+.+
T Consensus 24 ~a~D~~sA~l~e~aG-f~ai~vsG~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~~~PviaD~d~Gyg-~~~~v~~tv 101 (302)
T 3fa4_A 24 GVYDGLSARVALSAG-FDALYMTGAGTAASVHGQADLGICTLNDMRANAEMISNISPSTPVIADADTGYG-GPIMVARTT 101 (302)
T ss_dssp EECSHHHHHHHHTTT-CSCEEECHHHHHHHHHSCCSSSCCCHHHHHHHHHHHHTTSTTSCEEEECTTTTS-SHHHHHHHH
T ss_pred cCcCHHHHHHHHHcC-CCEEEeCcHHHHHHHcCCCCCCcCCHHHHHHHHHHHHhhccCCCEEEECCCCCC-CHHHHHHHH
Confidence 566888888877776 676665 4222111 222211 011111 111 1367888776 34 588888999
Q ss_pred HHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc---CccEEEEecCCCCCCccHHHHHHHHHH
Q 017176 84 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT---NVPVSVKCRIGVDDHDSYNQLCDFIYK 160 (376)
Q Consensus 84 ~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~---~~pv~vKiR~g~~~~~~~~~~~~~i~~ 160 (376)
+.+.++|+.+|.|--.... | |.|+.++.-+-..+...+=|++.+++. +.++.|=-|...-....+++.++.+ +
T Consensus 102 ~~l~~aGaagv~iEDq~~~-K--rcgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa~~~~gldeAi~Ra-~ 177 (302)
T 3fa4_A 102 EQYSRSGVAAFHIEDQVQT-K--RCGHLAGKILVDTDTYVTRIRAAVQARQRIGSDIVVIARTDSLQTHGYEESVARL-R 177 (302)
T ss_dssp HHHHHTTCCEEEECSBCCC----------CCCBCCHHHHHHHHHHHHHHHHHHTCCCEEEEEECCHHHHCHHHHHHHH-H
T ss_pred HHHHHcCCcEEEECCCCCC-c--ccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCEEEEEEecccccCCHHHHHHHH-H
Confidence 9999999999999765432 2 223333333334554444455554432 4555555555211112356666653 4
Q ss_pred HhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEe---cCCCCHHHHHHHHHcCcCeeEEch
Q 017176 161 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN---GGINTVDEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 161 ~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~n---GgI~s~~da~~~l~~Gad~VmiGR 237 (376)
.+.++|+|.|-+++-+. .+.+.++.+.+.++|+.+| |+-...-+..++-+.|+..|..+-
T Consensus 178 ay~eAGAD~ifi~g~~~-----------------~~ei~~~~~~~~~~Pl~~n~~~~g~~p~~~~~eL~~lGv~~v~~~~ 240 (302)
T 3fa4_A 178 AARDAGADVGFLEGITS-----------------REMARQVIQDLAGWPLLLNMVEHGATPSISAAEAKEMGFRIIIFPF 240 (302)
T ss_dssp HHHTTTCSEEEETTCCC-----------------HHHHHHHHHHTTTSCEEEECCTTSSSCCCCHHHHHHHTCSEEEETT
T ss_pred HHHHcCCCEEeecCCCC-----------------HHHHHHHHHHhcCCceeEEEecCCCCCCCCHHHHHHcCCCEEEEch
Confidence 55689999999998431 4556777777656888776 332111123444456999998876
Q ss_pred HHh
Q 017176 238 AAY 240 (376)
Q Consensus 238 a~l 240 (376)
.++
T Consensus 241 ~~~ 243 (302)
T 3fa4_A 241 AAL 243 (302)
T ss_dssp TTH
T ss_pred HHH
Confidence 654
|
| >3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.013 Score=53.23 Aligned_cols=134 Identities=10% Similarity=0.058 Sum_probs=83.2
Q ss_pred EEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--------CccEEE
Q 017176 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--------NVPVSV 139 (376)
Q Consensus 68 ~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--------~~pv~v 139 (376)
-+-|..++|+.|.+. +.++|+|+|-+|..... + +.++++.+++.. +..+.+
T Consensus 73 DvhLMv~~p~~~i~~---~~~aGAd~itvH~ea~~---------------~---~~~~i~~i~~~~~~~~~~~~g~~~gv 131 (237)
T 3cu2_A 73 DVHLMVRNQLEVAKA---VVANGANLVTLQLEQYH---------------D---FALTIEWLAKQKTTYANQVYPVLIGA 131 (237)
T ss_dssp EEEEECSCHHHHHHH---HHHTTCSEEEEETTCTT---------------S---HHHHHHHHTTCEEEETTEEEECEEEE
T ss_pred CeEEEEECHHHHHHH---HHHcCCCEEEEecCCcc---------------c---HHHHHHHHHhcccccccccCCceEEE
Confidence 677778899766554 45789999999864321 1 345667776541 334444
Q ss_pred EecCCCCCCccHHHHHHHHHHHhhcCCccEEEE---ccCccccCCCCCCCCCCCCcccHHHHHHHHhhC----CCCeEEE
Q 017176 140 KCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII---HSRKALLNGISPAENRTIPPLKYEYYYALLRDF----PDLTFTL 212 (376)
Q Consensus 140 KiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~v---h~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~----~~ipVi~ 212 (376)
-+.++... +.+ ..++ .++|+|.+ |++...+. ..+...+.++++++.. .++||.+
T Consensus 132 ~l~p~Tp~-~~l-------~~~l--~~~D~vlvMsv~pgfggq~---------f~~~~l~ki~~lr~~~~~~~~~~~I~v 192 (237)
T 3cu2_A 132 CLCPETPI-SEL-------EPYL--DQIDVIQLLTLDPRNGTKY---------PSELILDRVIQVEKRLGNRRVEKLINI 192 (237)
T ss_dssp EECTTSCG-GGG-------TTTT--TTCSEEEEESEETTTTEEC---------CHHHHHHHHHHHHHHHGGGGGGCEEEE
T ss_pred EEeCCChH-HHH-------HHHh--hcCceeeeeeeccCcCCee---------cChhHHHHHHHHHHHHHhcCCCceEEE
Confidence 44332211 111 1122 47998854 66543221 1122244444444332 2589999
Q ss_pred ecCCCCHHHHHHHHH--cCcCeeEEchHHhhC
Q 017176 213 NGGINTVDEVNAALR--KGAHHVMVGRAAYQN 242 (376)
Q Consensus 213 nGgI~s~~da~~~l~--~Gad~VmiGRa~l~~ 242 (376)
.|||+ .+.+.++.+ .|||++.+|++++..
T Consensus 193 dGGI~-~~~~~~~~~~~aGad~~VvGSaIf~~ 223 (237)
T 3cu2_A 193 DGSMT-LELAKYFKQGTHQIDWLVSGSALFSG 223 (237)
T ss_dssp ESSCC-HHHHHHHHHSSSCCCCEEECGGGGSS
T ss_pred ECCcC-HHHHHHHHHhCCCCcEEEEeeHHhCC
Confidence 99995 899999999 999999999999874
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.031 Score=52.36 Aligned_cols=202 Identities=9% Similarity=0.036 Sum_probs=109.8
Q ss_pred CCChHHHHHHHHHhCCCcEEEecce-eecccccccc---hhhhhhc-----cCCCCCCEEEEe---cCCCHHHHHHHHHH
Q 017176 18 DWTDNHYRTLARLISKHAWLYTEML-AAETIIYQQG---NLDRFLA-----FSPEQHPIVLQI---GGSNLDNLAKATEL 85 (376)
Q Consensus 18 ~~td~~~r~~~~~~Gg~gl~~te~v-~~~~~~~~~~---~~~~~~~-----~~~~~~p~~vQL---~g~~~~~~~~aa~~ 85 (376)
+.-|....+++.+.| +..+++.-. .+..+...+. ....++. ....+.|+++-+ +| +++...+.+++
T Consensus 25 ~a~D~~sA~~~~~aG-~~ai~vsg~~~a~~lG~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg-~~~~v~~~v~~ 102 (295)
T 1s2w_A 25 EAHNGLSARIVQEAG-FKGIWGSGLSVSAQLGVRDSNEASWTQVVEVLEFMSDASDVPILLDADTGYG-NFNNARRLVRK 102 (295)
T ss_dssp EECSHHHHHHHHHHT-CSCEEECCHHHHHTC---------CHHHHHHHHHHHHTCSSCEEEECCSSCS-SHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHcC-CCEEEeChHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEecCCCCCC-CHHHHHHHHHH
Confidence 566888888877776 777776622 1112222211 0111110 112356777765 34 57788888898
Q ss_pred HHHCCCCEEEecCCCCCccccCCCCccc--cccCCHHHHHHHHHHHhccc-CccEEEEecCCCC-CCccHHHHHHHHHHH
Q 017176 86 ANAYNYDEINLNCGCPSPKVAGHGCFGV--SLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVD-DHDSYNQLCDFIYKV 161 (376)
Q Consensus 86 ~~~~G~d~IeiN~gcP~~~v~r~g~yG~--~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~-~~~~~~~~~~~i~~~ 161 (376)
+.++|+.+|.|--+... +++ |+.|+ .-+-..+...+-|++++++. +.++.|--|..-. ....++++++. ++.
T Consensus 103 l~~aGaagv~iED~~~~-k~c--gH~gg~~k~l~p~~e~~~rI~Aa~~a~~~~~~~i~aRtda~~a~~g~~~ai~R-a~a 178 (295)
T 1s2w_A 103 LEDRGVAGACLEDKLFP-KTN--SLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARVEAFIAGWGLDEALKR-AEA 178 (295)
T ss_dssp HHHTTCCEEEEECBCC-----------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTTTCCHHHHHHH-HHH
T ss_pred HHHcCCcEEEECCCCCC-ccc--cccCCCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHHhccccHHHHHHH-HHH
Confidence 88999999999876542 223 34442 22334444445555555432 3344444443211 11225666665 345
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHh
Q 017176 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l 240 (376)
++++|+|.|.++++... .+.+.++.+++. .+|+++|-.-+..-++.++-+.|+..|.+|-.++
T Consensus 179 y~eAGAd~i~~e~~~~~----------------~~~~~~i~~~~~~~~P~i~~~~~~~~~~~~eL~~lGv~~v~~~~~~~ 242 (295)
T 1s2w_A 179 YRNAGADAILMHSKKAD----------------PSDIEAFMKAWNNQGPVVIVPTKYYKTPTDHFRDMGVSMVIWANHNL 242 (295)
T ss_dssp HHHTTCSEEEECCCSSS----------------SHHHHHHHHHHTTCSCEEECCSTTTTSCHHHHHHHTCCEEEECSHHH
T ss_pred HHHcCCCEEEEcCCCCC----------------HHHHHHHHHHcCCCCCEEEeCCCCCCCCHHHHHHcCCcEEEEChHHH
Confidence 67899999999864210 234455665542 3999998432111125555568999999987765
Q ss_pred h
Q 017176 241 Q 241 (376)
Q Consensus 241 ~ 241 (376)
.
T Consensus 243 r 243 (295)
T 1s2w_A 243 R 243 (295)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.014 Score=57.33 Aligned_cols=130 Identities=10% Similarity=-0.073 Sum_probs=86.2
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCccccCCCCccccc-cCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHHHHHH
Q 017176 80 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSL-MLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCD 156 (376)
Q Consensus 80 ~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l-~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~~~~~ 156 (376)
.+.++.+.+.||..+-++...+.. .+. |... ..+++...+.+++||+.+ ++++.|...-+|+ .++.++
T Consensus 161 ~~~a~~~~~~G~~~~K~~~~~~~~--~K~---G~~~~~~~~~~d~e~v~avR~a~g~d~~l~vDaN~~~~----~~~A~~ 231 (410)
T 3dip_A 161 GVLAESLVAEGYAAMKIWPFDDFA--SIT---PHHISLTDLKDGLEPFRKIRAAVGQRIEIMCELHSLWG----THAAAR 231 (410)
T ss_dssp HHHHHHHHHTTCSEEEECTTHHHH--TTC---TTCCCHHHHHHHHHHHHHHHHHHTTSSEEEEECTTCBC----HHHHHH
T ss_pred HHHHHHHHHcCCCEEEECCccCcc--ccc---cCcCCHHHHHHHHHHHHHHHHHcCCCceEEEECCCCCC----HHHHHH
Confidence 344556667899999996211110 011 2111 023567788999999987 4678777666665 345554
Q ss_pred HHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEE
Q 017176 157 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV 235 (376)
Q Consensus 157 ~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~Vmi 235 (376)
+ .+.+++.|+++|.-- . +++.+++..+++++.. ++||.+.+.+.+++++.++++ ..+|.|++
T Consensus 232 ~-~~~L~~~~i~~iEqP----~-----------~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~ 294 (410)
T 3dip_A 232 I-CNALADYGVLWVEDP----I-----------AKMDNIPAVADLRRQT-RAPICGGENLAGTRRFHEMLCADAIDFVML 294 (410)
T ss_dssp H-HHHGGGGTCSEEECC----B-----------SCTTCHHHHHHHHHHH-CCCEEECTTCCSHHHHHHHHHTTCCSEEEE
T ss_pred H-HHHHHhcCCCEEECC----C-----------CCcccHHHHHHHHhhC-CCCEEecCCcCCHHHHHHHHHcCCCCeEee
Confidence 4 456678899888610 0 1222366667777664 899999999999999999998 56899987
|
| >4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.017 Score=53.61 Aligned_cols=132 Identities=10% Similarity=0.017 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCcccccc---CCHHHHHHHHHHHhcccCccEEEEecCCCCCCccH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLM---LDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSY 151 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~---~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~ 151 (376)
..+.-+.-++.+.+.|+|.||+=+ .||.-+. .+.+.+.+-+++|++.++ +..+|+-+-.....+.
T Consensus 98 ~~e~K~~Ea~~Av~~GAdEIDmVi-----------nig~lk~~~~g~~~~V~~eI~~v~~a~~-~~~lKVIlEt~~Lt~~ 165 (297)
T 4eiv_A 98 TPDTVSLEAVGALKDGADEIECLI-----------DWRRMNENVADGESRIRLLVSEVKKVVG-PKTLKVVLSGGELQGG 165 (297)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEC-----------CTHHHHHCHHHHHHHHHHHHHHHHHHHT-TSEEEEECCSSCCCCH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeee-----------eHHHHhcccCCcHHHHHHHHHHHHHHhc-CCceEEEEecccCCcH
Confidence 344444445567778999999832 1355455 567888888888888774 4567766633222222
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhh--------------------CCCCeEE
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD--------------------FPDLTFT 211 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~--------------------~~~ipVi 211 (376)
+.+....+++.++|+|+|--+.+... .| +. +-+...+.+.+++ -.++-|=
T Consensus 166 -e~i~~A~~ia~~AGADFVKTSTGf~~-~g---AT-----~edV~lM~~~v~~~~~~~~~~~~~~~~~~~~~tg~~vgvK 235 (297)
T 4eiv_A 166 -DIISRAAVAALEGGADFLQTSSGLGA-TH---AT-----MFTVHLISIALREYMVRENERIRVEGINREGAAVRCIGIK 235 (297)
T ss_dssp -HHHHHHHHHHHHHTCSEEECCCSSSS-CC---CC-----HHHHHHHHHHHHHHHCC------------------CCEEE
T ss_pred -HHHHHHHHHHHHhCCCEEEcCCCCCC-CC---CC-----HHHHHHHHHHHHHHhccccccccccccccccccCCceeEE
Confidence 32222345566899999986654311 11 11 1112333344421 1468898
Q ss_pred Ee-cCCCCHHHHHHHHHc
Q 017176 212 LN-GGINTVDEVNAALRK 228 (376)
Q Consensus 212 ~n-GgI~s~~da~~~l~~ 228 (376)
++ |||+|.+|+.++++.
T Consensus 236 As~GGIrt~e~A~~~i~~ 253 (297)
T 4eiv_A 236 IEVGDVHMAETADFLMQM 253 (297)
T ss_dssp EECTTCCHHHHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHHHH
Confidence 99 999999999999984
|
| >1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.011 Score=52.72 Aligned_cols=131 Identities=15% Similarity=0.106 Sum_probs=78.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHH
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQ 153 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~ 153 (376)
..|+.+.+ .+.++|+|.|.+|... | .+-+.++++.+++ .+.++.+++--++. ....
T Consensus 67 dip~t~~~---~~~~~Gad~itvh~~~-----------g------~~~l~~~~~~~~~-~g~~~~~~ll~~~t-~~~~-- 122 (216)
T 1q6o_A 67 DAGKILSR---MCFEANADWVTVICCA-----------D------INTAKGALDVAKE-FNGDVQIELTGYWT-WEQA-- 122 (216)
T ss_dssp SCHHHHHH---HHHHTTCSEEEEETTS-----------C------HHHHHHHHHHHHH-TTCEEEEEECSCCC-HHHH--
T ss_pred ccHHHHHH---HHHhCCCCEEEEeccC-----------C------HHHHHHHHHHHHH-cCCCceeeeeeCCC-hhhH--
Confidence 45777755 5667999999998521 1 1234556666665 36666555431333 1111
Q ss_pred HHHHHHHHhhcCCccEEEEccCc-cccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcC
Q 017176 154 LCDFIYKVSSLSPTRHFIIHSRK-ALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAH 231 (376)
Q Consensus 154 ~~~~i~~~~e~~Gvd~I~vh~r~-~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad 231 (376)
+ .+++.|.+.+.+|-.. ....|..+ ..+.+..+++... ++||++.|||+ ++.+.++++.|||
T Consensus 123 --~----~l~~~~~~~~vl~~a~~~~~~G~~g---------~~~~i~~lr~~~~~~~~i~v~GGI~-~~~~~~~~~aGad 186 (216)
T 1q6o_A 123 --Q----QWRDAGIGQVVYHRSRDAQAAGVAW---------GEADITAIKRLSDMGFKVTVTGGLA-LEDLPLFKGIPIH 186 (216)
T ss_dssp --H----HHHHTTCCEEEEECCHHHHHTTCCC---------CHHHHHHHHHHHHTTCEEEEESSCC-GGGGGGGTTSCCS
T ss_pred --H----HHHhcCcHHHHHHHHHHHHhcCCCC---------CHHHHHHHHHhcCCCCcEEEECCcC-hhhHHHHHHcCCC
Confidence 1 1234577777776422 11123221 1233334333222 68899999997 7888888889999
Q ss_pred eeEEchHHhhCCc
Q 017176 232 HVMVGRAAYQNPW 244 (376)
Q Consensus 232 ~VmiGRa~l~~P~ 244 (376)
++.+||++...+.
T Consensus 187 ~ivvG~~I~~a~d 199 (216)
T 1q6o_A 187 VFIAGRSIRDAAS 199 (216)
T ss_dssp EEEESHHHHTSSC
T ss_pred EEEEeehhcCCCC
Confidence 9999999987654
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.058 Score=49.98 Aligned_cols=189 Identities=15% Similarity=0.088 Sum_probs=118.6
Q ss_pred CCCChHHHHHHHHHhCCCcEEEecc--eeecccccccc---hhh-------hhhccCCCCCCEEEEe---cCCCHHHHHH
Q 017176 17 MDWTDNHYRTLARLISKHAWLYTEM--LAAETIIYQQG---NLD-------RFLAFSPEQHPIVLQI---GGSNLDNLAK 81 (376)
Q Consensus 17 ~~~td~~~r~~~~~~Gg~gl~~te~--v~~~~~~~~~~---~~~-------~~~~~~~~~~p~~vQL---~g~~~~~~~~ 81 (376)
.+.-|....+++.+.| +..+++.- ++ ..+.+.+. ... .+.+. .+.|+++-+ ||.+++...+
T Consensus 21 ~~a~D~~sA~~~~~aG-~~ai~vsg~s~a-~~~G~pD~~~vt~~em~~~~~~I~~~--~~~pviaD~d~Gyg~~~~~~~~ 96 (275)
T 2ze3_A 21 PNAWDVASARLLEAAG-FTAIGTTSAGIA-HARGRTDGQTLTRDEMGREVEAIVRA--VAIPVNADIEAGYGHAPEDVRR 96 (275)
T ss_dssp CEESSHHHHHHHHHHT-CSCEEECHHHHH-HHSCCCSSSSSCHHHHHHHHHHHHHH--CSSCEEEECTTCSSSSHHHHHH
T ss_pred ecccCHHHHHHHHHcC-CCEEEECcHHHH-HhCCCCCCCCCCHHHHHHHHHHHHhh--cCCCEEeecCCCCCCCHHHHHH
Confidence 3666888888887776 77777663 22 12222221 011 11111 236787765 4568999999
Q ss_pred HHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc---CccEEEEecCCCCCC-------ccH
Q 017176 82 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT---NVPVSVKCRIGVDDH-------DSY 151 (376)
Q Consensus 82 aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~---~~pv~vKiR~g~~~~-------~~~ 151 (376)
.++++.++|+.+|.|--+... . |.. +-..+...+-|++++++. ++|+.|--|..-.-. +.+
T Consensus 97 ~v~~l~~aGaagv~iED~~~~-------~-~k~-l~~~~e~~~~I~aa~~a~~~~g~~~~i~aRtda~~~~~g~~~~~~~ 167 (275)
T 2ze3_A 97 TVEHFAALGVAGVNLEDATGL-------T-PTE-LYDLDSQLRRIEAARAAIDASGVPVFLNARTDTFLKGHGATDEERL 167 (275)
T ss_dssp HHHHHHHTTCSEEEEECBCSS-------S-SSC-BCCHHHHHHHHHHHHHHHHHHTSCCEEEEECCTTTTTCSSSHHHHH
T ss_pred HHHHHHHcCCcEEEECCCcCC-------C-CCc-cCCHHHHHHHHHHHHHhHhhcCCCeEEEEechhhhccccccchhhH
Confidence 999999999999999765421 1 222 345666777777776652 677777767532100 135
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEec--CCCCHHHHHHHHHcC
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG--GINTVDEVNAALRKG 229 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nG--gI~s~~da~~~l~~G 229 (376)
+++++. ++.++++|+|.|.+++... .+.+.++.+++ ++|+-.+. +..+. .++-+.|
T Consensus 168 ~~ai~R-a~ay~eAGAd~i~~e~~~~-----------------~~~~~~i~~~~-~~P~n~~~~~~~~~~---~eL~~lG 225 (275)
T 2ze3_A 168 AETVRR-GQAYADAGADGIFVPLALQ-----------------SQDIRALADAL-RVPLNVMAFPGSPVP---RALLDAG 225 (275)
T ss_dssp HHHHHH-HHHHHHTTCSEEECTTCCC-----------------HHHHHHHHHHC-SSCEEEECCTTSCCH---HHHHHTT
T ss_pred HHHHHH-HHHHHHCCCCEEEECCCCC-----------------HHHHHHHHHhc-CCCEEEecCCCCCCH---HHHHHcC
Confidence 666665 3466789999999987421 45567777776 78986664 34443 4555579
Q ss_pred cCeeEEchHHh
Q 017176 230 AHHVMVGRAAY 240 (376)
Q Consensus 230 ad~VmiGRa~l 240 (376)
+..|.+|-.++
T Consensus 226 v~~v~~~~~~~ 236 (275)
T 2ze3_A 226 AARVSFGQSLM 236 (275)
T ss_dssp CSEEECTTHHH
T ss_pred CcEEEEChHHH
Confidence 99998876654
|
| >3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0019 Score=56.59 Aligned_cols=47 Identities=19% Similarity=0.239 Sum_probs=41.2
Q ss_pred HHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017176 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 196 ~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
+.+.++.+.. ++|||+.|.|+|.+|+.++++.|||+|..++..|.+.
T Consensus 140 ~iI~~i~~~~-~~PiIaGGlI~~~edv~~al~aGA~aVsTs~~~LW~~ 186 (192)
T 3kts_A 140 EQVQKMTQKL-HIPVIAGGLIETSEQVNQVIASGAIAVTTSNKHLWEG 186 (192)
T ss_dssp HHHHHHHHHH-CCCEEEESSCCSHHHHHHHHTTTEEEEEECCGGGGTT
T ss_pred HHHHHHHHhc-CCCEEEECCcCCHHHHHHHHHcCCeEEEeCCHHHhCc
Confidence 5667777664 9999999999999999999999999999998887664
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0044 Score=63.31 Aligned_cols=78 Identities=14% Similarity=0.146 Sum_probs=55.4
Q ss_pred HHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCH-----------HHHHHHH
Q 017176 158 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV-----------DEVNAAL 226 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~-----------~da~~~l 226 (376)
+++.+++.|++.|++---+....+. ...+...+.++++.++. .+||++.|||++. +++.+++
T Consensus 285 ~A~~~~~~Ga~~l~~~dl~~~~~~~------~~~~~~~~~i~~i~~~~-~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l 357 (555)
T 1jvn_A 285 LAQKYYQQGADEVTFLNITSFRDCP------LKDTPMLEVLKQAAKTV-FVPLTVGGGIKDIVDVDGTKIPALEVASLYF 357 (555)
T ss_dssp HHHHHHHTTCSEEEEEEEC---CCC------GGGCHHHHHHHHHTTTC-CSCEEEESSCSCEECTTCCEECHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEEeCCcccccc------CCCchHHHHHHHHHhhC-CCcEEEeCccccchhcccccchHHHHHHHHH
Confidence 3556677899999875322211110 01112366777777664 8999999999998 5599999
Q ss_pred HcCcCeeEEchHHhhC
Q 017176 227 RKGAHHVMVGRAAYQN 242 (376)
Q Consensus 227 ~~Gad~VmiGRa~l~~ 242 (376)
+.|||.|.||++++.|
T Consensus 358 ~aGad~V~igt~~~~~ 373 (555)
T 1jvn_A 358 RSGADKVSIGTDAVYA 373 (555)
T ss_dssp HHTCSEEEECHHHHHH
T ss_pred HcCCCEEEECCHHhhC
Confidence 9999999999999884
|
| >3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.057 Score=54.83 Aligned_cols=77 Identities=12% Similarity=-0.003 Sum_probs=52.5
Q ss_pred hcCC---ccEEEEccCccccCCCCCCCCCCC-CcccHHHHHHHHhhC-----CCCeEEEecCCCCHHHHHHHHH------
Q 017176 163 SLSP---TRHFIIHSRKALLNGISPAENRTI-PPLKYEYYYALLRDF-----PDLTFTLNGGINTVDEVNAALR------ 227 (376)
Q Consensus 163 e~~G---vd~I~vh~r~~~~~g~~~~~~~~~-~~~~~~~v~~~~~~~-----~~ipVi~nGgI~s~~da~~~l~------ 227 (376)
.+.| +|+|.+..-..... +. ... ++..++.+.++.+.. .++||++-||| +++++.++++
T Consensus 125 ~~~G~~~aDYv~~Gpvf~T~t----K~-~~~~~~~G~~~l~~i~~~~~~~~~~~iPvvAIGGI-~~~ni~~v~~~~~~~g 198 (540)
T 3nl6_A 125 SKMGPDMVDYIGVGTLFPTLT----KK-NPKKAPMGTAGAIRVLDALERNNAHWCRTVGIGGL-HPDNIERVLYQCVSSN 198 (540)
T ss_dssp HHTCC--CCEEEESCCSCCCC----CC-----CCCHHHHHHHHHHHHHHTTCTTCEEEEESSC-CTTTHHHHHHHCBCTT
T ss_pred HHcCCCCCCEEEEcCCCCCCC----CC-CcCCCCCCHHHHHHHHHHHHhhccCCCCEEEEcCC-CHHHHHHHHHhhcccc
Confidence 3578 99999854221100 00 111 234466666655432 48999999999 8899999997
Q ss_pred --cCcCeeEEchHHhhCCch
Q 017176 228 --KGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 228 --~Gad~VmiGRa~l~~P~l 245 (376)
.|+|+|.++++++..++.
T Consensus 199 ~~~GadgvAVvsaI~~a~dp 218 (540)
T 3nl6_A 199 GKRSLDGICVVSDIIASLDA 218 (540)
T ss_dssp SSCBCSCEEESHHHHTCTTH
T ss_pred cccCceEEEEeHHHhcCCCH
Confidence 789999999999976553
|
| >1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.045 Score=50.72 Aligned_cols=121 Identities=6% Similarity=0.037 Sum_probs=72.5
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017176 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 63 ~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
.+.|+ +-+...|. -.|++++++|||.|=+ |.....+. .| |-..+.-..+.+...+++|++.++.|+.+ .-
T Consensus 32 ~g~~i-~~~tayDa----~sA~l~e~aG~d~ilv--GdSl~~~~-lG-~~dt~~vTldemi~h~~aV~r~~~~~~vv-aD 101 (281)
T 1oy0_A 32 DGHKW-AMLTAYDY----STARIFDEAGIPVLLV--GDSAANVV-YG-YDTTVPISIDELIPLVRGVVRGAPHALVV-AD 101 (281)
T ss_dssp HTCCE-EEEECCSH----HHHHHHHTTTCCEEEE--CTTHHHHT-TC-CSSSSSCCGGGTHHHHHHHHHHCTTSEEE-EE
T ss_pred CCCcE-EEEeCcCH----HHHHHHHHcCCCEEEE--CHHHHHHH-cC-CCCCCCCCHHHHHHHHHHHHhcCCCCeEE-EE
Confidence 34444 44566664 4788899999999943 32222111 11 22223344566777778887777766554 33
Q ss_pred CCCCCC-ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEE
Q 017176 143 IGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 211 (376)
Q Consensus 143 ~g~~~~-~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi 211 (376)
+++-.. .+.++.++...++++++|+++|.+-++..+ .+.|+.+.+. .|||+
T Consensus 102 ~pfgsy~~s~~~a~~na~rl~~eaGa~aVklEdg~e~----------------~~~I~al~~a--gIpV~ 153 (281)
T 1oy0_A 102 LPFGSYEAGPTAALAAATRFLKDGGAHAVKLEGGERV----------------AEQIACLTAA--GIPVM 153 (281)
T ss_dssp CCTTSSTTCHHHHHHHHHHHHHTTCCSEEEEEBSGGG----------------HHHHHHHHHH--TCCEE
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhCCeEEEECCcHHH----------------HHHHHHHHHC--CCCEE
Confidence 333222 245666665667788899999999886311 3456666654 78887
|
| >2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.013 Score=54.25 Aligned_cols=95 Identities=14% Similarity=0.232 Sum_probs=62.6
Q ss_pred HHHHHHHhcccC--ccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHH-HHH
Q 017176 123 GEAMSVIAANTN--VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE-YYY 199 (376)
Q Consensus 123 ~eiv~~v~~~~~--~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~-~v~ 199 (376)
.+-++++++..+ .++.+-+ ++++++.+. + ++|+|+|-++.... .... .+.
T Consensus 169 ~~ai~~~r~~~~~~~~i~vev-------~tlee~~~A----~-~aGaD~I~ld~~~~---------------~~l~~~v~ 221 (273)
T 2b7n_A 169 KSFLTHARKNLPFTAKIEIEC-------ESFEEAKNA----M-NAGADIVMCDNLSV---------------LETKEIAA 221 (273)
T ss_dssp HHHHHHHGGGSCTTCCEEEEE-------SSHHHHHHH----H-HHTCSEEEEETCCH---------------HHHHHHHH
T ss_pred HHHHHHHHHhCCCCceEEEEc-------CCHHHHHHH----H-HcCCCEEEECCCCH---------------HHHHHHHH
Confidence 456667776654 3444421 234454332 2 47999999875221 0111 122
Q ss_pred HHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 200 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 200 ~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
.+...++++||.++||| |.+.+.++.++|+|++.+|+.....|++
T Consensus 222 ~l~~~~~~~~i~AsGGI-~~~ni~~~~~aGaD~i~vGs~i~~a~~~ 266 (273)
T 2b7n_A 222 YRDAHYPFVLLEASGNI-SLESINAYAKSGVDAISVGALIHQATFI 266 (273)
T ss_dssp HHHHHCTTCEEEEESSC-CTTTHHHHHTTTCSEEECTHHHHTCCCC
T ss_pred HhhccCCCcEEEEECCC-CHHHHHHHHHcCCcEEEEcHHhcCCCCC
Confidence 23334567999999999 9999999999999999999998877765
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.023 Score=54.76 Aligned_cols=95 Identities=12% Similarity=0.155 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHH
Q 017176 118 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 197 (376)
Q Consensus 118 ~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~ 197 (376)
.++...+.++.+++....|+.+-+-. .+ .+.+ . .+.++|+|.|+++... |.+ ....+.
T Consensus 79 s~e~~~~~I~~vk~~~~~pvga~ig~--~~----~e~a---~-~l~eaGad~I~ld~a~----G~~--------~~~~~~ 136 (361)
T 3khj_A 79 DMESQVNEVLKVKNSGGLRVGAAIGV--NE----IERA---K-LLVEAGVDVIVLDSAH----GHS--------LNIIRT 136 (361)
T ss_dssp CHHHHHHHHHHHHHTTCCCCEEEECT--TC----HHHH---H-HHHHTTCSEEEECCSC----CSB--------HHHHHH
T ss_pred CHHHHHHHHHHHHhccCceEEEEeCC--CH----HHHH---H-HHHHcCcCeEEEeCCC----CCc--------HHHHHH
Confidence 46777888898887777888776643 22 2222 2 2346899999987431 110 111456
Q ss_pred HHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017176 198 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 198 v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
+.++++.+ ++|||+ |.+.+++++..+.+.|||+|.+|
T Consensus 137 i~~i~~~~-~~~Viv-g~v~t~e~A~~l~~aGaD~I~VG 173 (361)
T 3khj_A 137 LKEIKSKM-NIDVIV-GNVVTEEATKELIENGADGIKVG 173 (361)
T ss_dssp HHHHHHHC-CCEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHhc-CCcEEE-ccCCCHHHHHHHHHcCcCEEEEe
Confidence 67777766 899887 67899999999999999999996
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.017 Score=55.90 Aligned_cols=98 Identities=15% Similarity=0.187 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHH
Q 017176 118 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 197 (376)
Q Consensus 118 ~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~ 197 (376)
+++...+.++.+++.-.+++.+- +++.. +.. +.++ .+.++|+|.|.++.-. |.+ +...+.
T Consensus 80 s~e~~~~~i~~vk~~~~l~vga~--vg~~~-~~~-~~~~----~lieaGvd~I~idta~----G~~--------~~~~~~ 139 (366)
T 4fo4_A 80 SIEQQAAQVHQVKISGGLRVGAA--VGAAP-GNE-ERVK----ALVEAGVDVLLIDSSH----GHS--------EGVLQR 139 (366)
T ss_dssp CHHHHHHHHHHHHTTTSCCCEEE--CCSCT-TCH-HHHH----HHHHTTCSEEEEECSC----TTS--------HHHHHH
T ss_pred CHHHHHHHHHHHHhcCceeEEEE--eccCh-hHH-HHHH----HHHhCCCCEEEEeCCC----CCC--------HHHHHH
Confidence 46777888888887533444443 33322 112 2222 2346899999986321 111 111456
Q ss_pred HHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017176 198 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 198 v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
+.++++.++++|||+ |.+.|.+++.++.+.|||+|.+|
T Consensus 140 I~~ik~~~p~v~Vi~-G~v~t~e~A~~a~~aGAD~I~vG 177 (366)
T 4fo4_A 140 IRETRAAYPHLEIIG-GNVATAEGARALIEAGVSAVKVG 177 (366)
T ss_dssp HHHHHHHCTTCEEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHhcCCCceEe-eeeCCHHHHHHHHHcCCCEEEEe
Confidence 777887777888876 78999999999999999999995
|
| >2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.014 Score=52.32 Aligned_cols=133 Identities=13% Similarity=0.094 Sum_probs=76.5
Q ss_pred HHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHh
Q 017176 83 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVS 162 (376)
Q Consensus 83 a~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~ 162 (376)
+..+.++|+|+|-|... . |.-- .+.+.+.++..++. ++.+.+=+.. .. +. . .+
T Consensus 75 ~~~~~~~Gad~Vll~~s----e--r~l~--------~~e~~~~~~~a~~~-Gl~~iv~v~~----~~---e~----~-~~ 127 (219)
T 2h6r_A 75 AEAIKDCGCKGTLINHS----E--KRML--------LADIEAVINKCKNL-GLETIVCTNN----IN---TS----K-AV 127 (219)
T ss_dssp HHHHHHHTCCEEEESBT----T--BCCB--------HHHHHHHHHHHHHH-TCEEEEEESS----SH---HH----H-HH
T ss_pred HHHHHHcCCCEEEECCc----c--ccCC--------HHHHHHHHHHHHHC-CCeEEEEeCC----ch---HH----H-HH
Confidence 36677889999998321 0 1111 12356666665543 5544443321 11 21 1 12
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017176 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
.+.|.+.|.++.+...-.|..-. ...+-..+.+.+.++..+ ++||++-|||.+++++..+.+.|+|+|.+|++++.
T Consensus 128 ~~~~~~~i~~~~~~~iGtG~~~~---t~~~~~~~~~~~~ir~~~~~~~ii~ggGI~~~~~~~~~~~~gaDgvlVGsAi~~ 204 (219)
T 2h6r_A 128 AALSPDCIAVEPPELIGTGIPVS---KANPEVVEGTVRAVKEINKDVKVLCGAGISKGEDVKAALDLGAEGVLLASGVVK 204 (219)
T ss_dssp TTTCCSEEEECCCC-----------------CSHHHHHHHHHHCTTCEEEECSSCCSHHHHHHHHTTTCCCEEESHHHHT
T ss_pred HhCCCCEEEEEeccccccCCCCc---cCCHHHHHHHHHHHHhccCCCeEEEEeCcCcHHHHHHHhhCCCCEEEEcHHHhC
Confidence 35688899998876411220000 000111223333344433 79999999999999999998899999999999998
Q ss_pred CCch
Q 017176 242 NPWY 245 (376)
Q Consensus 242 ~P~l 245 (376)
-++.
T Consensus 205 ~~d~ 208 (219)
T 2h6r_A 205 AKNV 208 (219)
T ss_dssp CSSH
T ss_pred cccH
Confidence 7773
|
| >4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.073 Score=51.97 Aligned_cols=121 Identities=8% Similarity=-0.033 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHC-CCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHH
Q 017176 76 LDNLAKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQ 153 (376)
Q Consensus 76 ~~~~~~aa~~~~~~-G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~ 153 (376)
++++++.++.+.+. ||..+-+..| .+++.-.+.+++||+.+ +.++.|...-+|+. ++
T Consensus 169 ~e~~~~~a~~~~~~~G~~~~K~KvG-----------------~~~~~d~~~v~avR~~~~~~~l~vDaN~~w~~----~~ 227 (398)
T 4dye_A 169 PKAMAEHAVRVVEEGGFDAVKLKGT-----------------TDCAGDVAILRAVREALPGVNLRVDPNAAWSV----PD 227 (398)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECC-----------------SCHHHHHHHHHHHHHHCTTSEEEEECTTCSCH----HH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecC-----------------CCHHHHHHHHHHHHHhCCCCeEEeeCCCCCCH----HH
Confidence 68888888877777 9999988654 13455667788888776 56777777767753 34
Q ss_pred HHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCe
Q 017176 154 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHH 232 (376)
Q Consensus 154 ~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~ 232 (376)
.+++ .+.+++.|+.+|. . .++ +++..+++.+.. ++||.+...+.+.+++.++++ ..+|.
T Consensus 228 A~~~-~~~l~~~~i~~iE----q------------P~~--d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~a~d~ 287 (398)
T 4dye_A 228 SVRA-GIALEELDLEYLE----D------------PCV--GIEGMAQVKAKV-RIPLCTNMCVVRFEDFAPAMRLNAVDV 287 (398)
T ss_dssp HHHH-HHHHGGGCCSEEE----C------------CSS--HHHHHHHHHHHC-CSCEEESSSCCSGGGHHHHHHTTCCSE
T ss_pred HHHH-HHHHhhcCCCEEc----C------------CCC--CHHHHHHHHhhC-CCCEEeCCcCCCHHHHHHHHHhCCCCE
Confidence 4443 4456778888875 1 111 467777777765 899999999999999999998 56999
Q ss_pred eEEch
Q 017176 233 VMVGR 237 (376)
Q Consensus 233 VmiGR 237 (376)
|++--
T Consensus 288 v~~k~ 292 (398)
T 4dye_A 288 IHGDV 292 (398)
T ss_dssp EEECH
T ss_pred EEeCc
Confidence 98733
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.023 Score=52.03 Aligned_cols=70 Identities=11% Similarity=-0.019 Sum_probs=55.0
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.++++|+++|.|-.-.....| ..+.+..+++.+ ++||+.-+.|.+..++.++++.|||+|.++-.
T Consensus 71 A~~~~~~GA~~isvlt~~~~f~G------------~~~~l~~i~~~v-~lPvl~kdfI~d~~qi~~a~~~GAD~VlL~~~ 137 (254)
T 1vc4_A 71 ALAYARGGARAVSVLTEPHRFGG------------SLLDLKRVREAV-DLPLLRKDFVVDPFMLEEARAFGASAALLIVA 137 (254)
T ss_dssp HHHHHHTTCSEEEEECCCSSSCC------------CHHHHHHHHHHC-CSCEEEESCCCSHHHHHHHHHTTCSEEEEEHH
T ss_pred HHHHHHcCCCEEEEecchhhhcc------------CHHHHHHHHHhc-CCCEEECCcCCCHHHHHHHHHcCCCEEEECcc
Confidence 45567899999988432222222 156677777764 99999999999999999999999999999999
Q ss_pred Hhh
Q 017176 239 AYQ 241 (376)
Q Consensus 239 ~l~ 241 (376)
.+.
T Consensus 138 ~l~ 140 (254)
T 1vc4_A 138 LLG 140 (254)
T ss_dssp HHG
T ss_pred chH
Confidence 988
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.004 Score=57.43 Aligned_cols=69 Identities=16% Similarity=0.043 Sum_probs=56.3
Q ss_pred HHHhhcCCccEEEE---ccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEE
Q 017176 159 YKVSSLSPTRHFII---HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 235 (376)
Q Consensus 159 ~~~~e~~Gvd~I~v---h~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vmi 235 (376)
++.+++.|++.+++ .+ .+.+.+.++.++. .+||...|||++. ++++++ .|||-|.+
T Consensus 44 A~~~~~~Ga~~l~vvDL~~------------------~n~~~i~~i~~~~-~~pv~vgGGir~~-~~~~~l-~Ga~~Vii 102 (260)
T 2agk_A 44 AKLYKDRDVQGCHVIKLGP------------------NNDDAAREALQES-PQFLQVGGGINDT-NCLEWL-KWASKVIV 102 (260)
T ss_dssp HHHHHHTTCTTCEEEEESS------------------SCHHHHHHHHHHS-TTTSEEESSCCTT-THHHHT-TTCSCEEE
T ss_pred HHHHHHcCCCEEEEEeCCC------------------CCHHHHHHHHhcC-CceEEEeCCCCHH-HHHHHh-cCCCEEEE
Confidence 44566789998887 43 1267778888775 7999999999987 999999 99999999
Q ss_pred chHHhhC-----CchhhH
Q 017176 236 GRAAYQN-----PWYTLG 248 (376)
Q Consensus 236 GRa~l~~-----P~lf~~ 248 (376)
|++++.| |.++.+
T Consensus 103 gs~a~~~~g~~~p~~~~~ 120 (260)
T 2agk_A 103 TSWLFTKEGHFQLKRLER 120 (260)
T ss_dssp CGGGBCTTCCBCHHHHHH
T ss_pred CcHHHhhcCCCCHHHHHH
Confidence 9999999 987543
|
| >4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.013 Score=57.25 Aligned_cols=131 Identities=10% Similarity=-0.098 Sum_probs=85.7
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHHHHHHH
Q 017176 80 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDF 157 (376)
Q Consensus 80 ~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~~~~~~ 157 (376)
.+.++.+.+.||..+-+..|-|... .... |..-..+++...+.+++||+.+ ++++.+...-+|+ .++.+++
T Consensus 157 ~~~a~~~~~~G~~~~Kik~g~~~~~--~~~~-g~~~~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~----~~~A~~~ 229 (400)
T 4dxk_A 157 DELAHSLLEDGITAMKIWPFDAAAE--KTRG-QYISMPDLKSALEPFEKIRKAVGDKMDIMVEFHSMWQ----LLPAMQI 229 (400)
T ss_dssp HHHHHHHHHTTCCEEEECTTHHHHH--HHTT-SCCCHHHHHHHHHHHHHHHHHHGGGSEEEEECTTCBC----HHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEcCCCcccc--cccc-CcCCHHHHHHHHHHHHHHHHHcCCCceEEEECCCCCC----HHHHHHH
Confidence 3445566778999998876532110 0000 1000123567788999999987 4677777666664 3454544
Q ss_pred HHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEE
Q 017176 158 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV 235 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~Vmi 235 (376)
.+.+++.|+++|.- + +++-+++..+++++.. ++||.+.+.+.+++++.++++ ..+|.|++
T Consensus 230 -~~~L~~~~i~~iEe----P------------~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~l~~~a~d~v~~ 290 (400)
T 4dxk_A 230 -AKALTPYQTFWHED----P------------IKMDSLSSLTRYAAVS-PAPISASETLGSRWAFRDLLETGAAGVVML 290 (400)
T ss_dssp -HHHTGGGCCSEEEC----C------------BCTTSGGGHHHHHHHC-SSCEEECTTCCHHHHHHHHHHTTCCCEEEE
T ss_pred -HHHHhhcCCCEEEc----C------------CCcccHHHHHHHHHhC-CCCEEecCCcCCHHHHHHHHHcCCCCEEEe
Confidence 45667889998871 1 1111244456666664 899999999999999999999 45899987
|
| >3ve9_A Orotidine-5'-phosphate decarboxylase; TIM barrel fold, orotidine 5'-monopho decarboxylase, lyase; 1.45A {Metallosphaera sedula} PDB: 3ve7_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.034 Score=49.66 Aligned_cols=138 Identities=14% Similarity=0.185 Sum_probs=84.7
Q ss_pred CCCEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017176 64 QHPIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 64 ~~p~~vQL~-g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
+.++++=+- +--|.....+++.+.++ +|.+.+|..... ...+. -+ +. +.-+++=++
T Consensus 50 g~~VflDlK~~DIpnTv~~a~~~~~~~-ad~vTvh~~~G~----------~~~~~---~~----~~-----~~~v~vLts 106 (215)
T 3ve9_A 50 DGIKILDLKLADIDNTMILIVDELKDI-TNSFIAHAFVGV----------EGSLA---SL----SQ-----RVDLFLVLS 106 (215)
T ss_dssp CSEEEEEEEECSCHHHHHHHHHHHTTT-CSEEEEEGGGCT----------TTTHH---HH----HH-----HSEEEEECC
T ss_pred CCcEEEEecccCchhHHHHHHHHHHHh-hheEEEeCCCCc----------HHHHH---hH----hc-----CCCEEEEEe
Confidence 567776664 44577777788888889 999999853220 11111 01 11 112555555
Q ss_pred CCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCH-HH
Q 017176 143 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV-DE 221 (376)
Q Consensus 143 ~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~-~d 221 (376)
++..+.. .+....++++.+++|++.+.+++.. .+.+..+++..++ .++..+||..- .+
T Consensus 107 ~s~~~~~--~~~v~~~a~~a~~~G~~GvV~sat~------------------~~e~~~ir~~~~~-f~~v~pGI~~~g~~ 165 (215)
T 3ve9_A 107 MSHPGWN--DAFYPYLREVARRVNPKGFVAPATR------------------PSMISRVKGDFPD-KLVISPGVGTQGAK 165 (215)
T ss_dssp CSSTTCC--GGGHHHHHHHHHHHCCSEEECCTTS------------------HHHHHHHHHHCTT-SEEEECCTTSTTCC
T ss_pred cCCcchH--HHHHHHHHHHHHHcCCCceeeCCCC------------------HHHHHHHHHhCCC-cEEEcCCCCcCcCC
Confidence 5432211 1223334556667899988876432 2334555666667 78888999742 25
Q ss_pred HHHHHHcCcCeeEEchHHhhCCch
Q 017176 222 VNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 222 a~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
..++++.|+|.+.+||+++..++-
T Consensus 166 ~~~a~~~Gad~iVvGr~I~~a~dp 189 (215)
T 3ve9_A 166 PGIALCHGADYEIVGRSVYQSADP 189 (215)
T ss_dssp TTHHHHTTCSEEEECHHHHTSSSH
T ss_pred HHHHHHcCCCEEEeCHHHcCCCCH
Confidence 667788999999999999987653
|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.13 Score=47.53 Aligned_cols=120 Identities=9% Similarity=0.010 Sum_probs=73.2
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCcc-EEEEec
Q 017176 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP-VSVKCR 142 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~p-v~vKiR 142 (376)
+.|+ +-+...|. -.|++++++|||.|=+ |.....+. .| |-..+.-..+.+...+++|++.++.| |.+-+.
T Consensus 16 g~~i-~~~tayDa----~sA~l~e~aG~d~ilv--GdSl~~~~-lG-~~dt~~vTldemi~h~~aV~r~~~~~~vvaD~p 86 (275)
T 1o66_A 16 GEKI-AMLTAYES----SFAALMDDAGVEMLLV--GDSLGMAV-QG-RKSTLPVSLRDMCYHTECVARGAKNAMIVSDLP 86 (275)
T ss_dssp TCCE-EEEECCSH----HHHHHHHHTTCCEEEE--CTTHHHHT-TC-CSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECC
T ss_pred CCcE-EEEeCcCH----HHHHHHHHcCCCEEEE--CHHHHHHH-cC-CCCCCCCCHHHHHHHHHHHHhhCCCCeEEEECC
Confidence 4444 34566664 4788899999999943 33222211 11 23334456788888888888888754 555544
Q ss_pred CCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE
Q 017176 143 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL 212 (376)
Q Consensus 143 ~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~ 212 (376)
.|-. ..+.++.++.+.++.+ +|+++|.+-++..+ .+.|+.+.+. .|||++
T Consensus 87 fgsy-~~s~~~a~~na~rl~k-aGa~aVklEdg~e~----------------~~~I~al~~a--gIpV~g 136 (275)
T 1o66_A 87 FGAY-QQSKEQAFAAAAELMA-AGAHMVKLEGGVWM----------------AETTEFLQMR--GIPVCA 136 (275)
T ss_dssp TTSS-SSCHHHHHHHHHHHHH-TTCSEEEEECSGGG----------------HHHHHHHHHT--TCCEEE
T ss_pred CCCc-cCCHHHHHHHHHHHHH-cCCcEEEECCcHHH----------------HHHHHHHHHc--CCCeEe
Confidence 4311 1345566665556655 99999999876311 4456666553 788874
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.4 Score=42.96 Aligned_cols=117 Identities=11% Similarity=0.054 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCC--C---c
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD--H---D 149 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~--~---~ 149 (376)
++..+.+.|+.+++.|..+|.++ + .+-++++|+.+++||.-..+..+.+ . .
T Consensus 34 ~~~~~~~~A~a~~~~Ga~~i~~~--------------~----------~~~i~~ir~~v~~Pvig~~k~~~~~~~~~I~~ 89 (229)
T 3q58_A 34 KPEIVAAMAQAAASAGAVAVRIE--------------G----------IENLRTVRPHLSVPIIGIIKRDLTGSPVRITP 89 (229)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEE--------------S----------HHHHHHHGGGCCSCEEEECBCCCSSCCCCBSC
T ss_pred CcchHHHHHHHHHHCCCcEEEEC--------------C----------HHHHHHHHHhcCCCEEEEEeecCCCCceEeCc
Confidence 47889999999999999999862 0 2457888999999986444432221 0 2
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcC
Q 017176 150 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG 229 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~G 229 (376)
+.+++ .. +.++|+|.|.+-..... .+ ....+++..+. +. ++++++ ++.+.+++.++.+.|
T Consensus 90 ~~~~i----~~-~~~aGad~I~l~~~~~~----~p-------~~l~~~i~~~~-~~-g~~v~~--~v~t~eea~~a~~~G 149 (229)
T 3q58_A 90 YLQDV----DA-LAQAGADIIAFDASFRS----RP-------VDIDSLLTRIR-LH-GLLAMA--DCSTVNEGISCHQKG 149 (229)
T ss_dssp SHHHH----HH-HHHHTCSEEEEECCSSC----CS-------SCHHHHHHHHH-HT-TCEEEE--ECSSHHHHHHHHHTT
T ss_pred cHHHH----HH-HHHcCCCEEEECccccC----Ch-------HHHHHHHHHHH-HC-CCEEEE--ecCCHHHHHHHHhCC
Confidence 23332 22 23589999987653211 00 01133444443 33 666665 789999999999999
Q ss_pred cCeeEE
Q 017176 230 AHHVMV 235 (376)
Q Consensus 230 ad~Vmi 235 (376)
+|.|.+
T Consensus 150 ad~Ig~ 155 (229)
T 3q58_A 150 IEFIGT 155 (229)
T ss_dssp CSEEEC
T ss_pred CCEEEe
Confidence 999965
|
| >1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.033 Score=51.95 Aligned_cols=109 Identities=19% Similarity=0.222 Sum_probs=68.0
Q ss_pred cCCCCccccccCCHHHH-----HHHHHHHhcccC--ccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccc
Q 017176 106 AGHGCFGVSLMLDPKFV-----GEAMSVIAANTN--VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL 178 (376)
Q Consensus 106 ~r~g~yG~~l~~~~~~~-----~eiv~~v~~~~~--~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~ 178 (376)
+|.+-+++-|..+-... .+-++.+|+..+ .++.|-+ ++.+++.+ ++ ++|+|+|-++.-+.
T Consensus 161 HR~~L~d~~LIkdnHi~~aggi~~av~~ar~~~~~~~~IgVev-------~t~eea~e----A~-~aGaD~I~ld~~~~- 227 (286)
T 1x1o_A 161 HRYGLFDGILLKENHVRAAGGVGEAVRRAKARAPHYLKVEVEV-------RSLEELEE----AL-EAGADLILLDNFPL- 227 (286)
T ss_dssp CCSSSSSCEEECHHHHHHHTSHHHHHHHHHHHSCTTSCEEEEE-------SSHHHHHH----HH-HHTCSEEEEESCCH-
T ss_pred cccccccceEEECCHHHHhCCHHHHHHHHHHhCCCCCEEEEEe-------CCHHHHHH----HH-HcCCCEEEECCCCH-
Confidence 45555455555554332 334555565542 3455522 23445432 22 57999999886431
Q ss_pred cCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 179 LNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 179 ~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
+.+++.++.. .++|+.+.||| +.+.+.+..++|+|+|.+|.....-|++
T Consensus 228 -----------------~~~k~av~~v~~~ipi~AsGGI-t~eni~~~a~tGvD~IsVgs~~~~a~~~ 277 (286)
T 1x1o_A 228 -----------------EALREAVRRVGGRVPLEASGNM-TLERAKAAAEAGVDYVSVGALTHSAKAL 277 (286)
T ss_dssp -----------------HHHHHHHHHHTTSSCEEEESSC-CHHHHHHHHHHTCSEEECTHHHHSCCCC
T ss_pred -----------------HHHHHHHHHhCCCCeEEEEcCC-CHHHHHHHHHcCCCEEEEcHHHcCCCce
Confidence 2222332222 26999999999 6999999999999999999877766764
|
| >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.18 Score=46.22 Aligned_cols=143 Identities=11% Similarity=0.038 Sum_probs=86.4
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCcc-EEEEe
Q 017176 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP-VSVKC 141 (376)
Q Consensus 63 ~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~p-v~vKi 141 (376)
.+.|+ +-+...|. -.|++++++|||.|=+ |.....+. .| |-..+.-..+.+..-+++|++.++.| |.+-+
T Consensus 15 ~g~~i-~~~tayD~----~sA~l~e~aG~d~ilv--Gdsl~~~~-lG-~~dt~~vtldemi~h~~aV~r~~~~~~vvaD~ 85 (264)
T 1m3u_A 15 EKKRF-ATITAYDY----SFAKLFADEGLNVMLV--GDSLGMTV-QG-HDSTLPVTVADIAYHTAAVRRGAPNCLLLADL 85 (264)
T ss_dssp HTCCE-EEEECCSH----HHHHHHHHHTCCEEEE--CTTHHHHT-TC-CSSSTTCCHHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred CCCcE-EEEeCcCH----HHHHHHHHcCCCEEEE--CHHHHHHH-cC-CCCCCCcCHHHHHHHHHHHHhhCCCCcEEEEC
Confidence 34444 34566664 4778889999999977 43332211 12 23334455678888888888887754 55555
Q ss_pred cCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE---------
Q 017176 142 RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL--------- 212 (376)
Q Consensus 142 R~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~--------- 212 (376)
..| ...+.++.++.+.++.+ +|+++|.+-++..+ .+.++.+.+. .|||++
T Consensus 86 pfg--sy~~~~~a~~~a~rl~k-aGa~aVklEgg~e~----------------~~~I~al~~a--gipV~gHiGLtPq~v 144 (264)
T 1m3u_A 86 PFM--AYATPEQAFENAATVMR-AGANMVKIEGGEWL----------------VETVQMLTER--AVPVCGHLGLTPQSV 144 (264)
T ss_dssp CTT--SSSSHHHHHHHHHHHHH-TTCSEEECCCSGGG----------------HHHHHHHHHT--TCCEEEEEESCGGGH
T ss_pred CCC--CcCCHHHHHHHHHHHHH-cCCCEEEECCcHHH----------------HHHHHHHHHC--CCCeEeeecCCceee
Confidence 443 22255666665556655 99999999876311 4456666554 789883
Q ss_pred --ecCC----CCHHHHHH-------HHHcCcCeeEE
Q 017176 213 --NGGI----NTVDEVNA-------ALRKGAHHVMV 235 (376)
Q Consensus 213 --nGgI----~s~~da~~-------~l~~Gad~Vmi 235 (376)
.||. ++.+.+++ +.+.|||+|.+
T Consensus 145 ~~~ggf~v~grt~~~a~~~i~rA~a~~eAGA~~ivl 180 (264)
T 1m3u_A 145 NIFGGYKVQGRGDEAGDQLLSDALALEAAGAQLLVL 180 (264)
T ss_dssp HHHTSSCCCCCSHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred cccCCeEEEeCCHHHHHHHHHHHHHHHHCCCcEEEE
Confidence 3443 24333333 23379998877
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0096 Score=55.21 Aligned_cols=75 Identities=11% Similarity=0.074 Sum_probs=58.0
Q ss_pred HHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEch
Q 017176 158 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGR 237 (376)
+++.+++.|+++|.|..-....+| ..+.+.++++. +++||+..+.|.|..++.++++.|||+|.++-
T Consensus 77 ~A~~y~~~GA~~isvltd~~~f~G------------s~~~l~~ir~~-v~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~ 143 (272)
T 3qja_A 77 LAQAYQDGGARIVSVVTEQRRFQG------------SLDDLDAVRAS-VSIPVLRKDFVVQPYQIHEARAHGADMLLLIV 143 (272)
T ss_dssp HHHHHHHTTCSEEEEECCGGGHHH------------HHHHHHHHHHH-CSSCEEEESCCCSHHHHHHHHHTTCSEEEEEG
T ss_pred HHHHHHHcCCCEEEEecChhhcCC------------CHHHHHHHHHh-CCCCEEECccccCHHHHHHHHHcCCCEEEEec
Confidence 355677899999998754332222 15667777766 49999999999999999999999999999998
Q ss_pred HHhhCCch
Q 017176 238 AAYQNPWY 245 (376)
Q Consensus 238 a~l~~P~l 245 (376)
+.+.+..+
T Consensus 144 a~l~~~~l 151 (272)
T 3qja_A 144 AALEQSVL 151 (272)
T ss_dssp GGSCHHHH
T ss_pred ccCCHHHH
Confidence 88765543
|
| >3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A | Back alignment and structure |
|---|
Probab=95.88 E-value=0.17 Score=47.98 Aligned_cols=152 Identities=13% Similarity=0.157 Sum_probs=80.8
Q ss_pred HHHHHHHCCCCEEEecCCCCCccccCCCCcccccc-CCHHHHHHHHHHHhcccCccEEEEe--cC-CCCCCcc--H----
Q 017176 82 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLM-LDPKFVGEAMSVIAANTNVPVSVKC--RI-GVDDHDS--Y---- 151 (376)
Q Consensus 82 aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~-~~~~~~~eiv~~v~~~~~~pv~vKi--R~-g~~~~~~--~---- 151 (376)
.++.+.+.|+|+|-+++- .+.+. ...+. ...+.+.++.++.+ ..++|+.+-+ +. +..+..+ +
T Consensus 115 sve~a~~~GADAVk~lv~------~g~d~-~~e~~~~q~~~l~rv~~ec~-~~GiPlllEil~y~~~~~~~~~~~~a~~~ 186 (332)
T 3iv3_A 115 SIKRLKEAGADAVKFLLY------YDVDG-DPQVNVQKQAYIERIGSECQ-AEDIPFFLEILTYDETISNNSSVEFAKVK 186 (332)
T ss_dssp CHHHHHHTTCSEEEEEEE------ECTTS-CHHHHHHHHHHHHHHHHHHH-HHTCCEEEEEEECBTTBSCTTSHHHHTTH
T ss_pred CHHHHHHcCCCEEEEEEE------cCCCc-hHHHHHHHHHHHHHHHHHHH-HcCCceEEEEeccCCCCCCCcchhhhccC
Confidence 467788999999988641 11111 10000 11234555555543 3489988744 22 2222111 1
Q ss_pred HHHHHHHHHHh--hcCCccEEEEc-cCcc-ccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEE-EecCCCCHHHHHHHH
Q 017176 152 NQLCDFIYKVS--SLSPTRHFIIH-SRKA-LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT-LNGGINTVDEVNAAL 226 (376)
Q Consensus 152 ~~~~~~i~~~~--e~~Gvd~I~vh-~r~~-~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi-~nGgI~s~~da~~~l 226 (376)
.+.+....+++ .+.|+|.+-+. .+.. ...|+...+.-+...-..+.++++... ..+|+| .+||+ +.++..+++
T Consensus 187 p~~V~~a~R~~~~~elGaDv~Kve~p~~~~~v~g~~~~~~~y~~~ea~~~f~~~~~a-~~~P~v~lsgG~-~~~~fl~~v 264 (332)
T 3iv3_A 187 VHKVNDAMKVFSAERFGIDVLKVEVPVNMVYVEGFAEGEVVYSKEEAAQAFREQEAS-TDLPYIYLSAGV-SAELFQETL 264 (332)
T ss_dssp HHHHHHHHHHHTSGGGCCSEEEECCSSCGGGBTTTCSSCCCBCHHHHHHHHHHHHHT-CSSCEEEECTTC-CHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCcCCcEEEEecCCChhhhcccccccccccHHHHHHHHHHHHhc-CCCCEEEECCCC-CHHHHHHHH
Confidence 23344445566 46799999886 2221 112322111001100012335566554 489965 79998 556655554
Q ss_pred ----HcCc--CeeEEchHHhhCC
Q 017176 227 ----RKGA--HHVMVGRAAYQNP 243 (376)
Q Consensus 227 ----~~Ga--d~VmiGRa~l~~P 243 (376)
+.|| .||.+||....+.
T Consensus 265 ~~A~~aGa~f~Gv~~GRnvwq~~ 287 (332)
T 3iv3_A 265 VFAHKAGAKFNGVLCGRATWAGS 287 (332)
T ss_dssp HHHHHHTCCCCEEEECHHHHTTH
T ss_pred HHHHHcCCCcceEEeeHHHHHhh
Confidence 4799 9999999998773
|
| >3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A | Back alignment and structure |
|---|
Probab=95.85 E-value=0.052 Score=48.58 Aligned_cols=143 Identities=17% Similarity=0.141 Sum_probs=81.3
Q ss_pred CCCEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC--ccEEEE
Q 017176 64 QHPIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVK 140 (376)
Q Consensus 64 ~~p~~vQL~-g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~--~pv~vK 140 (376)
+.++++=+- +..|+.+.++ +.++|+|.+.+|..+. .+-+.+.++.+++.-. ..+.|-
T Consensus 58 ~~~iflDlKl~Dip~t~~~~---~~~~Gad~vtVH~~~g-----------------~~~l~~a~~~~~~~g~~~~~~~Vt 117 (221)
T 3exr_A 58 DKIIVADTKCADAGGTVAKN---NAVRGADWMTCICSAT-----------------IPTMKAARKAIEDINPDKGEIQVE 117 (221)
T ss_dssp TSEEEEEEEECSCHHHHHHH---HHTTTCSEEEEETTSC-----------------HHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred CCcEEEEEEeeccHHHHHHH---HHHcCCCEEEEeccCC-----------------HHHHHHHHHHHHhcCCCcceEEEE
Confidence 345554432 3568877766 5778999999986322 1234455555544211 223333
Q ss_pred ecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCc-cccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCH
Q 017176 141 CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK-ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV 219 (376)
Q Consensus 141 iR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~-~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~ 219 (376)
+-.++ +.+++. .+ .+.|++.+.+|-.. ....|... .+.....+++... .+++|...||| ++
T Consensus 118 ~lts~----~~~~~~----~~-~~~~~~~~v~~~a~~~~~~Gvv~------s~~e~~~ir~~~~--~~~~i~v~gGI-~~ 179 (221)
T 3exr_A 118 LYGDW----TYDQAQ----QW-LDAGISQAIYHQSRDALLAGETW------GEKDLNKVKKLIE--MGFRVSVTGGL-SV 179 (221)
T ss_dssp CCSSC----CHHHHH----HH-HHTTCCEEEEECCHHHHHHTCCC------CHHHHHHHHHHHH--HTCEEEEESSC-CG
T ss_pred EcCCC----CHHHHH----HH-HcCCHHHHHHHHHHhcCCCcccc------CHHHHHHHHHhhc--CCceEEEECCC-CH
Confidence 22222 223322 12 24789998887433 22222110 1111223333332 26889999999 67
Q ss_pred HHHHHHHHcCcCeeEEchHHhhCCc
Q 017176 220 DEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 220 ~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
+++..+.+.|||.+.+||++...+.
T Consensus 180 ~~~~~~~~aGad~~VvG~~I~~a~d 204 (221)
T 3exr_A 180 DTLKLFEGVDVFTFIAGRGITEAKN 204 (221)
T ss_dssp GGGGGGTTCCCSEEEECHHHHTSSS
T ss_pred HHHHHHHHCCCCEEEECchhhCCCC
Confidence 7887777799999999999886554
|
| >3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.33 Score=45.48 Aligned_cols=143 Identities=17% Similarity=0.177 Sum_probs=84.5
Q ss_pred CCCEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCcc----EE
Q 017176 64 QHPIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP----VS 138 (376)
Q Consensus 64 ~~p~~vQL~-g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~p----v~ 138 (376)
+.++++=+- +--|.....+++.+.++|+|.+.+|. ||+ ++-+...++..++.-..| |+
T Consensus 76 g~~IflDlKl~DIpnTv~~av~~~a~lGaD~vTVHa------------~~G-----~~~m~aa~e~a~~~~~~~~llaVt 138 (303)
T 3ru6_A 76 DFKIFLDLKFHDIPNTMADACEEVSKLGVDMINIHA------------SAG-----KIAIQEVMTRLSKFSKRPLVLAVS 138 (303)
T ss_dssp CCEEEEEEEECSCHHHHHHHHHHHHTTTCSEEEEEG------------GGC-----HHHHHHHHHHHTTSSSCCEEEEEC
T ss_pred CCCEEEEeeeccCchhHHHHHHHHHhcCCCEEEEec------------cCC-----HHHHHHHHHHHHhcCCCceEEEEE
Confidence 556666553 34466677777888889999999984 122 234455555554332222 23
Q ss_pred EEecCCCCC-----CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEe
Q 017176 139 VKCRIGVDD-----HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN 213 (376)
Q Consensus 139 vKiR~g~~~-----~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~n 213 (376)
+.++.+..+ ..++.+.+..+++...++|++.+..++.. +..+++..++-.++..
T Consensus 139 vLTS~s~~~l~~l~~~~~~e~V~~lA~~a~~~G~dGvV~s~~E---------------------~~~IR~~~~~~fl~VT 197 (303)
T 3ru6_A 139 ALTSFDEENFFSIYRQKIEEAVINFSKISYENGLDGMVCSVFE---------------------SKKIKEHTSSNFLTLT 197 (303)
T ss_dssp SCTTCCHHHHHHHHSSCHHHHHHHHHHHHHHTTCSEEECCTTT---------------------HHHHHHHSCTTSEEEE
T ss_pred EecCCCHHHHHHHHcCCHHHHHHHHHHHHHHcCCCEEEECHHH---------------------HHHHHHhCCCccEEEC
Confidence 333332110 01233333334566678999998764321 2244444545568888
Q ss_pred cCCCCHH----------HHHHHHHcCcCeeEEchHHhhCCc
Q 017176 214 GGINTVD----------EVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 214 GgI~s~~----------da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
+||.-.. ++.++++.|||.+.+||++...+.
T Consensus 198 PGIr~qG~~~~DQ~Rv~t~~~a~~aGAd~iVvGr~I~~a~d 238 (303)
T 3ru6_A 198 PGIRPFGETNDDQKRVANLAMARENLSDYIVVGRPIYKNEN 238 (303)
T ss_dssp CCCCTTC--------CCSHHHHHHTTCSEEEECHHHHTSSC
T ss_pred CCcCcccCCcccccccCCHHHHHHcCCCEEEEChHHhCCCC
Confidence 8887221 355667899999999999998665
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.023 Score=52.60 Aligned_cols=73 Identities=14% Similarity=0.046 Sum_probs=56.2
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.++++|+++|.|-.-....+| ..+.+.++++. +++||+..+.|.++.++.++...|||+|.++-.
T Consensus 85 A~~y~~~GA~~IsVltd~~~f~G------------s~~~L~~ir~~-v~lPVl~Kdfi~d~~qi~ea~~~GAD~VlLi~a 151 (272)
T 3tsm_A 85 AKAYEEGGAACLSVLTDTPSFQG------------APEFLTAARQA-CSLPALRKDFLFDPYQVYEARSWGADCILIIMA 151 (272)
T ss_dssp HHHHHHTTCSEEEEECCSTTTCC------------CHHHHHHHHHT-SSSCEEEESCCCSTHHHHHHHHTTCSEEEEETT
T ss_pred HHHHHHCCCCEEEEeccccccCC------------CHHHHHHHHHh-cCCCEEECCccCCHHHHHHHHHcCCCEEEEccc
Confidence 45667899999988643322222 25677777665 599999999999999999999999999999988
Q ss_pred HhhCCc
Q 017176 239 AYQNPW 244 (376)
Q Consensus 239 ~l~~P~ 244 (376)
.+.+..
T Consensus 152 ~L~~~~ 157 (272)
T 3tsm_A 152 SVDDDL 157 (272)
T ss_dssp TSCHHH
T ss_pred ccCHHH
Confidence 875433
|
| >2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.019 Score=53.97 Aligned_cols=66 Identities=17% Similarity=0.217 Sum_probs=48.4
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHH-HHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYE-YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~-~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
++|+|+|-++..+. .... .+..+...++++||.++||| |.+.+.++.++|+|++.+|+.....
T Consensus 215 ~aGaD~I~ld~~~~---------------~~l~~~v~~l~~~~~~~~I~ASGGI-t~~ni~~~~~aGaD~i~vGs~i~~a 278 (299)
T 2jbm_A 215 EAGADLVLLDNFKP---------------EELHPTATVLKAQFPSVAVEASGGI-TLDNLPQFCGPHIDVISMGMLTQAA 278 (299)
T ss_dssp HTTCSEEEEESCCH---------------HHHHHHHHHHHHHCTTSEEEEESSC-CTTTHHHHCCTTCCEEECTHHHHSC
T ss_pred HcCCCEEEECCCCH---------------HHHHHHHHHhhccCCCeeEEEECCC-CHHHHHHHHHCCCCEEEEChhhcCC
Confidence 48999999875221 0111 12222233567999999999 9999999999999999999977666
Q ss_pred Cch
Q 017176 243 PWY 245 (376)
Q Consensus 243 P~l 245 (376)
|++
T Consensus 279 ~~~ 281 (299)
T 2jbm_A 279 PAL 281 (299)
T ss_dssp CCC
T ss_pred CCc
Confidence 765
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.012 Score=56.69 Aligned_cols=63 Identities=11% Similarity=0.057 Sum_probs=47.6
Q ss_pred HhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017176 161 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 161 ~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
.+.++|+|.|++|.-. |.+ ...++.+..+++..+++|||+ |+|.|++++..+.+.|||+|.+|
T Consensus 107 ~a~~aGvdvI~id~a~----G~~--------~~~~e~I~~ir~~~~~~~Vi~-G~V~T~e~A~~a~~aGaD~I~Vg 169 (361)
T 3r2g_A 107 ALRDAGADFFCVDVAH----AHA--------KYVGKTLKSLRQLLGSRCIMA-GNVATYAGADYLASCGADIIKAG 169 (361)
T ss_dssp HHHHTTCCEEEEECSC----CSS--------HHHHHHHHHHHHHHTTCEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHcCCCEEEEeCCC----CCc--------HhHHHHHHHHHHhcCCCeEEE-cCcCCHHHHHHHHHcCCCEEEEc
Confidence 3456899999997422 111 112667777777767889887 67999999999999999999985
|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.22 Score=45.90 Aligned_cols=155 Identities=11% Similarity=0.044 Sum_probs=88.4
Q ss_pred CCChHHHHHHHHHhCCCcEEEecceeec-ccccccc---hhhhhhc----c-CCCCC-CEEEEec-C---CCHHHHHHHH
Q 017176 18 DWTDNHYRTLARLISKHAWLYTEMLAAE-TIIYQQG---NLDRFLA----F-SPEQH-PIVLQIG-G---SNLDNLAKAT 83 (376)
Q Consensus 18 ~~td~~~r~~~~~~Gg~gl~~te~v~~~-~~~~~~~---~~~~~~~----~-~~~~~-p~~vQL~-g---~~~~~~~~aa 83 (376)
+.-|..+.+++.+.| ++.+.++-.... .+.+.+. ..+.++. + ...+. ++++-+- | .+++...+.|
T Consensus 23 tayDa~sA~l~e~aG-~d~ilvGdSl~~~~lG~~dt~~vTldemi~h~~aV~r~~~~~~vvaD~pfgsy~~s~~~a~~na 101 (275)
T 1o66_A 23 TAYESSFAALMDDAG-VEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAYQQSKEQAFAAA 101 (275)
T ss_dssp ECCSHHHHHHHHHTT-CCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCTTSSSSCHHHHHHHH
T ss_pred eCcCHHHHHHHHHcC-CCEEEECHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhCCCCeEEEECCCCCccCCHHHHHHHH
Confidence 567999999988886 888877632221 1111111 1112111 1 11233 3444442 2 3688888877
Q ss_pred HHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCC---------C----CCCcc
Q 017176 84 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG---------V----DDHDS 150 (376)
Q Consensus 84 ~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g---------~----~~~~~ 150 (376)
.++.++|+++|.|--| +...+.|+++.+ .++||.--+.+- + .+ +.
T Consensus 102 ~rl~kaGa~aVklEdg--------------------~e~~~~I~al~~-agIpV~gHiGLtPQs~~~~ggf~v~grt-~~ 159 (275)
T 1o66_A 102 AELMAAGAHMVKLEGG--------------------VWMAETTEFLQM-RGIPVCAHIGLTPQSVFAFGGYKVQGRG-GK 159 (275)
T ss_dssp HHHHHTTCSEEEEECS--------------------GGGHHHHHHHHH-TTCCEEEEEESCGGGTTC------------C
T ss_pred HHHHHcCCcEEEECCc--------------------HHHHHHHHHHHH-cCCCeEeeeccCceeecccCCeEEEeCh-HH
Confidence 7777799999988533 123444555544 367876333221 0 11 22
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecC
Q 017176 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 215 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGg 215 (376)
.+++++. ++.++++|++.|.+.+-. -+..+++.++. ++|+|+-|.
T Consensus 160 a~~~i~r-A~a~~eAGA~~ivlE~vp------------------~~~a~~it~~l-~iP~igIGa 204 (275)
T 1o66_A 160 AQALLND-AKAHDDAGAAVVLMECVL------------------AELAKKVTETV-SCPTIGIGA 204 (275)
T ss_dssp HHHHHHH-HHHHHHTTCSEEEEESCC------------------HHHHHHHHHHC-SSCEEEESS
T ss_pred HHHHHHH-HHHHHHcCCcEEEEecCC------------------HHHHHHHHHhC-CCCEEEECC
Confidence 4556554 456788999999987632 23455666765 899998764
|
| >3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ... | Back alignment and structure |
|---|
Probab=95.66 E-value=0.2 Score=44.96 Aligned_cols=143 Identities=13% Similarity=0.066 Sum_probs=79.9
Q ss_pred CCCEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017176 64 QHPIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 64 ~~p~~vQL~-g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
+.++++=+- +..|+....+++.+.++|+|.|.+|.-+ | .+-+...++.+++. +.-|++=..
T Consensus 64 g~~v~lD~Kl~DipnTv~~~~~~~~~~gad~vtvh~~~-----------G------~~~l~~~~~~~~~~-g~~v~vLt~ 125 (228)
T 3m47_A 64 GCRIIADFKVADIPETNEKICRATFKAGADAIIVHGFP-----------G------ADSVRACLNVAEEM-GREVFLLTE 125 (228)
T ss_dssp CCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESTT-----------C------HHHHHHHHHHHHHH-TCEEEEECC
T ss_pred CCeEEEEEeecccHhHHHHHHHHHHhCCCCEEEEeccC-----------C------HHHHHHHHHHHHhc-CCCeEEEEe
Confidence 455665553 3456777777787888999999998421 2 12344445544332 233554333
Q ss_pred CCCCCC-ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCC-CeEEEecCCCCH-
Q 017176 143 IGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD-LTFTLNGGINTV- 219 (376)
Q Consensus 143 ~g~~~~-~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~-ipVi~nGgI~s~- 219 (376)
..-.+. +.+.+....++++..+.|++.+.+++.. .+.+.++++..++ .++ ..+||.-.
T Consensus 126 ~s~~~~~~~~~~~~~~~a~~a~~~G~~GvV~~at~------------------~~e~~~ir~~~~~~~~i-v~PGI~~~g 186 (228)
T 3m47_A 126 MSHPGAEMFIQGAADEIARMGVDLGVKNYVGPSTR------------------PERLSRLREIIGQDSFL-ISPGVGAQG 186 (228)
T ss_dssp CCSGGGGTTHHHHHHHHHHHHHHTTCCEEECCSSC------------------HHHHHHHHHHHCSSSEE-EECC-----
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhCCcEEEECCCC------------------hHHHHHHHHhcCCCCEE-EecCcCcCC
Confidence 321111 1233445556677778999988765421 1233445444433 544 77777532
Q ss_pred HHHHHHHHcCcCeeEEchHHhhCCc
Q 017176 220 DEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 220 ~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
.+. ++++.|+|.+.+||+++..+.
T Consensus 187 ~~p-~~~~aGad~iVvGr~I~~a~d 210 (228)
T 3m47_A 187 GDP-GETLRFADAIIVGRSIYLADN 210 (228)
T ss_dssp -----CGGGTCSEEEECHHHHTSSC
T ss_pred CCH-hHHHcCCCEEEECHHHhCCCC
Confidence 255 677789999999999987655
|
| >3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.54 Score=43.40 Aligned_cols=147 Identities=12% Similarity=0.111 Sum_probs=91.8
Q ss_pred cCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEE
Q 017176 60 FSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVS 138 (376)
Q Consensus 60 ~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~ 138 (376)
+......+.+.|.+.+.++....++.+.+.|+|.||+=..+ +.. ..+.+.+.+.+..+|+.+ ++|+.
T Consensus 35 ~g~g~p~i~v~l~~~~~~e~~~~~~~~~~~gaD~VElRvD~----------l~~--~~~~~~v~~~l~~lr~~~~~~PiI 102 (276)
T 3o1n_A 35 VGEGAPKIIVSLMGKTITDVKSEALAYREADFDILEWRVDH----------FAN--VTTAESVLEAAGAIREIITDKPLL 102 (276)
T ss_dssp ETSSSCEEEEEECCSSHHHHHHHHHHHTTSCCSEEEEEGGG----------CTT--TTCHHHHHHHHHHHHHHCCSSCEE
T ss_pred eCCCCcEEEEEeCCCCHHHHHHHHHHHhhCCCCEEEEEecc----------ccc--cCcHHHHHHHHHHHHHhcCCCCEE
Confidence 33344457899999999999999998888899999995422 110 124578889999999887 78999
Q ss_pred EEecCCCCCC---ccHHHHHHHHHHHhhcCC-ccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHH---hhCCCCeEE
Q 017176 139 VKCRIGVDDH---DSYNQLCDFIYKVSSLSP-TRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL---RDFPDLTFT 211 (376)
Q Consensus 139 vKiR~g~~~~---~~~~~~~~~i~~~~e~~G-vd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~---~~~~~ipVi 211 (376)
+-+|.-++.. .+-++-.+++..++ +.| +|+|.|--... -+.+.+++ ++ .++.||
T Consensus 103 ~T~Rt~~eGG~~~~~~~~~~~ll~~~l-~~g~~dyIDvEl~~~-----------------~~~~~~l~~~a~~-~~~kvI 163 (276)
T 3o1n_A 103 FTFRSAKEGGEQALTTGQYIDLNRAAV-DSGLVDMIDLELFTG-----------------DDEVKATVGYAHQ-HNVAVI 163 (276)
T ss_dssp EECCBGGGTCSBCCCHHHHHHHHHHHH-HHTCCSEEEEEGGGC-----------------HHHHHHHHHHHHH-TTCEEE
T ss_pred EEEEEhhhCCCCCCCHHHHHHHHHHHH-hcCCCCEEEEECcCC-----------------HHHHHHHHHHHHh-CCCEEE
Confidence 9888733211 12223333444444 467 99999974321 12233332 22 267888
Q ss_pred Ee----cCCCCHHHHHHHH----HcCcCeeEEch
Q 017176 212 LN----GGINTVDEVNAAL----RKGAHHVMVGR 237 (376)
Q Consensus 212 ~n----GgI~s~~da~~~l----~~Gad~VmiGR 237 (376)
++ .+--+.+++.+.+ +.|||.|=|+.
T Consensus 164 ~S~Hdf~~tP~~~el~~~~~~~~~~GaDIvKia~ 197 (276)
T 3o1n_A 164 MSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAV 197 (276)
T ss_dssp EEEEESSCCCCHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred EEeecCCCCcCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 86 2333445554433 36888776543
|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A | Back alignment and structure |
|---|
Probab=95.59 E-value=0.31 Score=44.88 Aligned_cols=124 Identities=12% Similarity=0.050 Sum_probs=77.1
Q ss_pred ccCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccE
Q 017176 59 AFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPV 137 (376)
Q Consensus 59 ~~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv 137 (376)
+.+..+.|+ +-+...|. -.|++++++|||.| +-..+-. .+. .| |-..+.-..+.+..-+++|++.+ ..||
T Consensus 23 ~~~~~g~~i-~m~tayDa----~sA~l~e~aG~d~i-lvGdSl~-~~~-lG-~~dt~~vtldem~~h~~aV~r~~~~~~v 93 (275)
T 3vav_A 23 AMREAGEKI-AMLTCYDA----SFAALLDRANVDVQ-LIGDSLG-NVL-QG-QTTTLPVTLDDIAYHTACVARAQPRALI 93 (275)
T ss_dssp HHHHHTCCE-EEEECCSH----HHHHHHHHTTCSEE-EECTTHH-HHT-TC-CSSSTTCCHHHHHHHHHHHHHTCCSSEE
T ss_pred HHHHCCCcE-EEEeCcCH----HHHHHHHHcCCCEE-EECcHHH-HHH-cC-CCCCCccCHHHHHHHHHHHHhcCCCCCE
Confidence 333445554 34556664 47788999999999 4322211 111 11 22223345677888888888877 4789
Q ss_pred EEEecCC-CCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEe
Q 017176 138 SVKCRIG-VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN 213 (376)
Q Consensus 138 ~vKiR~g-~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~n 213 (376)
.+-+-.| +. +.++.++.+.++.+ +|+++|.+-++... .+.++.+.+. .|||++.
T Consensus 94 vaD~pfgsY~---s~~~a~~~a~rl~k-aGa~aVklEdg~~~----------------~~~i~~l~~~--GIpv~gH 148 (275)
T 3vav_A 94 VADLPFGTYG---TPADAFASAVKLMR-AGAQMVKFEGGEWL----------------AETVRFLVER--AVPVCAH 148 (275)
T ss_dssp EEECCTTSCS---SHHHHHHHHHHHHH-TTCSEEEEECCGGG----------------HHHHHHHHHT--TCCEEEE
T ss_pred EEecCCCCCC---CHHHHHHHHHHHHH-cCCCEEEECCchhH----------------HHHHHHHHHC--CCCEEEe
Confidence 9999885 62 34455555555554 69999999876311 4556666654 7899864
|
| >2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.13 Score=46.68 Aligned_cols=143 Identities=14% Similarity=0.150 Sum_probs=77.2
Q ss_pred CCCEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcc--cC--cc--
Q 017176 64 QHPIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN--TN--VP-- 136 (376)
Q Consensus 64 ~~p~~vQL~-g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~--~~--~p-- 136 (376)
+.++++-+. +..|+....+++.+.++|+|.|.+|.-. | .+.+.+.++.+++. .+ .|
T Consensus 55 ~~~v~lD~kl~Dip~t~~~~~~~~~~~Gad~vTvH~~~-----------g------~~~l~~~~~~~~~~~~~G~~~~~~ 117 (246)
T 2yyu_A 55 GHAVFLDLKLHDIPNTVKQAMKGLARVGADLVNVHAAG-----------G------RRMMEAAIEGLDAGTPSGRMRPRC 117 (246)
T ss_dssp TCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEGGG-----------C------HHHHHHHHHHHHHHSCSSSCCCEE
T ss_pred CCeEEEEeecccchHHHHHHHHHHHhcCCCEEEEECCC-----------C------HHHHHHHHHHHHhhcccCCcCCCE
Confidence 334444332 3567777777888889999999998511 2 12344566666541 22 24
Q ss_pred EEEEecCCCC--CC-------ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCC
Q 017176 137 VSVKCRIGVD--DH-------DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD 207 (376)
Q Consensus 137 v~vKiR~g~~--~~-------~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ 207 (376)
+.|......+ +. .+..+.+-.++....+.|.+.+.... .+ +.++++....
T Consensus 118 lav~~~Ts~~~~~l~~~~~~~~~~~d~Vl~ma~~~~~~G~~g~V~~~--------------------~e-i~~lr~~~~~ 176 (246)
T 2yyu_A 118 IAVTQLTSTDERMLHEELWISRPLVETVAHYAALAKESGLDGVVCSA--------------------NE-AAFIKERCGA 176 (246)
T ss_dssp EEESSCTTCCHHHHHHTSCCCSCHHHHHHHHHHHHHHHTCCEEECCH--------------------HH-HHHHHHHHCT
T ss_pred EEEEeCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCEEEeCH--------------------HH-HHHHHHhcCC
Confidence 3333222210 00 01112221112212335555443221 23 4444443333
Q ss_pred CeEEEecCCCCH-H---------HHHHHHHcCcCeeEEchHHhhCCc
Q 017176 208 LTFTLNGGINTV-D---------EVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 208 ipVi~nGgI~s~-~---------da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
.+++..|||..- . .+.++++.|+|.+.+||+++..+.
T Consensus 177 ~~i~V~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~I~~a~d 223 (246)
T 2yyu_A 177 SFLAVTPGIRFADDAAHDQVRVVTPRKARALGSDYIVIGRSLTRAAD 223 (246)
T ss_dssp TSEEEECCCCCCC-------CCCCHHHHHHHTCSEEEECHHHHTSSS
T ss_pred CCEEEeCCcCCCCCCcccccccCCHHHHHHcCCCEEEECHhhcCCCC
Confidence 458999999742 1 366777889999999999998655
|
| >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=95.47 E-value=0.16 Score=46.53 Aligned_cols=156 Identities=8% Similarity=0.040 Sum_probs=87.8
Q ss_pred CCChHHHHHHHHHhCCCcEEEecceeec-ccccccc---hhhhhhc----c-CCCCC-CEEEEec-CC--CHHHHHHHHH
Q 017176 18 DWTDNHYRTLARLISKHAWLYTEMLAAE-TIIYQQG---NLDRFLA----F-SPEQH-PIVLQIG-GS--NLDNLAKATE 84 (376)
Q Consensus 18 ~~td~~~r~~~~~~Gg~gl~~te~v~~~-~~~~~~~---~~~~~~~----~-~~~~~-p~~vQL~-g~--~~~~~~~aa~ 84 (376)
+.-|..+.+++.+.| ++.++++-.... .+.+.+. ..+.++. + ...+. ++++-+- |+ ++++..+.|.
T Consensus 23 tayD~~sA~l~e~aG-~d~ilvGdsl~~~~lG~~dt~~vtldemi~h~~aV~r~~~~~~vvaD~pfgsy~~~~~a~~~a~ 101 (264)
T 1m3u_A 23 TAYDYSFAKLFADEG-LNVMLVGDSLGMTVQGHDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFMAYATPEQAFENAA 101 (264)
T ss_dssp ECCSHHHHHHHHHHT-CCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCTTSEEEEECCTTSSSSHHHHHHHHH
T ss_pred eCcCHHHHHHHHHcC-CCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhhCCCCcEEEECCCCCcCCHHHHHHHHH
Confidence 566999999988886 888887632221 1111111 1112111 1 11233 3444432 21 7887777777
Q ss_pred HHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC---------CC----CCCccH
Q 017176 85 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI---------GV----DDHDSY 151 (376)
Q Consensus 85 ~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~---------g~----~~~~~~ 151 (376)
++.++|+++|.|--| +...+.|+++.+ .++||.--+-+ |+ .+....
T Consensus 102 rl~kaGa~aVklEgg--------------------~e~~~~I~al~~-agipV~gHiGLtPq~v~~~ggf~v~grt~~~a 160 (264)
T 1m3u_A 102 TVMRAGANMVKIEGG--------------------EWLVETVQMLTE-RAVPVCGHLGLTPQSVNIFGGYKVQGRGDEAG 160 (264)
T ss_dssp HHHHTTCSEEECCCS--------------------GGGHHHHHHHHH-TTCCEEEEEESCGGGHHHHTSSCCCCCSHHHH
T ss_pred HHHHcCCCEEEECCc--------------------HHHHHHHHHHHH-CCCCeEeeecCCceeecccCCeEEEeCCHHHH
Confidence 777799999987432 123445555544 36787622211 11 111223
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecC
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 215 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGg 215 (376)
+++++. ++.++++|++.|.+.+-. -+..+++.++. ++|+|+-|.
T Consensus 161 ~~~i~r-A~a~~eAGA~~ivlE~vp------------------~~~a~~it~~l-~iP~igIGa 204 (264)
T 1m3u_A 161 DQLLSD-ALALEAAGAQLLVLECVP------------------VELAKRITEAL-AIPVIGIGA 204 (264)
T ss_dssp HHHHHH-HHHHHHHTCCEEEEESCC------------------HHHHHHHHHHC-SSCEEEESS
T ss_pred HHHHHH-HHHHHHCCCcEEEEecCC------------------HHHHHHHHHhC-CCCEEEeCC
Confidence 555554 456788999999988632 23455666665 899998764
|
| >2pge_A MENC; OSBS, NYSGXRC, PSI-II, structural genomics, protein structure initiative; 1.60A {Desulfotalea psychrophila LSV54} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.25 Score=47.61 Aligned_cols=132 Identities=14% Similarity=0.095 Sum_probs=89.6
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC---ccEEEEec
Q 017176 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN---VPVSVKCR 142 (376)
Q Consensus 66 p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~---~pv~vKiR 142 (376)
|+-..+.+.+++.+.+.++.+.+.||..+-+..|. .+++.-.+.++++++.++ +.+.+-..
T Consensus 153 p~~~~i~~~~~e~~~~~a~~~~~~G~~~~K~Kvg~----------------~~~~~d~~~v~avr~~~g~~~~~l~vDaN 216 (377)
T 2pge_A 153 PVNGLIWMGEAAFMQEQIEAKLAEGYGCLKLKIGA----------------IDFDKECALLAGIRESFSPQQLEIRVDAN 216 (377)
T ss_dssp EBCEEECCCCHHHHHHHHHHHHHTTCSEEEEEC-------------------CHHHHHHHHHHHHHHSCTTTCEEEEECT
T ss_pred EEeEEecCCCHHHHHHHHHHHHHHhhhhheeecCC----------------CChHHHHHHHHHHHHHcCCCCceEEEECC
Confidence 33334556688989888888888899999886432 246677788888888764 55666655
Q ss_pred CCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHH-
Q 017176 143 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE- 221 (376)
Q Consensus 143 ~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~d- 221 (376)
-+|+. + +.++++ +.+++.++.+|. . .+++-+++..+++.+.. ++||.+.=.+.+..+
T Consensus 217 ~~~~~-~---~a~~~~-~~l~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~ 274 (377)
T 2pge_A 217 GAFSP-A---NAPQRL-KRLSQFHLHSIE----Q------------PIRQHQWSEMAALCANS-PLAIALDEELIGLGAE 274 (377)
T ss_dssp TBBCT-T---THHHHH-HHHHTTCCSEEE----C------------CBCSSCHHHHHHHHHHC-SSCEEESGGGTTCCTH
T ss_pred CCCCH-H---HHHHHH-HHHhcCCCcEEE----c------------cCCcccHHHHHHHHhhC-CCcEEECCccCCcchH
Confidence 56654 2 333333 455678887765 1 11223477777777765 899999988988888
Q ss_pred -HHHHHH-cCcCeeEE
Q 017176 222 -VNAALR-KGAHHVMV 235 (376)
Q Consensus 222 -a~~~l~-~Gad~Vmi 235 (376)
+.++++ ..+|.|++
T Consensus 275 ~~~~~i~~~a~d~i~i 290 (377)
T 2pge_A 275 QRSAMLDAIRPQYIIL 290 (377)
T ss_dssp HHHHHHHHHCCSEEEE
T ss_pred HHHHHHHhCCCCEEEE
Confidence 668887 67898877
|
| >1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=95.37 E-value=0.16 Score=49.28 Aligned_cols=120 Identities=11% Similarity=0.151 Sum_probs=81.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHH
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~ 152 (376)
.+++++.+.++.+.+.||+.+-+..| | ..+ .+.+++||+.+ ++.+.+-..-+|+. +
T Consensus 160 ~~~e~~~~~a~~~~~~G~~~~KiKvg-~--------------~~d----~~~v~avr~a~~~~~l~vDaN~~~~~-~--- 216 (393)
T 1wuf_A 160 QNVETLLQLVNQYVDQGYERVKLKIA-P--------------NKD----IQFVEAVRKSFPKLSLMADANSAYNR-E--- 216 (393)
T ss_dssp SCHHHHHHHHHHHHHHTCCEEEEECB-T--------------TBS----HHHHHHHHTTCTTSEEEEECTTCCCG-G---
T ss_pred CCHHHHHHHHHHHHHHhhHhheeccC-h--------------HHH----HHHHHHHHHHcCCCEEEEECCCCCCH-H---
Confidence 46888988888887889999998653 1 012 35577888776 34555555555643 2
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcC
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAH 231 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad 231 (376)
+. ++ .+.+++.++.+|. . .+++-+++..+++.+.. ++||.+.-.+.+.+++.++++ ..+|
T Consensus 217 ~a-~~-~~~l~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~i~~~a~d 277 (393)
T 1wuf_A 217 DF-LL-LKELDQYDLEMIE----Q------------PFGTKDFVDHAWLQKQL-KTRICLDENIRSVKDVEQAHSIGSCR 277 (393)
T ss_dssp GH-HH-HHTTGGGTCSEEE----C------------CSCSSCSHHHHHHHTTC-SSEEEECTTCCSHHHHHHHHHHTCCS
T ss_pred HH-HH-HHHHHhCCCeEEE----C------------CCCCcCHHHHHHHHHhC-CCCEEECCCcCCHHHHHHHHHhCCCC
Confidence 33 33 3456778888776 1 11222356667776654 899999999999999999998 4589
Q ss_pred eeEE
Q 017176 232 HVMV 235 (376)
Q Consensus 232 ~Vmi 235 (376)
.|++
T Consensus 278 ~v~i 281 (393)
T 1wuf_A 278 AINL 281 (393)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9887
|
| >2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.34 Score=44.22 Aligned_cols=190 Identities=14% Similarity=0.086 Sum_probs=112.8
Q ss_pred CCCCChHHHHHHHHHhCCCcEEEecc--eeecccccccc---hhhhhhc----c-CCCCCCEEEEe---cCCCHHHHHHH
Q 017176 16 MMDWTDNHYRTLARLISKHAWLYTEM--LAAETIIYQQG---NLDRFLA----F-SPEQHPIVLQI---GGSNLDNLAKA 82 (376)
Q Consensus 16 M~~~td~~~r~~~~~~Gg~gl~~te~--v~~~~~~~~~~---~~~~~~~----~-~~~~~p~~vQL---~g~~~~~~~~a 82 (376)
|.+.-|....+++.+.| +..+++.- ++ ..+.+.+. ....++. + ...+.|+++-+ +|+.+ .+.
T Consensus 24 ~~~ayD~~sA~~~~~aG-~dai~vg~~s~a-~~~G~pD~~~vt~~em~~~~~~I~r~~~~pviaD~~~Gyg~~~---~~~ 98 (255)
T 2qiw_A 24 LPTVWDTWSAGLVEEAG-FSGLTIGSHPVA-DATGSSDGENMNFADYMAVVKKITSAVSIPVSVDVESGYGLSP---ADL 98 (255)
T ss_dssp CCEESSHHHHHHHHHTT-CSCEEECHHHHH-HHTTCCTTTCSCHHHHHHHHHHHHHHCSSCEEEECTTCTTCCH---HHH
T ss_pred EecCcCHHHHHHHHHcC-CCEEEEChHHHH-HhCCCCCCCCcCHHHHHHHHHHHHhcCCCCEEeccCCCcCcHH---HHH
Confidence 44677888988888876 77777663 33 12222221 0111110 0 11236777765 45556 677
Q ss_pred HHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc---CccEEEEecCC-----CCC-CccHHH
Q 017176 83 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT---NVPVSVKCRIG-----VDD-HDSYNQ 153 (376)
Q Consensus 83 a~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~---~~pv~vKiR~g-----~~~-~~~~~~ 153 (376)
++++.++|+++|.|--+... . |. -+-..+...+.|+++++.. ++|+.|--|.+ ..+ .+..++
T Consensus 99 ~~~l~~aGa~gv~iEd~~~~-------~-~k-~l~~~~e~~~~I~a~~~a~~~~g~~~~v~aRtd~~~~g~~~~~~~~~~ 169 (255)
T 2qiw_A 99 IAQILEAGAVGINVEDVVHS-------E-GK-RVREAQEHADYIAAARQAADVAGVDVVINGRTDAVKLGADVFEDPMVE 169 (255)
T ss_dssp HHHHHHTTCCEEEECSEEGG-------G-TT-EECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECHHHHCTTTSSSHHHH
T ss_pred HHHHHHcCCcEEEECCCCCC-------C-CC-cccCHHHHHHHHHHHHHHHHhcCCCeEEEEEechhhccCCcchHHHHH
Confidence 77777899999999755311 0 22 2335566677777776652 57865555543 221 123667
Q ss_pred HHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEe--cCCCCH-HHHHHHHHcCc
Q 017176 154 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN--GGINTV-DEVNAALRKGA 230 (376)
Q Consensus 154 ~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~n--GgI~s~-~da~~~l~~Ga 230 (376)
+++. ++.++++|+|.|.+++-.. .+.+.++.+++ ++|+-.+ ++-.++ -+..++-+.|+
T Consensus 170 ai~r-a~a~~eAGAd~i~~e~~~~-----------------~~~~~~i~~~~-~~P~n~~~~~~~~~p~~~~~eL~~lGv 230 (255)
T 2qiw_A 170 AIKR-IKLMEQAGARSVYPVGLST-----------------AEQVERLVDAV-SVPVNITAHPVDGHGAGDLATLAGLGV 230 (255)
T ss_dssp HHHH-HHHHHHHTCSEEEECCCCS-----------------HHHHHHHHTTC-SSCBEEECBTTTBBTTBCHHHHHHTTC
T ss_pred HHHH-HHHHHHcCCcEEEEcCCCC-----------------HHHHHHHHHhC-CCCEEEEecCCCCCCCCCHHHHHHcCC
Confidence 6665 3566789999999987321 35566777765 7887666 332111 23445556899
Q ss_pred CeeEEchH
Q 017176 231 HHVMVGRA 238 (376)
Q Consensus 231 d~VmiGRa 238 (376)
..|..|-.
T Consensus 231 ~~v~~~~~ 238 (255)
T 2qiw_A 231 RRVTFGPL 238 (255)
T ss_dssp CEEECTTH
T ss_pred CEEEEHHH
Confidence 99998877
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=95.26 E-value=0.14 Score=47.92 Aligned_cols=101 Identities=16% Similarity=0.147 Sum_probs=62.3
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecC-CCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe
Q 017176 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNC-GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 141 (376)
Q Consensus 63 ~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~-gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 141 (376)
.+.|++ =+...|. -.|++++++|||.|=+.. +.-.. .. | |-....-..+.+...++.|.+.++.||++-+
T Consensus 20 ~~~~i~-~~~a~D~----~sA~l~e~aGf~ai~vs~~s~a~~-~~--G-~pD~~~vt~~em~~~~~~I~r~~~~PviaD~ 90 (298)
T 3eoo_A 20 AEQPLQ-VVGAITA----YAAKMAEAVGFKAVYLSGGGVAAN-SL--G-IPDLGISTMDDVLVDANRITNATNLPLLVDI 90 (298)
T ss_dssp HSSSEE-EEECSSH----HHHHHHHHHTCSCEEECHHHHHHH-TT--C-CCSSSCCCHHHHHHHHHHHHHHCCSCEEEEC
T ss_pred CCCcEE-EecCCCH----HHHHHHHHcCCCEEEECcHHHHHH-hc--C-CCCCCCCCHHHHHHHHHHHHhhcCCeEEEEC
Confidence 344443 2445554 366778889999998753 11100 01 1 1111123467777888888888899999999
Q ss_pred cCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCc
Q 017176 142 RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK 176 (376)
Q Consensus 142 R~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~ 176 (376)
-.|+.+ .+.+.+.+. .++++|+++|++-+..
T Consensus 91 d~Gyg~---~~~v~~~v~-~l~~aGaagv~iEDq~ 121 (298)
T 3eoo_A 91 DTGWGG---AFNIARTIR-SFIKAGVGAVHLEDQV 121 (298)
T ss_dssp TTCSSS---HHHHHHHHH-HHHHTTCSEEEEECBC
T ss_pred CCCCCC---HHHHHHHHH-HHHHhCCeEEEECCCC
Confidence 999753 233344333 3456999999998765
|
| >1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A | Back alignment and structure |
|---|
Probab=95.21 E-value=0.1 Score=47.36 Aligned_cols=142 Identities=15% Similarity=0.146 Sum_probs=77.7
Q ss_pred CCEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC-cc--EEEE
Q 017176 65 HPIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VP--VSVK 140 (376)
Q Consensus 65 ~p~~vQL~-g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~-~p--v~vK 140 (376)
.++++-+. +..|+....+++.+.++|+|.|.+|.-. | .+-+...++.+++.-. .| +.|.
T Consensus 66 ~~v~lD~kl~Dip~t~~~~i~~~~~~Gad~vTvH~~~-----------g------~~~l~~~~~~~~~~G~~~~~~l~v~ 128 (245)
T 1eix_A 66 FDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASG-----------G------ARMMTAAREALVPFGKDAPLLIAVT 128 (245)
T ss_dssp CCEEEEEEECSCHHHHHHHHHHHHHHTCSEEEEBGGG-----------C------HHHHHHHHHTTGGGGGGCCEEEEEC
T ss_pred CcEEEEeeccccHHHHHHHHHHHHhCCCCEEEEeccC-----------C------HHHHHHHHHHHHHcCCCCCcEEEEE
Confidence 34444332 3567777777888888999999998521 2 1224455665554211 23 1232
Q ss_pred ecCCCCC--C------ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE
Q 017176 141 CRIGVDD--H------DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL 212 (376)
Q Consensus 141 iR~g~~~--~------~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~ 212 (376)
.....+. . .+..+.+-.++....+.|.+.+.... ++ +.++++...+.+++.
T Consensus 129 ~~ts~~~~~l~~~~~~~~~~d~Vl~ma~~~~~~G~~g~V~~~--------------------~e-i~~lr~~~~~~~i~v 187 (245)
T 1eix_A 129 VLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSA--------------------QE-AVRFKQVFGQEFKLV 187 (245)
T ss_dssp SCTTCCHHHHHTTTCCSCHHHHHHHHHHHHHHTTCSEEECCG--------------------GG-HHHHHHHHCSSSEEE
T ss_pred ecCCCCHHHHHHhccCCCHHHHHHHHHHHHHHcCCCeEEeCH--------------------HH-HHHHHHhcCCCCEEE
Confidence 2222110 0 01122222222223446666544322 12 334443333468999
Q ss_pred ecCCCCHH----------HHHHHHHcCcCeeEEchHHhhCCc
Q 017176 213 NGGINTVD----------EVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 213 nGgI~s~~----------da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
.|||..-. .+.++++.|+|.+.+||+++..+.
T Consensus 188 ~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~I~~a~d 229 (245)
T 1eix_A 188 TPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVD 229 (245)
T ss_dssp ECCBCCTTCCCTTCCSCBCHHHHHHTTCSEEEECHHHHTSSS
T ss_pred ECCcCCCCCCccchhccCCHHHHHHcCCCEEEECHHHcCCCC
Confidence 99997431 467778899999999999998665
|
| >1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1 | Back alignment and structure |
|---|
Probab=95.20 E-value=0.025 Score=49.22 Aligned_cols=43 Identities=16% Similarity=0.185 Sum_probs=35.8
Q ss_pred HHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017176 200 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 200 ~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
+++++..++|||+.|+|+|.+++.+ ++.|||+|.-++--|.+-
T Consensus 142 ~~I~~v~~~PiIaGGlI~t~edv~~-l~aGA~aIsTs~~~LW~~ 184 (188)
T 1vkf_A 142 KVARKIPGRTVIAAGLVETEEEARE-ILKHVSAISTSSRILWKM 184 (188)
T ss_dssp HHHTTSTTSEEEEESCCCSHHHHHH-HTTTSSEEEECCHHHHTC
T ss_pred HHHHHhcCCCEEEECCcCCHHHHHH-HHCCCeEEEeCCHHHhCC
Confidence 3344445899999999999999999 999999999998776543
|
| >1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.88 Score=40.95 Aligned_cols=146 Identities=11% Similarity=0.108 Sum_probs=84.1
Q ss_pred CEEEEecC-CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecC
Q 017176 66 PIVLQIGG-SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRI 143 (376)
Q Consensus 66 p~~vQL~g-~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~ 143 (376)
.+++-|.+ .+.+++.+.++.+.+.|+|.||+=..+ +.. .+.+.+.+.++.+|+.. ++|+.+-+|.
T Consensus 5 ~Icvpi~~~~~~~e~~~~~~~~~~~~~D~vElRvD~----------l~~---~~~~~v~~~~~~lr~~~~~~PiI~T~R~ 71 (238)
T 1sfl_A 5 EVVATITPQLSIEETLIQKINHRIDAIDVLELRIDQ----------FEN---VTVDQVAEMITKLKVMQDSFKLLVTYRT 71 (238)
T ss_dssp EEEEEECCCC---CHHHHHHHHTTTTCSEEEEECTT----------STT---CCHHHHHHHHHHHC---CCSEEEEECCB
T ss_pred eEEEEecCCCCHHHHHHHHHHhhhcCCCEEEEEecc----------ccc---CCHHHHHHHHHHHHHhccCCCEEEEeec
Confidence 47788899 888888888888888899999995432 211 14678899999999877 7899998887
Q ss_pred CCCCC---ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecC----C
Q 017176 144 GVDDH---DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG----I 216 (376)
Q Consensus 144 g~~~~---~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGg----I 216 (376)
-++.. .+-++-.+.+..+++..++|+|.|.-.... . .-....+.+..+.. ++.||++=- -
T Consensus 72 ~~eGG~~~~~~~~~~~ll~~~~~~~~~d~iDvEl~~~~--~----------~~~~~~l~~~~~~~-~~kvI~S~Hdf~~t 138 (238)
T 1sfl_A 72 KLQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADI--D----------IEKHQRIITHLQQY-NKEVIISHHNFEST 138 (238)
T ss_dssp GGGTSCBCCCHHHHHHHHHHGGGCTTCCEEEEECCTTS--C----------HHHHHHHHHHHHHT-TCEEEEEEEESSCC
T ss_pred cccCCCCCCCHHHHHHHHHHHHHhCCCCEEEEEccCCC--C----------hHHHHHHHHHHHhc-CCEEEEEecCCCCC
Confidence 44321 122333444555554447999999753200 0 00011121222222 677887732 2
Q ss_pred CCHHHHHHHH----HcCcCeeEEch
Q 017176 217 NTVDEVNAAL----RKGAHHVMVGR 237 (376)
Q Consensus 217 ~s~~da~~~l----~~Gad~VmiGR 237 (376)
-+.+++.+.+ +.|||.|=|+.
T Consensus 139 p~~~el~~~~~~~~~~gaDivKia~ 163 (238)
T 1sfl_A 139 PPLDELQFIFFKMQKFNPEYVKLAV 163 (238)
T ss_dssp CCHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 3345554443 37899776644
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.076 Score=50.54 Aligned_cols=93 Identities=16% Similarity=0.224 Sum_probs=59.9
Q ss_pred HHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCC--ccEEEEccCccccCCCCCCCCCCCCcccHHHH
Q 017176 121 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSP--TRHFIIHSRKALLNGISPAENRTIPPLKYEYY 198 (376)
Q Consensus 121 ~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~G--vd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v 198 (376)
...+.++.+++ .+.|+++.+ |... +.+ +. ++.+.+.| +++|.++.. .|. +...++.+
T Consensus 82 ~~~~~i~~~~~-~g~~v~v~~--g~~~-~~~----~~-a~~~~~~g~~~~~i~i~~~----~G~--------~~~~~~~i 140 (336)
T 1ypf_A 82 KRISFIRDMQS-RGLIASISV--GVKE-DEY----EF-VQQLAAEHLTPEYITIDIA----HGH--------SNAVINMI 140 (336)
T ss_dssp GHHHHHHHHHH-TTCCCEEEE--CCSH-HHH----HH-HHHHHHTTCCCSEEEEECS----SCC--------SHHHHHHH
T ss_pred HHHHHHHHHHh-cCCeEEEeC--CCCH-HHH----HH-HHHHHhcCCCCCEEEEECC----CCC--------cHHHHHHH
Confidence 34555666554 256777763 4332 222 22 22344678 999888642 121 22347788
Q ss_pred HHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEE
Q 017176 199 YALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 235 (376)
Q Consensus 199 ~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vmi 235 (376)
..+++..+.+||+ .|.|.+.++++.+.+.|||+|.+
T Consensus 141 ~~lr~~~~~~~vi-~G~v~s~e~A~~a~~aGad~Ivv 176 (336)
T 1ypf_A 141 QHIKKHLPESFVI-AGNVGTPEAVRELENAGADATKV 176 (336)
T ss_dssp HHHHHHCTTSEEE-EEEECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHhCCCCEEE-ECCcCCHHHHHHHHHcCCCEEEE
Confidence 8888876445555 57799999999999999999999
|
| >1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.00A {Thermotoga maritima} SCOP: c.1.2.3 | Back alignment and structure |
|---|
Probab=95.08 E-value=0.22 Score=44.22 Aligned_cols=134 Identities=14% Similarity=0.129 Sum_probs=75.5
Q ss_pred CCCCEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe
Q 017176 63 EQHPIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 141 (376)
Q Consensus 63 ~~~p~~vQL~-g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 141 (376)
.+.++++=+- +--+.....+++.+.++|+|.|.+|. |++ .+-+...++... ..-+.|-.
T Consensus 57 ~~~~v~lD~K~~DI~nT~~~~v~~~~~~GaD~vTvh~------------~~G-----~~~l~~~~~~~~---~~~~~V~~ 116 (213)
T 1vqt_A 57 RNLKIILDLKFCDIPSTVERSIKSWDHPAIIGFTVHS------------CAG-----YESVERALSATD---KHVFVVVK 116 (213)
T ss_dssp TTCEEEEEEEECSCHHHHHHHHHHHCCTTEEEEEEEG------------GGC-----HHHHHHHHHHCS---SEEEEECC
T ss_pred CCCCEEEEeecccCchHHHHHHHHHHHCCCCEEEEec------------cCC-----HHHHHHHHHhcC---CCeEEEEE
Confidence 3566776663 33456667777888889999999984 122 122233333221 11233322
Q ss_pred cCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHH-
Q 017176 142 RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVD- 220 (376)
Q Consensus 142 R~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~- 220 (376)
-.+.+. . +.+.+..++++ .+.|++ +.+++ +.+.++++.. ..+ +..+||.-..
T Consensus 117 lts~~~-~-l~~~v~~~a~~-~e~G~d-vV~~~---------------------~~~~~ir~~~-~~~-~v~pGI~~~~~ 169 (213)
T 1vqt_A 117 LTSMEG-S-LEDYMDRIEKL-NKLGCD-FVLPG---------------------PWAKALREKI-KGK-ILVPGIRMEVK 169 (213)
T ss_dssp CTTSCC-C-HHHHHHHHHHH-HHHTCE-EECCH---------------------HHHHHHTTTC-CSC-EEECCBC----
T ss_pred eCCCCH-H-HHHHHHHHHHH-hcCCCE-EEEcH---------------------HHHHHHHHHC-CCC-EEECCCCCCCC
Confidence 222232 1 32333445566 778999 54432 1223444433 346 7888885332
Q ss_pred --H------HHHHHHcCcCeeEEchHHhhCCc
Q 017176 221 --E------VNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 221 --d------a~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
| ..+ ++.|+|++.+||+++..+.
T Consensus 170 ~~dq~rv~t~~~-i~aGad~iVvGR~I~~a~d 200 (213)
T 1vqt_A 170 ADDQKDVVTLEE-MKGIANFAVLGREIYLSEN 200 (213)
T ss_dssp -----CCBCHHH-HTTTCSEEEESHHHHTSSC
T ss_pred ccchhhcCCHHH-HHCCCCEEEEChhhcCCCC
Confidence 2 567 7899999999999997766
|
| >1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=95.04 E-value=1.2 Score=39.85 Aligned_cols=138 Identities=12% Similarity=0.078 Sum_probs=78.3
Q ss_pred HHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHh
Q 017176 83 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVS 162 (376)
Q Consensus 83 a~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~ 162 (376)
+..++++|+|+|-|+.+. |+-.+| .+.+.++...+ .+.-+.|=+ .+ ..+.. .+
T Consensus 81 ~~~l~~~Ga~~Vllghse------RR~~~~--------e~~~k~~~A~~-~GL~~ivcV----ge---~~e~~-----~~ 133 (225)
T 1hg3_A 81 PEAVKEAGAVGTLLNHSE------NRMILA--------DLEAAIRRAEE-VGLMTMVCS----NN---PAVSA-----AV 133 (225)
T ss_dssp HHHHHHTTCCEEEESCGG------GCCBHH--------HHHHHHHHHHH-HTCEEEEEE----SS---HHHHH-----HH
T ss_pred HHHHHHcCCCEEEECcch------hcCCHH--------HHHHHHHHHHH-CCCEEEEEe----CC---HHHHH-----HH
Confidence 456788999999997432 222223 13444444332 233322211 11 22221 12
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017176 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
...+.+.|-+-+|...=.|.+-. ...+-..+.+.++++.. .+++|+.-|+|.+.+++..+...|+||+.||++++.
T Consensus 134 ~~~~~~iIayep~waiGtG~~v~---t~~~d~~~~~~~~ir~~~~~~~ilyggsV~~~n~~~~~~~~~vDG~LVG~a~l~ 210 (225)
T 1hg3_A 134 AALNPDYVAVEPPELIGTGIPVS---KAKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTK 210 (225)
T ss_dssp HTTCCSEEEECCTTTTTTSCCTT---TSCTHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred hcCCCCEEEEeChhhhccCCCCC---CCChhHHHHHHHHHHhccCCCEEEEeCCCCcHHHHHHHHhCCCCEEEeCHHHHC
Confidence 34677788888776421220000 00111123333334433 368999999999999999998899999999999998
Q ss_pred CCchhhHhhh
Q 017176 242 NPWYTLGHVD 251 (376)
Q Consensus 242 ~P~lf~~~~~ 251 (376)
-+++ ...++
T Consensus 211 a~~~-~~~i~ 219 (225)
T 1hg3_A 211 AKDP-EKAIW 219 (225)
T ss_dssp CSSH-HHHHH
T ss_pred CcCH-HHHHH
Confidence 8774 44433
|
| >4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=1.8 Score=39.34 Aligned_cols=99 Identities=16% Similarity=0.137 Sum_probs=68.9
Q ss_pred CCC-EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEe
Q 017176 64 QHP-IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKC 141 (376)
Q Consensus 64 ~~p-~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKi 141 (376)
+.| +++-|.+.+.+++.+.++.+.+.|+|.||+=..+=. + ..+.+.+.+.+..+++.. ++|+.+-+
T Consensus 18 g~PkIcvpl~~~t~~e~l~~a~~~~~~~aD~vElR~D~l~------~------~~~~~~v~~~l~~lr~~~~~lPiI~T~ 85 (258)
T 4h3d_A 18 GRPKICVPIIGKNKKDIIKEAKELKDACLDIIEWRVDFFE------N------VENIKEVKEVLYELRSYIHDIPLLFTF 85 (258)
T ss_dssp SSCEEEEEECCSSHHHHHHHHHHHTTSSCSEEEEEGGGCT------T------TTCHHHHHHHHHHHHHHCTTSCEEEEC
T ss_pred CCCEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEeecccc------c------cCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 444 789999999999999999999999999999543210 0 135778999999998876 68999999
Q ss_pred cCCCCCC---ccHHHHHHHHHHHhhcCCccEEEEcc
Q 017176 142 RIGVDDH---DSYNQLCDFIYKVSSLSPTRHFIIHS 174 (376)
Q Consensus 142 R~g~~~~---~~~~~~~~~i~~~~e~~Gvd~I~vh~ 174 (376)
|.-++.. .+-++-...+..+++..++|+|.|.-
T Consensus 86 Rt~~EGG~~~~~~~~~~~ll~~~~~~~~~d~iDvEl 121 (258)
T 4h3d_A 86 RSVVEGGEKLISRDYYTTLNKEISNTGLVDLIDVEL 121 (258)
T ss_dssp CCGGGTCSCCCCHHHHHHHHHHHHHTTCCSEEEEEG
T ss_pred echhhCCCCCCCHHHHHHHHHHHHhcCCchhhHHhh
Confidence 9744321 12222233334444444599999864
|
| >1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3 | Back alignment and structure |
|---|
Probab=94.98 E-value=0.46 Score=42.74 Aligned_cols=143 Identities=16% Similarity=0.153 Sum_probs=79.6
Q ss_pred CCCEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcc--cCc--c--
Q 017176 64 QHPIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN--TNV--P-- 136 (376)
Q Consensus 64 ~~p~~vQL~-g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~--~~~--p-- 136 (376)
+.++++-+. +..|+....+++.+.++|+|.|.+|.-. | .+.+...++.+++. .+. |
T Consensus 54 ~~~v~lD~kl~Dip~t~~~~~~~~~~~Gad~vtvH~~~-----------g------~~~l~~~~~~~~~~~~~g~~~~~~ 116 (239)
T 1dbt_A 54 NCELFLDLKLHDIPTTVNKAMKRLASLGVDLVNVHAAG-----------G------KKMMQAALEGLEEGTPAGKKRPSL 116 (239)
T ss_dssp TCEEEEEEEECSCHHHHHHHHHHHHTTTCSEEEEEGGG-----------C------HHHHHHHHHHHHHHSCTTSCCCEE
T ss_pred CCcEEEEeccccchHHHHHHHHHHHhcCCCEEEEeCcC-----------C------HHHHHHHHHHHHhhhccCCCCccE
Confidence 344444332 3567777777888889999999998511 2 12234555555543 132 3
Q ss_pred EEEEecCCCC--CC-----c--cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCC
Q 017176 137 VSVKCRIGVD--DH-----D--SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD 207 (376)
Q Consensus 137 v~vKiR~g~~--~~-----~--~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ 207 (376)
+.|-...+.+ +. - +..+.+..++....+.|.+.+.... . .+.++++...+
T Consensus 117 ~~V~~~ts~~~~~l~~~~~~~~~~~d~Vl~ma~~~~~~G~~g~v~~~-~--------------------~i~~lr~~~~~ 175 (239)
T 1dbt_A 117 IAVTQLTSTSEQIMKDELLIEKSLIDTVVHYSKQAEESGLDGVVCSV-H--------------------EAKAIYQAVSP 175 (239)
T ss_dssp EEECSCTTCCHHHHHHTSCBCSCHHHHHHHHHHHHHHTTCSEEECCG-G--------------------GHHHHTTTSCT
T ss_pred EEEEEcCCCCHHHHHHHhccCCCHHHHHHHHHHHHHHhCCCEEEECH-H--------------------HHHHHHHhcCC
Confidence 4444333321 00 0 1222222222223456766655443 1 12233333334
Q ss_pred CeEEEecCCCCHHH----------HHHHHHcCcCeeEEchHHhhCCc
Q 017176 208 LTFTLNGGINTVDE----------VNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 208 ipVi~nGgI~s~~d----------a~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
.+++..|||.--.. ..++++.|+|.+.+||+++..|.
T Consensus 176 ~~i~v~gGI~~~~~~~~dq~rv~tp~~a~~aGad~iVvGr~I~~a~d 222 (239)
T 1dbt_A 176 SFLTVTPGIRMSEDAANDQVRVATPAIAREKGSSAIVVGRSITKAED 222 (239)
T ss_dssp TCEEEECCBCCTTSCCTTCSSCBCHHHHHHTTCSEEEECHHHHTSSC
T ss_pred CcEEEeCCcCCCCCCccceeccCCHHHHHHcCCCEEEEChhhcCCCC
Confidence 68999999975332 26777899999999999998665
|
| >4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=94.98 E-value=1.3 Score=39.56 Aligned_cols=178 Identities=8% Similarity=0.040 Sum_probs=94.8
Q ss_pred CCCChHHHHHHHHHhCCCcEEEecceeeccccccc--chhhhhhccCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEE
Q 017176 17 MDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQ--GNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEI 94 (376)
Q Consensus 17 ~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~--~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~I 94 (376)
+|+|+.+=..++ +.| ++.+ +++....--+.- ....++.... ...++.+.++. ++++ .+..+++.+.|.|
T Consensus 26 CGit~~ed~~a~-~~g-aD~i--GfIf~~~SpR~V~~~~A~~i~~~~-~~~~~~v~v~v-~~~e---i~~~i~~~~ld~v 96 (228)
T 4aaj_A 26 CGIKSLEELEIV-EKH-ADAT--GVVVNSNSKRRIPLEKAREIIENS-AIPVFLVSTMV-GFSE---WAMAIERTGAQYI 96 (228)
T ss_dssp CCCCSHHHHHHH-HTT-CSEE--EEECSSSSTTBCCHHHHHHHHHHC-SSCEEEEECCC-CHHH---HHHHHHHHTCSEE
T ss_pred CCCCcHHHHHHH-HcC-CCEE--EEEecCCCCCCCCHHHHHHHHHhh-CCCCEEEeccC-chHH---HHHHHHhccchhe
Confidence 677776654443 555 6654 454432111111 1112222211 23345566654 3543 4455677789999
Q ss_pred EecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEcc
Q 017176 95 NLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS 174 (376)
Q Consensus 95 eiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~ 174 (376)
.||.. ..|+. ++.+++..++|+.=-+|+........++....+..+ ....+|++-+..
T Consensus 97 QLHG~-----------------E~~~~----~~~l~~~~~~~viKa~~v~~~~~~~~~~~~~~~~~~-~~~~~d~~LlDs 154 (228)
T 4aaj_A 97 QVHSN-----------------ALPQT----IDTLKKEFGVFVMKAFRVPTISKNPEEDANRLLSEI-SRYNADMVLLDT 154 (228)
T ss_dssp EECSC-----------------CCHHH----HHHHHHHHCCEEEEEEECCSSCSCHHHHHHHHHHHH-HHSCCSEEEEEC
T ss_pred ecccc-----------------cCHHH----HHHHhhccCceEEEEEEecccccchhhhHHHHHHHH-hccCCCEEccCC
Confidence 99841 23443 334444456676544555322211122222222222 346789888764
Q ss_pred CccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHh
Q 017176 175 RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAY 240 (376)
Q Consensus 175 r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l 240 (376)
. +|.+ ...+|+.+..+.. +.|+|..||+ +++.+.++++ .+..+|=+..|.=
T Consensus 155 ~----GGtG-------~~fDW~~~~~~~~---~~p~iLAGGL-~peNV~~Ai~~~~P~gVDVsSGVE 206 (228)
T 4aaj_A 155 G----AGSG-------KLHDLRVSSLVAR---KIPVIVAGGL-NAENVEEVIKVVKPYGVDVSSGVE 206 (228)
T ss_dssp ------------------CCCHHHHHHHH---HSCEEEESSC-CTTTHHHHHHHHCCSEEEESGGGE
T ss_pred C----CCCc-------CcCChHHHHHhhh---cCCeEEECCC-CHHHHHHHHHHhCCCEEEeCCCCC
Confidence 2 2221 1123776666544 4689999999 7888888887 7888998888874
|
| >1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=94.95 E-value=0.35 Score=44.71 Aligned_cols=155 Identities=15% Similarity=0.129 Sum_probs=82.4
Q ss_pred CCChHHHHHHHHHhCCCcEEEecceeec-ccccccc---hhhhhhc----c-CCCCCCEEE-Ee-cCC---CHHHHHH-H
Q 017176 18 DWTDNHYRTLARLISKHAWLYTEMLAAE-TIIYQQG---NLDRFLA----F-SPEQHPIVL-QI-GGS---NLDNLAK-A 82 (376)
Q Consensus 18 ~~td~~~r~~~~~~Gg~gl~~te~v~~~-~~~~~~~---~~~~~~~----~-~~~~~p~~v-QL-~g~---~~~~~~~-a 82 (376)
+.-|..+.+++.+.| ++.+.++-.... .+.+.+. ..+.++. + .....|+++ -+ ||+ ++++..+ +
T Consensus 40 tayDa~sA~l~e~aG-~d~ilvGdSl~~~~lG~~dt~~vTldemi~h~~aV~r~~~~~~vvaD~pfgsy~~s~~~a~~na 118 (281)
T 1oy0_A 40 TAYDYSTARIFDEAG-IPVLLVGDSAANVVYGYDTTVPISIDELIPLVRGVVRGAPHALVVADLPFGSYEAGPTAALAAA 118 (281)
T ss_dssp ECCSHHHHHHHHTTT-CCEEEECTTHHHHTTCCSSSSSCCGGGTHHHHHHHHHHCTTSEEEEECCTTSSTTCHHHHHHHH
T ss_pred eCcCHHHHHHHHHcC-CCEEEECHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCCCeEEEECCCCcccCCHHHHHHHH
Confidence 456778888777775 777776532221 1111110 1111111 1 112345444 33 232 5766555 6
Q ss_pred HHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC---------CC----CCCc
Q 017176 83 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI---------GV----DDHD 149 (376)
Q Consensus 83 a~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~---------g~----~~~~ 149 (376)
.+.++++|+++|.|-.| +...+.|+++.+ .++||.--+-+ |+ .+.
T Consensus 119 ~rl~~eaGa~aVklEdg--------------------~e~~~~I~al~~-agIpV~gHiGLtPqsv~~~ggf~v~grt~- 176 (281)
T 1oy0_A 119 TRFLKDGGAHAVKLEGG--------------------ERVAEQIACLTA-AGIPVMAHIGFTPQSVNTLGGFRVQGRGD- 176 (281)
T ss_dssp HHHHHTTCCSEEEEEBS--------------------GGGHHHHHHHHH-HTCCEEEEEECCC--------------CH-
T ss_pred HHHHHHhCCeEEEECCc--------------------HHHHHHHHHHHH-CCCCEEeeecCCcceecccCCeEEEeCcH-
Confidence 66677799999988533 123344444443 26776522211 11 111
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecC
Q 017176 150 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 215 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGg 215 (376)
..+++++. ++.++++|++.|.+.+-. -+...++.++. ++|+|+-|.
T Consensus 177 ~a~~~i~r-A~a~~eAGA~~ivlE~vp------------------~~~a~~it~~l-~iP~igIGa 222 (281)
T 1oy0_A 177 AAEQTIAD-AIAVAEAGAFAVVMEMVP------------------AELATQITGKL-TIPTVGIGA 222 (281)
T ss_dssp HHHHHHHH-HHHHHHHTCSEEEEESCC------------------HHHHHHHHHHC-SSCEEEESS
T ss_pred HHHHHHHH-HHHHHHcCCcEEEEecCC------------------HHHHHHHHHhC-CCCEEEeCC
Confidence 23455554 456788999999988632 23455666765 899998764
|
| >1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=94.88 E-value=0.03 Score=52.10 Aligned_cols=96 Identities=10% Similarity=0.096 Sum_probs=62.1
Q ss_pred HHHHHHHhcccC--ccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHH
Q 017176 123 GEAMSVIAANTN--VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA 200 (376)
Q Consensus 123 ~eiv~~v~~~~~--~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~ 200 (376)
.+.++++|+..+ .++.|-+ ++++++.+ + .++|+|.|-++..+.. .-.+.+..
T Consensus 180 ~~av~~ar~~~~~~~~I~VEV-------~tleea~e----A-~~aGaD~I~LDn~~~e--------------~l~~av~~ 233 (285)
T 1o4u_A 180 ERAVQEVRKIIPFTTKIEVEV-------ENLEDALR----A-VEAGADIVMLDNLSPE--------------EVKDISRR 233 (285)
T ss_dssp HHHHHHHHTTSCTTSCEEEEE-------SSHHHHHH----H-HHTTCSEEEEESCCHH--------------HHHHHHHH
T ss_pred HHHHHHHHHhCCCCceEEEEe-------CCHHHHHH----H-HHcCCCEEEECCCCHH--------------HHHHHHHH
Confidence 455666666542 4555532 23445433 2 2589999999874310 00122333
Q ss_pred HHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 201 LLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 201 ~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
+....+++|+.++||| +++.+.+..++|+|++.+|+....-|++
T Consensus 234 l~~~~~~v~ieASGGI-t~eni~~~a~tGVD~IsvGslt~sa~~~ 277 (285)
T 1o4u_A 234 IKDINPNVIVEVSGGI-TEENVSLYDFETVDVISSSRLTLQEVFV 277 (285)
T ss_dssp HHHHCTTSEEEEEECC-CTTTGGGGCCTTCCEEEEGGGTSSCCCC
T ss_pred hhccCCCceEEEECCC-CHHHHHHHHHcCCCEEEEeHHHcCCCCc
Confidence 3333457999999999 7888888888999999999988777764
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.035 Score=55.82 Aligned_cols=64 Identities=16% Similarity=0.295 Sum_probs=48.6
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
+.++|+|.|.|..-. |++. .-.+.++.+++.+++++|| .|.|.|.+.++.+++.|||+|-+|-|
T Consensus 289 Lv~AGvD~iviD~ah----Ghs~--------~v~~~i~~ik~~~p~~~vi-aGNVaT~e~a~~Li~aGAD~vkVGiG 352 (556)
T 4af0_A 289 LAEAGLDVVVLDSSQ----GNSV--------YQIEFIKWIKQTYPKIDVI-AGNVVTREQAAQLIAAGADGLRIGMG 352 (556)
T ss_dssp HHHTTCCEEEECCSC----CCSH--------HHHHHHHHHHHHCTTSEEE-EEEECSHHHHHHHHHHTCSEEEECSS
T ss_pred HHhcCCcEEEEeccc----cccH--------HHHHHHHHHHhhCCcceEE-eccccCHHHHHHHHHcCCCEEeecCC
Confidence 447999999986432 2211 1156778888888888765 58999999999999999999988765
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=94.80 E-value=0.24 Score=44.60 Aligned_cols=103 Identities=16% Similarity=0.104 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhcccCccEEEEecCCCCCC-ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHH
Q 017176 120 KFVGEAMSVIAANTNVPVSVKCRIGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY 198 (376)
Q Consensus 120 ~~~~eiv~~v~~~~~~pv~vKiR~g~~~~-~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v 198 (376)
..+..+++.+...- .+.|-++.-.++. .+.....+ +++.++++|+..|.+.+ .+.+
T Consensus 5 ~~~~~~~~~~~~~~--~livscq~~~~~pl~~~~~~~~-~A~a~~~~Ga~~i~~~~--------------------~~~i 61 (232)
T 3igs_A 5 SLLEQLDKNIAASG--GLIVSCQPVPGSPLDKPEIVAA-MALAAEQAGAVAVRIEG--------------------IDNL 61 (232)
T ss_dssp CHHHHHHHHHHHHC--CEEEECCCCTTCTTCSHHHHHH-HHHHHHHTTCSEEEEES--------------------HHHH
T ss_pred HHHHHHHHHhhhcC--CEEEEEeCCCCCCCCCcchHHH-HHHHHHHCCCeEEEECC--------------------HHHH
Confidence 34555666662221 3555555432222 22333333 46677889999988621 4567
Q ss_pred HHHHhhCCCCeEEEe-----cC--C---CCHHHHHHHHHcCcCeeEEchHHhhCCchh
Q 017176 199 YALLRDFPDLTFTLN-----GG--I---NTVDEVNAALRKGAHHVMVGRAAYQNPWYT 246 (376)
Q Consensus 199 ~~~~~~~~~ipVi~n-----Gg--I---~s~~da~~~l~~Gad~VmiGRa~l~~P~lf 246 (376)
.++++. +++||++. || + .+.+++.++++.|||.|.++.+...+|..+
T Consensus 62 ~~ir~~-v~~Pvig~~k~d~~~~~~~I~~~~~~i~~~~~~Gad~V~l~~~~~~~p~~l 118 (232)
T 3igs_A 62 RMTRSL-VSVPIIGIIKRDLDESPVRITPFLDDVDALAQAGAAIIAVDGTARQRPVAV 118 (232)
T ss_dssp HHHHTT-CCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEECCSSCCSSCH
T ss_pred HHHHHh-cCCCEEEEEeecCCCcceEeCccHHHHHHHHHcCCCEEEECccccCCHHHH
Confidence 777765 59999862 33 3 356789998889999999999888888653
|
| >3u9i_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, PSI-biology; 2.90A {Roseiflexus SP} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.29 Score=47.52 Aligned_cols=136 Identities=10% Similarity=0.054 Sum_probs=84.3
Q ss_pred EecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCC
Q 017176 70 QIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDH 148 (376)
Q Consensus 70 QL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~ 148 (376)
.+...+++.+++.++...+.||..+-+..|.+.... +. . ..++.-.+.|++||+.+ +..+.|-..-+|+
T Consensus 160 t~~~~~~e~~~~~a~~~~~~Gf~~iKlKvg~~~~~~---~~-~----~~~~~di~~v~avR~a~~d~~L~vDaN~~w~-- 229 (393)
T 3u9i_A 160 TITTGSVTAAARAAQAIVARGVTTIKIKIGAGDPDA---TT-I----RTMEHDLARIVAIRDVAPTARLILDGNCGYT-- 229 (393)
T ss_dssp EEC---CHHHHHHHHHHHTTTCCEEEEECC----------C-H----HHHHHHHHHHHHHHHHSTTSEEEEECCSCCC--
T ss_pred EecCCCHHHHHHHHHHHHHcCCCeEEEEeCCCcccc---cc-c----ccHHHHHHHHHHHHHHCCCCeEEEEccCCCC--
Confidence 344567888988888888889999999876543210 10 1 22556667788888876 3344444334443
Q ss_pred ccHHHHHHHHHHHh--hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHH
Q 017176 149 DSYNQLCDFIYKVS--SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL 226 (376)
Q Consensus 149 ~~~~~~~~~i~~~~--e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l 226 (376)
.++.++++ +.+ ++.++.+|. . .+++-+++.++++.+.. ++||.+.=.+.+..++.+++
T Consensus 230 --~~~A~~~~-~~L~~~~~~i~~iE----e------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i 289 (393)
T 3u9i_A 230 --APDALRLL-DMLGVHGIVPALFE----Q------------PVAKDDEEGLRRLTATR-RVPVAADESVASATDAARLA 289 (393)
T ss_dssp --HHHHHHHH-HTTTTTTCCCSEEE----C------------CSCTTCTTHHHHHHHTC-SSCEEESTTCCSHHHHHHHH
T ss_pred --HHHHHHHH-HHHhhCCCCeEEEE----C------------CCCCCcHHHHHHHHhhC-CCcEEeCCcCCCHHHHHHHH
Confidence 44555443 445 456666654 1 12222355566777664 89999988999999999999
Q ss_pred H-cCcCeeEE
Q 017176 227 R-KGAHHVMV 235 (376)
Q Consensus 227 ~-~Gad~Vmi 235 (376)
+ ..+|.|++
T Consensus 290 ~~~a~d~i~~ 299 (393)
T 3u9i_A 290 RNAAVDVLNI 299 (393)
T ss_dssp HTTCCSEEEE
T ss_pred HcCCCCEEEe
Confidence 8 56888876
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.042 Score=55.18 Aligned_cols=61 Identities=23% Similarity=0.256 Sum_probs=48.1
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017176 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
.++|+|.|.++.... .+ +...+.+.++++.++++||++ |++.+.+++..+.+.|||+|.+|
T Consensus 238 ~~aG~d~I~id~a~g----~~--------~~~~~~v~~i~~~~p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~vg 298 (490)
T 4avf_A 238 VAAGVDVVVVDTAHG----HS--------KGVIERVRWVKQTFPDVQVIG-GNIATAEAAKALAEAGADAVKVG 298 (490)
T ss_dssp HHTTCSEEEEECSCC----SB--------HHHHHHHHHHHHHCTTSEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred hhcccceEEecccCC----cc--------hhHHHHHHHHHHHCCCceEEE-eeeCcHHHHHHHHHcCCCEEEEC
Confidence 368999999985431 11 112577888888877889887 88999999999999999999985
|
| >2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.33 Score=44.75 Aligned_cols=53 Identities=8% Similarity=0.076 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEE
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 140 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vK 140 (376)
+.+...+-|+...+.|+|.||||++++. ...++.+..+|+++++.+++|++|-
T Consensus 32 ~~~~a~~~a~~~v~~GAdiIDIg~~s~~-------------~eE~~rv~~vi~~l~~~~~~pisID 84 (271)
T 2yci_X 32 DPRPIQEWARRQAEKGAHYLDVNTGPTA-------------DDPVRVMEWLVKTIQEVVDLPCCLD 84 (271)
T ss_dssp CCHHHHHHHHHHHHTTCSEEEEECCSCS-------------SCHHHHHHHHHHHHHHHCCCCEEEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEcCCcCc-------------hhHHHHHHHHHHHHHHhCCCeEEEe
Confidence 3455566667777899999999987632 2457889999999998889999884
|
| >3tr2_A Orotidine 5'-phosphate decarboxylase; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.00A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.72 E-value=1.2 Score=40.14 Aligned_cols=191 Identities=13% Similarity=0.150 Sum_probs=100.2
Q ss_pred CCcEEEccCCCCChHHHHHHHHHhCCC-cE--EEecceeecccccccchhhhhhccCCCCCCEEEEec-CCCHHHHHHHH
Q 017176 8 PPWFSVAPMMDWTDNHYRTLARLISKH-AW--LYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG-GSNLDNLAKAT 83 (376)
Q Consensus 8 ~nri~lAPM~~~td~~~r~~~~~~Gg~-gl--~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~-g~~~~~~~~aa 83 (376)
++++++| +-..+-.....+..+.++. .. +-+++....+ ..-...+. ..+.++++=+- +--|.....++
T Consensus 8 ~~~LivA-LD~~~~~~al~l~~~~~~~v~~~Kvg~~lf~~~G----~~~v~~L~---~~g~~iflDlK~~DI~nTv~~~~ 79 (239)
T 3tr2_A 8 DPKVIVA-IDAGTVEQARAQINPLTPELCHLKIGSILFTRYG----PAFVEELM---QKGYRIFLDLKFYDIPQTVAGAC 79 (239)
T ss_dssp CCCEEEE-CCCSSHHHHHHHHTTCCTTTCEEEEEHHHHHHHH----HHHHHHHH---HTTCCEEEEEEECSCHHHHHHHH
T ss_pred CCCeEEE-eCCCCHHHHHHHHHHhCCcccEEEeCHHHHHhhC----HHHHHHHH---hcCCCEEEEecccccchHHHHHH
Confidence 3567766 3223334445555555532 22 2344443221 11112221 23567776664 44467777788
Q ss_pred HHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcc--cCcc----EEEEecCCCCC------CccH
Q 017176 84 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN--TNVP----VSVKCRIGVDD------HDSY 151 (376)
Q Consensus 84 ~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~--~~~p----v~vKiR~g~~~------~~~~ 151 (376)
+.+.++|+|.+.+|. ||+ ++-+...++...+. .+.| |++-++.+-.+ ..++
T Consensus 80 ~~~~~~gad~vTvh~------------~~G-----~~~~~~a~~~~~~~~~~~~~~l~~Vt~LTS~~~~~l~~~g~~~~~ 142 (239)
T 3tr2_A 80 RAVAELGVWMMNIHI------------SGG-----RTMMETVVNALQSITLKEKPLLIGVTILTSLDGSDLKTLGIQEKV 142 (239)
T ss_dssp HHHHHTTCSEEEEEG------------GGC-----HHHHHHHHHHHHTCCCSSCCEEEEECSCTTCCHHHHHHTTCCSCH
T ss_pred HHHHhCCCCEEEEec------------cCC-----HHHHHHHHHHHHhcCcCCCceEEEEEEEeeCCHHHHHhcCCCCCH
Confidence 888999999999984 122 23344444444332 1123 22222221100 0233
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHH----------H
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVD----------E 221 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~----------d 221 (376)
.+.+..+++...++|++.+.+++... ..+++..+.-.++...||.-.. +
T Consensus 143 ~~~v~~~A~~a~~~g~~GvV~s~~e~---------------------~~ir~~~~~~fl~vtPGIr~~g~~~~dQ~rv~t 201 (239)
T 3tr2_A 143 PDIVCRMATLAKSAGLDGVVCSAQEA---------------------ALLRKQFDRNFLLVTPGIRLETDEKGDQKRVMT 201 (239)
T ss_dssp HHHHHHHHHHHHHHTCCEEECCHHHH---------------------HHHHTTCCTTSEEEECCBC----------CCBC
T ss_pred HHHHHHHHHHHHHcCCCEEEECchhH---------------------HHHHHhcCCCcEEECCCcCCCCCCcCcccccCC
Confidence 44444456666678999988765321 1233333333356667775321 1
Q ss_pred HHHHHHcCcCeeEEchHHhhCCc
Q 017176 222 VNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 222 a~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
..++++.|+|.+.+||+++..+.
T Consensus 202 ~~~~~~aGad~lVvGr~I~~a~d 224 (239)
T 3tr2_A 202 PRAAIQAGSDYLVIGRPITQSTD 224 (239)
T ss_dssp HHHHHHHTCSEEEECHHHHTSSS
T ss_pred HHHHHHcCCCEEEEChHHhCCCC
Confidence 45677789999999999997655
|
| >3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529, structural genomics, NEW YORK S genomics research consortium; 2.19A {Lactobacillus acidophilus} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.85 Score=41.68 Aligned_cols=192 Identities=13% Similarity=0.106 Sum_probs=102.4
Q ss_pred cCCcEEEccCCCCChHHHHHHHHHhCCCc--E--EEecceeecccccccchhhhhhccCCCCCCEEEEec-CCCHHHHHH
Q 017176 7 LPPWFSVAPMMDWTDNHYRTLARLISKHA--W--LYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG-GSNLDNLAK 81 (376)
Q Consensus 7 l~nri~lAPM~~~td~~~r~~~~~~Gg~g--l--~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~-g~~~~~~~~ 81 (376)
+++|+++| +-..+-.....++.+.++.- . +-++++...+ ..-...+.+ .+.++++=+- +--|.....
T Consensus 3 m~~~LivA-LD~~~~~~al~l~~~l~~~v~~~~KvG~~l~~~~G----~~~v~~Lk~---~g~~VflDlK~~DIpnTv~~ 74 (259)
T 3tfx_A 3 MDRPVIVA-LDLDNEEQLNKILSKLGDPHDVFVKVGMELFYNAG----IDVIKKLTQ---QGYKIFLDLKMHDIPNTVYN 74 (259)
T ss_dssp -CCCEEEE-CCCSCHHHHHHHHHTTCCGGGCEEEECHHHHHHHC----HHHHHHHHH---TTCEEEEEEEECSCHHHHHH
T ss_pred CCCCeEEE-eCCCCHHHHHHHHHHhCcccceEEEeCHHHHHhcC----HHHHHHHHH---CCCcEEEEecccccchHHHH
Confidence 35677776 43334445556666665321 1 1233333222 111222222 2566766653 445777777
Q ss_pred HHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcc--cC--cc--EEE--EecCCCC----C--
Q 017176 82 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN--TN--VP--VSV--KCRIGVD----D-- 147 (376)
Q Consensus 82 aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~--~~--~p--v~v--KiR~g~~----~-- 147 (376)
+++.+.++|+|.+.+|. ||+ .+-+...++...+. .+ .| +.| =.+.+.. +
T Consensus 75 a~~~~~~~gad~vTVh~------------~~G-----~~~~~aa~~~~~~~~~~g~~~~~li~Vt~lTS~~~~~l~~~~g 137 (259)
T 3tfx_A 75 GAKALAKLGITFTTVHA------------LGG-----SQMIKSAKDGLIAGTPAGHSVPKLLAVTELTSISDDVLRNEQN 137 (259)
T ss_dssp HHHHHHTTTCSEEEEEG------------GGC-----HHHHHHHHHHHHHHSCTTSCCCEEEEECSCTTCCHHHHHHTSC
T ss_pred HHHHHHhcCCCEEEEcC------------CCC-----HHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCCHHHHHHHhC
Confidence 88888899999999984 122 23344444444321 11 22 222 1222200 0
Q ss_pred -CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHH------
Q 017176 148 -HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVD------ 220 (376)
Q Consensus 148 -~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~------ 220 (376)
..++.+.+..+++...++|++.+.+++.. ...+++. ..+-.++...||.-..
T Consensus 138 ~~~~~~e~v~~~A~~a~~~G~dGvV~s~~e------------------~~~ir~~---~~~~f~~vtPGIr~~g~~~gDQ 196 (259)
T 3tfx_A 138 CRLPMAEQVLSLAKMAKHSGADGVICSPLE------------------VKKLHEN---IGDDFLYVTPGIRPAGNAKDDQ 196 (259)
T ss_dssp BSSCHHHHHHHHHHHHHHTTCCEEECCGGG------------------HHHHHHH---HCSSSEEEECCCCCC-------
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEECHHH------------------HHHHHhh---cCCccEEEcCCcCCCCCCcCCc
Confidence 12344555445666778999998875321 2223332 2233466777776421
Q ss_pred ----HHHHHHHcCcCeeEEchHHhhCCc
Q 017176 221 ----EVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 221 ----da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
...++++.|||.+.+||++...++
T Consensus 197 ~Rv~T~~~a~~aGad~iVvGr~I~~a~d 224 (259)
T 3tfx_A 197 SRVATPKMAKEWGSSAIVVGRPITLASD 224 (259)
T ss_dssp ----CHHHHHHTTCSEEEECHHHHTSSS
T ss_pred cccCCHHHHHHcCCCEEEEChHHhCCCC
Confidence 156677899999999999987665
|
| >3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.017 Score=54.16 Aligned_cols=39 Identities=13% Similarity=0.209 Sum_probs=28.3
Q ss_pred CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 206 PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 206 ~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
+++||.++||| |.+.+.++.++|+|++.+|+.....|++
T Consensus 248 ~~v~I~ASGGI-t~~ni~~~~~~GvD~i~vGs~i~~a~~~ 286 (294)
T 3c2e_A 248 KHFLLECSGGL-NLDNLEEYLCDDIDIYSTSSIHQGTPVI 286 (294)
T ss_dssp -CCEEEEECCC-CC------CCCSCSEEECGGGTSSCCCC
T ss_pred CCeEEEEECCC-CHHHHHHHHHcCCCEEEEechhcCCCCC
Confidence 45999999999 9999999999999999999987666764
|
| >3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.19 Score=47.41 Aligned_cols=63 Identities=13% Similarity=0.138 Sum_probs=46.4
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
++|+|.|-+...+ .+.++++++.. .++++.++||| +.+.+.+..++|+|++.+|.--..-
T Consensus 249 ~aGaD~I~LDn~~------------------~~~l~~av~~l~~~v~ieaSGGI-t~~~I~~~a~tGVD~isvGalt~sa 309 (320)
T 3paj_A 249 SAGADIIMLDNFS------------------LEMMREAVKINAGRAALENSGNI-TLDNLKECAETGVDYISVGALTKHL 309 (320)
T ss_dssp HTTCSEEEEESCC------------------HHHHHHHHHHHTTSSEEEEESSC-CHHHHHHHHTTTCSEEECTHHHHSB
T ss_pred HcCCCEEEECCCC------------------HHHHHHHHHHhCCCCeEEEECCC-CHHHHHHHHHcCCCEEEECceecCC
Confidence 4799999987632 23344443322 47999999999 6899998888999999999855444
Q ss_pred Cch
Q 017176 243 PWY 245 (376)
Q Consensus 243 P~l 245 (376)
|++
T Consensus 310 ~~l 312 (320)
T 3paj_A 310 KAL 312 (320)
T ss_dssp CCC
T ss_pred Ccc
Confidence 554
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.046 Score=54.95 Aligned_cols=61 Identities=18% Similarity=0.219 Sum_probs=48.4
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017176 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
.++|+|.|.++.... . .....+.+.++++.++++||++ |++.+.+++..+.+.|||+|.+|
T Consensus 240 ~~aG~d~I~id~a~g----~--------~~~~~~~i~~ir~~~p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~Vg 300 (496)
T 4fxs_A 240 VEAGVDVLLIDSSHG----H--------SEGVLQRIRETRAAYPHLEIIG-GNVATAEGARALIEAGVSAVKVG 300 (496)
T ss_dssp HHTTCSEEEEECSCT----T--------SHHHHHHHHHHHHHCTTCCEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred HhccCceEEeccccc----c--------chHHHHHHHHHHHHCCCceEEE-cccCcHHHHHHHHHhCCCEEEEC
Confidence 368999999986531 1 1112577888888888899988 88999999999999999999986
|
| >1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A* | Back alignment and structure |
|---|
Probab=94.50 E-value=0.078 Score=49.33 Aligned_cols=67 Identities=9% Similarity=0.081 Sum_probs=49.4
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017176 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
++|+|.|-+|..+.. ...+.+..+....+++++.++||| +++.+.+..++|+|++.+|.....-|
T Consensus 212 ~aGaD~I~LDn~~~~--------------~~~~~v~~l~~~~~~v~ieaSGGI-t~~~i~~~a~tGVD~isvG~l~~~a~ 276 (284)
T 1qpo_A 212 PEKPELILLDNFAVW--------------QTQTAVQRRDSRAPTVMLESSGGL-SLQTAATYAETGVDYLAVGALTHSVR 276 (284)
T ss_dssp GGCCSEEEEETCCHH--------------HHHHHHHHHHHHCTTCEEEEESSC-CTTTHHHHHHTTCSEEECGGGTSSBC
T ss_pred HcCCCEEEECCCCHH--------------HHHHHHHHhhccCCCeEEEEECCC-CHHHHHHHHhcCCCEEEECHHHcCCC
Confidence 589999999874321 001233344433457999999999 78999999999999999999776667
Q ss_pred ch
Q 017176 244 WY 245 (376)
Q Consensus 244 ~l 245 (376)
++
T Consensus 277 ~~ 278 (284)
T 1qpo_A 277 VL 278 (284)
T ss_dssp CC
T ss_pred Cc
Confidence 64
|
| >2chr_A Chloromuconate cycloisomerase; 3.00A {Cupriavidus necator} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=94.50 E-value=1 Score=42.97 Aligned_cols=125 Identities=10% Similarity=0.080 Sum_probs=85.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCcc
Q 017176 73 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDS 150 (376)
Q Consensus 73 g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~ 150 (376)
+..++.+.+.++.+.+.||..+-+..|. .+++.-.+.++++|+.+ +..+.+-..-+|+.
T Consensus 141 ~~~~~~~~~~~~~~~~~g~~~~K~Kvg~----------------~~~~~d~~~v~avr~~~g~~~~l~vDaN~~~~~--- 201 (370)
T 2chr_A 141 GDTKRDLDSAVEMIERRRHNRFKVKLGF----------------RSPQDDLIHMEALSNSLGSKAYLRVDVNQAWDE--- 201 (370)
T ss_dssp SCHHHHHHHHHHHHHTTSCCEEEEECSS----------------SCHHHHHHHHHHHHHHTTTTSEEEEECTTCCCT---
T ss_pred CchhhhHHHHHHHHhhcccceeeccccc----------------CChHHHHHHHHHHHHhcCCCcEEEecCCCCCCH---
Confidence 3456788888899999999998775431 23455566778888876 34556655556653
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cC
Q 017176 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KG 229 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~G 229 (376)
++..++ .+.+++.++.+|- . .+++-+++.++++.+.. ++||.+.=.+.+..++.++++ ..
T Consensus 202 -~~A~~~-~~~l~~~~~~~iE----e------------P~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~~~~~a 262 (370)
T 2chr_A 202 -QVASVY-IPELEALGVELIE----Q------------PVGRENTQALRRLSDNN-RVAIMADESLSTLASAFDLARDRS 262 (370)
T ss_dssp -HHHHHH-HHHHHTTTCCEEE----C------------CSCSSCHHHHHHHHHHC-SSEEEESSSCCSHHHHHHHHTTTC
T ss_pred -HHHHHH-HHHHHhcCCceec----C------------CCChhhhhhhhHHhhhc-cCCccCCccCCCHHHHHHHHHcCC
Confidence 233333 3455678887765 1 12233477777887765 899999889999999999998 55
Q ss_pred cCeeEE
Q 017176 230 AHHVMV 235 (376)
Q Consensus 230 ad~Vmi 235 (376)
+|.|++
T Consensus 263 ~d~i~~ 268 (370)
T 2chr_A 263 VDVFSL 268 (370)
T ss_dssp CSEECC
T ss_pred CcEEEe
Confidence 787754
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=94.49 E-value=3.4 Score=39.20 Aligned_cols=153 Identities=16% Similarity=0.156 Sum_probs=92.0
Q ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe
Q 017176 62 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 141 (376)
Q Consensus 62 ~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 141 (376)
....|+++.+.+++.++-.+.++.++++|+|++-+- .|... + ...+-+.+-.++|.+++++||.+--
T Consensus 98 ~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~--~P~Y~--~---------~s~~~l~~~f~~VA~a~~lPiilYn 164 (343)
T 2v9d_A 98 DRRVPVLIGTGGTNARETIELSQHAQQAGADGIVVI--NPYYW--K---------VSEANLIRYFEQVADSVTLPVMLYN 164 (343)
T ss_dssp TTSSCEEEECCSSCHHHHHHHHHHHHHHTCSEEEEE--CCSSS--C---------CCHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred CCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEEC--CCCCC--C---------CCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 456799999999999999999999999999999885 45421 1 1356778888888888899998754
Q ss_pred ---cCCCCCCccHHHHHHHHHHHh-hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC----CCCeEEEe
Q 017176 142 ---RIGVDDHDSYNQLCDFIYKVS-SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF----PDLTFTLN 213 (376)
Q Consensus 142 ---R~g~~~~~~~~~~~~~i~~~~-e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~----~~ipVi~n 213 (376)
|.|.+- +.+.+ .+++ +.-.+-.|--..+. ...+.++++.. +++. +.+
T Consensus 165 ~P~~tg~~l--~~e~~----~~La~~~pnIvgiKdssgd------------------~~~~~~l~~~~~~~~~~f~-v~~ 219 (343)
T 2v9d_A 165 FPALTGQDL--TPALV----KTLADSRSNIIGIKDTIDS------------------VAHLRSMIHTVKGAHPHFT-VLC 219 (343)
T ss_dssp CHHHHSSCC--CHHHH----HHHHHHCTTEEEEEECCSC------------------HHHHHHHHHHHHHHCTTCE-EEE
T ss_pred CchhcCcCC--CHHHH----HHHHHhCCCEEEEEeCCCC------------------HHHHHHHHHhcCCCCCCEE-EEE
Confidence 234332 22222 2333 22234333322211 33333443322 2443 456
Q ss_pred cCCCCHHHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhC
Q 017176 214 GGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256 (376)
Q Consensus 214 GgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 256 (376)
|+= +.+...+..|++|++.|.+-+ -|..+.+.++....|
T Consensus 220 G~D---~~~l~~l~~Ga~G~is~~anv-~P~~~~~l~~a~~~G 258 (343)
T 2v9d_A 220 GYD---DHLFNTLLLGGDGAISASGNF-APQVSVNLLKAWRDG 258 (343)
T ss_dssp SSG---GGHHHHHHTTCCEECCGGGTT-CHHHHHHHHHHHHTT
T ss_pred CcH---HHHHHHHHCCCCEEEeCHHHh-HHHHHHHHHHHHHCC
Confidence 632 234566678999999987754 466654444443344
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=94.39 E-value=0.044 Score=54.85 Aligned_cols=63 Identities=22% Similarity=0.253 Sum_probs=49.4
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEch
Q 017176 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGR 237 (376)
+.++|+|.|.+++- .|.. ...++.+.++++.++++||+ .|+|.+.+++..+++.|+|+|.+|.
T Consensus 241 l~~~G~d~ivi~~a----~g~~--------~~~~~~i~~l~~~~p~~pvi-~G~v~t~~~a~~~~~~Gad~I~vg~ 303 (491)
T 1zfj_A 241 LFEAGADAIVIDTA----HGHS--------AGVLRKIAEIRAHFPNRTLI-AGNIATAEGARALYDAGVDVVKVGI 303 (491)
T ss_dssp HHHHTCSEEEECCS----CTTC--------HHHHHHHHHHHHHCSSSCEE-EEEECSHHHHHHHHHTTCSEEEECS
T ss_pred HHHcCCCeEEEeee----cCcc--------hhHHHHHHHHHHHCCCCcEe-CCCccCHHHHHHHHHcCCCEEEECc
Confidence 34679999999972 1211 12366777888777789999 9999999999999999999999984
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.36 Score=43.40 Aligned_cols=87 Identities=22% Similarity=0.093 Sum_probs=60.1
Q ss_pred HHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhh
Q 017176 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD 204 (376)
Q Consensus 125 iv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 204 (376)
+++.+++. ++..=+|. ++.++..++ ++.+.+.|++.|.|.-++.. ..+.+++++++
T Consensus 27 ~~~~l~~~---~vv~Vir~--~~~~~a~~~----a~al~~gGi~~iEvt~~t~~---------------a~e~I~~l~~~ 82 (232)
T 4e38_A 27 INNQLKAL---KVIPVIAI--DNAEDIIPL----GKVLAENGLPAAEITFRSDA---------------AVEAIRLLRQA 82 (232)
T ss_dssp HHHHHHHH---CEEEEECC--SSGGGHHHH----HHHHHHTTCCEEEEETTSTT---------------HHHHHHHHHHH
T ss_pred HHHHHHhC---CEEEEEEc--CCHHHHHHH----HHHHHHCCCCEEEEeCCCCC---------------HHHHHHHHHHh
Confidence 44444432 44444554 333334333 33445799999999765421 26778888888
Q ss_pred CCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017176 205 FPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 205 ~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
+++ .+++.|-|.+.++++.+++.|||+|...
T Consensus 83 ~~~-~~iGaGTVlt~~~a~~Ai~AGA~fIvsP 113 (232)
T 4e38_A 83 QPE-MLIGAGTILNGEQALAAKEAGATFVVSP 113 (232)
T ss_dssp CTT-CEEEEECCCSHHHHHHHHHHTCSEEECS
T ss_pred CCC-CEEeECCcCCHHHHHHHHHcCCCEEEeC
Confidence 765 6899999999999999999999999864
|
| >3s5s_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium; 2.40A {Sorangium cellulosum} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.42 Score=46.29 Aligned_cols=129 Identities=10% Similarity=0.123 Sum_probs=83.6
Q ss_pred EEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCC
Q 017176 69 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDD 147 (376)
Q Consensus 69 vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~ 147 (376)
..+...+++.+++.++.+.+.||..+-+..|.. .+ +.-.+.|++||+.+ +..+.|-..-+|+
T Consensus 138 ~t~~~~~~e~~~~~a~~~~~~G~~~iKlKvg~~------------~~----~~d~~~v~avR~~~~~~~L~vDaN~~w~- 200 (389)
T 3s5s_A 138 ITITTGSPERAEEAARRAAAMGFRALKVKVGGR------------LA----ASDPARIEAIHAAAPGASLILDGNGGLT- 200 (389)
T ss_dssp EEECSSCSHHHHHHHHHHHHHTCCEEEEECCGG------------GT----TTHHHHHHHHHHHCTTCEEEEECTTCSC-
T ss_pred eeecCCCHHHHHHHHHHHHHcCCCeEEEEecCC------------Ch----HHHHHHHHHHHHhCCCCeEEEECCCCCC-
Confidence 345556789998888888778999998865421 12 22345566677665 3344444344443
Q ss_pred CccHHHHHHHHHHHh--hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHH
Q 017176 148 HDSYNQLCDFIYKVS--SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAA 225 (376)
Q Consensus 148 ~~~~~~~~~~i~~~~--e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~ 225 (376)
.++.++++ +.+ ++.++.+|. ..+++-+++.++++.+.. ++||.+.=.+.+..++.++
T Consensus 201 ---~~~A~~~~-~~L~~~~~~i~~iE----------------eP~~~~d~~~~~~l~~~~-~iPIa~dEs~~~~~~~~~~ 259 (389)
T 3s5s_A 201 ---AGEALALV-AHARRLGADVALLE----------------QPVPRDDWDGMKEVTRRA-GVDVAADESAASAEDVLRV 259 (389)
T ss_dssp ---HHHHHHHH-HHHHHTTCEEEEEE----------------CCSCTTCHHHHHHHHHHS-SSCEEESTTCSSHHHHHHH
T ss_pred ---HHHHHHHH-HHHhhCCCCeEEEE----------------CCCCcccHHHHHHHHhhC-CCCEEECCCCCCHHHHHHH
Confidence 44555543 344 445555544 112233477777887765 8999998899999999999
Q ss_pred HH-cCcCeeEE
Q 017176 226 LR-KGAHHVMV 235 (376)
Q Consensus 226 l~-~Gad~Vmi 235 (376)
++ ..+|.|++
T Consensus 260 i~~~a~d~v~~ 270 (389)
T 3s5s_A 260 AAERAATVVNI 270 (389)
T ss_dssp HHTTCCSEEEE
T ss_pred HHcCCCCEEEe
Confidence 98 56898887
|
| >4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.34 E-value=0.32 Score=43.41 Aligned_cols=141 Identities=13% Similarity=0.142 Sum_probs=80.8
Q ss_pred CC-CEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe
Q 017176 64 QH-PIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 141 (376)
Q Consensus 64 ~~-p~~vQL~-g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 141 (376)
+. ++++=+= +--|.....+++.+.+. |.+.+|..... .. -+...++...+ .+.-|++=+
T Consensus 52 ~~~~VflDlK~~DI~nTv~~~~~~~~~~--d~vTVh~~~G~----------~~------~~~~a~~~~~~-~~~~v~vLt 112 (222)
T 4dbe_A 52 DVEEIIVDFKLADIGYIMKSIVERLSFA--NSFIAHSFIGV----------KG------SLDELKRYLDA-NSKNLYLVA 112 (222)
T ss_dssp CCSEEEEEEEECSCHHHHHHHHTTCTTC--SEEEEESTTCT----------TT------THHHHHHHHHH-TTCEEEEEE
T ss_pred CCCeEEEEeeecchHHHHHHHHHHHHhC--CEEEEEcCcCc----------HH------HHHHHHHHHHh-cCCcEEEEE
Confidence 55 6776664 44466666666655555 99988853220 11 12223333322 123455545
Q ss_pred cCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCH-H
Q 017176 142 RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV-D 220 (376)
Q Consensus 142 R~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~-~ 220 (376)
+.+..+..+. ....++++.+++|++.+.+++.. -+.+..+++..++ .++..+||.-. .
T Consensus 113 s~s~~~~~~~--~~~~~a~~a~~~g~~GvV~sat~------------------p~e~~~ir~~~~~-~~~vtPGI~~~g~ 171 (222)
T 4dbe_A 113 VMSHEGWSTL--FADYIKNVIREISPKGIVVGGTK------------------LDHITQYRRDFEK-MTIVSPGMGSQGG 171 (222)
T ss_dssp ECSSTTCCCT--THHHHHHHHHHHCCSEEEECTTC------------------HHHHHHHHHHCTT-CEEEECCBSTTSB
T ss_pred eCCCcchHHH--HHHHHHHHHHHhCCCEEEECCCC------------------HHHHHHHHHhCCC-CEEEcCCcccCcc
Confidence 5543322111 01224556677899998876532 1234455555666 67888988632 1
Q ss_pred HHHHHHHcCcCeeEEchHHhhCCc
Q 017176 221 EVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 221 da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
+..++++.|+|.+.+||++...++
T Consensus 172 tp~~a~~~Gad~iVVGR~I~~A~d 195 (222)
T 4dbe_A 172 SYGDAVCAGADYEIIGRSIYNAGN 195 (222)
T ss_dssp CTTHHHHHTCSEEEECHHHHTSSS
T ss_pred CHHHHHHcCCCEEEECHHhcCCCC
Confidence 466677889999999999998665
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=94.22 E-value=0.33 Score=45.29 Aligned_cols=160 Identities=18% Similarity=0.209 Sum_probs=87.6
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017176 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 63 ~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
.+.|+. =+...|. -.|++++++|||.|=+...+ ...+. .| |-....-..+.+...++.|.+.++.||++-+-
T Consensus 15 ~~~~i~-~~~a~D~----~sA~~~~~aG~~ai~vs~~~-~a~~~-~G-~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d 86 (295)
T 1xg4_A 15 KENPLQ-IVGTINA----NHALLAQRAGYQAIYLSGGG-VAAGS-LG-LPDLGISTLDDVLTDIRRITDVCSLPLLVDAD 86 (295)
T ss_dssp HSSSEE-EEECSSH----HHHHHHHHTTCSCEEECHHH-HHHTT-TC-CCSSSCSCHHHHHHHHHHHHHHCCSCEEEECT
T ss_pred CCCcEE-EecCcCH----HHHHHHHHcCCCEEEECchH-hhhhh-cC-CCCCCCCCHHHHHHHHHHHHhhCCCCEEecCC
Confidence 344443 3455564 36788889999999774220 10000 01 11112345677888888888888999999999
Q ss_pred CCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccc-cCCCCCCCCCCCCccc--HHHHHHHHhhCCCCeEEEecCCCCH
Q 017176 143 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL-LNGISPAENRTIPPLK--YEYYYALLRDFPDLTFTLNGGINTV 219 (376)
Q Consensus 143 ~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~-~~g~~~~~~~~~~~~~--~~~v~~~~~~~~~ipVi~nGgI~s~ 219 (376)
.|+.+ +.+.+.+.+.++ +++|++.|++-+.... .-|+.+ +..+-|.. .+.|...++.....++..+|.....
T Consensus 87 ~Gyg~--~~~~~~~~v~~l-~~aGa~gv~iEd~~~~k~cgH~~--gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtda~ 161 (295)
T 1xg4_A 87 IGFGS--SAFNVARTVKSM-IKAGAAGLHIEDQVGAKRSGHRP--NKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDAL 161 (295)
T ss_dssp TCSSS--SHHHHHHHHHHH-HHHTCSEEEEECBCSSCCCTTSS--SCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECCH
T ss_pred cccCC--CHHHHHHHHHHH-HHcCCeEEEECCCCCCcccCCCC--CCccCCHHHHHHHHHHHHHhccCCCcEEEEecHHh
Confidence 98752 233344444444 4689999999876521 112111 11111211 2234444444334455555555432
Q ss_pred -----H----HHHHHHHcCcCeeEE
Q 017176 220 -----D----EVNAALRKGAHHVMV 235 (376)
Q Consensus 220 -----~----da~~~l~~Gad~Vmi 235 (376)
+ ++..+.+.|||+|.+
T Consensus 162 ~~~gl~~ai~ra~ay~eAGAd~i~~ 186 (295)
T 1xg4_A 162 AVEGLDAAIERAQAYVEAGAEMLFP 186 (295)
T ss_dssp HHHCHHHHHHHHHHHHHTTCSEEEE
T ss_pred hhcCHHHHHHHHHHHHHcCCCEEEE
Confidence 1 233333489999998
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.48 Score=44.72 Aligned_cols=90 Identities=16% Similarity=0.131 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHH
Q 017176 118 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 197 (376)
Q Consensus 118 ~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~ 197 (376)
.++.+.+.++.+++.++.|+.|.+-.. + .+.++.++ ++.+.|+|.|.+|++.. .+.
T Consensus 61 ~~~~l~~~i~~i~~~~~~p~gVnl~~~-~--~~~~~~~~----~~~~~g~d~V~l~~g~p-----------------~~~ 116 (326)
T 3bo9_A 61 KPDDLRKAISELRQKTDKPFGVNIILV-S--PWADDLVK----VCIEEKVPVVTFGAGNP-----------------TKY 116 (326)
T ss_dssp CHHHHHHHHHHHHTTCSSCEEEEEETT-S--TTHHHHHH----HHHHTTCSEEEEESSCC-----------------HHH
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEEecc-C--CCHHHHHH----HHHHCCCCEEEECCCCc-----------------HHH
Confidence 678889999999988888888876541 1 22344433 23468999999987531 233
Q ss_pred HHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEE
Q 017176 198 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 235 (376)
Q Consensus 198 v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vmi 235 (376)
+..+.+ . +++|+. .|.+.+++..+.+.|+|+|.+
T Consensus 117 ~~~l~~-~-g~~v~~--~v~s~~~a~~a~~~GaD~i~v 150 (326)
T 3bo9_A 117 IRELKE-N-GTKVIP--VVASDSLARMVERAGADAVIA 150 (326)
T ss_dssp HHHHHH-T-TCEEEE--EESSHHHHHHHHHTTCSCEEE
T ss_pred HHHHHH-c-CCcEEE--EcCCHHHHHHHHHcCCCEEEE
Confidence 444443 3 788875 688999999998899999998
|
| >3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=94.05 E-value=0.17 Score=46.94 Aligned_cols=63 Identities=11% Similarity=0.100 Sum_probs=46.9
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
++|+|.|-++..+ .+.++++++.. .++++.++||| +.+.+.+..++|+|.+.+|.-...-
T Consensus 216 ~aGaD~I~LDn~~------------------~~~l~~av~~~~~~v~ieaSGGI-t~~~i~~~a~tGVD~IsvGalt~sa 276 (287)
T 3tqv_A 216 AAKADIVMLDNFS------------------GEDIDIAVSIARGKVALEVSGNI-DRNSIVAIAKTGVDFISVGAITKHI 276 (287)
T ss_dssp HTTCSEEEEESCC------------------HHHHHHHHHHHTTTCEEEEESSC-CTTTHHHHHTTTCSEEECSHHHHSB
T ss_pred HcCCCEEEEcCCC------------------HHHHHHHHHhhcCCceEEEECCC-CHHHHHHHHHcCCCEEEEChhhcCC
Confidence 4899999987632 23333333322 37899999999 8889988888999999998776666
Q ss_pred Cch
Q 017176 243 PWY 245 (376)
Q Consensus 243 P~l 245 (376)
|++
T Consensus 277 ~~l 279 (287)
T 3tqv_A 277 KAI 279 (287)
T ss_dssp CCC
T ss_pred ccc
Confidence 664
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=94.03 E-value=0.13 Score=51.79 Aligned_cols=62 Identities=18% Similarity=0.281 Sum_probs=47.3
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEch
Q 017176 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGR 237 (376)
.++|+|.|.+..... .+ ...++.+.++++.++++||+ .|+|.+.+++..+.+.|||+|.+|-
T Consensus 265 veaGvd~I~Id~a~g----~~--------~~v~~~i~~i~~~~~~~~vi-~g~v~t~e~a~~~~~aGad~i~vg~ 326 (511)
T 3usb_A 265 VKASVDAIVLDTAHG----HS--------QGVIDKVKEVRAKYPSLNII-AGNVATAEATKALIEAGANVVKVGI 326 (511)
T ss_dssp HHTTCSEEEEECSCT----TS--------HHHHHHHHHHHHHCTTSEEE-EEEECSHHHHHHHHHHTCSEEEECS
T ss_pred HhhccceEEeccccc----ch--------hhhhhHHHHHHHhCCCceEE-eeeeccHHHHHHHHHhCCCEEEECC
Confidence 468999999975321 10 11256788888888788887 4789999999999999999998853
|
| >2ozt_A TLR1174 protein; structural genomics, O-succinylbenzoate synthase, PSI, protein structure initiative; 1.42A {Synechococcus elongatus} PDB: 3h7v_A | Back alignment and structure |
|---|
Probab=94.00 E-value=0.78 Score=43.35 Aligned_cols=124 Identities=9% Similarity=0.121 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC--ccEEEEecCCCCCCccH
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVDDHDSY 151 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~--~pv~vKiR~g~~~~~~~ 151 (376)
.+++.+.+.++.+.+.||..+-|..|. .+++.-.+.+++||+.++ ..+.|-..-+|+ .
T Consensus 115 ~~~e~~~~~a~~~~~~G~~~~KiKvg~----------------~~~~~d~~~v~avr~~~g~~~~L~vDaN~~~~----~ 174 (332)
T 2ozt_A 115 GSGQAALEQWQQSWQRGQTTFKWKVGV----------------MSPEEEQAILKALLAALPPGAKLRLDANGSWD----R 174 (332)
T ss_dssp CTGGGHHHHHHHHHHTTCCEEEEECSS----------------SCHHHHHHHHHHHHHHSCTTCEEEEECTTCCC----H
T ss_pred CChHHHHHHHHHHHHcCCcEEEEEeCC----------------CChHHHHHHHHHHHHHcCCCCEEEEcccCCCC----H
Confidence 457777777777778899998875431 234555677888888764 444444444443 3
Q ss_pred HHHHHHHHHHhhcC---CccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHc
Q 017176 152 NQLCDFIYKVSSLS---PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK 228 (376)
Q Consensus 152 ~~~~~~i~~~~e~~---Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~ 228 (376)
++.++++. .+++. ++.+|. ..+++-+++..+++.+.. ++||.+.=.+.+..++.++++.
T Consensus 175 ~~A~~~~~-~l~~~~~~~i~~iE----------------qP~~~~d~~~~~~l~~~~-~ipIa~dEs~~~~~~~~~~~~~ 236 (332)
T 2ozt_A 175 ATANRWFA-WLDRHGNGKIEYVE----------------QPLPPDQWQALLSLAQTV-TTAIALDESVVSAAEVQRWVDR 236 (332)
T ss_dssp HHHHHHHH-HHHHHCCTTEEEEE----------------CCSCTTCHHHHHHHHHHC-SSCEEESTTCCSHHHHHHHHHT
T ss_pred HHHHHHHH-HHHhhccCCcceeE----------------CCCCCCCHHHHHHHHHhC-CCCEEeCCCCCCHHHHHHHHHh
Confidence 45555443 34555 665544 112233477777777764 8999998889999999999995
Q ss_pred C-cCeeEE
Q 017176 229 G-AHHVMV 235 (376)
Q Consensus 229 G-ad~Vmi 235 (376)
| +|.+++
T Consensus 237 ~a~~~i~i 244 (332)
T 2ozt_A 237 GWPGFFVI 244 (332)
T ss_dssp TCCSEEEE
T ss_pred CCCCEEEE
Confidence 5 576665
|
| >1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A | Back alignment and structure |
|---|
Probab=93.89 E-value=1.9 Score=37.88 Aligned_cols=180 Identities=10% Similarity=0.056 Sum_probs=95.1
Q ss_pred CCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCC-CHHHHHHHHHHHHHCCCCEEE
Q 017176 17 MDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGS-NLDNLAKATELANAYNYDEIN 95 (376)
Q Consensus 17 ~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~-~~~~~~~aa~~~~~~G~d~Ie 95 (376)
+|.|+..=...+.+.| ++.+.--+....+..-.......+....+. ....|-+|-+ +++ +..+.+++.+.|.|.
T Consensus 7 CGit~~eda~~a~~~G-aD~iGfif~~~SpR~V~~~~a~~i~~~~~~-~~~~VgVfvn~~~~---~i~~~~~~~~ld~vQ 81 (205)
T 1nsj_A 7 CGITNLEDALFSVESG-ADAVGFVFYPKSKRYISPEDARRISVELPP-FVFRVGVFVNEEPE---KILDVASYVQLNAVQ 81 (205)
T ss_dssp CCCCSHHHHHHHHHHT-CSEEEEECCTTCTTBCCHHHHHHHHHHSCS-SSEEEEEESSCCHH---HHHHHHHHHTCSEEE
T ss_pred CCCCcHHHHHHHHHcC-CCEEEEEecCCCCCcCCHHHHHHHHHhCCC-CCCEEEEEeCCCHH---HHHHHHHhhCCCEEE
Confidence 5788877777777776 665433332111100011112223222121 2233444554 444 344555667899999
Q ss_pred ecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccC
Q 017176 96 LNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 175 (376)
Q Consensus 96 iN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r 175 (376)
||.. ..++.+ +.+++ ++|+.--++.. +.. ++ ..+ ....+|++.+.+.
T Consensus 82 LHG~-----------------e~~~~~----~~l~~--~~~vika~~v~--~~~---~l----~~~-~~~~~d~~LlD~~ 128 (205)
T 1nsj_A 82 LHGE-----------------EPIELC----RKIAE--RILVIKAVGVS--NER---DM----ERA-LNYREFPILLDTK 128 (205)
T ss_dssp ECSC-----------------CCHHHH----HHHHT--TSEEEEEEEES--SHH---HH----HHH-GGGTTSCEEEEES
T ss_pred ECCC-----------------CCHHHH----HHHhc--CCCEEEEEEcC--CHH---HH----HHH-HHcCCCEEEECCC
Confidence 9831 123333 33332 25665445542 211 22 111 2233899888764
Q ss_pred ccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHhhCCc
Q 017176 176 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~ 244 (376)
...++|.+. ..+|+.+.... ..+.|++..||+ +++.+.++++ .++.+|-+.+|.-..|-
T Consensus 129 ~~~~GGtG~-------~fdw~~l~~~~--~~~~p~~LAGGL-~peNV~~ai~~~~p~gVDvsSGvE~~pG 188 (205)
T 1nsj_A 129 TPEYGGSGK-------TFDWSLILPYR--DRFRYLVLSGGL-NPENVRSAIDVVRPFAVDVSSGVEAFPG 188 (205)
T ss_dssp CSSSSSCCS-------CCCGGGTGGGG--GGSSCEEEESSC-CTTTHHHHHHHHCCSEEEESGGGEEETT
T ss_pred CCCCCCCCC-------ccCHHHHHhhh--cCCCcEEEECCC-CHHHHHHHHHhcCCCEEEECCceecCCC
Confidence 432233321 22354443221 126799999999 8888888877 79999999999865554
|
| >3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics, infectious diseases; 1.77A {Vibrio cholerae o1 biovar el tor} PDB: 3uwq_A* | Back alignment and structure |
|---|
Probab=93.82 E-value=0.41 Score=43.67 Aligned_cols=143 Identities=13% Similarity=0.152 Sum_probs=80.8
Q ss_pred CCCEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcc-cCcc----E
Q 017176 64 QHPIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVP----V 137 (376)
Q Consensus 64 ~~p~~vQL~-g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~-~~~p----v 137 (376)
+.++++=+- +--|.....+++.+.++|+|.+.+|. ||+ .+-+...++...+. .+.| |
T Consensus 78 g~~VflDlK~~DIpnTv~~a~~~~~~~gaD~vTVh~------------~~G-----~~~~~~a~~~~~~~g~~~~~li~V 140 (255)
T 3ldv_A 78 GFSVFLDLKFHDIPNTCSKAVKAAAELGVWMVNVHA------------SGG-----ERMMAASREILEPYGKERPLLIGV 140 (255)
T ss_dssp TCCEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEG------------GGC-----HHHHHHHHHHHGGGGGGSCEEEEE
T ss_pred CCCEEEEEecccchhHHHHHHHHHHhcCCCEEEEec------------cCC-----HHHHHHHHHHHhhcCCCCceEEEE
Confidence 567776664 44467777777888899999999984 222 23344444444322 1122 3
Q ss_pred EEEecCCCCC------CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEE
Q 017176 138 SVKCRIGVDD------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 211 (376)
Q Consensus 138 ~vKiR~g~~~------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi 211 (376)
++.++.+-.+ ..++.+.+..+++...++|++.+.+++.. .. .+++..+.-.++
T Consensus 141 tvLTS~s~~~l~~~g~~~~~~~~V~~~A~~a~~aG~~GvV~sa~e------------------~~---~iR~~~g~~fl~ 199 (255)
T 3ldv_A 141 TVLTSMESADLQGIGILSAPQDHVLRLATLTKNAGLDGVVCSAQE------------------AS---LLKQHLGREFKL 199 (255)
T ss_dssp CSCTTCCHHHHHHTTCCSCHHHHHHHHHHHHHHTTCSEEECCHHH------------------HH---HHHHHHCTTSEE
T ss_pred EEEecCCHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCEEEECHHH------------------HH---HHHHhcCCCcEE
Confidence 3433332100 01233344444566667899998866421 22 222222222355
Q ss_pred EecCCCCHH----------HHHHHHHcCcCeeEEchHHhhCCc
Q 017176 212 LNGGINTVD----------EVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 212 ~nGgI~s~~----------da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
...||.-.. +..++++.|+|.+.+||++...+.
T Consensus 200 VtPGIr~qg~~~~dQ~Rv~t~~~a~~aGad~iVvGr~I~~a~d 242 (255)
T 3ldv_A 200 VTPGIRPAGSEQGDQRRIMTPAQAIASGSDYLVIGRPITQAAH 242 (255)
T ss_dssp EEECCCCTTSTTSSCSSSCCHHHHHHTTCSEEEECHHHHTCSC
T ss_pred EeCCcccCcCCccceeccCCHHHHHHcCCCEEEECHHHhCCCC
Confidence 556664211 145667789999999999998665
|
| >1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=93.80 E-value=3.2 Score=36.33 Aligned_cols=176 Identities=11% Similarity=0.062 Sum_probs=95.6
Q ss_pred CCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCC-CHHHHHHHHHHHHHCCCCEEE
Q 017176 17 MDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGS-NLDNLAKATELANAYNYDEIN 95 (376)
Q Consensus 17 ~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~-~~~~~~~aa~~~~~~G~d~Ie 95 (376)
+|+|+..=...+.+.| ++.+.--+....+..-.......+...-+. .+..|-+|-+ +++ +..+.+++.+.|.|.
T Consensus 6 CGit~~eda~~a~~~G-aD~iGfif~~~SpR~V~~~~a~~i~~~~~~-~~~~VgVfvn~~~~---~i~~~~~~~~ld~vQ 80 (203)
T 1v5x_A 6 CGITRLEDALLAEALG-AFALGFVLAPGSRRRIAPEAARAIGEALGP-FVVRVGVFRDQPPE---EVLRLMEEARLQVAQ 80 (203)
T ss_dssp CCCCCHHHHHHHHHHT-CSEEEEECCTTCTTBCCHHHHHHHHHHSCS-SSEEEEEESSCCHH---HHHHHHHHTTCSEEE
T ss_pred cCCCcHHHHHHHHHcC-CCEEEEEecCCCCCcCCHHHHHHHHHhCCC-CCCEEEEEeCCCHH---HHHHHHHhhCCCEEE
Confidence 5778877777777776 665433332111100011112223222121 2333444554 444 445566778999999
Q ss_pred ecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccC
Q 017176 96 LNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 175 (376)
Q Consensus 96 iN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r 175 (376)
||.. ..++.+.+ ++. ++|+.--++..-. .++ . +....+|++.+.+.
T Consensus 81 LHG~-----------------e~~~~~~~----l~~--~~~vika~~v~~~--~~l-~--------~~~~~~d~~LlD~~ 126 (203)
T 1v5x_A 81 LHGE-----------------EPPEWAEA----VGR--FYPVIKAFPLEGP--ARP-E--------WADYPAQALLLDGK 126 (203)
T ss_dssp ECSC-----------------CCHHHHHH----HTT--TSCEEEEEECSSS--CCG-G--------GGGSSCSEEEEECS
T ss_pred ECCC-----------------CCHHHHHH----hcc--CCCEEEEEEcCCh--Hhh-h--------hhhcCCCEEEEcCC
Confidence 9831 13344333 222 4677655665322 212 1 12233899988753
Q ss_pred ccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017176 176 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
. +|.+ ...+|+.+..+.. .+.|++..||+ +++.+.+++..++.+|-+.+|.-..|-
T Consensus 127 ~---gGtG-------~~fdW~~l~~~~~--~~~p~~LAGGL-~peNV~~ai~~~p~gVDvsSGvE~~pG 182 (203)
T 1v5x_A 127 R---PGSG-------EAYPRAWAKPLLA--TGRRVILAGGI-APENLEEVLALRPYALDLASGVEEAPG 182 (203)
T ss_dssp S---TTSC-------CCCCGGGGHHHHH--TTSCEEECSSC-CSTTHHHHHHHCCSEEEESGGGEEETT
T ss_pred C---CCCC-------CccCHHHHHhhhc--cCCcEEEECCC-CHHHHHHHHhcCCCEEEeCCceecCCC
Confidence 3 2221 1223665555222 26799999999 778887776668999999999865554
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=93.80 E-value=0.085 Score=53.18 Aligned_cols=63 Identities=14% Similarity=0.243 Sum_probs=48.6
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEch
Q 017176 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGR 237 (376)
+.++|+|.|.+|... |. +...++.+.++++.++++||++ |+|.+.+++..+.+.|||+|.+|.
T Consensus 263 ~~~aG~d~v~i~~~~----G~--------~~~~~~~i~~i~~~~~~~pvi~-~~v~t~~~a~~l~~aGad~I~vg~ 325 (514)
T 1jcn_A 263 LTQAGVDVIVLDSSQ----GN--------SVYQIAMVHYIKQKYPHLQVIG-GNVVTAAQAKNLIDAGVDGLRVGM 325 (514)
T ss_dssp HHHTTCSEEEECCSC----CC--------SHHHHHHHHHHHHHCTTCEEEE-EEECSHHHHHHHHHHTCSEEEECS
T ss_pred HHHcCCCEEEeeccC----Cc--------chhHHHHHHHHHHhCCCCceEe-cccchHHHHHHHHHcCCCEEEECC
Confidence 346999999998642 11 1122577888888777899876 789999999999999999998854
|
| >2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=93.75 E-value=3.9 Score=37.14 Aligned_cols=145 Identities=11% Similarity=0.068 Sum_probs=89.1
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEec
Q 017176 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCR 142 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR 142 (376)
...+++-|.+.+.++....++.+.+.|+|.||+=..+ +.. ..+.+.+.+.+..+++.+ ++|+.+-+|
T Consensus 19 ~p~Icv~l~~~~~~e~~~~~~~~~~~~~D~vElRvD~----------l~~--~~~~~~v~~~l~~lr~~~~~~PiI~T~R 86 (257)
T 2yr1_A 19 EPCICAPVVGEDDRKVLREAEEVCRKQPDLLEWRADF----------FRA--IDDQERVLATANGLRNIAGEIPILFTIR 86 (257)
T ss_dssp SCEEEEEECCSSHHHHHHHHHHHHHSCCSEEEEEGGG----------CTT--TTCHHHHHHHHHHHHHHSSSCCEEEECC
T ss_pred CcEEEEEecCCCHHHHHHHHHHHhhcCCCEEEEEeec----------ccc--cCcHHHHHHHHHHHHHhccCCCEEEEEe
Confidence 3458899999999998888888888899999995432 110 124678888999998877 789999888
Q ss_pred CCCCCC----ccHHHHHHHHHHHhhcCC-ccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecC--
Q 017176 143 IGVDDH----DSYNQLCDFIYKVSSLSP-TRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG-- 215 (376)
Q Consensus 143 ~g~~~~----~~~~~~~~~i~~~~e~~G-vd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGg-- 215 (376)
.-++.. .+-++-.+.+..+++ .| +|+|.|.-... . ....+.+..+.. ++.||++=-
T Consensus 87 t~~eGG~~~~~~~~~~~~ll~~~~~-~g~~d~iDvEl~~~--------------~-~~~~l~~~~~~~-~~kvI~S~Hdf 149 (257)
T 2yr1_A 87 SEREGGQPIPLNEAEVRRLIEAICR-SGAIDLVDYELAYG--------------E-RIADVRRMTEEC-SVWLVVSRHYF 149 (257)
T ss_dssp CTTTTCCCCSSCHHHHHHHHHHHHH-HTCCSEEEEEGGGT--------------T-HHHHHHHHHHHT-TCEEEEEEEES
T ss_pred ecccCCCCCCCCHHHHHHHHHHHHH-cCCCCEEEEECCCC--------------h-hHHHHHHHHHhC-CCEEEEEecCC
Confidence 754311 122233344444444 56 99999864321 0 022222222232 677777632
Q ss_pred --CCCHHHHHHHH----HcCcCeeEEch
Q 017176 216 --INTVDEVNAAL----RKGAHHVMVGR 237 (376)
Q Consensus 216 --I~s~~da~~~l----~~Gad~VmiGR 237 (376)
--+.+++.+.+ +.|||.|=|+.
T Consensus 150 ~~tP~~~el~~~~~~~~~~gaDivKia~ 177 (257)
T 2yr1_A 150 DGTPRKETLLADMRQAERYGADIAKVAV 177 (257)
T ss_dssp SCCCCHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred CCCcCHHHHHHHHHHHHhcCCCEEEEEe
Confidence 23335544433 37888776644
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.61 E-value=0.69 Score=42.80 Aligned_cols=126 Identities=14% Similarity=0.167 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHH
Q 017176 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLC 155 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~ 155 (376)
.+.+.+-++.+.++|+|+|-+.+=.|. +. -|.+.+.+++++.. +.++++--- +|...+..+.+
T Consensus 110 ~~~M~~dI~~~~~~GAdGvVfG~L~~d------g~------iD~~~~~~Li~~a~---~l~vTFHRA--FD~~~d~~~Al 172 (287)
T 3iwp_A 110 IEVMKADIRLAKLYGADGLVFGALTED------GH------IDKELCMSLMAICR---PLPVTFHRA--FDMVHDPMAAL 172 (287)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCBCTT------SC------BCHHHHHHHHHHHT---TSCEEECGG--GGGCSCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeCCC------CC------cCHHHHHHHHHHcC---CCcEEEECc--hhccCCHHHHH
Confidence 355666777888999999988642232 11 36788888888754 356666322 34333333333
Q ss_pred HHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHH-cCcCee
Q 017176 156 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALR-KGAHHV 233 (376)
Q Consensus 156 ~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~-~Gad~V 233 (376)
+ .+. +.|++.|-.||.... .....+.++++++.. .+|+|++-||| +.+.+.++++ +|++-+
T Consensus 173 e---~Li-~lGvdrILTSG~~~~------------a~~Gl~~Lk~Lv~~a~~rI~ImaGGGV-~~~Ni~~l~~~tG~~~~ 235 (287)
T 3iwp_A 173 E---TLL-TLGFERVLTSGCDSS------------ALEGLPLIKRLIEQAKGRIVVMPGGGI-TDRNLQRILEGSGATEF 235 (287)
T ss_dssp H---HHH-HHTCSEEEECTTSSS------------TTTTHHHHHHHHHHHTTSSEEEECTTC-CTTTHHHHHHHHCCSEE
T ss_pred H---HHH-HcCCCEEECCCCCCC------------hHHhHHHHHHHHHHhCCCCEEEECCCc-CHHHHHHHHHhhCCCEE
Confidence 3 333 469999988875321 011266677776543 36999999999 6677788887 898866
Q ss_pred EE
Q 017176 234 MV 235 (376)
Q Consensus 234 mi 235 (376)
=.
T Consensus 236 H~ 237 (287)
T 3iwp_A 236 HC 237 (287)
T ss_dssp EE
T ss_pred eE
Confidence 54
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=93.59 E-value=0.59 Score=44.03 Aligned_cols=101 Identities=14% Similarity=0.100 Sum_probs=63.4
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCC-CCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEE
Q 017176 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCG-CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVK 140 (376)
Q Consensus 63 ~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~g-cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vK 140 (376)
.+.|+. =+...|. -.|++++++|||.|=+... .-.......| ...-..+.+...++.|.+.+ +.||++-
T Consensus 37 ~~~~i~-~~~ayD~----~sA~i~e~aGfdai~vs~~~~a~~~lG~pD----~~~vt~~em~~~~~~I~r~~~~~PviaD 107 (318)
T 1zlp_A 37 EHGSVL-MPGVQDA----LSAAVVEKTGFHAAFVSGYSVSAAMLGLPD----FGLLTTTEVVEATRRITAAAPNLCVVVD 107 (318)
T ss_dssp HSSSEE-EEEECSH----HHHHHHHHTTCSEEEECHHHHHHHHHCCCS----SSCSCHHHHHHHHHHHHHHSSSSEEEEE
T ss_pred CCCcEE-EecCCCH----HHHHHHHHcCCCEEEECcHHHhhHhcCCCC----CCCCCHHHHHHHHHHHHhhccCCCEEEe
Confidence 344443 2444553 3678888999999977431 1100001111 12345677888888888888 8999999
Q ss_pred ecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCc
Q 017176 141 CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK 176 (376)
Q Consensus 141 iR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~ 176 (376)
+-.|+.+ .+...+.+.++ .++|++.|++-+..
T Consensus 108 ~d~Gyg~---~~~v~~tv~~l-~~aGaagv~iED~~ 139 (318)
T 1zlp_A 108 GDTGGGG---PLNVQRFIREL-ISAGAKGVFLEDQV 139 (318)
T ss_dssp CTTCSSS---HHHHHHHHHHH-HHTTCCEEEEECBC
T ss_pred CCCCCCC---HHHHHHHHHHH-HHcCCcEEEECCCC
Confidence 9999753 33444444444 46999999998765
|
| >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A | Back alignment and structure |
|---|
Probab=93.58 E-value=1.1 Score=42.72 Aligned_cols=132 Identities=14% Similarity=0.117 Sum_probs=82.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEec-----------CCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC
Q 017176 75 NLDNLAKATELANAYNYDEINLN-----------CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 143 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN-----------~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~ 143 (376)
..+.+....+.+++.|.+.+--= .++|.-+ -||.-+++..++.++-+ ++.||.+|.-+
T Consensus 89 ~~e~~~~L~~~~~~~Gi~~~st~~d~~svd~l~~~~v~~~K------I~S~~~~n~~LL~~va~-----~gkPviLstGm 157 (349)
T 2wqp_A 89 NEEDEIKLKEYVESKGMIFISTLFSRAAALRLQRMDIPAYK------IGSGECNNYPLIKLVAS-----FGKPIILSTGM 157 (349)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHTCSCEE------ECGGGTTCHHHHHHHHT-----TCSCEEEECTT
T ss_pred CHHHHHHHHHHHHHhCCeEEEeeCCHHHHHHHHhcCCCEEE------ECcccccCHHHHHHHHh-----cCCeEEEECCC
Confidence 45666666667777775554221 2344433 26667788877666533 58999998665
Q ss_pred CCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHH
Q 017176 144 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 223 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~ 223 (376)
. +++|+...+. .+.+.|.+.+.+|+-+. | ..+ ...+++..+..+++.++++||..++--....-+.
T Consensus 158 a-----t~~Ei~~Ave-~i~~~G~~iiLlhc~s~-Y--p~~-----~~~~nL~ai~~lk~~f~~lpVg~sdHt~G~~~~~ 223 (349)
T 2wqp_A 158 N-----SIESIKKSVE-IIREAGVPYALLHCTNI-Y--PTP-----YEDVRLGGMNDLSEAFPDAIIGLSDHTLDNYACL 223 (349)
T ss_dssp C-----CHHHHHHHHH-HHHHHTCCEEEEECCCC-S--SCC-----GGGCCTHHHHHHHHHCTTSEEEEECCSSSSHHHH
T ss_pred C-----CHHHHHHHHH-HHHHcCCCEEEEeccCC-C--CCC-----hhhcCHHHHHHHHHHCCCCCEEeCCCCCcHHHHH
Confidence 2 3444443332 33456778888896432 2 111 1234577788887776689998776666667777
Q ss_pred HHHHcCcC
Q 017176 224 AALRKGAH 231 (376)
Q Consensus 224 ~~l~~Gad 231 (376)
.++..|||
T Consensus 224 AAvAlGA~ 231 (349)
T 2wqp_A 224 GAVALGGS 231 (349)
T ss_dssp HHHHHTCC
T ss_pred HHHHhCCC
Confidence 78888999
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.52 E-value=0.49 Score=43.92 Aligned_cols=159 Identities=12% Similarity=0.028 Sum_probs=87.0
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017176 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 63 ~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
.+.|+. =+...|. -.|++++++|||.|=+..++ ...+. .| |-....-..+.+...++.|.+.++.||++-+-
T Consensus 19 ~~~~i~-~~~a~D~----~sA~i~e~aGf~ai~vs~s~-~a~~~-lG-~pD~~~vt~~em~~~~~~I~r~~~~PviaD~d 90 (287)
T 3b8i_A 19 SSRCYH-TASVFDP----MSARIAADLGFECGILGGSV-ASLQV-LA-APDFALITLSEFVEQATRIGRVARLPVIADAD 90 (287)
T ss_dssp SSCCEE-CEECCSH----HHHHHHHHTTCSCEEECHHH-HHHHH-HS-CCSSSCSCHHHHHHHHHHHHTTCSSCEEEECT
T ss_pred CCCcEE-EecCCCH----HHHHHHHHcCCCEEEeCcHH-HHHHh-cC-CCCCCCCCHHHHHHHHHHHHhcCCCCEEEECC
Confidence 444443 2445554 46788889999999774220 10000 00 11112345678888899999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHhhcCCccEEEEccCcc-ccCCCCCCCCCCCCccc--HHHHHHHHhhC--CCCeEEEecCC-
Q 017176 143 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-LLNGISPAENRTIPPLK--YEYYYALLRDF--PDLTFTLNGGI- 216 (376)
Q Consensus 143 ~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~-~~~g~~~~~~~~~~~~~--~~~v~~~~~~~--~~ipVi~nGgI- 216 (376)
.|+.+ .+++.+.+.++. ++|++.|++-+... ..-|+. .+. +-+.. .+.|+.+++.. ++.-|++=-+-
T Consensus 91 ~Gyg~---~~~~~~~v~~l~-~aGa~gv~iED~~~pKrcgh~--~gk-l~~~~e~~~~I~aa~~a~~~~~~~i~aRtdaa 163 (287)
T 3b8i_A 91 HGYGN---ALNVMRTVVELE-RAGIAALTIEDTLLPAQFGRK--STD-LICVEEGVGKIRAALEARVDPALTIIARTNAE 163 (287)
T ss_dssp TCSSS---HHHHHHHHHHHH-HHTCSEEEEECBCCSCCTTTC--TTC-BCCHHHHHHHHHHHHHHCCSTTSEEEEEEETT
T ss_pred CCCCC---HHHHHHHHHHHH-HhCCeEEEEcCCCCccccCCC--CCC-ccCHHHHHHHHHHHHHcCCCCCcEEEEechhh
Confidence 98653 334444444444 59999999987652 111221 111 22211 22344444432 23444443332
Q ss_pred -CCHH----HHHHHHHcCcCeeEEc
Q 017176 217 -NTVD----EVNAALRKGAHHVMVG 236 (376)
Q Consensus 217 -~s~~----da~~~l~~Gad~VmiG 236 (376)
...+ ++..+.+.|||+|.+=
T Consensus 164 ~~gl~~ai~Ra~ay~eAGAd~i~~e 188 (287)
T 3b8i_A 164 LIDVDAVIQRTLAYQEAGADGICLV 188 (287)
T ss_dssp TSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred hcCHHHHHHHHHHHHHcCCCEEEec
Confidence 1112 2333344899999884
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=93.41 E-value=0.42 Score=45.02 Aligned_cols=96 Identities=15% Similarity=0.088 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHHhcccCccEEEEecCCCC-CCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccH
Q 017176 117 LDPKFVGEAMSVIAANTNVPVSVKCRIGVD-DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195 (376)
Q Consensus 117 ~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~-~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~ 195 (376)
..++.+.+.++.+++.++.|+.|-+-.... ...++++.++ .+.+.|+|.|++|.+.. .
T Consensus 50 ~s~~~l~~~i~~i~~~~~~p~~v~l~v~~~~~~~~~~~~~~----~~~~~g~d~V~~~~g~p-----------------~ 108 (328)
T 2gjl_A 50 PSPEALAAEIARCRELTDRPFGVNLTLLPTQKPVPYAEYRA----AIIEAGIRVVETAGNDP-----------------G 108 (328)
T ss_dssp SSHHHHHHHHHHHHHHCSSCCEEEEEECCCSSCCCHHHHHH----HHHHTTCCEEEEEESCC-----------------H
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEeccccccCccHHHHHH----HHHhcCCCEEEEcCCCc-----------------H
Confidence 347888888999888777777665443210 0123444433 23468999999996421 3
Q ss_pred HHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEE-ch
Q 017176 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV-GR 237 (376)
Q Consensus 196 ~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vmi-GR 237 (376)
+.+..+.+ . ++||+. .+.+.+++..+.+.|+|+|.+ |+
T Consensus 109 ~~~~~l~~-~-gi~vi~--~v~t~~~a~~~~~~GaD~i~v~g~ 147 (328)
T 2gjl_A 109 EHIAEFRR-H-GVKVIH--KCTAVRHALKAERLGVDAVSIDGF 147 (328)
T ss_dssp HHHHHHHH-T-TCEEEE--EESSHHHHHHHHHTTCSEEEEECT
T ss_pred HHHHHHHH-c-CCCEEe--eCCCHHHHHHHHHcCCCEEEEECC
Confidence 44555544 3 788884 488999999988899999998 54
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=93.41 E-value=0.7 Score=44.31 Aligned_cols=97 Identities=18% Similarity=0.127 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHHhcccCccEEEEecCCCCC---Cc-----------------------------cHHHHHHHHHHHhhc
Q 017176 117 LDPKFVGEAMSVIAANTNVPVSVKCRIGVDD---HD-----------------------------SYNQLCDFIYKVSSL 164 (376)
Q Consensus 117 ~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~---~~-----------------------------~~~~~~~~i~~~~e~ 164 (376)
..++.+.+.++.+++.++.|+.|.+-..... .. .+++. ..++.+
T Consensus 45 ~s~~~l~~~i~~~~~~~~~p~gVnl~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~ 120 (369)
T 3bw2_A 45 KTADGMYQEIKRLRGLTGRPFGVNVFMPQPELAESGAVEVYAHQLAGEAAWYETELGDPDGGRDDGYDAK----LAVLLD 120 (369)
T ss_dssp SCHHHHHHHHHHHHHHCCSCEEEEEECCCCCC---CHHHHHHHHTHHHHHHTTCCCCCSCSCSSTTHHHH----HHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcccHHHHHHHHHHHHHHHHHcCCCcCcccccccccHHHH----HHHHHh
Confidence 3578888888888887777877765332111 00 12222 233456
Q ss_pred CCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEE-ch
Q 017176 165 SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV-GR 237 (376)
Q Consensus 165 ~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vmi-GR 237 (376)
.|++.|.+|.+.. ..+.+.++.+. +++|+. .+.+.+++..+.+.|+|+|.+ |+
T Consensus 121 ~g~~~V~~~~g~~----------------~~~~i~~~~~~--g~~v~~--~v~t~~~a~~a~~~GaD~i~v~g~ 174 (369)
T 3bw2_A 121 DPVPVVSFHFGVP----------------DREVIARLRRA--GTLTLV--TATTPEEARAVEAAGADAVIAQGV 174 (369)
T ss_dssp SCCSEEEEESSCC----------------CHHHHHHHHHT--TCEEEE--EESSHHHHHHHHHTTCSEEEEECT
T ss_pred cCCCEEEEeCCCC----------------cHHHHHHHHHC--CCeEEE--ECCCHHHHHHHHHcCCCEEEEeCC
Confidence 8999999987531 14555565542 778776 578999999888899999999 65
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=93.37 E-value=1.2 Score=41.01 Aligned_cols=141 Identities=13% Similarity=0.159 Sum_probs=81.1
Q ss_pred HHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHH
Q 017176 81 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 160 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~ 160 (376)
-.|+.++++|||.|=+...+ ..... | |-....-..+.+...++.|.+.++.||++-+-.|+.+ +.+...+.+.+
T Consensus 27 ~sA~~~~~aG~~ai~vsg~s-~a~~~--G-~pD~~~vt~~em~~~~~~I~~~~~~pviaD~d~Gyg~--~~~~~~~~v~~ 100 (275)
T 2ze3_A 27 ASARLLEAAGFTAIGTTSAG-IAHAR--G-RTDGQTLTRDEMGREVEAIVRAVAIPVNADIEAGYGH--APEDVRRTVEH 100 (275)
T ss_dssp HHHHHHHHHTCSCEEECHHH-HHHHS--C-CCSSSSSCHHHHHHHHHHHHHHCSSCEEEECTTCSSS--SHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEECcHH-HHHhC--C-CCCCCCCCHHHHHHHHHHHHhhcCCCEEeecCCCCCC--CHHHHHHHHHH
Confidence 36777888999999775211 00011 1 1111234567788888888888889999999999753 23344444444
Q ss_pred HhhcCCccEEEEccCccccCCCCCCCCCCCCccc--HHHHHHHHhhCC--CCeEEEecCCCC--------H-HHHHHHH-
Q 017176 161 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK--YEYYYALLRDFP--DLTFTLNGGINT--------V-DEVNAAL- 226 (376)
Q Consensus 161 ~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~--~~~v~~~~~~~~--~ipVi~nGgI~s--------~-~da~~~l- 226 (376)
+. ++|++.|++-+.... .| ..+-+.. .+.|+.+++... ++|+..+|.... . +.+++++
T Consensus 101 l~-~aGaagv~iED~~~~-~~------k~l~~~~e~~~~I~aa~~a~~~~g~~~~i~aRtda~~~~~g~~~~~~~~~ai~ 172 (275)
T 2ze3_A 101 FA-ALGVAGVNLEDATGL-TP------TELYDLDSQLRRIEAARAAIDASGVPVFLNARTDTFLKGHGATDEERLAETVR 172 (275)
T ss_dssp HH-HTTCSEEEEECBCSS-SS------SCBCCHHHHHHHHHHHHHHHHHHTSCCEEEEECCTTTTTCSSSHHHHHHHHHH
T ss_pred HH-HcCCcEEEECCCcCC-CC------CccCCHHHHHHHHHHHHHhHhhcCCCeEEEEechhhhccccccchhhHHHHHH
Confidence 44 699999999876531 11 1111111 223333333211 577777776654 1 2233322
Q ss_pred ------HcCcCeeEE
Q 017176 227 ------RKGAHHVMV 235 (376)
Q Consensus 227 ------~~Gad~Vmi 235 (376)
+.|||+|.+
T Consensus 173 Ra~ay~eAGAd~i~~ 187 (275)
T 2ze3_A 173 RGQAYADAGADGIFV 187 (275)
T ss_dssp HHHHHHHTTCSEEEC
T ss_pred HHHHHHHCCCCEEEE
Confidence 369999988
|
| >4h1z_A Enolase Q92ZS5; dehydratase, magnesium binding site, enzyme function initiat isomerase; 2.01A {Sinorhizobium meliloti} PDB: 2ppg_A | Back alignment and structure |
|---|
Probab=93.35 E-value=1 Score=43.93 Aligned_cols=123 Identities=7% Similarity=0.025 Sum_probs=81.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccH
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSY 151 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~ 151 (376)
..++.+++.++...+.||..+-+..|.. . +...+.++++|+.+ ++.+.|-..-+|+ .
T Consensus 187 ~~~~~~~~~a~~~~~~G~~~~K~k~g~~-------------~----~~~~~~v~~vR~~~g~~~~l~vDaN~~~~----~ 245 (412)
T 4h1z_A 187 DTRAKRAELAAAWQAKGFSSFKFASPVA-------------D----DGVAKEMEILRERLGPAVRIACDMHWAHT----A 245 (412)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEEGGGC-------------T----TCHHHHHHHHHHHHCSSSEEEEECCSCCC----H
T ss_pred CcHHHHHHHHHHHHhcCcceeccccccc-------------h----hhHHHHHHHHHhccCCeEEEEeccccCCC----H
Confidence 4688888888888889999998753211 1 11234456677665 3455554444553 4
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCc
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGA 230 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Ga 230 (376)
++.+++ .+.+++.|+.+|. . .+++-+++.++++.+.. ++||.+.=.+.+..++.++++ ..+
T Consensus 246 ~~A~~~-~~~l~~~~l~~iE----q------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~a~ 307 (412)
T 4h1z_A 246 SEAVAL-IKAMEPHGLWFAE----A------------PVRTEDIDGLARVAASV-STAIAVGEEWRTVHDMVPRVARRAL 307 (412)
T ss_dssp HHHHHH-HHHHGGGCEEEEE----C------------CSCTTCHHHHHHHHHHC-SSEEEECTTCCSHHHHHHHHHTTCC
T ss_pred HHHHHH-HHhhcccccceec----C------------CCCccchHHHHHHHhhc-CCccccCCcccchHhHHHHHHcCCC
Confidence 454554 3456778887764 1 12233477777887775 899999889999999999998 456
Q ss_pred CeeEE
Q 017176 231 HHVMV 235 (376)
Q Consensus 231 d~Vmi 235 (376)
|.|++
T Consensus 308 div~~ 312 (412)
T 4h1z_A 308 AIVQP 312 (412)
T ss_dssp SEECC
T ss_pred CEEEe
Confidence 76653
|
| >3cyj_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, isomerase, PSI-2; 2.30A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=93.32 E-value=1.9 Score=41.24 Aligned_cols=122 Identities=11% Similarity=0.004 Sum_probs=81.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 152 (376)
+++++.+.++.+.+.||..+-+..|. +++.-.+.++++++.+ ++.+.+-..-+|+ .+
T Consensus 144 ~~~~~~~~a~~~~~~G~~~~KiKvG~-----------------~~~~d~~~v~avr~a~g~~~~l~vDaN~~~~----~~ 202 (372)
T 3cyj_A 144 PLRRLQEQLGGWAAAGIPRVKMKVGR-----------------EPEKDPERVRAAREAIGESVELMVDANGAYT----RK 202 (372)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCS-----------------SGGGHHHHHHHHHHHHCTTSEEEEECTTCSC----HH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCC-----------------CHHHHHHHHHHHHHHhCCCCeEEEECCCCCC----HH
Confidence 45778777777778899999885431 2334456677777765 3556665555554 44
Q ss_pred HHHHHHHHHhhcC-CccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCC-CeEEEecCCCCHHHHHHHHHcCc
Q 017176 153 QLCDFIYKVSSLS-PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD-LTFTLNGGINTVDEVNAALRKGA 230 (376)
Q Consensus 153 ~~~~~i~~~~e~~-Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~-ipVi~nGgI~s~~da~~~l~~Ga 230 (376)
+.++++. .+++. ++.+|. . .+++-+++..+++.+..+. +||.+.=.+.+..++.++ ...+
T Consensus 203 ~a~~~~~-~l~~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~~~~ipIa~dE~~~~~~~~~~~-~~a~ 264 (372)
T 3cyj_A 203 QALYWAG-AFAREAGISYLE----E------------PVSSEDREGLRLLRDRGPGGVAIAAGEYEWTLPQLHDL-AGCV 264 (372)
T ss_dssp HHHHHHH-HHHHHHCCCEEE----C------------SSCTTCHHHHHHHHHHSCTTCEEEECTTCCSHHHHHHH-HTTC
T ss_pred HHHHHHH-HHHhhcCCcEEE----C------------CCCcccHHHHHHHHHhCCCCCCEECCCCccCHHHHHHH-hCCC
Confidence 5555544 35667 777765 1 1223347777777776532 799998899999999988 7678
Q ss_pred CeeEE
Q 017176 231 HHVMV 235 (376)
Q Consensus 231 d~Vmi 235 (376)
|.|++
T Consensus 265 d~i~i 269 (372)
T 3cyj_A 265 DILQA 269 (372)
T ss_dssp SEEEE
T ss_pred CEEec
Confidence 99887
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=93.29 E-value=0.32 Score=42.90 Aligned_cols=97 Identities=16% Similarity=0.150 Sum_probs=57.2
Q ss_pred HHHHHHhcccCccEEEEecCCCCC-----CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHH
Q 017176 124 EAMSVIAANTNVPVSVKCRIGVDD-----HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY 198 (376)
Q Consensus 124 eiv~~v~~~~~~pv~vKiR~g~~~-----~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v 198 (376)
+.++++++.++.|+...++..+.+ ..+.+++ .. +.++|+|.+++|..... .+ . ....+.+
T Consensus 46 ~~i~~i~~~~~~pv~~~~~~~~~~~~~~i~~~~~~i----~~-~~~~Gad~v~l~~~~~~----~p----~--~~~~~~i 110 (223)
T 1y0e_A 46 EDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEV----DE-LIESQCEVIALDATLQQ----RP----K--ETLDELV 110 (223)
T ss_dssp HHHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHHH----HH-HHHHTCSEEEEECSCSC----CS----S--SCHHHHH
T ss_pred HHHHHHHHhcCCCEEeeeccCCCccccccCCcHHHH----HH-HHhCCCCEEEEeeeccc----Cc----c--cCHHHHH
Confidence 345566666788884322222111 0122222 22 23589999999964321 00 0 0114566
Q ss_pred HHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEch
Q 017176 199 YALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 199 ~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGR 237 (376)
..+++.+++++++. ++.+.+++.++.+.|+|.|+++-
T Consensus 111 ~~~~~~~~~~~v~~--~~~t~~e~~~~~~~G~d~i~~~~ 147 (223)
T 1y0e_A 111 SYIRTHAPNVEIMA--DIATVEEAKNAARLGFDYIGTTL 147 (223)
T ss_dssp HHHHHHCTTSEEEE--ECSSHHHHHHHHHTTCSEEECTT
T ss_pred HHHHHhCCCceEEe--cCCCHHHHHHHHHcCCCEEEeCC
Confidence 67776666777765 67899999988889999998753
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=93.24 E-value=0.22 Score=48.49 Aligned_cols=61 Identities=15% Similarity=0.215 Sum_probs=44.1
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017176 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
+.++|+|.|.+.... |.+ ....+.+.++++.+ ++|||+ |++.|.+++..+.+.|||+|.+|
T Consensus 152 lveaGvdvIvldta~----G~~--------~~~~e~I~~ik~~~-~i~Vi~-g~V~t~e~A~~a~~aGAD~I~vG 212 (400)
T 3ffs_A 152 LVEAGVDVIVLDSAH----GHS--------LNIIRTLKEIKSKM-NIDVIV-GNVVTEEATKELIENGADGIKVG 212 (400)
T ss_dssp HHHHTCSEEEECCSC----CSB--------HHHHHHHHHHHTTC-CCEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHcCCCEEEEeCCC----CCc--------ccHHHHHHHHHhcC-CCeEEE-eecCCHHHHHHHHHcCCCEEEEe
Confidence 346899999874221 110 11145667777665 888886 78899999999999999999996
|
| >4hpn_A Putative uncharacterized protein; enolase, enzyme function initiative, EFI, structural genomic isomerase; 1.60A {Agrobacterium tumefaciens} PDB: 4ggb_A | Back alignment and structure |
|---|
Probab=93.20 E-value=1.4 Score=42.26 Aligned_cols=121 Identities=7% Similarity=0.031 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHHH
Q 017176 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQ 153 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 153 (376)
+++.++.++...+.||..+-+..|. +++.-.+.++++|+.+ ++.+.|-.--+|+ .++
T Consensus 145 ~~~~~~~~~~~~~~Gf~~~K~k~g~-----------------~~~~di~~v~avr~~~g~~~~l~vDaN~~~~----~~~ 203 (378)
T 4hpn_A 145 VSDNASEMAERRAEGFHACKIKIGF-----------------GVEEDLRVIAAVREAIGPDMRLMIDANHGYT----VTE 203 (378)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCS-----------------CHHHHHHHHHHHHHHHTTTSEEEEECTTCCC----HHH
T ss_pred HHHHHHHHHHHHHhccceecccccC-----------------ChHHHHHHHHHHHHhcCCcEEEEEecCcccC----HHH
Confidence 3444555555556799998775431 2455567788888876 4555555555553 445
Q ss_pred HHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCe
Q 017176 154 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHH 232 (376)
Q Consensus 154 ~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~ 232 (376)
.++++ +.+++.++.+|. ..+++-+++.++++.+.. ++||.+.=.+.+..++.++++ ..+|.
T Consensus 204 A~~~~-~~l~~~~i~~iE----------------eP~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~i~~~a~d~ 265 (378)
T 4hpn_A 204 AITLG-DRAAGFGIDWFE----------------EPVVPEQLDAYARVRAGQ-PIPVAGGETWHGRYGMWQALSAGAVDI 265 (378)
T ss_dssp HHHHH-HHHGGGCCSCEE----------------CCSCTTCHHHHHHHHHHS-SSCEEECTTCCHHHHHHHHHHTTCCSE
T ss_pred HHHHH-hhhhhcccchhh----------------cCCCccchhhhHHHHhhC-CceeeCCcCccchHhHHHHHHcCCCCE
Confidence 55543 445677877655 112333477777887765 899999999999999999998 56788
Q ss_pred eEE
Q 017176 233 VMV 235 (376)
Q Consensus 233 Vmi 235 (376)
|++
T Consensus 266 i~~ 268 (378)
T 4hpn_A 266 LQP 268 (378)
T ss_dssp ECC
T ss_pred Eee
Confidence 754
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=93.20 E-value=0.38 Score=42.89 Aligned_cols=135 Identities=14% Similarity=0.124 Sum_probs=77.7
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecC--CCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe
Q 017176 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNC--GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 141 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~--gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 141 (376)
...++..|...+...+.+.++.+.+.|+|.|.+-. |.-.++ . .+| .++++++++.++.|+.|-+
T Consensus 6 ~~~i~psi~a~d~~~l~~~i~~~~~~Gad~i~l~i~Dg~fv~~-~---~~~----------~~~~~~lr~~~~~~~~v~l 71 (228)
T 1h1y_A 6 AAKIAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPN-L---TIG----------APVIQSLRKHTKAYLDCHL 71 (228)
T ss_dssp CCEEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSC-B---CBC----------HHHHHHHHTTCCSEEEEEE
T ss_pred CCeEEEEeeeCCHHHHHHHHHHHHHcCCCEEEEEEecCCcCcc-h---hhC----------HHHHHHHHhhcCCcEEEEE
Confidence 34477788888888899999999999999876642 211111 0 122 2667777777666666544
Q ss_pred cCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCccc-HHHHHHHHhhCCCCeEEEecCCCCHH
Q 017176 142 RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK-YEYYYALLRDFPDLTFTLNGGINTVD 220 (376)
Q Consensus 142 R~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~-~~~v~~~~~~~~~ipVi~nGgI~s~~ 220 (376)
-. .+...+ + ...+ ++|+|.|++|+.... .. .+.+.++.+ . ++.++..=.-.++.
T Consensus 72 mv--~d~~~~---i---~~~~-~agad~v~vH~~~~~--------------~~~~~~~~~i~~-~-g~~igv~~~p~t~~ 126 (228)
T 1h1y_A 72 MV--TNPSDY---V---EPLA-KAGASGFTFHIEVSR--------------DNWQELIQSIKA-K-GMRPGVSLRPGTPV 126 (228)
T ss_dssp ES--SCGGGG---H---HHHH-HHTCSEEEEEGGGCT--------------TTHHHHHHHHHH-T-TCEEEEEECTTSCG
T ss_pred Ee--cCHHHH---H---HHHH-HcCCCEEEECCCCcc--------------cHHHHHHHHHHH-c-CCCEEEEEeCCCCH
Confidence 43 222221 1 1222 489999999986421 01 233444443 3 55555433334443
Q ss_pred H-HHHHHHc--CcCeeEEch
Q 017176 221 E-VNAALRK--GAHHVMVGR 237 (376)
Q Consensus 221 d-a~~~l~~--Gad~VmiGR 237 (376)
+ ++..+.. ++|.|.++.
T Consensus 127 e~~~~~~~~~~~~d~vl~~s 146 (228)
T 1h1y_A 127 EEVFPLVEAENPVELVLVMT 146 (228)
T ss_dssp GGGHHHHHSSSCCSEEEEES
T ss_pred HHHHHHHhcCCCCCEEEEEe
Confidence 3 3344444 899999853
|
| >1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6 | Back alignment and structure |
|---|
Probab=93.15 E-value=1.5 Score=42.33 Aligned_cols=132 Identities=11% Similarity=0.053 Sum_probs=80.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEe-----------cCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC
Q 017176 75 NLDNLAKATELANAYNYDEINL-----------NCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 143 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~Iei-----------N~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~ 143 (376)
..+.+....+.+++.|.+.+-- ..++|.-+ -||.-+++..++.++-+ ++.||.+|.-+
T Consensus 99 ~~e~~~~L~~~~~~~Gi~~~stpfD~~svd~l~~~~vd~~K------IgS~~~~N~pLL~~va~-----~gKPViLStGm 167 (385)
T 1vli_A 99 PAEWILPLLDYCREKQVIFLSTVCDEGSADLLQSTSPSAFK------IASYEINHLPLLKYVAR-----LNRPMIFSTAG 167 (385)
T ss_dssp CGGGHHHHHHHHHHTTCEEECBCCSHHHHHHHHTTCCSCEE------ECGGGTTCHHHHHHHHT-----TCSCEEEECTT
T ss_pred CHHHHHHHHHHHHHcCCcEEEccCCHHHHHHHHhcCCCEEE------ECcccccCHHHHHHHHh-----cCCeEEEECCC
Confidence 3456666666666766544421 12344433 26667788877666533 58999998765
Q ss_pred CCCCCccHHHHHHHHHHHhhcCCc-cEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCC-HHH
Q 017176 144 GVDDHDSYNQLCDFIYKVSSLSPT-RHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT-VDE 221 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~~Gv-d~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s-~~d 221 (376)
. +++|+...+ ..+.+.|. +.+.+|+-+. | ..+ ...+++..+..+++.++++||..++--.. ..-
T Consensus 168 a-----Tl~Ei~~Av-e~i~~~Gn~~iiLlhc~s~-Y--Ptp-----~~~~nL~aI~~Lk~~f~~lpVG~SdHt~G~~~~ 233 (385)
T 1vli_A 168 A-----EISDVHEAW-RTIRAEGNNQIAIMHCVAK-Y--PAP-----PEYSNLSVIPMLAAAFPEAVIGFSDHSEHPTEA 233 (385)
T ss_dssp C-----CHHHHHHHH-HHHHTTTCCCEEEEEECSS-S--SCC-----GGGCCTTHHHHHHHHSTTSEEEEEECCSSSSHH
T ss_pred C-----CHHHHHHHH-HHHHHCCCCcEEEEeccCC-C--CCC-----hhhcCHHHHHHHHHHcCCCCEEeCCCCCCchHH
Confidence 3 344544433 33456787 6677785332 2 111 12345667777777766899977766555 677
Q ss_pred HHHHHHcCcC
Q 017176 222 VNAALRKGAH 231 (376)
Q Consensus 222 a~~~l~~Gad 231 (376)
+..++..||+
T Consensus 234 ~~AAvAlGA~ 243 (385)
T 1vli_A 234 PCAAVRLGAK 243 (385)
T ss_dssp HHHHHHTTCS
T ss_pred HHHHHHcCCC
Confidence 7778888999
|
| >3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=93.09 E-value=0.29 Score=45.69 Aligned_cols=63 Identities=14% Similarity=0.216 Sum_probs=46.6
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhh-CCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD-FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~-~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
++|+|.|-+...+ .+.+++.++. .+++++.++||| +.+.+.+..++|+|++.+|.....-
T Consensus 227 ~aGaD~I~LDn~~------------------~~~l~~av~~i~~~v~ieaSGGI-~~~~i~~~a~tGVD~isvG~lt~sa 287 (298)
T 3gnn_A 227 AHGARSVLLDNFT------------------LDMMRDAVRVTEGRAVLEVSGGV-NFDTVRAIAETGVDRISIGALTKDV 287 (298)
T ss_dssp HTTCEEEEEESCC------------------HHHHHHHHHHHTTSEEEEEESSC-STTTHHHHHHTTCSEEECGGGGTSC
T ss_pred HcCCCEEEECCCC------------------HHHHHHHHHHhCCCCeEEEEcCC-CHHHHHHHHHcCCCEEEECCeecCC
Confidence 4899999987643 2333333332 347899999999 7888888889999999999966555
Q ss_pred Cch
Q 017176 243 PWY 245 (376)
Q Consensus 243 P~l 245 (376)
|++
T Consensus 288 ~~l 290 (298)
T 3gnn_A 288 RAT 290 (298)
T ss_dssp CCC
T ss_pred Ccc
Confidence 654
|
| >3qld_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, isomerase; HET: MSE; 1.85A {Alicyclobacillus acidocaldarius LAA1} | Back alignment and structure |
|---|
Probab=93.07 E-value=1.5 Score=42.39 Aligned_cols=128 Identities=15% Similarity=0.216 Sum_probs=84.9
Q ss_pred CEEEEecCCC-HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecC
Q 017176 66 PIVLQIGGSN-LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRI 143 (376)
Q Consensus 66 p~~vQL~g~~-~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~ 143 (376)
|+...+...+ ++.+.+.++...+.||..+-+..| | + .+. +.+++||+.+ ++.+.+-..-
T Consensus 139 ~~~~~~~~~~~~e~~~~~~~~~~~~G~~~~K~Kv~-~----------~----~d~----~~v~avR~~~~~~~l~vDaN~ 199 (388)
T 3qld_A 139 EVSATLGMSESLDVLIQSVDAAVEQGFRRVKLKIA-P----------G----RDR----AAIKAVRLRYPDLAIAADANG 199 (388)
T ss_dssp EBEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECB-T----------T----BSH----HHHHHHHHHCTTSEEEEECTT
T ss_pred EEeEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeC-c----------H----HHH----HHHHHHHHHCCCCeEEEECCC
Confidence 4444455444 999999998888889999988653 1 1 233 4566666655 4556665555
Q ss_pred CCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHH
Q 017176 144 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 223 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~ 223 (376)
+|+.. +... + +.+++.++.+|- ..+++.+++..+++.+.. ++||.+.=.+.+..++.
T Consensus 200 ~~~~~----~A~~-~-~~l~~~~i~~iE----------------eP~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~ 256 (388)
T 3qld_A 200 SYRPE----DAPV-L-RQLDAYDLQFIE----------------QPLPEDDWFDLAKLQASL-RTPVCLDESVRSVRELK 256 (388)
T ss_dssp CCCGG----GHHH-H-HHGGGGCCSCEE----------------CCSCTTCHHHHHHHHHHC-SSCEEESTTCCSHHHHH
T ss_pred CCChH----HHHH-H-HHHhhCCCcEEE----------------CCCCcccHHHHHHHHHhC-CCCEEeCCCCCCHHHHH
Confidence 66542 2222 2 445667776654 112333467777777765 89999988899999999
Q ss_pred HHHH-cCcCeeEE
Q 017176 224 AALR-KGAHHVMV 235 (376)
Q Consensus 224 ~~l~-~Gad~Vmi 235 (376)
++++ ..+|.|++
T Consensus 257 ~~~~~~a~d~v~~ 269 (388)
T 3qld_A 257 LTARLGAARVLNV 269 (388)
T ss_dssp HHHHHTCCSEEEE
T ss_pred HHHHcCCCCEEEE
Confidence 9998 55898887
|
| >1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=93.03 E-value=0.93 Score=43.69 Aligned_cols=120 Identities=18% Similarity=0.235 Sum_probs=80.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHH
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~ 152 (376)
.+++++.+.++.+.+.||..+-+..| | ..+. +.+++||+.+ ++.+.+-..-+|+. +
T Consensus 160 ~~~~~~~~~a~~~~~~G~~~~KiKvg-~--------------~~d~----~~v~avr~a~~~~~l~vDaN~~~~~-~--- 216 (386)
T 1wue_A 160 EDLPQLLKQVQLAVEKGYQRVKLKIR-P--------------GYDV----EPVALIRQHFPNLPLMVDANSAYTL-A--- 216 (386)
T ss_dssp SCHHHHHHHHHHHHHTTCSCEEEECB-T--------------TBSH----HHHHHHHHHCTTSCEEEECTTCCCG-G---
T ss_pred CCHHHHHHHHHHHHHhhhheEEEeeC-c--------------HHHH----HHHHHHHHhCCCCeEEEeCCCCCCH-H---
Confidence 46888988888887889999988643 1 1233 4456666654 45566666656653 2
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcC
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAH 231 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad 231 (376)
+. ++ .+.+++.++.+|. . .+++-+++..+++.+.. ++||.+.=.+.+..++.++++ ..+|
T Consensus 217 ~a-~~-~~~l~~~~i~~iE----q------------P~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~i~~~a~d 277 (386)
T 1wue_A 217 DL-PQ-LQRLDHYQLAMIE----Q------------PFAADDFLDHAQLQREL-KTRICLDENIRSLKDCQVALALGSCR 277 (386)
T ss_dssp GH-HH-HHGGGGSCCSCEE----C------------CSCTTCSHHHHHHHTTC-SSCEEECTTCCSHHHHHHHHHHTCCS
T ss_pred HH-HH-HHHHHhCCCeEEe----C------------CCCcccHHHHHHHHHhc-CCCEEeCCccCCHHHHHHHHHcCCCC
Confidence 22 33 3456777777665 1 12223366667776654 899999888999999999998 5589
Q ss_pred eeEE
Q 017176 232 HVMV 235 (376)
Q Consensus 232 ~Vmi 235 (376)
.|++
T Consensus 278 ~i~i 281 (386)
T 1wue_A 278 SINL 281 (386)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8887
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=92.97 E-value=0.14 Score=51.16 Aligned_cols=63 Identities=24% Similarity=0.335 Sum_probs=48.4
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEch
Q 017176 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGR 237 (376)
+.++|+|.|.+|... |. ....++.+.++++.++++||+. |++.+.+++..+.+.|+|+|.+|-
T Consensus 245 l~~aGvd~v~i~~~~----G~--------~~~~~e~i~~i~~~~p~~pvi~-g~~~t~e~a~~l~~~G~d~I~v~~ 307 (494)
T 1vrd_A 245 LVKAGVDVIVIDTAH----GH--------SRRVIETLEMIKADYPDLPVVA-GNVATPEGTEALIKAGADAVKVGV 307 (494)
T ss_dssp HHHTTCSEEEECCSC----CS--------SHHHHHHHHHHHHHCTTSCEEE-EEECSHHHHHHHHHTTCSEEEECS
T ss_pred HHHhCCCEEEEEecC----Cc--------hHHHHHHHHHHHHHCCCceEEe-CCcCCHHHHHHHHHcCCCEEEEcC
Confidence 346899999997642 21 1123678888888877899876 788999999988889999999843
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=92.93 E-value=0.54 Score=43.76 Aligned_cols=100 Identities=11% Similarity=0.073 Sum_probs=64.0
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC
Q 017176 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 143 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~ 143 (376)
+.|+. =+...|. -.|++++++|||.|=+...+ ...+ .| |-....-..+.+...++.|.+.++.||++-+-.
T Consensus 14 ~~~i~-~~~a~D~----~sA~~~~~aG~~ai~vs~~~-~a~~--~G-~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~ 84 (290)
T 2hjp_A 14 GRLFT-AMAAHNP----LVAKLAEQAGFGGIWGSGFE-LSAS--YA-VPDANILSMSTHLEMMRAIASTVSIPLIADIDT 84 (290)
T ss_dssp CCCEE-EEECSSH----HHHHHHHHHTCSEEEECHHH-HHHH--TT-SCTTTCSCHHHHHHHHHHHHTTCSSCEEEECTT
T ss_pred CCcEE-EecCCCH----HHHHHHHHcCCCEEEEChHH-HHHh--CC-CCCCCCCCHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 34443 3455564 36778888999999775210 0000 01 111123456788888999999999999999999
Q ss_pred CCCCCccHHHHHHHHHHHhhcCCccEEEEccCc
Q 017176 144 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK 176 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~ 176 (376)
|+.+ .+...+.+.++. ++|++.|++-+..
T Consensus 85 Gyg~---~~~~~~~v~~l~-~aGa~gv~iED~~ 113 (290)
T 2hjp_A 85 GFGN---AVNVHYVVPQYE-AAGASAIVMEDKT 113 (290)
T ss_dssp TTSS---HHHHHHHHHHHH-HHTCSEEEEECBC
T ss_pred CCCC---HHHHHHHHHHHH-HhCCeEEEEcCCC
Confidence 9653 334444444444 5999999998765
|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A | Back alignment and structure |
|---|
Probab=92.93 E-value=1.9 Score=39.67 Aligned_cols=156 Identities=12% Similarity=0.092 Sum_probs=88.5
Q ss_pred CCChHHHHHHHHHhCCCcEEEecceeec-ccccccc---hhhhhh------ccCCCCCCEEEEec-C--CCHHHHHHHHH
Q 017176 18 DWTDNHYRTLARLISKHAWLYTEMLAAE-TIIYQQG---NLDRFL------AFSPEQHPIVLQIG-G--SNLDNLAKATE 84 (376)
Q Consensus 18 ~~td~~~r~~~~~~Gg~gl~~te~v~~~-~~~~~~~---~~~~~~------~~~~~~~p~~vQL~-g--~~~~~~~~aa~ 84 (376)
+.-|..+.+++.+.| ++.+.|+-.... .+.+.+. ..+.++ .......|+++-+= | .++++..+.+.
T Consensus 35 tayDa~sA~l~e~aG-~d~ilvGdSl~~~~lG~~dt~~vtldem~~h~~aV~r~~~~~~vvaD~pfgsY~s~~~a~~~a~ 113 (275)
T 3vav_A 35 TCYDASFAALLDRAN-VDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQPRALIVADLPFGTYGTPADAFASAV 113 (275)
T ss_dssp ECCSHHHHHHHHHTT-CSEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHTCCSSEEEEECCTTSCSSHHHHHHHHH
T ss_pred eCcCHHHHHHHHHcC-CCEEEECcHHHHHHcCCCCCCccCHHHHHHHHHHHHhcCCCCCEEEecCCCCCCCHHHHHHHHH
Confidence 556888888888876 888776632211 1111111 111111 11223356776652 3 47888888777
Q ss_pred HHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC---------CC----CCCccH
Q 017176 85 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI---------GV----DDHDSY 151 (376)
Q Consensus 85 ~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~---------g~----~~~~~~ 151 (376)
++.++|+++|.|--| ....+.++++++ .++|+.--+.+ |+ .+....
T Consensus 114 rl~kaGa~aVklEdg--------------------~~~~~~i~~l~~-~GIpv~gHlgltPq~~~~~gg~~vqgrt~~~a 172 (275)
T 3vav_A 114 KLMRAGAQMVKFEGG--------------------EWLAETVRFLVE-RAVPVCAHVGLTPQSVHAFGGFKVQGKTEAGA 172 (275)
T ss_dssp HHHHTTCSEEEEECC--------------------GGGHHHHHHHHH-TTCCEEEEEESCGGGHHHHC---CCCCSHHHH
T ss_pred HHHHcCCCEEEECCc--------------------hhHHHHHHHHHH-CCCCEEEecCCCceEEeccCCeEEEcCCHHHH
Confidence 777779999988532 123445555554 36676543221 11 111224
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecC
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 215 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGg 215 (376)
+++++. ++.++++|++.|.+.+-. -+..+++.++. ++|+|+-|-
T Consensus 173 ~~~i~r-A~a~~eAGA~~ivlE~vp------------------~~~a~~It~~l-~iP~igIGa 216 (275)
T 3vav_A 173 AQLLRD-ARAVEEAGAQLIVLEAVP------------------TLVAAEVTREL-SIPTIGIGA 216 (275)
T ss_dssp HHHHHH-HHHHHHHTCSEEEEESCC------------------HHHHHHHHHHC-SSCEEEESS
T ss_pred HHHHHH-HHHHHHcCCCEEEecCCC------------------HHHHHHHHHhC-CCCEEEEcc
Confidence 455554 456788999999987632 23455666665 899998763
|
| >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A* | Back alignment and structure |
|---|
Probab=92.87 E-value=1 Score=43.51 Aligned_cols=110 Identities=13% Similarity=0.093 Sum_probs=63.5
Q ss_pred ccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCcc-EEEEccCccccCCCCCCCCCC
Q 017176 111 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTR-HFIIHSRKALLNGISPAENRT 189 (376)
Q Consensus 111 yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd-~I~vh~r~~~~~g~~~~~~~~ 189 (376)
-|+..+.+.+++.. +. .++.||.+|.-.. .+++|+...+.. +.+.|.. .+.+|.++..|....
T Consensus 231 Igs~~~~n~~LL~~----~a-~~gkPVilk~G~~----~t~~e~~~Ave~-i~~~Gn~~i~L~~rG~s~yp~~~------ 294 (385)
T 3nvt_A 231 IGARNMQNFELLKA----AG-RVDKPILLKRGLS----ATIEEFIGAAEY-IMSQGNGKIILCERGIRTYEKAT------ 294 (385)
T ss_dssp ECGGGTTCHHHHHH----HH-TSSSCEEEECCTT----CCHHHHHHHHHH-HHTTTCCCEEEEECCBCCSCCSS------
T ss_pred ECcccccCHHHHHH----HH-ccCCcEEEecCCC----CCHHHHHHHHHH-HHHcCCCeEEEEECCCCCCCCCC------
Confidence 36667777654444 33 3689999996652 235555544443 3457774 555676664332110
Q ss_pred CCcccHHHHHHHHhhCCCCeEEEe----cCCCCH--HHHHHHHHcCcCeeEEch
Q 017176 190 IPPLKYEYYYALLRDFPDLTFTLN----GGINTV--DEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 190 ~~~~~~~~v~~~~~~~~~ipVi~n----GgI~s~--~da~~~l~~Gad~VmiGR 237 (376)
...+++..+..+++.+ ++||+.. +|-++. .-+..+...||||++|=+
T Consensus 295 ~~~ldl~~i~~lk~~~-~lpV~~D~th~~G~r~~v~~~a~AAvA~GA~gl~iE~ 347 (385)
T 3nvt_A 295 RNTLDISAVPILKKET-HLPVMVDVTHSTGRKDLLLPCAKAALAIEADGVMAEV 347 (385)
T ss_dssp SSBCCTTHHHHHHHHB-SSCEEEEHHHHHCCGGGHHHHHHHHHHTTCSEEEEEB
T ss_pred ccccCHHHHHHHHHhc-CCCEEEcCCCCCCccchHHHHHHHHHHhCCCEEEEEe
Confidence 1123466666666655 8999665 222222 335566778999999854
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=92.77 E-value=0.6 Score=43.55 Aligned_cols=100 Identities=10% Similarity=0.090 Sum_probs=60.6
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecC-CCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe
Q 017176 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNC-GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 141 (376)
Q Consensus 63 ~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~-gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 141 (376)
.+.|+. =+...|+ -.|+.++++|||.|=+.. ++-.. ....| ...-..+.+...++.|.+.+++||++-+
T Consensus 17 ~~~~i~-~~~a~D~----~sA~~~~~aG~~ai~vsg~~~a~~-lG~pD----~~~vt~~em~~~~~~I~~~~~~PviaD~ 86 (295)
T 1s2w_A 17 SKDLEF-IMEAHNG----LSARIVQEAGFKGIWGSGLSVSAQ-LGVRD----SNEASWTQVVEVLEFMSDASDVPILLDA 86 (295)
T ss_dssp SSSCEE-EEEECSH----HHHHHHHHHTCSCEEECCHHHHHT-C-------------CHHHHHHHHHHHHTCSSCEEEEC
T ss_pred CCCcEE-EecCCCH----HHHHHHHHcCCCEEEeChHHHHHh-CCCCC----CCCCCHHHHHHHHHHHHhcCCCCEEecC
Confidence 444443 2444554 367778888999997752 11110 01111 1122446677788888888899999999
Q ss_pred cCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCc
Q 017176 142 RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK 176 (376)
Q Consensus 142 R~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~ 176 (376)
-.|+.+. +.+.+.+.++ +++|+++|++-+..
T Consensus 87 d~Gyg~~---~~v~~~v~~l-~~aGaagv~iED~~ 117 (295)
T 1s2w_A 87 DTGYGNF---NNARRLVRKL-EDRGVAGACLEDKL 117 (295)
T ss_dssp CSSCSSH---HHHHHHHHHH-HHTTCCEEEEECBC
T ss_pred CCCCCCH---HHHHHHHHHH-HHcCCcEEEECCCC
Confidence 9986542 3444444444 47999999998764
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=92.76 E-value=0.94 Score=43.51 Aligned_cols=42 Identities=21% Similarity=0.299 Sum_probs=35.6
Q ss_pred ccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017176 193 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 193 ~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
..|+.+.++++.. ++||+. +++.+++++..+.+.|+|+|.++
T Consensus 212 ~~~~~i~~l~~~~-~~pv~v-K~~~~~e~a~~a~~~Gad~I~vs 253 (370)
T 1gox_A 212 LSWKDVAWLQTIT-SLPILV-KGVITAEDARLAVQHGAAGIIVS 253 (370)
T ss_dssp CCHHHHHHHHHHC-CSCEEE-ECCCSHHHHHHHHHTTCSEEEEC
T ss_pred chHHHHHHHHHHh-CCCEEE-EecCCHHHHHHHHHcCCCEEEEC
Confidence 4577788888775 899985 77899999999999999999994
|
| >1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A | Back alignment and structure |
|---|
Probab=92.55 E-value=0.85 Score=42.44 Aligned_cols=110 Identities=9% Similarity=0.068 Sum_probs=60.6
Q ss_pred ccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEE-EEccCccccCCCCCCCCCC
Q 017176 111 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHF-IIHSRKALLNGISPAENRT 189 (376)
Q Consensus 111 yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I-~vh~r~~~~~g~~~~~~~~ 189 (376)
-|+..+++.+++.++ . .++.||.+|.-...+ .+++...+ . .+...|...+ .+|.++ .+ ++..
T Consensus 114 IgA~~~~n~~Ll~~~----a-~~~kPV~lk~G~~~t-~~ei~~Av---~-~i~~~Gn~~i~L~~rg~-~~-~y~~----- 176 (292)
T 1o60_A 114 LPAFLARQTDLVEAM----A-KTGAVINVKKPQFLS-PSQMGNIV---E-KIEECGNDKIILCDRGT-NF-GYDN----- 176 (292)
T ss_dssp ECGGGTTCHHHHHHH----H-HTTCEEEEECCTTSC-GGGHHHHH---H-HHHHTTCCCEEEEECCE-EC-STTC-----
T ss_pred ECcccccCHHHHHHH----H-cCCCcEEEeCCCCCC-HHHHHHHH---H-HHHHcCCCeEEEEECCC-CC-CCCc-----
Confidence 377788888855554 3 358999999766322 22333332 2 3346787544 445444 22 1110
Q ss_pred CCcccHHHHHHHHhhCCCCeEEEe-----------cCCCCH------HHHHHHHHcCcCeeEEchH
Q 017176 190 IPPLKYEYYYALLRDFPDLTFTLN-----------GGINTV------DEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 190 ~~~~~~~~v~~~~~~~~~ipVi~n-----------GgI~s~------~da~~~l~~Gad~VmiGRa 238 (376)
...++..+..+++.++++||+.+ |+-... .-+..+.+.||||+||=+=
T Consensus 177 -~~~dl~~i~~lk~~~~~~pV~~D~sH~~q~p~~~~~~~~g~~~~~~~ia~aAva~Ga~Gl~IE~H 241 (292)
T 1o60_A 177 -LIVDMLGFSVMKKASKGSPVIFDVTHSLQCRDPFGAASSGRRAQVTELARSGLAVGIAGLFLEAH 241 (292)
T ss_dssp -EECCTTHHHHHHHHTTSCCEEEEHHHHCC------------CTTHHHHHHHHHHHCCSEEEEEEE
T ss_pred -cccCHHHHHHHHhhCCCCCEEEECCCcccccCccccCCCCChhHHHHHHHHHHHcCCCEEEEEec
Confidence 11345566666666557899982 222222 3344556689999998553
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=92.46 E-value=0.51 Score=41.90 Aligned_cols=129 Identities=12% Similarity=0.087 Sum_probs=73.3
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecC--CCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCC
Q 017176 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNC--GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG 144 (376)
Q Consensus 67 ~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~--gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g 144 (376)
++.-|.+.++..+.+.++.+.+.|+|.|++.. |.-.++ .+ +| .++++++++.++.|+.+-+-.
T Consensus 13 i~p~i~a~d~~~~~~~i~~~~~~G~d~i~l~~~dg~f~~~-~~---~~----------~~~i~~l~~~~~~~~~v~l~v- 77 (230)
T 1rpx_A 13 VSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPN-IT---IG----------PLVVDSLRPITDLPLDVHLMI- 77 (230)
T ss_dssp EEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSC-BC---CC----------HHHHHHHGGGCCSCEEEEEES-
T ss_pred EEEEeecCCHHHHHHHHHHHHHCCCCEEEEeeccCCcccc-cc---cC----------HHHHHHHHhccCCcEEEEEEe-
Confidence 56667788888899999999999999988853 211111 11 12 356677777666676655433
Q ss_pred CCCCccHHHHHHHHHHHhhcCCccEEEEccC--ccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHH
Q 017176 145 VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR--KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 222 (376)
Q Consensus 145 ~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r--~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da 222 (376)
.+ .++.+ ..+ .++|+|.|++|+. ... ...+.+..+.+ . ++.++..=.-.+..+.
T Consensus 78 -nd---~~~~v---~~~-~~~Gad~v~vh~~~~~~~--------------~~~~~~~~~~~-~-g~~ig~~~~p~t~~e~ 133 (230)
T 1rpx_A 78 -VE---PDQRV---PDF-IKAGADIVSVHCEQSSTI--------------HLHRTINQIKS-L-GAKAGVVLNPGTPLTA 133 (230)
T ss_dssp -SS---HHHHH---HHH-HHTTCSEEEEECSTTTCS--------------CHHHHHHHHHH-T-TSEEEEEECTTCCGGG
T ss_pred -cC---HHHHH---HHH-HHcCCCEEEEEecCccch--------------hHHHHHHHHHH-c-CCcEEEEeCCCCCHHH
Confidence 22 22222 222 3699999999975 310 01234444433 2 5555443222344333
Q ss_pred HHHHHcCcCeeE
Q 017176 223 NAALRKGAHHVM 234 (376)
Q Consensus 223 ~~~l~~Gad~Vm 234 (376)
.+.+..++|.|.
T Consensus 134 ~~~~~~~~d~vl 145 (230)
T 1rpx_A 134 IEYVLDAVDLVL 145 (230)
T ss_dssp GTTTTTTCSEEE
T ss_pred HHHHHhhCCEEE
Confidence 333346799884
|
| >1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A* | Back alignment and structure |
|---|
Probab=92.39 E-value=2.3 Score=38.82 Aligned_cols=97 Identities=8% Similarity=0.038 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 154 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~ 154 (376)
+++...+-|+...+.|+|.||||+|.+. ....+.+.+++..+++.+++|++|-.. .. ++
T Consensus 23 ~~~~a~~~a~~~v~~GAdiIDIg~g~~~-------------v~~~ee~~rvv~~i~~~~~~pisIDT~-------~~-~v 81 (262)
T 1f6y_A 23 DPAPVQEWARRQEEGGARALDLNVGPAV-------------QDKVSAMEWLVEVTQEVSNLTLCLDST-------NI-KA 81 (262)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEBCC-----------------CHHHHHHHHHHHHHTTCCSEEEEECS-------CH-HH
T ss_pred CHHHHHHHHHHHHHCCCcEEEECCCCCC-------------CChHHHHHHHHHHHHHhCCCeEEEeCC-------CH-HH
Confidence 4566666677777789999999985432 234677888888888877899988422 11 22
Q ss_pred HHHHHHHhhc-CCccEEE-EccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE
Q 017176 155 CDFIYKVSSL-SPTRHFI-IHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL 212 (376)
Q Consensus 155 ~~~i~~~~e~-~Gvd~I~-vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~ 212 (376)
++ ..++. .|++.|. |++... .++.+..++++. +.|+|+
T Consensus 82 ~~---aAl~a~~Ga~iINdvs~~~d----------------~~~~~~~~~a~~-~~~vvl 121 (262)
T 1f6y_A 82 IE---AGLKKCKNRAMINSTNAERE----------------KVEKLFPLAVEH-GAALIG 121 (262)
T ss_dssp HH---HHHHHCSSCEEEEEECSCHH----------------HHHHHHHHHHHT-TCEEEE
T ss_pred HH---HHHhhCCCCCEEEECCCCcc----------------cHHHHHHHHHHh-CCcEEE
Confidence 22 12222 2888876 555310 133344555555 788887
|
| >3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=92.37 E-value=0.45 Score=44.36 Aligned_cols=124 Identities=15% Similarity=0.099 Sum_probs=73.6
Q ss_pred HHHHHHCCCCEEE----ecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEE--e--cCC--CCCCccHH
Q 017176 83 TELANAYNYDEIN----LNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK--C--RIG--VDDHDSYN 152 (376)
Q Consensus 83 a~~~~~~G~d~Ie----iN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vK--i--R~g--~~~~~~~~ 152 (376)
++.+.+.|+|++- ||.|.|... ...+.+.+++++.. ..++|+.+- + |.| ..+..+.
T Consensus 134 Ve~AvrlGADaV~~l~~i~~Gs~~e~------------~~l~~la~vv~ea~-~~GlP~~~ep~~y~r~gg~v~~~~dp- 199 (307)
T 3fok_A 134 VSSMVDRGVDFAKTLVRINLSDAGTA------------PTLEATAHAVNEAA-AAQLPIMLEPFMSNWVNGKVVNDLST- 199 (307)
T ss_dssp HHHHHHHTCCEEEEEEEECTTCTTHH------------HHHHHHHHHHHHHH-HTTCCEEEEEEEEEEETTEEEECCSH-
T ss_pred HHHHHHCCCCEEEEEEEECCCChhHH------------HHHHHHHHHHHHHH-HcCCcEEEEeeccccCCCCcCCCCCH-
Confidence 3445567999976 455555321 12345555665543 357887764 2 212 1121223
Q ss_pred HHHHHHHHHhhcCCcc----EEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCC--CHHHH----
Q 017176 153 QLCDFIYKVSSLSPTR----HFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN--TVDEV---- 222 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd----~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~--s~~da---- 222 (376)
+.+...+++..+.|+| .|-+--- +.+.++.+.. .+||+..||=. +.+++
T Consensus 200 ~~Va~aaRiAaELGADs~~tivK~~y~--------------------e~f~~Vv~a~-~vPVViaGG~k~~~~~e~L~~v 258 (307)
T 3fok_A 200 DAVIQSVAIAAGLGNDSSYTWMKLPVV--------------------EEMERVMEST-TMPTLLLGGEGGNDPDATFASW 258 (307)
T ss_dssp HHHHHHHHHHHTCSSCCSSEEEEEECC--------------------TTHHHHGGGC-SSCEEEECCSCC--CHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcCCCEEEeCCc--------------------HHHHHHHHhC-CCCEEEeCCCCCCCHHHHHHHH
Confidence 3444456777789999 7765210 1134555655 69998888765 44544
Q ss_pred HHHHH-cCcCeeEEchHHhh
Q 017176 223 NAALR-KGAHHVMVGRAAYQ 241 (376)
Q Consensus 223 ~~~l~-~Gad~VmiGRa~l~ 241 (376)
+++++ .||.||.+||-++.
T Consensus 259 ~~A~~~aGa~Gv~vGRNIfQ 278 (307)
T 3fok_A 259 EHALTLPGVRGLTVGRTLLY 278 (307)
T ss_dssp HHHTTSTTEEEEEECTTTSS
T ss_pred HHHHHhCCCeEEeechhhcc
Confidence 44556 69999999999988
|
| >3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=92.36 E-value=2.5 Score=37.68 Aligned_cols=138 Identities=9% Similarity=0.102 Sum_probs=75.8
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccc---cccCCHHHHHHHHHHHhcccCccEEEE
Q 017176 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGV---SLMLDPKFVGEAMSVIAANTNVPVSVK 140 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~---~l~~~~~~~~eiv~~v~~~~~~pv~vK 140 (376)
+-++++|.+.-....+.++.+.+.++|||+||+....|... .|.+ ....+++.+.++-+.+++ .++.++.=
T Consensus 9 ~mklg~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~-~gl~i~~~ 82 (262)
T 3p6l_A 9 GWRLGMQSYSFHLFPLTEALDKTQELGLKYIEIYPGHKLGG-----KWGDKVFDFNLDAQTQKEIKELAAS-KGIKIVGT 82 (262)
T ss_dssp TEEEEEEGGGGTTSCHHHHHHHHHHTTCCEEEECTTEECCG-----GGTTCEESTTCCHHHHHHHHHHHHH-TTCEEEEE
T ss_pred CcEEEEEecccCCCCHHHHHHHHHHcCCCEEeecCCccccc-----ccccccccccCCHHHHHHHHHHHHH-cCCeEEEE
Confidence 34578887765444678888999999999999986543210 0111 111345555565555443 35544332
Q ss_pred ecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE---ec-CC
Q 017176 141 CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL---NG-GI 216 (376)
Q Consensus 141 iR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~---nG-gI 216 (376)
....-...+.+.+.++ ++...|+..|.+|.+.. .|..+.+..++. ++.+.. .+ .+
T Consensus 83 ~~~~~~~~~~~~~~i~----~A~~lGa~~v~~~~~~~----------------~~~~l~~~a~~~-gv~l~~En~~~~~~ 141 (262)
T 3p6l_A 83 GVYVAEKSSDWEKMFK----FAKAMDLEFITCEPALS----------------DWDLVEKLSKQY-NIKISVHNHPQPSD 141 (262)
T ss_dssp EEECCSSTTHHHHHHH----HHHHTTCSEEEECCCGG----------------GHHHHHHHHHHH-TCEEEEECCSSSSS
T ss_pred eccCCccHHHHHHHHH----HHHHcCCCEEEecCCHH----------------HHHHHHHHHHHh-CCEEEEEeCCCccc
Confidence 1111111233444433 34578999999996421 155555555543 444332 12 22
Q ss_pred -CCHHHHHHHHHc
Q 017176 217 -NTVDEVNAALRK 228 (376)
Q Consensus 217 -~s~~da~~~l~~ 228 (376)
.+++++.++++.
T Consensus 142 ~~~~~~~~~ll~~ 154 (262)
T 3p6l_A 142 YWKPENLLKAISG 154 (262)
T ss_dssp SSSHHHHHHHHTT
T ss_pred cCCHHHHHHHHHh
Confidence 478888888863
|
| >1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=92.34 E-value=1.8 Score=39.81 Aligned_cols=146 Identities=15% Similarity=0.109 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCC----ccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccH
Q 017176 76 LDNLAKATELANAYNYDEINLNCGCPS----PKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSY 151 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~gcP~----~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~ 151 (376)
.+.+....+.+++.|...+.==+.-.+ .....-..-|+..+.+..++.++-+ ++.||.+|.-.. .++
T Consensus 88 ~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~vd~~kIgs~~~~n~~ll~~~a~-----~~kPV~lk~G~~----~t~ 158 (276)
T 1vs1_A 88 LEGLKLLRRAGDEAGLPVVTEVLDPRHVETVSRYADMLQIGARNMQNFPLLREVGR-----SGKPVLLKRGFG----NTV 158 (276)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECCCGGGHHHHHHHCSEEEECGGGTTCHHHHHHHHH-----HTCCEEEECCTT----CCH
T ss_pred HHHHHHHHHHHHHcCCcEEEecCCHHHHHHHHHhCCeEEECcccccCHHHHHHHHc-----cCCeEEEcCCCC----CCH
Confidence 566666666677777655432111000 0001112247788888888777653 478999996653 134
Q ss_pred HHHHHHHHHHhhcCCc-cEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEe----cCCCC--HHHHHH
Q 017176 152 NQLCDFIYKVSSLSPT-RHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN----GGINT--VDEVNA 224 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gv-d~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~n----GgI~s--~~da~~ 224 (376)
.++...+..+ ...|. +.+.+|-++..+.+. ....+++..+..+++.+ ++||++. +|..+ .+-+..
T Consensus 159 ~ei~~Ave~i-~~~Gn~~i~L~~Rg~~~yp~y------~~~~vdl~~i~~lk~~~-~lpVi~dssH~~g~~~~~~~~~~a 230 (276)
T 1vs1_A 159 EELLAAAEYI-LLEGNWQVVLVERGIRTFEPS------TRFTLDVAAVAVLKEAT-HLPVIVDPSHPAGRRSLVPALAKA 230 (276)
T ss_dssp HHHHHHHHHH-HHTTCCCEEEEECCBCCSCCS------SSSBCBHHHHHHHHHHB-SSCEEECCHHHHCSGGGHHHHHHH
T ss_pred HHHHHHHHHH-HHcCCCeEEEEeCCcCCCCCc------CcchhCHHHHHHHHHHh-CCCEEEeCCCCCCccchHHHHHHH
Confidence 4444433333 35787 555567233222111 11234566677776655 7898763 23333 445556
Q ss_pred HHHcCcCeeEEchH
Q 017176 225 ALRKGAHHVMVGRA 238 (376)
Q Consensus 225 ~l~~Gad~VmiGRa 238 (376)
++..||||+||=+=
T Consensus 231 Ava~Ga~Gl~IE~H 244 (276)
T 1vs1_A 231 GLAAGADGLIVEVH 244 (276)
T ss_dssp HHHTTCSEEEEEBC
T ss_pred HHHcCCCEEEEEec
Confidence 67789999998653
|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
Probab=92.25 E-value=2.5 Score=38.36 Aligned_cols=127 Identities=9% Similarity=0.061 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHH
Q 017176 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLC 155 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~ 155 (376)
.+.+.+-++.++++|+|+|-+-+=.|. +. -|.+.+.+++++.. +.|+|.-.- +|...+..+.+
T Consensus 72 ~~~M~~Di~~~~~~GadGvV~G~Lt~d------g~------iD~~~~~~Li~~a~---~~~vTFHRA--fD~~~d~~~al 134 (256)
T 1twd_A 72 FAAILEDVRTVRELGFPGLVTGVLDVD------GN------VDMPRMEKIMAAAG---PLAVTFHRA--FDMCANPLYTL 134 (256)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCBCTT------SS------BCHHHHHHHHHHHT---TSEEEECGG--GGGCSCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeECCC------CC------cCHHHHHHHHHHhC---CCcEEEECc--hhccCCHHHHH
Confidence 345566677889999999998653222 21 46788888887764 467666322 44433443433
Q ss_pred HHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEE
Q 017176 156 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 235 (376)
Q Consensus 156 ~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vmi 235 (376)
+ .+. +.|++.|--||.... ..-..+.++++.+...+|-|+.-||| +.+.+.+++.+|++-+=.
T Consensus 135 e---~L~-~lG~~rILTSG~~~~------------a~~g~~~L~~Lv~~a~~i~Im~GgGv-~~~Ni~~l~~tGv~e~H~ 197 (256)
T 1twd_A 135 N---NLA-ELGIARVLTSGQKSD------------ALQGLSKIMELIAHRDAPIIMAGAGV-RAENLHHFLDAGVLEVHS 197 (256)
T ss_dssp H---HHH-HHTCCEEEECTTSSS------------TTTTHHHHHHHHTSSSCCEEEEESSC-CTTTHHHHHHHTCSEEEE
T ss_pred H---HHH-HcCCCEEECCCCCCC------------HHHHHHHHHHHHHhhCCcEEEecCCc-CHHHHHHHHHcCCCeEeE
Confidence 3 332 569999988876421 01126677777765436778888888 455566666788887775
Q ss_pred c
Q 017176 236 G 236 (376)
Q Consensus 236 G 236 (376)
+
T Consensus 198 S 198 (256)
T 1twd_A 198 S 198 (256)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.25 E-value=3.2 Score=38.34 Aligned_cols=139 Identities=16% Similarity=0.198 Sum_probs=85.6
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCC
Q 017176 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD 146 (376)
Q Consensus 67 ~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~ 146 (376)
+.+.++..+.+ .+..+++.|+|-|||+.+-.. | .+--.+ .+++.+++.+++||-+=+|+--.
T Consensus 40 ~~lEvc~~s~~----~a~~A~~gGAdRIELc~~l~~---------G-GlTPS~----g~i~~a~~~~~ipV~vMIRPRgG 101 (287)
T 3iwp_A 40 FLMEVCVDSVE----SAVNAERGGADRIELCSGLSE---------G-GTTPSM----GVLQVVKQSVQIPVFVMIRPRGG 101 (287)
T ss_dssp SEEEEEESSHH----HHHHHHHHTCSEEEECBCGGG---------T-CBCCCH----HHHHHHHTTCCSCEEEECCSSSS
T ss_pred ceEEEEeCCHH----HHHHHHHhCCCEEEECCCCCC---------C-CCCCCH----HHHHHHHHhcCCCeEEEEecCCC
Confidence 56777777765 445567789999999743111 1 122222 34556666778998888877322
Q ss_pred C----CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecC---CCCH
Q 017176 147 D----HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG---INTV 219 (376)
Q Consensus 147 ~----~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGg---I~s~ 219 (376)
+ ..+++.+.+.+. .+.++|+|.|+++.=+. .| .++.+...++++....++|...=- +.++
T Consensus 102 dF~Ys~~E~~~M~~dI~-~~~~~GAdGvVfG~L~~--dg----------~iD~~~~~~Li~~a~~l~vTFHRAFD~~~d~ 168 (287)
T 3iwp_A 102 DFLYSDREIEVMKADIR-LAKLYGADGLVFGALTE--DG----------HIDKELCMSLMAICRPLPVTFHRAFDMVHDP 168 (287)
T ss_dssp CSCCCHHHHHHHHHHHH-HHHHTTCSEEEECCBCT--TS----------CBCHHHHHHHHHHHTTSCEEECGGGGGCSCH
T ss_pred CcccCHHHHHHHHHHHH-HHHHcCCCEEEEeeeCC--CC----------CcCHHHHHHHHHHcCCCcEEEECchhccCCH
Confidence 1 134555555544 44579999999886332 11 123566666666544688887755 3457
Q ss_pred HHHHHHHH-cCcCeeEEc
Q 017176 220 DEVNAALR-KGAHHVMVG 236 (376)
Q Consensus 220 ~da~~~l~-~Gad~VmiG 236 (376)
..+.+.+. .|+|.|.-.
T Consensus 169 ~~Ale~Li~lGvdrILTS 186 (287)
T 3iwp_A 169 MAALETLLTLGFERVLTS 186 (287)
T ss_dssp HHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEECC
Confidence 76666665 699988773
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=92.24 E-value=0.53 Score=40.87 Aligned_cols=82 Identities=12% Similarity=-0.016 Sum_probs=53.1
Q ss_pred ccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEec
Q 017176 135 VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 214 (376)
Q Consensus 135 ~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nG 214 (376)
.|+.+-+|. .+.++..+. ++.+.+.|++.|.+|.++.. ..+.+.++++.++.-.+|+.|
T Consensus 10 ~~~i~~~~~-----~~~~~~~~~-~~~~~~~G~~~iev~~~~~~---------------~~~~i~~ir~~~~~~~~ig~~ 68 (205)
T 1wa3_A 10 HKIVAVLRA-----NSVEEAKEK-ALAVFEGGVHLIEITFTVPD---------------ADTVIKELSFLKEKGAIIGAG 68 (205)
T ss_dssp HCEEEEECC-----SSHHHHHHH-HHHHHHTTCCEEEEETTSTT---------------HHHHHHHTHHHHHTTCEEEEE
T ss_pred CCEEEEEec-----CCHHHHHHH-HHHHHHCCCCEEEEeCCChh---------------HHHHHHHHHHHCCCCcEEEec
Confidence 466665664 123343333 44556799999999976420 033455555543322357778
Q ss_pred CCCCHHHHHHHHHcCcCeeEEchH
Q 017176 215 GINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 215 gI~s~~da~~~l~~Gad~VmiGRa 238 (376)
-+.+++++.++.+.|||+| ++-+
T Consensus 69 ~v~~~~~~~~a~~~Gad~i-v~~~ 91 (205)
T 1wa3_A 69 TVTSVEQCRKAVESGAEFI-VSPH 91 (205)
T ss_dssp SCCSHHHHHHHHHHTCSEE-ECSS
T ss_pred ccCCHHHHHHHHHcCCCEE-EcCC
Confidence 8899999999999999999 7654
|
| >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=92.19 E-value=1.2 Score=40.64 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=62.1
Q ss_pred cccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEE-EEccCccccCCCCCCCCCCC
Q 017176 112 GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHF-IIHSRKALLNGISPAENRTI 190 (376)
Q Consensus 112 G~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I-~vh~r~~~~~g~~~~~~~~~ 190 (376)
|+..+.+..++.++.+ ++.||.+|.... .+++++...+.. +...|...+ .+|-+.....++ ..
T Consensus 113 ga~~~~n~~ll~~~a~-----~~kPV~lk~G~~----~t~~e~~~Av~~-i~~~Gn~~i~L~~RG~~~~~~y------~~ 176 (262)
T 1zco_A 113 GARNSQNFELLKEVGK-----VENPVLLKRGMG----NTIQELLYSAEY-IMAQGNENVILCERGIRTFETA------TR 176 (262)
T ss_dssp CGGGTTCHHHHHHHTT-----SSSCEEEECCTT----CCHHHHHHHHHH-HHTTTCCCEEEEECCBCCSCCS------SS
T ss_pred CcccccCHHHHHHHHh-----cCCcEEEecCCC----CCHHHHHHHHHH-HHHCCCCeEEEEECCCCCCCCc------Ch
Confidence 6667777776666433 689999986552 135555554443 446787444 446431111111 11
Q ss_pred CcccHHHHHHHHhhCCCCeEEEe----cCCCC--HHHHHHHHHcCcCeeEEchH
Q 017176 191 PPLKYEYYYALLRDFPDLTFTLN----GGINT--VDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 191 ~~~~~~~v~~~~~~~~~ipVi~n----GgI~s--~~da~~~l~~Gad~VmiGRa 238 (376)
..+++..+..+++.+ ++|||+. +|..+ +.-+..+...||||+||=+=
T Consensus 177 ~~v~L~ai~~lk~~~-~~pVi~d~sH~~g~~~~v~~~~~aAva~Ga~Gl~iE~H 229 (262)
T 1zco_A 177 FTLDISAVPVVKELS-HLPIIVDPSHPAGRRSLVIPLAKAAYAIGADGIMVEVH 229 (262)
T ss_dssp SBCCTTHHHHHHHHB-SSCEEECSSTTTCSGGGHHHHHHHHHHTTCSEEEEEBC
T ss_pred hhcCHHHHHHHHhhh-CCCEEEEcCCCCCccchHHHHHHHHHHcCCCEEEEEec
Confidence 223455666666654 7898764 23322 13345566689999998654
|
| >3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=92.16 E-value=0.43 Score=44.47 Aligned_cols=91 Identities=11% Similarity=0.140 Sum_probs=57.1
Q ss_pred HHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHH
Q 017176 124 EAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL 202 (376)
Q Consensus 124 eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~ 202 (376)
+-++.+|+.. ..|+.|-+ ++++++.+. + ++|+|.|-+..-+ .+.+++.+
T Consensus 196 ~Av~~ar~~~p~~kIeVEv-------~tl~e~~eA----l-~aGaDiImLDn~s------------------~~~l~~av 245 (300)
T 3l0g_A 196 LAIQRLRKNLKNEYIAIEC-------DNISQVEES----L-SNNVDMILLDNMS------------------ISEIKKAV 245 (300)
T ss_dssp HHHHHHHHHSSSCCEEEEE-------SSHHHHHHH----H-HTTCSEEEEESCC------------------HHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEEE-------CCHHHHHHH----H-HcCCCEEEECCCC------------------HHHHHHHH
Confidence 4455555443 34555532 345554432 2 4899999886532 22333333
Q ss_pred hhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 203 RDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 203 ~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
+.. .++.+.++||| +.+.+.+..++|+|.+.+|.--..-|++
T Consensus 246 ~~~~~~v~leaSGGI-t~~~i~~~A~tGVD~IsvGalthsa~~l 288 (300)
T 3l0g_A 246 DIVNGKSVLEVSGCV-NIRNVRNIALTGVDYISIGCITNSFQNK 288 (300)
T ss_dssp HHHTTSSEEEEESSC-CTTTHHHHHTTTCSEEECGGGTSSCCCC
T ss_pred HhhcCceEEEEECCC-CHHHHHHHHHcCCCEEEeCccccCCCcc
Confidence 221 37899999999 8889988888999999999554444554
|
| >2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=92.13 E-value=0.58 Score=42.68 Aligned_cols=101 Identities=11% Similarity=0.060 Sum_probs=63.4
Q ss_pred cCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecC-CCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEE
Q 017176 60 FSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNC-GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVS 138 (376)
Q Consensus 60 ~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~-gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~ 138 (376)
.+..+.|++ =+...|. -.|+.++++|||.|=+.. +.-. .. | |-....-..+.+...+++|.+.++.||+
T Consensus 15 l~~~~~~i~-~~~ayD~----~sA~~~~~aG~dai~vg~~s~a~--~~--G-~pD~~~vt~~em~~~~~~I~r~~~~pvi 84 (255)
T 2qiw_A 15 DHESGKLLV-LPTVWDT----WSAGLVEEAGFSGLTIGSHPVAD--AT--G-SSDGENMNFADYMAVVKKITSAVSIPVS 84 (255)
T ss_dssp HHHTCCCEE-CCEESSH----HHHHHHHHTTCSCEEECHHHHHH--HT--T-CCTTTCSCHHHHHHHHHHHHHHCSSCEE
T ss_pred HHhCCCcEE-EecCcCH----HHHHHHHHcCCCEEEEChHHHHH--hC--C-CCCCCCcCHHHHHHHHHHHHhcCCCCEE
Confidence 333455543 2334453 367788899999997752 1111 11 1 1222234567788888888888889999
Q ss_pred EEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCc
Q 017176 139 VKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK 176 (376)
Q Consensus 139 vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~ 176 (376)
+-+-.|+.+.. .+.+.++. ++|++.|.+-+..
T Consensus 85 aD~~~Gyg~~~-----~~~~~~l~-~aGa~gv~iEd~~ 116 (255)
T 2qiw_A 85 VDVESGYGLSP-----ADLIAQIL-EAGAVGINVEDVV 116 (255)
T ss_dssp EECTTCTTCCH-----HHHHHHHH-HTTCCEEEECSEE
T ss_pred eccCCCcCcHH-----HHHHHHHH-HcCCcEEEECCCC
Confidence 99999975432 22333444 5999999998764
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=92.12 E-value=0.35 Score=46.31 Aligned_cols=59 Identities=20% Similarity=0.320 Sum_probs=45.0
Q ss_pred CCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017176 165 SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 165 ~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
.|++.+.+|... |. +...++.+.++++..+++||+ .|+|.|.+++..+.+.|||+|.++
T Consensus 131 ~g~~~i~i~~~~----g~--------~~~~~~~i~~lr~~~~~~~vi-~g~v~t~e~A~~a~~aGaD~I~v~ 189 (351)
T 2c6q_A 131 PQVKYICLDVAN----GY--------SEHFVEFVKDVRKRFPQHTIM-AGNVVTGEMVEELILSGADIIKVG 189 (351)
T ss_dssp TTCCEEEEECSC----TT--------BHHHHHHHHHHHHHCTTSEEE-EEEECSHHHHHHHHHTTCSEEEEC
T ss_pred CCCCEEEEEecC----CC--------cHHHHHHHHHHHHhcCCCeEE-EEeCCCHHHHHHHHHhCCCEEEEC
Confidence 389999887521 11 112367788888877689988 478999999999999999999885
|
| >3va8_A Probable dehydratase; enolase, magnesium binding site, lyase; 2.00A {Gibberella zeae} | Back alignment and structure |
|---|
Probab=92.10 E-value=1.9 Score=42.49 Aligned_cols=121 Identities=12% Similarity=0.097 Sum_probs=82.3
Q ss_pred CCHHHHHHHHHHHHH-CCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccH
Q 017176 74 SNLDNLAKATELANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSY 151 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~-~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~ 151 (376)
.+|+++++.|+.+.+ .||..+-+..|.. +++.-.+.+++||+.+ +.++.|-..-+|+ .
T Consensus 190 ~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~----------------~~~~Di~~v~avRea~~~~~L~vDaN~~w~----~ 249 (445)
T 3va8_A 190 LDPEGVVKQAKKIIDEYGFKAIKLKGGVF----------------PPADEVAAIKALHKAFPGVPLRLDPNAAWT----V 249 (445)
T ss_dssp CSHHHHHHHHHHHHHHHCCSCEEEECSSS----------------CHHHHHHHHHHHHHHSTTCCEEEECTTCBC----H
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEccCCC----------------CHHHHHHHHHHHHHhCCCCcEeeeCCCCCC----H
Confidence 578999988887765 5999998864321 3444566788888776 4556665555554 3
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCc
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGA 230 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Ga 230 (376)
++.+++ .+.+++. +.+|. .+ . .+++..+++.+.. ++||.+.-.+.+..++.++++ ..+
T Consensus 250 ~~Ai~~-~~~L~~~-l~~iE----eP------------~--~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~a~ 308 (445)
T 3va8_A 250 ETSKWV-AKELEGI-VEYLE----DP------------A--GEIEGMAAVAKEA-SMPLATNMAVVAFDHLPPSILQDAV 308 (445)
T ss_dssp HHHHHH-HHHTTTT-CSEEE----SC------------B--SHHHHHHHHHTTC-SSCEEESSSCCSGGGHHHHHHTTCC
T ss_pred HHHHHH-HHHHhhh-cCeEe----ec------------C--cCHHHHHHHHHcC-CCCEEeCCccCCHHHHHHHHHcCCC
Confidence 455554 3445666 66654 00 1 1366677777654 899999889999999999998 558
Q ss_pred CeeEE
Q 017176 231 HHVMV 235 (376)
Q Consensus 231 d~Vmi 235 (376)
|.|++
T Consensus 309 div~~ 313 (445)
T 3va8_A 309 QVILS 313 (445)
T ss_dssp SEEEE
T ss_pred CEEEe
Confidence 88876
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=92.05 E-value=0.63 Score=41.37 Aligned_cols=132 Identities=13% Similarity=0.051 Sum_probs=86.3
Q ss_pred CCCCCEEEEecCCC----HH--HHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCc
Q 017176 62 PEQHPIVLQIGGSN----LD--NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135 (376)
Q Consensus 62 ~~~~p~~vQL~g~~----~~--~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~ 135 (376)
+.+-++++|..... ++ .+.+.++.+.++|+++|.++ + + +.++.+++.+++
T Consensus 15 ~~~~~~~~~~~~~~p~~~~~~~~~~~~a~~~~~~G~~~i~~~--------------~------~----~~i~~i~~~~~~ 70 (234)
T 1yxy_A 15 KGGIIVSCQALPGEPLYSETGGIMPLMAKAAQEAGAVGIRAN--------------S------V----RDIKEIQAITDL 70 (234)
T ss_dssp TTSCEEECCCCTTSTTCCTTCCSHHHHHHHHHHHTCSEEEEE--------------S------H----HHHHHHHTTCCS
T ss_pred hCCEEEEeeCCCCCCCcCCccchHHHHHHHHHHCCCcEeecC--------------C------H----HHHHHHHHhCCC
Confidence 45666778877654 67 78888898999999999875 1 2 347778888889
Q ss_pred cEEEEecCCCCCC-----ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeE
Q 017176 136 PVSVKCRIGVDDH-----DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF 210 (376)
Q Consensus 136 pv~vKiR~g~~~~-----~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipV 210 (376)
|+.--++.++++. ...++ + . .+.++|+|.|++|....... ++ ....+.+..+++.+++++|
T Consensus 71 p~i~~~~~~~~~~~~~i~~~~~~-i---~-~~~~~Gad~V~l~~~~~~~~-----~~----~~~~~~i~~i~~~~~~~~v 136 (234)
T 1yxy_A 71 PIIGIIKKDYPPQEPFITATMTE-V---D-QLAALNIAVIAMDCTKRDRH-----DG----LDIASFIRQVKEKYPNQLL 136 (234)
T ss_dssp CEEEECBCCCTTSCCCBSCSHHH-H---H-HHHTTTCSEEEEECCSSCCT-----TC----CCHHHHHHHHHHHCTTCEE
T ss_pred CEEeeEcCCCCccccccCChHHH-H---H-HHHHcCCCEEEEcccccCCC-----CC----ccHHHHHHHHHHhCCCCeE
Confidence 9832233332221 12222 2 2 23469999999997542100 00 0114567777766667776
Q ss_pred EEecCCCCHHHHHHHHHcCcCee
Q 017176 211 TLNGGINTVDEVNAALRKGAHHV 233 (376)
Q Consensus 211 i~nGgI~s~~da~~~l~~Gad~V 233 (376)
+. ++.+.+++..+.+.|+|.|
T Consensus 137 ~~--~~~t~~ea~~a~~~Gad~i 157 (234)
T 1yxy_A 137 MA--DISTFDEGLVAHQAGIDFV 157 (234)
T ss_dssp EE--ECSSHHHHHHHHHTTCSEE
T ss_pred EE--eCCCHHHHHHHHHcCCCEE
Confidence 65 6889999999999999998
|
| >1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=91.81 E-value=0.49 Score=42.37 Aligned_cols=131 Identities=17% Similarity=0.125 Sum_probs=75.6
Q ss_pred HHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHh
Q 017176 83 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVS 162 (376)
Q Consensus 83 a~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~ 162 (376)
+..++++|+|+|-|+.+. |+-.+| .+.+.++...+ .+.-+.|=+ .+ ..+.. .+
T Consensus 78 ~~~l~~~Ga~~Vllghse------RR~~~~--------e~~~k~~~A~~-~GL~~ivcV----ge---~~e~~-----~~ 130 (226)
T 1w0m_A 78 LENIKEAGGSGVILNHSE------APLKLN--------DLARLVAKAKS-LGLDVVVCA----PD---PRTSL-----AA 130 (226)
T ss_dssp HHHHHHHTCCEEEECCTT------SCCBHH--------HHHHHHHHHHH-TTCEEEEEE----SS---HHHHH-----HH
T ss_pred HHHHHHcCCCEEEEeeee------ccCCHH--------HHHHHHHHHHH-CCCEEEEEe----CC---HHHHH-----HH
Confidence 456788899999997532 122223 24444444333 233332311 11 12221 12
Q ss_pred hcCCccEEEEccCccccCCCC--CCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHH
Q 017176 163 SLSPTRHFIIHSRKALLNGIS--PAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~--~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~ 239 (376)
...+.+.|-+-++...=.|.+ .. .+-..+.+.++++.. .+++|+.-|+|.+.+++..+...|+||+.||+++
T Consensus 131 ~~~~~~iIayep~waiGtG~~v~t~-----~~d~~~~~~~~ir~~~~~~~ilyggsV~~~n~~~~~~~~giDG~LVG~a~ 205 (226)
T 1w0m_A 131 AALGPHAVAVEPPELIGTGRAVSRY-----KPEAIVETVGLVSRHFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAA 205 (226)
T ss_dssp HHTCCSEEEECCGGGTTTSCCHHHH-----CHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred hcCCCCEEEEcChhhhccCCCCCCC-----ChhHHHHHHHHHHhccCCCEEEEeCCCCcHHHHHHHHhCCCCEEEECHHH
Confidence 345777788877754212200 00 010022223333433 3689999999999999999988999999999999
Q ss_pred hhCCch
Q 017176 240 YQNPWY 245 (376)
Q Consensus 240 l~~P~l 245 (376)
+.-+++
T Consensus 206 l~a~~~ 211 (226)
T 1w0m_A 206 VKAKDP 211 (226)
T ss_dssp HTCSSH
T ss_pred HCCcCH
Confidence 988773
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.77 E-value=3.3 Score=38.27 Aligned_cols=126 Identities=12% Similarity=0.040 Sum_probs=76.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 152 (376)
|.+.+.+-++.+.+.|.|+|-++.. +|+ +..| ..+.-.++++.+.+.+ .+||.+-+.. .+..
T Consensus 19 D~~~l~~lv~~li~~Gv~gl~~~Gt--------tGE-~~~L--s~~Er~~v~~~~~~~~~gr~pviaGvg~-----~~t~ 82 (292)
T 2vc6_A 19 DEVALHDLVEWQIEEGSFGLVPCGT--------TGE-SPTL--SKSEHEQVVEITIKTANGRVPVIAGAGS-----NSTA 82 (292)
T ss_dssp CHHHHHHHHHHHHHTTCSEEETTSG--------GGT-GGGS--CHHHHHHHHHHHHHHHTTSSCBEEECCC-----SSHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc--------ccC-hhhC--CHHHHHHHHHHHHHHhCCCCcEEEecCC-----ccHH
Confidence 6788888999888999999977531 344 3333 4444555666555543 4788775432 2345
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE------ecCCCCHHHHHHHH
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAAL 226 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~------nGgI~s~~da~~~l 226 (376)
+.++. ++.+++.|+|++.+..-. +...+ ...-++++.++.+.. ++||+. .|--.+++.+.++.
T Consensus 83 ~ai~l-a~~A~~~Gadavlv~~P~--y~~~s-------~~~l~~~f~~ia~a~-~lPiilYn~P~~tg~~l~~~~~~~La 151 (292)
T 2vc6_A 83 EAIAF-VRHAQNAGADGVLIVSPY--YNKPT-------QEGIYQHFKAIDAAS-TIPIIVYNIPGRSAIEIHVETLARIF 151 (292)
T ss_dssp HHHHH-HHHHHHTTCSEEEEECCC--SSCCC-------HHHHHHHHHHHHHHC-SSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred HHHHH-HHHHHHcCCCEEEEcCCC--CCCCC-------HHHHHHHHHHHHHhC-CCCEEEEeCccccCcCCCHHHHHHHH
Confidence 55554 455678999999876421 11110 011145566676664 799876 35446788777765
Q ss_pred H
Q 017176 227 R 227 (376)
Q Consensus 227 ~ 227 (376)
+
T Consensus 152 ~ 152 (292)
T 2vc6_A 152 E 152 (292)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=91.76 E-value=0.89 Score=42.91 Aligned_cols=92 Identities=13% Similarity=0.126 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHH
Q 017176 118 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 197 (376)
Q Consensus 118 ~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~ 197 (376)
.++.+.+.++.+++.++.|+.|.+-.. + .++.+.++ ++.+.|+|.|.+|++.. .+.
T Consensus 47 ~~~~~~~~i~~i~~~~~~p~gvnl~~~-~--~~~~~~~~----~a~~~g~d~V~~~~g~p-----------------~~~ 102 (332)
T 2z6i_A 47 PKEVVKANIDKIKSLTDKPFGVNIMLL-S--PFVEDIVD----LVIEEGVKVVTTGAGNP-----------------SKY 102 (332)
T ss_dssp CHHHHHHHHHHHHHHCCSCEEEEECTT-S--TTHHHHHH----HHHHTTCSEEEECSSCG-----------------GGT
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEecCC-C--CCHHHHHH----HHHHCCCCEEEECCCCh-----------------HHH
Confidence 567788888888877778888766542 1 22444333 33468999999998531 122
Q ss_pred HHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEE-ch
Q 017176 198 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV-GR 237 (376)
Q Consensus 198 v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vmi-GR 237 (376)
+..+.+ . ++||+. .|.+.+++..+.+.|+|+|.+ |+
T Consensus 103 i~~l~~-~-g~~v~~--~v~~~~~a~~~~~~GaD~i~v~g~ 139 (332)
T 2z6i_A 103 MERFHE-A-GIIVIP--VVPSVALAKRMEKIGADAVIAEGM 139 (332)
T ss_dssp HHHHHH-T-TCEEEE--EESSHHHHHHHHHTTCSCEEEECT
T ss_pred HHHHHH-c-CCeEEE--EeCCHHHHHHHHHcCCCEEEEECC
Confidence 334433 3 788884 478999998888899999998 54
|
| >3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=91.60 E-value=4.9 Score=38.23 Aligned_cols=99 Identities=11% Similarity=0.125 Sum_probs=58.9
Q ss_pred cccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCC
Q 017176 112 GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191 (376)
Q Consensus 112 G~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~ 191 (376)
||.-+++..++.++- .+++||.+|.-+. +++|+...+ ..+.+.|.+.+.+|+-+. | ..+ ..
T Consensus 118 ~S~~~~N~pLL~~va-----~~gKPviLstGms-----tl~Ei~~Av-e~i~~~g~~viLlhC~s~-Y--Pt~-----~~ 178 (350)
T 3g8r_A 118 ASCSFTDWPLLERIA-----RSDKPVVASTAGA-----RREDIDKVV-SFMLHRGKDLTIMHCVAE-Y--PTP-----DD 178 (350)
T ss_dssp CSSSTTCHHHHHHHH-----TSCSCEEEECTTC-----CHHHHHHHH-HHHHTTTCCEEEEECCCC-S--SCC-----GG
T ss_pred CcccccCHHHHHHHH-----hhCCcEEEECCCC-----CHHHHHHHH-HHHHHcCCCEEEEecCCC-C--CCC-----cc
Confidence 444456777666543 2589999986652 344544333 233456878777787532 1 111 12
Q ss_pred cccHHHHHHHHhhCCCCeEEEe----cCCCCHHHHHHHHHcCcC
Q 017176 192 PLKYEYYYALLRDFPDLTFTLN----GGINTVDEVNAALRKGAH 231 (376)
Q Consensus 192 ~~~~~~v~~~~~~~~~ipVi~n----GgI~s~~da~~~l~~Gad 231 (376)
.+++..+..+++.++++||..+ |+.. .-+..++..||+
T Consensus 179 ~~nL~aI~~Lk~~fp~lpVG~SdHt~g~~~--~~~~AAvAlGA~ 220 (350)
T 3g8r_A 179 HLHLARIKTLRQQYAGVRIGYSTHEDPDLM--EPIMLAVAQGAT 220 (350)
T ss_dssp GCCTTHHHHHHHHCTTSEEEEEECCCSSCC--HHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHHCCCCCEEcCCCCCCCcc--HHHHHHHHcCCC
Confidence 3456677788888878999766 3321 233466678886
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=91.59 E-value=0.26 Score=47.96 Aligned_cols=61 Identities=21% Similarity=0.296 Sum_probs=46.1
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017176 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
.++|+|.|.++... |. +...++.+..+++.++++||++ |++.+.+++..+.+.|+|+|.+|
T Consensus 162 ~~~G~d~i~i~~~~----g~--------~~~~~e~i~~ir~~~~~~pviv-~~v~~~~~a~~a~~~Gad~I~vg 222 (404)
T 1eep_A 162 VKAHVDILVIDSAH----GH--------STRIIELIKKIKTKYPNLDLIA-GNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_dssp HHTTCSEEEECCSC----CS--------SHHHHHHHHHHHHHCTTCEEEE-EEECSHHHHHHHHTTTCSEEEEC
T ss_pred HHCCCCEEEEeCCC----CC--------hHHHHHHHHHHHHHCCCCeEEE-cCCCcHHHHHHHHhcCCCEEEEC
Confidence 46899999986321 11 1223667777777766899987 77899999999999999999994
|
| >3vdg_A Probable glucarate dehydratase; enolase, magnesium binding site, lyase; 1.90A {Mycobacterium smegmatis str} PDB: 3vfc_A* | Back alignment and structure |
|---|
Probab=91.56 E-value=2.6 Score=41.46 Aligned_cols=121 Identities=12% Similarity=0.126 Sum_probs=82.8
Q ss_pred CCHHHHHHHHHHHHH-CCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccH
Q 017176 74 SNLDNLAKATELANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSY 151 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~-~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~ 151 (376)
.+|+++++.|+.+.+ .||..+-+..|. .+++.-.+.+++||+.+ ++++.|-..-+|+ .
T Consensus 192 ~~~e~~~~~a~~~~~~~Gf~~~KlKvG~----------------~~~~~Di~~v~avRea~~d~~L~vDaN~~w~----~ 251 (445)
T 3vdg_A 192 LDPDGIVAQARRMIDEYGFSAIKLKGGV----------------FAPEEEMAAVEALRAAFPDHPLRLDPNAAWT----P 251 (445)
T ss_dssp CSHHHHHHHHHHHHHHHCCSSEEEECSS----------------SCHHHHHHHHHHHHHHCTTSCEEEECTTCSC----H
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCC----------------CCHHHHHHHHHHHHHhCCCCcEEEECCCCCC----H
Confidence 578999988887765 599999886432 13444566778888776 4566666555564 3
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCc
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGA 230 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Ga 230 (376)
++.+++ .+.+++. +.+|. .+ .+ +++..+++.+.. ++||.+.-.+.+..++.++++ ..+
T Consensus 252 ~~Ai~~-~~~L~~~-l~~iE----eP------------~~--~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~l~~~a~ 310 (445)
T 3vdg_A 252 QTSVKV-AAGLEGV-LEYLE----DP------------TP--GLDGMAEVAAQA-PMPLATNMCVVAFDQLPAAVAKNSV 310 (445)
T ss_dssp HHHHHH-HHHTTTT-CSEEE----CC------------SS--SHHHHHHHHHHC-SSCEEESSSCCSGGGHHHHHHHTCC
T ss_pred HHHHHH-HHHHhhH-HHeee----CC------------CC--CHHHHHHHHhcC-CCCEEcCCcCCCHHHHHHHHHcCCC
Confidence 455554 3455666 66654 00 11 366677777764 899999888999999999998 568
Q ss_pred CeeEE
Q 017176 231 HHVMV 235 (376)
Q Consensus 231 d~Vmi 235 (376)
|.|++
T Consensus 311 div~~ 315 (445)
T 3vdg_A 311 QVVLS 315 (445)
T ss_dssp SEEEE
T ss_pred CEEee
Confidence 88876
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=91.56 E-value=1.5 Score=41.97 Aligned_cols=143 Identities=8% Similarity=-0.016 Sum_probs=73.0
Q ss_pred HHHHHHHHHCCCCEEEecC-------CCCCccccCCCCccccccCC-------HHHHHHHHHHHhcccCccEEEEecCCC
Q 017176 80 AKATELANAYNYDEINLNC-------GCPSPKVAGHGCFGVSLMLD-------PKFVGEAMSVIAANTNVPVSVKCRIGV 145 (376)
Q Consensus 80 ~~aa~~~~~~G~d~IeiN~-------gcP~~~v~r~g~yG~~l~~~-------~~~~~eiv~~v~~~~~~pv~vKiR~g~ 145 (376)
.+..+.+.+.||-+|++-. |.|.+...+.. .+++|+ .+...+-++..++..+.|+.+-+- |
T Consensus 61 ~e~~~~l~~~G~G~v~~ktvt~~pq~GNp~PR~~~~~---~~~iN~~G~~n~G~~~~~~~l~~~~~~~~~pvivsI~-G- 135 (354)
T 4ef8_A 61 TEELVAMTESASGSLVSKSCTPALREGNPTPRYQALP---LGSINSMGLPNNGFDFYLAYAAEQHDYGKKPLFLSMS-G- 135 (354)
T ss_dssp HHHHHHHHHSSCSCEEEEEECSSCBCCSCSCCEEEET---TEEEECCCCCBCCHHHHHHHHHHTCCTTTCCEEEEEC-C-
T ss_pred HHHHHHHHHcCCCeEEeCcccCcccCCCCCCcEEecc---hhhhccCCCCCcCHHHHHHHHHHHhhcCCCcEEEEec-c-
Confidence 3456677788999999853 44444333322 222332 345555555544445788887653 2
Q ss_pred CCCccHHHHHHHHHHHhh---cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEe--cCCCCHH
Q 017176 146 DDHDSYNQLCDFIYKVSS---LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN--GGINTVD 220 (376)
Q Consensus 146 ~~~~~~~~~~~~i~~~~e---~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~n--GgI~s~~ 220 (376)
. +.++.++.+. .++ +.|+|+|.|.-..+...|.. ..-.-+....+.+..+++. .++||+.= =++ +.+
T Consensus 136 ~---~~~d~~~~a~-~l~~~~~~g~d~ielNisCPn~~gg~--~l~~~~e~~~~il~av~~~-~~~PV~vKi~p~~-d~~ 207 (354)
T 4ef8_A 136 L---SMRENVEMCK-RLAAVATEKGVILELNLSCPNVPGKP--QVAYDFDAMRQCLTAVSEV-YPHSFGVKMPPYF-DFA 207 (354)
T ss_dssp S---SHHHHHHHHH-HHHHHHHHHCCEEEEECSSCCSTTSC--CGGGSHHHHHHHHHHHHHH-CCSCEEEEECCCC-SHH
T ss_pred C---CHHHHHHHHH-HHhhhhhcCCCEEEEeCCCCCCCCch--hhccCHHHHHHHHHHHHHh-hCCCeEEEecCCC-CHH
Confidence 2 2334444333 233 57899999975533222211 1000011123455555554 47898753 233 444
Q ss_pred HHH---HHHH-cC-cCeeEE
Q 017176 221 EVN---AALR-KG-AHHVMV 235 (376)
Q Consensus 221 da~---~~l~-~G-ad~Vmi 235 (376)
++. +++. .| +|+|.+
T Consensus 208 ~~~~~a~~~~~~Gg~d~I~~ 227 (354)
T 4ef8_A 208 HFDAAAEILNEFPKVQFITC 227 (354)
T ss_dssp HHHHHHHHHHTCTTEEEEEE
T ss_pred HHHHHHHHHHhCCCccEEEE
Confidence 443 3333 66 999975
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=91.55 E-value=8.3 Score=35.48 Aligned_cols=153 Identities=15% Similarity=0.115 Sum_probs=92.9
Q ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe
Q 017176 62 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 141 (376)
Q Consensus 62 ~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 141 (376)
....|+++...+++.++-.+.++.++++|+|++-+- .|.-. + ...+-+.+-.++|.+++++|+.+--
T Consensus 71 ~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~--~P~y~--~---------~~~~~l~~~f~~va~a~~lPiilYn 137 (293)
T 1f6k_A 71 KDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAV--TPFYY--K---------FSFPEIKHYYDTIIAETGSNMIVYS 137 (293)
T ss_dssp TTSSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEE--CCCSS--C---------CCHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEC--CCCCC--C---------CCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 456799999999999999999999999999999885 45421 1 1246677777888777888988754
Q ss_pred ---cCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCC
Q 017176 142 ---RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 218 (376)
Q Consensus 142 ---R~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s 218 (376)
|.|.+- +.+.+ .++++.-.+-.|--..+ +...+.++++..++.. +.+|+=
T Consensus 138 ~P~~tg~~l--~~~~~----~~La~~pnIvgiK~s~g------------------d~~~~~~~~~~~~~f~-v~~G~d-- 190 (293)
T 1f6k_A 138 IPFLTGVNM--GIEQF----GELYKNPKVLGVKFTAG------------------DFYLLERLKKAYPNHL-IWAGFD-- 190 (293)
T ss_dssp CHHHHCCCC--CHHHH----HHHHTSTTEEEEEECSC------------------CHHHHHHHHHHCTTSE-EEECCG--
T ss_pred CccccCcCC--CHHHH----HHHhcCCCEEEEEECCC------------------CHHHHHHHHHhCCCeE-EEECcH--
Confidence 334332 22222 23333222333332221 1344455554444544 445542
Q ss_pred HHHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhC
Q 017176 219 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256 (376)
Q Consensus 219 ~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 256 (376)
+.+...+..|++|++.+.+-+ -|..+.+.++....|
T Consensus 191 -~~~~~~l~~G~~G~is~~~n~-~P~~~~~l~~a~~~G 226 (293)
T 1f6k_A 191 -EMMLPAASLGVDGAIGSTFNV-NGVRARQIFELTKAG 226 (293)
T ss_dssp -GGHHHHHHTTCSEEEESTHHH-HHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHCCCcEEEeCHHHh-hHHHHHHHHHHHHCC
Confidence 235566678999999988764 466554444443345
|
| >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A | Back alignment and structure |
|---|
Probab=91.54 E-value=0.81 Score=42.86 Aligned_cols=88 Identities=7% Similarity=0.012 Sum_probs=55.2
Q ss_pred HHHHHHHHCCCCEEEecCCCCCccc-cCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHHHHHHH
Q 017176 81 KATELANAYNYDEINLNCGCPSPKV-AGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDF 157 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~v-~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~~~~~~ 157 (376)
-.|++++++|||.|=+...+-.... ...|. | .-..+.+...++.|.+.+ +.||++-+-.|+.+. +.+.+.
T Consensus 36 ~sA~l~e~aGf~ai~vsG~~~a~s~~G~pD~-~---~vt~~em~~~~~~i~r~~~~~~PviaD~d~Gyg~~---~~v~~~ 108 (307)
T 3lye_A 36 LSARTAMELGFKSLYMTGAGTTASRLGQPDL-A---IAQLHDMRDNADMIANLDPFGPPLIADMDTGYGGP---IMVART 108 (307)
T ss_dssp HHHHHHHHTTCSCEEECHHHHHHHHHCCCSS-S---CSCHHHHHHHHHHHHTSSTTSCCEEEECTTCSSSH---HHHHHH
T ss_pred HHHHHHHHcCCCEEEeccHHHHHHhcCCCCC-C---CCCHHHHHHHHHhhhccCCCCCcEEEECCCCCCCH---HHHHHH
Confidence 4678889999999977421110000 01111 1 234566777788887765 499999999997543 233333
Q ss_pred HHHHhhcCCccEEEEccCc
Q 017176 158 IYKVSSLSPTRHFIIHSRK 176 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh~r~ 176 (376)
+. .++++|++.|++-+..
T Consensus 109 v~-~l~~aGaagv~iEDq~ 126 (307)
T 3lye_A 109 VE-HYIRSGVAGAHLEDQI 126 (307)
T ss_dssp HH-HHHHTTCCEEEECCBC
T ss_pred HH-HHHHcCCeEEEEcCCC
Confidence 33 3456999999998765
|
| >1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A* | Back alignment and structure |
|---|
Probab=91.41 E-value=1.3 Score=42.31 Aligned_cols=146 Identities=15% Similarity=0.148 Sum_probs=82.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCc-----------------------------------------cccCCCCccc
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSP-----------------------------------------KVAGHGCFGV 113 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~-----------------------------------------~v~r~g~yG~ 113 (376)
+.+...+.|+.++++|+|.+-...-.|.. ....-..-|+
T Consensus 118 s~e~a~~~a~~~k~aGa~~vr~q~fKprTs~~~f~glg~egl~~l~~~~~e~Gl~~~te~~d~~~~~~l~~~vd~lkIgA 197 (350)
T 1vr6_A 118 GREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVTEALGEDDLPKVAEYADIIQIGA 197 (350)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECBSCCCCCSTTSCCCCTHHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHHCSEEEECG
T ss_pred CHHHHHHHHHHHHHcCCCeeeeeEEeCCCChHhhcCCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCCEEEECc
Confidence 57778888888889998887654322211 0011122366
Q ss_pred cccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEE--ccCccccCCCCCCCCCCCC
Q 017176 114 SLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII--HSRKALLNGISPAENRTIP 191 (376)
Q Consensus 114 ~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~v--h~r~~~~~g~~~~~~~~~~ 191 (376)
..+.+.+++.++- .++.||.+|.-.. .+++++...+..+ ...|...+++ ||.+. +.+. ...
T Consensus 198 r~~~n~~LL~~va-----~~~kPVilk~G~~----~tl~ei~~Ave~i-~~~GN~~viLceRG~~t-yp~~------~~~ 260 (350)
T 1vr6_A 198 RNAQNFRLLSKAG-----SYNKPVLLKRGFM----NTIEEFLLSAEYI-ANSGNTKIILCERGIRT-FEKA------TRN 260 (350)
T ss_dssp GGTTCHHHHHHHH-----TTCSCEEEECCTT----CCHHHHHHHHHHH-HHTTCCCEEEEECCBCC-SCCS------SSS
T ss_pred ccccCHHHHHHHH-----ccCCcEEEcCCCC----CCHHHHHHHHHHH-HHCCCCeEEEEeCCCCC-CCCc------Chh
Confidence 6666666655543 3589999996653 1344544433333 3578755554 34321 1111 112
Q ss_pred cccHHHHHHHHhhCCCCeEEEe----cCCCC--HHHHHHHHHcCcCeeEEchH
Q 017176 192 PLKYEYYYALLRDFPDLTFTLN----GGINT--VDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 192 ~~~~~~v~~~~~~~~~ipVi~n----GgI~s--~~da~~~l~~Gad~VmiGRa 238 (376)
.+++..+..+++.+ ++||++. +|-.+ .+-+..++..||||+||=+=
T Consensus 261 ~vdl~ai~~lk~~~-~lpVi~dssHs~G~~~~v~~~a~AAvA~GA~Gl~IE~H 312 (350)
T 1vr6_A 261 TLDISAVPIIRKES-HLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVH 312 (350)
T ss_dssp BCCTTHHHHHHHHB-SSCEEECHHHHHCSGGGHHHHHHHHHHHTCSEEEEEBC
T ss_pred hhhHHHHHHHHHhh-CCCEEEeCCCCCcccchHHHHHHHHHHhCCCEEEEEec
Confidence 34455666666654 7999772 23332 44455666789999998653
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=91.36 E-value=4.9 Score=37.30 Aligned_cols=126 Identities=15% Similarity=0.068 Sum_probs=76.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 152 (376)
|.+.+.+-++.+.+.|.|+|-++.. +|+ +..| ..+.-.++++.+.+.+ .+||.+-+.. .++.
T Consensus 31 D~~~l~~lv~~li~~Gv~gl~v~Gt--------TGE-~~~L--s~eEr~~v~~~~~~~~~grvpViaGvg~-----~~t~ 94 (301)
T 1xky_A 31 DFAKTTKLVNYLIDNGTTAIVVGGT--------TGE-SPTL--TSEEKVALYRHVVSVVDKRVPVIAGTGS-----NNTH 94 (301)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESST--------TTT-GGGS--CHHHHHHHHHHHHHHHTTSSCEEEECCC-----SCHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc--------ccC-hhhC--CHHHHHHHHHHHHHHhCCCceEEeCCCC-----CCHH
Confidence 6788999999999999999988642 344 3333 3444455555555443 4788775432 2345
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE-e-----cCCCCHHHHHHHH
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-N-----GGINTVDEVNAAL 226 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~-n-----GgI~s~~da~~~l 226 (376)
+.++. ++.+++.|+|++-+-.-. |...+ ...-++++.++.+.. ++||+. | |--.+++.+.++.
T Consensus 95 ~ai~l-a~~A~~~Gadavlv~~P~--y~~~s-------~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~~~~~~~La 163 (301)
T 1xky_A 95 ASIDL-TKKATEVGVDAVMLVAPY--YNKPS-------QEGMYQHFKAIAEST-PLPVMLYNVPGRSIVQISVDTVVRLS 163 (301)
T ss_dssp HHHHH-HHHHHHTTCSEEEEECCC--SSCCC-------HHHHHHHHHHHHHTC-SSCEEEEECHHHHSSCCCHHHHHHHH
T ss_pred HHHHH-HHHHHhcCCCEEEEcCCC--CCCCC-------HHHHHHHHHHHHHhc-CCCEEEEeCccccCCCCCHHHHHHHH
Confidence 55554 455678999999876421 11110 011245666776654 899864 4 4446788877775
Q ss_pred H
Q 017176 227 R 227 (376)
Q Consensus 227 ~ 227 (376)
+
T Consensus 164 ~ 164 (301)
T 1xky_A 164 E 164 (301)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=91.35 E-value=1.2 Score=42.15 Aligned_cols=94 Identities=13% Similarity=0.077 Sum_probs=58.7
Q ss_pred ccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEE
Q 017176 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 211 (376)
Q Consensus 132 ~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi 211 (376)
..+.|+.+.+..|++. +++ .+.++..|+|+|.+|....... ..+....... ..++.+.++++.. ++||+
T Consensus 114 ~~~~pv~~~i~~~~~~----~~~----~~~~~~~gad~i~i~~~~~~~~-~~~~~~~~~~-~~~~~i~~vr~~~-~~Pv~ 182 (349)
T 1p0k_A 114 NPNGLIFANLGSEATA----AQA----KEAVEMIGANALQIHLNVIQEI-VMPEGDRSFS-GALKRIEQICSRV-SVPVI 182 (349)
T ss_dssp CSSSCEEEEEETTCCH----HHH----HHHHHHTTCSEEEEEECTTTTC---------CT-THHHHHHHHHHHC-SSCEE
T ss_pred CCCceeEEeecCCCCH----HHH----HHHHHhcCCCeEEecccchhhh-cCCCCCcchH-HHHHHHHHHHHHc-CCCEE
Confidence 3578888877655432 222 2345568999999987543111 1110001110 1256777777765 89998
Q ss_pred Ee--cCCCCHHHHHHHHHcCcCeeEEc
Q 017176 212 LN--GGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 212 ~n--GgI~s~~da~~~l~~Gad~VmiG 236 (376)
.- |...+.+++..+.+.|||+|.+.
T Consensus 183 vK~~~~~~~~~~a~~a~~~Gad~I~v~ 209 (349)
T 1p0k_A 183 VKEVGFGMSKASAGKLYEAGAAAVDIG 209 (349)
T ss_dssp EEEESSCCCHHHHHHHHHHTCSEEEEE
T ss_pred EEecCCCCCHHHHHHHHHcCCCEEEEc
Confidence 75 55578999999989999999984
|
| >3qw3_A Orotidine-5-phosphate decarboxylase/orotate phosphoribosyltransferase, putative (OMPDCASE-OPRTASE,...; orotidine monophosphate decarboxylase; 1.70A {Leishmania infantum} | Back alignment and structure |
|---|
Probab=91.34 E-value=2.6 Score=38.29 Aligned_cols=141 Identities=16% Similarity=0.163 Sum_probs=76.3
Q ss_pred CCCCEEEEec-CCCHHHHHHHHHHHH-HCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEE
Q 017176 63 EQHPIVLQIG-GSNLDNLAKATELAN-AYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 140 (376)
Q Consensus 63 ~~~p~~vQL~-g~~~~~~~~aa~~~~-~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vK 140 (376)
.+.++++=+- |--|.....+++.+. ++|+|.|.+|. ||| .+.++...+..+.-|+|=
T Consensus 75 ~g~~VflDlK~~DI~nTv~~~a~~~~~~lg~d~vTvh~------------~~G---------~~~l~~~~~~~~~gv~vL 133 (255)
T 3qw3_A 75 AGIPVVLDAKRGDIADTADAYATSAFKHLNAHAITASP------------YMG---------SDSLQPFMRYPDKAVFVL 133 (255)
T ss_dssp TTCCBEEEEEECCCHHHHHHHHHHHHTTSCCSEEEECC------------TTC---------HHHHHHHHTCTTSEEEEE
T ss_pred CCCeEEEEeecCCcHHHHHHHHHHHHHHcCCCEEEEcc------------cCC---------HHHHHHHHHhhCCceEEE
Confidence 5667777664 445667777777664 69999999973 222 123333333333344444
Q ss_pred ecCCCCC---Cc-------c-HHHHHHHHHHH-hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCC
Q 017176 141 CRIGVDD---HD-------S-YNQLCDFIYKV-SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDL 208 (376)
Q Consensus 141 iR~g~~~---~~-------~-~~~~~~~i~~~-~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~i 208 (376)
++.+-++ .. + .+.+++. ++. ..+.|.+.+.+.+.. -+.+..+++..++.
T Consensus 134 ~~tS~~~~~~~q~~~~~~~~~~~~V~~~-a~~~~~~~g~~GvV~~at~------------------~~e~~~ir~~~~~~ 194 (255)
T 3qw3_A 134 CKTSNKGSNDLQCLRVGDRYLYEAVAER-AEGPWNVNGNVGLVVGATD------------------PVALARVRARAPTL 194 (255)
T ss_dssp EECCSGGGGTTTTSEETTEEHHHHHHHH-HHTGGGGGSCEEEEECSSC------------------HHHHHHHHHHCSSC
T ss_pred EeCCCccHHHHHhcccCCCCHHHHHHHH-HHHHhhhhCCeEEEECCCC------------------HHHHHHHHHHCCCC
Confidence 4433221 11 2 2344443 233 445789988776532 12234455555555
Q ss_pred eEEEecCCCC-HHHHHHHHHcCcC----e--eEEchHHhhCCc
Q 017176 209 TFTLNGGINT-VDEVNAALRKGAH----H--VMVGRAAYQNPW 244 (376)
Q Consensus 209 pVi~nGgI~s-~~da~~~l~~Gad----~--VmiGRa~l~~P~ 244 (376)
+++. =||.- ..+..++++.|+| + +.+||+++..++
T Consensus 195 ~~l~-PGIg~qg~tp~~a~~~G~d~~~~~~livvGR~I~~A~d 236 (255)
T 3qw3_A 195 WFLV-PGIGAQGGSLKASLDAGLRADGSGMLINVSRGLARAAD 236 (255)
T ss_dssp CEEE-CCC-----CHHHHHHHHCCTTSCCEEEEESHHHHTSSC
T ss_pred eEEE-CCcCCCCCCHHHHHHcCCCcccCeeEEEeChhhcCCCC
Confidence 5543 33321 1244555666788 5 999999998765
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=91.28 E-value=2.3 Score=36.81 Aligned_cols=120 Identities=13% Similarity=0.052 Sum_probs=68.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcc-cCccEEE--EecCCCCCCcc
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVSV--KCRIGVDDHDS 150 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~-~~~pv~v--KiR~g~~~~~~ 150 (376)
.+.++..+.++.+. .|+|.|++.. |.. . .+| .++++++|+. .+.|+.+ |+..+ .
T Consensus 10 ~~~~~~~~~~~~~~-~~~diie~G~--p~~--~---~~g----------~~~i~~ir~~~~~~~i~~~~~~~~~----~- 66 (211)
T 3f4w_A 10 LTLPEAMVFMDKVV-DDVDIIEVGT--PFL--I---REG----------VNAIKAIKEKYPHKEVLADAKIMDG----G- 66 (211)
T ss_dssp CCHHHHHHHHHHHG-GGCSEEEECH--HHH--H---HHT----------THHHHHHHHHCTTSEEEEEEEECSC----H-
T ss_pred CCHHHHHHHHHHhh-cCccEEEeCc--HHH--H---hcc----------HHHHHHHHHhCCCCEEEEEEEeccc----h-
Confidence 45666666666664 4899999865 542 1 123 3567777776 4778754 33321 1
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEe-cCCCCH-HHHHHHHHc
Q 017176 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN-GGINTV-DEVNAALRK 228 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~n-GgI~s~-~da~~~l~~ 228 (376)
+..+ +.+.++|+|.|++|..... -....+.+..++. +++++.. =...++ +.++.+.+.
T Consensus 67 -~~~~----~~~~~~Gad~v~v~~~~~~--------------~~~~~~~~~~~~~-g~~~~v~~~~~~t~~~~~~~~~~~ 126 (211)
T 3f4w_A 67 -HFES----QLLFDAGADYVTVLGVTDV--------------LTIQSCIRAAKEA-GKQVVVDMICVDDLPARVRLLEEA 126 (211)
T ss_dssp -HHHH----HHHHHTTCSEEEEETTSCH--------------HHHHHHHHHHHHH-TCEEEEECTTCSSHHHHHHHHHHH
T ss_pred -HHHH----HHHHhcCCCEEEEeCCCCh--------------hHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHHc
Confidence 1112 2234699999999974310 0122233333443 5666542 335565 557777779
Q ss_pred CcCeeEEc
Q 017176 229 GAHHVMVG 236 (376)
Q Consensus 229 Gad~VmiG 236 (376)
|+|.|.+.
T Consensus 127 g~d~i~v~ 134 (211)
T 3f4w_A 127 GADMLAVH 134 (211)
T ss_dssp TCCEEEEE
T ss_pred CCCEEEEc
Confidence 99998774
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=91.23 E-value=8.9 Score=35.24 Aligned_cols=153 Identities=16% Similarity=0.122 Sum_probs=92.5
Q ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe
Q 017176 62 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 141 (376)
Q Consensus 62 ~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 141 (376)
....|+++.+.+++.++-.+.++.++++|+|++-+- .|.-. + -..+-+.+-.++|.+++++|+.+--
T Consensus 68 ~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~--~P~y~--~---------~~~~~l~~~f~~ia~a~~lPiilYn 134 (291)
T 3tak_A 68 NKRIPIIAGTGANSTREAIELTKAAKDLGADAALLV--TPYYN--K---------PTQEGLYQHYKAIAEAVELPLILYN 134 (291)
T ss_dssp TTSSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEE--CCCSS--C---------CCHHHHHHHHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEc--CCCCC--C---------CCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 456799999999999999999999999999999874 45421 1 1346677888888888899998763
Q ss_pred ---cCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCC
Q 017176 142 ---RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGIN 217 (376)
Q Consensus 142 ---R~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~ 217 (376)
|.|.+- +.+ + +.++.+--.+-.|--..+ ++..+.++++.. +++. +.+|+
T Consensus 135 ~P~~tg~~l--~~~-~---~~~La~~pnivgiK~ssg------------------d~~~~~~~~~~~~~~f~-v~~G~-- 187 (291)
T 3tak_A 135 VPGRTGVDL--SND-T---AVRLAEIPNIVGIKDATG------------------DVPRGKALIDALNGKMA-VYSGD-- 187 (291)
T ss_dssp CHHHHSCCC--CHH-H---HHHHTTSTTEEEEEECSC------------------CHHHHHHHHHHHTTSSE-EEECC--
T ss_pred cccccCCCC--CHH-H---HHHHHcCCCEEEEEeCCC------------------CHHHHHHHHHHcCCCeE-EEECc--
Confidence 223332 222 2 233432222333332211 134444544433 2444 45665
Q ss_pred CHHHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhC
Q 017176 218 TVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256 (376)
Q Consensus 218 s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 256 (376)
-+.+...+..|++|+..+.+-+ -|..+.+.++....|
T Consensus 188 -d~~~~~~l~~G~~G~is~~~n~-~P~~~~~l~~a~~~G 224 (291)
T 3tak_A 188 -DETAWELMLLGADGNISVTANI-APKAMSEVCAVAIAK 224 (291)
T ss_dssp -HHHHHHHHHTTCCEEEESGGGT-CHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHCCCCEEEechhhh-cHHHHHHHHHHHHCC
Confidence 2345566778999999877653 466654444443344
|
| >4h83_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, enzyme function initiative; 2.09A {Marine actinobacterium PHSC20C1} PDB: 3no1_A 3msy_A | Back alignment and structure |
|---|
Probab=91.22 E-value=1.7 Score=41.90 Aligned_cols=124 Identities=6% Similarity=0.010 Sum_probs=82.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccH
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSY 151 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~ 151 (376)
..++.+++.++.+.+.||..+-+..|. .+++.-.+.++++|+.+ ++.+.|-.--+|+ .
T Consensus 163 ~~~~~~~~~~~~~~~~G~~~~Kikvg~----------------~~~~~d~~~v~avR~~~G~~~~l~vDaN~~~~----~ 222 (388)
T 4h83_A 163 EPLGSIADEMHNYQELGLAGVKFKVGG----------------LSAAEDAARITAAREAAGDDFIICIDANQGYK----P 222 (388)
T ss_dssp CTTCSHHHHHHHHHHHTBSEEEEECSS----------------SCHHHHHHHHHHHHHHHCSSSEEEEECTTCBC----H
T ss_pred CCHHHHHHHHHHHHHcCCceEeecCCC----------------CCHHHHHHHHHHHHHhcCCCeEEEEecCcCCC----H
Confidence 345778888888888899999885431 23344456677888776 4556665555564 3
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCc-ccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cC
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP-LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KG 229 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~-~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~G 229 (376)
++.+++ .+.+++.++.+|. . .+++ -.++..+++.+.. ++||.+.=.+.+..++.++++ ..
T Consensus 223 ~~A~~~-~~~l~~~~~~~iE----e------------P~~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~i~~~a 284 (388)
T 4h83_A 223 AVAVDL-SRRIADLNIRWFE----E------------PVEWHNDKRSMRDVRYQG-SVPVCAGQTEFSASGCRDLMETGA 284 (388)
T ss_dssp HHHHHH-HHHTTTSCCCCEE----S------------CBCSTTHHHHHHHHHHHS-SSCEEECTTCSSHHHHHHHHHHTC
T ss_pred HHHHHH-HHHhhhcCcceee----c------------CcccccchHHHHHHHhhc-CCCccCCccccChHhHHHHHHcCC
Confidence 444444 3456778877664 1 1111 1255566666664 899999999999999999998 45
Q ss_pred cCeeEE
Q 017176 230 AHHVMV 235 (376)
Q Consensus 230 ad~Vmi 235 (376)
+|.|++
T Consensus 285 ~d~i~~ 290 (388)
T 4h83_A 285 IDVCNF 290 (388)
T ss_dssp CSEECC
T ss_pred CCeEee
Confidence 787754
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=90.99 E-value=1.2 Score=38.87 Aligned_cols=82 Identities=11% Similarity=0.041 Sum_probs=52.9
Q ss_pred CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCe-EEE
Q 017176 134 NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLT-FTL 212 (376)
Q Consensus 134 ~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ip-Vi~ 212 (376)
..|+..-++. . +.+++.+.+. .+.+.|+++|.+.-.+. ...+.+.++.+.+ ++| +++
T Consensus 6 ~~~i~~~i~~--~---d~~~~~~~~~-~~~~~G~~~i~l~~~~~---------------~~~~~i~~i~~~~-~~~l~vg 63 (212)
T 2v82_A 6 KLPLIAILRG--I---TPDEALAHVG-AVIDAGFDAVEIPLNSP---------------QWEQSIPAIVDAY-GDKALIG 63 (212)
T ss_dssp SSCEEEECTT--C---CHHHHHHHHH-HHHHHTCCEEEEETTST---------------THHHHHHHHHHHH-TTTSEEE
T ss_pred CCCEEEEEeC--C---CHHHHHHHHH-HHHHCCCCEEEEeCCCh---------------hHHHHHHHHHHhC-CCCeEEE
Confidence 4566665553 2 2334444333 34568999998853321 0145566666654 444 457
Q ss_pred ecCCCCHHHHHHHHHcCcCeeEEch
Q 017176 213 NGGINTVDEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 213 nGgI~s~~da~~~l~~Gad~VmiGR 237 (376)
.|.+.+.+++..+++.|||+|.+|.
T Consensus 64 ~g~~~~~~~i~~a~~~Gad~V~~~~ 88 (212)
T 2v82_A 64 AGTVLKPEQVDALARMGCQLIVTPN 88 (212)
T ss_dssp EECCCSHHHHHHHHHTTCCEEECSS
T ss_pred eccccCHHHHHHHHHcCCCEEEeCC
Confidence 7899999999999999999998764
|
| >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A | Back alignment and structure |
|---|
Probab=90.86 E-value=1.7 Score=40.62 Aligned_cols=88 Identities=14% Similarity=0.128 Sum_probs=54.7
Q ss_pred HHHHHHHHCCCCEEEecCCCCCccc-cCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHH
Q 017176 81 KATELANAYNYDEINLNCGCPSPKV-AGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFI 158 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~v-~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i 158 (376)
-.|++++++|||.|=+...+-.... ...|. | .-..+.+..-++.|.+.+ +.||++-+-.|+.+. +.+.+.+
T Consensus 29 ~sA~l~e~aGf~ai~vsG~~~a~~~~G~pD~-~---~vt~~em~~~~~~I~~~~~~~PviaD~d~Gyg~~---~~v~~tv 101 (302)
T 3fa4_A 29 LSARVALSAGFDALYMTGAGTAASVHGQADL-G---ICTLNDMRANAEMISNISPSTPVIADADTGYGGP---IMVARTT 101 (302)
T ss_dssp HHHHHHHTTTCSCEEECHHHHHHHHHSCCSS-S---CCCHHHHHHHHHHHHTTSTTSCEEEECTTTTSSH---HHHHHHH
T ss_pred HHHHHHHHcCCCEEEeCcHHHHHHHcCCCCC-C---cCCHHHHHHHHHHHHhhccCCCEEEECCCCCCCH---HHHHHHH
Confidence 4678889999999977421111000 01111 1 223466667777887764 899999999997543 2334433
Q ss_pred HHHhhcCCccEEEEccCc
Q 017176 159 YKVSSLSPTRHFIIHSRK 176 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~ 176 (376)
. .++++|++.|++-+..
T Consensus 102 ~-~l~~aGaagv~iEDq~ 118 (302)
T 3fa4_A 102 E-QYSRSGVAAFHIEDQV 118 (302)
T ss_dssp H-HHHHTTCCEEEECSBC
T ss_pred H-HHHHcCCcEEEECCCC
Confidence 3 3456999999998754
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=90.78 E-value=11 Score=35.26 Aligned_cols=153 Identities=14% Similarity=0.096 Sum_probs=93.6
Q ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe
Q 017176 62 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 141 (376)
Q Consensus 62 ~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 141 (376)
....|+++++.+++.++-.+.++.++++|+|++-+- .|... + -..+.+.+-.++|.+++++||.+--
T Consensus 91 ~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~--~P~y~--~---------~s~~~l~~~f~~va~a~~lPiilYn 157 (315)
T 3na8_A 91 AHRVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVL--PISYW--K---------LNEAEVFQHYRAVGEAIGVPVMLYN 157 (315)
T ss_dssp TTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEC--CCCSS--C---------CCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred CCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEEC--CCCCC--C---------CCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 456799999999999999999999999999999883 45421 1 1346778888888888899998764
Q ss_pred ---cCCCCCCccHHHHHHHHHHH-hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCC
Q 017176 142 ---RIGVDDHDSYNQLCDFIYKV-SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGI 216 (376)
Q Consensus 142 ---R~g~~~~~~~~~~~~~i~~~-~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI 216 (376)
|.|.+- +. +++ .++ .+--.+-.|--..+ ++..+.++++..+ ++.|+ +|+=
T Consensus 158 ~P~~tg~~l--~~-~~~---~~L~a~~pnIvgiKdssg------------------d~~~~~~~~~~~~~~f~v~-~G~D 212 (315)
T 3na8_A 158 NPGTSGIDM--SV-ELI---LRIVREVDNVTMVKESTG------------------DIQRMHKLRLLGEGRVPFY-NGCN 212 (315)
T ss_dssp CHHHHSCCC--CH-HHH---HHHHHHSTTEEEEEECSS------------------CHHHHHHHHHHTTTCSCEE-ECCG
T ss_pred CcchhCcCC--CH-HHH---HHHHhcCCCEEEEECCCC------------------CHHHHHHHHHHcCCCEEEE-eCch
Confidence 233332 22 222 233 22223433332221 1444555555443 44444 4442
Q ss_pred CCHHHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhC
Q 017176 217 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256 (376)
Q Consensus 217 ~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 256 (376)
+.+...+..|++|++.+.+-+ -|..+.+.++....|
T Consensus 213 ---~~~l~~l~~G~~G~is~~an~-~P~~~~~l~~a~~~G 248 (315)
T 3na8_A 213 ---PLALEAFVAGAKGWCSAAPNL-IPTLNGQLYQAVLDG 248 (315)
T ss_dssp ---GGHHHHHHHTCSEEEESGGGT-CHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHCCCCEEEechhhh-CHHHHHHHHHHHhcC
Confidence 224556667999999887754 466654444443344
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=90.70 E-value=3.9 Score=37.78 Aligned_cols=127 Identities=13% Similarity=0.124 Sum_probs=79.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccH
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSY 151 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~ 151 (376)
-|.+.+.+-++.+.+.|.|+|-++.. +|+ +..| ..+.-.++++.+.+.+ .+||.+-+.. .++
T Consensus 21 iD~~~l~~lv~~li~~Gv~gl~~~Gt--------tGE-~~~L--s~~Er~~v~~~~~~~~~gr~pviaGvg~-----~~t 84 (294)
T 3b4u_A 21 VDIDAMIAHARRCLSNGCDSVTLFGT--------TGE-GCSV--GSRERQAILSSFIAAGIAPSRIVTGVLV-----DSI 84 (294)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEEESST--------TTT-GGGS--CHHHHHHHHHHHHHTTCCGGGEEEEECC-----SSH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcc--------ccC-hhhC--CHHHHHHHHHHHHHHhCCCCcEEEeCCC-----ccH
Confidence 36788889999998999999988642 344 3333 4555567777776655 4788875442 234
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCC-CCCCCCCCCCcccHHHHHHHHhhCC--CCeEEE-e-----cCCCCHHHH
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNG-ISPAENRTIPPLKYEYYYALLRDFP--DLTFTL-N-----GGINTVDEV 222 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g-~~~~~~~~~~~~~~~~v~~~~~~~~--~ipVi~-n-----GgI~s~~da 222 (376)
.+.++. ++.+++.|+|++-+-.-. +.. .+ ...-++++.++.+..| ++||+. | |--.+++.+
T Consensus 85 ~~ai~l-a~~A~~~Gadavlv~~P~--y~~~~s-------~~~l~~~f~~va~a~p~~~lPiilYn~P~~tg~~l~~~~~ 154 (294)
T 3b4u_A 85 EDAADQ-SAEALNAGARNILLAPPS--YFKNVS-------DDGLFAWFSAVFSKIGKDARDILVYNIPSVTMVTLSVELV 154 (294)
T ss_dssp HHHHHH-HHHHHHTTCSEEEECCCC--SSCSCC-------HHHHHHHHHHHHHHHCTTCCCEEEEECHHHHSCCCCHHHH
T ss_pred HHHHHH-HHHHHhcCCCEEEEcCCc--CCCCCC-------HHHHHHHHHHHHHhcCCCCCcEEEEECcchhCcCCCHHHH
Confidence 555554 455678999999886421 111 11 0112456667766654 788764 4 434578887
Q ss_pred HHHH
Q 017176 223 NAAL 226 (376)
Q Consensus 223 ~~~l 226 (376)
.++.
T Consensus 155 ~~La 158 (294)
T 3b4u_A 155 GRLK 158 (294)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7776
|
| >3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A* | Back alignment and structure |
|---|
Probab=90.53 E-value=2.2 Score=39.40 Aligned_cols=109 Identities=11% Similarity=0.095 Sum_probs=62.3
Q ss_pred ccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEE-ccCccccCCCCCCCCCC
Q 017176 111 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII-HSRKALLNGISPAENRT 189 (376)
Q Consensus 111 yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~v-h~r~~~~~g~~~~~~~~ 189 (376)
.|+..+++.+++.++- .++.||.+|.-...+- +++...+ .. +.+.|.+.|++ |.++. + +.. +
T Consensus 116 IgA~~~~n~~LLr~va-----~~gkPVilK~G~~~t~-~ei~~av---e~-i~~~Gn~~i~L~erg~~-y-~~~---~-- 178 (285)
T 3sz8_A 116 VPAFLARQTDLVVAIA-----KAGKPVNVKKPQFMSP-TQLKHVV---SK-CGEVGNDRVMLCERGSS-F-GYD---N-- 178 (285)
T ss_dssp ECGGGTTCHHHHHHHH-----HTSSCEEEECCTTSCG-GGTHHHH---HH-HHHTTCCCEEEEECCEE-C-SSS---C--
T ss_pred ECccccCCHHHHHHHH-----ccCCcEEEeCCCCCCH-HHHHHHH---HH-HHHcCCCcEEEEeCCCC-C-CCC---c--
Confidence 3777778888655532 3688999997663221 2233332 22 33577765555 66552 2 111 0
Q ss_pred CCcccHHHHHHHHhhCCCCeEEEecCCC-----------C------HHHHHHHHHcCcCeeEEch
Q 017176 190 IPPLKYEYYYALLRDFPDLTFTLNGGIN-----------T------VDEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 190 ~~~~~~~~v~~~~~~~~~ipVi~nGgI~-----------s------~~da~~~l~~Gad~VmiGR 237 (376)
..+++..+..+++.++++||+...+=. . ..-+..++..||||++|=+
T Consensus 179 -~~vdl~~i~~lk~~~~~~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA~GA~gl~IE~ 242 (285)
T 3sz8_A 179 -LVVDMLGFRQMAETTGGCPVIFDVTHSLQCRDPLGDASGGRRRQVLDLARAGIAVGIAGLFLEA 242 (285)
T ss_dssp -EECCTTHHHHHHHHTTSCCEEEETTTTCC---------------HHHHHHHHHHHCCSEEEEEE
T ss_pred -CccCHHHHHHHHHhCCCCCEEEeCCCccccCCCcCCCCCCchhhHHHHHHHHHHhCCCEEEEEe
Confidence 113455666677666469999842221 1 2345566778999998843
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=90.51 E-value=5.3 Score=37.12 Aligned_cols=125 Identities=12% Similarity=0.088 Sum_probs=75.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 152 (376)
|.+.+.+-++.+.+.|.|+|-++.. +|+ +.+| ..+.-.++++.+.+.+ .+||.+-+.. .++.
T Consensus 31 D~~~l~~lv~~li~~Gv~gl~v~Gt--------TGE-~~~L--s~eEr~~vi~~~~~~~~grvpViaGvg~-----~st~ 94 (306)
T 1o5k_A 31 DLESYERLVRYQLENGVNALIVLGT--------TGE-SPTV--NEDEREKLVSRTLEIVDGKIPVIVGAGT-----NSTE 94 (306)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSG--------GGT-GGGC--CHHHHHHHHHHHHHHHTTSSCEEEECCC-----SCHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCcc--------ccc-hhhC--CHHHHHHHHHHHHHHhCCCCeEEEcCCC-----ccHH
Confidence 6788899999998999999988641 344 3333 3444455555555443 4788875432 2345
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE-e-----cCCCCHHHHHHHH
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-N-----GGINTVDEVNAAL 226 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~-n-----GgI~s~~da~~~l 226 (376)
+.++. ++.+++.|+|++-+-.-. +...+ ...-++++.++.+.. ++||+. | |--.+++.+.++.
T Consensus 95 ~ai~l-a~~A~~~Gadavlv~~P~--y~~~s-------~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~~~~~~~La 163 (306)
T 1o5k_A 95 KTLKL-VKQAEKLGANGVLVVTPY--YNKPT-------QEGLYQHYKYISERT-DLGIVVYNVPGRTGVNVLPETAARIA 163 (306)
T ss_dssp HHHHH-HHHHHHHTCSEEEEECCC--SSCCC-------HHHHHHHHHHHHTTC-SSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred HHHHH-HHHHHhcCCCEEEECCCC--CCCCC-------HHHHHHHHHHHHHhC-CCCEEEEeCccccCcCCCHHHHHHHH
Confidence 55554 445678999999876421 11110 011145666666654 789864 4 4345788877776
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=90.42 E-value=11 Score=35.05 Aligned_cols=153 Identities=12% Similarity=0.074 Sum_probs=93.6
Q ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe
Q 017176 62 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 141 (376)
Q Consensus 62 ~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 141 (376)
....|+++.+.+++.++-.+.++.++++|+|++-+- .|.-. + -..+-+.+-.++|.+++++||.+--
T Consensus 89 ~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~--~P~y~--~---------~~~~~l~~~f~~va~a~~lPiilYn 155 (315)
T 3si9_A 89 AKRVPVVAGAGSNSTSEAVELAKHAEKAGADAVLVV--TPYYN--R---------PNQRGLYTHFSSIAKAISIPIIIYN 155 (315)
T ss_dssp TTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEE--CCCSS--C---------CCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred CCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEC--CCCCC--C---------CCHHHHHHHHHHHHHcCCCCEEEEe
Confidence 456799999999999999999999999999999874 45421 1 1346677888888888899998864
Q ss_pred ---cCCCCCCccHHHHHHHHHHHhh-cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCC
Q 017176 142 ---RIGVDDHDSYNQLCDFIYKVSS-LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGI 216 (376)
Q Consensus 142 ---R~g~~~~~~~~~~~~~i~~~~e-~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI 216 (376)
|.|.+- +. +++ .++.+ --.+-.|--..+. +..+.++++.. +++.| .+|+=
T Consensus 156 ~P~~tg~~l--~~-~~~---~~La~~~pnIvgiKdssgd------------------~~~~~~l~~~~~~~f~v-~~G~d 210 (315)
T 3si9_A 156 IPSRSVIDM--AV-ETM---RDLCRDFKNIIGVKDATGK------------------IERASEQREKCGKDFVQ-LSGDD 210 (315)
T ss_dssp CHHHHSCCC--CH-HHH---HHHHHHCTTEEEEEECSCC------------------THHHHHHHHHHCSSSEE-EESCG
T ss_pred CchhhCCCC--CH-HHH---HHHHhhCCCEEEEEeCCCC------------------HHHHHHHHHHcCCCeEE-EecCH
Confidence 334332 22 222 33333 2234333322211 23344444433 24544 56652
Q ss_pred CCHHHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhC
Q 017176 217 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256 (376)
Q Consensus 217 ~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 256 (376)
+.+...+..|++|++.+.+-+ -|..+.+.++....|
T Consensus 211 ---~~~l~~l~~G~~G~is~~an~-~P~~~~~l~~a~~~G 246 (315)
T 3si9_A 211 ---CTALGFNAHGGVGCISVSSNV-APKLCAQLHAACLCS 246 (315)
T ss_dssp ---GGHHHHHHTTCCEEEESGGGT-CHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHcCCCEEEecHHHh-hHHHHHHHHHHHHcC
Confidence 224456678999999887754 377655544444445
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=90.39 E-value=4.4 Score=38.17 Aligned_cols=127 Identities=9% Similarity=0.035 Sum_probs=78.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccH
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSY 151 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~ 151 (376)
-|.+.+.+-++.+.+.|.|+|-++.. +|+ +..| ..+.-.++++.+++.+ .+||.+-+.. .++
T Consensus 52 iD~~~l~~lv~~li~~Gv~Gl~v~Gt--------TGE-~~~L--s~eEr~~vi~~~ve~~~grvpViaGvg~-----~st 115 (332)
T 2r8w_A 52 VDIEAFSALIARLDAAEVDSVGILGS--------TGI-YMYL--TREERRRAIEAAATILRGRRTLMAGIGA-----LRT 115 (332)
T ss_dssp BCHHHHHHHHHHHHHHTCSEEEESST--------TTT-GGGS--CHHHHHHHHHHHHHHHTTSSEEEEEECC-----SSH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcc--------ccC-hhhC--CHHHHHHHHHHHHHHhCCCCcEEEecCC-----CCH
Confidence 36788999999888899999988642 344 3333 3444455666555544 4788875432 234
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE-e-----cCCCCHHHHHHH
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-N-----GGINTVDEVNAA 225 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~-n-----GgI~s~~da~~~ 225 (376)
.+.++. ++.+++.|+|++-+-.- .+...+ ...-++++.++.+.. ++|||. | |--.+++.+.++
T Consensus 116 ~eai~l-a~~A~~~Gadavlv~~P--~Y~~~s-------~~~l~~~f~~VA~a~-~lPiilYn~P~~tg~~l~~e~~~~L 184 (332)
T 2r8w_A 116 DEAVAL-AKDAEAAGADALLLAPV--SYTPLT-------QEEAYHHFAAVAGAT-ALPLAIYNNPTTTRFTFSDELLVRL 184 (332)
T ss_dssp HHHHHH-HHHHHHHTCSEEEECCC--CSSCCC-------HHHHHHHHHHHHHHC-SSCEEEECCHHHHCCCCCHHHHHHH
T ss_pred HHHHHH-HHHHHhcCCCEEEECCC--CCCCCC-------HHHHHHHHHHHHHhc-CCCEEEEeCccccCcCCCHHHHHHH
Confidence 555554 44567899999987642 111111 011245666777664 799865 4 434688888777
Q ss_pred HH
Q 017176 226 LR 227 (376)
Q Consensus 226 l~ 227 (376)
.+
T Consensus 185 a~ 186 (332)
T 2r8w_A 185 AY 186 (332)
T ss_dssp HT
T ss_pred Hc
Confidence 65
|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
Probab=90.38 E-value=8.1 Score=35.00 Aligned_cols=127 Identities=12% Similarity=0.100 Sum_probs=72.5
Q ss_pred HHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCC----CccHHHHHH
Q 017176 81 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD----HDSYNQLCD 156 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~----~~~~~~~~~ 156 (376)
+.|..+++.|+|-|||+.+=.. | .+--.... ++.+++.+++||-|=+|+--.+ ..+++.+.+
T Consensus 12 ~~a~~A~~~GAdRIELc~~L~~---------G-GlTPS~g~----i~~~~~~~~ipv~vMIRPR~GdF~Ys~~E~~~M~~ 77 (256)
T 1twd_A 12 ECALTAQQNGADRVELCAAPKE---------G-GLTPSLGV----LKSVRQRVTIPVHPIIRPRGGDFCYSDGEFAAILE 77 (256)
T ss_dssp HHHHHHHHTTCSEEEECBCGGG---------T-CBCCCHHH----HHHHHHHCCSCEEEBCCSSSSCSCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEcCCccc---------C-CCCCCHHH----HHHHHHHcCCceEEEECCCCCCCcCCHHHHHHHHH
Confidence 3556678899999999753111 1 12222223 3444556789999988882111 134555555
Q ss_pred HHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecC---CCCHHHHHHHHH-cCcCe
Q 017176 157 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG---INTVDEVNAALR-KGAHH 232 (376)
Q Consensus 157 ~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGg---I~s~~da~~~l~-~Gad~ 232 (376)
.+. .+.+.|+|.+.+-.=+. .| .++.+.+.++++...++||..-=- +.++..+.+.+. .|++-
T Consensus 78 Di~-~~~~~GadGvV~G~Lt~--dg----------~iD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~ale~L~~lG~~r 144 (256)
T 1twd_A 78 DVR-TVRELGFPGLVTGVLDV--DG----------NVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLYTLNNLAELGIAR 144 (256)
T ss_dssp HHH-HHHHTTCSEEEECCBCT--TS----------SBCHHHHHHHHHHHTTSEEEECGGGGGCSCHHHHHHHHHHHTCCE
T ss_pred HHH-HHHHcCCCEEEEeeECC--CC----------CcCHHHHHHHHHHhCCCcEEEECchhccCCHHHHHHHHHHcCCCE
Confidence 444 44579999988643221 11 233566666655444667665322 456666655554 78887
Q ss_pred eE
Q 017176 233 VM 234 (376)
Q Consensus 233 Vm 234 (376)
|.
T Consensus 145 IL 146 (256)
T 1twd_A 145 VL 146 (256)
T ss_dssp EE
T ss_pred EE
Confidence 76
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=90.38 E-value=11 Score=34.72 Aligned_cols=153 Identities=17% Similarity=0.171 Sum_probs=94.5
Q ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe
Q 017176 62 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 141 (376)
Q Consensus 62 ~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 141 (376)
....|+++.+.+++.++-.+.++.++++|+|++-+- .|.-. + -..+.+.+-.++|.+++++|+.+--
T Consensus 69 ~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~--~P~y~--~---------~~~~~l~~~f~~ia~a~~lPiilYn 135 (292)
T 3daq_A 69 DKRVPVIAGTGTNDTEKSIQASIQAKALGADAIMLI--TPYYN--K---------TNQRGLVKHFEAIADAVKLPVVLYN 135 (292)
T ss_dssp TTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEE--CCCSS--C---------CCHHHHHHHHHHHHHHHCSCEEEEE
T ss_pred CCCCcEEEeCCcccHHHHHHHHHHHHHcCCCEEEEC--CCCCC--C---------CCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 456799999999999999999999999999999884 34421 1 1345677778888887889998864
Q ss_pred ---cCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCC--CeEEEecCC
Q 017176 142 ---RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD--LTFTLNGGI 216 (376)
Q Consensus 142 ---R~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~--ipVi~nGgI 216 (376)
|.|.+- +.+ + +.++.+--.+-.|--..+ ++..+.++++..++ .. +.+|+=
T Consensus 136 ~P~~tg~~l--~~~-~---~~~La~~pnivgiK~ssg------------------d~~~~~~~~~~~~~~~f~-v~~G~d 190 (292)
T 3daq_A 136 VPSRTNMTI--EPE-T---VEILSQHPYIVALKDATN------------------DFEYLEEVKKRIDTNSFA-LYSGND 190 (292)
T ss_dssp CHHHHSCCC--CHH-H---HHHHHTSTTEEEEEECCC------------------CHHHHHHHHTTSCTTTSE-EEESCG
T ss_pred cccccCCCC--CHH-H---HHHHhcCCCEEEEEeCCC------------------CHHHHHHHHHHCCCCCEE-EEECCH
Confidence 334332 222 2 233333222333322211 15556666665543 43 455552
Q ss_pred CCHHHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhC
Q 017176 217 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256 (376)
Q Consensus 217 ~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 256 (376)
+.+...+..|++|++.+.+-+ -|..+.+.++....|
T Consensus 191 ---~~~~~~l~~G~~G~is~~~n~-~P~~~~~l~~a~~~g 226 (292)
T 3daq_A 191 ---DNVVEYYQRGGQGVISVIANV-IPKEFQALYDAQQSG 226 (292)
T ss_dssp ---GGHHHHHHTTCCEEEESGGGT-CHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHhcCCCEEEeCHHHh-hHHHHHHHHHHHHcC
Confidence 235556778999999887753 466654444444445
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=90.36 E-value=7 Score=36.00 Aligned_cols=125 Identities=11% Similarity=0.071 Sum_probs=75.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 152 (376)
|.+.+.+-++.+.+.|.|+|=++.. +|+ +.+| ..+.-.++++.+.+.+ .+||.+-+.. .+..
T Consensus 19 D~~~l~~lv~~li~~Gv~gl~~~Gt--------tGE-~~~L--s~~Er~~v~~~~~~~~~grvpviaGvg~-----~~t~ 82 (294)
T 2ehh_A 19 DYEALGNLIEFHVDNGTDAILVCGT--------TGE-SPTL--TFEEHEKVIEFAVKRAAGRIKVIAGTGG-----NATH 82 (294)
T ss_dssp CHHHHHHHHHHHHTTTCCEEEESST--------TTT-GGGS--CHHHHHHHHHHHHHHHTTSSEEEEECCC-----SCHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcc--------ccC-hhhC--CHHHHHHHHHHHHHHhCCCCcEEEecCC-----CCHH
Confidence 6788888899888999999988642 344 3333 3444455555555443 4788774332 2345
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE-e-----cCCCCHHHHHHHH
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-N-----GGINTVDEVNAAL 226 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~-n-----GgI~s~~da~~~l 226 (376)
+.++. ++.+++.|+|++-+-.- .+...+ ...-++++.++.+.. ++||+. | |--.+++.+.++.
T Consensus 83 ~ai~l-a~~A~~~Gadavlv~~P--~y~~~s-------~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~~~~~~~La 151 (294)
T 2ehh_A 83 EAVHL-TAHAKEVGADGALVVVP--YYNKPT-------QRGLYEHFKTVAQEV-DIPIIIYNIPSRTCVEISVDTMFKLA 151 (294)
T ss_dssp HHHHH-HHHHHHTTCSEEEEECC--CSSCCC-------HHHHHHHHHHHHHHC-CSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred HHHHH-HHHHHhcCCCEEEECCC--CCCCCC-------HHHHHHHHHHHHHhc-CCCEEEEeCCcccCcCCCHHHHHHHH
Confidence 55554 45567899999987642 111111 011145666777664 788864 4 4446888887776
|
| >2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=90.23 E-value=0.87 Score=42.07 Aligned_cols=86 Identities=16% Similarity=0.092 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHH---hcccCccEEEEecCCCCCCcc
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI---AANTNVPVSVKCRIGVDDHDS 150 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v---~~~~~~pv~vKiR~g~~~~~~ 150 (376)
.+++....+++.+.++|+|+|-..-|- .. |++-..+.+.+.+.++.. ...++.++.||...|+.+
T Consensus 169 ~d~e~i~~A~~ia~eaGADfVKTSTGf--------~~-~gAT~edv~lm~~~v~~~~~~~~~tg~~vgVKaaGGIrt--- 236 (281)
T 2a4a_A 169 KTEDLIIKTTLAVLNGNADFIKTSTGK--------VQ-INATPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISD--- 236 (281)
T ss_dssp CSHHHHHHHHHHHHTTTCSEEECCCSC--------SS-CCCCHHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSCCS---
T ss_pred CcHHHHHHHHHHHHHhCCCEEEeCCCC--------CC-CCCCHHHHHHHHHHHHHhhcccccCCCCceEEEeCCCCC---
Confidence 355557899999999999999654221 11 444455666666666554 334467889999999874
Q ss_pred HHHHHHHHHHHhhcCCccEEE
Q 017176 151 YNQLCDFIYKVSSLSPTRHFI 171 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~ 171 (376)
.++..+++..-.+..|.++++
T Consensus 237 ~e~al~~i~aga~~lG~~w~~ 257 (281)
T 2a4a_A 237 LNTASHYILLARRFLSSLACH 257 (281)
T ss_dssp HHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHhhhhccccccc
Confidence 445555554444557888866
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=90.22 E-value=2.8 Score=37.26 Aligned_cols=79 Identities=19% Similarity=0.148 Sum_probs=53.2
Q ss_pred cEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecC
Q 017176 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 215 (376)
Q Consensus 136 pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGg 215 (376)
|+..=+|. .+.++..+++ .. +.+.|++.|.+--++. ...+.+++++++++++ +++.|-
T Consensus 18 ~ii~vir~--~~~~~~~~~~---~a-l~~gGv~~iel~~k~~---------------~~~~~i~~l~~~~~~l-~vgaGt 75 (224)
T 1vhc_A 18 KIVPVIAL--DNADDILPLA---DT-LAKNGLSVAEITFRSE---------------AAADAIRLLRANRPDF-LIAAGT 75 (224)
T ss_dssp CEEEEECC--SSGGGHHHHH---HH-HHHTTCCEEEEETTST---------------THHHHHHHHHHHCTTC-EEEEES
T ss_pred CeEEEEeC--CCHHHHHHHH---HH-HHHcCCCEEEEeccCc---------------hHHHHHHHHHHhCcCc-EEeeCc
Confidence 55554565 2323333333 23 3469999988864321 1146677788887665 567777
Q ss_pred CCCHHHHHHHHHcCcCeeEEc
Q 017176 216 INTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 216 I~s~~da~~~l~~Gad~VmiG 236 (376)
+.+.+++..+++.|||+|..+
T Consensus 76 vl~~d~~~~A~~aGAd~v~~p 96 (224)
T 1vhc_A 76 VLTAEQVVLAKSSGADFVVTP 96 (224)
T ss_dssp CCSHHHHHHHHHHTCSEEECS
T ss_pred EeeHHHHHHHHHCCCCEEEEC
Confidence 999999999999999999887
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=90.14 E-value=6.3 Score=36.25 Aligned_cols=132 Identities=11% Similarity=0.058 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 152 (376)
|.+.+.+-++.+.+.|.|+|-++ |.-|-+..-..+.-.++++.+.+.+ .+||.+-+.. .+..
T Consensus 19 D~~~l~~lv~~li~~Gv~gl~~~-----------GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~-----~~t~ 82 (289)
T 2yxg_A 19 DFDGLEENINFLIENGVSGIVAV-----------GTTGESPTLSHEEHKKVIEKVVDVVNGRVQVIAGAGS-----NCTE 82 (289)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEES-----------STTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCC-----SSHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEEC-----------ccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCC-----CCHH
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE------ecCCCCHHHHHHHH
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAAL 226 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~------nGgI~s~~da~~~l 226 (376)
+.++. ++.+++.|+|++-+-. |.-+......-++++.++.+.. ++||+. .|--.+++.+.++.
T Consensus 83 ~ai~l-a~~a~~~Gadavlv~~---------P~y~~~s~~~l~~~f~~ia~a~-~lPiilYn~P~~tg~~l~~~~~~~La 151 (289)
T 2yxg_A 83 EAIEL-SVFAEDVGADAVLSIT---------PYYNKPTQEGLRKHFGKVAESI-NLPIVLYNVPSRTAVNLEPKTVKLLA 151 (289)
T ss_dssp HHHHH-HHHHHHHTCSEEEEEC---------CCSSCCCHHHHHHHHHHHHHHC-SSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred HHHHH-HHHHHhcCCCEEEECC---------CCCCCCCHHHHHHHHHHHHHhc-CCCEEEEeCccccCcCCCHHHHHHHH
Q ss_pred -H-cCcCee
Q 017176 227 -R-KGAHHV 233 (376)
Q Consensus 227 -~-~Gad~V 233 (376)
+ ..+-+|
T Consensus 152 ~~~pnivgi 160 (289)
T 2yxg_A 152 EEYSNISAV 160 (289)
T ss_dssp HHCTTEEEE
T ss_pred HhCCCEEEE
|
| >2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A* | Back alignment and structure |
|---|
Probab=90.10 E-value=1.4 Score=40.62 Aligned_cols=111 Identities=10% Similarity=0.046 Sum_probs=60.2
Q ss_pred ccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEE-EEccCccccCCCCCCCCCC
Q 017176 111 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHF-IIHSRKALLNGISPAENRT 189 (376)
Q Consensus 111 yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I-~vh~r~~~~~g~~~~~~~~ 189 (376)
.|+..+++.+++.++ . .++.||.+|.-...+ ..++...+ . .+...|...+ .+|.++ .+ ++. .
T Consensus 111 Iga~~~~n~~ll~~~----a-~~~kPV~lk~G~~~t-~~e~~~A~---~-~i~~~Gn~~i~L~~rg~-~~-~~~---~-- 173 (280)
T 2qkf_A 111 LPAFLARQTDLVVAM----A-KTGNVVNIKKPQFLS-PSQMKNIV---E-KFHEAGNGKLILCERGS-SF-GYD---N-- 173 (280)
T ss_dssp ECGGGTTBHHHHHHH----H-HTCCEEEEECCTTSC-GGGHHHHH---H-HHHHTTCCCEEEEECCE-EC-STT---C--
T ss_pred ECcccccCHHHHHHH----H-cCCCcEEEECCCCCC-HHHHHHHH---H-HHHHcCCCeEEEEECCC-CC-CCC---c--
Confidence 477778888855554 2 468999999766322 22333332 2 3346787444 456544 22 111 0
Q ss_pred CCcccHHHHHHHHhhCCCCeEEEe-----------cCCCCH------HHHHHHHHcCcCeeEEchHH
Q 017176 190 IPPLKYEYYYALLRDFPDLTFTLN-----------GGINTV------DEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 190 ~~~~~~~~v~~~~~~~~~ipVi~n-----------GgI~s~------~da~~~l~~Gad~VmiGRa~ 239 (376)
..+++..+..+++.++++||+.. |+-... .-+..+.+.||||+||=+=+
T Consensus 174 -~~~dl~~i~~lk~~~~~~pV~~D~sH~~q~~~~~~~~s~g~~~~~~~~a~aava~Ga~G~~IE~H~ 239 (280)
T 2qkf_A 174 -LVVDMLGFGVMKQTCGNLPVIFDVTHSLQTRDAGSAASGGRRAQALDLALAGMATRLAGLFLESHP 239 (280)
T ss_dssp -EECCTTHHHHHHHHTTTCCEEEEHHHHCC----------CHHHHHHHHHHHHHTTCCSEEEEEC--
T ss_pred -cccCHHHHHHHHHhCCCCCEEEECCCCccccCccccccCCchhhHHHHHHHHHHcCCCEEEEeecC
Confidence 11234556667666657899984 222222 23444556899999986543
|
| >3ijl_A Muconate cycloisomerase; enolase superfamily, dipeptide epimerase, L-Pro-D-Glu, nonpr binding; HET: DGL; 1.50A {Bacteroides thetaiotaomicron} PDB: 3iji_A* 3ijq_A* | Back alignment and structure |
|---|
Probab=90.07 E-value=2.3 Score=40.21 Aligned_cols=122 Identities=15% Similarity=0.147 Sum_probs=80.1
Q ss_pred ecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCcc
Q 017176 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDS 150 (376)
Q Consensus 71 L~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~ 150 (376)
+...+++.+.+.++...+ ||..+-+..|.. . -.+.++++|+..+..+.+-..-+|++
T Consensus 130 ~~~~~~e~~~~~a~~~~~-g~~~~K~Kvg~~---------------~----d~~~v~avR~~~~~~l~vDaN~~~t~--- 186 (338)
T 3ijl_A 130 IGIDTPDVVRAKTKECAG-LFNILKVKLGRD---------------N----DKEMIETIRSVTDLPIAVDANQGWKD--- 186 (338)
T ss_dssp CCCCCHHHHHHHHHHHHT-TCSSEEEECSSS---------------C----HHHHHHHHHTTCCCCEEEECTTCCCC---
T ss_pred EeCCCHHHHHHHHHHHHh-cccEEEEecCcH---------------H----HHHHHHHHHhhcCCcEEEECcCCCCC---
Confidence 444688988888887665 899998865421 1 34668888888766566655555632
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCc
Q 017176 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGA 230 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Ga 230 (376)
.++.++++ +.+++.++.+|. . .+++-+++..+++.+.. ++||.+.=.+.+..++.+++ ..+
T Consensus 187 ~~~A~~~~-~~l~~~~i~~iE----e------------P~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~~-~a~ 247 (338)
T 3ijl_A 187 RQYALDMI-HWLKEKGIVMIE----Q------------PMPKEQLDDIAWVTQQS-PLPVFADESLQRLGDVAALK-GAF 247 (338)
T ss_dssp HHHHHHHH-HHHHHTTEEEEE----C------------CSCTTCHHHHHHHHHTC-SSCEEESTTCCSGGGTGGGB-TTB
T ss_pred HHHHHHHH-HHHhhCCCCEEE----C------------CCCCCcHHHHHHHHhcC-CCCEEECCCCCCHHHHHHHH-hhC
Confidence 33444443 445677877654 1 12233467777777764 89999988899998877765 457
Q ss_pred CeeE
Q 017176 231 HHVM 234 (376)
Q Consensus 231 d~Vm 234 (376)
|.|+
T Consensus 248 d~i~ 251 (338)
T 3ijl_A 248 TGIN 251 (338)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 7766
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=90.05 E-value=1.8 Score=39.70 Aligned_cols=111 Identities=14% Similarity=0.105 Sum_probs=61.6
Q ss_pred HHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccC--ccccCCCCCCCCCCCCc------
Q 017176 121 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR--KALLNGISPAENRTIPP------ 192 (376)
Q Consensus 121 ~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r--~~~~~g~~~~~~~~~~~------ 192 (376)
.+.+..+.+++.-...+..-+..|..+.+ .+.+.+ +.++++|+|.|.+--- .+...| ..+..
T Consensus 4 ri~~~f~~~~~~~~~ali~yi~aGdP~~~---~~~~~~-~~l~~~GaD~iElgiPfSDP~aDG------p~Iq~a~~~AL 73 (267)
T 3vnd_A 4 RYQAKFAALKAQDKGAFVPFVTIGDPSPE---LSLKII-QTLVDNGADALELGFPFSDPLADG------PVIQGANLRSL 73 (267)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEETTSSCHH---HHHHHH-HHHHHTTCSSEEEECCCSCCTTCC------HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEEEeCCCCCHH---HHHHHH-HHHHHcCCCEEEECCCCCCCCCCC------HHHHHHHHHHH
Confidence 34555566554434456666677765533 333333 3456799999987511 111111 11110
Q ss_pred -------ccHHHHHHHHhhCCCCeEEEecCCCC-----HH-HHHHHHHcCcCeeEEchHHhh
Q 017176 193 -------LKYEYYYALLRDFPDLTFTLNGGINT-----VD-EVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 193 -------~~~~~v~~~~~~~~~ipVi~nGgI~s-----~~-da~~~l~~Gad~VmiGRa~l~ 241 (376)
..++.+.++++..+++||+..+-.+. .+ -++++.+.|+|+|.+.---+.
T Consensus 74 ~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~e 135 (267)
T 3vnd_A 74 AAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVE 135 (267)
T ss_dssp HTTCCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGG
T ss_pred HcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHh
Confidence 11566777776646899998765332 23 345555699999999544333
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=89.86 E-value=4.8 Score=37.26 Aligned_cols=126 Identities=11% Similarity=0.043 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 152 (376)
|.+.+.+-++.+.+.|.|+|=++.. +|+ +.+| ..+.-.++++.+.+.+ .+||.+-+. . .+..
T Consensus 26 D~~~l~~lv~~li~~Gv~gl~~~Gt--------tGE-~~~L--s~~Er~~v~~~~~~~~~grvpviaGvg----~-~~t~ 89 (297)
T 3flu_A 26 HYEQLRDLIDWHIENGTDGIVAVGT--------TGE-SATL--SVEEHTAVIEAVVKHVAKRVPVIAGTG----A-NNTV 89 (297)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESST--------TTT-GGGS--CHHHHHHHHHHHHHHHTTSSCEEEECC----C-SSHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCcc--------ccC-cccC--CHHHHHHHHHHHHHHhCCCCcEEEeCC----C-cCHH
Confidence 6788899999998999999988642 344 3333 3444455555555443 478888432 2 2355
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEE-Ee-----cCCCCHHHHHHHH
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT-LN-----GGINTVDEVNAAL 226 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi-~n-----GgI~s~~da~~~l 226 (376)
+.++. ++.+++.|+|++-+..-. +...+ ...-++++.++.+.. ++||+ .| |--.+++.+.++.
T Consensus 90 ~ai~l-a~~a~~~Gadavlv~~P~--y~~~~-------~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~~~~~~~La 158 (297)
T 3flu_A 90 EAIAL-SQAAEKAGADYTLSVVPY--YNKPS-------QEGIYQHFKTIAEAT-SIPMIIYNVPGRTVVSMTNDTILRLA 158 (297)
T ss_dssp HHHHH-HHHHHHTTCSEEEEECCC--SSCCC-------HHHHHHHHHHHHHHC-CSCEEEEECHHHHSSCCCHHHHHHHT
T ss_pred HHHHH-HHHHHHcCCCEEEECCCC--CCCCC-------HHHHHHHHHHHHHhC-CCCEEEEECCchhccCCCHHHHHHHH
Confidence 56654 445678999999876421 11110 011145666666664 78876 33 4445667666554
Q ss_pred H
Q 017176 227 R 227 (376)
Q Consensus 227 ~ 227 (376)
+
T Consensus 159 ~ 159 (297)
T 3flu_A 159 E 159 (297)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >3vc5_A Mandelate racemase/muconate lactonizing protein; dehydratase, magnesium binding, enzyme function initiative, enolase, isomerase; 1.50A {Thermobispora bispora} PDB: 3vc6_A 4dhg_A | Back alignment and structure |
|---|
Probab=89.85 E-value=4.5 Score=39.75 Aligned_cols=121 Identities=12% Similarity=0.179 Sum_probs=81.5
Q ss_pred CCHHHHHHHHHHHHH-CCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccH
Q 017176 74 SNLDNLAKATELANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSY 151 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~-~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~ 151 (376)
.+|+++++.|+.+.+ .||..+-|..|. .+++.-.+.+++||+.+ +..+.|-..-+|+ .
T Consensus 187 ~~~e~~~~~a~~~~~~~Gf~~~KlKvG~----------------~~~~~Di~rv~avRea~pd~~L~vDaN~~w~----~ 246 (441)
T 3vc5_A 187 LDPDGIVAQARLLIGEYGFRSIKLKGGV----------------FPPEQEAEAIQALRDAFPGLPLRLDPNAAWT----V 246 (441)
T ss_dssp CSHHHHHHHHHHHHHHHCCSSEEEECSS----------------SCHHHHHHHHHHHHHHSTTCCEEEECTTCSC----H
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEccCC----------------CCHHHHHHHHHHHHHhCCCCcEeccCCCCCC----H
Confidence 578999988887655 599999886432 13444456778888776 4556665555564 3
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCc
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGA 230 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Ga 230 (376)
++.+++ .+.+++. +.+|. .+ .+ +++.++++.+.. ++||.+.=.+.+..++.++++ ..+
T Consensus 247 ~~Ai~~-~~~L~~~-l~~iE----eP------------~~--~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~l~~~a~ 305 (441)
T 3vc5_A 247 ETSIRV-GRALDGV-LEYLE----DP------------TP--GIDGMARVAAEV-PMPLATNMCVVTPEHLPAAVERRPI 305 (441)
T ss_dssp HHHHHH-HHHTTTT-CSEEE----CC------------SS--SHHHHHHHHTTS-SSCEEESSSCCSGGGHHHHHHHCCC
T ss_pred HHHHHH-HHHHHHH-HHHhh----cc------------CC--CHHHHHHHHhcC-CCCEEeCCCCCCHHHHHHHHHhCCC
Confidence 454544 3445556 66554 00 11 366677777654 899988878999999999998 568
Q ss_pred CeeEE
Q 017176 231 HHVMV 235 (376)
Q Consensus 231 d~Vmi 235 (376)
|.|++
T Consensus 306 dii~~ 310 (441)
T 3vc5_A 306 GVLLI 310 (441)
T ss_dssp SEEEE
T ss_pred CEEee
Confidence 88876
|
| >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=89.84 E-value=7.5 Score=35.31 Aligned_cols=137 Identities=12% Similarity=0.111 Sum_probs=85.7
Q ss_pred CEEEE-ecC-CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC
Q 017176 66 PIVLQ-IGG-SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 143 (376)
Q Consensus 66 p~~vQ-L~g-~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~ 143 (376)
+++++ .++ .+.+...+.++.++++|+|.|-...--|.... ..|-+ +. ..-.++++.+++..++|+..-+
T Consensus 24 ~~vIAgpc~~~~~e~a~~~a~~l~~~Ga~~vk~~~fkprts~---~~~~g-~~---~egl~~l~~~~~~~Gl~~~te~-- 94 (262)
T 1zco_A 24 FTIIAGPCSIESREQIMKVAEFLAEVGIKVLRGGAFKPRTSP---YSFQG-YG---EKALRWMREAADEYGLVTVTEV-- 94 (262)
T ss_dssp CEEEEECSBCCCHHHHHHHHHHHHHTTCCEEECBSSCCCSST---TSCCC-CT---HHHHHHHHHHHHHHTCEEEEEC--
T ss_pred cEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEEEecccCCCc---ccccC-cc---HHHHHHHHHHHHHcCCcEEEee--
Confidence 55444 332 26788888999999999999887654553211 11111 11 4444556666677788887632
Q ss_pred CCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCC-CHHHH
Q 017176 144 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN-TVDEV 222 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~-s~~da 222 (376)
-+..+.+ ++ .+. +|++-|-+|+.. ++.++.++.+ .+.||+..-|.. |.+++
T Consensus 95 --~d~~~~~----~l----~~~-vd~~kIga~~~~---------------n~~ll~~~a~--~~kPV~lk~G~~~t~~e~ 146 (262)
T 1zco_A 95 --MDTRHVE----LV----AKY-SDILQIGARNSQ---------------NFELLKEVGK--VENPVLLKRGMGNTIQEL 146 (262)
T ss_dssp --CCGGGHH----HH----HHH-CSEEEECGGGTT---------------CHHHHHHHTT--SSSCEEEECCTTCCHHHH
T ss_pred --CCHHhHH----HH----Hhh-CCEEEECccccc---------------CHHHHHHHHh--cCCcEEEecCCCCCHHHH
Confidence 2222222 22 245 899999988642 1455666655 389999998887 99998
Q ss_pred HHHHH----cCc-CeeEEchHH
Q 017176 223 NAALR----KGA-HHVMVGRAA 239 (376)
Q Consensus 223 ~~~l~----~Ga-d~VmiGRa~ 239 (376)
..+++ .|. +.+.+=||.
T Consensus 147 ~~Av~~i~~~Gn~~i~L~~RG~ 168 (262)
T 1zco_A 147 LYSAEYIMAQGNENVILCERGI 168 (262)
T ss_dssp HHHHHHHHTTTCCCEEEEECCB
T ss_pred HHHHHHHHHCCCCeEEEEECCC
Confidence 87775 465 555556664
|
| >1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A* | Back alignment and structure |
|---|
Probab=89.80 E-value=7.3 Score=36.27 Aligned_cols=141 Identities=11% Similarity=0.171 Sum_probs=84.9
Q ss_pred CCCCEEEEecC-CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe
Q 017176 63 EQHPIVLQIGG-SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 141 (376)
Q Consensus 63 ~~~p~~vQL~g-~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 141 (376)
...|+++.|=+ .+.+ .++.+.++||+-|.+-.+ --.++.+.+...++++...+ .++.|-.-+
T Consensus 71 ~~VPValHlDHg~~~e----~~~~ai~~GFtSVMiDgS------------~~p~eENi~~Tk~vv~~ah~-~gvsVEaEL 133 (305)
T 1rvg_A 71 ARVPVAVHLDHGSSYE----SVLRALRAGFTSVMIDKS------------HEDFETNVRETRRVVEAAHA-VGVTVEAEL 133 (305)
T ss_dssp CSSCEEEEEEEECSHH----HHHHHHHTTCSEEEECCT------------TSCHHHHHHHHHHHHHHHHH-TTCEEEEEE
T ss_pred CCCcEEEECCCCCCHH----HHHHHHHcCCCeeeeCCC------------CCCHHHHHHHHHHHHHHHHH-cCCEEEEEE
Confidence 44566666643 2332 233344567777766432 11234566777777777653 244443333
Q ss_pred c-C-CCCC----------CccHHHHHHHHHHHhhcCCccEEEEccCccc--cCCCCCCCCCCCCcccHHHHHHHHhhCCC
Q 017176 142 R-I-GVDD----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL--LNGISPAENRTIPPLKYEYYYALLRDFPD 207 (376)
Q Consensus 142 R-~-g~~~----------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~--~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ 207 (376)
- + |.++ ..+.++..+|+ ++.|+|.|.+.=++.. |+. . ..+.++++.+.++.+.. +
T Consensus 134 G~vgg~Ed~~~~~~~~~~yT~Peea~~Fv----~~TgvD~LAvaiGt~HG~Yk~---~---g~p~L~~~~L~~I~~~~-~ 202 (305)
T 1rvg_A 134 GRLAGIEEHVAVDEKDALLTNPEEARIFM----ERTGADYLAVAIGTSHGAYKG---K---GRPFIDHARLERIARLV-P 202 (305)
T ss_dssp SCCCCSCC------CCTTCCCHHHHHHHH----HHHCCSEEEECSSCCSSSBCS---S---SSCCCCHHHHHHHHHHC-C
T ss_pred eeccCccCCccccccccccCCHHHHHHHH----HHHCCCEEEEecCccccccCC---C---CCCccCHHHHHHHHHhc-C
Confidence 2 1 1121 13456666654 4679999999776642 220 0 12567899999998876 6
Q ss_pred CeEEEecCCCCHHHHHHHHH-cCcC
Q 017176 208 LTFTLNGGINTVDEVNAALR-KGAH 231 (376)
Q Consensus 208 ipVi~nGgI~s~~da~~~l~-~Gad 231 (376)
+|++.-|+=.=+++..+++. .|-+
T Consensus 203 vpLVlHGgSsv~~~~~~~~~~~gg~ 227 (305)
T 1rvg_A 203 APLVLHGASAVPPELVERFRASGGE 227 (305)
T ss_dssp SCEEECSCCCCCHHHHHHHHHTTCC
T ss_pred CCEEEeCCCCCcHHHHHHHHhhccc
Confidence 99999999988888888887 6655
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=89.73 E-value=3.8 Score=38.30 Aligned_cols=124 Identities=14% Similarity=0.080 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 152 (376)
|.+.+.+-++.+.+.|.|+|-++.. +|+ +.+| ..+.-.++++.+.+.+ .+||.+-+. . .++.
T Consensus 43 D~~~l~~lv~~li~~Gv~Gi~v~Gt--------TGE-~~~L--s~~Er~~v~~~~v~~~~grvpViaGvg----~-~~t~ 106 (315)
T 3na8_A 43 DLPALGRSIERLIDGGVHAIAPLGS--------TGE-GAYL--SDPEWDEVVDFTLKTVAHRVPTIVSVS----D-LTTA 106 (315)
T ss_dssp CHHHHHHHHHHHHHTTCSEEECSSG--------GGT-GGGS--CHHHHHHHHHHHHHHHTTSSCBEEECC----C-SSHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc--------ccC-hhhC--CHHHHHHHHHHHHHHhCCCCcEEEecC----C-CCHH
Confidence 6788999999999999999977641 344 3333 3444455555555543 478887432 2 2355
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEE-Ee-----cCCCCHHHHHHH
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT-LN-----GGINTVDEVNAA 225 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi-~n-----GgI~s~~da~~~ 225 (376)
+.++. ++.+++.|+|++.+-.-. +...+ ...-++++.++.+.. ++||+ .| |--.+++.+.++
T Consensus 107 ~ai~l-a~~A~~~Gadavlv~~P~--y~~~s-------~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~~~~~~~L 174 (315)
T 3na8_A 107 KTVRR-AQFAESLGAEAVMVLPIS--YWKLN-------EAEVFQHYRAVGEAI-GVPVMLYNNPGTSGIDMSVELILRI 174 (315)
T ss_dssp HHHHH-HHHHHHTTCSEEEECCCC--SSCCC-------HHHHHHHHHHHHHHC-SSCEEEEECHHHHSCCCCHHHHHHH
T ss_pred HHHHH-HHHHHhcCCCEEEECCCC--CCCCC-------HHHHHHHHHHHHHhC-CCcEEEEeCcchhCcCCCHHHHHHH
Confidence 66654 455678999999886421 11110 011255667777665 78886 44 445577777777
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=89.60 E-value=3.1 Score=38.57 Aligned_cols=142 Identities=9% Similarity=-0.017 Sum_probs=70.5
Q ss_pred HHHHHHCCCCEEEecCCCCCc-------cccCCC-----CccccccCC-HHHHHHHHHHHhcccCccEEEEecCCCCCCc
Q 017176 83 TELANAYNYDEINLNCGCPSP-------KVAGHG-----CFGVSLMLD-PKFVGEAMSVIAANTNVPVSVKCRIGVDDHD 149 (376)
Q Consensus 83 a~~~~~~G~d~IeiN~gcP~~-------~v~r~g-----~yG~~l~~~-~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~ 149 (376)
.+.+.+.|+..|.+-.-++.+ ...+.. .+| +.+. .+...+.++..++..+.|+.+-+.. .
T Consensus 31 ~~~~~~~G~g~v~~~~v~~~~~~gn~~pr~~~~~~~~in~~g--~~~~g~~~~~~~~~~~~~~~~~p~~~~i~g-----~ 103 (314)
T 2e6f_A 31 LRCMTASSSGALVSKSCTSAPRDGNPEPRYMAFPLGSINSMG--LPNLGFDFYLKYASDLHDYSKKPLFLSISG-----L 103 (314)
T ss_dssp HHHHHHSSCSCEECCCBCSSCBCCSCSCCEEEETTEEEECCC--CCBSCHHHHHHHHHHTCCTTTCCEEEEECC-----S
T ss_pred HHHHHHCCCCEEEeCccCCcccCCCCCCcEEecccceeecCC--CCCcCHHHHHHHHHHHhhcCCCcEEEEeCC-----C
Confidence 445678899888875433322 111110 012 1111 2333333333322246888887763 2
Q ss_pred cHHHHHHHHHHHhhcCCcc---EEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE--ecCCCCHHHH--
Q 017176 150 SYNQLCDFIYKVSSLSPTR---HFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL--NGGINTVDEV-- 222 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~~Gvd---~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~--nGgI~s~~da-- 222 (376)
+.++..+. ++.++++|+| +|.+|-......|. .....-+...++.+.++++.. ++||+. ..++ +.+++
T Consensus 104 ~~~~~~~~-a~~~~~~g~d~~~~iein~~~P~~~g~--~~~g~~~~~~~~ii~~vr~~~-~~Pv~vK~~~~~-~~~~~~~ 178 (314)
T 2e6f_A 104 SVEENVAM-VRRLAPVAQEKGVLLELNLSCPNVPGK--PQVAYDFEAMRTYLQQVSLAY-GLPFGVKMPPYF-DIAHFDT 178 (314)
T ss_dssp SHHHHHHH-HHHHHHHHHHHCCEEEEECCCCCSTTC--CCGGGSHHHHHHHHHHHHHHH-CSCEEEEECCCC-CHHHHHH
T ss_pred CHHHHHHH-HHHHHHhCCCcCceEEEEcCCCCCCCc--hhhcCCHHHHHHHHHHHHHhc-CCCEEEEECCCC-CHHHHHH
Confidence 23344443 3345568999 99998654322221 110000111244566665554 788874 3444 66663
Q ss_pred --HHHHHcC-cCeeEEc
Q 017176 223 --NAALRKG-AHHVMVG 236 (376)
Q Consensus 223 --~~~l~~G-ad~VmiG 236 (376)
..+.+.| +|+|.+-
T Consensus 179 ~a~~~~~aG~~d~i~v~ 195 (314)
T 2e6f_A 179 AAAVLNEFPLVKFVTCV 195 (314)
T ss_dssp HHHHHHTCTTEEEEEEC
T ss_pred HHHHHHhcCCceEEEEe
Confidence 3333489 9998753
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=89.50 E-value=6.1 Score=36.39 Aligned_cols=126 Identities=15% Similarity=0.065 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 152 (376)
|.+.+.+-++.+.+.|.|+|-++.. +|+ +..| ..+.-.++++.+.+.+ .+||.+-+.. .+..
T Consensus 20 D~~~l~~lv~~li~~Gv~gl~~~Gt--------tGE-~~~L--s~~Er~~v~~~~~~~~~gr~pviaGvg~-----~~t~ 83 (292)
T 2ojp_A 20 CRASLKKLIDYHVASGTSAIVSVGT--------TGE-SATL--NHDEHADVVMMTLDLADGRIPVIAGTGA-----NATA 83 (292)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESST--------TTT-GGGS--CHHHHHHHHHHHHHHHTTSSCEEEECCC-----SSHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc--------ccc-hhhC--CHHHHHHHHHHHHHHhCCCCcEEEecCC-----ccHH
Confidence 6788888899888889999988642 344 3333 3444455555555443 4788775432 2345
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE-e-----cCCCCHHHHHHHH
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-N-----GGINTVDEVNAAL 226 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~-n-----GgI~s~~da~~~l 226 (376)
+.++. ++.+++.|+|++-+-.- .+...+ ...-++++.++.+.. ++||+. | |--.+++.+.++.
T Consensus 84 ~ai~l-a~~a~~~Gadavlv~~P--~y~~~s-------~~~l~~~f~~ia~a~-~lPiilYn~P~~tg~~l~~~~~~~La 152 (292)
T 2ojp_A 84 EAISL-TQRFNDSGIVGCLTVTP--YYNRPS-------QEGLYQHFKAIAEHT-DLPQILYNVPSRTGCDLLPETVGRLA 152 (292)
T ss_dssp HHHHH-HHHTTTSSCSEEEEECC--CSSCCC-------HHHHHHHHHHHHTTC-SSCEEEECCHHHHSCCCCHHHHHHHH
T ss_pred HHHHH-HHHHHhcCCCEEEECCC--CCCCCC-------HHHHHHHHHHHHHhc-CCCEEEEeCcchhccCCCHHHHHHHH
Confidence 66654 45667899999987642 111111 011145666676654 789864 4 3345788777765
Q ss_pred H
Q 017176 227 R 227 (376)
Q Consensus 227 ~ 227 (376)
+
T Consensus 153 ~ 153 (292)
T 2ojp_A 153 K 153 (292)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=89.41 E-value=0.76 Score=42.88 Aligned_cols=67 Identities=7% Similarity=-0.001 Sum_probs=47.7
Q ss_pred HHHhhcCCccEEEEccCc----cccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCee
Q 017176 159 YKVSSLSPTRHFIIHSRK----ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV 233 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~----~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~V 233 (376)
++.++++|++.|.+--.. ...+|.. .-...+.+.++++.+ ++||++-+++...++++.+.+.|||.|
T Consensus 34 A~~ye~~GA~~lsvLe~~~~Di~~~~g~~-------R~~~~~~i~~i~~~v-~iPvl~k~~i~~ide~qil~aaGAD~I 104 (297)
T 4adt_A 34 AKIAEKAGAIGVMILENIPSELRNTDGVA-------RSVDPLKIEEIRKCI-SINVLAKVRIGHFVEAQILEELKVDML 104 (297)
T ss_dssp HHHHHHHTCSEEEECCCCC-----CCCCC-------CCCCHHHHHHHHTTC-CSEEEEEEETTCHHHHHHHHHTTCSEE
T ss_pred HHHHHHcCCCEEEEecCCCCcchhcCCcc-------cCCCHHHHHHHHHhc-CCCEEEeccCCcHHHHHHHHHcCCCEE
Confidence 566788999999876321 1112210 111378888887764 999999988888888888888999999
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=89.37 E-value=4.3 Score=37.96 Aligned_cols=127 Identities=13% Similarity=0.102 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccH
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSY 151 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~ 151 (376)
-|.+.+.+-++.+.+.|.|+|=++.. +|+ +.+| ..+.-.++++.+.+.+ .+||.+-+. . .++
T Consensus 41 iD~~~l~~lv~~li~~Gv~Gl~v~Gt--------TGE-~~~L--s~~Er~~v~~~~v~~~~grvpViaGvg----~-~st 104 (314)
T 3qze_A 41 LDWDSLAKLVDFHLQEGTNAIVAVGT--------TGE-SATL--DVEEHIQVIRRVVDQVKGRIPVIAGTG----A-NST 104 (314)
T ss_dssp BCHHHHHHHHHHHHHHTCCEEEESSG--------GGT-GGGC--CHHHHHHHHHHHHHHHTTSSCEEEECC----C-SSH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcc--------ccC-hhhC--CHHHHHHHHHHHHHHhCCCCcEEEeCC----C-cCH
Confidence 36788999999888899999988641 344 3333 3444455555555443 478887432 2 235
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE-e-----cCCCCHHHHHHH
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-N-----GGINTVDEVNAA 225 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~-n-----GgI~s~~da~~~ 225 (376)
.+.++. ++.+++.|+|++-+-.-. +...+ ...-++++.++.+.. ++||+. | |--.+++.+.++
T Consensus 105 ~eai~l-a~~A~~~Gadavlv~~P~--y~~~s-------~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~~~~~~~L 173 (314)
T 3qze_A 105 REAVAL-TEAAKSGGADACLLVTPY--YNKPT-------QEGMYQHFRHIAEAV-AIPQILYNVPGRTSCDMLPETVERL 173 (314)
T ss_dssp HHHHHH-HHHHHHTTCSEEEEECCC--SSCCC-------HHHHHHHHHHHHHHS-CSCEEEEECHHHHSCCCCHHHHHHH
T ss_pred HHHHHH-HHHHHHcCCCEEEEcCCC--CCCCC-------HHHHHHHHHHHHHhc-CCCEEEEeCccccCCCCCHHHHHHH
Confidence 566654 445678999999876421 11110 011245666676665 788864 3 555677777666
Q ss_pred HH
Q 017176 226 LR 227 (376)
Q Consensus 226 l~ 227 (376)
.+
T Consensus 174 a~ 175 (314)
T 3qze_A 174 SK 175 (314)
T ss_dssp HT
T ss_pred hc
Confidence 54
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=89.35 E-value=2.3 Score=37.82 Aligned_cols=90 Identities=13% Similarity=0.081 Sum_probs=58.5
Q ss_pred HHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHH
Q 017176 122 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL 201 (376)
Q Consensus 122 ~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~ 201 (376)
..++++.+++ .|+..=+|. .+.++..+++ .. +.+.|++.|.+.-++. ...+.+.++
T Consensus 16 ~~~~~~~l~~---~~ii~V~r~--~~~~~~~~~~---~a-l~~gGv~~iel~~k~~---------------~~~~~i~~l 71 (225)
T 1mxs_A 16 AARIDAICEK---ARILPVITI--AREEDILPLA---DA-LAAGGIRTLEVTLRSQ---------------HGLKAIQVL 71 (225)
T ss_dssp HHHHHHHHHH---HSEEEEECC--SCGGGHHHHH---HH-HHHTTCCEEEEESSST---------------HHHHHHHHH
T ss_pred HHHHHHHHHH---CCEEEEEeC--CCHHHHHHHH---HH-HHHCCCCEEEEecCCc---------------cHHHHHHHH
Confidence 4455555554 355554564 2323333333 23 3469999988864321 114567777
Q ss_pred HhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017176 202 LRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 202 ~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
+++++++ +++.|-+.+.+++..+++.|||+|..|
T Consensus 72 ~~~~~~~-~igagtvl~~d~~~~A~~aGAd~v~~p 105 (225)
T 1mxs_A 72 REQRPEL-CVGAGTVLDRSMFAAVEAAGAQFVVTP 105 (225)
T ss_dssp HHHCTTS-EEEEECCCSHHHHHHHHHHTCSSEECS
T ss_pred HHhCccc-EEeeCeEeeHHHHHHHHHCCCCEEEeC
Confidence 7777665 467777999999999999999999987
|
| >3p0w_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, protein structure initiative; HET: GKR; 1.71A {Ralstonia pickettii} PDB: 4hn8_A 3nxl_A | Back alignment and structure |
|---|
Probab=89.29 E-value=4 Score=40.44 Aligned_cols=123 Identities=15% Similarity=0.087 Sum_probs=76.3
Q ss_pred CCHHHHHHHHHHHHH-CCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccH
Q 017176 74 SNLDNLAKATELANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSY 151 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~-~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~ 151 (376)
.+++++++.|+.+.+ .||..+-+..|.+ +++.-.+.|++||+.. ++.+.|-..-+|+ .
T Consensus 199 ~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~----------------~~~~Di~rv~avRea~pd~~L~vDaN~~w~----~ 258 (470)
T 3p0w_A 199 MTPAAIARLAEAATERYGFADFKLKGGVM----------------PGAEEMEAIAAIKARFPHARVTLDPNGAWS----L 258 (470)
T ss_dssp CSHHHHHHHHHHHHHHHCCSEEEEECSSS----------------CHHHHHHHHHHHHHHCTTSEEEEECTTBBC----H
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCCC----------------CHHHHHHHHHHHHHhCCCCeEEeeCCCCCC----H
Confidence 578999988887765 6999998875532 2233356677787765 3445554444443 4
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCccc----HHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK----YEYYYALLRDFPDLTFTLNGGINTVDEVNAALR 227 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~----~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~ 227 (376)
++.+++ .+.+++. +.+|. . .+++-+ ++.++++.+.. ++||.+.=.+.+..++.++++
T Consensus 259 ~~Ai~~-~~~Le~~-l~~iE----e------------P~~~~d~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~l~ 319 (470)
T 3p0w_A 259 NEAIAL-CKGQGHL-VAYAE----D------------PCGPEAGYSGREVMAEFKRAT-GIPTATNMIATDWRQMGHAVQ 319 (470)
T ss_dssp HHHHHH-HTTCTTT-CSEEE----S------------CBCCBTTBCHHHHHHHHHHHH-CCCEEESSSSCSHHHHHHHHH
T ss_pred HHHHHH-HHhcccc-ceeec----C------------CCChhhccchHHHHHHHHhcC-CCCEEeCCccCCHHHHHHHHH
Confidence 454443 3344544 54443 0 112222 45566776654 799888666888999999998
Q ss_pred -cCcCeeEE
Q 017176 228 -KGAHHVMV 235 (376)
Q Consensus 228 -~Gad~Vmi 235 (376)
..+|.+++
T Consensus 320 ~~a~div~~ 328 (470)
T 3p0w_A 320 LHAVDIPLA 328 (470)
T ss_dssp TTCCSEEBC
T ss_pred cCCCCEEEe
Confidence 45777644
|
| >3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} | Back alignment and structure |
|---|
Probab=89.18 E-value=0.5 Score=44.44 Aligned_cols=89 Identities=10% Similarity=0.014 Sum_probs=0.0
Q ss_pred CCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEE-EecCCCCHHHHH
Q 017176 146 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFT-LNGGINTVDEVN 223 (376)
Q Consensus 146 ~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi-~nGgI~s~~da~ 223 (376)
+..-+++.+.+.+..+++ .|++.|.+-|.|......+..+. .+.+...++... ++||| +.|+ .+.+.++
T Consensus 27 dg~iD~~~l~~lv~~li~-~Gv~gl~v~GtTGE~~~Ls~eEr-------~~vi~~~~~~~~grvpViaGvg~-st~~ai~ 97 (314)
T 3d0c_A 27 TREIDWKGLDDNVEFLLQ-NGIEVIVPNGNTGEFYALTIEEA-------KQVATRVTELVNGRATVVAGIGY-SVDTAIE 97 (314)
T ss_dssp TCCBCHHHHHHHHHHHHH-TTCSEECTTSGGGTGGGSCHHHH-------HHHHHHHHHHHTTSSEEEEEECS-SHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH-cCCCEEEECcccCChhhCCHHHH-------HHHHHHHHHHhCCCCeEEecCCc-CHHHHHH
Q ss_pred HHHH---cCcCeeEEchHHhhCC
Q 017176 224 AALR---KGAHHVMVGRAAYQNP 243 (376)
Q Consensus 224 ~~l~---~Gad~VmiGRa~l~~P 243 (376)
.+.. .|||+||+-...+..|
T Consensus 98 la~~A~~~Gadavlv~~P~y~~~ 120 (314)
T 3d0c_A 98 LGKSAIDSGADCVMIHQPVHPYI 120 (314)
T ss_dssp HHHHHHHTTCSEEEECCCCCSCC
T ss_pred HHHHHHHcCCCEEEECCCCCCCC
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=89.16 E-value=4.5 Score=37.85 Aligned_cols=127 Identities=10% Similarity=0.101 Sum_probs=76.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccH
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSY 151 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~ 151 (376)
-|.+.+.+-++.+.+.|.|+|-++.. +|+ +.+| ..+.-.++++.+.+.+ .+||.+-+. . .+.
T Consensus 40 iD~~~l~~li~~li~~Gv~Gl~v~Gt--------TGE-~~~L--s~~Er~~v~~~~v~~~~grvpViaGvg----~-~st 103 (315)
T 3si9_A 40 IDEKAFCNFVEWQITQGINGVSPVGT--------TGE-SPTL--THEEHKRIIELCVEQVAKRVPVVAGAG----S-NST 103 (315)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEECSST--------TTT-GGGS--CHHHHHHHHHHHHHHHTTSSCBEEECC----C-SSH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCcc--------ccC-cccc--CHHHHHHHHHHHHHHhCCCCcEEEeCC----C-CCH
Confidence 36788999999999999999977641 344 3333 3444455555555443 478877433 2 235
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE-e-----cCCCCHHHHHHH
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-N-----GGINTVDEVNAA 225 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~-n-----GgI~s~~da~~~ 225 (376)
.+.++. ++.+++.|+|++-+-.- .|...+ ...-++++.++.+.. ++||+. | |--.+++.+.++
T Consensus 104 ~~ai~l-a~~A~~~Gadavlv~~P--~y~~~~-------~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~~~~~~~L 172 (315)
T 3si9_A 104 SEAVEL-AKHAEKAGADAVLVVTP--YYNRPN-------QRGLYTHFSSIAKAI-SIPIIIYNIPSRSVIDMAVETMRDL 172 (315)
T ss_dssp HHHHHH-HHHHHHTTCSEEEEECC--CSSCCC-------HHHHHHHHHHHHHHC-SSCEEEEECHHHHSCCCCHHHHHHH
T ss_pred HHHHHH-HHHHHhcCCCEEEECCC--CCCCCC-------HHHHHHHHHHHHHcC-CCCEEEEeCchhhCCCCCHHHHHHH
Confidence 555654 45567899999987642 111110 011245666777665 788864 3 555577777766
Q ss_pred HH
Q 017176 226 LR 227 (376)
Q Consensus 226 l~ 227 (376)
.+
T Consensus 173 a~ 174 (315)
T 3si9_A 173 CR 174 (315)
T ss_dssp HH
T ss_pred Hh
Confidence 65
|
| >3qw4_B UMP synthase; N-terminal orotidine monophosphate decarboxylase domain C-TE orotate phosphoribosyltransferase domain, transferase, LYAS; HET: U5P; 3.00A {Leishmania donovani} | Back alignment and structure |
|---|
Probab=89.16 E-value=4.3 Score=40.04 Aligned_cols=142 Identities=16% Similarity=0.166 Sum_probs=76.5
Q ss_pred CCCCEEEEec-CCCHHHHHHHHHHHH-HCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEE
Q 017176 63 EQHPIVLQIG-GSNLDNLAKATELAN-AYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 140 (376)
Q Consensus 63 ~~~p~~vQL~-g~~~~~~~~aa~~~~-~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vK 140 (376)
.+.++++=+- |--|.....+++.+. ++|+|.|.+|. |||. +.++...+..+.-|+|=
T Consensus 76 ~g~~VflDlK~~DIpnT~~~~a~~~~~~lg~d~vTvh~------------~~G~---------~~l~~~~~~~~~~v~vL 134 (453)
T 3qw4_B 76 AGIPVVLDAKRGDIADTADAYATSAFKHLNAHAITASP------------YMGS---------DSLQPFMRYPDKAVFVL 134 (453)
T ss_dssp TTSCBEEEEEECCCHHHHHHHHHHHHTTSCCSEEEECS------------TTCH---------HHHHHHHTCTTSEEEEE
T ss_pred CCCeEEEEeecCChHHHHHHHHHHHHHHcCCCEEEEcc------------cCCH---------HHHHHHHHhhCCcEEEE
Confidence 4677877764 445777777777644 59999999973 2321 22333333333345544
Q ss_pred ecCCCCC---C-------cc-HHHHHHHHHH-HhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCC
Q 017176 141 CRIGVDD---H-------DS-YNQLCDFIYK-VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDL 208 (376)
Q Consensus 141 iR~g~~~---~-------~~-~~~~~~~i~~-~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~i 208 (376)
++.+-.+ . .+ .+.+++. ++ ...++|.+.+.+.+.. -+.+..+++..++.
T Consensus 135 ~~tS~~~~~~lq~~~~~~~~~~~~V~~~-a~~~~~~~g~~GvV~gat~------------------~~e~~~ir~~~~~~ 195 (453)
T 3qw4_B 135 CKTSNKGSNDLQCLRVGDRYLYEAVAER-AEGPWNVNGNVGLVVGATD------------------PVALARVRARAPTL 195 (453)
T ss_dssp EECSSGGGGGTTTSEETTEEHHHHHHHH-HTTTTCTTSCEEEEECTTC------------------HHHHHHHHHHCSSC
T ss_pred EeCCCcchHHHHhcccCCCCHHHHHHHH-HHHHHhhcCCeEEEECCCC------------------HHHHHHHHHhCCCC
Confidence 4443221 1 12 2333332 22 3335788888775421 12234555555565
Q ss_pred eEEEec-CCCCHHHHHHHHHcCcCe------eEEchHHhhCCch
Q 017176 209 TFTLNG-GINTVDEVNAALRKGAHH------VMVGRAAYQNPWY 245 (376)
Q Consensus 209 pVi~nG-gI~s~~da~~~l~~Gad~------VmiGRa~l~~P~l 245 (376)
+++.=| |.. ..+..++++.|+|. +.+||+++.-++.
T Consensus 196 ~~l~PGig~q-g~tp~~a~~~g~d~~~~~~livvgR~I~~A~dp 238 (453)
T 3qw4_B 196 WFLVPGIGAQ-GGSLKASLDAGLRADGSGMLINVSRGLARAADP 238 (453)
T ss_dssp CEEECCSSTT-CCCHHHHHHHHCCTTSCCEEEEESHHHHSCSCH
T ss_pred eEEECCcCCC-CCCHHHHHHhcCCcccCCceEecChhhccCCCH
Confidence 655433 211 11344555567777 9999999976653
|
| >1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1 | Back alignment and structure |
|---|
Probab=89.12 E-value=4.5 Score=36.53 Aligned_cols=82 Identities=11% Similarity=0.116 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCC-----ccHH
Q 017176 78 NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH-----DSYN 152 (376)
Q Consensus 78 ~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~-----~~~~ 152 (376)
.|.+..+.+++.|||.|||+-|+=. -..+.-.++++.+++. -+.|+.-.|..+. .+..
T Consensus 86 ~~~~yl~~~k~lGf~~iEiS~G~i~--------------l~~~~~~~~I~~~~~~---G~~v~~EvG~k~~~~~~~~~~~ 148 (251)
T 1qwg_A 86 KFDEFLNECEKLGFEAVEISDGSSD--------------ISLEERNNAIKRAKDN---GFMVLTEVGKKMPDKDKQLTID 148 (251)
T ss_dssp CHHHHHHHHHHHTCCEEEECCSSSC--------------CCHHHHHHHHHHHHHT---TCEEEEEECCSSHHHHTTCCHH
T ss_pred cHHHHHHHHHHcCCCEEEECCCccc--------------CCHHHHHHHHHHHHHC---CCEEeeeccccCCcccCCCCHH
Confidence 4556667788899999999866432 1234445566655543 2445555566543 3466
Q ss_pred HHHHHHHHHhhcCCccEEEEccCcc
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKA 177 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~ 177 (376)
++++.+.+-+ ++|++.|++-+|..
T Consensus 149 ~~I~~~~~~L-eAGA~~ViiEarEs 172 (251)
T 1qwg_A 149 DRIKLINFDL-DAGADYVIIEGRES 172 (251)
T ss_dssp HHHHHHHHHH-HHTCSEEEECCTTT
T ss_pred HHHHHHHHHH-HCCCcEEEEeeecc
Confidence 6776665555 58999999999863
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=89.08 E-value=8 Score=35.87 Aligned_cols=127 Identities=8% Similarity=-0.020 Sum_probs=77.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccH
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSY 151 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~ 151 (376)
-|.+.+.+-++.+.+.|.|+|=++.. +|+ +.+| ..+.-.++++.+.+.+ .+||.+-+.- .+.
T Consensus 33 iD~~~l~~lv~~li~~Gv~gi~v~Gt--------tGE-~~~L--t~~Er~~v~~~~~~~~~grvpviaGvg~-----~~t 96 (304)
T 3l21_A 33 LDTATAARLANHLVDQGCDGLVVSGT--------TGE-SPTT--TDGEKIELLRAVLEAVGDRARVIAGAGT-----YDT 96 (304)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEEESST--------TTT-GGGS--CHHHHHHHHHHHHHHHTTTSEEEEECCC-----SCH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCcc--------ccc-hhhC--CHHHHHHHHHHHHHHhCCCCeEEEeCCC-----CCH
Confidence 36788899999999999999987642 344 3333 3444455555555544 4688875322 234
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEE-Ee-----cCCCCHHHHHHH
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT-LN-----GGINTVDEVNAA 225 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi-~n-----GgI~s~~da~~~ 225 (376)
.+.++. ++.+++.|+|++.+..-. +...+ ...-++++.++.+.. ++||+ .| |--.+++.+.++
T Consensus 97 ~~ai~l-a~~a~~~Gadavlv~~P~--y~~~s-------~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~~~~~~~L 165 (304)
T 3l21_A 97 AHSIRL-AKACAAEGAHGLLVVTPY--YSKPP-------QRGLQAHFTAVADAT-ELPMLLYDIPGRSAVPIEPDTIRAL 165 (304)
T ss_dssp HHHHHH-HHHHHHHTCSEEEEECCC--SSCCC-------HHHHHHHHHHHHTSC-SSCEEEEECHHHHSSCCCHHHHHHH
T ss_pred HHHHHH-HHHHHHcCCCEEEECCCC--CCCCC-------HHHHHHHHHHHHHhc-CCCEEEEeCccccCCCCCHHHHHHH
Confidence 555654 445678999999886421 11110 011245566666654 88886 44 556677877776
Q ss_pred HH
Q 017176 226 LR 227 (376)
Q Consensus 226 l~ 227 (376)
.+
T Consensus 166 a~ 167 (304)
T 3l21_A 166 AS 167 (304)
T ss_dssp HT
T ss_pred hc
Confidence 64
|
| >3mzn_A Glucarate dehydratase; lyase, structural genomics, protein structure initiative, PS nysgrc; 1.85A {Chromohalobacter salexigens} PDB: 3nfu_A | Back alignment and structure |
|---|
Probab=88.97 E-value=5.6 Score=39.13 Aligned_cols=123 Identities=7% Similarity=0.024 Sum_probs=76.8
Q ss_pred CCHHHHHHHHHHHHH-CCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccH
Q 017176 74 SNLDNLAKATELANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSY 151 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~-~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~ 151 (376)
.+|+++++.|+.+.+ .||..+-+..|.+ +++.-.+.|++||+.. +..+.|-..-+|+ .
T Consensus 181 ~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~----------------~~~~Di~~v~avRea~pd~~L~vDaN~~w~----~ 240 (450)
T 3mzn_A 181 MTPEAVANLARAAYDRYGFKDFKLKGGVL----------------RGEEEADCIRALHEAFPEARLALDPNGAWK----L 240 (450)
T ss_dssp CSHHHHHHHHHHHHHHHCCSEEEEECSSS----------------CHHHHHHHHHHHHHHCTTSEEEEECTTCBC----H
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEECCCCC----------------CHHHHHHHHHHHHHhCCCCeEEEECCCCCC----H
Confidence 478999988887665 6999998865432 2333456677887765 3445554444553 4
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCccc----HHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK----YEYYYALLRDFPDLTFTLNGGINTVDEVNAALR 227 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~----~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~ 227 (376)
.+.+++ .+.+++. +.+|. . .+++-+ ++.++++.+.. ++||.+.=.+.+..++.++++
T Consensus 241 ~~A~~~-~~~L~~~-i~~iE----e------------P~~~~d~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~ 301 (450)
T 3mzn_A 241 DEAVRV-LEPIKHL-LSYAE----D------------PCGQEGGFSGRETMAEFKKRT-GLPTATNMIATDYKQLQYAVQ 301 (450)
T ss_dssp HHHHHH-HGGGGGG-CSEEE----S------------SBCCBTTBCHHHHHHHHHHHH-CCCEEESSSSSSHHHHHHHHH
T ss_pred HHHHHH-HHHhhhc-cceee----C------------CCCcccccchHHHHHHHHHhc-CCCEEeCCccCCHHHHHHHHH
Confidence 454544 3445555 55543 1 111212 45566776654 799888656788999999998
Q ss_pred -cCcCeeEE
Q 017176 228 -KGAHHVMV 235 (376)
Q Consensus 228 -~Gad~Vmi 235 (376)
..+|.+++
T Consensus 302 ~~a~di~~~ 310 (450)
T 3mzn_A 302 LNSVDIPLA 310 (450)
T ss_dssp HTCCSEEBC
T ss_pred cCCCCEEEe
Confidence 45787654
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=88.84 E-value=0.97 Score=41.93 Aligned_cols=88 Identities=13% Similarity=0.046 Sum_probs=50.7
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEE-EecCCCCHHHHHHHH-
Q 017176 150 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFT-LNGGINTVDEVNAAL- 226 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi-~nGgI~s~~da~~~l- 226 (376)
+++.+.+.+..++++.|++.|.+.|.|......+..+ +.+.+...++.. .++||| +.|+..+.+.++.+.
T Consensus 22 D~~~l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~E-------r~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~ 94 (293)
T 1f6k_A 22 NEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEE-------KKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKY 94 (293)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHH-------HHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCCcEEEeCccccchhhCCHHH-------HHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHH
Confidence 3444444444444328999999988765432222111 123333333332 368987 456655555544333
Q ss_pred --HcCcCeeEEchHHhhCCc
Q 017176 227 --RKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 227 --~~Gad~VmiGRa~l~~P~ 244 (376)
+.|||+||+-...+..|.
T Consensus 95 a~~~Gadavlv~~P~y~~~~ 114 (293)
T 1f6k_A 95 ATELGYDCLSAVTPFYYKFS 114 (293)
T ss_dssp HHHHTCSEEEEECCCSSCCC
T ss_pred HHhcCCCEEEECCCCCCCCC
Confidence 279999999988876664
|
| >1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A* | Back alignment and structure |
|---|
Probab=88.67 E-value=8.4 Score=36.59 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=38.7
Q ss_pred ccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCC-CHHHHHHHHH----cCcCeeEEc-hHH
Q 017176 167 TRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN-TVDEVNAALR----KGAHHVMVG-RAA 239 (376)
Q Consensus 167 vd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~-s~~da~~~l~----~Gad~VmiG-Ra~ 239 (376)
+|++.|-+|+.. ++.++.++.+ .+.||+..-|.. |.+++..+.+ .|.+-|.+. ||.
T Consensus 190 vd~lkIgAr~~~---------------n~~LL~~va~--~~kPVilk~G~~~tl~ei~~Ave~i~~~GN~~viLceRG~ 251 (350)
T 1vr6_A 190 ADIIQIGARNAQ---------------NFRLLSKAGS--YNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGI 251 (350)
T ss_dssp CSEEEECGGGTT---------------CHHHHHHHHT--TCSCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCB
T ss_pred CCEEEECccccc---------------CHHHHHHHHc--cCCcEEEcCCCCCCHHHHHHHHHHHHHCCCCeEEEEeCCC
Confidence 677777666531 1566777764 389999999997 8888776654 577656665 665
|
| >3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=88.62 E-value=1.4 Score=41.42 Aligned_cols=62 Identities=11% Similarity=0.032 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCc----cccccCCHHHHHHHHHHHhcccCccEEEE
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCF----GVSLMLDPKFVGEAMSVIAANTNVPVSVK 140 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~y----G~~l~~~~~~~~eiv~~v~~~~~~pv~vK 140 (376)
.+++...+-|+...+.|+|.|||++-+-. .|.- .-+.....+.+..+|+++++.+++|++|-
T Consensus 46 ~~~~~al~~A~~~v~~GAdIIDIGgeSTr-----Pga~~~~~~V~~~eE~~Rv~pvI~~l~~~~~vpISID 111 (314)
T 3tr9_A 46 LDLNSALRTAEKMVDEGADILDIGGEATN-----PFVDIKTDSPSTQIELDRLLPVIDAIKKRFPQLISVD 111 (314)
T ss_dssp CSHHHHHHHHHHHHHTTCSEEEEECCCSC-----TTC-----CHHHHHHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCC-----CCcccccCCCCHHHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 35777777788888889999999863222 1110 11123345567788888888778999884
|
| >3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A* | Back alignment and structure |
|---|
Probab=88.60 E-value=3.3 Score=38.68 Aligned_cols=141 Identities=13% Similarity=0.241 Sum_probs=84.0
Q ss_pred CCCCEEEEecC-CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe
Q 017176 63 EQHPIVLQIGG-SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 141 (376)
Q Consensus 63 ~~~p~~vQL~g-~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 141 (376)
...|++++|=+ .+.+. ++.+.++||+-|.+-.+. -.++.+.+...++++...+ .++.|-.-+
T Consensus 73 ~~VPValHLDHg~~~e~----~~~ai~~GFtSVMiDgS~------------~p~eeNi~~Tk~vv~~ah~-~gvsVEaEL 135 (307)
T 3n9r_A 73 PHIPVALHLDHGTTFES----CEKAVKAGFTSVMIDASH------------HAFEENLELTSKVVKMAHN-AGVSVEAEL 135 (307)
T ss_dssp TTSCEEEEEEEECSHHH----HHHHHHHTCSEEEECCTT------------SCHHHHHHHHHHHHHHHHH-TTCEEEEEE
T ss_pred CCCcEEEECCCCCCHHH----HHHHHHhCCCcEEEECCC------------CCHHHHHHHHHHHHHHHHH-cCCeEEEEe
Confidence 35677777643 34332 233445677777774321 1234566777777777654 244443332
Q ss_pred c-C-CCCC----------CccHHHHHHHHHHHhhcCCccEEEEccCccc--cCCCCCCCCCCCCcccHHHHHHHHhhCCC
Q 017176 142 R-I-GVDD----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL--LNGISPAENRTIPPLKYEYYYALLRDFPD 207 (376)
Q Consensus 142 R-~-g~~~----------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~--~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ 207 (376)
- + |.++ ..+.++..+|+ ++.|+|.|.+.=++.. |++. .-+.++++.+.++.+ .++
T Consensus 136 G~igG~Ed~~~~~~~~~~yT~Peea~~Fv----~~TgvD~LAvaiGt~HG~Yk~~------~~p~Ld~~~L~~I~~-~~~ 204 (307)
T 3n9r_A 136 GRLMGIEDNISVDEKDAVLVNPKEAEQFV----KESQVDYLAPAIGTSHGAFKFK------GEPKLDFERLQEVKR-LTN 204 (307)
T ss_dssp SCCCCC----------CCSCCHHHHHHHH----HHHCCSEEEECSSCCSSSBCCS------SSCCCCHHHHHHHHH-HHC
T ss_pred eeeccccCCcccccccccCCCHHHHHHHH----HHHCCCEEEEecCCcccccCCC------CCCccCHHHHHHHHh-cCC
Confidence 1 1 2111 13456666654 3689999998766642 2211 114677888888854 458
Q ss_pred CeEEEecCCCCHHHHHHHHH-cCcC
Q 017176 208 LTFTLNGGINTVDEVNAALR-KGAH 231 (376)
Q Consensus 208 ipVi~nGgI~s~~da~~~l~-~Gad 231 (376)
+|++.-|+=.-+++..+.+. .|-+
T Consensus 205 ~PLVlHGgS~vp~~~~~~~~~~gg~ 229 (307)
T 3n9r_A 205 IPLVLHGASAIPDNVRKSYLDAGGD 229 (307)
T ss_dssp SCEEESSCCCCCHHHHHHHHHTTCC
T ss_pred CCeEEeCCCCcchHHHHHHHHhcCc
Confidence 99999999988888888887 6654
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=88.26 E-value=3.2 Score=36.61 Aligned_cols=93 Identities=12% Similarity=0.118 Sum_probs=59.4
Q ss_pred HHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhh
Q 017176 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD 204 (376)
Q Consensus 125 iv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 204 (376)
+++.+++ .|+..=+|. .+.++..+++ .. +.+.|++.|.+.-++. ...+.+.+++++
T Consensus 9 ~~~~l~~---~~~i~v~r~--~~~~~~~~~~---~a-l~~gGv~~iel~~k~~---------------~~~~~i~~l~~~ 64 (214)
T 1wbh_A 9 AESILTT---GPVVPVIVV--KKLEHAVPMA---KA-LVAGGVRVLNVTLRTE---------------CAVDAIRAIAKE 64 (214)
T ss_dssp HHHHHHS---CSEEEEECC--SSGGGHHHHH---HH-HHHTTCCEEEEESCST---------------THHHHHHHHHHH
T ss_pred HHHHHHH---CCEEEEEEC--CCHHHHHHHH---HH-HHHcCCCEEEEeCCCh---------------hHHHHHHHHHHH
Confidence 3444443 355555565 2223333333 33 3469999988864331 114567778787
Q ss_pred CCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 205 FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 205 ~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
++++ +++.|-+.+.+++..+++.|||+|..|- .|+.+
T Consensus 65 ~~~~-~vgagtvi~~d~~~~A~~aGAd~v~~p~---~d~~v 101 (214)
T 1wbh_A 65 VPEA-IVGAGTVLNPQQLAEVTEAGAQFAISPG---LTEPL 101 (214)
T ss_dssp CTTS-EEEEESCCSHHHHHHHHHHTCSCEEESS---CCHHH
T ss_pred CcCC-EEeeCEEEEHHHHHHHHHcCCCEEEcCC---CCHHH
Confidence 7654 5677789999999999999999999883 35544
|
| >4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A* | Back alignment and structure |
|---|
Probab=88.06 E-value=2.7 Score=38.52 Aligned_cols=83 Identities=13% Similarity=0.030 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 154 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~ 154 (376)
+++...+.|+.+.+.|+|.|||..-+- |.|.---+.....+.+.-+++++++ .++|++|-++- .++
T Consensus 28 ~~~~a~~~a~~m~~~GAdiIDIGgeST-----RPga~~vs~eeE~~Rv~pvi~~l~~-~~v~iSIDT~~--------~~V 93 (270)
T 4hb7_A 28 NVETAINRVKAMIDEGADIIDVGGVST-----RPGHEMVTLEEELNRVLPVVEAIVG-FDVKISVDTFR--------SEV 93 (270)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEESCCC-----STTCCCCCHHHHHHHHHHHHHHHTT-SSSEEEEECSC--------HHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCccC-----CCCCCCCchHHHHHHHHHHHHHhhc-CCCeEEEECCC--------HHH
Confidence 456666666777778999999975322 2221112233455677788888875 57888885332 123
Q ss_pred HHHHHHHhhcCCccEEE-EccC
Q 017176 155 CDFIYKVSSLSPTRHFI-IHSR 175 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~-vh~r 175 (376)
++ .+-++|++.|. |+++
T Consensus 94 a~----~al~aGa~iINDVs~g 111 (270)
T 4hb7_A 94 AE----ACLKLGVDMINDQWAG 111 (270)
T ss_dssp HH----HHHHHTCCEEEETTTT
T ss_pred HH----HHHHhccceecccccc
Confidence 22 22257888776 4443
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=87.91 E-value=5.5 Score=36.79 Aligned_cols=143 Identities=8% Similarity=-0.130 Sum_probs=70.8
Q ss_pred HHHHHHHHCCCCEEEecCCCCCcc-------ccCCC-----CccccccCC-HHHHHHHHHHHhccc--CccEEEEecCCC
Q 017176 81 KATELANAYNYDEINLNCGCPSPK-------VAGHG-----CFGVSLMLD-PKFVGEAMSVIAANT--NVPVSVKCRIGV 145 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~-------v~r~g-----~yG~~l~~~-~~~~~eiv~~v~~~~--~~pv~vKiR~g~ 145 (376)
+..+.+.+.|+.+|.+-.-++.+. ..+.. .+| +.+. .+.+.+.++..++.. +.|+.+-+..
T Consensus 27 ~~~~~~~~~G~g~i~~~~v~~~~~~gn~~pr~~~~~~~~in~~g--~~~~g~~~~~~~~~~~~~~~~~~~p~~~~i~g-- 102 (311)
T 1jub_A 27 EDLEELKASQAGAYITKSSTLEKREGNPLPRYVDLELGSINSMG--LPNLGFDYYLDYVLKNQKENAQEGPIFFSIAG-- 102 (311)
T ss_dssp HHHHHHHHSSCSCCBCCCBCSSCBCCSCSCCEEEETTEEEECCC--CCBSCHHHHHHHHHHHHHHTCSSSCCEEEECC--
T ss_pred HHHHHHHHCCCCEEEeCccCCcccCCCCCCcEEecccceeecCC--CCCccHHHHHHHHHHHHHhcCCCCCEEEEcCC--
Confidence 334556778888887655443321 11100 012 1111 344444444443334 6788776652
Q ss_pred CCCccHHHHHHHHHHHhhcCCcc-EEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE--ecCCCCHHHH
Q 017176 146 DDHDSYNQLCDFIYKVSSLSPTR-HFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL--NGGINTVDEV 222 (376)
Q Consensus 146 ~~~~~~~~~~~~i~~~~e~~Gvd-~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~--nGgI~s~~da 222 (376)
.+.++..+. ++.++++|+| +|.+|-..+...|. .....-+...++.+.++++. .++||+. +.++ +.+++
T Consensus 103 ---~~~~~~~~~-a~~~~~~g~d~~iein~~~P~~~g~--~~~g~~~e~~~~iv~~vr~~-~~~Pv~vKi~~~~-~~~~~ 174 (311)
T 1jub_A 103 ---MSAAENIAM-LKKIQESDFSGITELNLSCPNVPGE--PQLAYDFEATEKLLKEVFTF-FTKPLGVKLPPYF-DLVHF 174 (311)
T ss_dssp ---SSHHHHHHH-HHHHHHSCCCSEEEEESCCCCSSSC--CCGGGCHHHHHHHHHHHTTT-CCSCEEEEECCCC-SHHHH
T ss_pred ---CCHHHHHHH-HHHHHhcCCCeEEEEeccCCCCCCc--ccccCCHHHHHHHHHHHHHh-cCCCEEEEECCCC-CHHHH
Confidence 223344443 3445679999 99998654322221 11000011113445555444 4789875 4554 55554
Q ss_pred H---HHHH-cCcCeeEE
Q 017176 223 N---AALR-KGAHHVMV 235 (376)
Q Consensus 223 ~---~~l~-~Gad~Vmi 235 (376)
. +.++ .|+|+|.+
T Consensus 175 ~~~a~~~~~~G~d~i~v 191 (311)
T 1jub_A 175 DIMAEILNQFPLTYVNS 191 (311)
T ss_dssp HHHHHHHTTSCCCEEEE
T ss_pred HHHHHHHHHcCCcEEEe
Confidence 3 3333 79999876
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=87.82 E-value=2.2 Score=40.86 Aligned_cols=42 Identities=17% Similarity=0.287 Sum_probs=35.6
Q ss_pred cccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEE
Q 017176 192 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 235 (376)
Q Consensus 192 ~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vmi 235 (376)
...|+.+..+++.. ++||+.-| |.+++++..+.+.|+|+|.+
T Consensus 215 ~~~~~~i~~lr~~~-~~PvivK~-v~~~e~a~~a~~~Gad~I~v 256 (368)
T 2nli_A 215 KISPRDIEEIAGHS-GLPVFVKG-IQHPEDADMAIKRGASGIWV 256 (368)
T ss_dssp BCCHHHHHHHHHHS-SSCEEEEE-ECSHHHHHHHHHTTCSEEEE
T ss_pred hhhHHHHHHHHHHc-CCCEEEEc-CCCHHHHHHHHHcCCCEEEE
Confidence 45688888888765 89998764 68999999999999999998
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=87.79 E-value=1.6 Score=40.78 Aligned_cols=87 Identities=16% Similarity=0.084 Sum_probs=50.7
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEE-EecCCCCHHHHHHHH-
Q 017176 150 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFT-LNGGINTVDEVNAAL- 226 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi-~nGgI~s~~da~~~l- 226 (376)
+++.+.+.+..++ +.|++.|.+.|.|......+.. -+.+.+...++.. .++||| +.|+..+.+.++.+.
T Consensus 35 D~~~l~~lv~~li-~~Gv~gl~v~GttGE~~~Ls~~-------Er~~v~~~~~~~~~grvpviaGvg~~st~~ai~la~~ 106 (304)
T 3cpr_A 35 DIAAGREVAAYLV-DKGLDSLVLAGTTGESPTTTAA-------EKLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEA 106 (304)
T ss_dssp CHHHHHHHHHHHH-HTTCCEEEESSTTTTTTTSCHH-------HHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HcCCCEEEECccccChhhCCHH-------HHHHHHHHHHHHhCCCCcEEecCCCCCHHHHHHHHHH
Confidence 3444444444443 5899999999877543222211 1123333334332 268987 556665555544333
Q ss_pred --HcCcCeeEEchHHhhCCc
Q 017176 227 --RKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 227 --~~Gad~VmiGRa~l~~P~ 244 (376)
+.|||+||+-...+..|.
T Consensus 107 A~~~Gadavlv~~P~y~~~~ 126 (304)
T 3cpr_A 107 AASAGADGLLVVTPYYSKPS 126 (304)
T ss_dssp HHHTTCSEEEEECCCSSCCC
T ss_pred HHhcCCCEEEECCCCCCCCC
Confidence 379999999988776664
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=87.68 E-value=17 Score=33.54 Aligned_cols=152 Identities=15% Similarity=0.100 Sum_probs=92.0
Q ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe
Q 017176 62 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 141 (376)
Q Consensus 62 ~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 141 (376)
....|+++++.+++.++-.+.++.++++|+|++-+- .|.-. + ...+-+.+-.++|.+++++|+.+--
T Consensus 83 ~grvpviaGvg~~st~~ai~la~~A~~~Gadavlv~--~P~y~--~---------~~~~~l~~~f~~ia~a~~lPiilYn 149 (304)
T 3cpr_A 83 GDRAKLIAGVGTNNTRTSVELAEAAASAGADGLLVV--TPYYS--K---------PSQEGLLAHFGAIAAATEVPICLYD 149 (304)
T ss_dssp TTTSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEE--CCCSS--C---------CCHHHHHHHHHHHHHHCCSCEEEEE
T ss_pred CCCCcEEecCCCCCHHHHHHHHHHHHhcCCCEEEEC--CCCCC--C---------CCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 456799999999999999999999999999999885 35421 1 1346677788888888889998754
Q ss_pred ---cCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCC
Q 017176 142 ---RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 218 (376)
Q Consensus 142 ---R~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s 218 (376)
|.|.+- +.+ + +.++++.-.+-.|--..+ +...+.++++.. +..| .+|+=
T Consensus 150 ~P~~tg~~l--~~~-~---~~~La~~pnIvgiKdssg------------------d~~~~~~~~~~~-~f~v-~~G~d-- 201 (304)
T 3cpr_A 150 IPGRSGIPI--ESD-T---MRRLSELPTILAVXDAKG------------------DLVAATSLIKET-GLAW-YSGDD-- 201 (304)
T ss_dssp CHHHHSSCC--CHH-H---HHHHTTSTTEEEEEECSC------------------CHHHHHHHHHHH-CCEE-EECSG--
T ss_pred CccccCcCC--CHH-H---HHHHHcCCCEEEEecCCC------------------CHHHHHHHHHhc-CEEE-EECcH--
Confidence 334332 222 2 233332222333322211 134444544433 4433 55542
Q ss_pred HHHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhC
Q 017176 219 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256 (376)
Q Consensus 219 ~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 256 (376)
+.+...+..|++|+..+.+-+ -|..+.+.++....|
T Consensus 202 -~~~l~~l~~G~~G~is~~an~-~P~~~~~l~~a~~~G 237 (304)
T 3cpr_A 202 -PLNLVWLALGGSGFISVIGHA-APTALRELYTSFEEG 237 (304)
T ss_dssp -GGHHHHHHTTCCEEEESGGGT-CHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHCCCCEEEecHHHh-hHHHHHHHHHHHHCC
Confidence 234556678999999988764 566654444433345
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=87.68 E-value=18 Score=33.67 Aligned_cols=153 Identities=13% Similarity=0.076 Sum_probs=94.6
Q ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe
Q 017176 62 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 141 (376)
Q Consensus 62 ~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 141 (376)
....|+++...+++.++-.+.++.++++|+|++-+- .|.-. + -..+-+.+-.++|.+++++||.+--
T Consensus 90 ~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~--~P~y~--~---------~s~~~l~~~f~~va~a~~lPiilYn 156 (314)
T 3qze_A 90 KGRIPVIAGTGANSTREAVALTEAAKSGGADACLLV--TPYYN--K---------PTQEGMYQHFRHIAEAVAIPQILYN 156 (314)
T ss_dssp TTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEE--CCCSS--C---------CCHHHHHHHHHHHHHHSCSCEEEEE
T ss_pred CCCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEEc--CCCCC--C---------CCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 456799999999999999999999999999999884 45421 1 1346677888888888899998864
Q ss_pred c---CCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCCC
Q 017176 142 R---IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGIN 217 (376)
Q Consensus 142 R---~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI~ 217 (376)
- .|.+- +.+ + +.++++--.+-.|--..+ ++..+.++++..+ +.. +.+|+=
T Consensus 157 ~P~~tg~~l--~~~-~---~~~La~~pnIvgiKdssg------------------d~~~~~~~~~~~~~~f~-v~~G~d- 210 (314)
T 3qze_A 157 VPGRTSCDM--LPE-T---VERLSKVPNIIGIKEATG------------------DLQRAKEVIERVGKDFL-VYSGDD- 210 (314)
T ss_dssp CHHHHSCCC--CHH-H---HHHHHTSTTEEEEEECSC------------------CHHHHHHHHHHSCTTSE-EEESCG-
T ss_pred CccccCCCC--CHH-H---HHHHhcCCCEEEEEcCCC------------------CHHHHHHHHHHcCCCeE-EEecCh-
Confidence 2 23332 222 2 233333223333332211 1445556655543 344 456652
Q ss_pred CHHHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhC
Q 017176 218 TVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256 (376)
Q Consensus 218 s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 256 (376)
+.+...+..|++|++.+.+-+ -|..+.+.++....|
T Consensus 211 --~~~l~~l~~Ga~G~is~~an~-~P~~~~~l~~a~~~G 246 (314)
T 3qze_A 211 --ATAVELMLLGGKGNISVTANV-APRAMSDLCAAAMRG 246 (314)
T ss_dssp --GGHHHHHHTTCCEEEESGGGT-CHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHCCCCEEEecHHhh-hHHHHHHHHHHHHCC
Confidence 225566778999999887754 466654444443345
|
| >3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=87.66 E-value=0.91 Score=41.42 Aligned_cols=147 Identities=18% Similarity=0.154 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHCCCCEEEecCC--------------------------------------------C--CCccccC-CCC
Q 017176 78 NLAKATELANAYNYDEINLNCG--------------------------------------------C--PSPKVAG-HGC 110 (376)
Q Consensus 78 ~~~~aa~~~~~~G~d~IeiN~g--------------------------------------------c--P~~~v~r-~g~ 110 (376)
+.+++|..++++|+|+|-+|.- | |-..-.. +++
T Consensus 54 Dpv~aA~~ae~aGAdGITvHlReDrRHI~d~Dv~~L~~~i~t~lNlEma~t~emi~ial~~kP~~vtLVPEkreE~TTeg 133 (278)
T 3gk0_A 54 DPVRAALAAEDAGADAITLHLREDRRHIVDADVRTLRPRVKTRMNLECAVTPEMLDIACEIRPHDACLVPEKRSELTTEG 133 (278)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCTTCSSSCHHHHHHHHHHCSSCEEEEECSSHHHHHHHHHHCCSEEEECCCSGGGBCSSS
T ss_pred CHHHHHHHHHHcCCCEEEeccCCCcccCCHHHHHHHHHHcCCCEEeecCCCHHHHHHHHHcCCCEEEECCCCCCCcCCCc
Confidence 4578999999999999999753 1 2111111 333
Q ss_pred ccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCC
Q 017176 111 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190 (376)
Q Consensus 111 yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~ 190 (376)
|-....+.+.+.++++.+++ .++.|++-+-+ +.+. ++ .+.+.|+|.|.+|.+.-.... ...+
T Consensus 134 -GlDv~~~~~~L~~~i~~L~~-~GIrVSLFIDp------d~~q-I~----aA~~~GAd~IELhTG~YA~a~-~~~~---- 195 (278)
T 3gk0_A 134 -GLDVVGHFDAVRAACKQLAD-AGVRVSLFIDP------DEAQ-IR----AAHETGAPVIELHTGRYADAH-DAAE---- 195 (278)
T ss_dssp -SBCTTTTHHHHHHHHHHHHH-TTCEEEEEECS------CHHH-HH----HHHHHTCSEEEECCHHHHTCS-SHHH----
T ss_pred -chhhhccHHHHHHHHHHHHH-CCCEEEEEeCC------CHHH-HH----HHHHhCcCEEEEecchhhccC-Cchh----
Confidence 66678899999999999876 47777775532 1222 22 223689999999976321000 0000
Q ss_pred CcccHHHHH---HHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHhhCCc
Q 017176 191 PPLKYEYYY---ALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 191 ~~~~~~~v~---~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~ 244 (376)
...-++.+. +...+. ++-|=+--|+ +.+.+..+.+ .+..=|-||.+++.+--
T Consensus 196 ~~~el~rl~~aA~~A~~l-GL~VnAGHGL-~y~Nv~~ia~ip~i~ElnIGHaiIa~Al 251 (278)
T 3gk0_A 196 QQREFERIATGVDAGIAL-GLKVNAGHGL-HYTNVQAIAALPGIAELNIGHAIVAHAV 251 (278)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCEEEECTTC-CTTTHHHHHTCTTEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc-CCEEecCCCC-CHHHHHHHHhCCCCeEEecCHHHHHHHH
Confidence 000022222 222232 6767666666 4555554444 67888999999887653
|
| >1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6 | Back alignment and structure |
|---|
Probab=87.58 E-value=12 Score=36.08 Aligned_cols=140 Identities=13% Similarity=0.115 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccC-------CCCccccc-------cCCHHHHHHHHHHHhcccCccEEEE
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAG-------HGCFGVSL-------MLDPKFVGEAMSVIAANTNVPVSVK 140 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r-------~g~yG~~l-------~~~~~~~~eiv~~v~~~~~~pv~vK 140 (376)
+.+...+.++.++++|+|+|-...-.|-..+.. .+.+|..+ .-..+.. +.+.+.++..++++..-
T Consensus 42 sle~A~~li~~Ak~aGAdavKfQ~~k~~tl~s~~~~~fq~~~~~~~~~ye~~~~~~l~~e~~-~~L~~~~~~~Gi~~~st 120 (385)
T 1vli_A 42 KLDQAFALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAEWI-LPLLDYCREKQVIFLST 120 (385)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSCGGGH-HHHHHHHHHTTCEEECB
T ss_pred cHHHHHHHHHHHHHhCCCEEeeeeeccCcccCcchhhhccCCCCCccHHHHHHhcCCCHHHH-HHHHHHHHHcCCcEEEc
Confidence 567777778888899999999976555331111 11122211 1122233 34444455567776431
Q ss_pred ecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHH
Q 017176 141 CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVD 220 (376)
Q Consensus 141 iR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~ 220 (376)
-||. +.+++ +++.|++.+-|..|.-. ++.++.++.+. +.|||..-|..|.+
T Consensus 121 ---pfD~-----~svd~----l~~~~vd~~KIgS~~~~---------------N~pLL~~va~~--gKPViLStGmaTl~ 171 (385)
T 1vli_A 121 ---VCDE-----GSADL----LQSTSPSAFKIASYEIN---------------HLPLLKYVARL--NRPMIFSTAGAEIS 171 (385)
T ss_dssp ---CCSH-----HHHHH----HHTTCCSCEEECGGGTT---------------CHHHHHHHHTT--CSCEEEECTTCCHH
T ss_pred ---cCCH-----HHHHH----HHhcCCCEEEECccccc---------------CHHHHHHHHhc--CCeEEEECCCCCHH
Confidence 1221 12222 34689999999877531 27778777763 89999999999999
Q ss_pred HHHHHHH----cCcCeeEEchHHhhCCc
Q 017176 221 EVNAALR----KGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 221 da~~~l~----~Gad~VmiGRa~l~~P~ 244 (376)
++..+++ .|++-|.+--+.-.-|.
T Consensus 172 Ei~~Ave~i~~~Gn~~iiLlhc~s~YPt 199 (385)
T 1vli_A 172 DVHEAWRTIRAEGNNQIAIMHCVAKYPA 199 (385)
T ss_dssp HHHHHHHHHHTTTCCCEEEEEECSSSSC
T ss_pred HHHHHHHHHHHCCCCcEEEEeccCCCCC
Confidence 9887765 57755555333333343
|
| >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=87.43 E-value=2.1 Score=40.06 Aligned_cols=82 Identities=7% Similarity=-0.061 Sum_probs=47.8
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE-ecCCCCHHHHHHHH--
Q 017176 150 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-NGGINTVDEVNAAL-- 226 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~-nGgI~s~~da~~~l-- 226 (376)
+++.+.+.+..++ +.|++.|.+-|.|......+.. -+.+.+..+++...++|||+ .|+..+.+.++.+.
T Consensus 27 D~~~l~~lv~~li-~~Gv~Gl~v~GtTGE~~~Lt~~-------Er~~v~~~~v~~~grvpViaGvg~~~t~~ai~la~~A 98 (313)
T 3dz1_A 27 DDVSIDRLTDFYA-EVGCEGVTVLGILGEAPKLDAA-------EAEAVATRFIKRAKSMQVIVGVSAPGFAAMRRLARLS 98 (313)
T ss_dssp CHHHHHHHHHHHH-HTTCSEEEESTGGGTGGGSCHH-------HHHHHHHHHHHHCTTSEEEEECCCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HCCCCEEEeCccCcChhhCCHH-------HHHHHHHHHHHHcCCCcEEEecCCCCHHHHHHHHHHH
Confidence 3444444444443 6899999998876543222211 11334444455444799985 45555555444332
Q ss_pred -HcCcCeeEEchHH
Q 017176 227 -RKGAHHVMVGRAA 239 (376)
Q Consensus 227 -~~Gad~VmiGRa~ 239 (376)
+.|||+||+-...
T Consensus 99 ~~~Gadavlv~~P~ 112 (313)
T 3dz1_A 99 MDAGAAGVMIAPPP 112 (313)
T ss_dssp HHHTCSEEEECCCT
T ss_pred HHcCCCEEEECCCC
Confidence 3799999997665
|
| >1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A | Back alignment and structure |
|---|
Probab=87.39 E-value=1.5 Score=40.55 Aligned_cols=61 Identities=21% Similarity=0.121 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEE
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 140 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vK 140 (376)
+++...+.|+...+.|+|.||||+-+. |.|.---+.....+.+..+++++++.+++|++|-
T Consensus 36 ~~~~a~~~a~~~v~~GAdiIDIGgest-----rPga~~v~~~eE~~rv~pvi~~l~~~~~~piSID 96 (282)
T 1aj0_A 36 SLIDAVKHANLMINAGATIIDVGGEST-----RPGAAEVSVEEELQRVIPVVEAIAQRFEVWISVD 96 (282)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEESSCC-----STTCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcC-----CCCCCcCCHHHHHHHHHHHHHHHHhhcCCeEEEe
Confidence 467777777777788999999997332 1111011223456778888888888778899884
|
| >3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=87.31 E-value=6.7 Score=36.25 Aligned_cols=112 Identities=13% Similarity=0.168 Sum_probs=73.8
Q ss_pred ccCCHHHHHHHHHHHhcccCccEEEEec-C-CCCC--------CccHHHHHHHHHHHhhcCCccEEEEccCccc--cCCC
Q 017176 115 LMLDPKFVGEAMSVIAANTNVPVSVKCR-I-GVDD--------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL--LNGI 182 (376)
Q Consensus 115 l~~~~~~~~eiv~~v~~~~~~pv~vKiR-~-g~~~--------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~--~~g~ 182 (376)
++.+.+...++++...+ .++.|-.-+- + |-++ ..+.++..+|+ ++.|+|.|.+.=++.. |.|
T Consensus 116 ~eeNi~~Tk~vv~~ah~-~gvsVEaElG~vgG~Ed~~~~~~~~yT~Peea~~Fv----~~TgvD~LAvaiGt~HG~Y~~- 189 (288)
T 3q94_A 116 FEENVETTKKVVEYAHA-RNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLV----EATGIDCLAPALGSVHGPYKG- 189 (288)
T ss_dssp HHHHHHHHHHHHHHHHT-TTCEEEEEESBCBCSCSSCGGGGCBCCCHHHHHHHH----HHHCCSEEEECSSCBSSCCSS-
T ss_pred HHHHHHHHHHHHHHHHH-cCCeEEEEeeeeccccCCcCCccccCCCHHHHHHHH----HHHCCCEEEEEcCcccCCcCC-
Confidence 34566777777777654 3444433321 1 2221 13466666654 4689999998766642 222
Q ss_pred CCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCH-HHHHHHHHcCcCeeEEchHHh
Q 017176 183 SPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV-DEVNAALRKGAHHVMVGRAAY 240 (376)
Q Consensus 183 ~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~-~da~~~l~~Gad~VmiGRa~l 240 (376)
-+.++++.+.++.+.. ++|++.-||=-.+ +++.++++.|+-=|=|++.+.
T Consensus 190 -------~p~Ld~~~L~~I~~~v-~vpLVlHGgSG~~~e~i~~ai~~Gv~KiNi~Tdl~ 240 (288)
T 3q94_A 190 -------EPNLGFAEMEQVRDFT-GVPLVLHGGTGIPTADIEKAISLGTSKINVNTENQ 240 (288)
T ss_dssp -------SCCCCHHHHHHHHHHH-CSCEEECCCTTCCHHHHHHHHHTTEEEEEECHHHH
T ss_pred -------CCccCHHHHHHHHHhc-CCCEEEeCCCCCCHHHHHHHHHcCCeEEEEChHHH
Confidence 1567789998888765 7999988876555 568888899998888988763
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=87.28 E-value=1.5 Score=40.96 Aligned_cols=87 Identities=11% Similarity=-0.002 Sum_probs=51.2
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEE-EecCCCCHHHHHHHH-
Q 017176 150 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFT-LNGGINTVDEVNAAL- 226 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi-~nGgI~s~~da~~~l- 226 (376)
+++.+.+.+..++ +.|++.|.+-|.|......+..+ +.+.+...++.. .++||| +.|+..+.+.++.+.
T Consensus 30 D~~~l~~lv~~li-~~Gv~Gl~v~GtTGE~~~Ls~eE-------r~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~ 101 (303)
T 2wkj_A 30 DKASLRRLVQFNI-QQGIDGLYVGGSTGEAFVQSLSE-------REQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAAS 101 (303)
T ss_dssp CHHHHHHHHHHHH-HTTCSEEEESSTTTTGGGSCHHH-------HHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HcCCCEEEECeeccChhhCCHHH-------HHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHH
Confidence 3444444444444 58999999988765432222111 123333334332 368987 566666555544333
Q ss_pred --HcCcCeeEEchHHhhCCc
Q 017176 227 --RKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 227 --~~Gad~VmiGRa~l~~P~ 244 (376)
+.|||+||+-...+..|.
T Consensus 102 A~~~Gadavlv~~P~y~~~s 121 (303)
T 2wkj_A 102 AKRYGFDAVSAVTPFYYPFS 121 (303)
T ss_dssp HHHHTCSEEEEECCCSSCCC
T ss_pred HHhCCCCEEEecCCCCCCCC
Confidence 379999999888876663
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=87.20 E-value=4 Score=35.73 Aligned_cols=128 Identities=15% Similarity=0.115 Sum_probs=71.4
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcc-cCccE--EEEecC
Q 017176 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPV--SVKCRI 143 (376)
Q Consensus 67 ~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~-~~~pv--~vKiR~ 143 (376)
+++-+=-.+.++..+.++.+ +.|.|.+|+++ |. +.. +| .++++++|+. .+.|+ .+|+-
T Consensus 9 lilalD~~~~~~~~~~~~~~-~~~vd~ie~g~--~~--~~~---~G----------~~~i~~lr~~~~~~~i~ld~~l~- 69 (218)
T 3jr2_A 9 IQIALDQTNLTDAVAVASNV-ASYVDVIEVGT--IL--AFA---EG----------MKAVSTLRHNHPNHILVCDMKTT- 69 (218)
T ss_dssp EEEEECCSSHHHHHHHHHHH-GGGCSEEEECH--HH--HHH---HT----------THHHHHHHHHCTTSEEEEEEEEC-
T ss_pred eEEEeCCCCHHHHHHHHHHh-cCCceEEEeCc--HH--HHh---cC----------HHHHHHHHHhCCCCcEEEEEeec-
Confidence 45544445666666666665 44799999874 22 111 23 2567777766 34444 55543
Q ss_pred CCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE-ecCCCCHHHH
Q 017176 144 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-NGGINTVDEV 222 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~-nGgI~s~~da 222 (376)
+... ..+ +.+.++|+|.|++|.-... ..-.+.+..+.+ . +++.+. .=++.|++++
T Consensus 70 --d~p~---~~~----~~~~~aGad~i~vh~~~~~-------------~~~~~~~~~~~~-~-g~~~~~d~l~~~T~~~~ 125 (218)
T 3jr2_A 70 --DGGA---ILS----RMAFEAGADWITVSAAAHI-------------ATIAACKKVADE-L-NGEIQIEIYGNWTMQDA 125 (218)
T ss_dssp --SCHH---HHH----HHHHHHTCSEEEEETTSCH-------------HHHHHHHHHHHH-H-TCEEEEECCSSCCHHHH
T ss_pred --ccHH---HHH----HHHHhcCCCEEEEecCCCH-------------HHHHHHHHHHHH-h-CCccceeeeecCCHHHH
Confidence 2211 122 2234689999999974310 000122333333 3 555543 3334578888
Q ss_pred HHHHHcCcCeeEEch
Q 017176 223 NAALRKGAHHVMVGR 237 (376)
Q Consensus 223 ~~~l~~Gad~VmiGR 237 (376)
.++.+.|+|.+.+..
T Consensus 126 ~~~~~~g~d~v~~~~ 140 (218)
T 3jr2_A 126 KAWVDLGITQAIYHR 140 (218)
T ss_dssp HHHHHTTCCEEEEEC
T ss_pred HHHHHcCccceeeee
Confidence 888888999877643
|
| >1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1 | Back alignment and structure |
|---|
Probab=87.12 E-value=1.6 Score=39.90 Aligned_cols=81 Identities=12% Similarity=0.195 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCC-----ccHH
Q 017176 78 NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH-----DSYN 152 (376)
Q Consensus 78 ~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~-----~~~~ 152 (376)
.|.+..+.+++.|||.|||+-|+=. -..+.-.++++.+++ . +.|+.-.|..+. .+..
T Consensus 111 ~~~~yl~~~k~lGF~~IEISdGti~--------------l~~~~~~~lI~~a~~---~-f~Vl~EvG~K~~~~~~~~~~~ 172 (276)
T 1u83_A 111 KVNEFHRYCTYFGCEYIEISNGTLP--------------MTNKEKAAYIADFSD---E-FLVLSEVGSKDAELASRQSSE 172 (276)
T ss_dssp CHHHHHHHHHHTTCSEEEECCSSSC--------------CCHHHHHHHHHHHTT---T-SEEEEECSCCC------CCST
T ss_pred cHHHHHHHHHHcCCCEEEECCCccc--------------CCHHHHHHHHHHHHh---h-cEEeeeccccCccccCCCCHH
Confidence 4556667888999999999866432 123344455554443 3 677777776543 2344
Q ss_pred HHHHHHHHHhhcCCccEEEEccCcc
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKA 177 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~ 177 (376)
++++.+.+-+ ++|++.|++-+|..
T Consensus 173 ~~I~~~~~dL-eAGA~~ViiEaRES 196 (276)
T 1u83_A 173 EWLEYIVEDM-EAGAEKVITEARES 196 (276)
T ss_dssp HHHHHHHHHH-HHTEEEEEEC----
T ss_pred HHHHHHHHHH-HCCCcEEEEeeecc
Confidence 5566555545 58999999999874
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=87.05 E-value=1.5 Score=40.82 Aligned_cols=87 Identities=15% Similarity=0.155 Sum_probs=49.9
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEE-ecCCCCHHHHHHHH-
Q 017176 150 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTL-NGGINTVDEVNAAL- 226 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~-nGgI~s~~da~~~l- 226 (376)
+++.+.+.+..++ +.|++.|.+-|.|......+.. -+.+.+...++.. .++|||+ .|+..+.+.++.+.
T Consensus 34 D~~~l~~lv~~li-~~Gv~gi~v~GttGE~~~Lt~~-------Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~ 105 (304)
T 3l21_A 34 DTATAARLANHLV-DQGCDGLVVSGTTGESPTTTDG-------EKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKA 105 (304)
T ss_dssp CHHHHHHHHHHHH-HTTCSEEEESSTTTTGGGSCHH-------HHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HcCCCEEEeCccccchhhCCHH-------HHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHH
Confidence 3444444444444 5899999998877543222211 1123333333332 3689885 45555544443332
Q ss_pred --HcCcCeeEEchHHhhCCc
Q 017176 227 --RKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 227 --~~Gad~VmiGRa~l~~P~ 244 (376)
+.|||+|++-...+..|.
T Consensus 106 a~~~Gadavlv~~P~y~~~s 125 (304)
T 3l21_A 106 CAAEGAHGLLVVTPYYSKPP 125 (304)
T ss_dssp HHHHTCSEEEEECCCSSCCC
T ss_pred HHHcCCCEEEECCCCCCCCC
Confidence 279999999888776663
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=87.04 E-value=17 Score=33.52 Aligned_cols=193 Identities=8% Similarity=-0.018 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCC
Q 017176 22 NHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCP 101 (376)
Q Consensus 22 ~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP 101 (376)
..+.....+.| +..+-..+.........-......+..-.....+-++..-.+.+++..+.+ +|++.|.+-.++-
T Consensus 33 ~~i~~~L~~~G-v~~IE~g~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~i~~a~~----aG~~~v~i~~~~s 107 (302)
T 2ftp_A 33 IRLVDDLSAAG-LDYIEVGSFVSPKWVPQMAGSAEVFAGIRQRPGVTYAALAPNLKGFEAALE----SGVKEVAVFAAAS 107 (302)
T ss_dssp HHHHHHHHHTT-CSEEEEEECSCTTTCGGGTTHHHHHHHSCCCTTSEEEEECCSHHHHHHHHH----TTCCEEEEEEESC
T ss_pred HHHHHHHHHcC-cCEEEECCCcCccccccccCHHHHHHHhhhcCCCEEEEEeCCHHHHHHHHh----CCcCEEEEEEecC
Q ss_pred CccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCC----ccHHHHHHHHHHHhhcCCccEEEEccCcc
Q 017176 102 SPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH----DSYNQLCDFIYKVSSLSPTRHFIIHSRKA 177 (376)
Q Consensus 102 ~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~----~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~ 177 (376)
...+.++ .+-+.....+.+.++++..++. ++.|..-+..-+... .+.+++.+++..+.+ .|+|.|.+.--..
T Consensus 108 ~~~~~~~--~~~s~ee~l~~~~~~v~~a~~~-G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~-~G~d~i~l~DT~G 183 (302)
T 2ftp_A 108 EAFSQRN--INCSIKDSLERFVPVLEAARQH-QVRVRGYISCVLGCPYDGDVDPRQVAWVARELQQ-MGCYEVSLGDTIG 183 (302)
T ss_dssp HHHHHHH--HSSCHHHHHHHHHHHHHHHHHT-TCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHH-TTCSEEEEEESSS
T ss_pred HHHHHHH--hCCCHHHHHHHHHHHHHHHHHC-CCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHH-cCCCEEEEeCCCC
Q ss_pred ccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEec--CCCCH-HHHHHHHHcCcCee
Q 017176 178 LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG--GINTV-DEVNAALRKGAHHV 233 (376)
Q Consensus 178 ~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nG--gI~s~-~da~~~l~~Gad~V 233 (376)
. ..|....+.+.++++.++++|+-.-| +--.. ..+..+++.||+-|
T Consensus 184 ~----------~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~An~laAv~aGa~~v 232 (302)
T 2ftp_A 184 V----------GTAGATRRLIEAVASEVPRERLAGHFHDTYGQALANIYASLLEGIAVF 232 (302)
T ss_dssp C----------CCHHHHHHHHHHHTTTSCGGGEEEEEBCTTSCHHHHHHHHHHTTCCEE
T ss_pred C----------cCHHHHHHHHHHHHHhCCCCeEEEEeCCCccHHHHHHHHHHHhCCCEE
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A | Back alignment and structure |
|---|
Probab=87.03 E-value=6.4 Score=36.62 Aligned_cols=114 Identities=9% Similarity=0.035 Sum_probs=70.9
Q ss_pred CChHHHHHHH---HHhCCCcEEEecceeecccccccchhhhhh----ccCCCCCCEEEEecCCCHHHHHHHHHHHHHCCC
Q 017176 19 WTDNHYRTLA---RLISKHAWLYTEMLAAETIIYQQGNLDRFL----AFSPEQHPIVLQIGGSNLDNLAKATELANAYNY 91 (376)
Q Consensus 19 ~td~~~r~~~---~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~----~~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~ 91 (376)
+....++.++ .+.|-.|+++.+.+.--..+...++ .+++ +......|+++.+.+++.++-.+.++.++++|+
T Consensus 26 iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er-~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Ga 104 (309)
T 3fkr_A 26 LDLASQKRAVDFMIDAGSDGLCILANFSEQFAITDDER-DVLTRTILEHVAGRVPVIVTTSHYSTQVCAARSLRAQQLGA 104 (309)
T ss_dssp BCHHHHHHHHHHHHHTTCSCEEESSGGGTGGGSCHHHH-HHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccCcccCCHHHH-HHHHHHHHHHhCCCCcEEEecCCchHHHHHHHHHHHHHcCC
Confidence 3445666654 2445346666554332222221111 1222 223456799999999999999999999999999
Q ss_pred CEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC
Q 017176 92 DEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 143 (376)
Q Consensus 92 d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~ 143 (376)
|++-+- .|.. +...--..+-+.+-.++|.+++++|+.+---+
T Consensus 105 davlv~--~Pyy--------~~~~~~s~~~l~~~f~~va~a~~lPiilYn~P 146 (309)
T 3fkr_A 105 AMVMAM--PPYH--------GATFRVPEAQIFEFYARVSDAIAIPIMVQDAP 146 (309)
T ss_dssp SEEEEC--CSCB--------TTTBCCCHHHHHHHHHHHHHHCSSCEEEEECG
T ss_pred CEEEEc--CCCC--------ccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999884 3542 11001245677888888888889999876443
|
| >2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A* | Back alignment and structure |
|---|
Probab=87.01 E-value=1.4 Score=41.49 Aligned_cols=61 Identities=13% Similarity=0.115 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEE
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 140 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vK 140 (376)
+++...+.|+...+.|+|.|||++-+- |.|.=.-+.....+.+..+|+++++..++|++|-
T Consensus 31 ~~~~a~~~a~~~v~~GAdIIDIGgeST-----rPGa~~v~~~eE~~Rv~pvI~~l~~~~~vpiSID 91 (314)
T 2vef_A 31 ALEQALQQARKLIAEGASMLDIGGEST-----RPGSSYVEIEEEIQRVVPVIKAIRKESDVLISID 91 (314)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCC----------CHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcC-----CCCCCCCCHHHHHHHHHHHHHHHHhhCCceEEEe
Confidence 456666677777788999999997432 1111012233566788888899988778899884
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=86.98 E-value=1.7 Score=40.24 Aligned_cols=85 Identities=5% Similarity=-0.005 Sum_probs=50.3
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEE-EecCCCCHHHHHHHH-
Q 017176 150 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFT-LNGGINTVDEVNAAL- 226 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi-~nGgI~s~~da~~~l- 226 (376)
+++.+.+.+..++ +.|++.|.+.|.|......+.. -+.+.+...++... ++||| +.|+..+.+.++.+.
T Consensus 22 D~~~l~~lv~~li-~~Gv~gl~~~GttGE~~~Ls~~-------Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~ 93 (294)
T 3b4u_A 22 DIDAMIAHARRCL-SNGCDSVTLFGTTGEGCSVGSR-------ERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAE 93 (294)
T ss_dssp CHHHHHHHHHHHH-HTTCSEEEESSTTTTGGGSCHH-------HHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HcCCCEEEECccccChhhCCHH-------HHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHHHH
Confidence 3444444444444 5899999999877543222211 11234444444432 58887 566665555544333
Q ss_pred --HcCcCeeEEchHHhhC
Q 017176 227 --RKGAHHVMVGRAAYQN 242 (376)
Q Consensus 227 --~~Gad~VmiGRa~l~~ 242 (376)
+.|||+||+-...+..
T Consensus 94 A~~~Gadavlv~~P~y~~ 111 (294)
T 3b4u_A 94 ALNAGARNILLAPPSYFK 111 (294)
T ss_dssp HHHTTCSEEEECCCCSSC
T ss_pred HHhcCCCEEEEcCCcCCC
Confidence 3799999998887766
|
| >2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A | Back alignment and structure |
|---|
Probab=86.96 E-value=1.3 Score=40.80 Aligned_cols=85 Identities=13% Similarity=0.055 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHH---H
Q 017176 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL---R 227 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l---~ 227 (376)
++.+.+.+..++ +.|++.|.+.|.|......+.. -+.+.+...++...+ -|.+.|+..+.+.++.+. +
T Consensus 18 ~~~l~~lv~~li-~~Gv~gl~v~GttGE~~~Ls~~-------Er~~v~~~~~~~~~g-vi~Gvg~~~t~~ai~la~~A~~ 88 (286)
T 2r91_A 18 PELFANHVKNIT-SKGVDVVFVAGTTGLGPALSLQ-------EKMELTDAATSAARR-VIVQVASLNADEAIALAKYAES 88 (286)
T ss_dssp HHHHHHHHHHHH-HTTCCEEEETSTTTTGGGSCHH-------HHHHHHHHHHHHCSS-EEEECCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HCCCCEEEECccccChhhCCHH-------HHHHHHHHHHHHhCC-EEEeeCCCCHHHHHHHHHHHHh
Confidence 333444444333 5899999999877543222211 113344555555445 456778877776655443 3
Q ss_pred cCcCeeEEchHHhhC-Cc
Q 017176 228 KGAHHVMVGRAAYQN-PW 244 (376)
Q Consensus 228 ~Gad~VmiGRa~l~~-P~ 244 (376)
.|||+||+-...+.. |.
T Consensus 89 ~Gadavlv~~P~y~~~~s 106 (286)
T 2r91_A 89 RGAEAVASLPPYYFPRLS 106 (286)
T ss_dssp TTCSEEEECCSCSSTTCC
T ss_pred cCCCEEEEcCCcCCCCCC
Confidence 799999999888766 53
|
| >1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A* | Back alignment and structure |
|---|
Probab=86.92 E-value=1.5 Score=40.64 Aligned_cols=86 Identities=15% Similarity=0.049 Sum_probs=51.9
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH--
Q 017176 150 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-- 227 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-- 227 (376)
+++.+.+.+..+. +.|++.|.+.|.|......+.. -+.+.+...++...+ -|.+.|+..+.+.++.+..
T Consensus 18 D~~~l~~lv~~li-~~Gv~gl~~~GttGE~~~Ls~e-------Er~~v~~~~~~~~~g-viaGvg~~~t~~ai~la~~A~ 88 (293)
T 1w3i_A 18 DKEKLKIHAENLI-RKGIDKLFVNGTTGLGPSLSPE-------EKLENLKAVYDVTNK-IIFQVGGLNLDDAIRLAKLSK 88 (293)
T ss_dssp CHHHHHHHHHHHH-HTTCCEEEESSTTTTGGGSCHH-------HHHHHHHHHHTTCSC-EEEECCCSCHHHHHHHHHHGG
T ss_pred CHHHHHHHHHHHH-HcCCCEEEECccccChhhCCHH-------HHHHHHHHHHHHcCC-EEEecCCCCHHHHHHHHHHHH
Confidence 3444444444443 5899999998877543222211 113344444544434 4567777777666654443
Q ss_pred -cCcCeeEEchHHhhC-Cc
Q 017176 228 -KGAHHVMVGRAAYQN-PW 244 (376)
Q Consensus 228 -~Gad~VmiGRa~l~~-P~ 244 (376)
.|||+||+-...+.. |.
T Consensus 89 ~~Gadavlv~~P~y~~~~s 107 (293)
T 1w3i_A 89 DFDIVGIASYAPYYYPRMS 107 (293)
T ss_dssp GSCCSEEEEECCCSCSSCC
T ss_pred hcCCCEEEEcCCCCCCCCC
Confidence 799999999888776 53
|
| >3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=86.87 E-value=24 Score=34.41 Aligned_cols=157 Identities=13% Similarity=0.110 Sum_probs=90.6
Q ss_pred CCEEEEec---CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcc---cCccEE
Q 017176 65 HPIVLQIG---GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN---TNVPVS 138 (376)
Q Consensus 65 ~p~~vQL~---g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~---~~~pv~ 138 (376)
.|+++-+= | ++....+.++.+.++|+.+|.|-=..+.+| |.|..|+.-+-..+...+-|++++.+ .+.++.
T Consensus 153 ~PviaD~dtGfG-~~~~v~~~vk~~~~aGaaGi~iEDq~~~~K--kCGH~~gk~lv~~~e~v~rI~Aar~A~~~~g~d~~ 229 (439)
T 3i4e_A 153 APIVADAEAGFG-GVLNAFELMKAMIEAGASGVHFEDQLASVK--KCGHMGGKVLVPTREAVAKLTAARLAADVMGTPTV 229 (439)
T ss_dssp CCEEEECTTTTS-SHHHHHHHHHHHHHHTCSEEEEESBCGGGC--BCSTTCBCCBCCHHHHHHHHHHHHHHHHHHTCCCE
T ss_pred CCeEEECCCCCC-ccHHHHHHHHHHHHcCCEEEEEeCCCCCcc--ccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeE
Confidence 78888873 4 345678889999999999999975543333 23444555455666655556666543 255555
Q ss_pred EEecCCCCC----------------------------CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCC
Q 017176 139 VKCRIGVDD----------------------------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190 (376)
Q Consensus 139 vKiR~g~~~----------------------------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~ 190 (376)
|=-|..... ...+++.++... .+.+ |+|.|-++++...
T Consensus 230 IiARTDa~~a~l~~s~~d~~d~~fi~G~r~~eg~~~~~~gldeAI~Ra~-AY~~-GAD~if~E~~~~~------------ 295 (439)
T 3i4e_A 230 LVARTDAEAADLITSDIDDNDKPYLTGERTVEGFFRTKPGLEQAISRGL-AYAP-YADLIWCETGKPD------------ 295 (439)
T ss_dssp EEEEECTTTCCEESCCCCTTTGGGEEEEECTTSCEEECCSHHHHHHHHH-HHTT-TCSEEEECCSSCC------------
T ss_pred EEEEcCcccccccccccccccchhhcccCcccccccccCCHHHHHHHHH-HHHh-hCCEEEecCCCCC------------
Confidence 555543210 023667666543 4455 9999999875321
Q ss_pred CcccHHHHHHHHh----hCCCCeEEEecC-CCC------HHHHH----HHHHcCcCeeEEchHHhhC
Q 017176 191 PPLKYEYYYALLR----DFPDLTFTLNGG-INT------VDEVN----AALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 191 ~~~~~~~v~~~~~----~~~~ipVi~nGg-I~s------~~da~----~~l~~Gad~VmiGRa~l~~ 242 (376)
.+.+.++.+ .+|...+..|.. .++ .++++ ++-+.|...|.++-+.+.-
T Consensus 296 ----~eei~~f~~~v~~~~P~~~l~~~~sPsfnw~~~~~~~~~~~f~~eL~~lGv~~v~~~la~~ra 358 (439)
T 3i4e_A 296 ----LEYAKKFAEAIHKQFPGKLLSYNCSPSFNWKKNLDDATIAKFQKELGAMGYKFQFITLAGFHA 358 (439)
T ss_dssp ----HHHHHHHHHHHHHHSTTCEEEEECCSSSCHHHHSCHHHHHTHHHHHHHHTCCEEEETTHHHHH
T ss_pred ----HHHHHHHHHHhcccCCceEEeeCCCCCCcCcccCCHHHHHHHHHHHHHcCCeEEEeChHHHHH
Confidence 333333332 244333444432 344 33332 3334799999998766543
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=86.85 E-value=5.4 Score=37.32 Aligned_cols=128 Identities=12% Similarity=0.156 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 152 (376)
|.+.+.+-++.+.+.|.|+|=++.. +|+ +..| ..+.-.++++.+.+.+ .+||.+-+. . .+..
T Consensus 30 D~~~l~~lv~~li~~Gv~gl~v~Gt--------TGE-~~~L--s~~Er~~v~~~~~~~~~grvpviaGvg----~-~~t~ 93 (318)
T 3qfe_A 30 DLASQERYYAYLARSGLTGLVILGT--------NAE-AFLL--TREERAQLIATARKAVGPDFPIMAGVG----A-HSTR 93 (318)
T ss_dssp CHHHHHHHHHHHHTTTCSEEEESSG--------GGT-GGGS--CHHHHHHHHHHHHHHHCTTSCEEEECC----C-SSHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCcc--------ccC-hhhC--CHHHHHHHHHHHHHHhCCCCcEEEeCC----C-CCHH
Confidence 6788889999999999999987641 344 3333 3444455666655544 478887432 2 2355
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE-e-----cCC-CCHHHHHHH
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-N-----GGI-NTVDEVNAA 225 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~-n-----GgI-~s~~da~~~ 225 (376)
+.++. ++.+++.|+|++.+-.-. |-.. +.. ...-++++.++.+.. ++||+. | .|+ .+++.+.++
T Consensus 94 ~ai~l-a~~a~~~Gadavlv~~P~--y~~k-p~~----~~~l~~~f~~ia~a~-~lPiilYn~P~~t~g~~l~~~~~~~L 164 (318)
T 3qfe_A 94 QVLEH-INDASVAGANYVLVLPPA--YFGK-ATT----PPVIKSFFDDVSCQS-PLPVVIYNFPGVCNGIDLDSDMITTI 164 (318)
T ss_dssp HHHHH-HHHHHHHTCSEEEECCCC--C----CCC----HHHHHHHHHHHHHHC-SSCEEEEECCC----CCCCHHHHHHH
T ss_pred HHHHH-HHHHHHcCCCEEEEeCCc--ccCC-CCC----HHHHHHHHHHHHhhC-CCCEEEEeCCcccCCCCCCHHHHHHH
Confidence 56654 445667999999885421 1000 000 011144556666654 677753 2 133 566766666
Q ss_pred HH
Q 017176 226 LR 227 (376)
Q Consensus 226 l~ 227 (376)
.+
T Consensus 165 a~ 166 (318)
T 3qfe_A 165 AR 166 (318)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
| >2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A | Back alignment and structure |
|---|
Probab=86.83 E-value=14 Score=33.82 Aligned_cols=124 Identities=17% Similarity=0.125 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 154 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~ 154 (376)
|.+.+.+-++.+.+.|.|+|=++.. +|+ +.+ -..+.-.++++.+.+.++- |.+-+ | . .+..+.
T Consensus 18 D~~~l~~lv~~li~~Gv~gl~v~Gt--------TGE-~~~--Ls~eEr~~v~~~~~~~~~g-ViaGv--g--~-~~t~~a 80 (288)
T 2nuw_A 18 NVDALKTHAKNLLEKGIDAIFVNGT--------TGL-GPA--LSKDEKRQNLNALYDVTHK-LIFQV--G--S-LNLNDV 80 (288)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEETST--------TTT-GGG--SCHHHHHHHHHHHTTTCSC-EEEEC--C--C-SCHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc--------ccC-hhh--CCHHHHHHHHHHHHHHhCC-eEEee--C--C-CCHHHH
Confidence 6788889999888999999988642 344 333 3456667888888877654 55432 2 2 234555
Q ss_pred HHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE-e-----cCCCCHHHHHHH
Q 017176 155 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-N-----GGINTVDEVNAA 225 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~-n-----GgI~s~~da~~~ 225 (376)
++. ++.+++.|+|++-+-.-. +.. .+. ...-++++.++.+.. ++||+. | |--.+++.+.++
T Consensus 81 i~l-a~~A~~~Gadavlv~~P~--y~~-~~s-----~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~~~~~~~L 147 (288)
T 2nuw_A 81 MEL-VKFSNEMDILGVSSHSPY--YFP-RLP-----EKFLAKYYEEIARIS-SHSLYIYNYPAATGYDIPPSILKSL 147 (288)
T ss_dssp HHH-HHHHHTSCCSEEEECCCC--SSC-SCC-----HHHHHHHHHHHHHHC-CSCEEEEECHHHHSCCCCHHHHTTT
T ss_pred HHH-HHHHHhcCCCEEEEcCCc--CCC-CCC-----HHHHHHHHHHHHHhc-CCCEEEEECchHhCcCCCHHHHhcc
Confidence 554 455678999999886421 111 000 011245666777664 788864 4 333466666544
|
| >1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A | Back alignment and structure |
|---|
Probab=86.73 E-value=8.6 Score=33.55 Aligned_cols=123 Identities=14% Similarity=0.189 Sum_probs=73.9
Q ss_pred EEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCC
Q 017176 68 VLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD 146 (376)
Q Consensus 68 ~vQL~g~-~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~ 146 (376)
-+.|+|- +++ -++.+.++|+|+|=+.+--+++ | | =.++.+.+|.+.+...+ .+|.|- .+
T Consensus 3 ~vKICGit~~e----da~~a~~~GaD~iGfif~~~Sp---R---~-----V~~~~a~~i~~~~~~~~-~~VgVf----vn 62 (205)
T 1nsj_A 3 RVKICGITNLE----DALFSVESGADAVGFVFYPKSK---R---Y-----ISPEDARRISVELPPFV-FRVGVF----VN 62 (205)
T ss_dssp EEEECCCCSHH----HHHHHHHHTCSEEEEECCTTCT---T---B-----CCHHHHHHHHHHSCSSS-EEEEEE----SS
T ss_pred cEEECCCCcHH----HHHHHHHcCCCEEEEEecCCCC---C---c-----CCHHHHHHHHHhCCCCC-CEEEEE----eC
Confidence 3677775 344 3455667899999888642332 1 1 24688888887765322 233331 11
Q ss_pred CCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHH
Q 017176 147 DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL 226 (376)
Q Consensus 147 ~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l 226 (376)
.+.+++ ..++++.++|.|.+||... .+++.++++ ++|||-.=.|.+.++...+.
T Consensus 63 --~~~~~i----~~~~~~~~ld~vQLHG~e~-----------------~~~~~~l~~---~~~vika~~v~~~~~l~~~~ 116 (205)
T 1nsj_A 63 --EEPEKI----LDVASYVQLNAVQLHGEEP-----------------IELCRKIAE---RILVIKAVGVSNERDMERAL 116 (205)
T ss_dssp --CCHHHH----HHHHHHHTCSEEEECSCCC-----------------HHHHHHHHT---TSEEEEEEEESSHHHHHHHG
T ss_pred --CCHHHH----HHHHHhhCCCEEEECCCCC-----------------HHHHHHHhc---CCCEEEEEEcCCHHHHHHHH
Confidence 233343 3344568999999997431 234444432 47888766777888876655
Q ss_pred HcCcCeeEEc
Q 017176 227 RKGAHHVMVG 236 (376)
Q Consensus 227 ~~Gad~VmiG 236 (376)
...+|++.+=
T Consensus 117 ~~~~d~~LlD 126 (205)
T 1nsj_A 117 NYREFPILLD 126 (205)
T ss_dssp GGTTSCEEEE
T ss_pred HcCCCEEEEC
Confidence 5448888773
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=86.72 E-value=21 Score=33.48 Aligned_cols=157 Identities=16% Similarity=0.069 Sum_probs=93.8
Q ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe
Q 017176 62 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 141 (376)
Q Consensus 62 ~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 141 (376)
....|+++.+.+++.++..+.++.++++|+|++-+- .|.-. + -..+-+.+-.++|.+++++||.+--
T Consensus 101 ~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~--~P~Y~--~---------~s~~~l~~~f~~VA~a~~lPiilYn 167 (332)
T 2r8w_A 101 RGRRTLMAGIGALRTDEAVALAKDAEAAGADALLLA--PVSYT--P---------LTQEEAYHHFAAVAGATALPLAIYN 167 (332)
T ss_dssp TTSSEEEEEECCSSHHHHHHHHHHHHHHTCSEEEEC--CCCSS--C---------CCHHHHHHHHHHHHHHCSSCEEEEC
T ss_pred CCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEEC--CCCCC--C---------CCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 456799999999999999999999999999999774 45421 1 1346677788888888889998753
Q ss_pred ---cCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCCC
Q 017176 142 ---RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGIN 217 (376)
Q Consensus 142 ---R~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI~ 217 (376)
|.|.+- +.+ + +.++++.-.+-.|--..+.. ...+..+.++++..+ ++ .+.+|+
T Consensus 168 ~P~~tg~~l--~~e-~---~~~La~~pnIvgiKdssgd~--------------~~~~~~~~~l~~~~~~~f-~v~~G~-- 224 (332)
T 2r8w_A 168 NPTTTRFTF--SDE-L---LVRLAYIPNIRAIKMPLPAD--------------ADYAGELARLRPKLSDDF-AIGYSG-- 224 (332)
T ss_dssp CHHHHCCCC--CHH-H---HHHHHTSTTEEEEEECCCTT--------------CCHHHHHHHHTTTSCTTC-EEEECC--
T ss_pred CccccCcCC--CHH-H---HHHHHcCCCEEEEEeCCCCc--------------hhHHHHHHHHHHhcCCCE-EEEeCc--
Confidence 233332 222 2 22333322343333222110 000344455554433 23 355663
Q ss_pred CHHHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhC
Q 017176 218 TVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256 (376)
Q Consensus 218 s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 256 (376)
-+.+...+..|++|++.|.+-+ -|..+.+.++....|
T Consensus 225 -D~~~l~~l~~G~~G~is~~anv-~P~~~~~l~~a~~~G 261 (332)
T 2r8w_A 225 -DWGCTDATLAGGDTWYSVVAGL-LPVPALQLMRAAQAG 261 (332)
T ss_dssp -HHHHHHHHHTTCSEEEESGGGT-CHHHHHHHHHHHHTT
T ss_pred -hHHHHHHHHCCCCEEEeCHHHh-CHHHHHHHHHHHHCC
Confidence 2345566678999999987764 466654444443445
|
| >4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ... | Back alignment and structure |
|---|
Probab=86.68 E-value=2.7 Score=38.18 Aligned_cols=72 Identities=15% Similarity=0.141 Sum_probs=53.6
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.. ++|+++|.|-.-....+|. ++.+.++++. +++||+---=|.|+-++.++...|||+|.+==+
T Consensus 70 A~~~-~~GA~aiSVLTd~~~F~Gs------------~~~L~~vr~~-v~lPvLrKDFiid~yQI~eAr~~GADaILLI~a 135 (258)
T 4a29_A 70 AKFM-ERYAVGLSITTEEKYFNGS------------YETLRKIASS-VSIPILMSDFIVKESQIDDAYNLGADTVLLIVK 135 (258)
T ss_dssp HHHH-TTTCSEEEEECCSTTTCCC------------HHHHHHHHTT-CSSCEEEESCCCSHHHHHHHHHHTCSEEEEEGG
T ss_pred HHHH-hCCCeEEEEeCCCCCCCCC------------HHHHHHHHHh-cCCCEeeccccccHHHHHHHHHcCCCeeehHHh
Confidence 3444 4899999886544333442 6777777665 599999998899999999999999999987555
Q ss_pred HhhCCc
Q 017176 239 AYQNPW 244 (376)
Q Consensus 239 ~l~~P~ 244 (376)
+|.+..
T Consensus 136 ~L~~~~ 141 (258)
T 4a29_A 136 ILTERE 141 (258)
T ss_dssp GSCHHH
T ss_pred hcCHHH
Confidence 555443
|
| >1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1 | Back alignment and structure |
|---|
Probab=86.64 E-value=3.4 Score=38.03 Aligned_cols=61 Identities=18% Similarity=0.170 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEE
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 140 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vK 140 (376)
.+++...+.|+...+.|+|.||||+-+. |.|.-.-+.....+.+..+++++++. ++|++|-
T Consensus 26 ~~~~~a~~~a~~~v~~GAdiIDIGgest-----rpga~~v~~~eE~~Rv~pvi~~l~~~-~~piSID 86 (280)
T 1eye_A 26 LDLDDAVKHGLAMAAAGAGIVDVGGESS-----RPGATRVDPAVETSRVIPVVKELAAQ-GITVSID 86 (280)
T ss_dssp CSHHHHHHHHHHHHHTTCSEEEEECC-------------------HHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCccC-----CCCCCCCCHHHHHHHHHHHHHHhhcC-CCEEEEe
Confidence 3678888888888889999999996331 11111122345677788888888765 8899884
|
| >1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2 | Back alignment and structure |
|---|
Probab=86.62 E-value=11 Score=34.62 Aligned_cols=112 Identities=14% Similarity=0.232 Sum_probs=72.5
Q ss_pred ccCCHHHHHHHHHHHhcccCccEEEEec-CCC-CC----------CccHHHHHHHHHHHhhcCCccEEEEccCccc--cC
Q 017176 115 LMLDPKFVGEAMSVIAANTNVPVSVKCR-IGV-DD----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL--LN 180 (376)
Q Consensus 115 l~~~~~~~~eiv~~v~~~~~~pv~vKiR-~g~-~~----------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~--~~ 180 (376)
++.+.+...++++...+ .++.|-.-+- +|- ++ ..+.++..+|+ ++.|+|.|.+.=++.. |+
T Consensus 110 ~eeNi~~Tk~vv~~ah~-~gvsVEaElG~vgg~ed~~~~~~~~~~~T~Peea~~Fv----~~TgvD~LAvaiGt~HG~Y~ 184 (286)
T 1gvf_A 110 FAENVKLVKSVVDFCHS-QDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFV----ELTGVDSLAVAIGTAHGLYS 184 (286)
T ss_dssp HHHHHHHHHHHHHHHHH-TTCEEEEEESCCC-----------CCSSCCHHHHHHHH----HHHCCSEEEECSSCCSSCCS
T ss_pred HHHHHHHHHHHHHHHHH-cCCEEEEEEeeccCcccCcccccccccCCCHHHHHHHH----HHHCCCEEEeecCccccCcC
Confidence 34566777777777654 2444433322 111 11 13356665554 4689999998776642 22
Q ss_pred CCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCH-HHHHHHHHcCcCeeEEchHHh
Q 017176 181 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV-DEVNAALRKGAHHVMVGRAAY 240 (376)
Q Consensus 181 g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~-~da~~~l~~Gad~VmiGRa~l 240 (376)
| .+.++++.+.++.+.. ++|++.-||=-.+ +++.++++.|+-=|=|++.+.
T Consensus 185 ~--------~p~Ld~~~L~~I~~~~-~vpLVlHGgSG~~~e~i~~ai~~Gv~KiNi~Tdl~ 236 (286)
T 1gvf_A 185 K--------TPKIDFQRLAEIREVV-DVPLVLHGASDVPDEFVRRTIELGVTKVNVATELK 236 (286)
T ss_dssp S--------CCCCCHHHHHHHHHHC-CSCEEECCCTTCCHHHHHHHHHTTEEEEEECHHHH
T ss_pred C--------CCccCHHHHHHHHHhc-CCCEEEECCCCCCHHHHHHHHHCCCeEEEEChHHH
Confidence 2 2457799999988775 8999988875544 568889999988888888764
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=86.59 E-value=4 Score=40.93 Aligned_cols=42 Identities=19% Similarity=0.342 Sum_probs=34.9
Q ss_pred cccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEE
Q 017176 192 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 235 (376)
Q Consensus 192 ~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vmi 235 (376)
...|+.+..+++.. ++||+.- ++.+.+++..+.+.|+|+|.+
T Consensus 329 ~~~~~~i~~lr~~~-~~PvivK-gv~~~e~A~~a~~aGad~I~v 370 (511)
T 1kbi_A 329 SLTWKDIEELKKKT-KLPIVIK-GVQRTEDVIKAAEIGVSGVVL 370 (511)
T ss_dssp TCCHHHHHHHHHHC-SSCEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred HhHHHHHHHHHHHh-CCcEEEE-eCCCHHHHHHHHHcCCCEEEE
Confidence 34588888888765 8999876 466799999999999999999
|
| >4h2h_A Mandelate racemase/muconate lactonizing enzyme; enolase, mandelate racemase subgroup, enzyme function initia EFI, structural genomics; HET: 0XW; 1.70A {Pelagibaca bermudensis} PDB: 2pmq_A* | Back alignment and structure |
|---|
Probab=86.52 E-value=14 Score=35.08 Aligned_cols=129 Identities=11% Similarity=0.059 Sum_probs=81.0
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc---CccEEEEec
Q 017176 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT---NVPVSVKCR 142 (376)
Q Consensus 66 p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~---~~pv~vKiR 142 (376)
|+-..+...+++++.+.++...+.||..+-+..|.. +.+.-.+.++++++++ ++.+.|-..
T Consensus 141 ~~y~s~~~~~~~~~~~~a~~~~~~G~~~~KiKvg~~----------------~~~~di~~v~~vr~a~~g~~~~l~vDaN 204 (376)
T 4h2h_A 141 SSYYSLGVMEPDEAARQALEKQREGYSRLQVKLGAR----------------PIEIDIEAIRKVWEAVRGTGIALAADGN 204 (376)
T ss_dssp ECEEEECSCCHHHHHHHHHHHHHHTCSEEEEECCSS----------------CHHHHHHHHHHHHHHHTTSCCEEEEECT
T ss_pred eEeeecccCCHHHHHHHHHHHHhcCceEEEEecCCC----------------CHHHHHHHHHHHHhhccCCeeEEEEeec
Confidence 445556667899888888888788999998865421 2233345566666544 345555555
Q ss_pred CCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHH
Q 017176 143 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 222 (376)
Q Consensus 143 ~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da 222 (376)
-+|+ .++.++++ +.+++.++ ++. + .++ .++.+.++++. .++||.+.=.+.+..++
T Consensus 205 ~~~~----~~~A~~~~-~~l~~~~~-~iE-----e-----------P~~--~~~~~~~l~~~-~~~pia~dE~~~~~~~~ 259 (376)
T 4h2h_A 205 RGWT----TRDALRFS-RECPDIPF-VME-----Q-----------PCN--SFEDLEAIRPL-CHHALYMDEDGTSLNTV 259 (376)
T ss_dssp TCCC----HHHHHHHH-HHCTTSCE-EEE-----S-----------CSS--SHHHHHHHGGG-CCSCEEESTTCCSHHHH
T ss_pred cCCC----HHHHHHHH-HHHhhccc-ccc-----C-----------Ccc--hhhhHhhhhhc-ccCccccCcccCCHHHH
Confidence 5553 34545543 34455553 321 0 011 25556666555 48999988889999999
Q ss_pred HHHHHc-CcCeeEE
Q 017176 223 NAALRK-GAHHVMV 235 (376)
Q Consensus 223 ~~~l~~-Gad~Vmi 235 (376)
.++++. .+|.|++
T Consensus 260 ~~~~~~~~~d~v~~ 273 (376)
T 4h2h_A 260 ITAAATSLVDGFGM 273 (376)
T ss_dssp HHHHHTTCCSEECC
T ss_pred HHHHHhhccCcccc
Confidence 999984 4787764
|
| >3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} | Back alignment and structure |
|---|
Probab=86.51 E-value=3.3 Score=37.17 Aligned_cols=86 Identities=8% Similarity=0.069 Sum_probs=55.7
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHCCCCEE--EecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC
Q 017176 66 PIVLQIGGSNLDNLAKATELANAYNYDEI--NLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 143 (376)
Q Consensus 66 p~~vQL~g~~~~~~~~aa~~~~~~G~d~I--eiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~ 143 (376)
.+...|...|...+.+..+.+.+.|+|.+ |+-=|.-+++. .||- ++++++|+.+.. .+++=.
T Consensus 15 ~i~psila~D~~~l~~~i~~~~~~gad~lhvDvmDG~fvpn~----t~G~----------~~v~~lr~~~~~--DvhLMv 78 (237)
T 3cu2_A 15 KLSVGILSANWLQLNEEVTTLLENQINVLHFDIADGQFSSLF----TVGA----------IGIKYFPTHCFK--DVHLMV 78 (237)
T ss_dssp CEEEEGGGSCGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSCB----CBCT----------HHHHTSCTTSEE--EEEEEC
T ss_pred eEEEeeeeCCcccHHHHHHHHHHcCCCEEEEEEecCccccch----hhhH----------HHHHHHhhhCCC--CeEEEE
Confidence 37888988898889999999999999974 55334422221 1451 567778876643 555433
Q ss_pred CCCCCccHHHHHHHHHHHhhcCCccEEEEccCc
Q 017176 144 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK 176 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~ 176 (376)
++. +..++ .+.++|+|.|+||...
T Consensus 79 --~~p---~~~i~----~~~~aGAd~itvH~ea 102 (237)
T 3cu2_A 79 --RNQ---LEVAK----AVVANGANLVTLQLEQ 102 (237)
T ss_dssp --SCH---HHHHH----HHHHTTCSEEEEETTC
T ss_pred --ECH---HHHHH----HHHHcCCCEEEEecCC
Confidence 332 22222 2346999999999754
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=86.43 E-value=20 Score=33.05 Aligned_cols=153 Identities=17% Similarity=0.180 Sum_probs=92.6
Q ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC-ccEEEE
Q 017176 62 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVK 140 (376)
Q Consensus 62 ~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~-~pv~vK 140 (376)
....|+++.+.+++.++-.+.++.++++|+|++-+- .|... + ...+-+.+-.++|.++++ +||.+-
T Consensus 78 ~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~--~P~y~--~---------~s~~~l~~~f~~va~a~~~lPiilY 144 (303)
T 2wkj_A 78 KGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAV--TPFYY--P---------FSFEEHCDHYRAIIDSADGLPMVVY 144 (303)
T ss_dssp TTTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEE--CCCSS--C---------CCHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCcEEEecCCCCHHHHHHHHHHHHhCCCCEEEec--CCCCC--C---------CCHHHHHHHHHHHHHhCCCCCEEEE
Confidence 456799999999999999999999999999999885 45421 1 134667777788877777 999875
Q ss_pred e---cCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCC
Q 017176 141 C---RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 217 (376)
Q Consensus 141 i---R~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~ 217 (376)
- |.|.+- +.+ + +.++++.-.+-.|--..+. ...+.++++..++.. +.+|+=
T Consensus 145 n~P~~tg~~l--~~~-~---~~~La~~pnIvgiK~s~gd------------------~~~~~~~~~~~~~f~-v~~G~d- 198 (303)
T 2wkj_A 145 NIPALSGVKL--TLD-Q---INTLVTLPGVGALXQTSGD------------------LYQMEQIRREHPDLV-LYNGYD- 198 (303)
T ss_dssp ECHHHHCCCC--CHH-H---HHHHHTSTTEEEEEECCCC------------------HHHHHHHHHHCTTCE-EEECCG-
T ss_pred eCccccCCCC--CHH-H---HHHHhcCCCEEEEeCCCCC------------------HHHHHHHHHhCCCeE-EEeCcH-
Confidence 4 334332 222 2 2233332234333322211 344445554433444 445541
Q ss_pred CHHHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhC
Q 017176 218 TVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256 (376)
Q Consensus 218 s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 256 (376)
+.+...+..|++|++.+.+-+ -|..+.+.++....|
T Consensus 199 --~~~~~~l~~G~~G~is~~an~-~P~~~~~l~~a~~~G 234 (303)
T 2wkj_A 199 --NIFASGLLAGADGGIGSTYNI-MGWRYQGIVKALKEG 234 (303)
T ss_dssp --GGHHHHHHHTCCEEEETTHHH-HHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHCCCCEEEeCHHHh-CHHHHHHHHHHHHCC
Confidence 225556667999999988765 465554444443445
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=86.42 E-value=1.4 Score=41.02 Aligned_cols=86 Identities=10% Similarity=0.123 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCC--CeEEEecCCCCHHHHHHHHH
Q 017176 150 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD--LTFTLNGGINTVDEVNAALR 227 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~--ipVi~nGgI~s~~da~~~l~ 227 (376)
+++.+.+.+..+++ .|++.|.+-|.|......+..+. .+.+...++...+ +|||+.-|=.+.+++.+..+
T Consensus 26 D~~~l~~lv~~li~-~Gv~gl~v~GttGE~~~Ls~~Er-------~~v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~ 97 (301)
T 3m5v_A 26 DEQSYARLIKRQIE-NGIDAVVPVGTTGESATLTHEEH-------RTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAK 97 (301)
T ss_dssp CHHHHHHHHHHHHH-TTCCEEECSSTTTTGGGSCHHHH-------HHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-cCCCEEEECccccChhhCCHHHH-------HHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHH
Q ss_pred ----cCcCeeEEchHHhhCC
Q 017176 228 ----KGAHHVMVGRAAYQNP 243 (376)
Q Consensus 228 ----~Gad~VmiGRa~l~~P 243 (376)
.|||+||+-...+..|
T Consensus 98 ~a~~~Gadavlv~~P~y~~~ 117 (301)
T 3m5v_A 98 FAKEHGADGILSVAPYYNKP 117 (301)
T ss_dssp HHHHTTCSEEEEECCCSSCC
T ss_pred HHHHcCCCEEEEcCCCCCCC
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=86.39 E-value=20 Score=32.89 Aligned_cols=153 Identities=14% Similarity=0.080 Sum_probs=92.1
Q ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe
Q 017176 62 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 141 (376)
Q Consensus 62 ~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 141 (376)
....|+++.+.+++.++-.+.++.++++|+|++-+- .|.-. + ...+-+.+-.++|.+++++|+.+--
T Consensus 68 ~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~--~P~y~--~---------~s~~~l~~~f~~ia~a~~lPiilYn 134 (292)
T 2ojp_A 68 DGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTV--TPYYN--R---------PSQEGLYQHFKAIAEHTDLPQILYN 134 (292)
T ss_dssp TTSSCEEEECCCSSHHHHHHHHHHTTTSSCSEEEEE--CCCSS--C---------CCHHHHHHHHHHHHTTCSSCEEEEC
T ss_pred CCCCcEEEecCCccHHHHHHHHHHHHhcCCCEEEEC--CCCCC--C---------CCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 456799999999999999999999999999999775 45421 1 1346788888888888899998753
Q ss_pred ---cCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCCC
Q 017176 142 ---RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGIN 217 (376)
Q Consensus 142 ---R~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI~ 217 (376)
|.|.+- +.+ + +.++++.-.+-.|--.. + +...+.++++..+ +..| .+|+=
T Consensus 135 ~P~~tg~~l--~~~-~---~~~La~~pnivgiK~s~---------g---------d~~~~~~~~~~~~~~f~v-~~G~d- 188 (292)
T 2ojp_A 135 VPSRTGCDL--LPE-T---VGRLAKVKNIIGIXEAT---------G---------NLTRVNQIKELVSDDFVL-LSGDD- 188 (292)
T ss_dssp CHHHHSCCC--CHH-H---HHHHHTSTTEEEC-CCS---------C---------CTHHHHHHHTTSCTTSBC-EESCG-
T ss_pred CcchhccCC--CHH-H---HHHHHcCCCEEEEeCCC---------C---------CHHHHHHHHHhcCCCEEE-EECcH-
Confidence 233332 222 2 22333212222221111 1 1344555555433 3433 45531
Q ss_pred CHHHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhC
Q 017176 218 TVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256 (376)
Q Consensus 218 s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 256 (376)
+.+...+..|++|++.|.+-+ -|..+.+.++....|
T Consensus 189 --~~~~~~l~~G~~G~is~~~n~-~P~~~~~l~~a~~~G 224 (292)
T 2ojp_A 189 --ASALDFMQYGGHGVISVTANV-AARDMAQMCKLAAEG 224 (292)
T ss_dssp --GGHHHHHHTTCCEEEESGGGT-CHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHCCCcEEEeCHHHh-hHHHHHHHHHHHHCC
Confidence 224456678999999988765 477655444443444
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=86.31 E-value=7.5 Score=34.48 Aligned_cols=128 Identities=13% Similarity=0.073 Sum_probs=72.1
Q ss_pred HHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC-CCCC---CccHHHHHHHH
Q 017176 83 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI-GVDD---HDSYNQLCDFI 158 (376)
Q Consensus 83 a~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~-g~~~---~~~~~~~~~~i 158 (376)
|..+++.|+|-|||+.+=.. | .+--....+..+..+ .+.+++||-|=+|+ +-+- ..+++.+.+.+
T Consensus 14 a~~A~~~GAdRIELc~~L~~---------G-GlTPS~g~i~~~~~~-~~~~~ipV~vMIRPR~GdF~Ys~~E~~~M~~Di 82 (224)
T 2bdq_A 14 LTRLDKAIISRVELCDNLAV---------G-GTTPSYGVIKEANQY-LHEKGISVAVMIRPRGGNFVYNDLELRIMEEDI 82 (224)
T ss_dssp GGGCCTTTCCEEEEEBCGGG---------T-CBCCCHHHHHHHHHH-HHHTTCEEEEECCSSSSCSCCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEcCCccc---------C-CcCCCHHHHHHHHHh-hhhcCCceEEEECCCCCCCcCCHHHHHHHHHHH
Confidence 44567889999999753111 1 122223333333211 15568999998888 2111 13455555544
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecC---C--CCHHHHHHHHH-cCcCe
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG---I--NTVDEVNAALR-KGAHH 232 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGg---I--~s~~da~~~l~-~Gad~ 232 (376)
. .+.+.|+|.+.+-.=+. .| .++.+.+.++++...++||..-=- + .++..+.+.+. .|++-
T Consensus 83 ~-~~~~~GadGvV~G~Lt~--dg----------~iD~~~~~~Li~~a~~~~vTFHRAFD~~~~~d~~~ale~L~~lGv~r 149 (224)
T 2bdq_A 83 L-RAVELESDALVLGILTS--NN----------HIDTEAIEQLLPATQGLPLVFHMAFDVIPKSDQKKSIDQLVALGFTR 149 (224)
T ss_dssp H-HHHHTTCSEEEECCBCT--TS----------SBCHHHHHHHHHHHTTCCEEECGGGGGSCTTTHHHHHHHHHHTTCCE
T ss_pred H-HHHHcCCCEEEEeeECC--CC----------CcCHHHHHHHHHHhCCCeEEEECchhccCCcCHHHHHHHHHHcCCCE
Confidence 3 44579999988643221 11 234666666665544677765433 3 56666655554 78887
Q ss_pred eE
Q 017176 233 VM 234 (376)
Q Consensus 233 Vm 234 (376)
|.
T Consensus 150 IL 151 (224)
T 2bdq_A 150 IL 151 (224)
T ss_dssp EE
T ss_pred EE
Confidence 76
|
| >3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=86.29 E-value=4.3 Score=37.70 Aligned_cols=107 Identities=14% Similarity=0.073 Sum_probs=61.0
Q ss_pred ccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEE-ccCccccCCCCCCCCCC
Q 017176 111 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII-HSRKALLNGISPAENRT 189 (376)
Q Consensus 111 yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~v-h~r~~~~~g~~~~~~~~ 189 (376)
.|+..+++.+++.++ . .++.||.+|.-...+ .+++...+ .. +.+.|.+.|++ |.++. + +.. +
T Consensus 137 IgA~~~~n~~LLr~v----a-~~gkPVilK~Gms~t-~~ei~~av---e~-i~~~Gn~~iiL~erg~~-y-~~~---~-- 199 (298)
T 3fs2_A 137 IPAFLCRQTDLLIAA----A-RTGRVVNVKKGQFLA-PWDMKNVL---AK-ITESGNPNVLATERGVS-F-GYN---T-- 199 (298)
T ss_dssp ECGGGTTCHHHHHHH----H-HTTSEEEEECCTTCC-GGGHHHHH---HH-HHTTTCCCEEEEECCEE-C-SSS---C--
T ss_pred ECccccCCHHHHHHH----H-ccCCcEEEeCCCCCC-HHHHHHHH---HH-HHHcCCCeEEEEECCCC-C-CCC---C--
Confidence 377777888865553 2 358899999765322 23333333 22 34578766655 66552 2 111 0
Q ss_pred CCcccHHHHHHHHhhCCCCeEEEe---------------cCCCC--HHHHHHHHHcCcCeeEEch
Q 017176 190 IPPLKYEYYYALLRDFPDLTFTLN---------------GGINT--VDEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 190 ~~~~~~~~v~~~~~~~~~ipVi~n---------------GgI~s--~~da~~~l~~Gad~VmiGR 237 (376)
..+++..+..+++ + ++||+.. ||.++ +.-+..++..||||++|=+
T Consensus 200 -~~vdl~~i~~lk~-~-~~PV~~D~sHsvq~p~~~~~~s~G~r~~v~~~a~AAvAlGAdGl~IE~ 261 (298)
T 3fs2_A 200 -LVSDMRALPIMAG-L-GAPVIFDATHSVQQPGGQGGSTGGQREFVETLARAAVAVGVAGFFIET 261 (298)
T ss_dssp -EECCTTHHHHHHT-T-TSCEEEEHHHHTCCCC--------CGGGHHHHHHHHHHHCCSEEEEEE
T ss_pred -CccCHHHHHHHHH-c-CCcEEEcCCCccccCCcccCCCCCchhhHHHHHHHHHHcCCCEEEEEe
Confidence 1134556666665 6 9999984 23221 2345566778999999843
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=86.27 E-value=6.5 Score=37.30 Aligned_cols=141 Identities=6% Similarity=-0.060 Sum_probs=72.3
Q ss_pred HHHHHHHHCCCCEEEecCC-------CCCccccCCCCccccccCC-------HHHHHHHHHH-HhcccCccEEEEecCCC
Q 017176 81 KATELANAYNYDEINLNCG-------CPSPKVAGHGCFGVSLMLD-------PKFVGEAMSV-IAANTNVPVSVKCRIGV 145 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~g-------cP~~~v~r~g~yG~~l~~~-------~~~~~eiv~~-v~~~~~~pv~vKiR~g~ 145 (376)
+..+.+.+.||-+|++-.- .|.+.+.+.. .+++|+ .+...+-++. .++..+.|+.+-+--
T Consensus 63 e~~~~~~~~G~G~v~~ktvt~~pq~gnp~PR~~~~~---~~~iN~~G~~n~G~~~~~~~l~~~~~~~~~~pvivsI~g-- 137 (345)
T 3oix_A 63 EELAAIDHSEAGSFVTXTGTLEERAGNPQPRYADTK---LGSINSMGLPNLGINYYLDYVTELQKQPDSKNHFLSLVG-- 137 (345)
T ss_dssp HHHHHHHTSSCSBCBCCCBCSSCBCCSCSCCEEECS---SEEEECCCCCBSCHHHHHHHHHHHHHSTTCCCCEEEECC--
T ss_pred HHHHHHHHcCCCeEEeeeecCCCCCCCCCCcEEecc---cchhccCCCCChhHHHHHHHHHHHhhccCCCCEEEEecC--
Confidence 4556677889999988543 3434333322 122332 2333333333 334567888886642
Q ss_pred CCCccHHHHHHHHHHHhhcCCcc-EEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE--ecCCCCHHHH
Q 017176 146 DDHDSYNQLCDFIYKVSSLSPTR-HFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL--NGGINTVDEV 222 (376)
Q Consensus 146 ~~~~~~~~~~~~i~~~~e~~Gvd-~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~--nGgI~s~~da 222 (376)
. +.++.++. ++.++++|++ +|.|.-..+...|.. ..-.-+....+.+..+++ ..++||+. .-+ .+..++
T Consensus 138 ~---~~~d~~~~-a~~l~~~g~~d~ielNisCPn~~G~~--~l~~~~e~l~~il~av~~-~~~~PV~vKi~p~-~~~~~~ 209 (345)
T 3oix_A 138 M---SPEETHTI-LXMVEASKYQGLVELNLSCPNVPGXP--QIAYDFETTDQILSEVFT-YFTKPLGIKLPPY-FDIVHF 209 (345)
T ss_dssp S---SHHHHHHH-HHHHHHSSCCSEEEEECSCCCSTTCC--CGGGCHHHHHHHHHHHTT-TCCSCEEEEECCC-CCHHHH
T ss_pred C---CHHHHHHH-HHHHhccCCCcEEEEecCCCCcCCch--hhcCCHHHHHHHHHHHHH-HhCCCeEEEECCC-CCHHHH
Confidence 2 34444443 3445667877 999875433222211 100000111233344433 34788864 333 477787
Q ss_pred HHHHH-cCcCeeE
Q 017176 223 NAALR-KGAHHVM 234 (376)
Q Consensus 223 ~~~l~-~Gad~Vm 234 (376)
.++++ .|+|+|.
T Consensus 210 a~~~~~aga~~i~ 222 (345)
T 3oix_A 210 DQAAAIFNXYPLT 222 (345)
T ss_dssp HHHHHHHTTSCCS
T ss_pred HHHHHHhCCCceE
Confidence 77776 7887663
|
| >2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A | Back alignment and structure |
|---|
Probab=86.20 E-value=1.5 Score=40.63 Aligned_cols=86 Identities=13% Similarity=-0.018 Sum_probs=50.6
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH--
Q 017176 150 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-- 227 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-- 227 (376)
+++.+.+.+..++ +.|++.|.+.|.|......+.. -+.+.+...++...+ -|.+.|+..+.+.++.+..
T Consensus 18 D~~~l~~lv~~li-~~Gv~gl~v~GtTGE~~~Ls~e-------Er~~v~~~~~~~~~g-ViaGvg~~~t~~ai~la~~A~ 88 (288)
T 2nuw_A 18 NVDALKTHAKNLL-EKGIDAIFVNGTTGLGPALSKD-------EKRQNLNALYDVTHK-LIFQVGSLNLNDVMELVKFSN 88 (288)
T ss_dssp CHHHHHHHHHHHH-HTTCCEEEETSTTTTGGGSCHH-------HHHHHHHHHTTTCSC-EEEECCCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HcCCCEEEECccccChhhCCHH-------HHHHHHHHHHHHhCC-eEEeeCCCCHHHHHHHHHHHH
Confidence 3444444444443 5899999999877543222211 112334444444334 4557777766665554432
Q ss_pred -cCcCeeEEchHHhhC-Cc
Q 017176 228 -KGAHHVMVGRAAYQN-PW 244 (376)
Q Consensus 228 -~Gad~VmiGRa~l~~-P~ 244 (376)
.|||+||+-...+.. |.
T Consensus 89 ~~Gadavlv~~P~y~~~~s 107 (288)
T 2nuw_A 89 EMDILGVSSHSPYYFPRLP 107 (288)
T ss_dssp TSCCSEEEECCCCSSCSCC
T ss_pred hcCCCEEEEcCCcCCCCCC
Confidence 799999999888766 53
|
| >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=86.13 E-value=13 Score=34.57 Aligned_cols=127 Identities=9% Similarity=0.081 Sum_probs=76.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHH
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~ 152 (376)
-|.+.+.+-++.+.+.|.|+|=++.. +|+ +.+| ..+.-.++++.+.+.+ .+||.+-+. . .++.
T Consensus 26 iD~~~l~~lv~~li~~Gv~Gl~v~Gt--------TGE-~~~L--t~~Er~~v~~~~v~~~grvpViaGvg----~-~~t~ 89 (313)
T 3dz1_A 26 IDDVSIDRLTDFYAEVGCEGVTVLGI--------LGE-APKL--DAAEAEAVATRFIKRAKSMQVIVGVS----A-PGFA 89 (313)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEEESTG--------GGT-GGGS--CHHHHHHHHHHHHHHCTTSEEEEECC----C-SSHH
T ss_pred cCHHHHHHHHHHHHHCCCCEEEeCcc--------CcC-hhhC--CHHHHHHHHHHHHHHcCCCcEEEecC----C-CCHH
Confidence 36788999999999999999977641 344 3333 3444455555555544 578877432 2 2355
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEE-e-----cCCCCHHHHHHH
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTL-N-----GGINTVDEVNAA 225 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~-n-----GgI~s~~da~~~ 225 (376)
+.++. ++.+++.|+|++.+-.-. +. +. ...-++++.++.+..+ ++||+. | |--.+++.+.++
T Consensus 90 ~ai~l-a~~A~~~Gadavlv~~P~--~~---~s-----~~~l~~~f~~va~a~~~~lPiilYn~P~~tg~~l~~~~~~~L 158 (313)
T 3dz1_A 90 AMRRL-ARLSMDAGAAGVMIAPPP--SL---RT-----DEQITTYFRQATEAIGDDVPWVLQDYPLTLSVVMTPKVIRQI 158 (313)
T ss_dssp HHHHH-HHHHHHHTCSEEEECCCT--TC---CS-----HHHHHHHHHHHHHHHCTTSCEEEEECHHHHCCCCCHHHHHHH
T ss_pred HHHHH-HHHHHHcCCCEEEECCCC--CC---CC-----HHHHHHHHHHHHHhCCCCCcEEEEeCccccCcCCCHHHHHHH
Confidence 56654 455678999999885321 11 10 0112456666666542 388865 3 545677777776
Q ss_pred HH
Q 017176 226 LR 227 (376)
Q Consensus 226 l~ 227 (376)
.+
T Consensus 159 a~ 160 (313)
T 3dz1_A 159 VM 160 (313)
T ss_dssp HH
T ss_pred HH
Confidence 63
|
| >1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=86.09 E-value=18 Score=33.04 Aligned_cols=136 Identities=17% Similarity=0.139 Sum_probs=86.0
Q ss_pred EEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCC
Q 017176 67 IVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV 145 (376)
Q Consensus 67 ~~vQL~g~-~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~ 145 (376)
+++-.++. +.+...+.|+.++++|+|.+-...--|-... +.|=+ + .+.-.++++++++..++|+..- +
T Consensus 41 vIAgpc~~~~~e~a~~~a~~~k~~ga~~~k~~~~kprts~---~~f~g-~---g~~gl~~l~~~~~~~Gl~~~te----~ 109 (276)
T 1vs1_A 41 VIAGPCSVESWEQVREAALAVKEAGAHMLRGGAFKPRTSP---YSFQG-L---GLEGLKLLRRAGDEAGLPVVTE----V 109 (276)
T ss_dssp EEEECSBCCCHHHHHHHHHHHHHHTCSEEECBSSCCCSST---TSCCC-C---THHHHHHHHHHHHHHTCCEEEE----C
T ss_pred EEEecCCCCCHHHHHHHHHHHHHhCCCEEEeEEEeCCCCh---hhhcC-C---CHHHHHHHHHHHHHcCCcEEEe----c
Confidence 34444432 6788888999999999999877665554321 11211 1 1444566677777789998763 2
Q ss_pred CCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCC-CHHHHHH
Q 017176 146 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN-TVDEVNA 224 (376)
Q Consensus 146 ~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~-s~~da~~ 224 (376)
-+..+.+ ++ .+. +|++.|-+|+.. ++.++.++.+. +.||+..-|.. |.+++..
T Consensus 110 ~d~~~~~----~l----~~~-vd~~kIgs~~~~---------------n~~ll~~~a~~--~kPV~lk~G~~~t~~ei~~ 163 (276)
T 1vs1_A 110 LDPRHVE----TV----SRY-ADMLQIGARNMQ---------------NFPLLREVGRS--GKPVLLKRGFGNTVEELLA 163 (276)
T ss_dssp CCGGGHH----HH----HHH-CSEEEECGGGTT---------------CHHHHHHHHHH--TCCEEEECCTTCCHHHHHH
T ss_pred CCHHHHH----HH----HHh-CCeEEECccccc---------------CHHHHHHHHcc--CCeEEEcCCCCCCHHHHHH
Confidence 2223332 22 245 899999888642 15566666653 89999999997 9888777
Q ss_pred HHH----cCc-CeeEEchHH
Q 017176 225 ALR----KGA-HHVMVGRAA 239 (376)
Q Consensus 225 ~l~----~Ga-d~VmiGRa~ 239 (376)
+++ .|. +.+.+=||.
T Consensus 164 Ave~i~~~Gn~~i~L~~Rg~ 183 (276)
T 1vs1_A 164 AAEYILLEGNWQVVLVERGI 183 (276)
T ss_dssp HHHHHHHTTCCCEEEEECCB
T ss_pred HHHHHHHcCCCeEEEEeCCc
Confidence 664 576 455555565
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=86.03 E-value=21 Score=32.84 Aligned_cols=153 Identities=12% Similarity=0.039 Sum_probs=93.2
Q ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe
Q 017176 62 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 141 (376)
Q Consensus 62 ~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 141 (376)
....|+++.+.+++.++-.+.++.++++|+|++-+- .|... + -..+-+.+-.++|.+++++|+.+--
T Consensus 67 ~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~--~P~y~--~---------~s~~~l~~~f~~va~a~~lPiilYn 133 (297)
T 2rfg_A 67 QGRVPVIAGAGSNNPVEAVRYAQHAQQAGADAVLCV--AGYYN--R---------PSQEGLYQHFKMVHDAIDIPIIVYN 133 (297)
T ss_dssp TTSSCBEEECCCSSHHHHHHHHHHHHHHTCSEEEEC--CCTTT--C---------CCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred CCCCeEEEccCCCCHHHHHHHHHHHHhcCCCEEEEc--CCCCC--C---------CCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 456799999999999999999999999999999884 45421 1 1346677888888888899998754
Q ss_pred ---cCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCCC
Q 017176 142 ---RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGIN 217 (376)
Q Consensus 142 ---R~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI~ 217 (376)
|.|.+- +.+ + +.++++.-.+-.|--..+. ...+.++++..+ +.. +.+|+=
T Consensus 134 ~P~~tg~~l--~~~-~---~~~La~~pnIvgiKds~gd------------------~~~~~~~~~~~~~~f~-v~~G~d- 187 (297)
T 2rfg_A 134 IPPRAVVDI--KPE-T---MARLAALPRIVGVKDATTD------------------LARISRERMLINKPFS-FLSGDD- 187 (297)
T ss_dssp CHHHHSCCC--CHH-H---HHHHHTSTTEEEEEECSCC------------------TTHHHHHHTTCCSCCE-EEESCG-
T ss_pred CccccCCCC--CHH-H---HHHHHcCCCEEEEEeCCCC------------------HHHHHHHHHhcCCCEE-EEeCcH-
Confidence 233332 222 2 2233332233333322211 223445554433 343 456642
Q ss_pred CHHHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhC
Q 017176 218 TVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256 (376)
Q Consensus 218 s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 256 (376)
+.+...+..|++|++.|.+-+ -|..+.+.++....|
T Consensus 188 --~~~l~~l~~G~~G~is~~an~-~P~~~~~l~~a~~~G 223 (297)
T 2rfg_A 188 --MTAIAYNASGGQGCISVSANI-APALYGQMQTATLQG 223 (297)
T ss_dssp --GGHHHHHHTTCCEEEESGGGT-CHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHCCCCEEEecHHHh-hHHHHHHHHHHHHCC
Confidence 224456678999999988765 377655444444445
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* | Back alignment and structure |
|---|
Probab=86.03 E-value=1.1 Score=43.33 Aligned_cols=44 Identities=14% Similarity=0.309 Sum_probs=37.1
Q ss_pred CcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017176 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 191 ~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
+...|+.+.++++.. ++||+.- +|.+++++..+.+.|||+|.++
T Consensus 210 p~~~~~~i~~i~~~~-~~Pv~vk-gv~t~e~a~~a~~aGad~I~vs 253 (380)
T 1p4c_A 210 ASFNWEALRWLRDLW-PHKLLVK-GLLSAEDADRCIAEGADGVILS 253 (380)
T ss_dssp TTCCHHHHHHHHHHC-CSEEEEE-EECCHHHHHHHHHTTCSEEEEC
T ss_pred ccccHHHHHHHHHhc-CCCEEEE-ecCcHHHHHHHHHcCCCEEEEc
Confidence 344588888888876 8999875 4899999999999999999993
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=86.02 E-value=3.8 Score=37.19 Aligned_cols=107 Identities=19% Similarity=0.195 Sum_probs=54.9
Q ss_pred HHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCc---------
Q 017176 122 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP--------- 192 (376)
Q Consensus 122 ~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~--------- 192 (376)
+.+..+..++.-...+..-+..|..+ .++..+. ++.++++|+|.|.+.. ..... -.+.+.+..
T Consensus 4 ~~~~f~~~~~~~~~~~i~~i~~g~p~---~~~~~~~-~~~l~~~G~D~IElG~--P~sdP--~adgp~i~~a~~~al~~G 75 (262)
T 2ekc_A 4 ISDKFTELKEKREKALVSYLMVGYPD---YETSLKA-FKEVLKNGTDILEIGF--PFSDP--VADGPTIQVAHEVALKNG 75 (262)
T ss_dssp HHHHHHHHHHHTBCEEEEEEETTSSC---HHHHHHH-HHHHHHTTCSEEEEEC--CCSCC--TTSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCceEEEEecCCCCC---hHHHHHH-HHHHHHcCCCEEEECC--CCCCc--ccccHHHHHHHHHHHHcC
Confidence 33444444432222233333466544 3344443 3456689999999842 11000 001001100
Q ss_pred ----ccHHHHHHHHhhCCCCeEEEecCCCC------HHHHHHHHHcCcCeeEEc
Q 017176 193 ----LKYEYYYALLRDFPDLTFTLNGGINT------VDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 193 ----~~~~~v~~~~~~~~~ipVi~nGgI~s------~~da~~~l~~Gad~VmiG 236 (376)
..++.+.++++..+++|++..|..+. ...+..+.+.|+|+|.+.
T Consensus 76 ~~~~~~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~ 129 (262)
T 2ekc_A 76 IRFEDVLELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVP 129 (262)
T ss_dssp CCHHHHHHHHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECT
T ss_pred CCHHHHHHHHHHHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEEC
Confidence 01345677777655899999654431 244555666999999984
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=85.90 E-value=4.9 Score=38.06 Aligned_cols=94 Identities=11% Similarity=0.128 Sum_probs=56.3
Q ss_pred CCCCCEEEEec-------CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC
Q 017176 62 PEQHPIVLQIG-------GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN 134 (376)
Q Consensus 62 ~~~~p~~vQL~-------g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~ 134 (376)
..+.|+++=|. |.+.+++.+.++.++++|+|.|++..|.-........ + +..-.+.++.+++.++
T Consensus 217 G~d~pV~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~--~------~~~~~~~~~~ir~~~~ 288 (349)
T 3hgj_A 217 PRELPLFVRVSATDWGEGGWSLEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPL--A------PGFQVPFADAVRKRVG 288 (349)
T ss_dssp CTTSCEEEEEESCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCC--C------TTTTHHHHHHHHHHHC
T ss_pred cCCceEEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCcCcccccCC--C------ccccHHHHHHHHHHcC
Confidence 45678988776 4568899999999999999999998653221100000 1 1112345666677677
Q ss_pred ccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEE
Q 017176 135 VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII 172 (376)
Q Consensus 135 ~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~v 172 (376)
+||.+- -|+.+ .++. .+++++..+|.|.+
T Consensus 289 iPVi~~--Ggi~t---~e~a----~~~l~~G~aD~V~i 317 (349)
T 3hgj_A 289 LRTGAV--GLITT---PEQA----ETLLQAGSADLVLL 317 (349)
T ss_dssp CEEEEC--SSCCC---HHHH----HHHHHTTSCSEEEE
T ss_pred ceEEEE--CCCCC---HHHH----HHHHHCCCceEEEe
Confidence 888662 22222 3332 23344334998775
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=85.82 E-value=14 Score=32.69 Aligned_cols=128 Identities=11% Similarity=0.102 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCC--ccHHH
Q 017176 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH--DSYNQ 153 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~--~~~~~ 153 (376)
.+.+.+-++.++++|+|+|-+-+=.|. +. -|.+.+.+++++.. +.++|.-.- +|.. .+..+
T Consensus 75 ~~~M~~Di~~~~~~GadGvV~G~Lt~d------g~------iD~~~~~~Li~~a~---~~~vTFHRA--FD~~~~~d~~~ 137 (224)
T 2bdq_A 75 LRIMEEDILRAVELESDALVLGILTSN------NH------IDTEAIEQLLPATQ---GLPLVFHMA--FDVIPKSDQKK 137 (224)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCBCTT------SS------BCHHHHHHHHHHHT---TCCEEECGG--GGGSCTTTHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeECCC------CC------cCHHHHHHHHHHhC---CCeEEEECc--hhccCCcCHHH
Confidence 345566677889999999998653222 21 46788888887765 567766432 3433 33333
Q ss_pred HHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHH-cCcC
Q 017176 154 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALR-KGAH 231 (376)
Q Consensus 154 ~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~-~Gad 231 (376)
.+ ..+ .+.|++.|--||...... ..-..+.++++.+.. .+|-|+.-||| +.+.+.++++ +|++
T Consensus 138 al---e~L-~~lGv~rILTSG~~~~~~----------a~~g~~~L~~Lv~~a~~ri~Im~GgGV-~~~Ni~~l~~~tGv~ 202 (224)
T 2bdq_A 138 SI---DQL-VALGFTRILLHGSSNGEP----------IIENIKHIKALVEYANNRIEIMVGGGV-TAENYQYICQETGVK 202 (224)
T ss_dssp HH---HHH-HHTTCCEEEECSCSSCCC----------GGGGHHHHHHHHHHHTTSSEEEECSSC-CTTTHHHHHHHHTCC
T ss_pred HH---HHH-HHcCCCEEECCCCCCCCc----------HHHHHHHHHHHHHhhCCCeEEEeCCCC-CHHHHHHHHHhhCCC
Confidence 33 333 357999998887643100 011256666665532 36778888888 5567777775 8998
Q ss_pred eeEE
Q 017176 232 HVMV 235 (376)
Q Consensus 232 ~Vmi 235 (376)
-+=.
T Consensus 203 e~H~ 206 (224)
T 2bdq_A 203 QAHG 206 (224)
T ss_dssp EEEE
T ss_pred EEcc
Confidence 7764
|
| >3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=85.79 E-value=8.9 Score=33.88 Aligned_cols=130 Identities=7% Similarity=-0.033 Sum_probs=73.9
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC
Q 017176 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 143 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~ 143 (376)
.-++++|.+.-....+.++.+.+.++|||+||+.... . .++ ..++.+.++.+.+++ .++.++.=...
T Consensus 17 ~~klg~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~----~----~~~----~~~~~~~~~~~~l~~-~gl~i~~~~~~ 83 (257)
T 3lmz_A 17 PFHLGMAGYTFVNFDLDTTLKTLERLDIHYLCIKDFH----L----PLN----STDEQIRAFHDKCAA-HKVTGYAVGPI 83 (257)
T ss_dssp SSEEEECGGGGTTSCHHHHHHHHHHTTCCEEEECTTT----S----CTT----CCHHHHHHHHHHHHH-TTCEEEEEEEE
T ss_pred ceEEEEEEEeecCCCHHHHHHHHHHhCCCEEEEeccc----C----CCC----CCHHHHHHHHHHHHH-cCCeEEEEecc
Confidence 4467888765544467888899999999999998541 0 011 234555555555443 35544321111
Q ss_pred CCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE-ec-----CCC
Q 017176 144 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-NG-----GIN 217 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~-nG-----gI~ 217 (376)
.. ...+.+.+. ..++...|+..|.+|.+. -.+..+.+..++. ++.+.. |- -+.
T Consensus 84 -~~--~~~~~~~~~-i~~A~~lGa~~v~~~p~~----------------~~l~~l~~~a~~~-gv~l~lEn~~~~~~~~~ 142 (257)
T 3lmz_A 84 -YM--KSEEEIDRA-FDYAKRVGVKLIVGVPNY----------------ELLPYVDKKVKEY-DFHYAIHLHGPDIKTYP 142 (257)
T ss_dssp -EE--CSHHHHHHH-HHHHHHHTCSEEEEEECG----------------GGHHHHHHHHHHH-TCEEEEECCCTTCSSSC
T ss_pred -cc--CCHHHHHHH-HHHHHHhCCCEEEecCCH----------------HHHHHHHHHHHHc-CCEEEEecCCCcccccC
Confidence 11 223333332 234456899999998531 1255555555543 554432 21 256
Q ss_pred CHHHHHHHHH
Q 017176 218 TVDEVNAALR 227 (376)
Q Consensus 218 s~~da~~~l~ 227 (376)
+.+++.++++
T Consensus 143 ~~~~~~~ll~ 152 (257)
T 3lmz_A 143 DATDVWVHTK 152 (257)
T ss_dssp SHHHHHHHHT
T ss_pred CHHHHHHHHH
Confidence 8888888886
|
| >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* | Back alignment and structure |
|---|
Probab=85.78 E-value=1.6 Score=40.32 Aligned_cols=87 Identities=15% Similarity=0.177 Sum_probs=50.0
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEE-EecCCCCHHHHHHHH-
Q 017176 150 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFT-LNGGINTVDEVNAAL- 226 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi-~nGgI~s~~da~~~l- 226 (376)
+.+.+.+.+..++ +.|++.|.+-|.|......+..+ +.+.+...++.. .++||| +.|+..+.+.++.+.
T Consensus 20 D~~~l~~lv~~li-~~Gv~gl~~~GttGE~~~Ls~~E-------r~~v~~~~~~~~~gr~pvi~Gvg~~~t~~ai~la~~ 91 (291)
T 3a5f_A 20 DFDKLSELIEWHI-KSKTDAIIVCGTTGEATTMTETE-------RKETIKFVIDKVNKRIPVIAGTGSNNTAASIAMSKW 91 (291)
T ss_dssp CHHHHHHHHHHHH-HTTCCEEEESSGGGTGGGSCHHH-------HHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HcCCCEEEECccccChhhCCHHH-------HHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHH
Confidence 3444444444343 58999999988775432222111 123333333332 268887 556655555544333
Q ss_pred --HcCcCeeEEchHHhhCCc
Q 017176 227 --RKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 227 --~~Gad~VmiGRa~l~~P~ 244 (376)
+.|||+||+-...+..|.
T Consensus 92 a~~~Gadavlv~~P~y~~~s 111 (291)
T 3a5f_A 92 AESIGVDGLLVITPYYNKTT 111 (291)
T ss_dssp HHHTTCSEEEEECCCSSCCC
T ss_pred HHhcCCCEEEEcCCCCCCCC
Confidence 379999999888776663
|
| >1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A* | Back alignment and structure |
|---|
Probab=85.78 E-value=17 Score=33.29 Aligned_cols=123 Identities=17% Similarity=0.098 Sum_probs=74.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHH
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQ 153 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~ 153 (376)
-|.+.+.+-++.+.+.|.|+|=++.. +|+ +.. -..+.-.++++.+++.++- |.+-+ | . .++.+
T Consensus 17 iD~~~l~~lv~~li~~Gv~gl~~~Gt--------tGE-~~~--Ls~eEr~~v~~~~~~~~~g-viaGv--g--~-~~t~~ 79 (293)
T 1w3i_A 17 IDKEKLKIHAENLIRKGIDKLFVNGT--------TGL-GPS--LSPEEKLENLKAVYDVTNK-IIFQV--G--G-LNLDD 79 (293)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESST--------TTT-GGG--SCHHHHHHHHHHHHTTCSC-EEEEC--C--C-SCHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcc--------ccC-hhh--CCHHHHHHHHHHHHHHcCC-EEEec--C--C-CCHHH
Confidence 36788889999988999999988642 344 333 3456667788888777644 55432 2 2 23556
Q ss_pred HHHHHHHHhhcCCccEEEEccCccccCC-CCCCCCCCCCcccHHHHHHHHhhCCCCeEEE-e-----cCCCCHHHHHH
Q 017176 154 LCDFIYKVSSLSPTRHFIIHSRKALLNG-ISPAENRTIPPLKYEYYYALLRDFPDLTFTL-N-----GGINTVDEVNA 224 (376)
Q Consensus 154 ~~~~i~~~~e~~Gvd~I~vh~r~~~~~g-~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~-n-----GgI~s~~da~~ 224 (376)
.++. ++.+++.|+|++-+-.- .|.. .+ ...-++++.++.+.. ++||+. | |--.+++.+.+
T Consensus 80 ai~l-a~~A~~~Gadavlv~~P--~y~~~~s-------~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~~~~~~~ 146 (293)
T 1w3i_A 80 AIRL-AKLSKDFDIVGIASYAP--YYYPRMS-------EKHLVKYFKTLCEVS-PHPVYLYNYPTATGKDIDAKVAKE 146 (293)
T ss_dssp HHHH-HHHGGGSCCSEEEEECC--CSCSSCC-------HHHHHHHHHHHHHHC-SSCEEEEECHHHHSCCCCHHHHHH
T ss_pred HHHH-HHHHHhcCCCEEEEcCC--CCCCCCC-------HHHHHHHHHHHHhhC-CCCEEEEECchhhCcCCCHHHHHh
Confidence 6654 45667899999987632 1111 11 011145566666664 788764 4 33346676655
|
| >1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A* | Back alignment and structure |
|---|
Probab=85.75 E-value=2.1 Score=38.44 Aligned_cols=147 Identities=16% Similarity=0.168 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHCCCCEEEecCC--------------------------------------------C--CCccccC-CCC
Q 017176 78 NLAKATELANAYNYDEINLNCG--------------------------------------------C--PSPKVAG-HGC 110 (376)
Q Consensus 78 ~~~~aa~~~~~~G~d~IeiN~g--------------------------------------------c--P~~~v~r-~g~ 110 (376)
+..++|..++++|+|+|-+|.- | |-+..-. +++
T Consensus 26 dpv~aA~~ae~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~~lNlE~a~t~emi~ia~~~kP~~vtLVPE~r~e~TTeg 105 (243)
T 1m5w_A 26 DPVQAAFIAEQAGADGITVHLREDRRHITDRDVRILRQTLDTRMNLEMAVTEEMLAIAVETKPHFCCLVPEKRQEVTTEG 105 (243)
T ss_dssp CHHHHHHHHHTTTCSEEEEECCTTCSSSCHHHHHHHHHHCSSEEEEEECSSHHHHHHHHHHCCSEEEECCCCSSCSSCCS
T ss_pred CHHHHHHHHHHcCCCEEEeCCCCCcccCCHHHHHHHHHhcCCCEEeccCCCHHHHHHHHHcCCCEEEECCCCCCCcCCCc
Confidence 4567888999999999998753 1 2111112 333
Q ss_pred ccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCC
Q 017176 111 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190 (376)
Q Consensus 111 yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~ 190 (376)
|-.+..+.+.+.++++.+++ .++.|++-+-+ +.+. ++ ...+.|++.|.+|.+.-.... ...+ .
T Consensus 106 -Gldv~~~~~~l~~~i~~L~~-~GIrVSLFIDp------d~~q-i~----aA~~~GA~~IELhTG~Ya~a~-~~~~-~-- 168 (243)
T 1m5w_A 106 -GLDVAGQRDKMRDACKRLAD-AGIQVSLFIDA------DEEQ-IK----AAAEVGAPFIEIHTGCYADAK-TDAE-Q-- 168 (243)
T ss_dssp -CCCSGGGHHHHHHHHHHHHH-TTCEEEEEECS------CHHH-HH----HHHHTTCSEEEEECHHHHHCC-SHHH-H--
T ss_pred -chhHHhhHHHHHHHHHHHHH-CCCEEEEEeCC------CHHH-HH----HHHHhCcCEEEEechhhhcCC-Cchh-H--
Confidence 76777889999999999876 47777775433 1222 22 234699999999976421110 0000 0
Q ss_pred CcccHHHHH---HHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHhhCCc
Q 017176 191 PPLKYEYYY---ALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 191 ~~~~~~~v~---~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~ 244 (376)
..-++.+. +...+. ++-|=+--|+ |.+.+..+.. .+..=|-||.+++.+--
T Consensus 169 -~~el~~i~~aa~~A~~l-GL~VnAGHgL-~y~Nv~~ia~ip~i~ElnIGHaiia~Al 223 (243)
T 1m5w_A 169 -AQELARIAKAATFAASL-GLKVNAGHGL-TYHNVKAIAAIPEMHELNIGHAIIGRAV 223 (243)
T ss_dssp -HHHHHHHHHHHHHHHHT-TCEEEEESSC-CTTTHHHHHTCTTEEEEEECHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHc-CCEEecCCCC-CHHHHHHHhhCCCCeEEccCHHHHHHHH
Confidence 00022222 222232 6767666666 5666665555 67888999999887654
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=85.75 E-value=1.8 Score=40.00 Aligned_cols=69 Identities=7% Similarity=0.014 Sum_probs=45.9
Q ss_pred HHhhcCCccEEEEccCc----cccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEE
Q 017176 160 KVSSLSPTRHFIIHSRK----ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 235 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh~r~----~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vmi 235 (376)
+.++++|++.|++-... ....|.. .....+.+.++++.. ++|++.+.++.+.++++.+++.|||+| .
T Consensus 35 ~~~~~~Ga~~i~~~e~v~~~~~~~~G~~-------~~~~~~~i~~i~~~~-~~Pvi~~~~~~~~~~~~~~~~aGad~v-~ 105 (297)
T 2zbt_A 35 VIAEEAGAVAVMALERVPADIRAQGGVA-------RMSDPKIIKEIMAAV-SIPVMAKVRIGHFVEAMILEAIGVDFI-D 105 (297)
T ss_dssp HHHHHHTCSEEEECSSCHHHHHHTTCCC-------CCCCHHHHHHHHTTC-SSCEEEEEETTCHHHHHHHHHTTCSEE-E
T ss_pred HHHHHCCCcEEEeccccchHHHhhcCCc-------cCCCHHHHHHHHHhc-CCCeEEEeccCCHHHHHHHHHCCCCEE-e
Confidence 34457899998772111 0111211 011256777777654 899999988888899999999999999 4
Q ss_pred ch
Q 017176 236 GR 237 (376)
Q Consensus 236 GR 237 (376)
+.
T Consensus 106 ~~ 107 (297)
T 2zbt_A 106 ES 107 (297)
T ss_dssp EE
T ss_pred ee
Confidence 43
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=85.74 E-value=3 Score=38.83 Aligned_cols=82 Identities=17% Similarity=0.267 Sum_probs=0.0
Q ss_pred CCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCCCCHHHHHH
Q 017176 146 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNA 224 (376)
Q Consensus 146 ~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI~s~~da~~ 224 (376)
+..-+++.+.+.+..+++ .|++.|.+-|.|......+..+. .+.+..+++... ++|||+.-|-.+.+++.+
T Consensus 29 dg~iD~~~l~~lv~~li~-~Gv~Gl~v~GtTGE~~~Ls~~Er-------~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~ 100 (307)
T 3s5o_A 29 TAEVDYGKLEENLHKLGT-FPFRGFVVQGSNGEFPFLTSSER-------LEVVSRVRQAMPKNRLLLAGSGCESTQATVE 100 (307)
T ss_dssp TSCBCHHHHHHHHHHHTT-SCCSEEEESSGGGTGGGSCHHHH-------HHHHHHHHHTSCTTSEEEEECCCSSHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHH-cCCCEEEECccccchhhCCHHHH-------HHHHHHHHHHcCCCCcEEEecCCCCHHHHHH
Q ss_pred HHH----cCcCeeEE
Q 017176 225 ALR----KGAHHVMV 235 (376)
Q Consensus 225 ~l~----~Gad~Vmi 235 (376)
..+ .|||+||+
T Consensus 101 la~~A~~~Gadavlv 115 (307)
T 3s5o_A 101 MTVSMAQVGADAAMV 115 (307)
T ss_dssp HHHHHHHTTCSEEEE
T ss_pred HHHHHHHcCCCEEEE
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=85.66 E-value=1.6 Score=40.46 Aligned_cols=86 Identities=14% Similarity=0.146 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEe-cCCCCHHHHHHHH--
Q 017176 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLN-GGINTVDEVNAAL-- 226 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~n-GgI~s~~da~~~l-- 226 (376)
++.+.+.+..+ .+.|++.|.+-|.|......+..+ +.+.+...++.. .++|||+. |...+.+.++.+.
T Consensus 22 ~~~l~~lv~~l-i~~Gv~gl~v~GttGE~~~Lt~~E-------r~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a 93 (292)
T 3daq_A 22 LEALKAHVNFL-LENNAQAIIVNGTTAESPTLTTDE-------KELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQA 93 (292)
T ss_dssp HHHHHHHHHHH-HHTTCCEEEESSGGGTGGGSCHHH-------HHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHcCCCEEEECccccccccCCHHH-------HHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHH
Confidence 33444444433 368999999988765332222110 123333333332 36898865 4444444433322
Q ss_pred -HcCcCeeEEchHHhhCCc
Q 017176 227 -RKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 227 -~~Gad~VmiGRa~l~~P~ 244 (376)
+.|||+||+-...+..|.
T Consensus 94 ~~~Gadavlv~~P~y~~~~ 112 (292)
T 3daq_A 94 KALGADAIMLITPYYNKTN 112 (292)
T ss_dssp HHHTCSEEEEECCCSSCCC
T ss_pred HHcCCCEEEECCCCCCCCC
Confidence 279999999888777664
|
| >2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A* | Back alignment and structure |
|---|
Probab=85.55 E-value=7.3 Score=36.55 Aligned_cols=140 Identities=11% Similarity=0.218 Sum_probs=80.9
Q ss_pred CCCEEEEecC-CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017176 64 QHPIVLQIGG-SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 64 ~~p~~vQL~g-~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
..|++++|=+ .+.+. ++.+.++||+-|.+-.+ . -.++.+.+...++++...+ .++.|-.-+-
T Consensus 75 ~VPValHlDHg~~~e~----i~~ai~~GFtSVMiDgS-~-----------~p~eENi~~Tk~vv~~ah~-~gvsVEaELG 137 (323)
T 2isw_A 75 DIPICIHLDHGDTLES----VKMAIDLGFSSVMIDAS-H-----------HPFDENVRITKEVVAYAHA-RSVSVEAELG 137 (323)
T ss_dssp TSCEEEEEEEECSHHH----HHHHHHTTCSEEEECCT-T-----------SCHHHHHHHHHHHHHHHHT-TTCEEEEEES
T ss_pred CCcEEEECCCCCCHHH----HHHHHHcCCCeEEecCC-C-----------CCHHHHHHHHHHHHHHHHH-cCCeEEEEeC
Confidence 4456555533 23322 33445567777666432 1 1234566777777777654 2433333221
Q ss_pred -C-CCCC-------CccHHHHHHHHHHHhhcCCccEEEEccCccc--cCCCCCCCCCCCCc--ccHHHHHHHHhhCCCCe
Q 017176 143 -I-GVDD-------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL--LNGISPAENRTIPP--LKYEYYYALLRDFPDLT 209 (376)
Q Consensus 143 -~-g~~~-------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~--~~g~~~~~~~~~~~--~~~~~v~~~~~~~~~ip 209 (376)
+ |.++ ..+.++..+|+ ++.|+|.|.+.=++.. |+..+ .+. ++++.+.++.+.. ++|
T Consensus 138 ~vgg~Ed~v~~~~~yTdPeea~~Fv----~~TgvD~LAvaiGt~HG~Yk~~~------~p~~~L~~~~L~~I~~~~-~vp 206 (323)
T 2isw_A 138 TLGGIEEDVQNTVQLTEPQDAKKFV----ELTGVDALAVAIGTSHGAYKFKS------ESDIRLAIDRVKTISDLT-GIP 206 (323)
T ss_dssp CC----------CCCCCHHHHHHHH----HHHCCSEEEECSSCCSSSBCCCC----------CCCCHHHHHHHHHH-CSC
T ss_pred CccCCccCcccccccCCHHHHHHHH----HHHCCCEEEEecCccccccCCCC------CcccccCHHHHHHHHHHh-CCC
Confidence 1 1121 13466666654 4689999998766642 22101 134 6788888887765 899
Q ss_pred EEEecCCCCHHHHHHHHH-cCcC
Q 017176 210 FTLNGGINTVDEVNAALR-KGAH 231 (376)
Q Consensus 210 Vi~nGgI~s~~da~~~l~-~Gad 231 (376)
++.-|+=.-+++..+.+. .|-+
T Consensus 207 LVlHGgSsvp~~~~~~~~~~gg~ 229 (323)
T 2isw_A 207 LVMHGSSSVPKDVKDMINKYGGK 229 (323)
T ss_dssp EEECSCCCCCHHHHHHHHHTTCC
T ss_pred eEEECCCCCCHHHHHHHHHhccc
Confidence 999999988998888887 6654
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=85.40 E-value=1.7 Score=41.24 Aligned_cols=87 Identities=9% Similarity=0.075 Sum_probs=50.7
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEE-EecCCCCHHHHHHHH-
Q 017176 150 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFT-LNGGINTVDEVNAAL- 226 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi-~nGgI~s~~da~~~l- 226 (376)
+++.+.+.+..++ +.|++.|.+-|.|......+.. -+.+.+..+++.. .++||| +.|+..+.+.++.+.
T Consensus 50 D~~~l~~lv~~li-~~Gv~Gl~v~GtTGE~~~Ls~e-------Er~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~ 121 (343)
T 2v9d_A 50 DKPGTAALIDDLI-KAGVDGLFFLGSGGEFSQLGAE-------ERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQH 121 (343)
T ss_dssp CHHHHHHHHHHHH-HTTCSCEEESSTTTTGGGSCHH-------HHHHHHHHHHHHHTTSSCEEEECCSSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HcCCCEEEeCccccChhhCCHH-------HHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHH
Confidence 4444444444444 5899999998877543222211 1123333333332 368887 456665555544333
Q ss_pred --HcCcCeeEEchHHhhCCc
Q 017176 227 --RKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 227 --~~Gad~VmiGRa~l~~P~ 244 (376)
+.|||+||+-...+..|.
T Consensus 122 A~~~Gadavlv~~P~Y~~~s 141 (343)
T 2v9d_A 122 AQQAGADGIVVINPYYWKVS 141 (343)
T ss_dssp HHHHTCSEEEEECCSSSCCC
T ss_pred HHhcCCCEEEECCCCCCCCC
Confidence 379999999988876663
|
| >2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A | Back alignment and structure |
|---|
Probab=85.34 E-value=15 Score=33.56 Aligned_cols=122 Identities=12% Similarity=0.064 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 154 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~ 154 (376)
|.+.+.+-++.+.+.|.|+|=++.. +|+ +..| ..+.-.++++.+.+.++- |.+-+ .. .+..+.
T Consensus 17 D~~~l~~lv~~li~~Gv~gl~v~Gt--------tGE-~~~L--s~~Er~~v~~~~~~~~~g-vi~Gv----g~-~~t~~a 79 (286)
T 2r91_A 17 DPELFANHVKNITSKGVDVVFVAGT--------TGL-GPAL--SLQEKMELTDAATSAARR-VIVQV----AS-LNADEA 79 (286)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEETST--------TTT-GGGS--CHHHHHHHHHHHHHHCSS-EEEEC----CC-SSHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcc--------ccC-hhhC--CHHHHHHHHHHHHHHhCC-EEEee----CC-CCHHHH
Confidence 6788888899888999999988642 344 3333 455556677777666543 55532 22 234555
Q ss_pred HHHHHHHhhcCCccEEEEccCccccCC-CCCCCCCCCCcccHHHHHHHHhhCCCCeEEE-e-----cCCCCHHHHHH
Q 017176 155 CDFIYKVSSLSPTRHFIIHSRKALLNG-ISPAENRTIPPLKYEYYYALLRDFPDLTFTL-N-----GGINTVDEVNA 224 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~vh~r~~~~~g-~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~-n-----GgI~s~~da~~ 224 (376)
++. ++.+++.|+|++-+-.- .+.. .+ ...-++++.++.+.. ++||+. | |--.+++.+.+
T Consensus 80 i~l-a~~A~~~Gadavlv~~P--~y~~~~s-------~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~~~~~~~ 145 (286)
T 2r91_A 80 IAL-AKYAESRGAEAVASLPP--YYFPRLS-------ERQIAKYFRDLCSAV-SIPVFLYNYPAAVGRDVDARAAKE 145 (286)
T ss_dssp HHH-HHHHHHTTCSEEEECCS--CSSTTCC-------HHHHHHHHHHHHHHC-SSCEEEEECHHHHSSCCCHHHHHH
T ss_pred HHH-HHHHHhcCCCEEEEcCC--cCCCCCC-------HHHHHHHHHHHHHhc-CCCEEEEeChhhcCCCCCHHHHHh
Confidence 554 44567899999988642 1111 11 011245666777664 788864 4 33357777666
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=85.23 E-value=1.6 Score=40.33 Aligned_cols=87 Identities=13% Similarity=0.142 Sum_probs=49.5
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEE-ecCCCCHHHHHHHH-
Q 017176 150 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTL-NGGINTVDEVNAAL- 226 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~-nGgI~s~~da~~~l- 226 (376)
+++.+.+.+..++ +.|++.|.+-|.|......+..+ +.+.+...++.. .++|||+ .|+..+.+.++.+.
T Consensus 20 D~~~l~~lv~~li-~~Gv~gl~~~GttGE~~~Ls~~E-------r~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~ 91 (291)
T 3tak_A 20 DWKSLEKLVEWHI-EQGTNSIVAVGTTGEASTLSMEE-------HTQVIKEIIRVANKRIPIIAGTGANSTREAIELTKA 91 (291)
T ss_dssp CHHHHHHHHHHHH-HHTCCEEEESSTTTTGGGSCHHH-------HHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECccccccccCCHHH-------HHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHH
Confidence 3444444444443 68999999988765432222111 123333333332 3689875 45555544443322
Q ss_pred --HcCcCeeEEchHHhhCCc
Q 017176 227 --RKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 227 --~~Gad~VmiGRa~l~~P~ 244 (376)
+.|||+||+-...+..|.
T Consensus 92 a~~~Gadavlv~~P~y~~~~ 111 (291)
T 3tak_A 92 AKDLGADAALLVTPYYNKPT 111 (291)
T ss_dssp HHHHTCSEEEEECCCSSCCC
T ss_pred HHhcCCCEEEEcCCCCCCCC
Confidence 379999999988877664
|
| >3v5c_A Mandelate racemase/muconate lactonizing protein; enolase fold, galacturonate dehydratase, double Mg site, LYA; 1.53A {Paenibacillus SP} PDB: 3v5f_A* 3p3b_A* 3ops_A* 3n4f_A* 3qpe_A* | Back alignment and structure |
|---|
Probab=85.07 E-value=5.6 Score=38.33 Aligned_cols=129 Identities=7% Similarity=-0.063 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHHH
Q 017176 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQ 153 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 153 (376)
++++.+.|+...+.||..+-+..|.+.... +. ..+++.-.+.+++||+.+ +.++.|-..-+|+ .++
T Consensus 149 ~e~~~~~a~~~~~~Gf~~~KlKvg~~~~~~---~~-----~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~w~----~~~ 216 (392)
T 3v5c_A 149 VALMQEEAMQGYAKGQRHFKIKVGRGGRHM---PL-----WEGTKRDIAIVRGISEVAGPAGKIMIDANNAYN----LNL 216 (392)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEECCTTTTTS---CH-----HHHHHHHHHHHHHHHHHHCTTCCEEEECTTCCC----HHH
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCccc---cc-----cccHHHHHHHHHHHHHHcCCCCcEEeeCCCCcC----HHH
Confidence 466777777777889999999876532100 00 012456677888888865 5667776666664 334
Q ss_pred HHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhh----CCCCeEEEecCCCCHHHHHHHHH-c
Q 017176 154 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD----FPDLTFTLNGGINTVDEVNAALR-K 228 (376)
Q Consensus 154 ~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~----~~~ipVi~nGgI~s~~da~~~l~-~ 228 (376)
.+++ .+.+++.++.+|. . .++ .+++.++++.+. ...+||...=.+. ..++.++++ .
T Consensus 217 A~~~-~~~L~~~~l~~iE----e------------P~~-~d~~~~~~l~~~~~~~~~~ipIa~gE~~~-~~~~~~li~~~ 277 (392)
T 3v5c_A 217 TKEV-LAALSDVNLYWLE----A------------AFH-EDEALYEDLKEWLGQRGQNVLIADGEGLA-SPHLIEWATRG 277 (392)
T ss_dssp HHHH-HHHTTTSCCCEEE----C------------SSS-CCHHHHHHHHHHHHHHTCCCEEEECCSSC-CTTHHHHHHTT
T ss_pred HHHH-HHhcccCCCeEEe----C------------CCC-cCHHHHHHHHHhhccCCCCCcEECCCccc-HHHHHHHHHcC
Confidence 4444 4456777777765 1 011 124555555543 1367866655666 778888888 4
Q ss_pred CcCeeEE
Q 017176 229 GAHHVMV 235 (376)
Q Consensus 229 Gad~Vmi 235 (376)
.+|.|++
T Consensus 278 a~dii~~ 284 (392)
T 3v5c_A 278 RVDVLQY 284 (392)
T ss_dssp SCCEECC
T ss_pred CCcEEEe
Confidence 5888765
|
| >3pfr_A Mandelate racemase/muconate lactonizing protein; emolase superfamily fold, D-glucarate dehydratase, D-glucara isomerase; HET: GKR; 1.90A {Actinobacillus succinogenes} PDB: 3n6j_A 3n6h_A* 4gyp_C* | Back alignment and structure |
|---|
Probab=85.07 E-value=8.9 Score=37.73 Aligned_cols=123 Identities=7% Similarity=0.003 Sum_probs=75.6
Q ss_pred CCHHHHHHHHHHHHH-CCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccH
Q 017176 74 SNLDNLAKATELANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSY 151 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~-~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~ 151 (376)
.+|+++++.|+.+.+ .||..+-+..|.+ +++.-.+.|++||+.. ++.+.|-..-+|+ .
T Consensus 184 ~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~----------------~~~~Di~~v~avRea~pd~~L~vDaN~~w~----~ 243 (455)
T 3pfr_A 184 MDTQAVIELAAASKDRYGFKDFKLKGGVF----------------EGSKEIDTVIELKKHFPDARITLDPNGCWS----L 243 (455)
T ss_dssp CSHHHHHHHHHHHHHHHCCSCEEEECSSS----------------CHHHHHHHHHHHHHHCTTCCEEEECTTBSC----H
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEcCCCC----------------CHHHHHHHHHHHHHhCCCCeEeecCCCCCC----H
Confidence 478999888887654 6999998865432 2233356677777765 4455554444453 4
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCccc----HHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK----YEYYYALLRDFPDLTFTLNGGINTVDEVNAALR 227 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~----~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~ 227 (376)
++.+++ .+.+++. +.+|. . .+++-+ ++.++++.+.. ++||.+.=.+.+..++.++++
T Consensus 244 ~~A~~~-~~~L~~~-l~~iE----e------------P~~~~d~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~ 304 (455)
T 3pfr_A 244 DEAIQL-CKGLNDV-LTYAE----D------------PCIGENGYSGREIMAEFRRRT-GIPTATNMIATNWREMCHAIM 304 (455)
T ss_dssp HHHHHH-HTTCTTT-CSEEE----S------------CBCCBTTBCHHHHHHHHHHHH-CCCEEESSSCCSHHHHHHHHH
T ss_pred HHHHHH-HHhhccc-ceeee----c------------CCChhhccchHHHHHHHHhcC-CCCEEeCCCcCCHHHHHHHHH
Confidence 444443 3344444 54443 0 111212 45666776654 799888656788999999998
Q ss_pred -cCcCeeEE
Q 017176 228 -KGAHHVMV 235 (376)
Q Consensus 228 -~Gad~Vmi 235 (376)
..+|.+++
T Consensus 305 ~~a~di~~~ 313 (455)
T 3pfr_A 305 LQSVDIPLA 313 (455)
T ss_dssp HTCCSEEBC
T ss_pred cCCCCEEEe
Confidence 45787654
|
| >2bmb_A Folic acid synthesis protein FOL1; folate biosynthesis, transferase, ligase, multifunctional enzyme; HET: PMM; 2.3A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.01 E-value=1.5 Score=44.34 Aligned_cols=105 Identities=9% Similarity=0.048 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHHCC-----CCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhc-----ccCccEEEEecCC
Q 017176 75 NLDNLAKATELANAYN-----YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-----NTNVPVSVKCRIG 144 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G-----~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~-----~~~~pv~vKiR~g 144 (376)
+.+...+.|+...+.| +|.|||++-+. |.|.-.-+.....+.+..+|+++++ ..++|++|-+.-
T Consensus 247 ~~~~al~~a~~mv~~G~~~~~AdIIDIGgeST-----RPGa~~vs~eEEl~RvvpvI~~i~~~~~~~~~~vpISIDT~~- 320 (545)
T 2bmb_A 247 DIESQLNDIIKLCKDALYLHESVIIDVGGCST-----RPNSIQASEEEEIRRSIPLIKAIRESTELPQDKVILSIDTYR- 320 (545)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSCEEEEEECSCC-----STTCCCCCHHHHHHHHHHHHHHHHHCSSSCGGGEEEEEECCC-
T ss_pred CHHHHHHHHHHHHHcCCCCCCceEEEECCCCC-----CCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCeEEEeCCc-
Confidence 6777777777777789 99999986332 2221122233455667778888875 247788873221
Q ss_pred CCCCccHHHHHHHHHHHhhcCCccEEE-EccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEe
Q 017176 145 VDDHDSYNQLCDFIYKVSSLSPTRHFI-IHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN 213 (376)
Q Consensus 145 ~~~~~~~~~~~~~i~~~~e~~Gvd~I~-vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~n 213 (376)
.++++ .+-++|++.|. |+|... + + .+..++++.|++|+|..
T Consensus 321 -------a~Vae----aAl~aGadIINDVsg~~~--------d----~-----~m~~vva~~~~~~vVlm 362 (545)
T 2bmb_A 321 -------SNVAK----EAIKVGVDIINDISGGLF--------D----S-----NMFAVIAENPEICYILS 362 (545)
T ss_dssp -------HHHHH----HHHHTTCCEEEETTTTSS--------C----T-----THHHHHHTCTTSEEEEE
T ss_pred -------HHHHH----HHHHcCCCEEEeCCCCcC--------C----h-----HHHHHHHHhCCCeEEEE
Confidence 12222 22257999885 555431 0 0 12244555667888876
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=84.92 E-value=1.6 Score=40.65 Aligned_cols=86 Identities=14% Similarity=0.093 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEE-EecCCCCHHHHHHHH--
Q 017176 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFT-LNGGINTVDEVNAAL-- 226 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi-~nGgI~s~~da~~~l-- 226 (376)
++.+.+.+..++ +.|++.|.+-|.|......+..+ +.+.+...++.. .++||| +.|+..+.+.++.+.
T Consensus 20 ~~~l~~lv~~li-~~Gv~gi~v~GttGE~~~Ls~~E-------r~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A 91 (297)
T 2rfg_A 20 EKALAGLVDWQI-KHGAHGLVPVGTTGESPTLTEEE-------HKRVVALVAEQAQGRVPVIAGAGSNNPVEAVRYAQHA 91 (297)
T ss_dssp HHHHHHHHHHHH-HTTCSEEECSSGGGTGGGSCHHH-------HHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HcCCCEEEECccccchhhCCHHH-------HHHHHHHHHHHhCCCCeEEEccCCCCHHHHHHHHHHH
Confidence 444444444333 58999999988765432222111 123333333332 268886 566665555544333
Q ss_pred -HcCcCeeEEchHHhhCCc
Q 017176 227 -RKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 227 -~~Gad~VmiGRa~l~~P~ 244 (376)
+.|||+||+-...+..|.
T Consensus 92 ~~~Gadavlv~~P~y~~~s 110 (297)
T 2rfg_A 92 QQAGADAVLCVAGYYNRPS 110 (297)
T ss_dssp HHHTCSEEEECCCTTTCCC
T ss_pred HhcCCCEEEEcCCCCCCCC
Confidence 379999999988877664
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=84.76 E-value=1.2 Score=42.73 Aligned_cols=71 Identities=14% Similarity=0.212 Sum_probs=46.6
Q ss_pred HHhhcCCccEEEEccCccccCCCCCCCCCCCCcccH-HHHHHHHhhCCCCeEEEecCC---CCHHHHHHHHHcCcCeeEE
Q 017176 160 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY-EYYYALLRDFPDLTFTLNGGI---NTVDEVNAALRKGAHHVMV 235 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~-~~v~~~~~~~~~ipVi~nGgI---~s~~da~~~l~~Gad~Vmi 235 (376)
++.+..|+|++.+|--..... ..+...... -.| +.+.++++.. ++||++=| | .+++++..+.+.|||+|.+
T Consensus 162 ~~ve~~~adal~ihln~~qe~-~~p~Gd~~~--~~~~~~I~~l~~~~-~~PVivK~-vg~g~s~e~A~~l~~aGad~I~V 236 (365)
T 3sr7_A 162 QAVRDLQPLFLQVHINLMQEL-LMPEGEREF--RSWKKHLSDYAKKL-QLPFILKE-VGFGMDVKTIQTAIDLGVKTVDI 236 (365)
T ss_dssp HHHHHHCCSCEEEEECHHHHH-TSSSSCCCC--HHHHHHHHHHHHHC-CSCEEEEE-CSSCCCHHHHHHHHHHTCCEEEC
T ss_pred HHHHhcCCCEEEEeccccccc-cCCCCCCcH--HHHHHHHHHHHHhh-CCCEEEEE-CCCCCCHHHHHHHHHcCCCEEEE
Confidence 344567999999986532000 000000110 023 5677887765 89998874 6 7999999999999999988
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=84.59 E-value=24 Score=32.29 Aligned_cols=153 Identities=12% Similarity=0.113 Sum_probs=94.3
Q ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe
Q 017176 62 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 141 (376)
Q Consensus 62 ~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 141 (376)
....|+++.+.+++.++-.+.++.++++|+|++-+. .|... + ...+-+.+-.++|.+++++|+.+--
T Consensus 67 ~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~--~P~y~--~---------~s~~~l~~~f~~ia~a~~lPiilYn 133 (292)
T 2vc6_A 67 NGRVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIV--SPYYN--K---------PTQEGIYQHFKAIDAASTIPIIVYN 133 (292)
T ss_dssp TTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEE--CCCSS--C---------CCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred CCCCcEEEecCCccHHHHHHHHHHHHHcCCCEEEEc--CCCCC--C---------CCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 356799999999999999999999999999999885 34321 1 1346677777888888899998753
Q ss_pred ---cCCCCCCccHHHHHHHHHHHhh-cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCC
Q 017176 142 ---RIGVDDHDSYNQLCDFIYKVSS-LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGI 216 (376)
Q Consensus 142 ---R~g~~~~~~~~~~~~~i~~~~e-~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI 216 (376)
|.|.+- +.+.+ .++.+ .-.+-.|--..+. ...+.++++..+ ++.| .+|+=
T Consensus 134 ~P~~tg~~l--~~~~~----~~La~~~pnIvgiK~s~gd------------------~~~~~~~~~~~~~~f~v-~~G~d 188 (292)
T 2vc6_A 134 IPGRSAIEI--HVETL----ARIFEDCPNVKGVXDATGN------------------LLRPSLERMACGEDFNL-LTGED 188 (292)
T ss_dssp CHHHHSCCC--CHHHH----HHHHHHCTTEEEEEECSCC------------------THHHHHHHHHSCTTSEE-EESCG
T ss_pred CccccCcCC--CHHHH----HHHHhhCCCEEEEecCCCC------------------HHHHHHHHHHcCCCEEE-EECch
Confidence 233332 22222 23333 2234443322211 334445555443 4555 46631
Q ss_pred CCHHHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhC
Q 017176 217 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256 (376)
Q Consensus 217 ~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 256 (376)
+.+...+..|++|++.+.+-+ -|..+.+.++....|
T Consensus 189 ---~~~~~~l~~G~~G~is~~~n~-~P~~~~~l~~a~~~G 224 (292)
T 2vc6_A 189 ---GTALGYMAHGGHGCISVTANV-APALCADFQQACLNG 224 (292)
T ss_dssp ---GGHHHHHHTTCCEEEESGGGT-CHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHcCCCEEEecHHHh-CHHHHHHHHHHHHCC
Confidence 234556778999999988765 477765544444445
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=84.40 E-value=8.5 Score=34.96 Aligned_cols=123 Identities=11% Similarity=0.121 Sum_probs=70.7
Q ss_pred HHHHHH-hCCCcEEEecceeecccccccc-hhhhhhc-cCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCC
Q 017176 25 RTLARL-ISKHAWLYTEMLAAETIIYQQG-NLDRFLA-FSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCP 101 (376)
Q Consensus 25 r~~~~~-~Gg~gl~~te~v~~~~~~~~~~-~~~~~~~-~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP 101 (376)
.+++|+ .+|..++=.|.++.+.....+. .+.+..+ ..+++- .++=.+..++ ..+++++++|++.| .-.|.|
T Consensus 93 a~lare~~~~~~~iKlEv~~d~~~llpD~~~tv~aa~~L~~~Gf-~Vlpy~~dd~----~~akrl~~~G~~aV-mPlg~p 166 (265)
T 1wv2_A 93 CRLARELLDGHNLVKLEVLADQKTLFPNVVETLKAAEQLVKDGF-DVMVYTSDDP----IIARQLAEIGCIAV-MPLAGL 166 (265)
T ss_dssp HHHHHTTTTSCCEEEECCBSCTTTCCBCHHHHHHHHHHHHTTTC-EEEEEECSCH----HHHHHHHHSCCSEE-EECSSS
T ss_pred HHHHHHHcCCCCeEEEEeecCccccCcCHHHHHHHHHHHHHCCC-EEEEEeCCCH----HHHHHHHHhCCCEE-EeCCcc
Confidence 346788 8888899899888776544332 1111111 222333 3333355665 47788899999999 444555
Q ss_pred CccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccC
Q 017176 102 SPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 175 (376)
Q Consensus 102 ~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r 175 (376)
.. + |..+ .+++++..++ +..++||.+.=.+ .. .++.. +.+ +.|+|.+.|-..
T Consensus 167 IG----s---G~Gi-~~~~lI~~I~----e~~~vPVI~eGGI--~T---PsDAa----~Am-eLGAdgVlVgSA 218 (265)
T 1wv2_A 167 IG----S---GLGI-CNPYNLRIIL----EEAKVPVLVDAGV--GT---ASDAA----IAM-ELGCEAVLMNTA 218 (265)
T ss_dssp TT----C---CCCC-SCHHHHHHHH----HHCSSCBEEESCC--CS---HHHHH----HHH-HHTCSEEEESHH
T ss_pred CC----C---CCCc-CCHHHHHHHH----hcCCCCEEEeCCC--CC---HHHHH----HHH-HcCCCEEEEChH
Confidence 32 2 2223 3566665444 4467899885444 22 33332 233 479999988643
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=84.25 E-value=3.3 Score=37.99 Aligned_cols=110 Identities=15% Similarity=0.143 Sum_probs=59.9
Q ss_pred HHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccC--ccccCCCCC--------CCCCCCC
Q 017176 122 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR--KALLNGISP--------AENRTIP 191 (376)
Q Consensus 122 ~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r--~~~~~g~~~--------~~~~~~~ 191 (376)
+.+..+.+++.-...+..-+..|+.+.+ ...+.+ +.++++|+|.|.+--- .+...|..- ..+-. .
T Consensus 7 i~~~f~~~~~~~~~ali~yi~aGdP~~~---~~~~~~-~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~-~ 81 (271)
T 3nav_A 7 YQALFQRLSAAQQGAFVPFVTIGDPNPE---QSLAIM-QTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTT-P 81 (271)
T ss_dssp HHHHHHHHHHTTBCEEEEEEETTSSCHH---HHHHHH-HHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCC-H
T ss_pred HHHHHHHHHhcCCCeEEEEEeCCCCCHH---HHHHHH-HHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCC-H
Confidence 4455566554434456666677876543 344433 3456799999987521 111111000 00000 0
Q ss_pred cccHHHHHHHHhhCCCCeEEEecCCC-----CHH-HHHHHHHcCcCeeEEc
Q 017176 192 PLKYEYYYALLRDFPDLTFTLNGGIN-----TVD-EVNAALRKGAHHVMVG 236 (376)
Q Consensus 192 ~~~~~~v~~~~~~~~~ipVi~nGgI~-----s~~-da~~~l~~Gad~VmiG 236 (376)
.-.++.+.+++++.+++||+..|-.+ ..+ -++++.+.|+|+|.+.
T Consensus 82 ~~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIip 132 (271)
T 3nav_A 82 DICFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIA 132 (271)
T ss_dssp HHHHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEET
T ss_pred HHHHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEEC
Confidence 01156677777665689999876432 223 3455556999999994
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=84.11 E-value=0.69 Score=46.38 Aligned_cols=63 Identities=14% Similarity=0.121 Sum_probs=45.3
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCC-CeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD-LTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~-ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
.+.|++.+.++.... .. ...++.+..+++..++ +||+ .|+|.+.+++..+.+.|+|+|.+|.+
T Consensus 251 ~e~gv~~l~Vd~~~g----~~--------~~~~~~i~~lk~~~~~~~~Vi-~G~V~t~~~a~~l~~aGad~I~Vg~~ 314 (503)
T 1me8_A 251 VEAGADVLCIDSSDG----FS--------EWQKITIGWIREKYGDKVKVG-AGNIVDGEGFRYLADAGADFIKIGIG 314 (503)
T ss_dssp HHHTCSEEEECCSCC----CS--------HHHHHHHHHHHHHHGGGSCEE-EEEECSHHHHHHHHHHTCSEEEECSS
T ss_pred HhhhccceEEecccC----cc--------cchhhHHHHHHHhCCCCceEe-eccccCHHHHHHHHHhCCCeEEeccc
Confidence 356999998875321 10 1125556666666556 7877 69999999999999999999988763
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=84.07 E-value=5.1 Score=36.39 Aligned_cols=45 Identities=16% Similarity=0.091 Sum_probs=29.5
Q ss_pred HHHHHHHhhCCCCeEEEecCCC-----C-HHHHHHHHHcCcCeeEEchHHh
Q 017176 196 EYYYALLRDFPDLTFTLNGGIN-----T-VDEVNAALRKGAHHVMVGRAAY 240 (376)
Q Consensus 196 ~~v~~~~~~~~~ipVi~nGgI~-----s-~~da~~~l~~Gad~VmiGRa~l 240 (376)
+.+.++++..+++||++.+..+ . ...+..+.+.|+|+|.+--...
T Consensus 83 ~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~d~~~ 133 (268)
T 1qop_A 83 EMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPV 133 (268)
T ss_dssp HHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCG
T ss_pred HHHHHHHhcCCCCCEEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEcCCCH
Confidence 5567777764689998754322 1 3455666669999999864433
|
| >4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A* | Back alignment and structure |
|---|
Probab=84.02 E-value=2.7 Score=40.19 Aligned_cols=87 Identities=11% Similarity=0.025 Sum_probs=49.7
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEE-ecCCCCHHHHHHHH-
Q 017176 150 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTL-NGGINTVDEVNAAL- 226 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~-nGgI~s~~da~~~l- 226 (376)
+.+.+.+.+..+ .+.|++.|.+-|.|......+.. -+.+.+...++.. .++|||+ .|+..+.+.++.+.
T Consensus 78 D~~al~~lv~~l-i~~Gv~Gl~v~GTTGE~~~Ls~e-------Er~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~ 149 (360)
T 4dpp_A 78 DLEAYDDLVNIQ-IQNGAEGVIVGGTTGEGQLMSWD-------EHIMLIGHTVNCFGGSIKVIGNTGSNSTREAIHATEQ 149 (360)
T ss_dssp CHHHHHHHHHHH-HHTTCCEEEESSTTTTGGGSCHH-------HHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HHcCCCEEEecccccChhhCCHH-------HHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHH
Confidence 344444444444 36899999998876533222211 1123333333332 3689886 55555555444333
Q ss_pred --HcCcCeeEEchHHhhCCc
Q 017176 227 --RKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 227 --~~Gad~VmiGRa~l~~P~ 244 (376)
+.|||++++-...+..|.
T Consensus 150 A~~~Gadavlvv~PyY~k~s 169 (360)
T 4dpp_A 150 GFAVGMHAALHINPYYGKTS 169 (360)
T ss_dssp HHHTTCSEEEEECCCSSCCC
T ss_pred HHHcCCCEEEEcCCCCCCCC
Confidence 379999999877665553
|
| >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A* | Back alignment and structure |
|---|
Probab=83.82 E-value=31 Score=33.04 Aligned_cols=133 Identities=16% Similarity=0.095 Sum_probs=83.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHH
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQ 153 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~ 153 (376)
++.+...+.|+.++++|+|.|-...=-|-+. .+.|-+ + ...-.+++..+++..++|+..-+ -+..+++
T Consensus 153 es~e~a~~~a~~~k~aGa~~vk~q~fkprts---~~~f~g-l---~~egl~~L~~~~~~~Gl~~~te~----~d~~~~~- 220 (385)
T 3nvt_A 153 ESYEQVAAVAESIKAKGLKLIRGGAFKPRTS---PYDFQG-L---GLEGLKILKRVSDEYGLGVISEI----VTPADIE- 220 (385)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEECBSSCCCSS---TTSCCC-C---THHHHHHHHHHHHHHTCEEEEEC----CSGGGHH-
T ss_pred CCHHHHHHHHHHHHHcCCCeEEcccccCCCC---hHhhcC-C---CHHHHHHHHHHHHHcCCEEEEec----CCHHHHH-
Confidence 4678888899999999999998765444321 111211 1 12334566677777889987632 2222222
Q ss_pred HHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCC-CCHHHHHHHHH----c
Q 017176 154 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI-NTVDEVNAALR----K 228 (376)
Q Consensus 154 ~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI-~s~~da~~~l~----~ 228 (376)
+ +.+. +|++-|-+|+.. +++++.++.+ .+.||+..-|. .|.+++..+.+ .
T Consensus 221 ---~----l~~~-vd~lkIgs~~~~---------------n~~LL~~~a~--~gkPVilk~G~~~t~~e~~~Ave~i~~~ 275 (385)
T 3nvt_A 221 ---V----ALDY-VDVIQIGARNMQ---------------NFELLKAAGR--VDKPILLKRGLSATIEEFIGAAEYIMSQ 275 (385)
T ss_dssp ---H----HTTT-CSEEEECGGGTT---------------CHHHHHHHHT--SSSCEEEECCTTCCHHHHHHHHHHHHTT
T ss_pred ---H----HHhh-CCEEEECccccc---------------CHHHHHHHHc--cCCcEEEecCCCCCHHHHHHHHHHHHHc
Confidence 2 2356 999999887632 1556666554 38999998888 89988877665 5
Q ss_pred Cc-CeeEEchHHhhCC
Q 017176 229 GA-HHVMVGRAAYQNP 243 (376)
Q Consensus 229 Ga-d~VmiGRa~l~~P 243 (376)
|. +.+.+=||.-.-|
T Consensus 276 Gn~~i~L~~rG~s~yp 291 (385)
T 3nvt_A 276 GNGKIILCERGIRTYE 291 (385)
T ss_dssp TCCCEEEEECCBCCSC
T ss_pred CCCeEEEEECCCCCCC
Confidence 76 4555555554434
|
| >3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytopl periplasmic), drug target functions; 1.40A {Yersinia pestis} SCOP: c.1.12.7 PDB: 1igw_A | Back alignment and structure |
|---|
Probab=83.70 E-value=24 Score=34.32 Aligned_cols=157 Identities=11% Similarity=0.053 Sum_probs=90.1
Q ss_pred CCEEEEe---cCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcc---cCccEE
Q 017176 65 HPIVLQI---GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN---TNVPVS 138 (376)
Q Consensus 65 ~p~~vQL---~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~---~~~pv~ 138 (376)
.|+++-+ || ++....+.++.+.++|+.+|.|-=....+| |.|..++.-+-..+...+-|++++.+ .+.++.
T Consensus 153 lPviaD~DtGyG-~~~~v~~tv~~~~~aGaaGi~IEDq~~~~K--kCGh~~gk~lv~~~e~~~rI~Aa~~A~~~~~~d~~ 229 (435)
T 3lg3_A 153 LPIVADAEAGFG-GVLNAFELMKAMIEAGAAGVHFEDQLAAVK--KCGHMGGKVLVPTQEAIQKLVAARLAADVLGVPTL 229 (435)
T ss_dssp CCEEEECTTCSS-SHHHHHHHHHHHHHHTCSEEEEESBCGGGC--BCSTTCBCEECCHHHHHHHHHHHHHHHHHHTCCCE
T ss_pred CCeEEECCCCCC-CcHHHHHHHHHHHHcCCEEEEEecCCCCcc--ccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeE
Confidence 7888887 34 344678889999999999999975443233 23444444455666655555665543 255555
Q ss_pred EEecCCCCC----------------------------CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCC
Q 017176 139 VKCRIGVDD----------------------------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190 (376)
Q Consensus 139 vKiR~g~~~----------------------------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~ 190 (376)
|=-|..-.. ...+++.++... .+.+ |+|.|-+++....
T Consensus 230 IiARTDa~aa~l~~s~~d~rD~~fi~G~r~~eG~y~~~~gld~AI~Ra~-AY~~-GAD~if~E~~~~~------------ 295 (435)
T 3lg3_A 230 LIARTDADAADLLTSDCDPYDREFITGDRTAEGFFRTRAGIEQAISRGL-AYAP-YADLVWCETSTPD------------ 295 (435)
T ss_dssp EEEEECTTTCCEESCCCCGGGGGGEEEEECTTCCEEECCSHHHHHHHHH-HHGG-GCSEEEECCSSCC------------
T ss_pred EEEEcCCccccccccccccccchhhcccccccccccccCCHHHHHHHHH-HHHc-cCCEEEecCCCCC------------
Confidence 555553210 023666666543 4456 9999999875421
Q ss_pred CcccHHHHHH----HHhhCCCCeEEEecC-CCC------HHHHH----HHHHcCcCeeEEchHHhhC
Q 017176 191 PPLKYEYYYA----LLRDFPDLTFTLNGG-INT------VDEVN----AALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 191 ~~~~~~~v~~----~~~~~~~ipVi~nGg-I~s------~~da~----~~l~~Gad~VmiGRa~l~~ 242 (376)
.+.+.+ +...+|..++.+|.. .++ .+++. ++-+.|...|.++-+.+.-
T Consensus 296 ----~~ei~~f~~~v~~~~P~~~La~~~sPsfnw~~~~~d~~~~~f~~eLa~lG~~~v~~~la~~ra 358 (435)
T 3lg3_A 296 ----LALAKRFADAVHAQFPGKLLAYNCSPSFNWKKNLTDQQIASFQDELSAMGYKYQFITLAGIHS 358 (435)
T ss_dssp ----HHHHHHHHHHHHHHSTTCEEEEECCSSSCHHHHSCHHHHHHHHHHHHHTTEEEEEETTHHHHH
T ss_pred ----HHHHHHHHHHhccccCCeEEEeCCCCCccccccCCHHHHHHHHHHHHHcCCcEEEeCcHHHHH
Confidence 232323 323345444555543 344 33433 2333799999888766543
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A | Back alignment and structure |
|---|
Probab=83.65 E-value=2.4 Score=39.63 Aligned_cols=83 Identities=11% Similarity=-0.034 Sum_probs=48.5
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEE-ecCCCCHHHHHHHH-
Q 017176 150 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTL-NGGINTVDEVNAAL- 226 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~-nGgI~s~~da~~~l- 226 (376)
+++.+.+.+..++ +.|++.|.+-|.|......+.. -+.+.+...++.. .++|||+ .|+..+.+.++.+.
T Consensus 27 D~~~l~~lv~~li-~~Gv~gl~v~GtTGE~~~Ls~~-------Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~ 98 (309)
T 3fkr_A 27 DLASQKRAVDFMI-DAGSDGLCILANFSEQFAITDD-------ERDVLTRTILEHVAGRVPVIVTTSHYSTQVCAARSLR 98 (309)
T ss_dssp CHHHHHHHHHHHH-HTTCSCEEESSGGGTGGGSCHH-------HHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HcCCCEEEECccccCcccCCHH-------HHHHHHHHHHHHhCCCCcEEEecCCchHHHHHHHHHH
Confidence 3444444444443 6899999998876543222211 1123343333332 3699985 56666665554333
Q ss_pred --HcCcCeeEEchHHh
Q 017176 227 --RKGAHHVMVGRAAY 240 (376)
Q Consensus 227 --~~Gad~VmiGRa~l 240 (376)
+.|||+|++-...+
T Consensus 99 A~~~Gadavlv~~Pyy 114 (309)
T 3fkr_A 99 AQQLGAAMVMAMPPYH 114 (309)
T ss_dssp HHHTTCSEEEECCSCB
T ss_pred HHHcCCCEEEEcCCCC
Confidence 37999999988765
|
| >2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4 | Back alignment and structure |
|---|
Probab=83.37 E-value=5.9 Score=35.14 Aligned_cols=149 Identities=8% Similarity=0.085 Sum_probs=74.8
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccE-EEEecCC
Q 017176 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPV-SVKCRIG 144 (376)
Q Consensus 66 p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv-~vKiR~g 144 (376)
+++++........+.++.+.+.++|||+||+....|..... + + .+.+.+.+.++. .++.+ ++-....
T Consensus 8 ~lg~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~--~--~----~~~~~~~~~~~~----~gl~~~~~~~~~~ 75 (272)
T 2q02_A 8 RFCINRKIAPGLSIEAFFRLVKRLEFNKVELRNDMPSGSVT--D--D----LNYNQVRNLAEK----YGLEIVTINAVYP 75 (272)
T ss_dssp GEEEEGGGCTTSCHHHHHHHHHHTTCCEEEEETTSTTSSTT--T--T----CCHHHHHHHHHH----TTCEEEEEEEETT
T ss_pred hhhhcccccCCCCHHHHHHHHHHcCCCEEEeeccccccccc--c--c----cCHHHHHHHHHH----cCCeEEechhhhc
Confidence 35666554322346777888889999999998655531110 1 1 344555554443 34554 3332222
Q ss_pred CCCC--ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE-e-----cCC
Q 017176 145 VDDH--DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-N-----GGI 216 (376)
Q Consensus 145 ~~~~--~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~-n-----GgI 216 (376)
+... ...+.+.+ ...++.+.|++.|.+|++... . ..+.....-.+..+.+..++. ++.+.. | .-+
T Consensus 76 ~~~~~~~~~~~~~~-~i~~a~~lG~~~v~~~~g~~~---~--~~~~~~~~~~l~~l~~~a~~~-gv~l~~E~~~~~~~~~ 148 (272)
T 2q02_A 76 FNQLTEEVVKKTEG-LLRDAQGVGARALVLCPLNDG---T--IVPPEVTVEAIKRLSDLFARY-DIQGLVEPLGFRVSSL 148 (272)
T ss_dssp TTSCCHHHHHHHHH-HHHHHHHHTCSEEEECCCCSS---B--CCCHHHHHHHHHHHHHHHHTT-TCEEEECCCCSTTCSC
T ss_pred cCCcHHHHHHHHHH-HHHHHHHhCCCEEEEccCCCc---h--hHHHHHHHHHHHHHHHHHHHc-CCEEEEEecCCCcccc
Confidence 2221 11222222 233456789999999876421 0 111000000122223334443 555543 1 246
Q ss_pred CCHHHHHHHHH-cCcCeeE
Q 017176 217 NTVDEVNAALR-KGAHHVM 234 (376)
Q Consensus 217 ~s~~da~~~l~-~Gad~Vm 234 (376)
.+.+++.++++ .+ +.|.
T Consensus 149 ~~~~~~~~l~~~v~-~~~g 166 (272)
T 2q02_A 149 RSAVWAQQLIREAG-SPFK 166 (272)
T ss_dssp CCHHHHHHHHHHHT-CCCE
T ss_pred cCHHHHHHHHHHhC-cCeE
Confidence 78999988887 55 5433
|
| >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=83.33 E-value=1.8 Score=40.62 Aligned_cols=85 Identities=8% Similarity=-0.022 Sum_probs=48.2
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHH--
Q 017176 150 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAAL-- 226 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l-- 226 (376)
+++.+.+.+..++ +.|++.|.+-|-|......+.. -+.+.+...++.. .++|||+.-|- +.+++.+..
T Consensus 31 D~~~l~~lv~~li-~~Gv~Gl~v~GtTGE~~~Ls~e-------Er~~v~~~~v~~~~grvpViaGvg~-~t~~ai~la~~ 101 (316)
T 3e96_A 31 DWHHYKETVDRIV-DNGIDVIVPCGNTSEFYALSLE-------EAKEEVRRTVEYVHGRALVVAGIGY-ATSTAIELGNA 101 (316)
T ss_dssp CHHHHHHHHHHHH-TTTCCEECTTSGGGTGGGSCHH-------HHHHHHHHHHHHHTTSSEEEEEECS-SHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HcCCCEEEeCccccCcccCCHH-------HHHHHHHHHHHHhCCCCcEEEEeCc-CHHHHHHHHHH
Confidence 4444444444444 6999999998876533222211 1123344444332 36898855343 555544433
Q ss_pred --HcCcCeeEEchHHhhCC
Q 017176 227 --RKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 227 --~~Gad~VmiGRa~l~~P 243 (376)
+.|||+||+-...+..|
T Consensus 102 A~~~Gadavlv~~P~y~~~ 120 (316)
T 3e96_A 102 AKAAGADAVMIHMPIHPYV 120 (316)
T ss_dssp HHHHTCSEEEECCCCCSCC
T ss_pred HHhcCCCEEEEcCCCCCCC
Confidence 27999999987766544
|
| >3txv_A Probable tagatose 6-phosphate kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=82.99 E-value=13 Score=36.51 Aligned_cols=73 Identities=11% Similarity=0.097 Sum_probs=45.8
Q ss_pred HhhcCCcc-------EEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCe-EEE---ecCCCCHHHHHHHHHcC
Q 017176 161 VSSLSPTR-------HFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLT-FTL---NGGINTVDEVNAALRKG 229 (376)
Q Consensus 161 ~~e~~Gvd-------~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ip-Vi~---nGgI~s~~da~~~l~~G 229 (376)
.+.+.|+| .+.|..++.. |. ..++..+.+.+.++.+...++| ++. ++|=.+.+++.++.+.|
T Consensus 210 ~f~~~gld~~w~~v~~lvVqpGt~f--~~-----~~v~~y~~e~~~~L~~~v~~~P~LVlhghStDy~~~e~l~~~V~~G 282 (450)
T 3txv_A 210 AFEEAGAAGAFSRVVGAVVQPGVEF--GN-----ENVIAYDRARAEKLSATLGQLHGMVFEAHSTDYQTPDALRELVADG 282 (450)
T ss_dssp HHHHHTCHHHHTTEEEEECCCSCEE--CS-----SCEECCCTTTTSHHHHGGGTSTTCEEEESCCTTCCHHHHHHHHHTT
T ss_pred HHHHhCcccccCceeEEEecCCccc--CC-----CCCCCCCHHHHHHHHHHhccCCCEEEecCCCCCCCHHHHHHHHHcC
Confidence 34557886 7777777754 11 1122223333445554433677 665 44456778888999999
Q ss_pred cCeeEEchHHh
Q 017176 230 AHHVMVGRAAY 240 (376)
Q Consensus 230 ad~VmiGRa~l 240 (376)
..-+=||.++.
T Consensus 283 iaklNVgp~Lt 293 (450)
T 3txv_A 283 FAILKVGPGLT 293 (450)
T ss_dssp EEEEEECHHHH
T ss_pred CcEEEEChHHH
Confidence 99999998875
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=82.99 E-value=28 Score=31.90 Aligned_cols=153 Identities=16% Similarity=0.153 Sum_probs=94.5
Q ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe
Q 017176 62 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 141 (376)
Q Consensus 62 ~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 141 (376)
....|+++.+.+++.++-.+.++.++++|+|++-+- .|.-. + -..+-+.+-.++|.+++++|+.+--
T Consensus 74 ~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~--~P~y~--~---------~~~~~l~~~f~~va~a~~lPiilYn 140 (297)
T 3flu_A 74 AKRVPVIAGTGANNTVEAIALSQAAEKAGADYTLSV--VPYYN--K---------PSQEGIYQHFKTIAEATSIPMIIYN 140 (297)
T ss_dssp TTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEE--CCCSS--C---------CCHHHHHHHHHHHHHHCCSCEEEEE
T ss_pred CCCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEEC--CCCCC--C---------CCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 456799999999999999999999999999999884 45421 1 1345677788888888899998864
Q ss_pred ---cCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCCC
Q 017176 142 ---RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGIN 217 (376)
Q Consensus 142 ---R~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI~ 217 (376)
|.|.+- +.+ + +.++.+--.+-.|--..+ ++..+.++++... +.. +.+|+=
T Consensus 141 ~P~~tg~~l--~~~-~---~~~La~~pnivgiKdssg------------------d~~~~~~~~~~~~~~f~-v~~G~d- 194 (297)
T 3flu_A 141 VPGRTVVSM--TND-T---ILRLAEIPNIVGVKEASG------------------NIGSNIELINRAPEGFV-VLSGDD- 194 (297)
T ss_dssp CHHHHSSCC--CHH-H---HHHHTTSTTEEEEEECSC------------------CHHHHHHHHHHSCTTCE-EEECCG-
T ss_pred CCchhccCC--CHH-H---HHHHHcCCCEEEEEeCCC------------------CHHHHHHHHHhcCCCeE-EEECcH-
Confidence 233332 222 2 233432222333332211 1455556555442 444 455641
Q ss_pred CHHHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhC
Q 017176 218 TVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256 (376)
Q Consensus 218 s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 256 (376)
+.+...+..|++|+..+.+-+ -|..+.+.++....|
T Consensus 195 --~~~l~~l~~G~~G~is~~an~-~P~~~~~l~~a~~~G 230 (297)
T 3flu_A 195 --HTALPFMLCGGHGVITVAANA-APKLFADMCRAALQG 230 (297)
T ss_dssp --GGHHHHHHTTCCEEEESGGGT-CHHHHHHHHHHHHHT
T ss_pred --HHHHHHHhCCCCEEEechHhh-hHHHHHHHHHHHHCC
Confidence 234566778999999888765 477655544444445
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=82.72 E-value=11 Score=35.21 Aligned_cols=100 Identities=12% Similarity=0.012 Sum_probs=58.7
Q ss_pred CCCEEEEecC-CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccC----CCCccccc-cCCHHHHHHHHHHHhccc--Cc
Q 017176 64 QHPIVLQIGG-SNLDNLAKATELANAYNYDEINLNCGCPSPKVAG----HGCFGVSL-MLDPKFVGEAMSVIAANT--NV 135 (376)
Q Consensus 64 ~~p~~vQL~g-~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r----~g~yG~~l-~~~~~~~~eiv~~v~~~~--~~ 135 (376)
+.|+++-+.. .+.++..+.|+.++++|+|+|.++.+.......+ ...+|+.- ........+.++.+++.+ ++
T Consensus 211 ~~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~~~~~~~i 290 (336)
T 1f76_A 211 YVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRL 290 (336)
T ss_dssp CCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSS
T ss_pred cCceEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHHHHhCCCC
Confidence 6799999874 3567888899999999999999975422110000 01112110 001234457777777777 67
Q ss_pred cEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEc
Q 017176 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH 173 (376)
Q Consensus 136 pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh 173 (376)
||.. .-|+.+ .++..+ .+ ++|+|.|.+-
T Consensus 291 pVi~--~GGI~~---~~da~~----~l-~~GAd~V~ig 318 (336)
T 1f76_A 291 PIIG--VGGIDS---VIAARE----KI-AAGASLVQIY 318 (336)
T ss_dssp CEEE--ESSCCS---HHHHHH----HH-HHTCSEEEES
T ss_pred CEEE--ECCCCC---HHHHHH----HH-HCCCCEEEee
Confidence 7765 334443 334333 23 2689998764
|
| >3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=82.64 E-value=12 Score=36.45 Aligned_cols=101 Identities=10% Similarity=0.181 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHhcc---cC--ccEEEEecC------C-C---CCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCC
Q 017176 118 DPKFVGEAMSVIAAN---TN--VPVSVKCRI------G-V---DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGI 182 (376)
Q Consensus 118 ~~~~~~eiv~~v~~~---~~--~pv~vKiR~------g-~---~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~ 182 (376)
+.+.+.-++++|+++ ++ +.+.+-.-. | + ...-+.+++++++..++++.++.+|. .
T Consensus 217 ~~e~l~~i~~Air~agy~~G~dv~l~vD~aase~~~~g~Y~l~~~~~t~~eai~~~~~ll~~y~i~~IE--------d-- 286 (428)
T 3tqp_A 217 NEAAFELILEAIEDANYVPGKDIYLALDAASSELYQNGRYDFENNQLTSEEMIDRLTEWTKKYPVISIE--------D-- 286 (428)
T ss_dssp HHHHHHHHHHHHHHTTCCBTTTBEEEEECCGGGSEETTEECCSSSCBCHHHHHHHHHHHHHHSCEEEEE--------C--
T ss_pred HHHHHHHHHHHHHHhhcccCCceEEEEecchhhhccCCceeccccccCHHHHHHHHHHHHhhcccceEe--------C--
Confidence 444555668999987 53 444443310 0 0 01124567777766667788877665 1
Q ss_pred CCCCCCCCCcccHHHHHHHHhhCCCCeEEEecC---CCCHHHHHHHHH-cCcCeeEE
Q 017176 183 SPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG---INTVDEVNAALR-KGAHHVMV 235 (376)
Q Consensus 183 ~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGg---I~s~~da~~~l~-~Gad~Vmi 235 (376)
.+++-+|+..+++.+.. +.||-..|| +.++.++.++++ ..||.|++
T Consensus 287 ------Pl~~dD~eg~~~L~~~~-~~pI~ivGDel~vt~~~~~~~~i~~~a~d~i~i 336 (428)
T 3tqp_A 287 ------GLSENDWAGWKLLTERL-ENKVQLVGDDIFVTNPDILEKGIKKNIANAILV 336 (428)
T ss_dssp ------CSCTTCHHHHHHHHHHH-TTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEE
T ss_pred ------CCCcccHHHHHHHHHhc-CCCcceeccccccCCHHHHHHHHHhCCCCEEEe
Confidence 12233477777776654 444433455 459999999998 55888876
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=82.54 E-value=30 Score=31.84 Aligned_cols=153 Identities=15% Similarity=0.105 Sum_probs=94.4
Q ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe
Q 017176 62 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 141 (376)
Q Consensus 62 ~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 141 (376)
....|+++.+.+++.++-.+.++.++++|+|++-+- .|... + -..+-+.+-.++|.+++++|+.+--
T Consensus 79 ~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~--~P~y~--~---------~s~~~l~~~f~~va~a~~lPiilYn 145 (301)
T 1xky_A 79 DKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLV--APYYN--K---------PSQEGMYQHFKAIAESTPLPVMLYN 145 (301)
T ss_dssp TTSSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEE--CCCSS--C---------CCHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEc--CCCCC--C---------CCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 456799999999999999999999999999999875 35421 1 1346778888888888899998754
Q ss_pred ---cCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCCC
Q 017176 142 ---RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGIN 217 (376)
Q Consensus 142 ---R~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI~ 217 (376)
|.|.+- +.+ + +.++++.-.+-.|--..+ +...+.++++..+ ++. +.+|+=
T Consensus 146 ~P~~tg~~l--~~~-~---~~~La~~pnIvgiKdssg------------------d~~~~~~~~~~~~~~f~-v~~G~d- 199 (301)
T 1xky_A 146 VPGRSIVQI--SVD-T---VVRLSEIENIVAIKDAGG------------------DVLTMTEIIEKTADDFA-VYSGDD- 199 (301)
T ss_dssp CHHHHSSCC--CHH-H---HHHHHTSTTEEEEEECSS------------------CHHHHHHHHHHSCTTCE-EEESSG-
T ss_pred CccccCCCC--CHH-H---HHHHHcCCCEEEEEcCCC------------------CHHHHHHHHHhcCCCeE-EEECcH-
Confidence 334332 222 2 223333223333332221 1444555555443 343 456642
Q ss_pred CHHHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhC
Q 017176 218 TVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256 (376)
Q Consensus 218 s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 256 (376)
+.+...+..|++|++.+.+-+ -|..+.+.++....|
T Consensus 200 --~~~l~~l~~G~~G~is~~an~-~P~~~~~l~~a~~~G 235 (301)
T 1xky_A 200 --GLTLPAMAVGAKGIVSVASHV-IGNEMQEMIAAFQAG 235 (301)
T ss_dssp --GGHHHHHHTTCCEEEESTHHH-HHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHcCCCEEEcCHHHh-CHHHHHHHHHHHHCC
Confidence 235556678999999988765 466554444443445
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=82.52 E-value=6.6 Score=36.04 Aligned_cols=104 Identities=9% Similarity=0.033 Sum_probs=58.0
Q ss_pred HHHHHHHhc-ccCccEEEEecCCCCCCccHHHHHHHHHHHhhc-CCccEEEEccCcccc-CCCCCCCCCCCCcccHHHHH
Q 017176 123 GEAMSVIAA-NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSL-SPTRHFIIHSRKALL-NGISPAENRTIPPLKYEYYY 199 (376)
Q Consensus 123 ~eiv~~v~~-~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~-~Gvd~I~vh~r~~~~-~g~~~~~~~~~~~~~~~~v~ 199 (376)
.++++.+++ ..+.|+.+-+..+ +.++..+. ++.+++ +|+|+|.+|-..... .|. ...-..+....+.+.
T Consensus 86 ~~~~~~~~~~~~~~p~~v~l~~~-----~~~~~~~~-a~~~~~~~g~d~iei~~~~p~~~~g~--~~~g~~~~~~~eii~ 157 (311)
T 1ep3_A 86 TEKLPWLNENFPELPIIANVAGS-----EEADYVAV-CAKIGDAANVKAIELNISCPNVKHGG--QAFGTDPEVAAALVK 157 (311)
T ss_dssp HTHHHHHHHHCTTSCEEEEECCS-----SHHHHHHH-HHHHTTSTTEEEEEEECCSEEGGGTT--EEGGGCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEEcCC-----CHHHHHHH-HHHHhccCCCCEEEEeCCCCCCCCch--hhhcCCHHHHHHHHH
Confidence 345666665 3377888766542 23333333 345556 899999998543211 110 000000111245566
Q ss_pred HHHhhCCCCeEEE--ecCCCCHHH-HHHHHHcCcCeeEE
Q 017176 200 ALLRDFPDLTFTL--NGGINTVDE-VNAALRKGAHHVMV 235 (376)
Q Consensus 200 ~~~~~~~~ipVi~--nGgI~s~~d-a~~~l~~Gad~Vmi 235 (376)
++++.. ++||+. ..++.+..+ +..+.+.|+|+|.+
T Consensus 158 ~v~~~~-~~pv~vk~~~~~~~~~~~a~~l~~~G~d~i~v 195 (311)
T 1ep3_A 158 ACKAVS-KVPLYVKLSPNVTDIVPIAKAVEAAGADGLTM 195 (311)
T ss_dssp HHHHHC-SSCEEEEECSCSSCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHhc-CCCEEEEECCChHHHHHHHHHHHHcCCCEEEE
Confidence 666554 788875 346667666 44455599999998
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=82.42 E-value=3.2 Score=38.87 Aligned_cols=84 Identities=15% Similarity=0.103 Sum_probs=47.8
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEE-ecCCCCHHHHHHHH-
Q 017176 150 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTL-NGGINTVDEVNAAL- 226 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~-nGgI~s~~da~~~l- 226 (376)
+++.+.+.+..+ .+.|++.|.+-|.|......+.. -+.+.+...++.. .++|||+ .|+..+.+.++.+.
T Consensus 30 D~~~l~~lv~~l-i~~Gv~gl~v~GtTGE~~~Ls~~-------Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~ 101 (318)
T 3qfe_A 30 DLASQERYYAYL-ARSGLTGLVILGTNAEAFLLTRE-------ERAQLIATARKAVGPDFPIMAGVGAHSTRQVLEHIND 101 (318)
T ss_dssp CHHHHHHHHHHH-HTTTCSEEEESSGGGTGGGSCHH-------HHHHHHHHHHHHHCTTSCEEEECCCSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HHcCCCEEEeCccccChhhCCHH-------HHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHH
Confidence 344444444444 36899999999877543222211 1123333333332 3689874 55555555544333
Q ss_pred --HcCcCeeEEchHHhh
Q 017176 227 --RKGAHHVMVGRAAYQ 241 (376)
Q Consensus 227 --~~Gad~VmiGRa~l~ 241 (376)
+.|||+|++-...+.
T Consensus 102 a~~~Gadavlv~~P~y~ 118 (318)
T 3qfe_A 102 ASVAGANYVLVLPPAYF 118 (318)
T ss_dssp HHHHTCSEEEECCCCC-
T ss_pred HHHcCCCEEEEeCCccc
Confidence 379999999888554
|
| >1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ... | Back alignment and structure |
|---|
Probab=82.37 E-value=1.3 Score=41.22 Aligned_cols=60 Identities=15% Similarity=0.190 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEE
Q 017176 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 140 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vK 140 (376)
++...+.|+...+.|+|.|||++-+- |.|.-.-+.....+.+..+++++++.+++|++|-
T Consensus 62 ~~~a~~~a~~~v~~GAdiIDIGgeSt-----rPga~~v~~~eE~~RvvpvI~~l~~~~~vpiSID 121 (297)
T 1tx2_A 62 VDAAVRHAKEMRDEGAHIIDIGGEST-----RPGFAKVSVEEEIKRVVPMIQAVSKEVKLPISID 121 (297)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEESCC---------CCCCCHHHHHHHHHHHHHHHHHHSCSCEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCcC-----CCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEEe
Confidence 45666666777789999999997442 1111111223344556677788887778999884
|
| >3qn3_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, glycolysis, lyase; 2.13A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=82.36 E-value=8.3 Score=37.56 Aligned_cols=70 Identities=14% Similarity=0.157 Sum_probs=47.9
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCCCC-HHHHHHHHH
Q 017176 150 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINT-VDEVNAALR 227 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI~s-~~da~~~l~ 227 (376)
+.+++++++..++++.++.+|. . .+++-+|+..+++.+... ++||++.=-+.| +.++.++++
T Consensus 262 t~~eai~~~~~ll~~y~i~~IE--------d--------Pl~~dD~e~~~~L~~~~g~~ipI~gDE~~~tn~~~~~~~i~ 325 (417)
T 3qn3_A 262 SSEALIERYVELCAKYPICSIE--------D--------GLAENDFEGWIKLTEKLGNKIQLVGDDLFVTNEDILREGII 325 (417)
T ss_dssp CHHHHHHHHHHHHHHSCEEEEE--------S--------SSCTTCHHHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhcceeEEe--------c--------CCCcccHHHHHHHHHhhCCCCceecCCcccCCHHHHHHHHH
Confidence 3567777777767888877665 1 112234777777776643 588776555666 999999998
Q ss_pred -cCcCeeEE
Q 017176 228 -KGAHHVMV 235 (376)
Q Consensus 228 -~Gad~Vmi 235 (376)
..||.|++
T Consensus 326 ~~a~d~i~i 334 (417)
T 3qn3_A 326 KKMANAVLI 334 (417)
T ss_dssp HTCCSEEEE
T ss_pred hCCCCEEEe
Confidence 56888876
|
| >3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=82.31 E-value=6.8 Score=35.98 Aligned_cols=37 Identities=8% Similarity=0.077 Sum_probs=30.6
Q ss_pred CCCCEEEEecCCCHH---HHHHHHHHHHHCCCCEEEecCC
Q 017176 63 EQHPIVLQIGGSNLD---NLAKATELANAYNYDEINLNCG 99 (376)
Q Consensus 63 ~~~p~~vQL~g~~~~---~~~~aa~~~~~~G~d~IeiN~g 99 (376)
...++++|++.-... .+.++.+.+.++||++||+...
T Consensus 19 ~~~~~g~~~~s~~~~~~~~l~~~l~~aa~~G~~~VEl~~~ 58 (305)
T 3obe_A 19 AGKKMGLQTYSLGQELLQDMPNGLNRLAKAGYTDLEIFGY 58 (305)
T ss_dssp CCCCCEEEGGGGTHHHHTTHHHHHHHHHHHTCCEEEECCB
T ss_pred cCCceEEEEEEchhhhhcCHHHHHHHHHHcCCCEEEeccc
Confidence 456899999876554 7888999999999999999753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 376 | ||||
| d1vhna_ | 305 | c.1.4.1 (A:) Putative flavin oxidoreducatase TM009 | 7e-33 | |
| d1ep3a_ | 311 | c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactoco | 6e-19 | |
| d1gtea2 | 312 | c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenas | 8e-10 | |
| d1ps9a1 | 330 | c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-ter | 3e-05 | |
| d1djqa1 | 340 | c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N- | 8e-04 |
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Score = 122 bits (307), Expect = 7e-33
Identities = 67/319 (21%), Positives = 128/319 (40%), Gaps = 27/319 (8%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
+APM +TD+ +RTLA + ++EM++A+ + + L P + + +Q
Sbjct: 3 VGLAPMAGYTDSAFRTLAFEWGAD-FAFSEMVSAKGFLMNSQKTEELL-PQPHERNVAVQ 60
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
I GS + L++A + + Y I+LN GCP KV G G L D + + +
Sbjct: 61 IFGSEPNELSEAARILS-EKYKWIDLNAGCPVRKVVKEGAGGALLK-DLRHFRYIVRELR 118
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ + SVK R+G + ++ + IH+R + +
Sbjct: 119 KSVSGKFSVKTRLGWEKNEVEEIYRILVE-----EGVDEVFIHTRTVVQS---------- 163
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPWYTLGH 249
+ AL + ++G I T ++ AL + G ++V R A PW
Sbjct: 164 -FTGRAEWKALSVLEKRIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPW-IFKQ 221
Query: 250 VDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLF 309
+ + S +R +++ ++ + + ++ T G R V ++ K L + G F
Sbjct: 222 IKDFLRSGKYSEPSREEILRTFERHLELLIKTKG-ERKAVVEMRKFLAGYTKDLKGARRF 280
Query: 310 KRKADAAFQTCKTVKSFLE 328
+ K + V+ E
Sbjct: 281 REK----VMKIEEVQILKE 295
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Score = 84.3 bits (207), Expect = 6e-19
Identities = 43/217 (19%), Positives = 75/217 (34%), Gaps = 12/217 (5%)
Query: 34 HAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATE-LANAYNYD 92
L L + +L + + PI+ + GS + + +A N
Sbjct: 68 SGMLNAIGLQNPGLEVIMTEKLPWLNENFPELPIIANVAGSEEADYVAVCAKIGDAANVK 127
Query: 93 EINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYN 152
I LN CP+ K G DP+ + A + VP+ VK V D
Sbjct: 128 AIELNISCPNVKHGGQAF-----GTDPEVAAALVKACKAVSKVPLYVKLSPNVTDIVPIA 182
Query: 153 QLC-----DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD 207
+ D + +++L R + + L N I P+ + + + +D
Sbjct: 183 KAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVD- 241
Query: 208 LTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244
+ GG+ +V GA V VG A + +P+
Sbjct: 242 IPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPF 278
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Score = 56.9 bits (136), Expect = 8e-10
Identities = 37/221 (16%), Positives = 66/221 (29%), Gaps = 14/221 (6%)
Query: 36 WLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEIN 95
+L E+++ +T Y ++ A P+ I + N ++ + + A A D +
Sbjct: 75 FLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALE 134
Query: 96 LNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLC 155
LN CP + DP+ V + +P K V D S +
Sbjct: 135 LNLSCPHGMGERGMGL--ACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAA 192
Query: 156 -----------DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD 204
+ + + L I P+ + R
Sbjct: 193 KEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARA 252
Query: 205 FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA-YQNPW 244
P GGI++ + L GA + V A Q+
Sbjct: 253 LPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFT 293
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 330 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 43.0 bits (100), Expect = 3e-05
Identities = 18/136 (13%), Positives = 39/136 (28%), Gaps = 2/136 (1%)
Query: 110 CFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDS-YNQLCDFIYKVSSLSPTR 168
+G +F E + + + R+ + D + + ++
Sbjct: 182 QWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAG 241
Query: 169 HFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK 228
II++ P +P + + L+ L IN + L +
Sbjct: 242 ATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDILSR 301
Query: 229 G-AHHVMVGRAAYQNP 243
G A V + R +
Sbjct: 302 GDADMVSMARPFLADA 317
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 340 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Score = 38.8 bits (89), Expect = 8e-04
Identities = 20/152 (13%), Positives = 41/152 (26%), Gaps = 5/152 (3%)
Query: 97 NCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 156
+G SL +F E + + ++ R GVD Q+
Sbjct: 177 LQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEA 236
Query: 157 FIYKVSSLSPTRHFI----IHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL 212
+ + + I G +R + L++
Sbjct: 237 EVDGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLG 296
Query: 213 NGGINTVDEVNAALRKG-AHHVMVGRAAYQNP 243
G +++ + KG A + R + +P
Sbjct: 297 VGRYTDPEKMIEIVTKGYADIIGCARPSIADP 328
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 376 | |||
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 100.0 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 100.0 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 100.0 | |
| d1djqa1 | 340 | Trimethylamine dehydrogenase, N-terminal domain {M | 100.0 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 99.97 | |
| d1gwja_ | 374 | Morphinone reductase {Pseudomonas putida [TaxId: 3 | 99.96 | |
| d1oyaa_ | 399 | Old yellow enzyme (OYE) {Lager yeast (Saccharomyce | 99.96 | |
| d1icpa_ | 364 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 99.95 | |
| d1ep3a_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 99.95 | |
| d1q45a_ | 380 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 99.95 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 99.94 | |
| d1juba_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 99.85 | |
| d2b4ga1 | 312 | Dihydroorotate dehydrogenase {Trypanosoma brucei [ | 99.79 | |
| d1tv5a1 | 409 | Dihydroorotate dehydrogenase {Plasmodium falciparu | 99.76 | |
| d1f76a_ | 336 | Dihydroorotate dehydrogenase {Escherichia coli [Ta | 99.75 | |
| d1d3ga_ | 367 | Dihydroorotate dehydrogenase {Human (Homo sapiens) | 99.74 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 99.49 | |
| d1tb3a1 | 349 | Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI | 99.35 | |
| d1vcfa1 | 310 | Isopentenyl-diphosphate delta-isomerase {Thermus t | 99.34 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 99.16 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 99.14 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 99.14 | |
| d1goxa_ | 359 | Glycolate oxidase {Spinach (Spinacia oleracea) [Ta | 99.11 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 99.09 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 99.07 | |
| d1p4ca_ | 353 | Membrane-associated (S)-mandelate dehydrogenase {P | 99.07 | |
| d1kbia1 | 414 | Flavocytochrome b2, C-terminal domain {Baker's yea | 99.04 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 98.92 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 98.85 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 98.73 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 98.5 | |
| d1ea0a2 | 771 | Alpha subunit of glutamate synthase, central and F | 98.34 | |
| d1wv2a_ | 243 | Thiazole biosynthesis protein ThiG {Pseudomonas ae | 98.25 | |
| d1znna1 | 254 | Pyridoxal biosynthesis lyase PdxS {Bacillus stearo | 98.24 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.07 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.02 | |
| d1ofda2 | 809 | Alpha subunit of glutamate synthase, central and F | 98.02 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.01 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.01 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 98.0 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 97.97 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 97.96 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 97.93 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 97.84 | |
| d1mzha_ | 225 | Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli | 97.68 | |
| d1ub3a_ | 211 | Deoxyribose-phosphate aldolase DeoC {Thermus therm | 97.67 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 97.64 | |
| d2flia1 | 217 | D-ribulose-5-phosphate 3-epimerase {Streptococcus | 97.49 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 97.46 | |
| d1o0ya_ | 251 | Deoxyribose-phosphate aldolase DeoC {Thermotoga ma | 97.46 | |
| d1n7ka_ | 234 | Deoxyribose-phosphate aldolase DeoC {Archaeon Aero | 97.42 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.34 | |
| d2gl5a1 | 278 | Putative dehydratase protein STM2273 {Salmonella t | 97.32 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 97.28 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.25 | |
| d1h1ya_ | 220 | D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa | 97.24 | |
| d1xi3a_ | 206 | Thiamin phosphate synthase {Archaeon (Pyrococcus f | 97.2 | |
| d1rpxa_ | 230 | D-ribulose-5-phosphate 3-epimerase {Potato (Solanu | 97.13 | |
| d1i4na_ | 251 | Indole-3-glycerophosphate synthase, IPGS {Thermoto | 97.1 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.08 | |
| d1rvka1 | 255 | Hypothetical protein Atu3453 {Agrobacterium tumefa | 97.05 | |
| d1ujpa_ | 271 | Trp synthase alpha-subunit {Thermus thermophilus [ | 97.02 | |
| d1piia2 | 254 | Indole-3-glycerophosphate synthase, IPGS {Escheric | 96.95 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 96.95 | |
| d2chra1 | 244 | Chlormuconate cycloisomerase {Alcaligenes eutrophu | 96.91 | |
| d2tpsa_ | 226 | Thiamin phosphate synthase {Bacillus subtilis [Tax | 96.9 | |
| d1p1xa_ | 250 | Deoxyribose-phosphate aldolase DeoC {Escherichia c | 96.84 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 96.82 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 96.76 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 96.75 | |
| d1hg3a_ | 224 | Triosephosphate isomerase {Archaeon Pyrococcus woe | 96.66 | |
| d1tzza1 | 247 | Hypothetical protein Bll6730 {Bradyrhizobium japon | 96.55 | |
| d1tqja_ | 221 | D-ribulose-5-phosphate 3-epimerase {Synechocystis | 96.43 | |
| d1tqxa_ | 221 | D-ribulose-5-phosphate 3-epimerase {Plasmodium fal | 96.41 | |
| d1yeya1 | 252 | RTS beta protein {Xanthomonas campestris pv. campe | 96.38 | |
| d1w0ma_ | 226 | Triosephosphate isomerase {Thermoproteus tenax [Ta | 96.35 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 96.32 | |
| d1w3ia_ | 293 | 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus | 96.31 | |
| d1muca1 | 242 | Muconate-lactonizing enzyme {Pseudomonas putida [T | 96.26 | |
| d1ojxa_ | 251 | Archaeal fructose 1,6-bisphosphate aldolase {Archa | 96.17 | |
| d1jpma1 | 234 | L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: | 96.16 | |
| d1nu5a1 | 243 | Chlormuconate cycloisomerase {Pseudomonas sp. p51 | 96.11 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 96.07 | |
| d1muma_ | 289 | 2-methylisocitrate lyase {Escherichia coli [TaxId: | 96.05 | |
| d1f74a_ | 293 | N-acetylneuraminate lyase {Haemophilus influenzae | 95.99 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 95.95 | |
| d1vcva1 | 226 | Deoxyribose-phosphate aldolase DeoC {Archaeon Pyro | 95.91 | |
| d1viza_ | 229 | PcrB protein homolog YerE {Bacillus subtilis [TaxI | 95.82 | |
| d2f6ua1 | 231 | (S)-3-O-geranylgeranylglyceryl phosphate synthase | 95.56 | |
| d2mnra1 | 227 | Mandelate racemase {Pseudomonas putida [TaxId: 303 | 95.39 | |
| d2a4aa1 | 256 | Fructose-1,6-bisphosphate aldolase {Plasmodium yoe | 95.34 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 95.32 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 95.16 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 95.16 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 95.05 | |
| d2czda1 | 206 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 95.0 | |
| d1wufa1 | 244 | N-acylamino acid racemase {Listeria innocua [TaxId | 94.95 | |
| d1q6oa_ | 213 | 3-keto-L-gulonate 6-phosphate decarboxylase {Esche | 94.65 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 94.61 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 94.52 | |
| d1to3a_ | 291 | Putative aldolase YihT {Salmonella typhimurium [Ta | 94.47 | |
| d1gqna_ | 252 | Type I 3-dehydroquinate dehydratase {Salmonella ty | 94.4 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 94.37 | |
| d1sjda1 | 242 | N-acylamino acid racemase {Amycolatopsis sp. [TaxI | 94.34 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 94.21 | |
| d1r0ma1 | 243 | N-acylamino acid racemase {Deinococcus radiodurans | 94.2 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 94.15 | |
| d2gdqa1 | 256 | Hypothetical protein YitF {Bacillus subtilis [TaxI | 93.8 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 93.67 | |
| d1o66a_ | 260 | Ketopantoate hydroxymethyltransferase PanB {Neisse | 93.42 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 93.34 | |
| d1km4a_ | 212 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 93.24 | |
| d1wuea1 | 241 | N-acylamino acid racemase {Enterococcus faecalis [ | 92.93 | |
| d1v5xa_ | 200 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {T | 92.82 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 92.76 | |
| d2p10a1 | 197 | Uncharacterized protein Mll9387 {Mesorhizobium lot | 92.73 | |
| d1hl2a_ | 295 | N-acetylneuraminate lyase {Escherichia coli [TaxId | 92.18 | |
| d1rvga_ | 305 | Fructose-bisphosphate aldolase (FBP aldolase) {The | 92.09 | |
| d1ykwa1 | 283 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {C | 92.06 | |
| d1pkla2 | 258 | Pyruvate kinase, N-terminal domain {Leishmania mex | 92.03 | |
| d1oy0a_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Mycoba | 91.99 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 91.96 | |
| d1eixa_ | 231 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 91.68 | |
| d1muma_ | 289 | 2-methylisocitrate lyase {Escherichia coli [TaxId: | 91.53 | |
| d1qpoa1 | 169 | Quinolinic acid phosphoribosyltransferase (Nicotin | 91.47 | |
| d1gvfa_ | 284 | Tagatose-1,6-bisphosphate aldolase {Escherichia co | 91.47 | |
| d1wdda1 | 325 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {R | 91.08 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 90.91 | |
| d1qapa1 | 167 | Quinolinic acid phosphoribosyltransferase (Nicotin | 90.89 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 90.89 | |
| d1ykwa1 | 283 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {C | 90.81 | |
| d1geha1 | 307 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {A | 90.67 | |
| d1o4ua1 | 170 | Quinolinic acid phosphoribosyltransferase (Nicotin | 90.63 | |
| d1o66a_ | 260 | Ketopantoate hydroxymethyltransferase PanB {Neisse | 90.62 | |
| d1e0ta2 | 246 | Pyruvate kinase, N-terminal domain {Escherichia co | 90.51 | |
| d1dbta_ | 237 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 90.19 | |
| d1m3ua_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Escher | 89.99 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 89.77 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 89.24 | |
| d1hl2a_ | 295 | N-acetylneuraminate lyase {Escherichia coli [TaxId | 89.16 | |
| d1f6ya_ | 262 | Methyltetrahydrofolate: corrinoid/iron-sulfur prot | 89.13 | |
| d1jpdx1 | 208 | L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: | 89.01 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 88.9 | |
| d1wdda1 | 325 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {R | 88.7 | |
| d1oy0a_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Mycoba | 88.67 | |
| d1jdfa1 | 309 | D-glucarate dehydratase {Escherichia coli [TaxId: | 88.58 | |
| d1vr6a1 | 338 | 3-deoxy-D-arabino-heptulosonate-7-phosphate syntha | 88.19 | |
| d1nsja_ | 205 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {T | 88.01 | |
| d1krwa_ | 123 | NTRC receiver domain {Salmonella typhimurium [TaxI | 87.74 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 87.66 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 87.09 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 86.81 | |
| d1ny5a1 | 137 | Transcriptional activator sigm54 (NtrC1), N-termin | 86.38 | |
| d1m3ua_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Escher | 86.23 | |
| d2pl1a1 | 119 | PhoP receiver domain {Escherichia coli [TaxId: 562 | 85.96 | |
| d2d69a1 | 291 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {A | 85.82 | |
| d1bwva1 | 328 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {G | 85.36 | |
| d1piia2 | 254 | Indole-3-glycerophosphate synthase, IPGS {Escheric | 85.34 | |
| d1kkoa1 | 251 | beta-Methylaspartase {Citrobacter amalonaticus [Ta | 84.83 | |
| d2d69a1 | 291 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {A | 84.63 | |
| d1i4na_ | 251 | Indole-3-glycerophosphate synthase, IPGS {Thermoto | 84.47 | |
| d3bofa1 | 260 | Cobalamin-dependent methionine synthase MetH, C-te | 84.44 | |
| d1n55a_ | 249 | Triosephosphate isomerase {Leishmania mexicana [Ta | 84.11 | |
| d1qkka_ | 140 | Transcriptional regulatory protein DctD, receiver | 83.55 | |
| d2g50a2 | 282 | Pyruvate kinase, N-terminal domain {Rabbit (Orycto | 83.24 | |
| d1l6wa_ | 220 | Decameric fructose-6-phosphate aldolase/transaldol | 82.9 | |
| d1ad1a_ | 264 | Dihydropteroate synthetase {Staphylococcus aureus | 82.41 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 82.13 | |
| d1m5wa_ | 242 | Pyridoxine 5'-phosphate synthase {Escherichia coli | 81.91 | |
| d1dbwa_ | 123 | Transcriptional regulatory protein FixJ, receiver | 81.71 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 81.23 | |
| d1a04a2 | 138 | Nitrate/nitrite response regulator (NarL), receive | 81.19 | |
| d1f74a_ | 293 | N-acetylneuraminate lyase {Haemophilus influenzae | 81.11 | |
| d1a3xa2 | 265 | Pyruvate kinase, N-terminal domain {Baker's yeast | 81.06 | |
| d1piia1 | 198 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {E | 80.63 | |
| d1qwga_ | 251 | (2r)-phospho-3-sulfolactate synthase ComA {Archaeo | 80.5 | |
| d1r2ra_ | 246 | Triosephosphate isomerase {Rabbit (Oryctolagus cun | 80.43 | |
| d1mo0a_ | 257 | Triosephosphate isomerase {Nematode (Caenorhabditi | 80.36 | |
| d1r30a_ | 312 | Biotin synthase {Escherichia coli [TaxId: 562]} | 80.03 |
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.8e-65 Score=488.65 Aligned_cols=302 Identities=23% Similarity=0.374 Sum_probs=258.0
Q ss_pred cEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHHHHHHHHHC
Q 017176 10 WFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAY 89 (376)
Q Consensus 10 ri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~ 89 (376)
+++||||+++||.+||.+|+.+| ++++||||++++++++..++...+. .++.++|+++||+|++|+.+++||+++++
T Consensus 2 ki~LAPM~g~td~~fR~l~~~~g-~~~~~Temi~~~~~~~~~~~~~~~~-~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~- 78 (305)
T d1vhna_ 2 KVGLAPMAGYTDSAFRTLAFEWG-ADFAFSEMVSAKGFLMNSQKTEELL-PQPHERNVAVQIFGSEPNELSEAARILSE- 78 (305)
T ss_dssp EEEECCCTTTCSHHHHHHHHTTT-CCCEECSCEEHHHHHTTCHHHHHHS-CCTTCTTEEEEEECSCHHHHHHHHHHHTT-
T ss_pred eEEEECcCCCccHHHHHHHHHHC-cCEEEECCEEechhhhCChhhHhhc-cCCCCCCeEEEEeccchhhhhhhhhhhhh-
Confidence 68999999999999999999997 7999999999999888776555544 57788999999999999999999988765
Q ss_pred CCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccE
Q 017176 90 NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRH 169 (376)
Q Consensus 90 G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~ 169 (376)
|+|+||||||||++++++++ +|++||++|+++.++|+++++.+++|||||+|+||++.. ..+.+ +.++++|+++
T Consensus 79 ~~~~IdlN~GCP~~~v~~~g-~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvK~RlG~d~~~-~~~~~----~~l~~~G~~~ 152 (305)
T d1vhna_ 79 KYKWIDLNAGCPVRKVVKEG-AGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNE-VEEIY----RILVEEGVDE 152 (305)
T ss_dssp TCSEEEEEECCCCHHHHHTT-CGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEESCSSSCC-HHHHH----HHHHHTTCCE
T ss_pred heeeeeEEEEecchhhcccc-cceeeccCHHHHHHHhhhhhhhcccccccccccCcccch-hhHHH----HHHHHhCCcE
Confidence 99999999999999988766 599999999999999999999999999999999998743 33433 4456899999
Q ss_pred EEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHhhCCchhhH
Q 017176 170 FIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLG 248 (376)
Q Consensus 170 I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~lf~~ 248 (376)
|+|||||+.+.+.++++ |+.+++++ .++|||+||||.|.+|+.++++ +||||||||||++.|||+| .
T Consensus 153 itvH~Rt~~q~~~~~a~--------~~~i~~~~---~~ipvi~NGdI~s~~d~~~~l~~tg~dgVMiGRgal~nP~if-~ 220 (305)
T d1vhna_ 153 VFIHTRTVVQSFTGRAE--------WKALSVLE---KRIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIF-K 220 (305)
T ss_dssp EEEESSCTTTTTSSCCC--------GGGGGGSC---CSSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTTCTTHH-H
T ss_pred EEechhhhhhccccchh--------hhHHHhhh---hhhhhhcccccccHHHHHHHHHhcCCCeEehhHHHHHhhhHh-h
Confidence 99999998766655555 44443332 2799999999999999999998 8999999999999999997 5
Q ss_pred hhhhhhhCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCCCChHHHHHHHHHHhhhhhHHHHHH
Q 017176 249 HVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLE 328 (376)
Q Consensus 249 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 328 (376)
+++..+.+.+....++.++++.+.+|.+.+.++||+ +.++..+|||+.||+++++++++||+++++ +++.+++.++++
T Consensus 221 ~i~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~g~-~~~l~~~rkhl~~~~kg~p~ak~~R~~l~~-~~~~~el~~~l~ 298 (305)
T d1vhna_ 221 QIKDFLRSGKYSEPSREEILRTFERHLELLIKTKGE-RKAVVEMRKFLAGYTKDLKGARRFREKVMK-IEEVQILKEMFY 298 (305)
T ss_dssp HHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHTTHHHHTTTCTTHHHHHHHHTT-CCCHHHHHHHHH
T ss_pred hhhhhhcCCCcccchhHHHHHhHHHHHHHHHHhcCc-chHHHHHHHHHHHHHcCCCcHHHHHHHHHh-CCCHHHHHHHHH
Confidence 666555544444567788888888899888899987 788999999999999999999999999854 477778888888
Q ss_pred HHHHhC
Q 017176 329 ETIVAI 334 (376)
Q Consensus 329 ~~~~~~ 334 (376)
++++++
T Consensus 299 ~~~~e~ 304 (305)
T d1vhna_ 299 NFIKEV 304 (305)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 888775
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=8.4e-35 Score=279.92 Aligned_cols=238 Identities=15% Similarity=0.159 Sum_probs=185.4
Q ss_pred CCCeecCCcEEEccCCC---------CChHHHHHHH-HHhCCCcEEEecceeecccccc---------cchhhh---hh-
Q 017176 2 VARQYLPPWFSVAPMMD---------WTDNHYRTLA-RLISKHAWLYTEMLAAETIIYQ---------QGNLDR---FL- 58 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~---------~td~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~---------~~~~~~---~~- 58 (376)
||+++|||||++|||.. +|+..+++|. |+.||+|+++||.+.++..... +..... +.
T Consensus 10 ig~~~lkNRiv~aPm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIite~~~V~~~~~~~~~~~~~~~d~~i~~~k~l~~ 89 (337)
T d1z41a1 10 IKDMTLKNRIVMSPMCMYSSHEKDGKLTPFHMAHYISRAIGQVGLIIVEASAVNPQGRITDQDLGIWSDEHIEGFAKLTE 89 (337)
T ss_dssp ETTEEESSSEEECCCCCCCCTTSSSCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSCBCSSTHHHHHHHHHHH
T ss_pred ECCEEECCCEEeCccCCCccCCCCCCCCHHHHHHHHHHHcCCceEEEECcEEEccccccccCccccccHHHHHHHHHHHH
Confidence 68999999999999952 4778888886 6779999999998887643222 111111 22
Q ss_pred ccCCCCCCEEEEecCCC-----------------------------------HHHHHHHHHHHHHCCCCEEEecCC----
Q 017176 59 AFSPEQHPIVLQIGGSN-----------------------------------LDNLAKATELANAYNYDEINLNCG---- 99 (376)
Q Consensus 59 ~~~~~~~p~~vQL~g~~-----------------------------------~~~~~~aa~~~~~~G~d~IeiN~g---- 99 (376)
.+|..+.++++||++.. .++|++||++++++|||+||||++
T Consensus 90 avh~~G~~i~~QL~h~Gr~~~~~~~~~~ps~~~~~~~~~~p~~lt~~eI~~ii~~f~~AA~ra~~AGfDGVEiH~ahGyL 169 (337)
T d1z41a1 90 QVKEQGSKIGIQLAHAGRKAELEGDIFAPSAIAFDEQSATPVEMSAEKVKETVQEFKQAAARAKEAGFDVIEIHAAHGYL 169 (337)
T ss_dssp HHHHTTCEEEEEEECCGGGCCCSSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECTTSH
T ss_pred HhhccccccchhhhcCCCcccccCCCCCCcccccccCCCCCcccCHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccCcce
Confidence 36889999999998631 389999999999999999999987
Q ss_pred -----CCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCC--CccHHHHHHHHHHHhhcCCccEEEE
Q 017176 100 -----CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD--HDSYNQLCDFIYKVSSLSPTRHFII 172 (376)
Q Consensus 100 -----cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~--~~~~~~~~~~i~~~~e~~Gvd~I~v 172 (376)
+|.. +.|+|+||++++||.+++.||+++|++.++.|+.|+++..-.. ..+.++.+.+ ++.++++|+|.+++
T Consensus 170 l~qFlSp~~-N~RtDeYGGs~enR~Rf~~Eiv~air~~~~~~~~vr~~~~~~~~~g~~~~~~~~~-~~~l~~~g~d~~~~ 247 (337)
T d1z41a1 170 IHEFLSPLS-NHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGF-AKWMKEQGVDLIDC 247 (337)
T ss_dssp HHHHHCTTT-CCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHHH-HHHHHHTTCCEEEE
T ss_pred eeeecCCcc-ccccccccchhhhhhhHHHHHHHHHhhhhcccceEEecccccccCccchhhhHHH-HHHHHHcCCccccc
Confidence 7875 5899999999999999999999999999999999998864221 2356676664 56678899999999
Q ss_pred ccCccccCCCCCCCCCCCCcc-cHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcC-cCeeEEchHHhhCCchhhH
Q 017176 173 HSRKALLNGISPAENRTIPPL-KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAAYQNPWYTLG 248 (376)
Q Consensus 173 h~r~~~~~g~~~~~~~~~~~~-~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~G-ad~VmiGRa~l~~P~lf~~ 248 (376)
+.+...... ....+. .......+++ .+++||+++|+|.|+++++++|+.| ||+|++||++++||+|+.+
T Consensus 248 s~g~~~~~~------~~~~~~~~~~~~~~ik~-~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~iadPd~~~k 318 (337)
T d1z41a1 248 SSGALVHAD------INVFPGYQVSFAEKIRE-QADMATGAVGMITDGSMAEEILQNGRADLIFIGRELLRDPFFART 318 (337)
T ss_dssp ECCCSSCCC------CCCCTTTTHHHHHHHHH-HHCCEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHHCTTHHHH
T ss_pred ccccccccc------cccCCcccHHHHHHHHH-hcCceEEEeCCcCCHHHHHHHHHCCCcceehhhHHHHhCchHHHH
Confidence 877532111 111222 2344445544 4589999999999999999999955 9999999999999998643
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.6e-35 Score=279.90 Aligned_cols=242 Identities=14% Similarity=0.133 Sum_probs=182.8
Q ss_pred CCCeecCCcEEEccCCC-------CChHHHHHHH-HHhCCCcEEEecceeecccccc---------cchhhh---hh-cc
Q 017176 2 VARQYLPPWFSVAPMMD-------WTDNHYRTLA-RLISKHAWLYTEMLAAETIIYQ---------QGNLDR---FL-AF 60 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~-------~td~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~---------~~~~~~---~~-~~ 60 (376)
||+++|||||++|||.. .|+..+.+|. |+.||+|+++||.+.++..... +..... +. .+
T Consensus 11 ig~~~lkNRiv~apm~~~~~~~~~~~~~~~~yy~~rA~gG~glIi~e~~~v~~~~~~~~~~~~~~~d~~i~~~k~l~~~v 90 (330)
T d1ps9a1 11 LGFTTLKNRVLMGSMHTGLEEYPDGAERLAAFYAERARHGVALIVSGGIAPDLTGVGMEGGAMLNDASQIPHHRTITEAV 90 (330)
T ss_dssp CSSCEESSSEEECCCCCSCTTSTTHHHHHHHHHHHHHHTTCSEEEEEEEBSSSTTCSBTTCCBCCSGGGHHHHHHHHHHH
T ss_pred CCCEEeCCCcEeCCCCCCcCCCCCCcHHHHHHHHHHHhCCeEEEEEeeeEEcCCccccCCCcccCCcccccccccceeee
Confidence 78999999999999953 3566677775 7789999999999987632211 112222 22 36
Q ss_pred CCCCCCEEEEecCCC----------------------------------HHHHHHHHHHHHHCCCCEEEecCC-------
Q 017176 61 SPEQHPIVLQIGGSN----------------------------------LDNLAKATELANAYNYDEINLNCG------- 99 (376)
Q Consensus 61 ~~~~~p~~vQL~g~~----------------------------------~~~~~~aa~~~~~~G~d~IeiN~g------- 99 (376)
|..+.++++||++.. .++|++||++++++|||+||||++
T Consensus 91 h~~g~~i~~QL~H~Gr~~~~~~~~~ps~~~~~~~~~~p~~lt~~eI~~ii~~f~~aA~ra~~AGfDgVEIh~ahGyLl~q 170 (330)
T d1ps9a1 91 HQEGGKIALQILHTGRYSYQPHLVAPSALQAPINRFVPHELSHEEILQLIDNFARCAQLAREAGYDGVEVMGSEGYLINE 170 (330)
T ss_dssp HHTTCCEEEEECCCGGGSBSTTCEESSSCCCTTCSSCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECBTSHHHH
T ss_pred ecCCCeehhhhhhcCCccccCcccCCccccccccCCCChhcChhHHHHHHHHHHHHHHHHHHhCcCeeeeccchHHHHHH
Confidence 889999999998531 379999999999999999999998
Q ss_pred --CCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCC----CccHHHHHHHHHHHhhcCCccEEEEc
Q 017176 100 --CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD----HDSYNQLCDFIYKVSSLSPTRHFIIH 173 (376)
Q Consensus 100 --cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~----~~~~~~~~~~i~~~~e~~Gvd~I~vh 173 (376)
+|.. +.|+|+||++++||.+++.|||++||+.++.++.|.+|+++++ ..++++.+++ ++.+++.|+|.+.++
T Consensus 171 FlSp~~-N~RtDeYGGs~enR~Rf~~Eii~air~~vg~d~~v~~R~s~~d~~~~g~~~~~~~~~-~~~l~~~g~d~~~~~ 248 (330)
T d1ps9a1 171 FLTLRT-NQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVEL-AQAIEAAGATIINTG 248 (330)
T ss_dssp HHCTTT-CCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHHH-HHHHHHHTCSEEEEE
T ss_pred HHHhhc-ccccccCCccHhhhhHHHHHHHHHHHHHcCCCceeEecccccccccCCCCHHHHHHH-HHHHHHhhhhhhhcc
Confidence 6875 5899999999999999999999999999865555555555443 2357777764 556788999999998
Q ss_pred cCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcC-cCeeEEchHHhhCCchhh
Q 017176 174 SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAAYQNPWYTL 247 (376)
Q Consensus 174 ~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~G-ad~VmiGRa~l~~P~lf~ 247 (376)
.+...... +......+...+..+.+.+++.+++|||++|+|+|+++++++++.| ||+|++||++++||+|+.
T Consensus 249 ~g~~~~~~--~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~iadP~~~~ 321 (330)
T d1ps9a1 249 IGWHEARI--PTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDILSRGDADMVSMARPFLADAELLS 321 (330)
T ss_dssp ECBTTCSS--CSSSTTSCTTTTHHHHHHHTTSCSSCEEECSSCCSHHHHHHHHHTTSCSEEEESTHHHHCTTHHH
T ss_pred cccccccc--cccCCCCcchhHHHHHHHHHhhCCceEEEeCCCCCHHHHHHHHHCCCcchhHhhHHHHhChhHHH
Confidence 66432111 1111122223344455555556699999999999999999999955 999999999999999964
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=100.00 E-value=3.1e-33 Score=269.39 Aligned_cols=241 Identities=11% Similarity=0.057 Sum_probs=171.8
Q ss_pred CCCeecCCcEEEccCCCC-----ChHHHHHH-HHHhCCCcEEEecceeecccccc----------cchhh---hhh-ccC
Q 017176 2 VARQYLPPWFSVAPMMDW-----TDNHYRTL-ARLISKHAWLYTEMLAAETIIYQ----------QGNLD---RFL-AFS 61 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~-----td~~~r~~-~~~~Gg~gl~~te~v~~~~~~~~----------~~~~~---~~~-~~~ 61 (376)
||+++|||||++|||+.. ++....++ .++.||+|+++||++.+...... ...+. ++. .+|
T Consensus 15 ig~~~l~NRiv~apm~~~~~~~~~~~~~~~~~~rA~gG~gliite~~~v~~~~~~~~~~~~~~~~d~~i~~~~~l~~~vh 94 (340)
T d1djqa1 15 IGPKTLRNRFYQVPHAIGAGSDKPGFQSAHRSVKAEGGWAALNTEYCSINPESDDTHRLSARIWDEGDVRNLKAMTDEVH 94 (340)
T ss_dssp ETTEEESSSEEECCCCCSCTTTCHHHHHHHHHHHHHTTCSEEEEEEEESSTTSCCTTSCCEECSSHHHHHHHHHHHHHHH
T ss_pred ECCEEECCCeEeCCCCCCCCCCCCHHHHHHHHHHhccCeEEEEEEEEEeccccccCCCCCccccceeecchhhhhHHHhh
Confidence 689999999999999742 12334444 46789999999999998743211 11122 222 368
Q ss_pred CCCCCEEEEecCCC---------------------------------------HHHHHHHHHHHHHCCCCEEEecCC---
Q 017176 62 PEQHPIVLQIGGSN---------------------------------------LDNLAKATELANAYNYDEINLNCG--- 99 (376)
Q Consensus 62 ~~~~p~~vQL~g~~---------------------------------------~~~~~~aa~~~~~~G~d~IeiN~g--- 99 (376)
..+.++++||++.. .++|++||++++++|||+||||++
T Consensus 95 ~~g~~i~~Ql~H~Gr~~~~~~~~~~~~~~s~~~~~~~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVEih~ahGy 174 (340)
T d1djqa1 95 KYGALAGVELWYGGAHAPNMESRATPRGPSQYASEFETLSYCKEMDLSDIAQVQQFYVDAAKRSRDAGFDIVYVYGAHSY 174 (340)
T ss_dssp HTTCEEEEEEECCGGGSCCTTTCCCCEESSCCBCSSSTTCBCEECCHHHHHHHHHHHHHHHHHHHHHTCSEEEEEECTTC
T ss_pred cccceeeEeeeeccccccccccCCcccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHhccceeeeeccccc
Confidence 88999999996421 368999999999999999999998
Q ss_pred ------CCCccccCCCCccccccCCHHHHHHHHHHHhcccC--ccEEEEecCCC------CCCccHHHHHHHHHHHhhcC
Q 017176 100 ------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGV------DDHDSYNQLCDFIYKVSSLS 165 (376)
Q Consensus 100 ------cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~--~pv~vKiR~g~------~~~~~~~~~~~~i~~~~e~~ 165 (376)
||.. +.|+|+||++++||.+++.||+++||+.++ +||.+|+.... .+.+. .+.. ...+++.
T Consensus 175 Ll~qFls~~~-N~R~D~yGGs~enR~Rf~~EIi~aIr~~vg~~~~i~~R~s~~~~~~~~~~~~e~--~~~~--~~~l~~~ 249 (340)
T d1djqa1 175 LPLQFLNPYY-NKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEAEV--DGQK--FVEMADS 249 (340)
T ss_dssp HHHHHHCTTT-CCCCSTTSSSHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSSCTTSCCTTT--HHHH--HHHHHTT
T ss_pred hhhhhhhhcc-ccccccccccHHhhhHHHHHHHHHHHHHHhhhhhceeeccccccccCCCCchhh--hHHH--HHHHHhh
Confidence 7885 589999999999999999999999999984 56777665421 11111 1111 2234579
Q ss_pred CccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcC-cCeeEEchHHhhCCc
Q 017176 166 PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAAYQNPW 244 (376)
Q Consensus 166 Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~G-ad~VmiGRa~l~~P~ 244 (376)
|+|.+.|+.+.....+..........+..+....+.+++..++|||++|+|+|+++++++++.| ||+|++||++++||+
T Consensus 250 ~vd~~~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~G~i~~~~~a~~~l~~G~aDlV~~gR~~iadPd 329 (340)
T d1djqa1 250 LVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIADPF 329 (340)
T ss_dssp TCSEEEEEESCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTCSSCEEECSCCCCHHHHHHHHHTTSCSBEEESHHHHHCTT
T ss_pred ccceeeeeecccccccccccccccCCccccHHHHHHHHHHcCCeEEEECCCCCHHHHHHHHHCCCccchhhHHHHHHCcc
Confidence 9999999876421111100011111122222233445555699999999999999999999965 999999999999999
Q ss_pred hhh
Q 017176 245 YTL 247 (376)
Q Consensus 245 lf~ 247 (376)
|+.
T Consensus 330 l~~ 332 (340)
T d1djqa1 330 LPQ 332 (340)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=99.97 E-value=2.2e-29 Score=244.15 Aligned_cols=231 Identities=13% Similarity=0.134 Sum_probs=168.8
Q ss_pred CCCeecCCcEEEccCCC--------C-ChHHHHHHHHHhCCCcEEEecceeecccccccc---------hhh---hhh-c
Q 017176 2 VARQYLPPWFSVAPMMD--------W-TDNHYRTLARLISKHAWLYTEMLAAETIIYQQG---------NLD---RFL-A 59 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~--------~-td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~---------~~~---~~~-~ 59 (376)
||++++||||++|||.. + ++....++ ++.+|.|+++||.+.++....... ... ++. .
T Consensus 10 ig~~~lkNRiv~apm~~~~a~~~g~~~~~~~~~yy-~~ra~~Glii~e~~~V~~~~~~~~~~~~l~~d~~i~~~k~l~~~ 88 (363)
T d1vyra_ 10 VGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYY-RQRASAGLIISEATQISAQAKGYAGAPGLHSPEQIAAWKKITAG 88 (363)
T ss_dssp ETTEEESSSEEECCCCCCCCBTTTTBCCHHHHHHH-HHTTTSSEEEEEEEESSSTTCCSTTCCBSSSHHHHHHHHHHHHH
T ss_pred CCCEEECCCeEEccccCCcCCCCCCCCHHHHHHHH-HHHcCcCEEEEeeeEECccccCCCCCCccCChhhcccchhhhhh
Confidence 68999999999999964 2 33344455 445567999999988874322211 111 122 2
Q ss_pred cCCCCCCEEEEecCCC------------------------------------------------------HHHHHHHHHH
Q 017176 60 FSPEQHPIVLQIGGSN------------------------------------------------------LDNLAKATEL 85 (376)
Q Consensus 60 ~~~~~~p~~vQL~g~~------------------------------------------------------~~~~~~aa~~ 85 (376)
+|..+.++++||++.. .++|++||++
T Consensus 89 vh~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~r 168 (363)
T d1vyra_ 89 VHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQAVAN 168 (363)
T ss_dssp HHHTTCCEEEEEECCTTSSCGGGSGGGCCCEESSSCCCCSEEEEECTTSCEEEEECCCCEECCGGGHHHHHHHHHHHHHH
T ss_pred hhhcCCeeeeeeeccCccccccccCCCcceeecccccccccccccCcccccccCCCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 6888999999996421 2589999999
Q ss_pred HHHCCCCEEEecCC---------CCCccccCCCCccccccCCHHHHHHHHHHHhcccC-ccEEEEecCCC--CC----Cc
Q 017176 86 ANAYNYDEINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGV--DD----HD 149 (376)
Q Consensus 86 ~~~~G~d~IeiN~g---------cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~-~pv~vKiR~g~--~~----~~ 149 (376)
++++|||+||||++ +|.. |.|+|+||++++||.+++.||+++||+.++ .+|.++++... ++ ..
T Consensus 169 A~~aGfDgVEIH~ahGYLl~qFlSp~~-N~RtDeYGGs~eNR~Rf~~Eii~aIr~~~g~d~i~~r~s~~~~~~~~~~gg~ 247 (363)
T d1vyra_ 169 AREAGFDLVELHSAHGYLLHQFLSPSS-NQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNVDNGPN 247 (363)
T ss_dssp HHHTTCSEEEEEECTTSHHHHHHCTTT-CCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTTBCCCTT
T ss_pred HHHhccceeeecccCceeeeeeecCcc-cccccccccchhhhhHhHHHHHhhhhhhcCCCCcceeecccccccchhhccc
Confidence 99999999999988 5774 589999999999999999999999999984 35777776521 11 13
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcC
Q 017176 150 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG 229 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~G 229 (376)
+.++.+.+ .+.+++.|+|+|+++..... .+ ++....+...+++. .++||+++|. .|++.++++++.|
T Consensus 248 ~~~e~~~~-~~~l~~~gvd~i~vs~~~~~-~~---------~~~~~~~~~~~~~~-~~~~vi~~G~-~t~~~ae~~l~~G 314 (363)
T d1vyra_ 248 EEADALYL-IEELAKRGIAYLHMSETDLA-GG---------KPYSEAFRQKVRER-FHGVIIGAGA-YTAEKAEDLIGKG 314 (363)
T ss_dssp HHHHHHHH-HHHHHHTTCSEEEEECCBTT-BC---------CCCCHHHHHHHHHH-CCSEEEEESS-CCHHHHHHHHHTT
T ss_pred chHHHHHH-HHHHHhcCCeeeecccCCcc-CC---------ccccHHHHHHHHHh-cCceEEecCC-CCHHHHHHHHHCC
Confidence 46666654 45667899999999865421 11 11112233344444 4889988775 5999999999965
Q ss_pred -cCeeEEchHHhhCCchhh
Q 017176 230 -AHHVMVGRAAYQNPWYTL 247 (376)
Q Consensus 230 -ad~VmiGRa~l~~P~lf~ 247 (376)
||+|.+||++++||+|+.
T Consensus 315 ~~DlV~~gR~liadP~~~~ 333 (363)
T d1vyra_ 315 LIDAVAFGRDYIANPDLVA 333 (363)
T ss_dssp SCSEEEESHHHHHCTTHHH
T ss_pred CcceehhhHHHHHCccHHH
Confidence 999999999999999864
|
| >d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Morphinone reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.96 E-value=4.6e-29 Score=242.80 Aligned_cols=233 Identities=13% Similarity=0.096 Sum_probs=169.1
Q ss_pred CCCeecCCcEEEccCCC-------CChHHHHHHHHHhCCCcEEEecceeecccccccc---------hhh---hhh-ccC
Q 017176 2 VARQYLPPWFSVAPMMD-------WTDNHYRTLARLISKHAWLYTEMLAAETIIYQQG---------NLD---RFL-AFS 61 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~-------~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~---------~~~---~~~-~~~ 61 (376)
||+++|||||++|||.. .|+..++++.+..+ .|+++||.+.++....... ... ++. .+|
T Consensus 14 Ig~~~lkNRiv~apm~~~~~~dg~~t~~~~~yy~~rA~-gGlii~e~~~V~~~~~~~~~~~~i~~d~~i~~~k~l~~~vh 92 (374)
T d1gwja_ 14 LGSLSLPNRVIMAPLTRSRTPDSVPGRLQQIYYGQRAS-AGLIISEATNISPTARGYVYTPGIWTDAQEAGWKGVVEAVH 92 (374)
T ss_dssp ETTEEESCSEEECCCCCCCCSSSCCCHHHHHHHHHTTT-SSEEEEEEEESSGGGCCBTTCCBCSSHHHHHHHHHHHHHHH
T ss_pred ECCEEECCCeEEcccCCCCCCCCCCCHHHHHHHHHHhC-CCEEEEEeEEECCccCCCCCCCccchhhhhhhhhhHHHHHh
Confidence 68999999999999963 57778888765554 5899999988864332211 111 222 368
Q ss_pred CCCCCEEEEecCCC-------------------------------------------------------HHHHHHHHHHH
Q 017176 62 PEQHPIVLQIGGSN-------------------------------------------------------LDNLAKATELA 86 (376)
Q Consensus 62 ~~~~p~~vQL~g~~-------------------------------------------------------~~~~~~aa~~~ 86 (376)
..+.++++||++.. .++|++||+++
T Consensus 93 ~~G~~i~~QL~H~Gr~~~~~~~~~g~~~~~ps~~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~rA 172 (374)
T d1gwja_ 93 AKGGRIALQLWHVGRVSHELVQPDGQQPVAPSALKAEGAECFVEFEDGTAGLHPTSTPRALETDGIPGIVEDYRQAAQRA 172 (374)
T ss_dssp HTTCCEEEEEECCTTSCCTTTSGGGCCCEESSSCCCTTCEEEEECTTSCEEEEECCCCEECCGGGHHHHHHHHHHHHHHH
T ss_pred ccCcceEeeeeccCcccccccCCCCCceeccccccccCccccccccccccccCCCCCccccCHHHHHHHHHHHHHHHHHH
Confidence 88999999997421 36899999999
Q ss_pred HHCCCCEEEecCC---------CCCccccCCCCccccccCCHHHHHHHHHHHhcccC-ccEEEEecCCCCCC----ccHH
Q 017176 87 NAYNYDEINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDH----DSYN 152 (376)
Q Consensus 87 ~~~G~d~IeiN~g---------cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~-~pv~vKiR~g~~~~----~~~~ 152 (376)
+++|||+||||++ +|.. +.|+|+||++++||.+++.||+++||+.++ ..+.+++....+.. .+..
T Consensus 173 ~~AGfDgVEIH~ahGYLl~qFLSp~~-N~RtDeYGGSlENR~Rf~~EIi~aIR~~vg~~~v~~r~~~~~~~~g~~~~~~~ 251 (374)
T d1gwja_ 173 KRAGFDMVEVHAANACLPNQFLATGT-NRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELFGLTDDEPE 251 (374)
T ss_dssp HHTTCSEEEEEECTTCHHHHHHSTTT-CCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCCCTTCCCSCHH
T ss_pred HHhCCCEEEeccchhhhHHHHHHhhc-CccccccccchhhhhhhHHHHHHHHHHHcCCcceeeeeeeeccccCCcccchH
Confidence 9999999999987 5764 589999999999999999999999999984 44555554321110 1122
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcC
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAH 231 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad 231 (376)
.....++..++..|+++++++........ ...+. .+...+++. .++|||++|+| +++.++++++ ..||
T Consensus 252 ~~~~~~~~~ld~~~i~~~~~~~~~~~~~~------~~~~~---~~~~~i~~~-~~~pvi~~G~i-~~~~ae~~l~~g~aD 320 (374)
T d1gwja_ 252 AMAFYLAGELDRRGLAYLHFNEPDWIGGD------ITYPE---GFREQMRQR-FKGGLIYCGNY-DAGRAQARLDDNTAD 320 (374)
T ss_dssp HHHHHHHHHHHHHTCSEEEEECSCBTTBC------CCCCT---THHHHHHHH-CCSEEEEESSC-CHHHHHHHHHTTSCS
T ss_pred HHHHHhhccccccCceEEEeccCcccCCC------cchhH---HHHHHHHHH-cCCCEEEECCc-CHHHHHHHHHcCCCc
Confidence 22333455567889999999865421110 01111 122344444 59999999999 8999999999 5599
Q ss_pred eeEEchHHhhCCchhh
Q 017176 232 HVMVGRAAYQNPWYTL 247 (376)
Q Consensus 232 ~VmiGRa~l~~P~lf~ 247 (376)
+|++||++|+||+|..
T Consensus 321 lV~~gR~~iadPd~~~ 336 (374)
T d1gwja_ 321 AVAFGRPFIANPDLPE 336 (374)
T ss_dssp EEEESHHHHHCTTHHH
T ss_pred EehhhHHHHHCccHHH
Confidence 9999999999999964
|
| >d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Old yellow enzyme (OYE) species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]
Probab=99.96 E-value=3.3e-29 Score=245.70 Aligned_cols=239 Identities=11% Similarity=0.022 Sum_probs=160.9
Q ss_pred CCCeecCCcEEEccCCC--------CC--hHHHHHHH-HHhCCCcEEEecceeecccccccc---------hhhh---hh
Q 017176 2 VARQYLPPWFSVAPMMD--------WT--DNHYRTLA-RLISKHAWLYTEMLAAETIIYQQG---------NLDR---FL 58 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~--------~t--d~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~~~---------~~~~---~~ 58 (376)
||+++|||||++|||.. ++ |...+++. |+.||+|+++||.+.++....... .+.. +.
T Consensus 22 Ig~~~lkNRiv~apm~~~~a~~~G~~~~~d~~i~yy~~rA~GG~GlIi~e~~~V~~~g~~~~~~~~l~~d~~i~~~k~l~ 101 (399)
T d1oyaa_ 22 IGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFISPQAGGYDNAPGVWSEEQMVEWTKIF 101 (399)
T ss_dssp ETTEEESSSEEBCCCCCCCCBTTTTBCCTTTHHHHHHHHTCSTTCEEEEEEEESSGGGCCCTTSCBSSSHHHHHHHHHHH
T ss_pred ECCEEecCccEECCccCCcCCCCCCCCCHHHHHHHHHHHHcCCeEEEEeccEEECcccCCCCCCCccCCHHHHHHHhHHH
Confidence 68999999999999975 23 44677775 677999999999988764322211 1111 11
Q ss_pred -ccCCCCCCEEEEecCCC--------------------------------------------------HHHHHHHHHHHH
Q 017176 59 -AFSPEQHPIVLQIGGSN--------------------------------------------------LDNLAKATELAN 87 (376)
Q Consensus 59 -~~~~~~~p~~vQL~g~~--------------------------------------------------~~~~~~aa~~~~ 87 (376)
.+|..+.++++||++.. .++|++||++++
T Consensus 102 ~~vh~~Ga~i~~QL~H~Gr~~~~~~~~~~g~~~~~~s~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~rA~ 181 (399)
T d1oyaa_ 102 NAIHEKKSFVWVQLWVLGWAAFPDNLARDGLRYDSASDNVFMDAEQEAKAKKANNPQHSLTKDEIKQYIKEYVQAAKNSI 181 (399)
T ss_dssp HHHHHTTCEEEEEEECCGGGSCHHHHHHTTCCEEESCSSCCSCHHHHHHHHHTTCCEEECCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccccchhhhhhccccCccccccccccccCccccccCCCCCCcccccCCCCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 26888999999998520 268999999999
Q ss_pred HCCCCEEEecCC---------CCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCC-C-------CCCc
Q 017176 88 AYNYDEINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIG-V-------DDHD 149 (376)
Q Consensus 88 ~~G~d~IeiN~g---------cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g-~-------~~~~ 149 (376)
++|||+||||++ +|.. |.|+|+||++++||.+++.||+++||+++ +.||.||+... + ++..
T Consensus 182 ~AGfDgVEIH~aHGYLl~qFLSp~t-N~RtDeYGGSlENR~Rf~~Eii~aIR~~vg~~~IgvRls~~d~~~~~~~~~~~~ 260 (399)
T d1oyaa_ 182 AAGADGVEIHSANGYLLNQFLDPHS-NTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMSGGAETG 260 (399)
T ss_dssp HTTCSEEEEECCTTSHHHHHHCTTT-CCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCGGGSTT
T ss_pred HhCCceEehhhhHHHHHHHhhcccc-cccccccCcchhhhhHHHHHHHHhhhheeeccCceEEechhhcccccCCccccc
Confidence 999999999997 5775 58999999999999999999999999988 35888887642 1 1111
Q ss_pred cHHHHHHHHHHHhhc---CC--ccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHH
Q 017176 150 SYNQLCDFIYKVSSL---SP--TRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNA 224 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~---~G--vd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~ 224 (376)
.+.+.... +..++. .| .+.+.+.................... ..+.+++.+++|||++|+|.+.+++.+
T Consensus 261 ~~~~~~~~-a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ik~~~~~PVi~~G~i~~~~~~~~ 334 (399)
T d1oyaa_ 261 IVAQYAYV-AGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGG-----SNDFVYSIWKGPVIRAGNFALHPEVVR 334 (399)
T ss_dssp HHHHHHHH-HHHHHHHHHTTCCCSEEEEECTTCSCTTSCTTSSCCCSC-----CTTHHHHHCCSCEEEESSCTTCHHHHH
T ss_pred hHHHHHHH-HHHHHHhccccccccceeeecccCCCccccccccccchh-----HHHHHHHHhCCCEEEECCCCChHHHHH
Confidence 12232221 222222 22 34444433221100000000001111 112233446999999999988777665
Q ss_pred HHH-cCcCeeEEchHHhhCCchhh
Q 017176 225 ALR-KGAHHVMVGRAAYQNPWYTL 247 (376)
Q Consensus 225 ~l~-~Gad~VmiGRa~l~~P~lf~ 247 (376)
.+. .+||+|.+||++|+||+|..
T Consensus 335 ~i~~~~aDlV~~gR~liaDP~l~~ 358 (399)
T d1oyaa_ 335 EEVKDKRTLIGYGRFFISNPDLVD 358 (399)
T ss_dssp HHTTSTTEEEECCHHHHHCTTHHH
T ss_pred HHHcCCCeEhHHHHHHHHCccHHH
Confidence 554 78999999999999999864
|
| >d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]
Probab=99.95 E-value=9e-28 Score=232.79 Aligned_cols=233 Identities=15% Similarity=0.069 Sum_probs=162.3
Q ss_pred CCCeecCCcEEEccCCC-------CChHHHHHHH-HHhCCCcEEEecceeeccccccc---------chhh---hhh-cc
Q 017176 2 VARQYLPPWFSVAPMMD-------WTDNHYRTLA-RLISKHAWLYTEMLAAETIIYQQ---------GNLD---RFL-AF 60 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~-------~td~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~~---------~~~~---~~~-~~ 60 (376)
||+++||||+++|||.. .++..+.++. ++.|| |+++||.+.+....... .... ++. .+
T Consensus 13 ig~~~LkNRiv~apm~~~~a~~g~p~~~~~~~y~~rA~gG-gliite~~~V~~~g~~~~~~~~l~~d~~i~~~k~l~~~i 91 (364)
T d1icpa_ 13 MGKFELCHRVVLAPLTRQRSYGYIPQPHAILHYSQRSTNG-GLLIGEATVISETGIGYKDVPGIWTKEQVEAWKPIVDAV 91 (364)
T ss_dssp ETTEEESCSEEECCCCCCCCGGGSCCHHHHHHHHHTCCTT-CEEECCCEECSGGGCCSTTCCBCSSHHHHHHHHHHHHHH
T ss_pred ECCEEeCCccEecccCCCcCCCCCCCHHHHHHHHHHHhCc-eEEEEccEEECCcccCCCCCceechhhhhhhHHHHHHHh
Confidence 68999999999999964 4677788886 45566 99999988776432211 1111 122 36
Q ss_pred CCCCCCEEEEecCCC--------------------------------------------------HHHHHHHHHHHHHCC
Q 017176 61 SPEQHPIVLQIGGSN--------------------------------------------------LDNLAKATELANAYN 90 (376)
Q Consensus 61 ~~~~~p~~vQL~g~~--------------------------------------------------~~~~~~aa~~~~~~G 90 (376)
|..+.++++||++.. .++|+++|++++++|
T Consensus 92 h~~g~~~~~QL~H~Gr~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~rA~~AG 171 (364)
T d1icpa_ 92 HAKGGIFFCQIWHVGRVSNKDFQPNGEDPISCTDRGLTPQIMSNGIDIAHFTRPRRLTTDEIPQIVNEFRVAARNAIEAG 171 (364)
T ss_dssp HHTTCEEEEEEECCTTSSCTTTSGGGCCCEESSSCCCCCEECTTSSCEECCCCCEECCTTTHHHHHHHHHHHHHHHHHTT
T ss_pred hcCCCceEEeeccCCcccccccccCCCCCccccccccccccccccccccCCCCCcccchhHHHHHHHHHHHHHHHHHHhC
Confidence 788999999997321 379999999999999
Q ss_pred CCEEEecCC---------CCCccccCCCCccccccCCHHHHHHHHHHHhcccC-ccEEEEecCCCCCC---cc--HHHHH
Q 017176 91 YDEINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDH---DS--YNQLC 155 (376)
Q Consensus 91 ~d~IeiN~g---------cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~-~pv~vKiR~g~~~~---~~--~~~~~ 155 (376)
||+||||++ +|.. |.|+|+||++++||.+++.||+++||+.++ .++.+++...-+.. .+ ....+
T Consensus 172 fDgVeIH~ahGyLl~QFlSp~t-N~RtDeYGGsleNR~Rf~~Eii~aIr~~~g~~~i~~r~s~~~~~~~~g~~~~~~~~l 250 (364)
T d1icpa_ 172 FDGVEIHGAHGYLIDQFMKDQV-NDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHYNEAGDTNPTALGL 250 (364)
T ss_dssp CSEEEEEECTTSHHHHHHCTTT-CCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCCSCHHHHHH
T ss_pred CCeEEEeccCcchhhceehhhc-CCcCccccchhhhhhhHHHHHhhhhhcccCCcceeEEecccccccCCcCcchHHHHH
Confidence 999999987 5664 689999999999999999999999999984 46777765421111 11 11112
Q ss_pred HHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeE
Q 017176 156 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVM 234 (376)
Q Consensus 156 ~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~Vm 234 (376)
. ....++..+++.+++............ .. .+....+++.. ++|||++|++ ++++++++++ .+||+|+
T Consensus 251 ~-~~~~~~~~d~~~~~~~~~~~~~~~~~~----~~----~~~~~~i~~~~-~~~vi~~g~~-~~~~ae~~l~~g~aD~V~ 319 (364)
T d1icpa_ 251 Y-MVESLNKYDLAYCHVVEPRMKTAWEKI----EC----TESLVPMRKAY-KGTFIVAGGY-DREDGNRALIEDRADLVA 319 (364)
T ss_dssp H-HHHHHGGGCCSEEEEECCSCCC----------C----CCCSHHHHHHC-CSCEEEESSC-CHHHHHHHHHTTSCSEEE
T ss_pred H-HHHHhhccceeeeeeecCccccccccc----cc----HHHHHHHHHhc-CCCEEEECCC-CHHHHHHHHHcCCCceeh
Confidence 2 122344566666666543321111100 00 11123444544 7899999986 8899999998 6799999
Q ss_pred EchHHhhCCchhh
Q 017176 235 VGRAAYQNPWYTL 247 (376)
Q Consensus 235 iGRa~l~~P~lf~ 247 (376)
+||++++||+|..
T Consensus 320 ~gR~~iadPd~~~ 332 (364)
T d1icpa_ 320 YGRLFISNPDLPK 332 (364)
T ss_dssp ESHHHHHCTTHHH
T ss_pred hHHHHHHCccHHH
Confidence 9999999999863
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=99.95 E-value=2.4e-28 Score=231.82 Aligned_cols=232 Identities=19% Similarity=0.211 Sum_probs=170.4
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeeccccc-------------------ccchhhh------
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIY-------------------QQGNLDR------ 56 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~-------------------~~~~~~~------ 56 (376)
++|++|+|||++|....-++..+..++... |+|.+.++.++.++... .+...+.
T Consensus 11 ~~Gl~l~nPi~~aAG~~~~~~~~~~~~~~~-g~G~v~~~ti~~~~~~gn~~pr~~~~~~~~~n~~g~~~~g~~~~~~~~~ 89 (311)
T d1ep3a_ 11 LPGLDLKNPIIPASGCFGFGEEYAKYYDLN-KLGSIMVKATTLHPRFGNPTPRVAETASGMLNAIGLQNPGLEVIMTEKL 89 (311)
T ss_dssp ETTEEESSSEEECTTSSTTSTTGGGTSCGG-GSSCEEEEEECSSCBCCCCSCCEEEETTEEEECCCCCBCCHHHHHHTHH
T ss_pred ECCEEcCCCcEECCCCCCCCHHHHHhhhhc-CccEEEEeeEcccccCCCCCCeEeeecccccccccccchhHHHHhhhhh
Confidence 478999999999954333444454444333 47888888776543110 0111111
Q ss_pred -hhccCCCCCCEEEEecCCCHHHHHHHHHHHHH-CCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC
Q 017176 57 -FLAFSPEQHPIVLQIGGSNLDNLAKATELANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN 134 (376)
Q Consensus 57 -~~~~~~~~~p~~vQL~g~~~~~~~~aa~~~~~-~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~ 134 (376)
.+.....+.|+++|+++++++++.++++.+.+ +|+|+||||+|||+.. +. +.....+++.+.++++++++.++
T Consensus 90 ~~~~~~~~~~pii~si~~~~~~~~~~~~~~~~~~~g~d~ielN~~cP~~~----~~-~~~~~~~~~~~~~~~~~v~~~~~ 164 (311)
T d1ep3a_ 90 PWLNENFPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVK----HG-GQAFGTDPEVAAALVKACKAVSK 164 (311)
T ss_dssp HHHHHHCTTSCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGG----GT-TEEGGGCHHHHHHHHHHHHHHCS
T ss_pred hhhhcccCCCcccccccchhhhHHHHHHHHHhhcccccccccccCCCccc----cc-ccccccCHHHHHHHHHHHHhccC
Confidence 11223457899999999999999999887754 6999999999999753 22 45567899999999999999999
Q ss_pred ccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCcccc------------CCCCCCCCCCCCcccHHHHHHHH
Q 017176 135 VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL------------NGISPAENRTIPPLKYEYYYALL 202 (376)
Q Consensus 135 ~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~------------~g~~~~~~~~~~~~~~~~v~~~~ 202 (376)
+|+.+|+++++.+.. ++ ++.++++|++.++++++.... .+..+..++.+.+..++++.+++
T Consensus 165 ~p~~vkl~~~~~~~~---~~----a~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~sG~~i~~~~l~~i~~i~ 237 (311)
T d1ep3a_ 165 VPLYVKLSPNVTDIV---PI----AKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVA 237 (311)
T ss_dssp SCEEEEECSCSSCSH---HH----HHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHH
T ss_pred CCeeeeecccccchH---HH----HHHHHHhhhheeEEEeeccccccccccccccccccCCCCCCCcccchhHHHHHHHh
Confidence 999999999887633 22 334567999999998764211 01111123445566688888888
Q ss_pred hhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchhh
Q 017176 203 RDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247 (376)
Q Consensus 203 ~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~ 247 (376)
++. ++|||+||||.|++|+.+++.+|||+||||||++.+||+|.
T Consensus 238 ~~~-~ipIig~GGI~s~~Da~~~i~~GAd~V~ig~~~~~~P~i~~ 281 (311)
T d1ep3a_ 238 QDV-DIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCP 281 (311)
T ss_dssp TTC-SSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHH
T ss_pred hhc-ceeEEEeCCcCCHHHHHHHHHcCCCEEEecHHHHcCChHHH
Confidence 765 99999999999999999999999999999999999999863
|
| >d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]
Probab=99.95 E-value=8.6e-27 Score=227.31 Aligned_cols=241 Identities=16% Similarity=0.114 Sum_probs=162.5
Q ss_pred CCCeecCCcEEEccCCC-------CChHHHHHHH-HHhCCCcEEEecceeeccccccc---------chhh---hhh-cc
Q 017176 2 VARQYLPPWFSVAPMMD-------WTDNHYRTLA-RLISKHAWLYTEMLAAETIIYQQ---------GNLD---RFL-AF 60 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~-------~td~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~~---------~~~~---~~~-~~ 60 (376)
||+++|||||++|||.. .|+..++++. ++.|| |+++||.+.+....... ..+. ++. .+
T Consensus 11 ig~~~lkNRiv~~pm~~~~~~~G~p~~~~~~~y~~rA~Gg-glii~~~~~V~~~~~~~~~~~~~~~d~~i~~~k~l~~~v 89 (380)
T d1q45a_ 11 MGRFDLSHRVVLAPMTRCRALNGVPNAALAEYYAQRTTPG-GFLISEGTMVSPGSAGFPHVPGIYSDEQVEAWKQVVEAV 89 (380)
T ss_dssp ETTEEESCSEEECCCCCCCSGGGCCCHHHHHHHHHTCCTT-CEEEEEEEESSTTCCCSTTCCBCSSHHHHHHHHHHHHHH
T ss_pred CCCEEecCCeEEcccCCCcCCCCCCCHHHHHHHHHHHhCC-EEEEEcceEECCCcCCCCCCcccCCHHHHHHHHHHHHHH
Confidence 68999999999999963 6788888886 55666 89999998775322211 1111 222 36
Q ss_pred CCCCCCEEEEecCCC-----------------------------------------------------HHHHHHHHHHHH
Q 017176 61 SPEQHPIVLQIGGSN-----------------------------------------------------LDNLAKATELAN 87 (376)
Q Consensus 61 ~~~~~p~~vQL~g~~-----------------------------------------------------~~~~~~aa~~~~ 87 (376)
|..+.++++||++.. .+.|+++|++++
T Consensus 90 h~~g~~~~~QL~H~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~f~~aA~~A~ 169 (380)
T d1q45a_ 90 HAKGGFIFCQLWHVGRASHAVYQPNGGSPISSTNKPISENRWRVLLPDGSHVKYPKPRALEASEIPRVVEDYCLSALNAI 169 (380)
T ss_dssp HHTTCEEEEEEECCTTSCCGGGSGGGCCCEESSSCCCCTTTCCEECTTSCEECCCCCEECCGGGHHHHHHHHHHHHHHHH
T ss_pred HhcCcceEEEeeeCCccccccccccCCCCcccccCccccCCceeecCCccccCCCCCeeCCHHHHHHHHHHHHHHHHHHH
Confidence 888999999996410 378999999999
Q ss_pred HCCCCEEEecCC---------CCCccccCCCCccccccCCHHHHHHHHHHHhcccCc-cEEEEecCCCCCC------ccH
Q 017176 88 AYNYDEINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV-PVSVKCRIGVDDH------DSY 151 (376)
Q Consensus 88 ~~G~d~IeiN~g---------cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~-pv~vKiR~g~~~~------~~~ 151 (376)
++|||+||||++ +|.. |.|+|+||++++||.+++.|||++||++++- .+.++... ..+. ...
T Consensus 170 ~aGfDgVEIh~ahGyLl~qFlSp~~-N~RtDeYGGs~enR~Rf~lEii~aIr~~vg~~~~~~~~~~-~~d~~~~~~~~~~ 247 (380)
T d1q45a_ 170 RAGFDGIEIHGAHGYLIDQFLKDGI-NDRTDQYGGSIANRCRFLKQVVEGVVSAIGASKVGVRVSP-AIDHLDATDSDPL 247 (380)
T ss_dssp HHTCSEEEEEECTTSHHHHHHCTTT-CCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECT-TCCGGGCCCSCHH
T ss_pred HhCcceeeeccchhhhHhhhhcccc-ccCccccCccccchhhhHHHHHHHHHHHccccCceEEEee-cccccccccccch
Confidence 999999999986 6774 5899999999999999999999999999843 33333332 2211 111
Q ss_pred H---HHHHHH--HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHH
Q 017176 152 N---QLCDFI--YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL 226 (376)
Q Consensus 152 ~---~~~~~i--~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l 226 (376)
+ ++.+.+ ...+...+++++.+........+.. ......+...+..+.+..+...++||+++|++ +++.+++++
T Consensus 248 ~~~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~~ik~~~~~pv~~~Gg~-~~~~ae~~l 325 (380)
T d1q45a_ 248 SLGLAVVGMLNKLQGVNGSKLAYLHVTQPRYHAYGQT-ESGRQGSDEEEAKLMKSLRMAYNGTFMSSGGF-NKELGMQAV 325 (380)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCSEEEEECCC----------------CHHHHHHHHHHHHSCSCEEEESSC-CHHHHHHHH
T ss_pred hhhhhhhhhhhHhhhhccccceeEEeccCcccccccc-cccccCchhhhHHHHHHHhhccCCcEEeCCCC-CHHHHHHHH
Confidence 1 111111 1234557889998875432111100 00011111112222233344458999999998 799999999
Q ss_pred H-cCcCeeEEchHHhhCCchhh
Q 017176 227 R-KGAHHVMVGRAAYQNPWYTL 247 (376)
Q Consensus 227 ~-~Gad~VmiGRa~l~~P~lf~ 247 (376)
+ ..||+|.+||++++||+|..
T Consensus 326 ~~G~~DlV~~gR~liaDPdlv~ 347 (380)
T d1q45a_ 326 QQGDADLVSYGRLFIANPDLVS 347 (380)
T ss_dssp HTTSCSEEEESHHHHHCTTHHH
T ss_pred HcCCccchhhhHHHHHCccHHH
Confidence 9 45999999999999999863
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.94 E-value=1.2e-25 Score=213.43 Aligned_cols=235 Identities=17% Similarity=0.173 Sum_probs=168.5
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccc-----------------------------
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQG----------------------------- 52 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~----------------------------- 52 (376)
+.|++|+|||++|+...-.+......+..+| +|.+++..++.+.....+.
T Consensus 5 ~~Gl~l~nPi~~Asg~~~~~~~~~~~~~~~G-~G~vv~ktvt~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~~n~~g~~~ 83 (312)
T d1gtea2 5 MAGLKFINPFGLASAAPTTSSSMIRRAFEAG-WGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSSFLNIELISE 83 (312)
T ss_dssp ETTEEESSSEEECSSGGGSSHHHHHHHHHHT-CSEEECCCBCCGGGCCCCCSSCEEECCTTCSCCSSCCSCEEECCCSCS
T ss_pred ECCEEcCCCcEECCcCCCCCHHHHHHHHHcC-CcEEEEeeecCCccccCCCCCcEEeccCCccccccccccccccccccc
Confidence 4689999999999865555655555555665 8999999887542111100
Q ss_pred -hhhhhh-------ccCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHH
Q 017176 53 -NLDRFL-------AFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 124 (376)
Q Consensus 53 -~~~~~~-------~~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~e 124 (376)
....++ ...+...+++.+..+.+++++.++++.++++|+|+||||++||+.. ..++ +|..+..+++.+.+
T Consensus 84 ~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~~~~gad~lelN~scPn~~-~~~~-~~~~~~~~~~~~~~ 161 (312)
T d1gtea2 84 KTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGM-GERG-MGLACGQDPELVRN 161 (312)
T ss_dssp SCHHHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCC-C------SBGGGCHHHHHH
T ss_pred cchhhhhhhhccccccccccccccccccccchhHHHHHHHHhccCCCCeEeeccCCCCcc-cccc-cchhhhhhHHHHHH
Confidence 001111 1122334445555688999999999999999999999999999864 3333 58888899999999
Q ss_pred HHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccC------------------CCCCCC
Q 017176 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN------------------GISPAE 186 (376)
Q Consensus 125 iv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~------------------g~~~~~ 186 (376)
+++++++.+++||.||+++.+++ ..++ +++++++|++.|+++++..... +.++-.
T Consensus 162 i~~~v~~~~~~pv~vKl~~~~~~---~~~i----~~~~~~~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~s 234 (312)
T d1gtea2 162 ICRWVRQAVQIPFFAKLTPNVTD---IVSI----ARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVS 234 (312)
T ss_dssp HHHHHHHHCSSCEEEEECSCSSC---HHHH----HHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEE
T ss_pred HHHHHhhccCCceeecccccchh---HHHH----HHHHHHhcccceEEEeeccccccccccccccccccccccccccccc
Confidence 99999999999999999987654 3333 3445679999999986532100 001111
Q ss_pred CCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC-Cchh
Q 017176 187 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYT 246 (376)
Q Consensus 187 ~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~-P~lf 246 (376)
++.+.+..++.++++.+..+++|||++|||.|++|+.+++..|||+||||++++.+ |.++
T Consensus 235 G~~i~~~al~~v~~~~~~~~~ipIi~~GGI~~~~d~~~~l~aGA~~Vqv~ta~~~~G~~~i 295 (312)
T d1gtea2 235 GTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVI 295 (312)
T ss_dssp SGGGHHHHHHHHHHHHHHSTTCCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTSCTTHH
T ss_pred CcCcchhhHHHHHHHHHHcCCCcEEEEcCCCCHHHHHHHHHcCCCeeEECHhhhccChHHH
Confidence 23345556788888888887899999999999999999999999999999999988 5543
|
| >d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme A [TaxId: 1358]
Probab=99.85 E-value=2.1e-20 Score=176.78 Aligned_cols=233 Identities=15% Similarity=0.099 Sum_probs=162.9
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccc-------------------cchhhh------
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ-------------------QGNLDR------ 56 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~-------------------~~~~~~------ 56 (376)
+.|++|+|||++|......+.........+| +|.+++..++.++...+ +...+.
T Consensus 6 ~~Gl~l~nPi~~aag~~~~~~~~~~~~~~~G-~G~vv~ktit~~~~~gn~~pr~~~~~~~~~n~~G~~n~g~~~~~~~~~ 84 (311)
T d1juba_ 6 FANAKFANPFMNASGVHCMTIEDLEELKASQ-AGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLGFDYYLDYVL 84 (311)
T ss_dssp ETTEEESSSEEECTTSSCSSHHHHHHHHHSS-CSCCBCCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSCHHHHHHHHH
T ss_pred ECCEecCCCCEECCCCCCCCHHHHHHHHHCC-CcEEEEEEEeeccccCCCCCeEEEccccchhhhhhcCchhHHHHHHHH
Confidence 3589999999999765544555544445555 88888887765532100 001111
Q ss_pred -hhccCCCCCCEEEEecCCCHHHHHHHHHHHHHCC-CCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC
Q 017176 57 -FLAFSPEQHPIVLQIGGSNLDNLAKATELANAYN-YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN 134 (376)
Q Consensus 57 -~~~~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G-~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~ 134 (376)
..+....+.|+++++.+.+.+++...++.+++++ +|.+|||++||+... +..+..+++.+.++++++++.++
T Consensus 85 ~~~~~~~~~~pvi~si~~~~~~~~~~~~~~~~~~~~ad~ielNiscPn~~~------~~~~~~~~~~~~~~~~~v~~~~~ 158 (311)
T d1juba_ 85 KNQKENAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPG------EPQLAYDFEATEKLLKEVFTFFT 158 (311)
T ss_dssp HHHHHTCSSSCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSS------CCCGGGCHHHHHHHHHHHTTTCC
T ss_pred HhhhhcccCCCceeeccccccchhHHHHHHHhhccccceeeeccccccccc------cccccccHHHHHHHHHHhhcccc
Confidence 1122345779999999999999999888888876 799999999998532 22334789999999999999999
Q ss_pred ccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCcc---------------ccCCCCCCCCCCCCcccHHHHH
Q 017176 135 VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA---------------LLNGISPAENRTIPPLKYEYYY 199 (376)
Q Consensus 135 ~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~---------------~~~g~~~~~~~~~~~~~~~~v~ 199 (376)
.|+.+|+.+.++. .++.. +++.+.+.|++.++...... ...|.++..+..+.+.....+.
T Consensus 159 ~pv~vKl~p~~~~-~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~sg~~l~~~al~~i~ 233 (311)
T d1juba_ 159 KPLGVKLPPYFDL-VHFDI----MAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVR 233 (311)
T ss_dssp SCEEEEECCCCSH-HHHHH----HHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHH
T ss_pred cceeecccccchh-hHHHH----HHHHHHhhccceEeccccccccccccccccccccccccccCCccccccCchHHHHHH
Confidence 9999999986542 22333 24445678899887654321 0011111122233444456677
Q ss_pred HHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC-Cchh
Q 017176 200 ALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYT 246 (376)
Q Consensus 200 ~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~-P~lf 246 (376)
++.+.. +++|||++|||+|++|+.+++..|||.||++++++.+ |+++
T Consensus 234 ~i~~~~~~~~~Iig~GGI~s~~Da~~~i~aGA~~Vql~tal~~~Gp~~i 282 (311)
T d1juba_ 234 AFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIF 282 (311)
T ss_dssp HHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHCTHHH
T ss_pred HHHHhcCCCeeEEecCCcCCHHHHHHHHHcCCCceeeeHhhHhcChHHH
Confidence 776654 4799999999999999999999999999999999765 8864
|
| >d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.79 E-value=2.3e-18 Score=162.73 Aligned_cols=230 Identities=15% Similarity=0.157 Sum_probs=153.7
Q ss_pred CCCeecCCcEEEccCC-CCChHHHHHHHHHhCCCcEEEecceeecccccc-------------------cchhhhhh---
Q 017176 2 VARQYLPPWFSVAPMM-DWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ-------------------QGNLDRFL--- 58 (376)
Q Consensus 2 i~~~~l~nri~lAPM~-~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~-------------------~~~~~~~~--- 58 (376)
+.|++|+|||++|.-. +-+....+.+ ... |+|.+++..++.++...+ +...+.++
T Consensus 6 ~~Gl~l~nPi~~aaG~~~~~~~~~~~~-~~~-g~g~vv~ktit~~p~~gnp~Pr~~~~~~~~~N~~G~~n~G~~~~~~~l 83 (312)
T d2b4ga1 6 ILGHEFSNPFMNAAGVLCTTEEDLRRM-TES-ESGSLIGKSCTLAPRTGNPEPRYFGLPLGSINSMGLPNLGVDFYLSYA 83 (312)
T ss_dssp ETTEEESSSEEECTTSSCSSHHHHHHH-HHS-SCSCEEEEEECSSCBCCSCSCCEEEETTEEEECCCCCBSCHHHHHHHH
T ss_pred ECCEECCCCcEeCcCCCCCCHHHHHHH-HHc-CCCEEEeCcccccCCCCCCCCeEEecCchheeccccCcchHHHHHHHH
Confidence 3589999999998532 2233344444 444 478888887765532110 01111111
Q ss_pred -cc-CCCCCCEEEEecCCCHHHHHHHHHHH---HHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc
Q 017176 59 -AF-SPEQHPIVLQIGGSNLDNLAKATELA---NAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT 133 (376)
Q Consensus 59 -~~-~~~~~p~~vQL~g~~~~~~~~aa~~~---~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~ 133 (376)
.. ...+.|+++++.|.+.+++.+.++.+ .+.++|+||||.+||+... +..+-.+++.+.++++++++.+
T Consensus 84 ~~~~~~~~~pii~si~g~~~~~~~~~~~~~~~~~~~~ad~iElNiScPn~~~------~~~~~~~~~~~~~i~~~v~~~~ 157 (312)
T d2b4ga1 84 AQTHDYSRKPLFLSMSGLSVEESVEMVKKLVPITKEKGTILELNLSCPNVPG------KPQVGYDFDTTRTYLQKVSEAY 157 (312)
T ss_dssp HHTCCTTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCSTT------CCCGGGCHHHHHHHHHHHHHHH
T ss_pred HHhhhccccceeccccccccccHHHHHHHHHHhhhhcccceeeccccCCcCc------chhhhccHHHHHHHHHHhhccc
Confidence 12 22467999999999888777766643 3457899999999998531 2234478999999999999999
Q ss_pred CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCc-----------c-------ccCCCCCCCCCCCCcccH
Q 017176 134 NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK-----------A-------LLNGISPAENRTIPPLKY 195 (376)
Q Consensus 134 ~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~-----------~-------~~~g~~~~~~~~~~~~~~ 195 (376)
++|+.+|+.+..+. ..++.. .+.+.+..+++.+...... . ..+|.++ +.+.+...
T Consensus 158 ~~pi~vKl~p~~~~-~~~~~~---~~~~~~~~~~~~i~~~nt~~~~~~~~~~~~~~~~~~~~~~GGlSG---~~l~~~al 230 (312)
T d2b4ga1 158 GLPFGVKMPPYFDI-AHFDMA---AAVLNDFPLVKFITCVNSIGNGLVIDPANETVVIKPKQGFGGLGG---KYVLPTAL 230 (312)
T ss_dssp CSCEEEEECCCCCH-HHHHHH---HHHHTTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEEE---GGGHHHHH
T ss_pred cccceeccccccch-hHHHHH---HHHHHhhhhhhhhhhcccccccccccccCCCccccccccccCccc---ccccchhh
Confidence 99999999985443 222222 2233344455555432110 0 0123332 33445557
Q ss_pred HHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC-Cchh
Q 017176 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYT 246 (376)
Q Consensus 196 ~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~-P~lf 246 (376)
..++++.+..++.|||++|||.|++|+.+++..|||.||++++++.+ |.++
T Consensus 231 ~~v~~~~~~~~~~~Iig~GGI~s~~Da~e~i~aGAs~Vqv~Tal~~~Gp~~i 282 (312)
T d2b4ga1 231 ANVNAFFRRCPDKLVFGCGGVYSGEEAFLHILAGASMVQVGTALHDEGPIIF 282 (312)
T ss_dssp HHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTEEEEEESHHHHHHCTTHH
T ss_pred HHHHHHHHHcCCCceeecCCcCCHHHHHHHHHcCCChheeehhhHhcCcHHH
Confidence 78888888888899999999999999999999999999999999755 8875
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.76 E-value=5.4e-18 Score=165.83 Aligned_cols=229 Identities=13% Similarity=0.106 Sum_probs=149.6
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeeccccccc-ch--------------------hhh----
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQ-GN--------------------LDR---- 56 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~-~~--------------------~~~---- 56 (376)
+.|++++|||.+|.-.+-+-..++.+ ...| .|.+.+..++.++-.-+. +. .+.
T Consensus 55 v~Gl~f~NPiglAAG~dk~~~~i~~~-~~lG-fG~ve~gTvT~~p~~GNp~PR~~r~~~~~~liN~~Gl~n~G~~~~~~~ 132 (409)
T d1tv5a1 55 IKHLDFINPFGVAAGFDKNGVCIDSI-LKLG-FSFIEIGTITPRGQTGNAKPRIFRDVESRSIINSCGFNNMGCDKVTEN 132 (409)
T ss_dssp ETTEEESSSEEECTTTTTTCSSHHHH-HTTT-CSEEEEEEECSSCBCCSCSCCEEEETTTTEEEECCCSCBSCHHHHHHH
T ss_pred ECCeecCCcCEeccccCCCHHHHHHH-HhcC-CCeEEeeeeeeccccCCCCccccccccccccccccCCCcccHHHHHHH
Confidence 46899999999995322122334443 4445 899999988876422110 00 000
Q ss_pred hh------c--cCCCCCCEEEEecCC----CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHH
Q 017176 57 FL------A--FSPEQHPIVLQIGGS----NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 124 (376)
Q Consensus 57 ~~------~--~~~~~~p~~vQL~g~----~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~e 124 (376)
+. . ......++.+++..+ +..+....+......++|+++||.+||+.. |...+.+++.+.+
T Consensus 133 l~~~~~~~~~~~~~~~~i~gi~~~~~~~~~~~~~~~~~~~~~~~~~aD~~elNiScPNt~-------glr~~~~~~~L~~ 205 (409)
T d1tv5a1 133 LILFRKRQEEDKLLSKHIVGVSIGKNKDTVNIVDDLKYCINKIGRYADYIAINVSSPNTP-------GLRDNQEAGKLKN 205 (409)
T ss_dssp HHHHHHHHHHCSTTTTCEEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCCTTST-------TGGGGGSHHHHHH
T ss_pred HHHHhhhhhhcccccccccccccccccchhHHHHHHHHHHHHHhhcccceeecccccccc-------ccccccCHHHHHH
Confidence 00 0 112234456666543 233333333344445689999999999863 4444578999999
Q ss_pred HHHHHhccc---------------------------------------------------CccEEEEecCCCCCCccHHH
Q 017176 125 AMSVIAANT---------------------------------------------------NVPVSVKCRIGVDDHDSYNQ 153 (376)
Q Consensus 125 iv~~v~~~~---------------------------------------------------~~pv~vKiR~g~~~~~~~~~ 153 (376)
+++++++.. ..|+.||+.+.+++ +++.+
T Consensus 206 ll~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ppi~vKlsPd~~~-~~i~~ 284 (409)
T d1tv5a1 206 IILSVKEEIDNLEKNNIMNDESTYNEDNKIVEKKNNFNKNNSHMMKDAKDNFLWFNTTKKKPLVFVKLAPDLNQ-EQKKE 284 (409)
T ss_dssp HHHHHHHHHHHHC--------------------------------------CCCCSSSSSCCEEEEEECSCCCH-HHHHH
T ss_pred HHHHHHHHHHhhhcccccccccccccchhhhhhccccccccccccccchhhhhhccccccCCceEEEeCCCCCc-hhhHH
Confidence 999987532 23899999986654 33433
Q ss_pred HHHHHHHHhhcCCccEEEEccCccc----------cCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHH
Q 017176 154 LCDFIYKVSSLSPTRHFIIHSRKAL----------LNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEV 222 (376)
Q Consensus 154 ~~~~i~~~~e~~Gvd~I~vh~r~~~----------~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da 222 (376)
+ +.++.+.|+|.+++...+.. .+|.++ +.+.+.....++++.+.. +++|||++|||.|++||
T Consensus 285 i----~~~~~~~g~dgii~~Nt~~~~~~~~~~~~~~GGlSG---~~l~~~al~~v~~v~~~~~~~ipIIGvGGI~s~~Da 357 (409)
T d1tv5a1 285 I----ADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSG---AKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDA 357 (409)
T ss_dssp H----HHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEE---HHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHH
T ss_pred H----HHHHHhccccceecccccccccccccccccCCcccc---hhHHHHHHHHHHHHHHHcCCCceEEEECCCCCHHHH
Confidence 3 44566899999999865421 122222 334455567788887765 36999999999999999
Q ss_pred HHHHHcCcCeeEEchHHhhC-Cchhh
Q 017176 223 NAALRKGAHHVMVGRAAYQN-PWYTL 247 (376)
Q Consensus 223 ~~~l~~Gad~VmiGRa~l~~-P~lf~ 247 (376)
.+++..|||+|||+++++.+ |.++.
T Consensus 358 ~e~i~AGAs~VQv~T~li~~Gp~~v~ 383 (409)
T d1tv5a1 358 LEKIEAGASVCQLYSCLVFNGMKSAV 383 (409)
T ss_dssp HHHHHTTEEEEEESHHHHHHGGGHHH
T ss_pred HHHHHcCCCHHhhhhHHHhcChHHHH
Confidence 99999999999999998654 98863
|
| >d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=1.7e-17 Score=158.26 Aligned_cols=229 Identities=14% Similarity=0.120 Sum_probs=147.6
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeeccccccc-ch--------------------hhh---h
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQ-GN--------------------LDR---F 57 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~-~~--------------------~~~---~ 57 (376)
+.|++++||+++|.-.+-+...++. +... |+|.+.|..++.+...... +. ... .
T Consensus 49 ~~Gl~~~NPiglAsG~~~~~e~i~~-~~~~-G~G~vv~ktit~~p~~gnp~pr~~~~~~~~~~iN~~gl~n~g~~~~~~~ 126 (336)
T d1f76a_ 49 CMGLTFKNPLGLAAGLDKDGECIDA-LGAM-GFGSIEIGTVTPRPQPGNDKPRLFRLVDAEGLINRMGFNNLGVDNLVEN 126 (336)
T ss_dssp ETTEEESSSEEECTTSSTTCCCHHH-HHHT-TCSEEEEEEECSSCBCCSCSCCEEEETTTTEEEECCCCCBCCHHHHHHH
T ss_pred ECCeecCCCCEeCcccCCChHHHHH-HHhh-cccccccccccccccCCCCCcccccccccccchhhccCccccHHHHHHH
Confidence 3579999999999643323333333 3444 4899999988765432111 00 011 1
Q ss_pred hccCCCCCCEEEEecCCC-------HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHH-
Q 017176 58 LAFSPEQHPIVLQIGGSN-------LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI- 129 (376)
Q Consensus 58 ~~~~~~~~p~~vQL~g~~-------~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v- 129 (376)
......+.|+++++.++. .+++..+.+.+. .++|++|||.+||+.. |.....+.+.+.+.++++
T Consensus 127 ~~~~~~~~~l~v~I~~~~~~~~~~a~~d~~~~~~~~~-~~ad~iElNiScPN~~-------g~~~~~~~~~l~~~~~~~~ 198 (336)
T d1f76a_ 127 VKKAHYDGVLGINIGKNKDTPVEQGKDDYLICMEKIY-AYAGYIAINISSPNTP-------GLRTLQYGEALDDLLTAIK 198 (336)
T ss_dssp HHHCCCCSEEEEEECCCTTSCGGGTHHHHHHHHHHHG-GGCSEEEEECCCSSST-------TGGGGGSHHHHHHHHHHHH
T ss_pred hhcccccceEEEEEeccCCcchHHHHHHHHHHHHHhh-cccceeeecccchhhh-------cccccccchhhccchhhhh
Confidence 123345678999998764 456666666554 4689999999999853 222223444444444333
Q ss_pred --------hcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCcc------------ccCCCCCCCCCC
Q 017176 130 --------AANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA------------LLNGISPAENRT 189 (376)
Q Consensus 130 --------~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~------------~~~g~~~~~~~~ 189 (376)
+..+++|+.+|+....+. .++.+. +..+.+.|++.++.-..+. ..+|.++ +.
T Consensus 199 ~~~~~~~~~~~~~~Pv~vKlsp~~~~-~~i~~~----a~~~~~~g~~gv~~int~~~~~~~~~~~~~~~~GGlSG---~~ 270 (336)
T d1f76a_ 199 NKQNDLQAMHHKYVPIAVKIAPDLSE-EELIQV----ADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSG---RP 270 (336)
T ss_dssp HHHHHHHHHHTSCCCEEEECCSCCCH-HHHHHH----HHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEE---GG
T ss_pred hhhhhhhhhccCcCCcccccchhhhh-hhhhhh----HHHHHhcCccchhhhhhhhccccccccccccccccccc---ch
Confidence 233578999999986542 233333 3345578999998754321 1122222 34
Q ss_pred CCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHH-hhCCchhhH
Q 017176 190 IPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA-YQNPWYTLG 248 (376)
Q Consensus 190 ~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~-l~~P~lf~~ 248 (376)
+.+.....++++.+.. +++|||++|||.|++|+.+++..|||+||||+++ +.+|.++.+
T Consensus 271 i~~~al~~v~~v~~~~~~~ipIIG~GGI~s~~Da~e~i~aGAsaVQv~Tal~~~Gp~ii~~ 331 (336)
T d1f76a_ 271 LQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKE 331 (336)
T ss_dssp GHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCCCeEEEECCCCCHHHHHHHHHcCCcHHHHHHHHHhcChHHHHH
Confidence 4555566777777654 3799999999999999999999999999999997 578998643
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=2e-17 Score=159.69 Aligned_cols=234 Identities=12% Similarity=0.067 Sum_probs=141.5
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeeccccccc-ch--------------------hhhhh--
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQ-GN--------------------LDRFL-- 58 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~-~~--------------------~~~~~-- 58 (376)
+.|++++||+++|.-..-+...++.+ ...| +|.+.|..++.++..... +. .+.+.
T Consensus 54 ~~Gl~~~nPi~lAsG~~~~~~~i~~~-~~~G-~G~vv~kTit~~~~~gn~~pr~~~~~~~~~~~n~~g~~~~g~~~~~~~ 131 (367)
T d1d3ga_ 54 VLGHKFRNPVGIAAGFDKHGEAVDGL-YKMG-FGFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINRYGFNSHGLSVVEHR 131 (367)
T ss_dssp ETTEEESSSEEECTTSSTTSSSHHHH-HHHT-CSEEEEEEECSSCBCCSCSCCEEEEGGGTEEEECCCCCBCCHHHHHHH
T ss_pred ECCEecCCCcEeCcCCCCCHHHHHHH-hhcC-CcEEeeccccccccccCCchhhhhhccccccccccCcCCcchHHHHHH
Confidence 46899999999996322223334443 4445 899999988865432111 00 00000
Q ss_pred ---------ccCCCCCCEEEEecCCC----H-HHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHH
Q 017176 59 ---------AFSPEQHPIVLQIGGSN----L-DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 124 (376)
Q Consensus 59 ---------~~~~~~~p~~vQL~g~~----~-~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~e 124 (376)
+....+.|+++++.++. . +++..+.+ ..+.++|.+|+|++||+....+.......+........+
T Consensus 132 ~~~~~~~~~~~~~~~~pv~vsi~~~~~~~~~~~~~~~~~~-~~~~~ad~lelNiScPn~~~~~~~~~~~~~~~~~~~~~~ 210 (367)
T d1d3ga_ 132 LRARQQKQAKLTEDGLPLGVNLGKNKTSVDAAEDYAEGVR-VLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQ 210 (367)
T ss_dssp HHTTHHHHHHHHHTTCCEEEEECCCTTCSCHHHHHHHHHH-HHGGGCSEEEEESCCTTSTTC----CHHHHHHHHHHHHH
T ss_pred HHHHhhhcccccccCceEEEEeccccccHHHHHHHHHHHH-HhhhcccccccccccccccccccccccchhhhHHHHHHH
Confidence 11234569999998752 2 44444444 445689999999999986422221111111111122222
Q ss_pred HHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccc------------cCCCCCCCCCCCCc
Q 017176 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL------------LNGISPAENRTIPP 192 (376)
Q Consensus 125 iv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~------------~~g~~~~~~~~~~~ 192 (376)
....++..+++|+.+|+.+..+. .++.++ ++.+.++|++.|++-..+.. .+|.++ ..+++
T Consensus 211 ~~~~~~~~~~~Pv~vKlsP~~~~-~~i~~~----a~~~~~~g~~gi~~~nt~~~~~~~~~~~~~~~~gg~sG---~~~~~ 282 (367)
T d1d3ga_ 211 ERDGLRRVHRPAVLVKIAPDLTS-QDKEDI----ASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSG---KPLRD 282 (367)
T ss_dssp HHHTSCGGGCCEEEEEECSCCCH-HHHHHH----HHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEE---GGGHH
T ss_pred hhhhcccccCCccccccCcccch-hhhhhh----HHHHHhhhhheeeccccccccccccccccccccccccc---ccchh
Confidence 22333334578999999986432 223333 33455789999998654321 112221 23344
Q ss_pred ccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHH-hhCCchh
Q 017176 193 LKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA-YQNPWYT 246 (376)
Q Consensus 193 ~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~-l~~P~lf 246 (376)
.....+..+.+.. .++|||++|||.|++|+.+++..|||.|||++++ +.+|.++
T Consensus 283 i~l~~v~~v~~~~~~~ipIig~GGI~s~~Da~e~i~aGAs~VQi~Ta~~~~Gp~ii 338 (367)
T d1d3ga_ 283 LSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVV 338 (367)
T ss_dssp HHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCTHHH
T ss_pred hhHHHHHHHHHHhCCCccEEEECCCCCHHHHHHHHHcCCCHHHhhHHHHhcCcHHH
Confidence 4456666665543 3799999999999999999999999999999997 5789985
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=99.49 E-value=3.6e-13 Score=127.32 Aligned_cols=219 Identities=14% Similarity=0.022 Sum_probs=123.1
Q ss_pred CCCeecCCcEEEccCCCCCh-------HHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCC
Q 017176 2 VARQYLPPWFSVAPMMDWTD-------NHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGS 74 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td-------~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~ 74 (376)
|.+.+++.||++|||.+.+. ..+...+.+.| ......++.+.. .......................++...
T Consensus 29 i~G~~l~~Pi~is~Ms~g~~~~~~~~~~alA~aA~~~g-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (329)
T d1p0ka_ 29 IGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAG-IPLAVGSQMSAL-KDPSERLSYEIVRKENPNGLIFANLGSE 106 (329)
T ss_dssp ETTEEESCSEEEECCCCSCHHHHHHHHHHHHHHHHHHT-CCEECCCCTTTT-TCHHHHHHHHHHHHHCSSSCEEEEEETT
T ss_pred ECCEEcCCceEECCHHHhhhhccHHHHHHHHHHHHHcC-CCeecccccccc-hhHHHHhhhhhHhhhCCcceEEEeeccc
Confidence 45788999999999977552 22334444554 333333222111 1000001111111112233445555443
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 154 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~ 154 (376)
.. .....+.++..|++.+.+|..||....... |. .+.....+.++.+++.++.|+.+|.-.+..+ .++.
T Consensus 107 ~~--~~~~~~~~~~~g~~ai~~~~~~~~~~~~~~---~~---~~~~~~~~~i~~i~~~~~~~vivk~v~~~~~---~~~a 175 (329)
T d1p0ka_ 107 AT--AAQAKEAVEMIGANALQIHLNVIQEIVMPE---GD---RSFSGALKRIEQICSRVSVPVIVKEVGFGMS---KASA 175 (329)
T ss_dssp CC--HHHHHHHHHHTTCSEEEEEECTTTTC--------------CTTHHHHHHHHHHHCSSCEEEEEESSCCC---HHHH
T ss_pred hh--HHHHHHHHHHcCCCEEEecccccchhhhcc---cc---ccccchHHHHHHHHHHcCCCcEEEecCCcch---HHHH
Confidence 32 222345567789999999999997532221 21 2334456777888888889999996554333 2222
Q ss_pred HHHHHHHhhcCCccEEEEcc--Ccccc--------CCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHH
Q 017176 155 CDFIYKVSSLSPTRHFIIHS--RKALL--------NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNA 224 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~vh~--r~~~~--------~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~ 224 (376)
. + +.++|+|+|.|.+ ++... .+........++ ....+.++....+++|||+.|||+++.|+.+
T Consensus 176 ~----~-~~~~GaD~i~v~~~gG~~~~~~~~~~~~~~~g~~~~~~~~--~~~~l~~~~~~~~~v~viadGGIr~g~Dv~K 248 (329)
T d1p0ka_ 176 G----K-LYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGIS--TAASLAEIRSEFPASTMIASGGLQDALDVAK 248 (329)
T ss_dssp H----H-HHHHTCSEEEEEC---------------CCGGGGTTCSCC--HHHHHHHHHHHCTTSEEEEESSCCSHHHHHH
T ss_pred H----H-HHhcCCCEEEEcCCCCCCccccchhhcccCccchhHhHHH--HHHHHHHHHhhcCCceEEEcCCcccHHHHHH
Confidence 2 2 2368999999954 32110 000000001111 2344555555566899999999999999999
Q ss_pred HHHcCcCeeEEchHHh
Q 017176 225 ALRKGAHHVMVGRAAY 240 (376)
Q Consensus 225 ~l~~Gad~VmiGRa~l 240 (376)
++..|||+||+||+++
T Consensus 249 AlalGAdaV~iGr~~l 264 (329)
T d1p0ka_ 249 AIALGASCTGMAGHFL 264 (329)
T ss_dssp HHHTTCSEEEECHHHH
T ss_pred HHHcCCCchhccHHHH
Confidence 9999999999999765
|
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.35 E-value=6.1e-12 Score=119.83 Aligned_cols=208 Identities=13% Similarity=0.150 Sum_probs=130.4
Q ss_pred CCeecCCcEEEccCCCCC------hHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCC-C
Q 017176 3 ARQYLPPWFSVAPMMDWT------DNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGS-N 75 (376)
Q Consensus 3 ~~~~l~nri~lAPM~~~t------d~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~-~ 75 (376)
-|.++.-||+++||++.+ +..+.+.+.++| ..+....+-+. ..+...... .+.+...|++.. +
T Consensus 64 lG~~l~~P~~Iapmtgg~~~~~~~~~~lA~aA~~~g-~~~~~~s~s~~--------~~e~v~~~~-~~~~~~~ql~~~~~ 133 (349)
T d1tb3a1 64 QGQEISAPICISPTAFHSIAWPDGEKSTARAAQEAN-ICYVISSYASY--------SLEDIVAAA-PEGFRWFQLYMKSD 133 (349)
T ss_dssp TTEEESSSEEECCCSCGGGTCTTTHHHHHHHHHHHT-CCEEECTTCSS--------CHHHHHHHS-TTCCEEEECCCCSC
T ss_pred CCcCccceEEEcchhcccccccchhhHHHHhhhhcc-cceeecccccc--------cchhhhhhc-cCCCeeeeeecccC
Confidence 367889999999999743 445666677776 44543332211 111111212 356788999864 4
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCccccC----------------------CCC---ccccccCCHHHHHHHHHHHh
Q 017176 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAG----------------------HGC---FGVSLMLDPKFVGEAMSVIA 130 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r----------------------~g~---yG~~l~~~~~~~~eiv~~v~ 130 (376)
.+...+..++++++|+..+-+....|..-... ... ....-..++....+-++.++
T Consensus 134 ~~~~~~~i~~~~~~g~~a~~~tvd~~~~~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 213 (349)
T d1tb3a1 134 WDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILLKDLRALKEEKPTQSVPVSFPKASFCWNDLSLLQ 213 (349)
T ss_dssp TTHHHHHHHHHHHHTCCCEEEECSCSSCCCCHHHHHTTCCCCC----CCSCCCCC-------------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccccCchhhcchhhhhhccccCCcccchhhhhhhhhccccccccccccCCCCCHHHHHHHH
Confidence 45556677888899999988876655321000 000 00000011122346778889
Q ss_pred cccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEc--cCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CC
Q 017176 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDF-PD 207 (376)
Q Consensus 131 ~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh--~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ 207 (376)
+.++.|+.+|--.+. ++. ..+.++|+|.|.|+ |+.+...+ +...+.+.++++.+ .+
T Consensus 214 ~~~~~pii~Kgi~~~------~da-----~~a~~~G~d~i~vsnhggr~~d~~----------~~~~~~l~~i~~~~~~~ 272 (349)
T d1tb3a1 214 SITRLPIILKGILTK------EDA-----ELAMKHNVQGIVVSNHGGRQLDEV----------SASIDALREVVAAVKGK 272 (349)
T ss_dssp TTCCSCEEEEEECSH------HHH-----HHHHHTTCSEEEECCGGGTSSCSB----------CCHHHHHHHHHHHHTTS
T ss_pred HhcCCCcccchhhhh------HHH-----HHHHHhhccceeeecccccccccc----------ccchhhcceeeeccCCC
Confidence 889999999955432 222 22347999999995 44432211 11255666665544 36
Q ss_pred CeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017176 208 LTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 208 ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
+|||+.|||+++.|+.++|..|||+|+|||++|.
T Consensus 273 ~~iiadGGIR~G~Dv~KALALGA~~V~igrp~L~ 306 (349)
T d1tb3a1 273 IEVYMDGGVRTGTDVLKALALGARCIFLGRPILW 306 (349)
T ss_dssp SEEEEESSCCSHHHHHHHHHTTCSCEEESHHHHH
T ss_pred eeEEeccCcCcHHHHHHHHHcCCCEEEEChHHHH
Confidence 9999999999999999999999999999999874
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Probab=99.34 E-value=5.4e-12 Score=117.68 Aligned_cols=218 Identities=14% Similarity=0.067 Sum_probs=118.8
Q ss_pred CCeecCCcEEEccCCCCChH------HHHHHHHHhCCCcEEEecceeecccccccchhhhh--hccCCCCCCEEEEecCC
Q 017176 3 ARQYLPPWFSVAPMMDWTDN------HYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRF--LAFSPEQHPIVLQIGGS 74 (376)
Q Consensus 3 ~~~~l~nri~lAPM~~~td~------~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~--~~~~~~~~p~~vQL~g~ 74 (376)
.|.++++||++|||++.+.. .+...+.+.| ..+...+..... ........ +.....+.++..|+...
T Consensus 31 ~G~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (310)
T d1vcfa1 31 LGKTLKAPFLIGAMTGGEENGERINLALAEAAEALG-VGMMLGSGRILL----ERPEALRSFRVRKVAPKALLIANLGLA 105 (310)
T ss_dssp TTEEESSSEEECCCC---CCHHHHHHHHHHHHHHHT-CEEEEEECHHHH----HCTTTHHHHCCTTTCSSSCEEEEEEGG
T ss_pred CCEEcCCCEEEcChhhhhhhhhHHHHHHHHHHHHcC-CCeEeccchhcc----hhhhhhcccchHHhcCCcceeeeeccc
Confidence 47789999999999875432 2233345554 434332221110 01111111 11122356788888765
Q ss_pred CHHHH--HHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHH
Q 017176 75 NLDNL--AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~--~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~ 152 (376)
..... ....+..+..+++.+.+|..||.......+ .......+....+ ...+.|+.+|.-.+..+ .+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~p~~~k~v~~~~~---~e 174 (310)
T d1vcfa1 106 QLRRYGRDDLLRLVEMLEADALAFHVNPLQEAVQRGD-------TDFRGLVERLAEL-LPLPFPVMVKEVGHGLS---RE 174 (310)
T ss_dssp GGGTCCHHHHHHHHHHHTCSEEEEECCHHHHHHTTSC-------CCCTTHHHHHHHH-CSCSSCEEEECSSSCCC---HH
T ss_pred chhhhhHHHHHHHHHhcCCCeeccccccchhhhcccc-------cccccHHHHHHHH-hhccCCceeeeecCccc---HH
Confidence 33211 223333445578999999988864322111 1111223333333 34578999997654332 22
Q ss_pred HHHHHHHHHhhcCCccEEEEcc--Cccc-----cCCCCCC---CCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHH
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHS--RKAL-----LNGISPA---ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 222 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~--r~~~-----~~g~~~~---~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da 222 (376)
+ ++.+.++|+|.|.|++ ++.. ..+..+. ..........+.+.++.+...++|||+.|||+++.|+
T Consensus 175 ~-----a~~~~~aGvd~i~vsn~gg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~al~~~~~~~~~i~Ii~dGGIr~g~Dv 249 (310)
T d1vcfa1 175 A-----ALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTDG 249 (310)
T ss_dssp H-----HHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEEESSCCSHHHH
T ss_pred H-----HHHHHHcCCCEEEeccccccchhhcccccccCchhhhhhhhcchHHHHHHHHHHhhcCCCeEEeCCCCCchHHH
Confidence 2 2234579999999954 3211 0010000 0001111123455555555568999999999999999
Q ss_pred HHHHHcCcCeeEEchHHhh
Q 017176 223 NAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 223 ~~~l~~Gad~VmiGRa~l~ 241 (376)
.++|..|||+|||||+++.
T Consensus 250 ~KALalGAdaV~iGr~~l~ 268 (310)
T d1vcfa1 250 AKALALGADLLAVARPLLR 268 (310)
T ss_dssp HHHHHHTCSEEEECGGGHH
T ss_pred HHHHHhCCCEeeEhHHHHH
Confidence 9999999999999998763
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=99.16 E-value=1.5e-10 Score=108.91 Aligned_cols=200 Identities=16% Similarity=0.145 Sum_probs=123.8
Q ss_pred CeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHHHH
Q 017176 4 RQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKAT 83 (376)
Q Consensus 4 ~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~aa 83 (376)
.+.++-||+.|||.++++..+.....++||.|.+-. ....+.. .+....+.....++.+.+ |.+++.+.. +
T Consensus 33 ~l~~~iPIIaa~MdtV~~~~mA~als~~GGlGvi~r-~~~~e~~------~~~i~~vk~~~~~v~~~v-gv~~~~~e~-~ 103 (330)
T d1vrda1 33 QIRINIPLVSAAMDTVTEAALAKALAREGGIGIIHK-NLTPDEQ------ARQVSIVKKTRLLVGAAV-GTSPETMER-V 103 (330)
T ss_dssp SCEESSSEEECCCTTTCSHHHHHHHHTTTCEEEECS-SSCHHHH------HHHHHHHHTCCBCCEEEE-CSSTTHHHH-H
T ss_pred CcccCCCEEeCCCCCcCCHHHHHHHHHCCCeEEeec-ccchhhh------HHHHHHHhhhccEEEEEE-ecCHHHHHH-H
Confidence 567888999999999999999999888898766522 2221111 111111222333455554 444555544 4
Q ss_pred HHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHh
Q 017176 84 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVS 162 (376)
Q Consensus 84 ~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~ 162 (376)
+.+.++|.|.|-|..+. | +++.+.+.++.+++.. ++|+.+.-- .+.+ .+ +.+
T Consensus 104 ~~li~agvd~ivId~A~-----------G-----~~~~~~~~ik~ik~~~~~~~viaGnV------~t~~-~a----~~l 156 (330)
T d1vrda1 104 EKLVKAGVDVIVIDTAH-----------G-----HSRRVIETLEMIKADYPDLPVVAGNV------ATPE-GT----EAL 156 (330)
T ss_dssp HHHHHTTCSEEEECCSC-----------C-----SSHHHHHHHHHHHHHCTTSCEEEEEE------CSHH-HH----HHH
T ss_pred HHHHHCCCCEEEEecCC-----------C-----CchhHHHHHHHHHHhCCCCCEEeech------hHHH-HH----HHH
Confidence 44556799987774221 1 2455667778777654 677776421 1222 11 223
Q ss_pred hcCCccEEEEccCc------cccCCCCCCCCCCCCccc-HHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEE
Q 017176 163 SLSPTRHFIIHSRK------ALLNGISPAENRTIPPLK-YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 235 (376)
Q Consensus 163 e~~Gvd~I~vh~r~------~~~~g~~~~~~~~~~~~~-~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vmi 235 (376)
.++|+|.|.|-.+. +...|.. .+.+. ...+.+.++. .++|||+.|||.+..|+.++|..|||+||+
T Consensus 157 ~~~GaD~v~VGig~Gs~ctt~~~~G~g------~p~~sai~~~~~~~~~-~~vpvIAdGGi~~~gdiakAla~GAd~Vm~ 229 (330)
T d1vrda1 157 IKAGADAVKVGVGPGSICTTRVVAGVG------VPQLTAVMECSEVARK-YDVPIIADGGIRYSGDIVKALAAGAESVMV 229 (330)
T ss_dssp HHTTCSEEEECSSCSTTCHHHHHHCCC------CCHHHHHHHHHHHHHT-TTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHcCCCEEeeccccCccccccceeccc------cccchhHHHHHHHHHh-cCceEEecCCcccCCchheeeeccCceeee
Confidence 46999999984221 1112221 11111 1223444444 389999999999999999999999999999
Q ss_pred chHHhhCCchh
Q 017176 236 GRAAYQNPWYT 246 (376)
Q Consensus 236 GRa~l~~P~lf 246 (376)
|+-|.+...-.
T Consensus 230 Gs~fa~~~E~p 240 (330)
T d1vrda1 230 GSIFAGTEEAP 240 (330)
T ss_dssp SHHHHTBTTSS
T ss_pred cchheeecccC
Confidence 99999876543
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.14 E-value=6.6e-11 Score=113.27 Aligned_cols=206 Identities=16% Similarity=0.101 Sum_probs=123.1
Q ss_pred CCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhc----c--CCCCCCEEEEecCCCH
Q 017176 3 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA----F--SPEQHPIVLQIGGSNL 76 (376)
Q Consensus 3 ~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~----~--~~~~~p~~vQL~g~~~ 76 (376)
+.+.++-||+.|||.++++..+.....++||.|.+-- +.+.+.......+...+.. . ......+.+-+ |..+
T Consensus 41 ~~~~l~iPIIsApMdtVt~~~mA~als~~GGLGvLhr-~~~~e~~~~ev~~v~~~~~~p~~~~~~~~~l~v~aav-g~~~ 118 (378)
T d1jr1a1 41 KKITLKTPLVSSPMDTVTEAGMAIAMALTGGIGFIHH-NCTPEFQANEVRKVKKYEQYPLASKDAKKQLLCGAAI-GTHE 118 (378)
T ss_dssp SSCEESSCEEECCCTTTCSHHHHHHHHHHTCEEEECC-SSCHHHHHHHHHHHHTSCCCTTCCBCTTSCBCCEEEE-CSST
T ss_pred CCccCCCCEEECCCCCcCCHHHHHHHHHCCCeeEEcC-CCCHHHHHHHHheehhhhhCcccccccccCEEEEEEe-ccCH
Confidence 5567888999999999999999999899998876632 2222211111111111100 0 00111233333 3333
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHH
Q 017176 77 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLC 155 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~ 155 (376)
++.. .+..+.++|.|.|.+....+. ...+.+.++.+++.. +.|+.+- ++ .+.+..
T Consensus 119 ~~~~-~~~~l~~agv~vi~id~a~g~----------------~~~~~~~i~~ik~~~~~~~iIaG---nV---aT~e~a- 174 (378)
T d1jr1a1 119 DDKY-RLDLLALAGVDVVVLDSSQGN----------------SIFQINMIKYMKEKYPNLQVIGG---NV---VTAAQA- 174 (378)
T ss_dssp HHHH-HHHHHHHHTCCEEEECCSSCC----------------SHHHHHHHHHHHHHSTTCEEEEE---EE---CSHHHH-
T ss_pred HHHH-HHHHHHhhccceEeeeccCcc----------------chhhHHHHHHHHHHCCCCceeec---cc---ccHHHH-
Confidence 4333 345566679999988754332 244566677777654 5666552 11 223222
Q ss_pred HHHHHHhhcCCccEEEEccCcc------ccCCCCCCCCCCCCccc-HHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHc
Q 017176 156 DFIYKVSSLSPTRHFIIHSRKA------LLNGISPAENRTIPPLK-YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK 228 (376)
Q Consensus 156 ~~i~~~~e~~Gvd~I~vh~r~~------~~~g~~~~~~~~~~~~~-~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~ 228 (376)
+.+.++|+|.|.|-.+.. ...|.. .|.+. ...+.+..+.. ++|||+.|||.+..|+.++|..
T Consensus 175 ----~~L~~aGAD~VkVGiG~Gs~ctTr~~tGvG------~pq~sai~~~~~~a~~~-~vpIIADGGi~~~gdiakAla~ 243 (378)
T d1jr1a1 175 ----KNLIDAGVDALRVGMGCGSICITQEVLACG------RPQATAVYKVSEYARRF-GVPVIADGGIQNVGHIAKALAL 243 (378)
T ss_dssp ----HHHHHHTCSEEEECSSCSTTBCHHHHHCCC------CCHHHHHHHHHHHHGGG-TCCEEEESCCCSHHHHHHHHHT
T ss_pred ----HHHHHhCCCEEeeccccccccccccccccC------cccchhhhHHHHhhccc-CCceecccccccCCceeeEEEe
Confidence 223468999999965432 111211 11211 11233444443 8999999999999999999999
Q ss_pred CcCeeEEchHHhhCCch
Q 017176 229 GAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 229 Gad~VmiGRa~l~~P~l 245 (376)
|||+||||+.|.+...-
T Consensus 244 GAd~VMmGs~fAgt~Es 260 (378)
T d1jr1a1 244 GASTVMMGSLLAATTEA 260 (378)
T ss_dssp TCSEEEESTTTTTBTTS
T ss_pred ecceeeecceeeeeecc
Confidence 99999999999876543
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=99.14 E-value=4.6e-10 Score=98.98 Aligned_cols=164 Identities=15% Similarity=0.121 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecC-----------CCCCccccCCC--CccccccCCHHHHHHHHHHHhcccCccEEEEe
Q 017176 75 NLDNLAKATELANAYNYDEINLNC-----------GCPSPKVAGHG--CFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 141 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~-----------gcP~~~v~r~g--~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 141 (376)
+++.+.+.|+.+...|+.+|.++. .+|.....+.. .+...+....+...+.+++- .+. +.+-.
T Consensus 21 ~~~~~a~~A~aa~~~Ga~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag---ad~-v~~~~ 96 (222)
T d1y0ea_ 21 SSFIMSKMALAAYEGGAVGIRANTKEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIESQ---CEV-IALDA 96 (222)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESHHHHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHHHHHHHHHT---CSE-EEEEC
T ss_pred CcHHHHHHHHHHHHCCCeEEecCCHHHHHHHHHhcCCccceeeccCCcchHHhhcccHHHHHhHHHcC---CCE-EEeec
Confidence 567788888888888999998864 33432211111 11223334445555444431 111 12211
Q ss_pred cCCCCCCccHHHHHHHH------------------HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHh
Q 017176 142 RIGVDDHDSYNQLCDFI------------------YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLR 203 (376)
Q Consensus 142 R~g~~~~~~~~~~~~~i------------------~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~ 203 (376)
...........+..+.+ +..+.+.|+|+|.++.+...... .........++.+.++++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~t~~~a~~~~~~g~d~i~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~ 172 (222)
T d1y0ea_ 97 TLQQRPKETLDELVSYIRTHAPNVEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYT----QGQLLYQNDFQFLKDVLQ 172 (222)
T ss_dssp SCSCCSSSCHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTCSEEECTTTTSSTTS----TTCCTTHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHhCCceEEeecCCCHHHHHHHHHcCCCeEEEeccCCcccc----cCccchhhHHHHHHHHHh
Confidence 11111111111111110 12345789999887544321111 011122334677888877
Q ss_pred hCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchhhH
Q 017176 204 DFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLG 248 (376)
Q Consensus 204 ~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~ 248 (376)
.. ++|||++|||.|++|+.++++.|||+||+||++ .+|+.+.+
T Consensus 173 ~~-~iPVia~GGI~t~~d~~~~~~~GAdgV~iGsAi-~rp~~~~~ 215 (222)
T d1y0ea_ 173 SV-DAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAI-TRPKEITK 215 (222)
T ss_dssp HC-CSEEEEESSCCSHHHHHHHHHTTCSEEEECHHH-HCHHHHHH
T ss_pred cC-CCcEEEeCCCCCHHHHHHHHHcCCCEEEEchhh-cCHHHHHH
Confidence 65 999999999999999999999999999999965 58887544
|
| >d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Glycolate oxidase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=99.11 E-value=1.8e-09 Score=102.63 Aligned_cols=209 Identities=14% Similarity=0.124 Sum_probs=128.8
Q ss_pred CeecCCcEEEccCCCCC------hHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCC-CH
Q 017176 4 RQYLPPWFSVAPMMDWT------DNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGS-NL 76 (376)
Q Consensus 4 ~~~l~nri~lAPM~~~t------d~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~-~~ 76 (376)
|.+++.||+++||++.+ +......+.+.| ..+...-+.. . ....... ..+.+...|++.. +.
T Consensus 66 G~~~~~P~~IspMtgg~~~~~~~e~~lA~aA~~~g-i~~~~~s~s~-~-------s~~~~~~--~~~~~~~~~~~~~~~~ 134 (359)
T d1goxa_ 66 GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAG-TIMTLSSWAT-S-------SVEEVAS--TGPGIRFFQLYVYKDR 134 (359)
T ss_dssp TEEESSSEEECCCSCGGGTCTTHHHHHHHHHHHTT-CCEEECTTCS-S-------CHHHHHT--TCCCCEEEEECCBSSH
T ss_pred CcccCCceeeccccccccCCCchHHHhhhhHHhhC-Cccccccccc-c-------cchhhHH--hcCCCcccccccchhH
Confidence 56889999999999742 234445556665 5554322221 1 1111111 1346789999875 45
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCcccc----CCC---------------Cccccc-------------cCCHHHHHH
Q 017176 77 DNLAKATELANAYNYDEINLNCGCPSPKVA----GHG---------------CFGVSL-------------MLDPKFVGE 124 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~----r~g---------------~yG~~l-------------~~~~~~~~e 124 (376)
........++..+|++.+-++...|..... +.+ ..+..- +-++....+
T Consensus 135 ~~~~~l~~~~~~a~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (359)
T d1goxa_ 135 NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWK 214 (359)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHTTCCCCTTCCCGGGSSSCCC---------HHHHHHHTBCTTCCHH
T ss_pred HHHHHHHHHHHHhhcccccccccchhhhhhhhhccccccCCcccchhhhhhhccccCcccccccHHHHHHhhcCCCCCHH
Confidence 566667788899999999988876532110 000 000000 001112233
Q ss_pred HHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEE--ccCccccCCCCCCCCCCCCcccHHHHHHHH
Q 017176 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII--HSRKALLNGISPAENRTIPPLKYEYYYALL 202 (376)
Q Consensus 125 iv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~v--h~r~~~~~g~~~~~~~~~~~~~~~~v~~~~ 202 (376)
.++.+++.++.|+.+|--.+++ +. ..+.+.|++.+.+ |++.....+. ...+.+.+++
T Consensus 215 ~v~~l~~~~~~~~~~kg~~~~~------da-----~~a~~~g~~~~~vsnhggr~ld~~~----------~~~~~l~~i~ 273 (359)
T d1goxa_ 215 DVAWLQTITSLPILVKGVITAE------DA-----RLAVQHGAAGIIVSNHGARQLDYVP----------ATIMALEEVV 273 (359)
T ss_dssp HHHHHHHHCCSCEEEECCCSHH------HH-----HHHHHTTCSEEEECCGGGTSSTTCC----------CHHHHHHHHH
T ss_pred HHHHHHhhcccceeeecccchH------HH-----HHHHHccccceeccccccccccccc----------chhhhchhhh
Confidence 4677777778899998443322 22 1234799999998 4544332221 1255555665
Q ss_pred hhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017176 203 RDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 203 ~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
+... ++|||+.|||+++-|+.++|..|||+|++||++|.-+.
T Consensus 274 ~~~~~~~~iiadGGIR~G~Di~KALaLGAd~vgigrp~L~~la 316 (359)
T d1goxa_ 274 KAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLA 316 (359)
T ss_dssp HHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHH
T ss_pred hccCCccceeeccCcCcHHHHHHHHHcCCCEEEEcHHHHHHHH
Confidence 5543 69999999999999999999999999999999986444
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=99.09 E-value=5.9e-10 Score=107.07 Aligned_cols=204 Identities=13% Similarity=0.120 Sum_probs=121.3
Q ss_pred CCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchh-------------------hhhh-----
Q 017176 3 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNL-------------------DRFL----- 58 (376)
Q Consensus 3 ~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~-------------------~~~~----- 58 (376)
+++.++-||+-|||.++|+..+.....+.||.|.+--.| +.+.....-++. ..++
T Consensus 35 ~~~~l~iPIisA~MDtVt~~~mAi~ma~~GGlgVihr~~-~ie~q~~~v~~Vk~~~~~~~~~~~~d~~~~~~~~~t~~~~ 113 (388)
T d1eepa_ 35 KNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHKNM-SIEAQRKEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQH 113 (388)
T ss_dssp SSCEESSSEEECCCTTTCSHHHHHHHHHHTSEEEECSSS-CHHHHHHHHHHHHTCC------------------------
T ss_pred CCEecCCCEEecCCCCCCCHHHHHHHHHCCCEEEEeCCC-CHHHHHHHHHHhhhccccccccccCccccccchhhhhhhh
Confidence 567888999999999999999999888889888774221 111000000000 0000
Q ss_pred --------c----------cCCCCC--CEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCC
Q 017176 59 --------A----------FSPEQH--PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLD 118 (376)
Q Consensus 59 --------~----------~~~~~~--p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~ 118 (376)
. ..+... .+++-+ |..++.. +-+..+.++|+|.|-|... ++ .
T Consensus 114 ~~~~~a~~d~~~~~~~p~~~~d~~~~l~vgaAv-g~~~~~~-~ra~~L~~aG~D~ivID~A--------hG--------~ 175 (388)
T d1eepa_ 114 LEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAV-SIDIDTI-ERVEELVKAHVDILVIDSA--------HG--------H 175 (388)
T ss_dssp --------------CCTTCCBCTTSCBCCEEEE-CSCTTHH-HHHHHHHHTTCSEEEECCS--------CC--------S
T ss_pred hhhhHHHHhHHHHhhhhHHHhhhhccchhhhcc-CCCHHHH-HHHHHHHhhccceeeeecc--------cc--------c
Confidence 0 000000 122222 2223333 3345566789999977531 12 2
Q ss_pred HHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCc------cccCCCCCCCCCCCC
Q 017176 119 PKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK------ALLNGISPAENRTIP 191 (376)
Q Consensus 119 ~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~------~~~~g~~~~~~~~~~ 191 (376)
.+.+.+.++.+++.. ++||.+. ++ .+.+... .+.++|+|.|.|--+. +...|.+- |
T Consensus 176 s~~~~~~i~~ik~~~~~v~vIaG---NV---~T~e~a~-----~L~~~GaD~VkVGiGpGs~CtTr~~~GvG~------p 238 (388)
T d1eepa_ 176 STRIIELIKKIKTKYPNLDLIAG---NI---VTKEAAL-----DLISVGADCLKVGIGPGSICTTRIVAGVGV------P 238 (388)
T ss_dssp SHHHHHHHHHHHHHCTTCEEEEE---EE---CSHHHHH-----HHHTTTCSEEEECSSCSTTSHHHHHHCCCC------C
T ss_pred hHHHHHHHHHHHHHCCCCceeec---cc---cCHHHHH-----HHHhcCCCeeeeccccccccccccccccCc------c
Confidence 356678888888654 6787663 22 2333222 2336999999985332 22223321 2
Q ss_pred cccHHHHHHHHhh--CCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017176 192 PLKYEYYYALLRD--FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 192 ~~~~~~v~~~~~~--~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
. +..+.+..+. ...+|||+.|||.+.-|+.++|..|||+||+|+.|-+.-.
T Consensus 239 q--~sai~~~~~~~~~~~vpiIADGGi~~~Gdi~KAla~GAd~VMlG~~lAg~~E 291 (388)
T d1eepa_ 239 Q--ITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKE 291 (388)
T ss_dssp H--HHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEECHHHHTBTT
T ss_pred h--HHHHHHHHHHhccCCceEEeccccCcCCceeeeEEeccceeecchhhhcccC
Confidence 2 3444333222 2379999999999999999999999999999999987654
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.07 E-value=8.3e-10 Score=98.00 Aligned_cols=77 Identities=13% Similarity=0.039 Sum_probs=54.3
Q ss_pred HHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHH
Q 017176 160 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~ 239 (376)
+.++++|+|+|.++++.....+.. ..+..+. +.+..+. .++|||++|||+|++|+.++++.|||+||||+++
T Consensus 144 ~~a~~~Gad~i~~~~~~~~~~~~~------~~~~~~~-~~~~~~~-~~ipvia~GGI~t~~d~~~al~~GAd~V~vGsAi 215 (230)
T d1yxya1 144 LVAHQAGIDFVGTTLSGYTPYSRQ------EAGPDVA-LIEALCK-AGIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAI 215 (230)
T ss_dssp HHHHHTTCSEEECTTTTSSTTSCC------SSSCCHH-HHHHHHH-TTCCEEEESCCCSHHHHHHHHTTCCSEEEECHHH
T ss_pred HHHHhcCCCEEEeecccccccccc------cchHHHH-HHHHHhc-CCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChhh
Confidence 345679999999988754221111 1111122 3334444 4899999999999999999999999999999986
Q ss_pred hhCCch
Q 017176 240 YQNPWY 245 (376)
Q Consensus 240 l~~P~l 245 (376)
. +|.-
T Consensus 216 ~-~p~~ 220 (230)
T d1yxya1 216 T-RPKE 220 (230)
T ss_dssp H-CHHH
T ss_pred c-CHHH
Confidence 4 6664
|
| >d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Membrane-associated (S)-mandelate dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.07 E-value=1.1e-09 Score=103.82 Aligned_cols=206 Identities=13% Similarity=0.064 Sum_probs=127.1
Q ss_pred CCeecCCcEEEccCCCCC------hHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCH
Q 017176 3 ARQYLPPWFSVAPMMDWT------DNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNL 76 (376)
Q Consensus 3 ~~~~l~nri~lAPM~~~t------d~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~ 76 (376)
-|.++..||+++||++.+ +......+.++| ..+....+-+ .. .....+. .......|....++
T Consensus 64 lGk~ls~Pi~Iapmtgg~~~~~~~n~~lA~aA~~~~-i~~~~gs~s~-~~-------~~e~~~~--~~~~~~~~~~~~~~ 132 (353)
T d1p4ca_ 64 LGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAG-IPFVLSTASN-MS-------IEDLARQ--CDGDLWFQLYVIHR 132 (353)
T ss_dssp TTEEESSSEEECCCSCGGGTSTTHHHHHHHHHHHHT-CCEEECTTCS-SC-------HHHHHHH--CCSCEEEEECCSSH
T ss_pred CCcCccCceeeccccccccccchhhHHHHHHHHHhh-cccccccccc-cc-------chhHHHh--cCCceeeeeccccH
Confidence 367889999999999754 344555667776 5554332211 10 1111111 23456677777777
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCccc---------------------------cCCCC--ccc---cccCCHHHHHH
Q 017176 77 DNLAKATELANAYNYDEINLNCGCPSPKV---------------------------AGHGC--FGV---SLMLDPKFVGE 124 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~~v---------------------------~r~g~--yG~---~l~~~~~~~~e 124 (376)
.......+.++.+|++.+.++..-|..-. ..... ... .-+-++....+
T Consensus 133 ~~~~~l~~~~~~~g~~~l~~~vd~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (353)
T d1p4ca_ 133 EIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKNFEGIDLGKMDKANLEMQAALMSRQMDASFNWE 212 (353)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHHTCCCCTTCCCGGGTTCCCSCCSSTTTTTHHHHTSSCCCTTCCHH
T ss_pred HHHHHhHHHHHHcCCcceeeeccccccCcchhhhhhhhcccchhhhhhhhhhccccccccccchhHHHHHhccCCCCCHH
Confidence 77777778888999999998776542100 00000 000 00112234556
Q ss_pred HHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEc--cCccccCCCCCCCCCCCCcccHHHHHHHH
Q 017176 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLKYEYYYALL 202 (376)
Q Consensus 125 iv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh--~r~~~~~g~~~~~~~~~~~~~~~~v~~~~ 202 (376)
-++.+++.++.|+.+|--.++. +. ..+.+.|++.+.+. ++....... ...+.+.++.
T Consensus 213 ~i~~l~~~~~~~i~~kgv~~~~------~~-----~~a~~~g~~~~~~s~~gg~~~~~~~----------~~~~~l~~i~ 271 (353)
T d1p4ca_ 213 ALRWLRDLWPHKLLVKGLLSAE------DA-----DRCIAEGADGVILSNHGGRQLDCAI----------SPMEVLAQSV 271 (353)
T ss_dssp HHHHHHHHCCSEEEEEEECCHH------HH-----HHHHHTTCSEEEECCGGGTSCTTCC----------CGGGTHHHHH
T ss_pred HHHHHHhccccchhhhcchhhh------hH-----HHHHhcCCchhhhcccccccccccc----------cchhcccchh
Confidence 6777777788899988544332 21 12346899998884 333222111 1134444554
Q ss_pred hhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017176 203 RDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 203 ~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
.. .++|||+.|||+++-|+.++|..|||+|++||.+|.
T Consensus 272 ~~-~~~~viasGGIR~G~Dv~KALaLGAd~vgigrp~L~ 309 (353)
T d1p4ca_ 272 AK-TGKPVLIDSGFRRGSDIVKALALGAEAVLLGRATLY 309 (353)
T ss_dssp HH-HCSCEEECSSCCSHHHHHHHHHTTCSCEEESHHHHH
T ss_pred cc-cccceeecCCcCchHHHHHHHHcCCCEEEEcHHHHH
Confidence 43 379999999999999999999999999999999874
|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.04 E-value=3.3e-09 Score=102.81 Aligned_cols=212 Identities=12% Similarity=0.093 Sum_probs=122.5
Q ss_pred CCeecCCcEEEccCCCCC-------hHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccC-CCCCCEEEEecCC
Q 017176 3 ARQYLPPWFSVAPMMDWT-------DNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFS-PEQHPIVLQIGGS 74 (376)
Q Consensus 3 ~~~~l~nri~lAPM~~~t-------d~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~-~~~~p~~vQL~g~ 74 (376)
-|.+++.||+++||++.. +..... .+..++.+..+ ..... ............ ....+...|++..
T Consensus 87 lG~~l~~P~~Isp~g~~~~~~~~~~~~~~A~-a~aa~~~~~~~---~ls~~---~~~~~~~~~~~a~~~~~~~~~q~y~~ 159 (414)
T d1kbia1 87 LGSHVDVPFYVSATALCKLGNPLEGEKDVAR-GCGQGVTKVPQ---MISTL---ASCSPEEIIEAAPSDKQIQWYQLYVN 159 (414)
T ss_dssp TTEEESSSEEECCCSCGGGTCTTTTHHHHHH-HHHSSSSCCCE---EECTT---CSSCHHHHHHTCCCSSCCEEEEECCC
T ss_pred CCccCCCCEEEChhhhhcccCcchhHHHHHh-hHHHhhhcccc---ccccc---cccchHHHHHHhcCCccchhhccccc
Confidence 467899999999996521 222222 23332223221 11110 011112222222 2345678899865
Q ss_pred -CHHHHHHHHHHHHHCCCCEEEecCCCCCcc------------------------ccCCCCccccc--cCCHHHHHHHHH
Q 017176 75 -NLDNLAKATELANAYNYDEINLNCGCPSPK------------------------VAGHGCFGVSL--MLDPKFVGEAMS 127 (376)
Q Consensus 75 -~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~------------------------v~r~g~yG~~l--~~~~~~~~eiv~ 127 (376)
+........++++.+|++.+-++...|..- .......+..+ .-++.+..+.++
T Consensus 160 ~~~~~~~~l~~ra~~ag~~al~~tvD~~~~g~re~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~i~ 239 (414)
T d1kbia1 160 SDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKFIDPSLTWKDIE 239 (414)
T ss_dssp SSHHHHHHHHHHHHHHTCSCEEEECSCSSCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGCBTTBCTTCCHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCcccccccccccccccHHHHHhcccccccchhhhhcccccccccHHHHHHHhcccCCCHHHHH
Confidence 566666777889999999998887766421 00000001111 112234446778
Q ss_pred HHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEc--cCccccCCCCCCCCCCCCcccHHHHHHH---H
Q 017176 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLKYEYYYAL---L 202 (376)
Q Consensus 128 ~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh--~r~~~~~g~~~~~~~~~~~~~~~~v~~~---~ 202 (376)
.++..++.|+.+|--.. .++.. .+.+.|++.+.++ ++.+.... +. ....+.++ +
T Consensus 240 ~i~~~~~~~~i~kgi~~------~~da~-----~~~~~G~~~i~vsnhggr~~d~~---------~~-~~~~l~~i~~~~ 298 (414)
T d1kbia1 240 ELKKKTKLPIVIKGVQR------TEDVI-----KAAEIGVSGVVLSNHGGRQLDFS---------RA-PIEVLAETMPIL 298 (414)
T ss_dssp HHHHHCSSCEEEEEECS------HHHHH-----HHHHTTCSEEEECCTTTTSSTTC---------CC-HHHHHHHHHHHH
T ss_pred HHhccCCceEEeeccch------hHHHH-----HHHhcCCcceeeccccccccccc---------cc-cccchhhhhhhh
Confidence 88888889999994432 22222 2346999999995 44332111 11 12222222 2
Q ss_pred h--h-CCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 203 R--D-FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 203 ~--~-~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
. . ..++|||+.|||+++-|+.++|..|||+|+|||.+|.-
T Consensus 299 ~~~~v~~~~~viadGGIR~G~DVaKALALGAdaVgigrp~L~~ 341 (414)
T d1kbia1 299 EQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYA 341 (414)
T ss_dssp HTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHH
T ss_pred hhhccCCceeEEecCCcCcHHHHHHHHHcCCCEEEEcHHHHHH
Confidence 2 1 24699999999999999999999999999999998754
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.92 E-value=9.1e-09 Score=97.60 Aligned_cols=199 Identities=17% Similarity=0.152 Sum_probs=120.0
Q ss_pred CeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHHHH
Q 017176 4 RQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKAT 83 (376)
Q Consensus 4 ~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~aa 83 (376)
.+.+.-||+.|||-++++..+.....++||.|.+--.+...+ ... ......+ ......+++-+ |.+++.+.++.
T Consensus 40 ~~~~~iPIIsA~MDtV~~~~mA~~ls~~Gglgvlhr~~~~~e-~~~---~~~~~~~-~~~~~~v~aav-Gv~~~~~er~~ 113 (365)
T d1zfja1 40 NLTLNIPIITAAMDTVTGSKMAIAIARAGGLGVIHKNMSITE-QAE---EVRKVKR-SEGRLLVAAAV-GVTSDTFERAE 113 (365)
T ss_dssp TEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECCSSCHHH-HHH---HHHHHHH-HTSCBCCEEEE-CSSTTHHHHHH
T ss_pred CcccCCCEEECCCCCcCCHHHHHHHHHCCCceEEcCccCHHH-HHH---Hhhhhhh-ccCceEEEEEe-ccCchHHHHHH
Confidence 467888999999999999999998888998776532211111 000 0000000 11112233333 44455555544
Q ss_pred HHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHh
Q 017176 84 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVS 162 (376)
Q Consensus 84 ~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~ 162 (376)
. +.++|+|.|-|... + | ....+.+.++.+++.. +.|+.+- ++. +.+... -+
T Consensus 114 ~-l~~agvd~ivID~A--------~---G-----~s~~~~~~i~~ik~~~~~~~iIaG---NV~---T~e~a~-----~L 165 (365)
T d1zfja1 114 A-LFEAGADAIVIDTA--------H---G-----HSAGVLRKIAEIRAHFPNRTLIAG---NIA---TAEGAR-----AL 165 (365)
T ss_dssp H-HHHHTCSEEEECCS--------C---T-----TCHHHHHHHHHHHHHCSSSCEEEE---EEC---SHHHHH-----HH
T ss_pred H-HHHcCCCEEEEECC--------c---c-----cccchhHHHHHHHhhCCCcceeec---ccc---cHHHHH-----HH
Confidence 4 45679999866421 1 1 2345666777777654 5666552 222 232221 12
Q ss_pred hcCCccEEEEccCc------cccCCCCCCCCCCCCcccHHHHH---HHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCee
Q 017176 163 SLSPTRHFIIHSRK------ALLNGISPAENRTIPPLKYEYYY---ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV 233 (376)
Q Consensus 163 e~~Gvd~I~vh~r~------~~~~g~~~~~~~~~~~~~~~~v~---~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~V 233 (376)
.++|+|.|.|--+. +...|.. +|. +..+. +.++.. ++|||+.|||.+.-|+.++|..|||+|
T Consensus 166 ~~aGaD~VkVGiG~Gs~CTTr~~tGvG------vPq--~sai~~~~~~~~~~-~~~iIADGGi~~~GDi~KAla~GAd~V 236 (365)
T d1zfja1 166 YDAGVDVVKVGIGPGSICTTRVVAGVG------VPQ--VTAIYDAAAVAREY-GKTIIADGGIKYSGDIVKALAAGGNAV 236 (365)
T ss_dssp HHTTCSEEEECSSCCTTBCHHHHTCCC------CCH--HHHHHHHHHHHHHT-TCEEEEESCCCSHHHHHHHHHTTCSEE
T ss_pred HhcCCceEEeeecccccccCcceeeee------ccc--hhHHHHHHHHHHhC-CceEEecCCcCcchhhhhhhhccCCEE
Confidence 36999999986332 1222322 122 33333 334444 799999999999999999999999999
Q ss_pred EEchHHhhCCch
Q 017176 234 MVGRAAYQNPWY 245 (376)
Q Consensus 234 miGRa~l~~P~l 245 (376)
|+|.-|-+...-
T Consensus 237 MlG~~lAg~~Es 248 (365)
T d1zfja1 237 MLGSMFAGTDEA 248 (365)
T ss_dssp EESTTTTTBSSC
T ss_pred EecchhccccCC
Confidence 999998877654
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=98.85 E-value=1.5e-08 Score=96.14 Aligned_cols=195 Identities=13% Similarity=0.045 Sum_probs=113.7
Q ss_pred CeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHHHH
Q 017176 4 RQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKAT 83 (376)
Q Consensus 4 ~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~aa 83 (376)
++.++-||+-|||-++++..+.....+.||.+.+ .-+...+. ..............+.....-.+.. +-+
T Consensus 46 ~i~l~iPIIsAnMDTVt~~~mA~~la~~Gglgvi-hR~~~ie~------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 115 (362)
T d1pvna1 46 EINLKIPLVSAIMQSVSGEKMAIALAREGGISFI-FGSQSIES------QAAMVHAVKNFRYLVGAGINTRDFR---ERV 115 (362)
T ss_dssp SCEESSSEEECSCTTTCSHHHHHHHHHTTCEEEE-CCSSCHHH------HHHHHHHHHTCCCCCEEEECSSSHH---HHH
T ss_pred ccccCCcEEecCCCCcCCHHHHHHHHHCCCEEEE-eecCCHHH------HHHHhhhhhhcccccccccchhhhH---HHH
Confidence 5567779999999999999998888888877655 22211111 1111111111222223322222322 233
Q ss_pred HHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHHHHHHHHHHH
Q 017176 84 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKV 161 (376)
Q Consensus 84 ~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~~~~~~i~~~ 161 (376)
+.+.++|+|.|-|... ++ |. +.+.+.++.+++.. ..||.+. ++ .+.+. .+ .
T Consensus 116 ~~L~~ag~d~i~IDvA--------hG-~~-------~~v~~~i~~ir~~~~~~~~IiAG---NV---aT~e~-~~---~- 168 (362)
T d1pvna1 116 PALVEAGADVLCIDSS--------DG-FS-------EWQKITIGWIREKYGDKVKVGAG---NI---VDGEG-FR---Y- 168 (362)
T ss_dssp HHHHHHTCSEEEECCS--------CC-CB-------HHHHHHHHHHHHHHGGGSCEEEE---EE---CSHHH-HH---H-
T ss_pred HHHhhcCceEEeechh--------cc-ch-------hHHHHHHHHHHHhhccceeeecc---cc---cCHHH-HH---H-
Confidence 4456678898877531 12 22 44566677775533 4667664 12 22322 21 1
Q ss_pred hhcCCccEEEEccC------ccccCCCCCCCCCCCCcccHHHHHHHH---hh-----CCCCeEEEecCCCCHHHHHHHHH
Q 017176 162 SSLSPTRHFIIHSR------KALLNGISPAENRTIPPLKYEYYYALL---RD-----FPDLTFTLNGGINTVDEVNAALR 227 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r------~~~~~g~~~~~~~~~~~~~~~~v~~~~---~~-----~~~ipVi~nGgI~s~~da~~~l~ 227 (376)
+.++|+|.|-|--+ |+...|.+ +|. +..+.++. ++ -.++|||+.|||.++-|+.++|.
T Consensus 169 L~~aGaD~vkVGIG~Gs~CTTr~~tGvG------~Pq--~sAv~e~a~~~~~~~~~~~~~v~iiaDGGi~~~gdi~KAla 240 (362)
T d1pvna1 169 LADAGADFIKIGIGGGSICITREQKGIG------RGQ--ATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALA 240 (362)
T ss_dssp HHHHTCSEEEECSSCSTTBCHHHHTCBC------CCH--HHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHH
T ss_pred HHHhCCcEEEecccccccccchhhhccC------Cch--HHHHHHHHHHHHHhhhhcccCCceeeccccCcccceeEEEE
Confidence 23689999998422 22333432 122 34443332 11 13699999999999999999999
Q ss_pred cCcCeeEEchHHhhCC
Q 017176 228 KGAHHVMVGRAAYQNP 243 (376)
Q Consensus 228 ~Gad~VmiGRa~l~~P 243 (376)
.|||+||+|.-|-+.-
T Consensus 241 ~GAd~VM~G~~lAg~~ 256 (362)
T d1pvna1 241 MGADFIMLGRYFARFE 256 (362)
T ss_dssp TTCSEEEESHHHHTBT
T ss_pred Eeccceeehhhhhccc
Confidence 9999999999887553
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.73 E-value=2.6e-08 Score=94.68 Aligned_cols=198 Identities=14% Similarity=0.145 Sum_probs=116.8
Q ss_pred CeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhh---hh-ccCCCCCCEEEEecCCCHHHH
Q 017176 4 RQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDR---FL-AFSPEQHPIVLQIGGSNLDNL 79 (376)
Q Consensus 4 ~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~---~~-~~~~~~~p~~vQL~g~~~~~~ 79 (376)
++.+.-||+-|||-++++..+.....+.||.+.+- -....+........... +. ...+....+.+-. +..++++
T Consensus 41 ~~~l~iPIiss~MDtV~~~~mA~~la~~Gglgvlh-r~~~~e~~~~~v~~v~~~e~~~~~~~d~~~~~~v~~-~~~~~~~ 118 (368)
T d2cu0a1 41 NVKLNIPILSAAMDTVTEWEMAVAMAREGGLGVIH-RNMGIEEQVEQVKRVKRAEKYKNAVRDENGELLVAA-AVSPFDI 118 (368)
T ss_dssp TEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEEC-SSSCHHHHHHHHHHHHTCCCCTTCCBCTTSCBCCEE-EECTTCH
T ss_pred CcccCCCEEeCCCCCcCCHHHHHHHHHCCCeeEec-ccCCHHHHHHHHHhhhhhhhccccccccCccEEEEe-ccChHHH
Confidence 46777899999999999999998888888776552 22222211110000000 00 0111122222222 1234445
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHH
Q 017176 80 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 159 (376)
Q Consensus 80 ~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~ 159 (376)
.++. .+.++|.|.|-|... + | ..+.+.+.++.+++..+.|+.+. ++- +.+ .+
T Consensus 119 ~r~~-~l~~aGvd~ivID~A--------~---G-----h~~~~i~~lK~ir~~~~~~vIaG---NVa---T~e-~~---- 170 (368)
T d2cu0a1 119 KRAI-ELDKAGVDVIVVDTA--------H---A-----HNLKAIKSMKEMRQKVDADFIVG---NIA---NPK-AV---- 170 (368)
T ss_dssp HHHH-HHHHTTCSEEEEECS--------C---C-----CCHHHHHHHHHHHHTCCSEEEEE---EEC---CHH-HH----
T ss_pred HHHH-HHHHcCCCEEEecCc--------c---c-----chhhhhhhhhhhhhhcccceeec---ccc---CHH-HH----
Confidence 4433 456789999987632 1 1 12346677888888777777652 222 222 11
Q ss_pred HHhhcCCccEEEEc--cCc----cccCCCCCCCCCCCCcccHHHHHHHH---hhCCCCeEEEecCCCCHHHHHHHHHcCc
Q 017176 160 KVSSLSPTRHFIIH--SRK----ALLNGISPAENRTIPPLKYEYYYALL---RDFPDLTFTLNGGINTVDEVNAALRKGA 230 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh--~r~----~~~~g~~~~~~~~~~~~~~~~v~~~~---~~~~~ipVi~nGgI~s~~da~~~l~~Ga 230 (376)
+...|+|+|-|- ++. +...|.+. |. +..+.+.. +.. ++|||+.|||.+.-|+.++|..||
T Consensus 171 --~~l~gaD~VkVGIG~Gs~CTTr~~tGvG~------Pq--~sAi~e~~~~~~~~-~~~iiADGGi~~~Gdi~KAla~GA 239 (368)
T d2cu0a1 171 --DDLTFADAVKVGIGPGSICTTRIVAGVGV------PQ--ITAVAMVADRAQEY-GLYVIADGGIRYSGDIVKAIAAGA 239 (368)
T ss_dssp --TTCTTSSEEEECSSCSTTBCHHHHTCCCC------CH--HHHHHHHHHHHHHH-TCEEEEESCCCSHHHHHHHHHTTC
T ss_pred --HhhhcCcceeecccCcccccchhhccccc------ch--HHHHHHHHHHHhcc-CCeeEecCCCCcCChhheeeeecc
Confidence 234799999873 221 22233321 22 44444333 333 799999999999999999999999
Q ss_pred CeeEEchHHhhC
Q 017176 231 HHVMVGRAAYQN 242 (376)
Q Consensus 231 d~VmiGRa~l~~ 242 (376)
|+||+|..|-+.
T Consensus 240 d~VMlG~~lAg~ 251 (368)
T d2cu0a1 240 DAVMLGNLLAGT 251 (368)
T ss_dssp SEEEESTTTTTB
T ss_pred ceeeccchhccc
Confidence 999999987654
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Probab=98.50 E-value=1.1e-05 Score=70.37 Aligned_cols=203 Identities=15% Similarity=0.154 Sum_probs=123.6
Q ss_pred CCCeecCCcEEEccCCCCCh-HHHHHHHHHhCCCcEEEecceeecccccccchhhhhhcc-CCCCCCEEEEecC-CCHHH
Q 017176 2 VARQYLPPWFSVAPMMDWTD-NHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF-SPEQHPIVLQIGG-SNLDN 78 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td-~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~-~~~~~p~~vQL~g-~~~~~ 78 (376)
|++.+|++|+++-- +.+.+ ..+.....+.| +.++ |=.+.-..+ .......+++. .+.+..+..+=.| .+.++
T Consensus 5 I~g~~f~SRLilGT-gkY~s~~~~~~ai~aSg-aeiV-TVAlRR~~~--~~~~~~~~l~~i~~~~~~lLPNTAGc~tA~E 79 (251)
T d1xm3a_ 5 IGGKSFQSRLLLGT-GKYPSFDIQKEAVAVSE-SDIL-TFAVRRMNI--FEASQPNFLEQLDLSKYTLLPNTAGASTAEE 79 (251)
T ss_dssp ETTEEESCCEEEEC-SCSSCHHHHHHHHHHHT-CSEE-EEETTSSTT--C-------CTTCCGGGSEEEEECTTCSSHHH
T ss_pred ECCEEEEcceEEEc-CCCCCHHHHHHHHHHhC-CCEE-EEEEeeecC--cCCCCcchhhhccccceEEccchHHHhhHHH
Confidence 68999999999963 34544 44555556665 6554 222211111 11111233332 2344456677665 47889
Q ss_pred HHHHHHHHHHC-CCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHH
Q 017176 79 LAKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDF 157 (376)
Q Consensus 79 ~~~aa~~~~~~-G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~ 157 (376)
-+..|+++.++ |-++|-|- |..... .|+-|+....+-.+.+.+. ++.|..-+. +| . .
T Consensus 80 Avr~A~lARE~~~t~~IKLE-------Vi~D~~---~L~PD~~etl~Aae~Lv~e-GF~VlpY~~---~D---~-----v 137 (251)
T d1xm3a_ 80 AVRIARLAKASGLCDMIKVE-------VIGCSR---SLLPDPVETLKASEQLLEE-GFIVLPYTS---DD---V-----V 137 (251)
T ss_dssp HHHHHHHHHHTTCCSSEEEC-------CBCCTT---TCCBCHHHHHHHHHHHHHT-TCCEEEEEC---SC---H-----H
T ss_pred HHHHHHHHHHhcCCceEEEE-------EecCCC---CcCCCHHHHHHHHHHHHhC-CcEEEEecC---CC---H-----H
Confidence 99999999987 45777663 333222 3677776666555555432 555555433 22 1 1
Q ss_pred HHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEch
Q 017176 158 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGR 237 (376)
+++.+++.||..|---|--- =+|. ...+...+..++++ .++|||..+||-++.|+..+++.|||+|++.+
T Consensus 138 ~ak~Le~~Gc~avMPlgsPI-GSg~--------Gl~n~~~l~~i~~~-~~vPvIvDAGIG~pSdAa~AMElG~daVLvNT 207 (251)
T d1xm3a_ 138 LARKLEELGVHAIMPGASPI-GSGQ--------GILNPLNLSFIIEQ-AKVPVIVDAGIGSPKDAAYAMELGADGVLLNT 207 (251)
T ss_dssp HHHHHHHHTCSCBEECSSST-TCCC--------CCSCHHHHHHHHHH-CSSCBEEESCCCSHHHHHHHHHTTCSEEEESH
T ss_pred HHHHHHHcCChhHHHhhhhh-hcCC--------CcCChHHHHHHHhc-CCccEEEecCCCCHHHHHHHHHccCCEEEech
Confidence 35667889999876543211 0111 12235566677766 59999999999999999999999999999999
Q ss_pred HHhh
Q 017176 238 AAYQ 241 (376)
Q Consensus 238 a~l~ 241 (376)
+.-.
T Consensus 208 AIA~ 211 (251)
T d1xm3a_ 208 AVSG 211 (251)
T ss_dssp HHHT
T ss_pred hhhc
Confidence 8753
|
| >d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Azospirillum brasilense [TaxId: 192]
Probab=98.34 E-value=5.6e-06 Score=83.94 Aligned_cols=114 Identities=15% Similarity=0.178 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCC--cc
Q 017176 117 LDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP--PL 193 (376)
Q Consensus 117 ~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~--~~ 193 (376)
..++.+.+.|..+|+.. +.||.||+-.+. .+.+++..+ .++|+|.|+|.|... |++.+....+. -+
T Consensus 553 ~siedL~~~I~~Lr~~~~~~pv~vKl~~~~----~~~~i~~~v----~ka~~D~I~IdG~eG---GTGAap~~~~d~~Gl 621 (771)
T d1ea0a2 553 YSIEDLAQLIYDLKQINPDAKVTVKLVSRS----GIGTIAAGV----AKANADIILISGNSG---GTGASPQTSIKFAGL 621 (771)
T ss_dssp SSHHHHHHHHHHHHHHCTTCEEEEEEECCT----THHHHHHHH----HHTTCSEEEEECTTC---CCSSEETTHHHHSCC
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEECCcC----cHHHHHHHH----HhcCCCEEEEecCCC---ccccccHHHhhcCCc
Confidence 46788999999999866 899999987532 233443332 368999999998753 22111000000 00
Q ss_pred cHH-HHHH----HHhhC--CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017176 194 KYE-YYYA----LLRDF--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 194 ~~~-~v~~----~~~~~--~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
-|+ .+.+ +.+.- -+|.+++.|++.|+.|+..++..|||+|.+||++|-
T Consensus 622 P~~~~l~~~~~~L~~~glr~~V~l~a~Ggl~t~~Dv~ka~aLGAD~v~~gt~~m~ 676 (771)
T d1ea0a2 622 PWEMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASLI 676 (771)
T ss_dssp CHHHHHHHHHHHHHTTTCTTTSEEEEESSCCSHHHHHHHHHTTCSEEECCHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCHHHHHHHHHhCCCchHHhHHHHH
Confidence 022 1222 22211 259999999999999999999999999999999984
|
| >d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.25 E-value=0.00019 Score=62.87 Aligned_cols=204 Identities=14% Similarity=0.116 Sum_probs=117.0
Q ss_pred CCCeecCCcEEEccCCCCChHHH-HHHHHHhCCCcEEEecceeecccccccchhhhhhccC-CCCCCEEEEecC-CCHHH
Q 017176 2 VARQYLPPWFSVAPMMDWTDNHY-RTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFS-PEQHPIVLQIGG-SNLDN 78 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~-r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~-~~~~p~~vQL~g-~~~~~ 78 (376)
|++.++++|+++.- +.+.+... .....+. |+.++ |=.+.-..+. .......++.+- +.+..+..+-.| .++++
T Consensus 5 I~~~~f~SRLilGT-Gky~s~~~~~~ai~aS-gaeiV-TVAvRR~~~~-~~~~~~~l~~~i~~~~~~~LPNTAGc~taee 80 (243)
T d1wv2a_ 5 IAGRTYGSRLLVGT-GKYKDLDETRRAIEAS-GAEIV-TVAVRRTNIG-QNPDEPNLLDVIPPDRYTILPNTAGCYDAVE 80 (243)
T ss_dssp ETTEEESCCEEECC-SCSSSHHHHHHHHHHS-CCSEE-EEEGGGCCC--------------CTTTSEEEEECTTCCSHHH
T ss_pred ECCEEEEcceEEEc-CCCCCHHHHHHHHHHh-CCCEE-EEEccccccC-CCcccchHHHhccccCeeecccccccccHHH
Confidence 67899999999853 33544444 4444554 45554 2111111111 111112233332 233334566555 47899
Q ss_pred HHHHHHHHHHCC--CCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHH
Q 017176 79 LAKATELANAYN--YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 156 (376)
Q Consensus 79 ~~~aa~~~~~~G--~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~ 156 (376)
-.++|+++.+.+ -+.|.+.. ..... .|+.|+-...+..+.+.+. ++-|..-+.. | .
T Consensus 81 Av~~A~larE~~~~~~~iKLEV-------i~d~~---~L~Pd~~etl~Aa~~Lv~e-gF~Vlpy~~~---D---~----- 138 (243)
T d1wv2a_ 81 AVRTCRLARELLDGHNLVKLEV-------LADQK---TLFPNVVETLKAAEQLVKD-GFDVMVYTSD---D---P----- 138 (243)
T ss_dssp HHHHHHHHHTTTTSCCEEEECC-------BSCTT---TCCBCHHHHHHHHHHHHTT-TCEEEEEECS---C---H-----
T ss_pred HHHHHHHHHHHhCCCceEEEee-------ecccc---ccCCcHHHHHHHHHHhhcC-ceEEEeccCC---C---H-----
Confidence 999999999963 47888852 32222 3566776666666655432 4444443321 1 1
Q ss_pred HHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017176 157 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 157 ~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
.+++.+++.|+..+---+- ..-+|. ...+...+..++++ +++|||..+||-++.|+..+++.|||+|.+.
T Consensus 139 v~ak~le~~Gc~~vMplgs-PIGsg~--------Gi~n~~~l~~i~~~-~~vpvivdAGIg~psdaa~AMElG~dgVLvn 208 (243)
T d1wv2a_ 139 IIARQLAEIGCIAVMPLAG-LIGSGL--------GICNPYNLRIILEE-AKVPVLVDAGVGTASDAAIAMELGCEAVLMN 208 (243)
T ss_dssp HHHHHHHHSCCSEEEECSS-STTCCC--------CCSCHHHHHHHHHH-CSSCBEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHhHHHHcCceeeeeccc-cccccc--------ccccHHHHHhcccc-CCcceEeecccCCHHHHHHHHHccCCEEEec
Confidence 1345568899987664332 111111 11223445555554 6999999999999999999999999999999
Q ss_pred hHHhh
Q 017176 237 RAAYQ 241 (376)
Q Consensus 237 Ra~l~ 241 (376)
+|...
T Consensus 209 saIa~ 213 (243)
T d1wv2a_ 209 TAIAH 213 (243)
T ss_dssp HHHHT
T ss_pred hHhhc
Confidence 99863
|
| >d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: PdxS-like domain: Pyridoxal biosynthesis lyase PdxS species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.24 E-value=7.1e-06 Score=71.30 Aligned_cols=146 Identities=21% Similarity=0.269 Sum_probs=88.4
Q ss_pred HHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHH
Q 017176 81 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 160 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~ 160 (376)
+-|+.++++|.-.|------|.. .|+.+ |-+-|.+|..+.+|.+++ .+|+..|.|+|- +.+ ++
T Consensus 12 eqA~iAe~aGAvaVmaLervpad--iR~~G-GvaRm~dp~~i~ei~~~v----sipvmak~righ-----~~e-----aq 74 (254)
T d1znna1 12 EQAKIAEAAGAVAVMALERVPAD--IRAAG-GVARMADPTVIEEVMNAV----SIPVMAKVRIGH-----YVE-----AR 74 (254)
T ss_dssp HHHHHHHHHTCSEEEECC-----------C-CCCCCCCHHHHHHHHHHC----SSCEEEEEETTC-----HHH-----HH
T ss_pred HHHHHhhccCceeEeeeccCCHH--HHhcC-CcccCCCHHHHHHHHHhc----ccccccccCCCc-----hHH-----HH
Confidence 46788899997666333234543 45555 888899999998888774 699999999972 111 34
Q ss_pred HhhcCCccEEEEcc------------------------Cc------------cc--cCCCCCCCC---------------
Q 017176 161 VSSLSPTRHFIIHS------------------------RK------------AL--LNGISPAEN--------------- 187 (376)
Q Consensus 161 ~~e~~Gvd~I~vh~------------------------r~------------~~--~~g~~~~~~--------------- 187 (376)
++++.|+|++.=+. |+ .+ .+|..+..+
T Consensus 75 iLe~~~vd~ideseVLTpad~~~hi~k~~fkvpfVcg~r~Lgealrri~EgAamIrtkGeagtgnvveav~h~R~i~~~i 154 (254)
T d1znna1 75 VLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQI 154 (254)
T ss_dssp HHHHHTCSEEEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHTTCSEEEECCCTTSCCCHHHHHHHHHHHHHH
T ss_pred hHHhhCCCcccHhHhcccccHHHhhcccceeeeeeCCCCccchhHHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHHHHH
Confidence 56666777665210 00 00 011111000
Q ss_pred --------CCCC------cccHHHHHHHHhh-CCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017176 188 --------RTIP------PLKYEYYYALLRD-FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 188 --------~~~~------~~~~~~v~~~~~~-~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
.... ...++++.++.+. ...+|+++.|||-|+.|+..+++.|||+|.+|+|+..-.
T Consensus 155 ~~~~~m~~~el~~~ak~lg~p~~l~~~v~~~g~l~v~~~~~~Gi~tpadaa~~MelG~dgV~v~s~I~~s~ 225 (254)
T d1znna1 155 RKVVNMSEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSE 225 (254)
T ss_dssp HHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHTSCSSEEEEESSCCSHHHHHHHHHTTCSEEEECGGGGGSS
T ss_pred HHHHcCCHHHHHHHHHhhCCchHHHHHHHHhCCCCceEEecCCCCChhhHHHHHHcCCCEEEEcchhhcCC
Confidence 0000 0013445555543 247999999999999999999999999999999986543
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=98.07 E-value=1.2e-05 Score=74.27 Aligned_cols=70 Identities=7% Similarity=0.061 Sum_probs=57.0
Q ss_pred HhhcCCccEEEEccCcc--ccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEch
Q 017176 161 VSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGR 237 (376)
Q Consensus 161 ~~e~~Gvd~I~vh~r~~--~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGR 237 (376)
.+++.|+..|.++.-.. +..|. +++.+.++.+.. ++|||++||+.+.+|+.+++. .++++|.+|+
T Consensus 228 ~~~~~G~GEIlltdIdrDGt~~G~-----------D~el~~~i~~~~-~iPiIasGGi~s~~di~~ll~~~~v~gv~~gs 295 (323)
T d1jvna1 228 ACEALGAGEILLNCIDKDGSNSGY-----------DLELIEHVKDAV-KIPVIASSGAGVPEHFEEAFLKTRADACLGAG 295 (323)
T ss_dssp HHHHTTCCEEEECCGGGTTTCSCC-----------CHHHHHHHHHHC-SSCEEECSCCCSHHHHHHHHHHSCCSEEEESH
T ss_pred hhhccCcceeEEEeeccccccccc-----------chhHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHhCCCeEEEEhh
Confidence 34689999999986543 33332 378888887765 899999999999999999987 8999999999
Q ss_pred HHhhC
Q 017176 238 AAYQN 242 (376)
Q Consensus 238 a~l~~ 242 (376)
++..+
T Consensus 296 ~~~~~ 300 (323)
T d1jvna1 296 MFHRG 300 (323)
T ss_dssp HHHTT
T ss_pred HHHcC
Confidence 98744
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=98.02 E-value=3.1e-05 Score=69.10 Aligned_cols=142 Identities=13% Similarity=0.188 Sum_probs=95.1
Q ss_pred EEEEecCC--CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEec-
Q 017176 67 IVLQIGGS--NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCR- 142 (376)
Q Consensus 67 ~~vQL~g~--~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR- 142 (376)
+-+|+.|. +. +.++.+-++|++-|-+ |+.+.++|+++.++.+..-... -.-+.+|.+
T Consensus 75 ~pi~vgGGIrs~----e~~~~ll~~Ga~kVii---------------~s~~~~n~~~i~~~~~~~G~q~iv~~id~~~~~ 135 (251)
T d1ka9f_ 75 IPLTVGGGVRSL----EDARKLLLSGADKVSV---------------NSAAVRRPELIRELADHFGAQAVVLAIDARWRG 135 (251)
T ss_dssp SCEEEESSCCSH----HHHHHHHHHTCSEEEE---------------CHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEET
T ss_pred cchheeccccCH----HHHHHHHHcCCCEEEE---------------CchhhhCHHHHHHHHHhhcccccccccchhhcc
Confidence 44566654 33 3445566778887755 4556678999999999875432 222333322
Q ss_pred -------CCCCCCc--cHHHHHHHHHHHhhcCCccEEEEcc--CccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEE
Q 017176 143 -------IGVDDHD--SYNQLCDFIYKVSSLSPTRHFIIHS--RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 211 (376)
Q Consensus 143 -------~g~~~~~--~~~~~~~~i~~~~e~~Gvd~I~vh~--r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi 211 (376)
-||.... +..+.+. .+++.|+..+.++. +.....|. +++.+.++.+. .++|+|
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~g~~eii~tdi~~dG~~~G~-----------d~~l~~~i~~~-~~~pii 199 (251)
T d1ka9f_ 136 DFPEVHVAGGRVPTGLHAVEWAV----KGVELGAGEILLTSMDRDGTKEGY-----------DLRLTRMVAEA-VGVPVI 199 (251)
T ss_dssp TEEEEEETTTTEEEEEEHHHHHH----HHHHHTCCEEEEEETTTTTTCSCC-----------CHHHHHHHHHH-CSSCEE
T ss_pred cceEEEeccceecCCccHHHHHH----HHHhcCCCEEEEEeecccCccCCc-----------chhHHHHHHhh-cceeEE
Confidence 2454432 3444432 23578999999974 33333332 37778787766 489999
Q ss_pred EecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017176 212 LNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 212 ~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
+.||+.+.+|+.++++.|+++|.+|+++...-
T Consensus 200 ~~GGv~~~~dl~~l~~~g~~gviig~al~~g~ 231 (251)
T d1ka9f_ 200 ASGGAGRMEHFLEAFQAGAEAALAASVFHFGE 231 (251)
T ss_dssp EESCCCSHHHHHHHHHTTCSEEEESHHHHTTS
T ss_pred EecCCCCHHHHHHHHHCCCCEEEEhHHHHcCC
Confidence 99999999999999999999999999987543
|
| >d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Synechocystis sp. [TaxId: 1143]
Probab=98.02 E-value=9.7e-06 Score=82.46 Aligned_cols=115 Identities=16% Similarity=0.131 Sum_probs=75.2
Q ss_pred CCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCc--c
Q 017176 117 LDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP--L 193 (376)
Q Consensus 117 ~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~--~ 193 (376)
..++-+.+.|..+|+.. +.||.||+-.... +..++..+ .++|+|.|+|.|... |++.+....+.. +
T Consensus 580 ysiedL~q~I~~Lr~~~~~~pv~vKl~~~~g----~~~ia~~v----aka~aD~I~IdG~eG---GTGAap~~~~~~~Gl 648 (809)
T d1ofda2 580 YSIEDLAQLIYDLHQINPEAQVSVKLVAEIG----IGTIAAGV----AKANADIIQISGHDG---GTGASPLSSIKHAGS 648 (809)
T ss_dssp SSHHHHHHHHHHHHHHCTTSEEEEEEECSTT----HHHHHHHH----HHTTCSEEEEECTTC---CCSSEEHHHHHHBCC
T ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEeeecC----hHHHHHHH----hhcCCCEEEEeCCCC---ccccccHHHHhcCCc
Confidence 35788999999999865 7899999875321 22332222 258999999998653 221110000000 0
Q ss_pred cHH-HHH----HHHhhCC--CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 194 KYE-YYY----ALLRDFP--DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 194 ~~~-~v~----~~~~~~~--~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
-|+ .+. .+.+.-. +|.+++.|++.|+.|+..++..|||.|.+||++|--
T Consensus 649 P~~~gl~~a~~~L~~~glR~~V~Lia~Ggl~t~~Dv~ka~aLGAD~v~~gt~~l~a 704 (809)
T d1ofda2 649 PWELGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAMIA 704 (809)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGCEEEEESSCCSHHHHHHHHHTTCSEEECSHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCHHHHHHHHHhCCCchhHhHHHHHH
Confidence 022 122 2222211 599999999999999999999999999999998854
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=98.01 E-value=4.7e-05 Score=67.93 Aligned_cols=142 Identities=11% Similarity=0.147 Sum_probs=92.3
Q ss_pred EEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcc-cCccEEEEe-----
Q 017176 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVSVKC----- 141 (376)
Q Consensus 68 ~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~-~~~pv~vKi----- 141 (376)
=+|+.|.- .. .+.++.+.++|++-|-| |+.+.++|+++.++.+..-+. +-..+.++.
T Consensus 76 pi~vgGGI-r~-~e~i~~~l~~Ga~kvii---------------gs~~~~n~~~l~~~~~~~G~~~iv~~id~~~~~~~~ 138 (253)
T d1thfd_ 76 PFTVGGGI-HD-FETASELILRGADKVSI---------------NTAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEF 138 (253)
T ss_dssp CEEEESSC-CS-HHHHHHHHHTTCSEEEE---------------SHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEE
T ss_pred cceeeccc-cc-chhhhhHHhcCCCEEEE---------------ChHHhhChHHHHHHHHHcCCeeEEEeeeecccCCce
Confidence 35666542 11 22445566779887755 566678899999999988432 212222221
Q ss_pred ---cCCCCCCc--cHHHHHHHHHHHhhcCCccEEEEccCc--cccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEec
Q 017176 142 ---RIGVDDHD--SYNQLCDFIYKVSSLSPTRHFIIHSRK--ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 214 (376)
Q Consensus 142 ---R~g~~~~~--~~~~~~~~i~~~~e~~Gvd~I~vh~r~--~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nG 214 (376)
.-+|.... +..+.+ .+ +++.|+..|.++.=. ....|. +++.+..+.+. .++|||+.|
T Consensus 139 ~~~~~~~~~~~~~~~~~~~---~~-~~~~g~~eii~tdI~~dGt~~G~-----------d~~ll~~i~~~-~~~pvi~~G 202 (253)
T d1thfd_ 139 MVFTYSGKKNTGILLRDWV---VE-VEKRGAGEILLTSIDRDGTKSGY-----------DTEMIRFVRPL-TTLPIIASG 202 (253)
T ss_dssp EEEETTTTEEEEEEHHHHH---HH-HHHTTCSEEEEEETTTTTSCSCC-----------CHHHHHHHGGG-CCSCEEEES
T ss_pred eeeeeecccccchhHHHHH---HH-HHhccCCEEEEEEecccCccCCc-----------ccccccccccc-ccceEEEec
Confidence 11343321 244433 32 457899999887432 233332 37777776554 589999999
Q ss_pred CCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 215 GINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 215 gI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
|+.+.+|+.+++..|+++|.+|++++.+
T Consensus 203 Gv~s~~di~~l~~~g~~gvivgsal~~~ 230 (253)
T d1thfd_ 203 GAGKMEHFLEAFLAGADAALAASVFHFR 230 (253)
T ss_dssp CCCSHHHHHHHHHTTCSEEEESHHHHTT
T ss_pred CCCCHHHHHHHHHCCCCEEEEchHHHcC
Confidence 9999999999999999999999998754
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.01 E-value=3.7e-05 Score=68.63 Aligned_cols=142 Identities=14% Similarity=0.157 Sum_probs=93.7
Q ss_pred EEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhc-ccCccEEEEec----
Q 017176 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-NTNVPVSVKCR---- 142 (376)
Q Consensus 68 ~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~-~~~~pv~vKiR---- 142 (376)
-+|+.|.-. .+ +.++.+.++|++-|-+ |+....+|+++.++.+..-+ .+-+.+.+|..
T Consensus 78 pi~~gGGIr-~~-e~~~~ll~~G~~kVii---------------~s~~~~~~~~~~~~~~~~G~q~iv~slD~~~~~~~~ 140 (252)
T d1h5ya_ 78 PVLVGGGVR-SL-EDATTLFRAGADKVSV---------------NTAAVRNPQLVALLAREFGSQSTVVAIDAKWNGEYY 140 (252)
T ss_dssp CEEEESSCC-SH-HHHHHHHHHTCSEEEE---------------SHHHHHCTHHHHHHHHHHCGGGEEEEEEEEECSSSE
T ss_pred cceeecccc-hh-hhhhhHhhcCCcEEEe---------------cccccCCcchHHHHHHhcCCCcEEEEEEEEEcCCcE
Confidence 356655321 11 3444555678888755 44556788999999988743 23334444422
Q ss_pred ----CCCCCCc--cHHHHHHHHHHHhhcCCccEEEEccC--ccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEec
Q 017176 143 ----IGVDDHD--SYNQLCDFIYKVSSLSPTRHFIIHSR--KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 214 (376)
Q Consensus 143 ----~g~~~~~--~~~~~~~~i~~~~e~~Gvd~I~vh~r--~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nG 214 (376)
-||.+.. +..++++ .+++.|+..+.++.- .....|. +++.+.++.+.. ++||+++|
T Consensus 141 ~v~~~~~~~~~~~~~~~~~~----~~~~~g~~eii~tdI~~dG~~~G~-----------d~~~~~~i~~~~-~~pii~~G 204 (252)
T d1h5ya_ 141 EVYVKGGREATGLDAVKWAK----EVEELGAGEILLTSIDRDGTGLGY-----------DVELIRRVADSV-RIPVIASG 204 (252)
T ss_dssp EEEETTTTEEEEEEHHHHHH----HHHHHTCSEEEEEETTTTTTCSCC-----------CHHHHHHHHHHC-SSCEEEES
T ss_pred EEEEeCCeEcCCCCHHHHHH----HHHhcCCCEEEEEeecccCccCCc-----------CHHHHHHHHHhc-CCCEEEec
Confidence 1454432 3444433 345789999988743 2233332 377788877654 89999999
Q ss_pred CCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 215 GINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 215 gI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
||.+.+|+.++.+.|+++|.+|++++.+
T Consensus 205 Gv~~~~di~~l~~~g~~gv~~gs~l~~~ 232 (252)
T d1h5ya_ 205 GAGRVEHFYEAAAAGADAVLAASLFHFR 232 (252)
T ss_dssp CCCSHHHHHHHHHTTCSEEEESHHHHTT
T ss_pred CCCCHHHHHHHHHCCCCEEEEhhHHHcC
Confidence 9999999999888999999999998644
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=98.00 E-value=6.3e-05 Score=67.32 Aligned_cols=165 Identities=18% Similarity=0.238 Sum_probs=103.2
Q ss_pred EEEEecC--CCHHHHHHHHHHHHHCCCCEEEec--CCCCCcc----------ccCCCCccccccCCHHHHHHHHHHHhcc
Q 017176 67 IVLQIGG--SNLDNLAKATELANAYNYDEINLN--CGCPSPK----------VAGHGCFGVSLMLDPKFVGEAMSVIAAN 132 (376)
Q Consensus 67 ~~vQL~g--~~~~~~~~aa~~~~~~G~d~IeiN--~gcP~~~----------v~r~g~yG~~l~~~~~~~~eiv~~v~~~ 132 (376)
++.=+.. .+.+.+.++++.+.++|+|.|||- ++.|... .... | -+.+.+.++++.+++.
T Consensus 19 li~y~~aG~P~~~~~~~~l~~l~~~G~DiiElGiPfSDP~aDGpvIq~a~~rAL~~---G----~~~~~~~~~~~~~r~~ 91 (261)
T d1rd5a_ 19 FIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALAS---G----TTMDAVLEMLREVTPE 91 (261)
T ss_dssp EEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTT---T----CCHHHHHHHHHHHGGG
T ss_pred EEEEEeCcCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCcCCcceeeeeeecccc---C----cchhhhhhhhhccccc
Confidence 4444443 367899999999999999999997 3455320 1111 3 3668899999999988
Q ss_pred cCccEEEEecC--------------CCCCC----ccHHHHHHHHHHHhhcCCccEEEEccC-cc----------------
Q 017176 133 TNVPVSVKCRI--------------GVDDH----DSYNQLCDFIYKVSSLSPTRHFIIHSR-KA---------------- 177 (376)
Q Consensus 133 ~~~pv~vKiR~--------------g~~~~----~~~~~~~~~i~~~~e~~Gvd~I~vh~r-~~---------------- 177 (376)
.+.|+.+=.-. |++.. ..++|.- .+...+.+.|++.|-+-.- +.
T Consensus 92 ~~~p~ilm~Y~n~~~~~~~~~~~~~GvdG~IipDlp~eE~~-~~~~~~~~~gl~~I~lvaPtt~~~Ri~~i~~~a~gFvY 170 (261)
T d1rd5a_ 92 LSCPVVLLSYYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAH-SLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVY 170 (261)
T ss_dssp CSSCEEEECCSHHHHSCCTHHHHHTTCCEEECTTCBTTTHH-HHHHHHHHTTCEECEEECTTSCHHHHHHHHHHCCSCEE
T ss_pred ccCceeeeeeecchhhHHHHHHHhcCceeeeecCccHHHHH-HHHHHHhccccceEEEeccCCchhHHHHHHhcCcchhh
Confidence 88887643211 11110 0111211 1233455678877765321 10
Q ss_pred --ccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017176 178 --LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 178 --~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
...|..+.... ...-..+.+..+++. .++||+.--||.+++|+.++.+.|||||.+|++++.
T Consensus 171 ~vs~~GvTG~~~~-~~~~~~~~i~~ik~~-t~~Pi~vGFGI~~~e~v~~~~~~gaDGvIVGSaiv~ 234 (261)
T d1rd5a_ 171 LVSVNGVTGPRAN-VNPRVESLIQEVKKV-TNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVR 234 (261)
T ss_dssp EECSSCCBCTTSC-BCTHHHHHHHHHHHH-CSSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred hhhccCccccccc-chhHHHHHHHHhhhc-cCCCeEEEcCCCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 11233332221 112224566666655 599999999999999999999999999999999864
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=97.97 E-value=6.7e-05 Score=64.59 Aligned_cols=149 Identities=16% Similarity=0.232 Sum_probs=103.2
Q ss_pred CCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCcc-----cc----CCCCccccccCCHHHHHHHHHHHhcccCc
Q 017176 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPK-----VA----GHGCFGVSLMLDPKFVGEAMSVIAANTNV 135 (376)
Q Consensus 65 ~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~-----v~----r~g~yG~~l~~~~~~~~eiv~~v~~~~~~ 135 (376)
.|++.=|.+.++++....++.+.+.|++.+||.+-+|... .. ..-..|+.-..+++.+.+.+++ +.
T Consensus 9 ~~iipvlr~~~~~~a~~~~~al~~~Gi~~iEitlr~p~a~~~i~~l~~~~~~~~~vGaGTV~~~~~~~~a~~a-----Ga 83 (202)
T d1wa3a1 9 HKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVES-----GA 83 (202)
T ss_dssp HCEEEEECCSSHHHHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHH-----TC
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHhcCCCcEEEecccccHHHHHHHHhh-----cc
Confidence 4677778899999999999999999999999999888531 00 1122466666677777776665 22
Q ss_pred cEEEEecCCCCCC----------------ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHH
Q 017176 136 PVSVKCRIGVDDH----------------DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 199 (376)
Q Consensus 136 pv~vKiR~g~~~~----------------~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~ 199 (376)
.+.| .+|++.. .+..|+.. . .++|++.+-+++... .| -.+++
T Consensus 84 ~fiv--sP~~~~~v~~~~~~~~i~~iPGv~TpsEi~~----A-~~~G~~~lK~fPa~~--~G-------------~~~lk 141 (202)
T d1wa3a1 84 EFIV--SPHLDEEISQFCKEKGVFYMPGVMTPTELVK----A-MKLGHTILKLFPGEV--VG-------------PQFVK 141 (202)
T ss_dssp SEEE--CSSCCHHHHHHHHHHTCEEECEECSHHHHHH----H-HHTTCCEEEETTHHH--HH-------------HHHHH
T ss_pred cEEe--CCCCcHHHHHHHHhcCCceeCCcCcHHHHHH----H-HHCCCCEEEecchhh--cC-------------HHHHH
Confidence 3333 4444320 12223222 2 257888877765431 11 24566
Q ss_pred HHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017176 200 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 200 ~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
.+..-+|++|++..||| |.+++.+.++.|+.+|.+|+.+..
T Consensus 142 ~l~~p~p~i~~iptGGI-~~~n~~~~l~aga~avg~Gs~l~~ 182 (202)
T d1wa3a1 142 AMKGPFPNVKFVPTGGV-NLDNVCEWFKAGVLAVGVGSALVK 182 (202)
T ss_dssp HHHTTCTTCEEEEBSSC-CTTTHHHHHHHTCSCEEECHHHHC
T ss_pred HHhCcccCCcEEeeCCC-CHHHHHHHHHCCCeEEEEchhhcC
Confidence 77777889999999999 789999999999999999998764
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=97.96 E-value=4.4e-05 Score=67.46 Aligned_cols=141 Identities=18% Similarity=0.331 Sum_probs=88.9
Q ss_pred EEEEecCC--CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe---
Q 017176 67 IVLQIGGS--NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC--- 141 (376)
Q Consensus 67 ~~vQL~g~--~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi--- 141 (376)
+=+|+.|. +.+ .++.+-+.|+|-|-+ |+...++|+++.++.+...+.+-+-+.+|-
T Consensus 75 ~pi~vGGGIrs~~----~~~~ll~~Ga~kVvi---------------~s~~~~~~~~~~~~~~~~g~~~vv~~d~~~~~~ 135 (239)
T d1vzwa1 75 IKVELSGGIRDDD----TLAAALATGCTRVNL---------------GTAALETPEWVAKVIAEHGDKIAVGLDVRGTTL 135 (239)
T ss_dssp SEEEEESSCCSHH----HHHHHHHTTCSEEEE---------------CHHHHHCHHHHHHHHHHHGGGEEEEEEEETTEE
T ss_pred cceEeecccccch----hhhhhhccccccchh---------------hHHhhhccccchhhhccCCceeeeeeccceeee
Confidence 44677664 433 334556678887765 445667899999999987654322222221
Q ss_pred -cCCCCCC-ccHHHHHHHHHHHhhcCCccEEEEcc--CccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCC
Q 017176 142 -RIGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHS--RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 217 (376)
Q Consensus 142 -R~g~~~~-~~~~~~~~~i~~~~e~~Gvd~I~vh~--r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~ 217 (376)
.-||... ....+.+ .+ +.+.|+..|.++. +.....|. +++.+..+.+. .++|||++|||.
T Consensus 136 ~~~g~~~~~~~~~~~~---~~-~~~~g~~eii~tdi~~dGt~~G~-----------d~~l~~~i~~~-~~~pvi~sGGv~ 199 (239)
T d1vzwa1 136 RGRGWTRDGGDLYETL---DR-LNKEGCARYVVTDIAKDGTLQGP-----------NLELLKNVCAA-TDRPVVASGGVS 199 (239)
T ss_dssp CCSSSCCCCCBHHHHH---HH-HHHTTCCCEEEEEC-------CC-----------CHHHHHHHHHT-CSSCEEEESCCC
T ss_pred cCccceeeccccchhh---hh-hhhccccEEEEEeecccceecCC-----------cchhhhhhhhc-cCceEEEECCCC
Confidence 1134332 1233332 22 3468999999874 33333342 26777777665 589999999999
Q ss_pred CHHHHHHHHH---cCcCeeEEchHHhhC
Q 017176 218 TVDEVNAALR---KGAHHVMVGRAAYQN 242 (376)
Q Consensus 218 s~~da~~~l~---~Gad~VmiGRa~l~~ 242 (376)
+.+|+.++-+ .|+|+|.+|++++..
T Consensus 200 s~~Di~~l~~l~~~g~~gvivg~al~~g 227 (239)
T d1vzwa1 200 SLDDLRAIAGLVPAGVEGAIVGKALYAK 227 (239)
T ss_dssp SHHHHHHHHTTGGGTEEEEEECHHHHTT
T ss_pred CHHHHHHHHhhhhCCccEeeEhHHHHCC
Confidence 9999998743 699999999998654
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=97.93 E-value=0.00013 Score=65.40 Aligned_cols=170 Identities=16% Similarity=0.161 Sum_probs=97.8
Q ss_pred EEEEecC--CCHHHHHHHHHHHHHCCCCEEEecCC--CCCcc---ccCCCCcccccc--CCHHHHHHHHHHHhccc-Ccc
Q 017176 67 IVLQIGG--SNLDNLAKATELANAYNYDEINLNCG--CPSPK---VAGHGCFGVSLM--LDPKFVGEAMSVIAANT-NVP 136 (376)
Q Consensus 67 ~~vQL~g--~~~~~~~~aa~~~~~~G~d~IeiN~g--cP~~~---v~r~g~yG~~l~--~~~~~~~eiv~~v~~~~-~~p 136 (376)
++.=+.+ .+.+.+.++++.+.+.|+|.|||.+- -|... +.+.. --+|. -+.+.+.++++.+++.. +.|
T Consensus 19 li~y~t~G~P~~~~~~~~~~~l~~~GaDiiElGiPfSDP~aDGpvIq~a~--~~al~~G~~~~~~~~~~~~~r~~~~~~p 96 (267)
T d1qopa_ 19 FVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNAN--LRAFAAGVTPAQCFEMLAIIREKHPTIP 96 (267)
T ss_dssp EEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHH--HHHHHTTCCHHHHHHHHHHHHHHCSSSC
T ss_pred EEEEEeCcCCCHHHHHHHHHHHHHcCCCEEEECCCCCcccccchHHHhhh--hhcccccchhhhhhhhhhhhcccccccc
Confidence 4444433 46788899999999999999999642 33210 00000 00111 35678889999888764 678
Q ss_pred EEEEe------cCCCCCC----------------ccHHHHHHHHHHHhhcCCccEEEEccC-cc----------------
Q 017176 137 VSVKC------RIGVDDH----------------DSYNQLCDFIYKVSSLSPTRHFIIHSR-KA---------------- 177 (376)
Q Consensus 137 v~vKi------R~g~~~~----------------~~~~~~~~~i~~~~e~~Gvd~I~vh~r-~~---------------- 177 (376)
+.+=. +.|.+.. ..+++. ..+...+.+.|++.|.+-.- +.
T Consensus 97 ivlm~Y~N~i~~~G~~~f~~~~~~~Gv~GliipDlP~ee~-~~~~~~~~~~~l~~I~lvaPtt~~~Ri~~i~~~a~gFiY 175 (267)
T d1qopa_ 97 IGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEES-APFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTY 175 (267)
T ss_dssp EEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGC-HHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSCEE
T ss_pred eEEEeeccchhhcCchHHHHHHHhcCCCceeccchhhhhh-HHHHHhhhccCceEEEEecccccHHHHHHHHhhCchhhh
Confidence 75532 1111100 001111 11223344566665544211 10
Q ss_pred --ccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017176 178 --LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 178 --~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
...|.++... ....-..+.+..+++ ..++||+.--||.|++|+.++++.+||||.||++++.
T Consensus 176 ~vs~~GvTG~~~-~~~~~~~~~i~~ik~-~t~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGSAivk 239 (267)
T d1qopa_ 176 LLSRSGVTGAEN-RGALPLHHLIEKLKE-YHAAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVK 239 (267)
T ss_dssp EESSSSCCCSSS-CC--CCHHHHHHHHH-TTCCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred hhcccccCCccc-ccchhHHHHHHHHhh-hccCCceeecccCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 1123333221 112222456767665 4599999999999999999999999999999999875
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.84 E-value=0.00026 Score=62.42 Aligned_cols=52 Identities=19% Similarity=0.335 Sum_probs=44.0
Q ss_pred cHHHHHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 194 KYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 194 ~~~~v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
+.+...++....| ++.+|+-+||.+++|+.++.+.|+|+|.||.+++.+|..
T Consensus 189 d~~~~~~L~~~ip~~~~~IaESGI~t~~dv~~l~~~G~davLIGeaLmk~~d~ 241 (247)
T d1a53a_ 189 NKENQRKLISMIPSNVVKVAESGISERNEIEELRKLGVNAFLIGSSLMRNPEK 241 (247)
T ss_dssp CHHHHHHHHHHSCTTSEEEEESCCCCHHHHHHHHHTTCCEEEECHHHHHCTTH
T ss_pred hhhHHHHHHhhCCCCCeEEEecCCCCHHHHHHHHHCCCCEEEECHHHcCCCch
Confidence 3455556666665 689999999999999999988999999999999999974
|
| >d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Aquifex aeolicus [TaxId: 63363]
Probab=97.68 E-value=0.00034 Score=60.94 Aligned_cols=138 Identities=12% Similarity=0.058 Sum_probs=85.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 154 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~ 154 (376)
..+.-..-++.+.+.|+|.||+=+ .||.-...+.+.+.+-++++++.++-+ .+|+-+-... -+-+++
T Consensus 68 ~~~~K~~E~~~Ai~~GAdEID~Vi-----------n~~~l~~g~~~~v~~ei~~v~~~~~~~-~lKVIlEt~~-L~~~ei 134 (225)
T d1mzha_ 68 KTSVKVKEAVEAVRDGAQELDIVW-----------NLSAFKSEKYDFVVEELKEIFRETPSA-VHKVIVETPY-LNEEEI 134 (225)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEC-----------CHHHHHTTCHHHHHHHHHHHHHTCTTS-EEEEECCGGG-CCHHHH
T ss_pred cHHHHHHHHHHHHHcCCCeEEEee-----------chhhhhcccHHHHHHHHHHHHHhccCc-eeehhhhhcc-CCHHHH
Confidence 344444555677778999999942 135445567788888888887766322 3455442111 122343
Q ss_pred HHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCee
Q 017176 155 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHV 233 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~V 233 (376)
. .+.+++.++|+|+|--+.+... .| + ..+.+..+.+.. .++.|=++|||+|.+++.++++.||+-+
T Consensus 135 ~-~a~~~a~~aGadfiKTSTG~~~-~g---a--------t~e~v~~m~~~~~~~~~iKasGGIrt~~~a~~~i~~Ga~Ri 201 (225)
T d1mzha_ 135 K-KAVEICIEAGADFIKTSTGFAP-RG---T--------TLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAGADRI 201 (225)
T ss_dssp H-HHHHHHHHHTCSEEECCCSCSS-SC---C--------CHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred H-HHHHHHHHcccceEeecCCCCC-CC---C--------CHHHHHHHHHHhCCCceEECcCCCCCHHHHHHHHHhchhhe
Confidence 3 3455667899999987655321 11 1 133333333322 2689999999999999999999999965
Q ss_pred EEchH
Q 017176 234 MVGRA 238 (376)
Q Consensus 234 miGRa 238 (376)
.-..+
T Consensus 202 GtSs~ 206 (225)
T d1mzha_ 202 GTSSG 206 (225)
T ss_dssp EESCH
T ss_pred ecCcH
Confidence 55444
|
| >d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermus thermophilus [TaxId: 274]
Probab=97.67 E-value=0.00048 Score=59.38 Aligned_cols=139 Identities=13% Similarity=0.120 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 154 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~ 154 (376)
..+.-..-++.+.+.|+|.||+=+ .||.-+..+.+.+.+-++++++.++. ..+|+-+-.... +-+++
T Consensus 68 ~~~~k~~e~~~ai~~GA~EiD~V~-----------n~~~~~~g~~~~v~~ei~~v~~~~~~-~~lKVIlEt~~L-~~~ei 134 (211)
T d1ub3a_ 68 EKEVKALEAALACARGADEVDMVL-----------HLGRAKAGDLDYLEAEVRAVREAVPQ-AVLKVILETGYF-SPEEI 134 (211)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEC-----------CHHHHHTTCHHHHHHHHHHHHHHSTT-SEEEEECCGGGS-CHHHH
T ss_pred cHHHHHHHHHHHHHcCCCeEEEee-----------ccchhhcCCHHHHHHHHHHHHHhccC-CceEEEeccccC-CHHHH
Confidence 455555566677788999999832 15666667888898888888887752 345665432221 22333
Q ss_pred HHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeE
Q 017176 155 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM 234 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vm 234 (376)
. .+.+++.++|+|+|--+.+... .| + .+-....+.+..+. ++.|=++|||+|.+++.++++.||+-+.
T Consensus 135 ~-~a~~~a~~aGadfiKTSTG~~~-~g---a-----t~e~v~~m~~~~~~--~~~iKasGGIrt~~~a~~~l~aGa~riG 202 (211)
T d1ub3a_ 135 A-RLAEAAIRGGADFLKTSTGFGP-RG---A-----SLEDVALLVRVAQG--RAQVKAAGGIRDRETALRMLKAGASRLG 202 (211)
T ss_dssp H-HHHHHHHHHTCSEEECCCSSSS-CC---C-----CHHHHHHHHHHHTT--SSEEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred H-HHHHHHHHhccceEEecCCCCC-CC---C-----CHHHHHHHHHHhCC--CceEECcCCCCCHHHHHHHHHHhhhHhc
Confidence 3 3455667899999987654311 11 1 11112333343332 6888999999999999999999999766
Q ss_pred EchH
Q 017176 235 VGRA 238 (376)
Q Consensus 235 iGRa 238 (376)
-.+|
T Consensus 203 tSs~ 206 (211)
T d1ub3a_ 203 TSSG 206 (211)
T ss_dssp ETTH
T ss_pred cCcH
Confidence 5544
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.64 E-value=0.00029 Score=62.38 Aligned_cols=162 Identities=15% Similarity=0.148 Sum_probs=91.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCC-----Ccccccc--CCHHHHHHHHHHHhcccCccEEEEec----
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHG-----CFGVSLM--LDPKFVGEAMSVIAANTNVPVSVKCR---- 142 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g-----~yG~~l~--~~~~~~~eiv~~v~~~~~~pv~vKiR---- 142 (376)
.+.+.+.+.++.+.+ |+|.|||-+ |...-.-.| ..--+|. -+.+.+.++++++|+..+.|+.+=.-
T Consensus 16 P~~~~s~~~l~~l~~-g~d~iEiGi--PfSDP~aDGpvIq~A~~rAl~~G~~~~~~~~~~~~~r~~~~~pivlm~Y~N~i 92 (248)
T d1geqa_ 16 PDKQSTLNFLLALDE-YAGAIELGI--PFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPI 92 (248)
T ss_dssp SCHHHHHHHHHHHGG-GBSCEEEEC--CCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCEEEEECHHHH
T ss_pred CCHHHHHHHHHHHHc-CCCEEEECC--CCCCccccCHHHHHhhhHHHhCCccHHHHHHHHHHHhhcCCCcEEEEeccccc
Confidence 356788888887754 999999954 332111000 0001111 25788999999999988888765321
Q ss_pred --CCCCCC----------------ccHHHHHHHHHHHhhcCCccEEEEccC-cc------------------ccCCCCCC
Q 017176 143 --IGVDDH----------------DSYNQLCDFIYKVSSLSPTRHFIIHSR-KA------------------LLNGISPA 185 (376)
Q Consensus 143 --~g~~~~----------------~~~~~~~~~i~~~~e~~Gvd~I~vh~r-~~------------------~~~g~~~~ 185 (376)
.|++.. ...+|.- .+...+.+.|++.|-+-.- +. ...|..+.
T Consensus 93 ~~~G~~~f~~~~~~~Gv~GliipDLP~eE~~-~~~~~~~~~gl~~I~lvaPtt~~~ri~~i~~~s~gFiY~vs~~GvTG~ 171 (248)
T d1geqa_ 93 YRAGVRNFLAEAKASGVDGILVVDLPVFHAK-EFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGA 171 (248)
T ss_dssp HHHCHHHHHHHHHHHTCCEEEETTCCGGGHH-HHHHHHHHHTCEEEEEECTTCCHHHHHHHHHHCSSEEEEECCC-----
T ss_pred cccCHHHHhhhhcccCeeEEeccCCcHHHHH-HHHhhccccCcceEEEecccchhHHHHHHHhcCCCeEEEEeccccccc
Confidence 111100 0011111 1223344556666554221 10 01233332
Q ss_pred CCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017176 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 186 ~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
. ...+.-..+.+.++++. .++||+.--||.|++|+.++++.+||||.+|++++.
T Consensus 172 ~-~~~~~~~~~~v~~vk~~-t~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGSaiv~ 225 (248)
T d1geqa_ 172 R-EEIPKTAYDLLRRAKRI-CRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVK 225 (248)
T ss_dssp ---CCCHHHHHHHHHHHHH-CSSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred c-hhhhhhHHHHHHHHhhh-cccceeeecccCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 1 11222124566676665 589999999999999999999999999999999863
|
| >d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.49 E-value=0.0014 Score=56.71 Aligned_cols=153 Identities=14% Similarity=0.234 Sum_probs=97.0
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHCCCCEE--EecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC
Q 017176 66 PIVLQIGGSNLDNLAKATELANAYNYDEI--NLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 143 (376)
Q Consensus 66 p~~vQL~g~~~~~~~~aa~~~~~~G~d~I--eiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~ 143 (376)
++.+.|...+...+.+..+.++++|+|.| ||.=|.-+++. .+| + +.++.+++.++.|+.|-+=.
T Consensus 3 kIspSil~~d~~~l~~~i~~~~~~g~d~iHiDimDg~Fvpn~----s~g------~----~~i~~i~~~t~~~~dvHLMv 68 (217)
T d2flia1 3 KIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNI----SFG------A----DVVASMRKHSKLVFDCHLMV 68 (217)
T ss_dssp EEEEBGGGSCGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSCB----CBC------H----HHHHHHHTTCCSEEEEEEES
T ss_pred EEEeehhhcCHHHHHHHHHHHHHcCCCEEEEEcccCcCCCcc----ccC------H----HHHHHHHhcCCCceEeEEEe
Confidence 36677888888889999999999999965 55444333321 134 2 45678888888888886554
Q ss_pred CCCCCccHHHHHHHHHHHhhcCCccEEEEccCccc----------cC---------------------------------
Q 017176 144 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL----------LN--------------------------------- 180 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~----------~~--------------------------------- 180 (376)
.+...+ + .++ .++|++.|++|..+.. ..
T Consensus 69 --~~P~~~---i---~~~-~~~ga~~i~~H~E~~~~~~~~i~~i~~~g~~~Gial~p~T~~~~~~~~l~~id~vliM~V~ 139 (217)
T d2flia1 69 --VDPERY---V---EAF-AQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVN 139 (217)
T ss_dssp --SSGGGG---H---HHH-HHHTCSEEEEEGGGCSCHHHHHHHHHHTTSEEEEEECTTSCGGGGGGGTTTCSEEEEESSC
T ss_pred --cCHHHH---H---HHH-HHcCCcEEEeccccccCHHHHHHHHHhcCCeEEEEecCCcchhHHHhHHhhcCEEEEEEEc
Confidence 232221 1 112 2468888888743210 00
Q ss_pred -CCCCCCCCCCCcccHHHHHHHH---h-hCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 181 -GISPAENRTIPPLKYEYYYALL---R-DFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 181 -g~~~~~~~~~~~~~~~~v~~~~---~-~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
|.++ ....+..++-+.+++ + ..++++|...|||+ .+.+..+.+.|||.+.+|++++.++.+
T Consensus 140 pG~~G---q~f~~~~~~ki~~l~~~~~~~~~~~~I~vDGGIn-~~~i~~l~~aGad~~V~Gsaif~~~d~ 205 (217)
T d2flia1 140 PGFGG---QAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVD-NKTIRACYEAGANVFVAGSYLFKASDL 205 (217)
T ss_dssp TTCSS---CCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCC-TTTHHHHHHHTCCEEEESHHHHTSSCH
T ss_pred Ccccc---cccchhhHHHHHHHHHHHHhcCCCeEEEEeCCCC-HHHHHHHHHCCCCEEEEchHHhCCCCH
Confidence 1111 111222244444443 2 23578999999995 678999999999999999999988875
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=97.46 E-value=0.00029 Score=62.11 Aligned_cols=138 Identities=17% Similarity=0.235 Sum_probs=84.7
Q ss_pred EEecCC--CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe----c
Q 017176 69 LQIGGS--NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC----R 142 (376)
Q Consensus 69 vQL~g~--~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi----R 142 (376)
+|+.|. +.+ .++.+-+.|+|-|-+| +.+.+++.++.++.+ ......+.+.+|- .
T Consensus 76 l~~gGGI~s~~----~~~~~~~~Ga~kVvi~---------------s~~~~~~~~~~~~~~-~~~~~~v~iD~~~~~~~~ 135 (241)
T d1qo2a_ 76 IQIGGGIRSLD----YAEKLRKLGYRRQIVS---------------SKVLEDPSFLKSLRE-IDVEPVFSLDTRGGRVAF 135 (241)
T ss_dssp EEEESSCCSHH----HHHHHHHTTCCEEEEC---------------HHHHHCTTHHHHHHT-TTCEEEEEEEEETTEECC
T ss_pred hhhhhhhhhhh----hhhhccccccceEecC---------------cccccCchhhhhhcc-cccceeeecccccccccc
Confidence 577664 333 4556667899988765 233445555444322 2111112222331 1
Q ss_pred CCCCCCc--cHHHHHHHHHHHhhcCCccEEEEccCc--cccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCC
Q 017176 143 IGVDDHD--SYNQLCDFIYKVSSLSPTRHFIIHSRK--ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 218 (376)
Q Consensus 143 ~g~~~~~--~~~~~~~~i~~~~e~~Gvd~I~vh~r~--~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s 218 (376)
-||.+.. +..+.++ .+++.|+..|.++.=. ....|. +++.+..+.+. +++|||++|||.+
T Consensus 136 ~g~~~~~~~~~~~~~~----~~~~~g~~eii~~dId~dGt~~G~-----------d~~l~~~i~~~-~~~pvi~~GGv~s 199 (241)
T d1qo2a_ 136 KGWLAEEEIDPVSLLK----RLKEYGLEEIVHTEIEKDGTLQEH-----------DFSLTKKIAIE-AEVKVLAAGGISS 199 (241)
T ss_dssp TTCSSCSCCCHHHHHH----HHHTTTCCEEEEEETTHHHHTCCC-----------CHHHHHHHHHH-HTCEEEEESSCCS
T ss_pred cCcccceeeehhHHHH----HhhccccceEEEeehhhhhhcccc-----------chhhhhhhhcc-CCceEEEECCCCC
Confidence 2444322 3444433 3457899999998533 233342 37778777665 5899999999999
Q ss_pred HHHHHHHHH------cCcCeeEEchHHhhC
Q 017176 219 VDEVNAALR------KGAHHVMVGRAAYQN 242 (376)
Q Consensus 219 ~~da~~~l~------~Gad~VmiGRa~l~~ 242 (376)
.+|+.++.+ .|+++|.+|++++.+
T Consensus 200 ~~di~~l~~ig~~~~~~~~gvivG~al~~g 229 (241)
T d1qo2a_ 200 ENSLKTAQKVHTETNGLLKGVIVGRAFLEG 229 (241)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEECHHHHTT
T ss_pred HHHHHHHHHccccccCCEeeEEEHHHHHCC
Confidence 999999876 359999999998543
|
| >d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermotoga maritima [TaxId: 2336]
Probab=97.46 E-value=0.00084 Score=59.27 Aligned_cols=137 Identities=15% Similarity=0.137 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHH
Q 017176 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLC 155 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~ 155 (376)
.+.-..-++.+.+.|+|.||+=+ .||.....+.+.+.+-++++++.+. ...+|+-+-.... +-++..
T Consensus 102 ~~~K~~Ea~~Ai~~GAdEID~Vi-----------n~~~l~~g~~~~v~~ei~~v~~~~~-~~~lKVIlEt~~L-~~~e~~ 168 (251)
T d1o0ya_ 102 TRTKAHEAIFAVESGADEIDMVI-----------NVGMLKAKEWEYVYEDIRSVVESVK-GKVVKVIIETCYL-DTEEKI 168 (251)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEC-----------CHHHHHTTCHHHHHHHHHHHHHHTT-TSEEEEECCGGGC-CHHHHH
T ss_pred HHHHHHHHHHHHHcCCceEEEEe-----------ccchhhcCCHHHHHHHHHHHHHHhc-ccceeeeeccccc-CcHHHH
Confidence 44444455667778999999832 1465566788888888888887764 3345665422211 122333
Q ss_pred HHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEE
Q 017176 156 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 235 (376)
Q Consensus 156 ~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vmi 235 (376)
+ +.+++.++|+|+|--+.+... .| + .+-....+.+... .++.|=++|||+|.+++.++++.|||-+.-
T Consensus 169 ~-a~~ia~~aGadfvKTSTGf~~-~g---a-----t~e~V~~m~~~~~--~~~giKasGGIrt~~~a~~~i~aGa~riGt 236 (251)
T d1o0ya_ 169 A-ACVISKLAGAHFVKTSTGFGT-GG---A-----TAEDVHLMKWIVG--DEMGVKASGGIRTFEDAVKMIMYGADRIGT 236 (251)
T ss_dssp H-HHHHHHHTTCSEEECCCSSSS-CC---C-----CHHHHHHHHHHHC--TTSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred H-HHHHHHHhCcceeeccCCCCC-CC---c-----CHHHHHHHHHHhC--CCceEeccCCcCCHHHHHHHHHHhhHHhCC
Confidence 3 455667899999887655321 11 1 1111223333332 268889999999999999999999997544
Q ss_pred ch
Q 017176 236 GR 237 (376)
Q Consensus 236 GR 237 (376)
.+
T Consensus 237 Ss 238 (251)
T d1o0ya_ 237 SS 238 (251)
T ss_dssp SC
T ss_pred Cc
Confidence 33
|
| >d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=97.42 E-value=0.0011 Score=57.88 Aligned_cols=138 Identities=13% Similarity=0.061 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 154 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~ 154 (376)
..+.-..-++.+.+.|+|.||+=. + +|+......+.+.++++..+. .+.++-|-+-.+.-+ -+++
T Consensus 86 ~~~~k~~E~~~Ai~~GAdEID~Vi-----n------~~~~~~~~~~ev~~~~~~~~~-~g~~lKVIlEt~~L~---~~~i 150 (234)
T d1n7ka_ 86 PLEVKLVEAQTVLEAGATELDVVP-----H------LSLGPEAVYREVSGIVKLAKS-YGAVVKVILEAPLWD---DKTL 150 (234)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEECC-----C------GGGCHHHHHHHHHHHHHHHHH-TTCEEEEECCGGGSC---HHHH
T ss_pred cHHHHHHHHHHHHHcCCCeEEEEe-----c------hhhhhhhhHHHHHHHHHHHhc-cCceEEEEEeccccc---hHHH
Confidence 344444555666677999999842 1 233223334556666665543 344443333333222 2232
Q ss_pred HHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeE
Q 017176 155 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM 234 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vm 234 (376)
..+.++..++|+|+|--+.+....++ .+.....+.+..+. .++.|=++|||+|.+|+.++++.||+-+.
T Consensus 151 -~~a~~~a~~aGadFVKTSTG~~~~ga---------t~~~~~~l~~~~~~-~~vgIKasGGIrt~~~a~~~i~aGa~rIG 219 (234)
T d1n7ka_ 151 -SLLVDSSRRAGADIVKTSTGVYTKGG---------DPVTVFRLASLAKP-LGMGVKASGGIRSGIDAVLAVGAGADIIG 219 (234)
T ss_dssp -HHHHHHHHHTTCSEEESCCSSSCCCC---------SHHHHHHHHHHHGG-GTCEEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred -HHHHHHHHHhhhhheeecccccCCCC---------CHHHHHHHHHHhcC-CCCcEEeeCCcCCHHHHHHHHHccCceee
Confidence 23445666899999886644211111 11112223333332 26889999999999999999999999655
Q ss_pred EchH
Q 017176 235 VGRA 238 (376)
Q Consensus 235 iGRa 238 (376)
-..+
T Consensus 220 tSs~ 223 (234)
T d1n7ka_ 220 TSSA 223 (234)
T ss_dssp ETTH
T ss_pred cchH
Confidence 4443
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=97.34 E-value=0.00023 Score=63.30 Aligned_cols=79 Identities=22% Similarity=0.264 Sum_probs=60.9
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.+++.|+|.|++-.-.....+ .+.+.+.+.++.+. ..+|+...|||++.++++..+..|||-|.+|+.
T Consensus 36 a~~~~~~g~dei~ivDld~~~~~---------~~~~~~~i~~i~~~-~~~pi~vgGGIr~~e~i~~~l~~Ga~kviigs~ 105 (253)
T d1thfd_ 36 GKFYSEIGIDELVFLDITASVEK---------RKTMLELVEKVAEQ-IDIPFTVGGGIHDFETASELILRGADKVSINTA 105 (253)
T ss_dssp HHHHHHTTCCEEEEEESSCSSSH---------HHHHHHHHHHHHTT-CCSCEEEESSCCSHHHHHHHHHTTCSEEEESHH
T ss_pred HHHHHHcCCCEEEEEeecccccC---------cccHHHHHHHHHhc-cCccceeecccccchhhhhHHhcCCCEEEEChH
Confidence 34556789999988432221111 11235677777776 489999999999999999999999999999999
Q ss_pred HhhCCchhh
Q 017176 239 AYQNPWYTL 247 (376)
Q Consensus 239 ~l~~P~lf~ 247 (376)
++.||.++.
T Consensus 106 ~~~n~~~l~ 114 (253)
T d1thfd_ 106 AVENPSLIT 114 (253)
T ss_dssp HHHCTHHHH
T ss_pred HhhChHHHH
Confidence 999999753
|
| >d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Putative dehydratase protein STM2273 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.32 E-value=0.0016 Score=58.40 Aligned_cols=140 Identities=14% Similarity=0.071 Sum_probs=95.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccc------cCCCCc-cccccCCHHHHHHHHHHHhccc--CccEEEEecCC
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKV------AGHGCF-GVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIG 144 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v------~r~g~y-G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g 144 (376)
.+|+++++.|+.+.+.||+.+-++.+.+.... .+...+ |....++.+.-.+.|++||+.+ ++.+.+-.--+
T Consensus 25 ~tPe~~~~~a~~~~~~Gf~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~v~aiRe~vG~~~~l~vDan~~ 104 (278)
T d2gl5a1 25 VTPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMGEARIAAMREAMGDDADIIVEIHSL 104 (278)
T ss_dssp CSHHHHHHHHHHHHHTTCSEEEECSSSBCTTSCBTTTSSCCGGGGSCCCHHHHHHHHHHHHHHHHHHCSSSEEEEECTTC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEccccCCccccccccccccccccccccHHHHHHHHHHHHHHHHHhccccceeeccccc
Confidence 57999999999999999999999877542210 001111 1122345667778889999887 45566655555
Q ss_pred CCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHH
Q 017176 145 VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNA 224 (376)
Q Consensus 145 ~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~ 224 (376)
|+ .++.+++ .+.+++.++.++- . .+++-+++..+++++.. ++||.+.-.+.+.+++.+
T Consensus 105 ~~----~~~Ai~~-~~~L~~~~l~wiE----e------------Pi~~~d~~~~~~L~~~~-~ipIa~gE~~~~~~~~~~ 162 (278)
T d2gl5a1 105 LG----TNSAIQF-AKAIEKYRIFLYE----E------------PIHPLNSDNMQKVSRST-TIPIATGERSYTRWGYRE 162 (278)
T ss_dssp SC----HHHHHHH-HHHHGGGCEEEEE----C------------SSCSSCHHHHHHHHHHC-SSCEEECTTCCTTHHHHH
T ss_pred cc----chhhHHH-HHHhcccccceec----c------------cccccchhhhhhhcccc-ccceecccccCChHHHhh
Confidence 53 3444543 4566778877665 1 12233467777887765 899999889999999999
Q ss_pred HHH-cCcCeeEE
Q 017176 225 ALR-KGAHHVMV 235 (376)
Q Consensus 225 ~l~-~Gad~Vmi 235 (376)
+++ ..+|.+++
T Consensus 163 ~i~~~a~di~~~ 174 (278)
T d2gl5a1 163 LLEKQSIAVAQP 174 (278)
T ss_dssp HHHTTCCSEECC
T ss_pred hhccccceeEee
Confidence 999 55788765
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=97.28 E-value=0.0042 Score=54.63 Aligned_cols=47 Identities=17% Similarity=0.147 Sum_probs=37.5
Q ss_pred HHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 198 YYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 198 v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
+.++.... .++.+|+.+||.+++|+..+ +.|+|+|.||.+++..|..
T Consensus 198 l~~~i~~~~~~~i~IsESGI~~~~dv~~l-~~g~davLIGesLm~~~d~ 245 (254)
T d1vc4a_ 198 LGRLARKRGFGGVLVAESGYSRKEELKAL-EGLFDAVLIGTSLMRAPDL 245 (254)
T ss_dssp HHHHHHHTTCCSEEEEESCCCSHHHHHTT-TTTCSEEEECHHHHTSSCH
T ss_pred hhhcccccCCCCEEEEccCCCCHHHHHHH-HcCCCEEEEChhhcCCCCH
Confidence 34444433 26789999999999998654 6799999999999999885
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.25 E-value=0.00029 Score=62.60 Aligned_cols=79 Identities=18% Similarity=0.221 Sum_probs=61.8
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.+++.|+|.|++---.....+ .+..++.+.++.+.. .+|+...|||++.+++++++..|||-|.+|+.
T Consensus 38 a~~~~~~gadei~ivDl~~~~~~---------~~~~~~~i~~i~~~~-~~pi~~gGGIr~~e~~~~ll~~G~~kVii~s~ 107 (252)
T d1h5ya_ 38 AVRYEEEGADEIAILDITAAPEG---------RATFIDSVKRVAEAV-SIPVLVGGGVRSLEDATTLFRAGADKVSVNTA 107 (252)
T ss_dssp HHHHHHTTCSCEEEEECCCCTTT---------HHHHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHHTCSEEEESHH
T ss_pred HHHHHHCCCCEEEEEeccccccc---------cccHHHHHHHHHhhc-CCcceeecccchhhhhhhHhhcCCcEEEeccc
Confidence 44567899999987643322111 112366778887764 99999999999999999999999999999999
Q ss_pred HhhCCchhh
Q 017176 239 AYQNPWYTL 247 (376)
Q Consensus 239 ~l~~P~lf~ 247 (376)
++.||.++.
T Consensus 108 ~~~~~~~~~ 116 (252)
T d1h5ya_ 108 AVRNPQLVA 116 (252)
T ss_dssp HHHCTHHHH
T ss_pred ccCCcchHH
Confidence 999999753
|
| >d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=97.24 E-value=0.0045 Score=53.42 Aligned_cols=153 Identities=17% Similarity=0.284 Sum_probs=94.8
Q ss_pred CCEEEEecCCCHHHHHHHHHHHHHCCCCE--EEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017176 65 HPIVLQIGGSNLDNLAKATELANAYNYDE--INLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 65 ~p~~vQL~g~~~~~~~~aa~~~~~~G~d~--IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
.++...|...+...+.+..+.+.+.|+|. |||.=|.=+++. .|| .++++.+++.++.|+.+-+=
T Consensus 2 ~kI~pSil~ad~~~l~~ei~~l~~~~~d~iHiDimDg~Fvpn~----t~~----------~~~i~~i~~~~~~~~dvHLM 67 (220)
T d1h1ya_ 2 AKIAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNL----TIG----------APVIQSLRKHTKAYLDCHLM 67 (220)
T ss_dssp CEEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCB----CBC----------HHHHHHHHTTCCSEEEEEEE
T ss_pred cEEEhhhhhcCHHHHHHHHHHHHHcCCCEEEEeeecCcccccc----ccC----------chhhhhhhhhcchhhhhHHH
Confidence 35788888889888999999999999996 455444323221 134 25566677777777666433
Q ss_pred CCCCCCcc-HHHHHHHHHHHhhcCCccEEEEc---------------------------cCccc----------------
Q 017176 143 IGVDDHDS-YNQLCDFIYKVSSLSPTRHFIIH---------------------------SRKAL---------------- 178 (376)
Q Consensus 143 ~g~~~~~~-~~~~~~~i~~~~e~~Gvd~I~vh---------------------------~r~~~---------------- 178 (376)
. .+... ++++ .++|++.|++| ..|..
T Consensus 68 v--~~p~~~i~~~--------~~~g~~~I~~H~E~~~~~~~~~i~~i~~~g~~~Glal~p~t~~~~~~~~l~~~~~~d~v 137 (220)
T d1h1ya_ 68 V--TNPSDYVEPL--------AKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELV 137 (220)
T ss_dssp S--SCGGGGHHHH--------HHHTCSEEEEEGGGCTTTHHHHHHHHHHTTCEEEEEECTTSCGGGGHHHHHSSSCCSEE
T ss_pred h--cchhhhhHHh--------hhcccceeeecccccchhHHHHHHHHHHcCCCcceeeccccchhHHHHHHhcccccceE
Confidence 2 11111 1110 12334444433 22210
Q ss_pred -----cCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 179 -----LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 179 -----~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
.-|.++ ...-+-.++-+.++++..++++|...|||+ .+.+..+.+.|||.+.+|++++.++..
T Consensus 138 lim~v~PG~~G---Q~f~~~~l~kI~~l~~~~~~~~I~VDGGIn-~~~i~~l~~aGad~~V~GS~if~~~d~ 205 (220)
T d1h1ya_ 138 LVMTVEPGFGG---QKFMPEMMEKVRALRKKYPSLDIEVDGGLG-PSTIDVAASAGANCIVAGSSIFGAAEP 205 (220)
T ss_dssp EEESSCTTCSS---CCCCGGGHHHHHHHHHHCTTSEEEEESSCS-TTTHHHHHHHTCCEEEESHHHHTSSCH
T ss_pred EEEecCCCCcc---cccchhhhHHHHHHHhcCCCceEEEEecCC-HHHHHHHHHCCCCEEEECHHHHCCCCH
Confidence 002111 111222367778888778899999999995 568888888999999999999988874
|
| >d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]
Probab=97.20 E-value=0.0003 Score=60.43 Aligned_cols=75 Identities=13% Similarity=0.065 Sum_probs=57.3
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
.+.|+|++.+..-...... ...++..++.+.++++.. ++||++-||| +.+++.+++++|||+|.+.++++..
T Consensus 116 ~~~g~DYi~~gpvf~T~tk------~~~~~~g~~~l~~~~~~~-~~Pv~AiGGI-~~~ni~~~~~~Ga~gvAvis~I~~~ 187 (206)
T d1xi3a_ 116 EKKGADYLGAGSVFPTKTK------EDARVIGLEGLRKIVESV-KIPVVAIGGI-NKDNAREVLKTGVDGIAVISAVMGA 187 (206)
T ss_dssp HHHTCSEEEEECSSCC----------CCCCCHHHHHHHHHHHC-SSCEEEESSC-CTTTHHHHHTTTCSEEEESHHHHTS
T ss_pred HhcCCCEEEeccccccccc------cccccccHHHHHHHHHhc-CCCEEEECCC-CHHHHHHHHHhCCCEEEEhHHHHCC
Confidence 3579999999864321110 112455688888888765 8999999999 8888999999999999999999987
Q ss_pred Cch
Q 017176 243 PWY 245 (376)
Q Consensus 243 P~l 245 (376)
++.
T Consensus 188 ~dp 190 (206)
T d1xi3a_ 188 EDV 190 (206)
T ss_dssp SSH
T ss_pred CCH
Confidence 663
|
| >d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=97.13 E-value=0.014 Score=50.50 Aligned_cols=162 Identities=15% Similarity=0.201 Sum_probs=99.1
Q ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHHCCCCE--EEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEE
Q 017176 62 PEQHPIVLQIGGSNLDNLAKATELANAYNYDE--INLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSV 139 (376)
Q Consensus 62 ~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~--IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~v 139 (376)
..+-.+...|...+...+.+..+.+.++|+|. |||-=|.-+++. .|| -++++.+++.+++|+.+
T Consensus 8 ~~~~~IspSIl~~d~~~l~~~i~~l~~~g~d~iHiDImDG~Fvpn~----t~~----------~~~v~~i~~~t~~~~dv 73 (230)
T d1rpxa_ 8 KSDIIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNI----TIG----------PLVVDSLRPITDLPLDV 73 (230)
T ss_dssp TTSCEEEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCB----CCC----------HHHHHHHGGGCCSCEEE
T ss_pred cCCeEEEcchhhcCHHHHHHHHHHHHHcCCCEEEEeCccCCcCCcc----ccC----------hHHHhhhhhccCceeee
Confidence 34556888999999999999999999999885 455444322221 134 24667777777777776
Q ss_pred EecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCcc-------------cc---------------------------
Q 017176 140 KCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-------------LL--------------------------- 179 (376)
Q Consensus 140 KiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~-------------~~--------------------------- 179 (376)
-+=. .+ ....+ ..+ .++|++.|++|.-.. ..
T Consensus 74 HLMv--~~---P~~~i---~~~-~~~g~~~i~~H~E~~~~~~~~~~i~~ik~~g~k~Gialnp~T~~~~l~~~l~~vD~V 144 (230)
T d1rpxa_ 74 HLMI--VE---PDQRV---PDF-IKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDLV 144 (230)
T ss_dssp EEES--SS---HHHHH---HHH-HHTTCSEEEEECSTTTCSCHHHHHHHHHHTTSEEEEEECTTCCGGGGTTTTTTCSEE
T ss_pred eeee--cc---hhhhH---HHH-hhcccceeEEeccccccccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHhhCCEE
Confidence 5443 22 11222 112 246777777774210 00
Q ss_pred ------CCCCCCCCCCCCcccHHHHHHH---Hh-hCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchhhHh
Q 017176 180 ------NGISPAENRTIPPLKYEYYYAL---LR-DFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGH 249 (376)
Q Consensus 180 ------~g~~~~~~~~~~~~~~~~v~~~---~~-~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~ 249 (376)
.|.++ ...-+..++-+.++ .+ ..+++.|...||| +.+.+..+.+.|||.+.+|++++.++.+ .+.
T Consensus 145 llM~V~PGf~G---Q~f~~~~~~kI~~~~~~~~~~~~~~~I~vDGGI-n~~~i~~l~~~Gad~~V~GS~if~~~d~-~~~ 219 (230)
T d1rpxa_ 145 LIMSVNPGFGG---QSFIESQVKKISDLRKICAERGLNPWIEVDGGV-GPKNAYKVIEAGANALVAGSAVFGAPDY-AEA 219 (230)
T ss_dssp EEESSCTTCSS---CCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSC-CTTTHHHHHHHTCCEEEESHHHHTSSCH-HHH
T ss_pred EEEEecCCccc---chhhhhhHHHHHHHHHHHHhcCCceEEEEECCc-CHHHHHHHHHcCCCEEEEChHHHCCCCH-HHH
Confidence 01111 11111123444443 22 2357889999999 4568888888999999999999999885 444
Q ss_pred hh
Q 017176 250 VD 251 (376)
Q Consensus 250 ~~ 251 (376)
+.
T Consensus 220 i~ 221 (230)
T d1rpxa_ 220 IK 221 (230)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermotoga maritima [TaxId: 2336]
Probab=97.10 E-value=0.002 Score=56.70 Aligned_cols=149 Identities=19% Similarity=0.226 Sum_probs=84.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC-----------
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI----------- 143 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~----------- 143 (376)
+|.++++ .. +.|+++|-+.. ....|||++. -+..+++.+++||..|==+
T Consensus 62 d~~~~a~---~y-e~GA~aiSVLT--------d~~~F~Gs~~--------~l~~vr~~~~~PiLrKDFIid~~QI~ea~~ 121 (251)
T d1i4na_ 62 SLEDFIR---MY-DELADAISILT--------EKHYFKGDPA--------FVRAARNLTCRPILAKDFYIDTVQVKLASS 121 (251)
T ss_dssp CHHHHHH---HH-HHHCSEEEEEC--------CCSSSCCCTH--------HHHHHHTTCCSCEEEECCCCSTHHHHHHHH
T ss_pred cHHHHHH---HH-hcCCcceEEec--------ccCCCCCCHH--------HHHHHhhcccCchhhhhhhhCHHHHHHHHh
Confidence 4555543 33 34889998752 2334677653 2567788889999888221
Q ss_pred -CCCCC------ccHHHHHHHHHHHhhcCCccEEE-EccCccc-----cCCC--CCCCCCCCCc--ccHHHHHHHHhhCC
Q 017176 144 -GVDDH------DSYNQLCDFIYKVSSLSPTRHFI-IHSRKAL-----LNGI--SPAENRTIPP--LKYEYYYALLRDFP 206 (376)
Q Consensus 144 -g~~~~------~~~~~~~~~i~~~~e~~Gvd~I~-vh~r~~~-----~~g~--~~~~~~~~~~--~~~~~v~~~~~~~~ 206 (376)
|-|-. -+-+++..+ ...+...|.+.+. ||...-. ..+. -+-+++.... .+.....++....|
T Consensus 122 ~GADaiLLI~~~L~~~~l~~l-~~~a~~lgle~LvEvh~~~El~~al~~~~a~iiGINnRdL~t~~vd~~~~~~L~~~ip 200 (251)
T d1i4na_ 122 VGADAILIIARILTAEQIKEI-YEAAEELGMDSLVEVHSREDLEKVFSVIRPKIIGINTRDLDTFEIKKNVLWELLPLVP 200 (251)
T ss_dssp TTCSEEEEEGGGSCHHHHHHH-HHHHHTTTCEEEEEECSHHHHHHHHTTCCCSEEEEECBCTTTCCBCTTHHHHHGGGSC
T ss_pred hccceEEeecccccHHHHHHH-HHHHHHhCCeeecccCCHHHHHHHhcccccceeeeeecchhccchhhhHHHHHHhhCC
Confidence 11110 011122222 2233456666543 5644210 1110 0112222222 22334455555555
Q ss_pred -CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 207 -DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 207 -~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
+..+|+-+||.+++|+..+ +.|+|+|.||.+++..+..
T Consensus 201 ~~~~~IaESGI~~~~d~~~l-~~G~davLIG~sLm~~~~p 239 (251)
T d1i4na_ 201 DDTVVVAESGIKDPRELKDL-RGKVNAVLVGTSIMKAENP 239 (251)
T ss_dssp TTSEEEEESCCCCGGGHHHH-TTTCSEEEECHHHHHCSSH
T ss_pred CCCEEEEcCCCCCHHHHHHH-HhCCCEEEEChHHhCCCCH
Confidence 6889999999999999765 6799999999999987663
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=97.08 E-value=0.00042 Score=61.43 Aligned_cols=79 Identities=15% Similarity=0.211 Sum_probs=61.3
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.+++.|+|.|++-.-.....+ ....++.+.++.+.. .+|+...|||+|.+++++++..||+-|.+|+.
T Consensus 36 a~~~~~~g~dei~iiDl~~~~~~---------~~~~~~~i~~i~~~~-~~pi~vgGGIrs~e~~~~ll~~Ga~kVii~s~ 105 (251)
T d1ka9f_ 36 ARAYDEAGADELVFLDISATHEE---------RAILLDVVARVAERV-FIPLTVGGGVRSLEDARKLLLSGADKVSVNSA 105 (251)
T ss_dssp HHHHHHHTCSCEEEEECCSSTTC---------HHHHHHHHHHHHTTC-CSCEEEESSCCSHHHHHHHHHHTCSEEEECHH
T ss_pred HHHHHHcCCCEEEEEeccccccc---------chhHHHHHHHHHhcc-CcchheeccccCHHHHHHHHHcCCCEEEECch
Confidence 34556789999988643221111 012366778888765 89999999999999999999999999999999
Q ss_pred HhhCCchhh
Q 017176 239 AYQNPWYTL 247 (376)
Q Consensus 239 ~l~~P~lf~ 247 (376)
++.||.++.
T Consensus 106 ~~~n~~~i~ 114 (251)
T d1ka9f_ 106 AVRRPELIR 114 (251)
T ss_dssp HHHCTHHHH
T ss_pred hhhCHHHHH
Confidence 999999853
|
| >d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.05 E-value=0.011 Score=51.75 Aligned_cols=134 Identities=9% Similarity=0.042 Sum_probs=93.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC--ccEEEEecCCCCCCccH
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVDDHDSY 151 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~--~pv~vKiR~g~~~~~~~ 151 (376)
.+|+++++.|+.+.+.||..+-+..|.|... ++ .+++.-.+.|++||+.++ +.+.|-.--+|+ .
T Consensus 22 ~tpe~~~~~a~~~~~~Gf~~~Kik~g~~~~~------~~----~~~~~d~~~v~avR~~~G~~~~l~vDaN~~~~----~ 87 (255)
T d1rvka1 22 ATPEDYGRFAETLVKRGYKGIKLHTWMPPVS------WA----PDVKMDLKACAAVREAVGPDIRLMIDAFHWYS----R 87 (255)
T ss_dssp SSHHHHHHHHHHHHHHTCSEEEEECCCTTST------TC----CCHHHHHHHHHHHHHHHCTTSEEEEECCTTCC----H
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCccc------cc----cCHHHHHHHHHHHHHHcCCccceecccccccc----c
Confidence 4699999999999888999999998866431 12 457777888888988763 455555554553 4
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHH-HHHHHHH-cC
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVD-EVNAALR-KG 229 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~-da~~~l~-~G 229 (376)
++.+++ .+.+++.++.+|- . .+++.+++.++++++.. ++||.+...+.+.. +...+++ ..
T Consensus 88 ~~A~~~-~~~l~~~~l~~iE----e------------P~~~~d~~~~~~l~~~~-~~pI~~~E~~~~~~~~~~~~i~~~~ 149 (255)
T d1rvka1 88 TDALAL-GRGLEKLGFDWIE----E------------PMDEQSLSSYKWLSDNL-DIPVVGPESAAGKHWHRAEWIKAGA 149 (255)
T ss_dssp HHHHHH-HHHHHTTTCSEEE----C------------CSCTTCHHHHHHHHHHC-SSCEEECSSCSSHHHHHHHHHHTTC
T ss_pred chhhhh-hhhcccchhhhhc----C------------CcccccHHHHHHHHHhc-ccceeehhhcccchhhhhhhhhhch
Confidence 455554 3455778888776 1 12223466777887765 89999998998875 6678887 66
Q ss_pred cCeeEEchHH
Q 017176 230 AHHVMVGRAA 239 (376)
Q Consensus 230 ad~VmiGRa~ 239 (376)
+|.+++--+-
T Consensus 150 ~dii~~d~~~ 159 (255)
T d1rvka1 150 CDILRTGVND 159 (255)
T ss_dssp CSEEEECHHH
T ss_pred hhhccccccc
Confidence 8888874443
|
| >d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Thermus thermophilus [TaxId: 274]
Probab=97.02 E-value=0.0028 Score=56.48 Aligned_cols=161 Identities=13% Similarity=0.116 Sum_probs=86.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCC-----Ccccccc--CCHHHHHHHHHHHhcccCccEEEEecCCCC
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHG-----CFGVSLM--LDPKFVGEAMSVIAANTNVPVSVKCRIGVD 146 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g-----~yG~~l~--~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~ 146 (376)
.+.+.+.++++.+.+ |+|.|||-+ |...-.-.| ..--+|. -+.+.+.++++.+|+..+.|+.+=.-.+.-
T Consensus 27 P~~~~~~~~l~~l~~-gaDiiElGi--PfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~~r~~~~~pivlm~Y~N~i 103 (271)
T d1ujpa_ 27 PSREGFLQAVEEVLP-YADLLEIGL--PYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPV 103 (271)
T ss_dssp SCHHHHHHHHHHHGG-GCSSEEEEC--CCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEEECCHHHH
T ss_pred CCHHHHHHHHHHHHc-CCCEEEeCC--CCCCcccCCCeeeeeeeeccccccchhhHHHHHHHHhcccCCcEEEEeechhh
Confidence 356788888887766 999999964 322101000 0001111 367889999999998888887663221000
Q ss_pred CCccHHHHHH---------------------HHHHHhhcCCccEEEE-ccCcc------------------ccCCCCCCC
Q 017176 147 DHDSYNQLCD---------------------FIYKVSSLSPTRHFII-HSRKA------------------LLNGISPAE 186 (376)
Q Consensus 147 ~~~~~~~~~~---------------------~i~~~~e~~Gvd~I~v-h~r~~------------------~~~g~~~~~ 186 (376)
....++++++ .+...+.+.|++.|-+ ...|. ...|..+..
T Consensus 104 ~~~G~~~F~~~~~~aGvdGliipDLP~ee~~~~~~~~~~~gl~~I~lvsPtT~~eRi~~i~~~s~GFIY~Vs~~GvTG~~ 183 (271)
T d1ujpa_ 104 LAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATGFVYAVSVTGVTGMR 183 (271)
T ss_dssp HHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEECEECTTCCHHHHHHHHTTCCSCEEEECC-------
T ss_pred hhCCchhHhHHHhhcCceeEeccchhhhhHHHHHHHhhccccceeeccCCCcchHHHHHHHHhCcchhhhhcccCccCcc
Confidence 0000111111 1122334455655543 22110 011322322
Q ss_pred CCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017176 187 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 187 ~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
. ..+....+.+..+++ +.++||..-=||.+++++..+ .+||||.||++++.
T Consensus 184 ~-~~~~~~~~~i~~ik~-~t~~Pv~vGFGIs~~e~v~~~--~~ADGvIVGSAiV~ 234 (271)
T d1ujpa_ 184 E-RLPEEVKDLVRRIKA-RTALPVAVGFGVSGKATAAQA--AVADGVVVGSALVR 234 (271)
T ss_dssp ------CCHHHHHHHHT-TCCSCEEEESCCCSHHHHHHH--TTSSEEEECHHHHH
T ss_pred c-cchHHHHHHHHhhhc-cccCCeEEeCCCCCHHHHHHh--CCCCEEEEcHHHHH
Confidence 1 122222456666654 569999988899999999764 48999999999864
|
| >d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Escherichia coli [TaxId: 562]
Probab=96.95 E-value=0.0065 Score=53.35 Aligned_cols=145 Identities=15% Similarity=0.126 Sum_probs=80.6
Q ss_pred HHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC------------CCCC--
Q 017176 82 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI------------GVDD-- 147 (376)
Q Consensus 82 aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~------------g~~~-- 147 (376)
+++ ..+.|+++|-+.. ....|||++. -++.+++.+++|+--|==+ |-|-
T Consensus 73 ~a~-~~~~gA~aiSVLT--------e~~~F~Gs~~--------~l~~v~~~~~~PiLrKDFIid~~QI~ear~~GADavL 135 (254)
T d1piia2 73 IAA-IYKHYASAISVLT--------DEKYFQGSFN--------FLPIVSQIAPQPILCKDFIIDPYQIYLARYYQADACL 135 (254)
T ss_dssp HHH-HHTTTCSEEEEEC--------CSTTTCCCTT--------HHHHHHHHCCSCEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred HHH-HHHhccCceEEec--------ccccCCCCHH--------HHHHHHhccccccchhcccCcHHHHHHHHhhccchhh
Confidence 455 4467999998853 2345777664 2455677788998877211 1110
Q ss_pred ----CccHHHHHHHHHHHhhcCCccEE-EEccCccc----cCC--CCCCCCCCCCc--ccHHHHHHHHhhCC-CCeEEEe
Q 017176 148 ----HDSYNQLCDFIYKVSSLSPTRHF-IIHSRKAL----LNG--ISPAENRTIPP--LKYEYYYALLRDFP-DLTFTLN 213 (376)
Q Consensus 148 ----~~~~~~~~~~i~~~~e~~Gvd~I-~vh~r~~~----~~g--~~~~~~~~~~~--~~~~~v~~~~~~~~-~ipVi~n 213 (376)
.-+-+++.++ ...+.+.|.+.+ .||..... .-| .-+-+++.... .+.....++....| ++.+|+-
T Consensus 136 LI~~~L~~~~l~~l-~~~a~~lgl~~LVEvh~~~El~~a~~~~a~iIGINnRnL~tf~vd~~~t~~L~~~ip~~~~~VsE 214 (254)
T d1piia2 136 LMLSVLDDDQYRQL-AAVAHSLEMGVLTEVSNEEEQERAIALGAKVVGINNRDLRDLSIDLNRTRELAPKLGHNVTVISE 214 (254)
T ss_dssp EETTTCCHHHHHHH-HHHHHHTTCEEEEEECSHHHHHHHHHTTCSEEEEESEETTTTEECTHHHHHHHHHHCTTSEEEEE
T ss_pred hhHhhhcccHHHHH-HHHHHHHhhhHHHhhccHHHHHHHHhhcccccCccccchhhhhhhhHHHHHHHHhCCCCCEEEEc
Confidence 0011112111 223345666554 35643210 000 00112222222 22333344444444 6789999
Q ss_pred cCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 214 GGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 214 GgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
+||.+++|+..+ ..|+|+|.||.+++..|..
T Consensus 215 SGI~~~~d~~~l-~~g~davLiGeslm~~~dp 245 (254)
T d1piia2 215 SGINTYAQVREL-SHFANGFLIGSALMAHDDL 245 (254)
T ss_dssp SCCCCHHHHHHH-TTTCSEEEECHHHHTCSCH
T ss_pred CCCCCHHHHHHH-HcCCCEEEEChHHhCCCCH
Confidence 999999999775 6799999999999998874
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=96.95 E-value=0.00058 Score=62.67 Aligned_cols=81 Identities=14% Similarity=0.089 Sum_probs=57.2
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHH-----------HHHHHH
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE-----------VNAALR 227 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~d-----------a~~~l~ 227 (376)
++.+++.|+|.|++--=.+...+.. .....++.+.++.++. .+||..-|||+|.+| |.++++
T Consensus 54 a~~~~~~gaDeL~ivDidas~~~~~------~~~~~~~~I~~i~~~~-~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll~ 126 (323)
T d1jvna1 54 AQKYYQQGADEVTFLNITSFRDCPL------KDTPMLEVLKQAAKTV-FVPLTVGGGIKDIVDVDGTKIPALEVASLYFR 126 (323)
T ss_dssp HHHHHHTTCSEEEEEEEC---CCCG------GGCHHHHHHHHHTTTC-CSCEEEESSCSCEECTTCCEECHHHHHHHHHH
T ss_pred HHHHHHCCCCEEEEEECcCCCCCcC------CCchHHHHHHhhcccc-ceeEEEecCcccHHHhhhccchhhHHHHHHHH
Confidence 4566789999999742111111110 0012367788887764 899999999999654 678889
Q ss_pred cCcCeeEEchHHhhCCchh
Q 017176 228 KGAHHVMVGRAAYQNPWYT 246 (376)
Q Consensus 228 ~Gad~VmiGRa~l~~P~lf 246 (376)
.|||=|.||++++.||.++
T Consensus 127 ~GadKVvI~T~ai~~p~~~ 145 (323)
T d1jvna1 127 SGADKVSIGTDAVYAAEKY 145 (323)
T ss_dssp HTCSEEEECHHHHHHHHHH
T ss_pred cCCCeEEechHHhhChHHH
Confidence 9999999999999877753
|
| >d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Probab=96.91 E-value=0.014 Score=50.79 Aligned_cols=136 Identities=10% Similarity=0.098 Sum_probs=93.4
Q ss_pred CEEEEecC-CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEec
Q 017176 66 PIVLQIGG-SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCR 142 (376)
Q Consensus 66 p~~vQL~g-~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR 142 (376)
|+..-+.. ..++++.++++.+.+.||+.+-+..|- .+++.=.+.|+++++.+ +..+.+-.-
T Consensus 7 P~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~~D~~~v~~ir~~~g~~~~l~vDaN 70 (244)
T d2chra1 7 PIAWTLASGDTKRDLDSAVEMIERRRHNRFKVKLGF----------------RSPQDDLIHMEALSNSLGSKAYLRVDVN 70 (244)
T ss_dssp EBEEEECSSCHHHHHHHHHHHHHTTSCCEEEEECSS----------------SCHHHHHHHHHHHHHHTTTTSEEEEECT
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHhCCCCEEEEEcCC----------------CCHHHHHHHHHHHHHhcCCCceEEEeCC
Confidence 55555544 446778888899999999999885432 13444456778888876 456666666
Q ss_pred CCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHH
Q 017176 143 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 222 (376)
Q Consensus 143 ~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da 222 (376)
-+|+. ++.++++ +.+++.++.++- ..+++-+++.++++++.. ++||.+.-.+.+.+++
T Consensus 71 ~~~~~----~~A~~~~-~~l~~~~i~~iE----------------eP~~~~d~~~~~~l~~~~-~ipia~~E~~~~~~~~ 128 (244)
T d2chra1 71 QAWDE----QVASVYI-PELEALGVELIE----------------QPVGRENTQALRRLSDNN-RVAIMADESLSTLASA 128 (244)
T ss_dssp TCCCT----HHHHHHH-HHHHTTTCCEEE----------------CCSCSSCHHHHHHHHHHC-SSEEEESSSCCSHHHH
T ss_pred CCcch----HHHHHHH-HHHhhhhHHHHh----------------hhhhhccchhhhhhccce-eeeeeecccccccchh
Confidence 66653 3444443 445678887655 112233467777887775 8999999999999999
Q ss_pred HHHHH-cCcCeeEEchHH
Q 017176 223 NAALR-KGAHHVMVGRAA 239 (376)
Q Consensus 223 ~~~l~-~Gad~VmiGRa~ 239 (376)
.++++ ..+|.|++--.-
T Consensus 129 ~~~i~~~~~d~v~~d~~~ 146 (244)
T d2chra1 129 FDLARDRSVDVFSLKLCN 146 (244)
T ss_dssp HHHHTTTCCSEECCCHHH
T ss_pred hhhhhcceeEEEeecccc
Confidence 99998 558998874433
|
| >d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Bacillus subtilis [TaxId: 1423]
Probab=96.90 E-value=0.00099 Score=58.02 Aligned_cols=77 Identities=17% Similarity=0.018 Sum_probs=55.0
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
.+.|+|++.+..-...... . ...++..++.+..+.+...++||++-||| +.+++.+++++|||+|.+.++++..
T Consensus 132 ~~~g~DYi~~gpvf~T~sK---~--~~~~~~~~~~~~~~~~~~~~~Pv~AiGGI-~~~ni~~l~~~Ga~giAvis~I~~a 205 (226)
T d2tpsa_ 132 EEDGADYVGLGPIYPTETK---K--DTRAVQGVSLIEAVRRQGISIPIVGIGGI-TIDNAAPVIQAGADGVSMISAISQA 205 (226)
T ss_dssp HHHTCSEEEECCSSCCCSS---S--SCCCCCTTHHHHHHHHTTCCCCEEEESSC-CTTTSHHHHHTTCSEEEESHHHHTS
T ss_pred HhCcCCeEEEecccccccc---c--ccccccccchhHHHHHhcCCCCEEEecCC-CHHHHHHHHHhCCCEEEEhHHhhcC
Confidence 3579999998764221110 0 11122335556666555568999999999 8899999999999999999999987
Q ss_pred Cch
Q 017176 243 PWY 245 (376)
Q Consensus 243 P~l 245 (376)
++.
T Consensus 206 ~dp 208 (226)
T d2tpsa_ 206 EDP 208 (226)
T ss_dssp SCH
T ss_pred CCH
Confidence 763
|
| >d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Escherichia coli [TaxId: 562]
Probab=96.84 E-value=0.0011 Score=58.45 Aligned_cols=148 Identities=16% Similarity=0.151 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQ 153 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~ 153 (376)
..+.-..-++.+.+.|+|.||+=. .||.-...+.+.+.+-++++++.+ ..++.+|+-+-..... -++
T Consensus 82 ~~e~K~~E~~~Ai~~GAdEID~Vi-----------n~~~l~~g~~~~v~~ei~~v~~~~~~~~~~lKVIlEt~~Lt-d~e 149 (250)
T d1p1xa_ 82 DIDIALAETRAAIAYGADEVDVVF-----------PYRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELK-DEA 149 (250)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEC-----------CHHHHHTTCCHHHHHHHHHHHHHHHHTTCEEEEECCHHHHC-SHH
T ss_pred cHhHHHHHHHHHHHcCCCeEEEee-----------cchhhccccHHHHHHHHHHHHHhhccCCceEEEEEeccccC-cHH
Confidence 345555566667778999999832 134444455677777777777654 2345566554211100 123
Q ss_pred HHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC---CCCeEEEecCCCCHHHHHHHHHcCc
Q 017176 154 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF---PDLTFTLNGGINTVDEVNAALRKGA 230 (376)
Q Consensus 154 ~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~---~~ipVi~nGgI~s~~da~~~l~~Ga 230 (376)
.++...+++.++|+|+|--+.+... .| + .+-....+.+.++.. .++.|=++|||+|.+++.++++.|+
T Consensus 150 ~i~~a~~ia~~aGadFvKTSTG~~~-~g---a-----t~~~v~~m~~~i~~~~~~~~vgIKasGGIrt~~~a~~~i~~ga 220 (250)
T d1p1xa_ 150 LIRKASEISIKAGADFIKTSTGKVA-VN---A-----TPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAIAD 220 (250)
T ss_dssp HHHHHHHHHHHTTCSEEECCCSCSS-CC---C-----CHHHHHHHHHHHHHHTCTTTCEEECBSSCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcCeEEecCCcCC-CC---C-----CHHHHHHHHHHhhhhccCcceeeEecCCCCCHHHHHHHHHHHH
Confidence 3333345667899999887654321 11 1 111233344444331 2688999999999999999999777
Q ss_pred CeeEEchHHhhCCchh
Q 017176 231 HHVMVGRAAYQNPWYT 246 (376)
Q Consensus 231 d~VmiGRa~l~~P~lf 246 (376)
+-+ |-..+ +|..|
T Consensus 221 ~~i--G~~~~-~~~~f 233 (250)
T d1p1xa_ 221 ELF--GADWA-DARHY 233 (250)
T ss_dssp HHH--CTTSC-STTTB
T ss_pred HHh--Ccccc-ccCce
Confidence 643 33332 67775
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=96.82 E-value=0.0014 Score=57.41 Aligned_cols=78 Identities=22% Similarity=0.252 Sum_probs=60.8
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.+.+.|++.|+|--=.+...+ ..+...+..+.+.. .+||..-|||++.++++++++.|||-|.+++.
T Consensus 37 a~~~~~~ga~~l~i~DLd~~~~~----------~~~~~~i~~i~~~~-~~pi~vGGGIrs~~~~~~ll~~Ga~kVvi~s~ 105 (239)
T d1vzwa1 37 ALAWQRSGAEWLHLVDLDAAFGT----------GDNRALIAEVAQAM-DIKVELSGGIRDDDTLAAALATGCTRVNLGTA 105 (239)
T ss_dssp HHHHHHTTCSEEEEEEHHHHHTS----------CCCHHHHHHHHHHC-SSEEEEESSCCSHHHHHHHHHTTCSEEEECHH
T ss_pred HHHHHHcCCCEEEEEeecccccc----------cchHHHHHHHHhhc-CcceEeecccccchhhhhhhccccccchhhHH
Confidence 34456789999987532211111 11267778888776 89999999999999999999999999999999
Q ss_pred HhhCCchhh
Q 017176 239 AYQNPWYTL 247 (376)
Q Consensus 239 ~l~~P~lf~ 247 (376)
++.||.++.
T Consensus 106 ~~~~~~~~~ 114 (239)
T d1vzwa1 106 ALETPEWVA 114 (239)
T ss_dssp HHHCHHHHH
T ss_pred hhhccccch
Confidence 999999863
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=96.76 E-value=0.012 Score=50.33 Aligned_cols=153 Identities=14% Similarity=0.066 Sum_probs=92.2
Q ss_pred CCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCcc-----c---cCCCCccccccCCHHHHHHHHHHHhcccCcc
Q 017176 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPK-----V---AGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 136 (376)
Q Consensus 65 ~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~-----v---~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~p 136 (376)
.+++.=|.+.++++..+.++.+.+.|+..|||.+-.|... . ...-..|+.-.-+++.+.+.+++ +..
T Consensus 14 ~~iipvlr~~~~~~~~~~~~al~~~Gi~~iEitl~~~~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~a-----Ga~ 88 (212)
T d1vhca_ 14 LKIVPVIALDNADDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSS-----GAD 88 (212)
T ss_dssp HCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHH-----TCS
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHhcCCCceEeeeecccHHHHHHHHhh-----CCc
Confidence 4577777888999999999999999999999987655310 0 00011233333444444443333 112
Q ss_pred EEEEecCCCCCC----------------ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHH
Q 017176 137 VSVKCRIGVDDH----------------DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA 200 (376)
Q Consensus 137 v~vKiR~g~~~~----------------~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~ 200 (376)
+.| +++++.. .+..|+.. . .++|++.+-+.+-... . ...+++.
T Consensus 89 Fiv--SP~~~~~v~~~a~~~~i~~iPGv~TpsEi~~----A-~~~G~~~vK~FPA~~~-g-------------G~~~lka 147 (212)
T d1vhca_ 89 FVV--TPGLNPKIVKLCQDLNFPITPGVNNPMAIEI----A-LEMGISAVKFFPAEAS-G-------------GVKMIKA 147 (212)
T ss_dssp EEE--CSSCCHHHHHHHHHTTCCEECEECSHHHHHH----H-HHTTCCEEEETTTTTT-T-------------HHHHHHH
T ss_pred EEE--CCCCCHHHHHHHHhcCCCccCCcCCHHHHHH----H-HHCCCCEEEEcccccc-c-------------hHHHHHH
Confidence 222 2222210 11222211 1 2466666665543210 0 1456777
Q ss_pred HHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017176 201 LLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 201 ~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
+..-+++++++..||| +.+++.+.++.|+.++.+|+.+..+-+
T Consensus 148 l~~p~p~~~~~ptGGV-~~~N~~~yl~~g~v~~~~Gs~l~~~~~ 190 (212)
T d1vhca_ 148 LLGPYAQLQIMPTGGI-GLHNIRDYLAIPNIVACGGSWFVEKKL 190 (212)
T ss_dssp HHTTTTTCEEEEBSSC-CTTTHHHHHTSTTBCCEEECGGGCHHH
T ss_pred HhccccCCeEEecCCC-CHHHHHHHHhCCCEEEEEChhhCCHHH
Confidence 7777889999999999 568999999999999999987754433
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=96.75 E-value=0.0084 Score=51.34 Aligned_cols=155 Identities=15% Similarity=0.145 Sum_probs=96.3
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCcc--------ccCCCCccccccCCHHHHHHHHHHHhcccCc
Q 017176 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPK--------VAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~--------v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~ 135 (376)
..|++.=|.+.++++....++.+.+.|+..|||.+-.|... -...-..|+.-..+++.+...+++ +.
T Consensus 14 ~~~iipvlr~~~~~~a~~~~~al~~~Gi~~iEitl~tp~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~a-----Ga 88 (213)
T d1wbha1 14 TGPVVPVIVVKKLEHAVPMAKALVAGGVRVLNVTLRTECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEA-----GA 88 (213)
T ss_dssp SCSEEEEECCSSGGGHHHHHHHHHHTTCCEEEEESCSTTHHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHH-----TC
T ss_pred hCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCeeeccccccHHHHHHHHHC-----CC
Confidence 45788888899999999999999999999999988666320 000112344444455555444433 11
Q ss_pred cEEEEecCCCCCC----------------ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHH
Q 017176 136 PVSVKCRIGVDDH----------------DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 199 (376)
Q Consensus 136 pv~vKiR~g~~~~----------------~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~ 199 (376)
.+.| +++++.. .+..|+.. . .++|++.+-+.+-... | ...++.
T Consensus 89 ~Fiv--SP~~~~~v~~~a~~~~i~~iPGv~TpsEi~~----A-~~~G~~~vKlFPA~~~--G------------g~~~lk 147 (213)
T d1wbha1 89 QFAI--SPGLTEPLLKAATEGTIPLIPGISTVSELML----G-MDYGLKEFKFFPAEAN--G------------GVKALQ 147 (213)
T ss_dssp SCEE--ESSCCHHHHHHHHHSSSCEEEEESSHHHHHH----H-HHTTCCEEEETTTTTT--T------------HHHHHH
T ss_pred cEEE--CCCCCHHHHHHHHhcCCCccCCcCCHHHHHH----H-HHCCCCEEEeccchhc--C------------hHHHHH
Confidence 1221 2222210 11222211 1 2466666665543210 0 145677
Q ss_pred HHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 200 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 200 ~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
.+..-+++++++..|||. .+++.+.++.|+.++.+|+.+..+.++
T Consensus 148 al~~p~p~~~~~ptGGV~-~~n~~~yl~~g~v~~~~Gs~l~~~~~i 192 (213)
T d1wbha1 148 AIAGPFSQVRFCPTGGIS-PANYRDYLALKSVLCIGGSWLVPADAL 192 (213)
T ss_dssp HHHTTCTTCEEEEBSSCC-TTTHHHHHTSTTBSCEEEGGGSCHHHH
T ss_pred HhcCcccCCceeeeCCCC-HHHHHHHHhCCCEEEEEChhhCChhhh
Confidence 777778899999999995 689999999999999999877655444
|
| >d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=96.66 E-value=0.0077 Score=51.91 Aligned_cols=51 Identities=16% Similarity=0.167 Sum_probs=42.0
Q ss_pred HHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchhhHhhh
Q 017176 200 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 251 (376)
Q Consensus 200 ~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~ 251 (376)
.+.+..+++||++-|+|.+.+++..+++.|+|||.||+|.+.-+.+ .+.++
T Consensus 168 ~i~~~~~~v~vlygGsV~~~n~~~~~~~~g~dGvLVGsAsl~a~d~-~~~~~ 218 (224)
T d1hg3a_ 168 LVKKVNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKAKDP-EKAIW 218 (224)
T ss_dssp HHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTCSSH-HHHHH
T ss_pred hhhhhccccceEEeCCcCCHHHHHHHHhCCCCEEEEcceeecCcCH-HHHHH
Confidence 3333345899999999999999999999999999999999987774 44444
|
| >d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Probab=96.55 E-value=0.028 Score=48.77 Aligned_cols=120 Identities=13% Similarity=0.130 Sum_probs=83.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCcc
Q 017176 73 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDS 150 (376)
Q Consensus 73 g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~ 150 (376)
|.+++.+.+.++.+.+.||+.+-+..|. .+.+.-.+.|+++|+.+ +..+.+-.--+|+
T Consensus 18 ~~~~~~~~~~~~~~~~~Gf~~~Kikvg~----------------~~~~~di~~v~~vr~~~g~~~~l~vDan~~~~---- 77 (247)
T d1tzza1 18 GKGLSMLRGEMRGYLDRGYNVVKMKIGG----------------APIEEDRMRIEAVLEEIGKDAQLAVDANGRFN---- 77 (247)
T ss_dssp --CHHHHHHHHHHHHTTTCSEEEEECSS----------------SCHHHHHHHHHHHHHHHTTTCEEEEECTTCCC----
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEECCC----------------CCHHHHHHHHHHHHHhccCCceEEeccccccc----
Confidence 4579999999999999999999886431 23566677788888766 3445555454553
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCc
Q 017176 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGA 230 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Ga 230 (376)
..+.+++ .+.+++.++.++- . .+++.+++.+.++++.. ++||.+.-.+.+..++.++++.|+
T Consensus 78 ~~~Ai~~-~~~l~~~~i~wiE----e------------P~~~~d~~~~~~l~~~~-~ipia~gE~~~~~~~~~~~i~~~a 139 (247)
T d1tzza1 78 LETGIAY-AKMLRDYPLFWYE----E------------VGDPLDYALQAALAEFY-PGPMATGENLFSHQDARNLLRYGG 139 (247)
T ss_dssp HHHHHHH-HHHHTTSCCSEEE----C------------CSCTTCHHHHHHHTTTC-CSCEEECTTCCSHHHHHHHHHHSC
T ss_pred chhHHHH-Hhhcchhhhhhhc----c------------ccccccchhhhhhhhcc-ccccccchhhhhhHHHHHHHHccC
Confidence 4455554 4556778887765 1 11222366677776654 899999999999999999998664
|
| >d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=96.43 E-value=0.022 Score=48.98 Aligned_cols=158 Identities=17% Similarity=0.238 Sum_probs=93.6
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHCCCCE--EEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC
Q 017176 66 PIVLQIGGSNLDNLAKATELANAYNYDE--INLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 143 (376)
Q Consensus 66 p~~vQL~g~~~~~~~~aa~~~~~~G~d~--IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~ 143 (376)
.+.+.|...+...+.+..+.+++.|+|. |||.=|.-+++. .+| -++++.+++.+++|+.|-+=.
T Consensus 4 ~IspSil~~d~~~l~~~i~~l~~~g~d~iHiDImDG~Fvpn~----t~~----------~~~~~~i~~~t~~~~dvHLMv 69 (221)
T d1tqja_ 4 VVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNI----TIG----------PLIVDAIRPLTKKTLDVHLMI 69 (221)
T ss_dssp EEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCB----CBC----------HHHHHHHGGGCCSEEEEEEES
T ss_pred EEEechhccCHHHHHHHHHHHHHcCCCEEEEECccCCccCcc----ccC----------cHhHHhhhhccCcceeeeEEE
Confidence 4667888888888999999999999996 455545444432 234 246777777777777665443
Q ss_pred CCCCCccHHHHHHHHHHHhhcCCccEEEEccC----------------------------ccc-----------------
Q 017176 144 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR----------------------------KAL----------------- 178 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r----------------------------~~~----------------- 178 (376)
.+...+ + .++ .++|++.+++|.- |..
T Consensus 70 --~~P~~~---i---~~~-~~~g~~~i~~H~E~~~~~~~~~~~~~i~~~g~~~Gial~p~T~~~~l~~~l~~~d~vlvM~ 140 (221)
T d1tqja_ 70 --VEPEKY---V---EDF-AKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMS 140 (221)
T ss_dssp --SSGGGT---H---HHH-HHHTCSEEEEECSTTTCTTHHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGGCSEEEEES
T ss_pred --eCHHHH---H---HHH-hhccceEEEEeeccccChhhHHHHHHHHHCCCCEEEEecCCCcHHHHHHHHhhhcEEEEEE
Confidence 221111 1 111 1355555555532 210
Q ss_pred -cCCCCCCCCCCCCcccHHHHHHHH---h-hCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchhhHhhh
Q 017176 179 -LNGISPAENRTIPPLKYEYYYALL---R-DFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 251 (376)
Q Consensus 179 -~~g~~~~~~~~~~~~~~~~v~~~~---~-~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~ 251 (376)
..|.++ ...-+..++-+.+++ + ..+++.|...|||+ .+.+..+.+.|||.+.+|++++.++.. .+.+.
T Consensus 141 V~pG~~G---Q~f~~~~~~ki~~l~~~~~~~~~~~~I~VDGGIn-~~~i~~l~~~Gad~~V~GS~if~~~d~-~~~i~ 213 (221)
T d1tqja_ 141 VNPGFGG---QSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLK-PNNTWQVLEAGANAIVAGSAVFNAPNY-AEAIA 213 (221)
T ss_dssp SCC-------CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCC-TTTTHHHHHHTCCEEEESHHHHTSSCH-HHHHH
T ss_pred ecCCCCC---cccchhhHHHHHHHHhhhhccccceEEEEECCcC-HHHHHHHHHcCCCEEEEChHHhCCCCH-HHHHH
Confidence 001111 111112234444432 2 23578899999995 457888888999999999999998885 44444
|
| >d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Plasmodium falciparum [TaxId: 5833]
Probab=96.41 E-value=0.19 Score=42.64 Aligned_cols=74 Identities=11% Similarity=0.234 Sum_probs=53.1
Q ss_pred CCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017176 165 SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 165 ~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
.-+|.|.+-+-.....|- ..-+-.++-+.++++..+++.|...||| +.+.+..+.+.|||.+.+|++++.++.
T Consensus 134 ~~~d~vlim~V~pG~~GQ------~f~~~~l~KI~~lr~~~~~~~I~VDGGI-n~~~i~~l~~aGad~iV~GS~if~~~d 206 (221)
T d1tqxa_ 134 NLINTVLVMTVEPGFGGQ------SFMHDMMGKVSFLRKKYKNLNIQVDGGL-NIETTEISASHGANIIVAGTSIFNAED 206 (221)
T ss_dssp TCCSEEEEESSCTTCSSC------CCCGGGHHHHHHHHHHCTTCEEEEESSC-CHHHHHHHHHHTCCEEEESHHHHTCSS
T ss_pred ccccEEEEEeeccccccc------ccCcchhHHHHHHHHhcCCcceEEEccc-CHHhHHHHHHcCCCEEEEChHHHCCCC
Confidence 457777665433222221 1122346777788777788999999999 567899999999999999999988777
Q ss_pred h
Q 017176 245 Y 245 (376)
Q Consensus 245 l 245 (376)
.
T Consensus 207 ~ 207 (221)
T d1tqxa_ 207 P 207 (221)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: RTS beta protein species: Xanthomonas campestris pv. campestris [TaxId: 340]
Probab=96.38 E-value=0.022 Score=49.68 Aligned_cols=125 Identities=11% Similarity=0.079 Sum_probs=84.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCcc
Q 017176 73 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDS 150 (376)
Q Consensus 73 g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~ 150 (376)
|.+|+++.+-++.+.+.||+.+-+..|. +++.-.+.++++|+.+ +..+.+-.--+|+
T Consensus 13 ~~s~ee~~~~a~~~~~~Gf~~~KikvG~-----------------~~~~di~~v~~vr~~~g~~~~l~vDaN~~~~---- 71 (252)
T d1yeya1 13 GYSDEKLVRLAKEAVADGFRTIKLKVGA-----------------NVQDDIRRCRLARAAIGPDIAMAVDANQRWD---- 71 (252)
T ss_dssp ---CHHHHHHHHHHHHTTCSEEEEECCS-----------------CHHHHHHHHHHHHHHHCSSSEEEEECTTCCC----
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEECCC-----------------CHHHHHHHHHHHHHHhCCCceEeeccccCcc----
Confidence 5578899999998888999999886542 2445566777888776 3455555555553
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cC
Q 017176 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KG 229 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~G 229 (376)
.++.+++ .+.+++.++.++. ..+++.++....++.++..++||.+.=.+.+..++.++++ ..
T Consensus 72 ~~~A~~~-~~~l~~~~~~~iE----------------eP~~~~d~~~~~~~~~~~~~ipia~gE~~~~~~~~~~~i~~~a 134 (252)
T d1yeya1 72 VGPAIDW-MRQLAEFDIAWIE----------------EPTSPDDVLGHAAIRQGITPVPVSTGEHTQNRVVFKQLLQAGA 134 (252)
T ss_dssp HHHHHHH-HHTTGGGCCSCEE----------------CCSCTTCHHHHHHHHHHSTTSCEECCTTCCSHHHHHHHHHHTC
T ss_pred hHHHHHH-HHhhhhcCceeec----------------CCcchhhHHHHHHHhhccCCCceeccccccchhhhhhHhhccc
Confidence 3444443 3445667776655 1122334566666666656899999999999999999998 45
Q ss_pred cCeeEE
Q 017176 230 AHHVMV 235 (376)
Q Consensus 230 ad~Vmi 235 (376)
+|.+++
T Consensus 135 ~d~~~~ 140 (252)
T d1yeya1 135 VDLIQI 140 (252)
T ss_dssp CSEECC
T ss_pred cceecc
Confidence 798876
|
| >d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Thermoproteus tenax [TaxId: 2271]
Probab=96.35 E-value=0.0039 Score=54.01 Aligned_cols=136 Identities=18% Similarity=0.150 Sum_probs=77.3
Q ss_pred HHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHH
Q 017176 82 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKV 161 (376)
Q Consensus 82 aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~ 161 (376)
.+..+++.|.+++-++-+ -|+-.+ +.+.+.++..++. ++.+.+-+ .+ .++..+
T Consensus 77 s~~~l~~~g~~~viigHs------ErR~~~--------~e~~~~~~~~~~~-gl~~ivcv----ge---~~~~~~----- 129 (226)
T d1w0ma_ 77 SLENIKEAGGSGVILNHS------EAPLKL--------NDLARLVAKAKSL-GLDVVVCA----PD---PRTSLA----- 129 (226)
T ss_dssp BHHHHHHHTCCEEEECCT------TSCCBH--------HHHHHHHHHHHHT-TCEEEEEE----SS---HHHHHH-----
T ss_pred eHhhhcccccceEEeech------hhhhhc--------cchHHHHHHHHHc-CCEEEEec----Cc---hHHhhh-----
Confidence 345678889999988421 111111 2344555554433 33333322 12 222221
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017176 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
..+.+.+.|.+.+....-.|.+.. ..........+..+.+..+++||+.-|||.+.+++..+++.|+|||.||++.+.
T Consensus 130 ~~~~~~~iIayep~waIGtg~~~~--~~~~~~i~~~i~~~~~~~~~i~vlygGgV~~~n~~~~~~~~g~dGvLVGsA~l~ 207 (226)
T d1w0ma_ 130 AAALGPHAVAVEPPELIGTGRAVS--RYKPEAIVETVGLVSRHFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVK 207 (226)
T ss_dssp HHHTCCSEEEECCGGGTTTSCCHH--HHCHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHT
T ss_pred hhccccceeeecchhhccCCCCCC--hhhhhHhhhhhhhhhccCCCceEEEecCcCChHHHHHHhcCCCCEEEechheec
Confidence 224677888876654321221110 000000011233334445689999999999999999999999999999999998
Q ss_pred CCchh
Q 017176 242 NPWYT 246 (376)
Q Consensus 242 ~P~lf 246 (376)
.++.|
T Consensus 208 a~d~~ 212 (226)
T d1w0ma_ 208 AKDPY 212 (226)
T ss_dssp CSSHH
T ss_pred CCCHH
Confidence 77654
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=96.32 E-value=0.0024 Score=55.86 Aligned_cols=77 Identities=12% Similarity=0.147 Sum_probs=55.1
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.+++.|++.++|--=.+...+. +.....+.. .++. .+|+...|||+|.++++++++.|+|-|.+++.
T Consensus 36 a~~~~~~g~~~l~ivDLda~~~~~---------~~~~~~~~~-~~~~-~~pl~~gGGI~s~~~~~~~~~~Ga~kVvi~s~ 104 (241)
T d1qo2a_ 36 VEKLIEEGFTLIHVVDLSNAIENS---------GENLPVLEK-LSEF-AEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSK 104 (241)
T ss_dssp HHHHHHTTCCCEEEEEHHHHHHCC---------CTTHHHHHH-GGGG-GGGEEEESSCCSHHHHHHHHHTTCCEEEECHH
T ss_pred HHHHHHCCCCEEEEEecccccccC---------Ccchhheeh-hccc-ccchhhhhhhhhhhhhhhccccccceEecCcc
Confidence 455667899999874221111111 111333333 3333 57999999999999999999999999999999
Q ss_pred HhhCCchh
Q 017176 239 AYQNPWYT 246 (376)
Q Consensus 239 ~l~~P~lf 246 (376)
++.||.+.
T Consensus 105 ~~~~~~~~ 112 (241)
T d1qo2a_ 105 VLEDPSFL 112 (241)
T ss_dssp HHHCTTHH
T ss_pred cccCchhh
Confidence 99999975
|
| >d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: 2-keto-3-deoxy gluconate aldolase Eda species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.31 E-value=0.31 Score=42.79 Aligned_cols=151 Identities=15% Similarity=0.137 Sum_probs=90.1
Q ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe
Q 017176 62 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 141 (376)
Q Consensus 62 ~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 141 (376)
+...++++.+.+.+.++..+.++.++++|+|++-+- .|... .+ -..+.+.+-.++|.+++++|+.+--
T Consensus 63 ~~~~~~i~gv~~~st~~~i~~a~~a~~~Ga~~~~~~--~P~~~-~~---------~~~~~i~~~f~~Ia~a~~~pi~lYn 130 (293)
T d1w3ia_ 63 DVTNKIIFQVGGLNLDDAIRLAKLSKDFDIVGIASY--APYYY-PR---------MSEKHLVKYFKTLCEVSPHPVYLYN 130 (293)
T ss_dssp TTCSCEEEECCCSCHHHHHHHHHHGGGSCCSEEEEE--CCCSC-SS---------CCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred hhccccccccccchhhhhhhhhhhhhhhcccccccc--ccchh-cc---------chHHHHHHHHHHHHHhhccceeeec
Confidence 345678999999999999999999999999999764 34321 11 1345577778888888889988854
Q ss_pred cC---CCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCC
Q 017176 142 RI---GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 218 (376)
Q Consensus 142 R~---g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s 218 (376)
.+ |.+- +. +++ .++ ..+..|--. ++ ++..+.++.+..++..|+ +|.=
T Consensus 131 ~P~~~g~~l--~~-~~~---~~l---~ni~giK~s---------s~---------d~~~~~~~~~~~~~~~v~-~G~d-- 180 (293)
T d1w3ia_ 131 YPTATGKDI--DA-KVA---KEI---GCFTGVKDT---------IE---------NIIHTLDYKRLNPNMLVY-SGSD-- 180 (293)
T ss_dssp CHHHHSCCC--CH-HHH---HHH---CCEEEEEEC---------CS---------CHHHHHHHHHHCTTSEEE-ECCS--
T ss_pred ccccccccc--ch-hhH---Hhh---hhhhccccc---------cc---------cHHHHHHHHhhccceecc-cccc--
Confidence 33 3222 12 222 222 122222111 11 134445555555566654 4431
Q ss_pred HHHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhC
Q 017176 219 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256 (376)
Q Consensus 219 ~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 256 (376)
+.+...+..|++|.+.|-+-+ -|+++.+.++....|
T Consensus 181 -~~~~~~~~~Ga~G~is~~~n~-~P~~~~~l~~~~~~g 216 (293)
T d1w3ia_ 181 -MLIATVASTGLDGNVAAGSNY-LPEVTVTIKKLAMER 216 (293)
T ss_dssp -TTHHHHHHTTCCEEECGGGGT-CHHHHHHHHHHHHTT
T ss_pred -cchhhhhccCCceeeecccch-hhhhhhhHHHHHHhc
Confidence 234566778999999987753 577654444443444
|
| >d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Muconate-lactonizing enzyme species: Pseudomonas putida [TaxId: 303]
Probab=96.26 E-value=0.074 Score=45.80 Aligned_cols=133 Identities=11% Similarity=0.039 Sum_probs=88.7
Q ss_pred CCEEEEecCCCHHH-HHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEe
Q 017176 65 HPIVLQIGGSNLDN-LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKC 141 (376)
Q Consensus 65 ~p~~vQL~g~~~~~-~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKi 141 (376)
-|+...+...+++. +.++.+.+++.||..+-|.+|- ++++.-.+.++++++.+ +..+.|-.
T Consensus 6 ipv~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~----------------~~~~~Di~~i~~ir~~~g~~~~l~vDa 69 (242)
T d1muca1 6 LEVAWTLASGDTARDIAEARHMLEIRRHRVFKLKIGA----------------NPVEQDLKHVVTIKRELGDSASVRVDV 69 (242)
T ss_dssp EEBCEEECCSCHHHHHHHHHHHHHTTSCSEEEEECSS----------------SCHHHHHHHHHHHHHHHGGGSEEEEEC
T ss_pred EEEEEEecCCCcHHHHHHHHHHHHHCCCCEEEEEECC----------------CCHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 35556666565554 5666677777799999885431 12344456677777765 45566665
Q ss_pred cCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHH
Q 017176 142 RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE 221 (376)
Q Consensus 142 R~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~d 221 (376)
.-+|+ ..+.++++ +.+++.|+.+|. ..+++.+++.+.+++++. ++||.+...+.+..+
T Consensus 70 N~~~~----~~~A~~~~-~~l~~~~i~~iE----------------eP~~~~d~~~~~~L~~~~-~~pIa~~E~~~~~~~ 127 (242)
T d1muca1 70 NQYWD----ESQAIRAC-QVLGDNGIDLIE----------------QPISRINRGGQVRLNQRT-PAPIMADESIESVED 127 (242)
T ss_dssp TTCBC----HHHHHHHH-HHHHHTTCCCEE----------------CCBCTTCHHHHHHHHHHC-SSCEEESTTCSSHHH
T ss_pred CCCCc----HHHHHHHH-HHhhhhhHHHhh----------------cchhhhhhhhhhhhhhhh-hheeecccccccccc
Confidence 55563 44555554 445678887764 112233467777777765 899999999999999
Q ss_pred HHHHHH-cCcCeeEE
Q 017176 222 VNAALR-KGAHHVMV 235 (376)
Q Consensus 222 a~~~l~-~Gad~Vmi 235 (376)
+..+++ ..+|.+++
T Consensus 128 ~~~~i~~~~~d~~~~ 142 (242)
T d1muca1 128 AFSLAADGAASIFAL 142 (242)
T ss_dssp HHHHHHHTCCSEEEE
T ss_pred hhhhhhccccccccc
Confidence 999998 45888887
|
| >d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Archaeal fructose 1,6-bisphosphate aldolase species: Archaeon Thermoproteus tenax [TaxId: 2271]
Probab=96.17 E-value=0.059 Score=46.99 Aligned_cols=130 Identities=15% Similarity=0.138 Sum_probs=76.1
Q ss_pred HHHHHCCCCEEEecC--CCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC-C--CCCCccHHHHHHHH
Q 017176 84 ELANAYNYDEINLNC--GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI-G--VDDHDSYNQLCDFI 158 (376)
Q Consensus 84 ~~~~~~G~d~IeiN~--gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~-g--~~~~~~~~~~~~~i 158 (376)
+.+.+.|+|+|-+++ |++.. . +..+.+.+++++.. ..++|+.+-.-+ | ..+..+. +.+...
T Consensus 97 e~a~rlGadaV~~~v~~g~~~e--------~----~~l~~~~~v~~e~~-~~glP~v~e~~p~g~~~~~~~~~-~~v~~a 162 (251)
T d1ojxa_ 97 EEAVSLGASAVGYTIYPGSGFE--------W----KMFEELARIKRDAV-KFDLPLVVWSYPRGGKVVNETAP-EIVAYA 162 (251)
T ss_dssp HHHHHTTCSEEEEEECTTSTTH--------H----HHHHHHHHHHHHHH-HHTCCEEEEECCCSTTCCCTTCH-HHHHHH
T ss_pred HHHHhchhceEEEEEeCCCCch--------H----HHHHHHHHHHHHHH-HcCCeEEEEEeecCCccccCCCH-HHHHHH
Confidence 445678999986653 32221 0 12344455555433 348897765432 1 2222233 344455
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCC--CHHHHHH----HHHcCcCe
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN--TVDEVNA----ALRKGAHH 232 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~--s~~da~~----~l~~Gad~ 232 (376)
++++.+.|+|.+-+--- + +.+...++++....+||+..||-. +.++..+ +++.||.|
T Consensus 163 aria~ElGaDivK~~~p-----~------------~~~~~~~~v~~a~~~pv~~~gG~~~~~~~~~l~~~~~a~~~Ga~G 225 (251)
T d1ojxa_ 163 ARIALELGADAMKIKYT-----G------------DPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALG 225 (251)
T ss_dssp HHHHHHHTCSEEEECCC-----S------------SHHHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHhCCCEEEecCC-----C------------cHHHHHHHHHhcCCCceEEeCCCCCCCHHHHHHHHHHHHHCCCcE
Confidence 66777899999886321 1 133444555544478888887743 5666544 45579999
Q ss_pred eEEchHHhhCCc
Q 017176 233 VMVGRAAYQNPW 244 (376)
Q Consensus 233 VmiGRa~l~~P~ 244 (376)
|.+||.+..+|.
T Consensus 226 ~~~GRni~q~~~ 237 (251)
T d1ojxa_ 226 IAVGRNVWQRRD 237 (251)
T ss_dssp EEESHHHHTSTT
T ss_pred EeechhhhCcCc
Confidence 999999986654
|
| >d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=96.16 E-value=0.061 Score=45.98 Aligned_cols=131 Identities=9% Similarity=0.059 Sum_probs=85.8
Q ss_pred EecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC--ccEEEEecCCCCC
Q 017176 70 QIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVDD 147 (376)
Q Consensus 70 QL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~--~pv~vKiR~g~~~ 147 (376)
=+...+|+++.+.++.+.+.||+.+-+..|.+ +.+.-.+.++++|+.++ +.+.+-.--+|+
T Consensus 10 t~~~~~pe~~~~~a~~~~~~G~~~~Kikig~~----------------~~~~d~~~i~~ir~~~g~~~~i~vD~N~~~~- 72 (234)
T d1jpma1 10 TVSVNSPEEMAADAENYLKQGFQTLKIKVGKD----------------DIATDIARIQEIRKRVGSAVKLRLDANQGWR- 72 (234)
T ss_dssp EECCSCHHHHHHHHHHHHHTTCCEEEEECSSS----------------CHHHHHHHHHHHHHHHGGGSEEEEECTTCSC-
T ss_pred EEcCCCHHHHHHHHHHHHHCCCCEEEEECCCC----------------CHHHHHHHHHHHHHHcCchhhhhhhcccccc-
Confidence 34456899999999999999999999975422 34444566777777663 334443333443
Q ss_pred CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH
Q 017176 148 HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR 227 (376)
Q Consensus 148 ~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~ 227 (376)
.++.++++ +.+++.+.+..-+-- .+++-+++.+.++++.. ++||.....+.+..+..++++
T Consensus 73 ---~~~a~~~~-~~le~~~~~i~~~Ee--------------P~~~~d~~~~~~l~~~~-~~pia~gE~~~~~~~~~~~i~ 133 (234)
T d1jpma1 73 ---PKEAVTAI-RKMEDAGLGIELVEQ--------------PVHKDDLAGLKKVTDAT-DTPIMADESVFTPRQAFEVLQ 133 (234)
T ss_dssp ---HHHHHHHH-HHHHHTTCCEEEEEC--------------CSCTTCHHHHHHHHHHC-SSCEEESTTCSSHHHHHHHHH
T ss_pred ---hHHHHHHH-HHHHhccCceeeecC--------------CccccCHHHHHHhhccc-cceeecccccccchhhhhhhc
Confidence 44555543 344554443222211 11222367777777765 899999999999999999998
Q ss_pred -cCcCeeEEc
Q 017176 228 -KGAHHVMVG 236 (376)
Q Consensus 228 -~Gad~VmiG 236 (376)
..+|.|++-
T Consensus 134 ~~~~d~v~~d 143 (234)
T d1jpma1 134 TRSADLINIK 143 (234)
T ss_dssp TTCCSEEEEC
T ss_pred cCCcCeEEEe
Confidence 459999883
|
| >d1nu5a1 c.1.11.2 (A:127-369) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Probab=96.11 E-value=0.062 Score=46.33 Aligned_cols=134 Identities=12% Similarity=0.156 Sum_probs=88.6
Q ss_pred CCEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC--ccEEEEe
Q 017176 65 HPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKC 141 (376)
Q Consensus 65 ~p~~vQL~g~-~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~--~pv~vKi 141 (376)
-|+..-+.+. .++++.++++.+.+.||+.+-|..|- ++++.-.+.++++++.++ ..+.+-.
T Consensus 6 ipv~~~~~~~~~~~~~~e~~~~~~~~G~~~~KiKvG~----------------~~~~~Di~~v~~ir~~~g~~~~l~vDa 69 (243)
T d1nu5a1 6 IPIAWTLASGDTARDIDSALEMIETRRHNRFKVKLGA----------------RTPAQDLEHIRSIVKAVGDRASVRVDV 69 (243)
T ss_dssp EEBCEEECSSCHHHHHHHHHHHHHTTSCSEEEEECSS----------------SCHHHHHHHHHHHHHHHGGGCEEEEEC
T ss_pred eEEEEEEcCCChHHHHHHHHHHHHhCCCCEEEEEeCC----------------CCHHHHHHHHHHHHHHhCcccceEEEC
Confidence 3554555554 45667777788888899999884331 234455566777777663 4455544
Q ss_pred cCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHH
Q 017176 142 RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE 221 (376)
Q Consensus 142 R~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~d 221 (376)
--+|+ .++.++++ +.+++.++.++- ..+++.+++.++++++.. ++||.+.-.+.+..+
T Consensus 70 N~~~~----~~~A~~~~-~~l~~~~~~~iE----------------eP~~~~~~~~~~~l~~~~-~ipIa~gE~~~~~~~ 127 (243)
T d1nu5a1 70 NQGWD----EQTASIWI-PRLEEAGVELVE----------------QPVPRANFGALRRLTEQN-GVAILADESLSSLSS 127 (243)
T ss_dssp TTCCC----HHHHHHHH-HHHHHHTCCEEE----------------CCSCTTCHHHHHHHHHHC-SSEEEESTTCCSHHH
T ss_pred CCCcc----chhHHHHH-HHhcchhhhhhh----------------hhhhhccccccccchhcc-ccccccccccccchh
Confidence 44553 44555544 344667877764 112223467777887775 899999999999999
Q ss_pred HHHHHH-cCcCeeEEc
Q 017176 222 VNAALR-KGAHHVMVG 236 (376)
Q Consensus 222 a~~~l~-~Gad~VmiG 236 (376)
...+++ ..+|.+++-
T Consensus 128 ~~~~i~~~~~d~~~~d 143 (243)
T d1nu5a1 128 AFELARDHAVDAFSLK 143 (243)
T ss_dssp HHHHHHTTCCSEEEEC
T ss_pred hhhccccccccccccc
Confidence 999999 458988874
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=96.07 E-value=0.14 Score=45.04 Aligned_cols=208 Identities=10% Similarity=0.043 Sum_probs=109.7
Q ss_pred CcEEEccCCCCChHHHHHHHHHhCCCcEEEecceee-cccccccch---hhhhhc-----cCCCCCCEEEEec-C-CCHH
Q 017176 9 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAA-ETIIYQQGN---LDRFLA-----FSPEQHPIVLQIG-G-SNLD 77 (376)
Q Consensus 9 nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~-~~~~~~~~~---~~~~~~-----~~~~~~p~~vQL~-g-~~~~ 77 (376)
+.+++.| ++-|.--.+++.+.| +..++|-.... ..+...+.. ..+++. ....+-|+++=+= | .++.
T Consensus 15 ~~~~~~p--~~~Da~SAr~~e~aG-f~a~~~ss~~~aas~G~pD~~~lt~~e~~~~~~~I~~~~~lPv~~D~d~GyG~~~ 91 (275)
T d1s2wa_ 15 KDLEFIM--EAHNGLSARIVQEAG-FKGIWGSGLSVSAQLGVRDSNEASWTQVVEVLEFMSDASDVPILLDADTGYGNFN 91 (275)
T ss_dssp SSCEEEE--EECSHHHHHHHHHHT-CSCEEECCHHHHHTC---------CHHHHHHHHHHHHTCSSCEEEECCSSCSSHH
T ss_pred CCCEEee--cCcCHHHHHHHHHcC-CCEEEhhHHHHHHHcCCCCCCccchhhHHHHHHhhhcccCCceeEecccccccch
Confidence 3455666 666777677776676 55555543332 222222211 111111 1235678888762 1 2688
Q ss_pred HHHHHHHHHHHCCCCEEEecCC-CCCccccCCCCc-ccc-ccCCHHH-HHHHHHHHhcccCccEEEEecCCCC-CCccHH
Q 017176 78 NLAKATELANAYNYDEINLNCG-CPSPKVAGHGCF-GVS-LMLDPKF-VGEAMSVIAANTNVPVSVKCRIGVD-DHDSYN 152 (376)
Q Consensus 78 ~~~~aa~~~~~~G~d~IeiN~g-cP~~~v~r~g~y-G~~-l~~~~~~-~~eiv~~v~~~~~~pv~vKiR~g~~-~~~~~~ 152 (376)
...+.++.+.++|+.+|.|.=. .|-. + +.+ |.. .+...+. ...+..++....+.++.+=-|..-. ....++
T Consensus 92 ~v~~tv~~~~~aGaagi~iEDq~~pk~--~--~~~~~~~~~~~~~~~~~~ki~aa~~~~~~~~~~i~ARtDa~~~~~gl~ 167 (275)
T d1s2wa_ 92 NARRLVRKLEDRGVAGACLEDKLFPKT--N--SLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARVEAFIAGWGLD 167 (275)
T ss_dssp HHHHHHHHHHHTTCCEEEEECBCC------------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTTTCCHH
T ss_pred HHHHHHHHHHHhccceeEeeccccccc--c--ccccccccccccHHHHHHHHHhhhhhccCcceeEEecchhhhhcCCHH
Confidence 9999999999999999999642 2211 1 111 111 1233443 4444444433344444444454321 113477
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHh-hCCCCeEEEecCCCCHHHHHHHHHcCcC
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLR-DFPDLTFTLNGGINTVDEVNAALRKGAH 231 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~-~~~~ipVi~nGgI~s~~da~~~l~~Gad 231 (376)
+.++.. +.+.++|+|.|-+++.+.. .+.+..+.+ ....+|+..|..-.....+.++.+.|+.
T Consensus 168 eai~R~-~aY~eAGAD~vf~~~~~~~----------------~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~eL~~lGv~ 230 (275)
T d1s2wa_ 168 EALKRA-EAYRNAGADAILMHSKKAD----------------PSDIEAFMKAWNNQGPVVIVPTKYYKTPTDHFRDMGVS 230 (275)
T ss_dssp HHHHHH-HHHHHTTCSEEEECCCSSS----------------SHHHHHHHHHHTTCSCEEECCSTTTTSCHHHHHHHTCC
T ss_pred HHHHHH-HHHHhcCCCeeeeccccCc----------------HHHHHHHHHhhcCCCCEEEecccccccHHHHHHHcCCC
Confidence 777664 4556899999999986421 111222211 1247888887532221223455557999
Q ss_pred eeEEchHHh
Q 017176 232 HVMVGRAAY 240 (376)
Q Consensus 232 ~VmiGRa~l 240 (376)
.|..|-.++
T Consensus 231 ~v~~g~~~~ 239 (275)
T d1s2wa_ 231 MVIWANHNL 239 (275)
T ss_dssp EEEECSHHH
T ss_pred EEEEchHHH
Confidence 999877654
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=96.05 E-value=0.03 Score=50.08 Aligned_cols=199 Identities=10% Similarity=0.045 Sum_probs=110.1
Q ss_pred CCChHHHHHHHHHhCCCcEEEe-cc-eeecccccccch---hhhhhc-----cCCCCCCEEEEe---cCCCHHHHHHHHH
Q 017176 18 DWTDNHYRTLARLISKHAWLYT-EM-LAAETIIYQQGN---LDRFLA-----FSPEQHPIVLQI---GGSNLDNLAKATE 84 (376)
Q Consensus 18 ~~td~~~r~~~~~~Gg~gl~~t-e~-v~~~~~~~~~~~---~~~~~~-----~~~~~~p~~vQL---~g~~~~~~~~aa~ 84 (376)
++-|..-.+++.+.| ...++| .. +++..+...+.. ..+++. ....+.|+++-. +|+.+....+.++
T Consensus 22 ~~~D~~sA~~~e~~G-f~a~~~sg~~~sa~~~G~pD~~~~~~~e~~~~~~~i~~a~~~Pvi~D~d~GyG~~~~~v~~~v~ 100 (289)
T d1muma_ 22 GTINANHALLAQRAG-YQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGFGSSAFNVARTVK 100 (289)
T ss_dssp ECSSHHHHHHHHHTT-CSCEEECHHHHHHTTSCCCSSSCCCHHHHHHHHHHHHHHCCSCEEEECTTCSSSSHHHHHHHHH
T ss_pred cCCCHHHHHHHHHcC-CCEEEhhHHHHHHHccCCCCCCCCChHHHHHHHHHHhcccCCCeeecccccccccchHHHHHHH
Confidence 566666667777776 555554 44 222223222211 111111 122467888876 4667889999999
Q ss_pred HHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHhh
Q 017176 85 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSS 163 (376)
Q Consensus 85 ~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e 163 (376)
.+.++|+.+|.|-=. ..+| +.+.+++..+-..+....-+++..+.. +..+.+=-|........+++.++.. +...
T Consensus 101 ~~~~aGvagi~iEDq-~~pk--~~g~~~~~~~~~~~e~~~ki~aa~~a~~~~d~~IiARTDa~~~~g~~eAi~R~-~aY~ 176 (289)
T d1muma_ 101 SMIKAGAAGLHIEDQ-VGAK--RCGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAAIERA-QAYV 176 (289)
T ss_dssp HHHHHTCSEEEEECB-CCCS--STTCCSCCCBCCHHHHHHHHHHHHHTCSSTTSEEEEEECCHHHHCHHHHHHHH-HHHH
T ss_pred HHHHCCCCEEEecCc-cccc--ccccccccceecHHHHHHHHHHHHHhcCCcchhheeccccccccCHHHHHHHH-HHhh
Confidence 999999999998532 1122 233344443334443333334433333 3234444454211112356666553 4556
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEe---cCCCCHHHHHHHHHcCcCeeEEchHH
Q 017176 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN---GGINTVDEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~n---GgI~s~~da~~~l~~Gad~VmiGRa~ 239 (376)
++|+|.|-+++-.. .+.+.++.+.. ++|+.+| |+-...-++.++.+.|+..|..|-.+
T Consensus 177 eAGAD~vf~~~~~~-----------------~~~~~~~~~~~-~~Pl~~~~~~~~~~p~~s~~eL~~~Gv~~v~~~~~~ 237 (289)
T d1muma_ 177 EAGAEMLFPEAITE-----------------LAMYRQFADAV-QVPILANITEFGATPLFTTDELRSAHVAMALYPLSA 237 (289)
T ss_dssp HTTCSEEEETTCCC-----------------HHHHHHHHHHH-CSCBEEECCSSSSSCCCCHHHHHHTTCSEEEESSHH
T ss_pred hcCCcEEEecCCCC-----------------HHHHHHHHHhc-CCCEEEeecCcCCCccchHHHHHHhccceEEechHH
Confidence 89999999887431 45556666664 5676543 44332223456666899999887654
|
| >d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Haemophilus influenzae [TaxId: 727]
Probab=95.99 E-value=0.29 Score=43.03 Aligned_cols=158 Identities=12% Similarity=0.031 Sum_probs=94.6
Q ss_pred cCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEE
Q 017176 60 FSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSV 139 (376)
Q Consensus 60 ~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~v 139 (376)
......|+++.+.+.+.++..+.++.++++|+|+|-+- .|.- .+ -..+.+.+-.+.+.+.+++|+.+
T Consensus 69 ~~~~~~~vi~gv~~~s~~~~iela~~a~~~Gad~i~~~--pP~~--~~---------~s~~~~~~~~~~v~~~~~~pi~i 135 (293)
T d1f74a_ 69 EAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAV--TPFY--YK---------FSFPEIKHYYDTIIAETGSNMIV 135 (293)
T ss_dssp HHTTSSEEEEECCCSCHHHHHHHHHHHHHHTCSEEECC--CCCS--SC---------CCHHHHHHHHHHHHHHHCCCEEE
T ss_pred cccCccccccccccccHHHHHHHHHHHHHcCCCEeecc--Cccc--cc---------cchHHHHHHHhcccccCCceEEE
Confidence 34566799999999999999999999999999998652 3331 11 12345566667777777889987
Q ss_pred EecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCH
Q 017176 140 KCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV 219 (376)
Q Consensus 140 KiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~ 219 (376)
=--+.+... .+ ..+.+.++.+...+-.|-...+ +...+.++.+..++..|+..++-
T Consensus 136 Yn~P~~tg~-~l--~~~~l~~L~~~~~v~giK~~~~------------------~~~~~~~~~~~~~~~~v~~g~~~--- 191 (293)
T d1f74a_ 136 YSIPFLTGV-NM--GIEQFGELYKNPKVLGVKFTAG------------------DFYLLERLKKAYPNHLIWAGFDE--- 191 (293)
T ss_dssp ECCSSCSCH-HH--HHHHHHHHHTSTTEEEEEECCS------------------CHHHHHHHHHHCTTSEEEECCGG---
T ss_pred Eeeccceec-cc--cchhhhhhhhcccccccccCCC------------------CHHHHHHHhhcCCCeEEEeCccc---
Confidence 533322221 11 1223444554333333322111 14445566666667655543332
Q ss_pred HHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhC
Q 017176 220 DEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256 (376)
Q Consensus 220 ~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 256 (376)
.+..++..|++|.+.|.+-+ .|.++.+.++....|
T Consensus 192 -~~~~~~~~G~~G~i~~~~n~-~P~~~~~~~~~~~~g 226 (293)
T d1f74a_ 192 -MMLPAASLGVDGAIGSTFNV-NGVRARQIFELTKAG 226 (293)
T ss_dssp -GHHHHHHTTCCEEEESTHHH-HHHHHHHHHHHHHTT
T ss_pred -ccchhhhCCCcccccccchh-cchHHHHHHHhhhhh
Confidence 34456678999999998875 477755444444444
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=95.95 E-value=0.03 Score=47.79 Aligned_cols=152 Identities=13% Similarity=0.115 Sum_probs=86.5
Q ss_pred CCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCcc--------ccCCCCccccccCCHHHHHHHHHHHhcccCcc
Q 017176 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPK--------VAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 136 (376)
Q Consensus 65 ~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~--------v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~p 136 (376)
.|++.=|.+.++++..+.++.+.+.|+..|||.+-.|... ....=..|+.-.-+++.+.+.+++ +..
T Consensus 17 ~~iipvl~~~~~~~a~~~~~al~~~Gi~~iEitl~~p~a~~~i~~l~~~~p~~~vGaGTV~~~~~~~~a~~a-----Ga~ 91 (216)
T d1mxsa_ 17 ARILPVITIAREEDILPLADALAAGGIRTLEVTLRSQHGLKAIQVLREQRPELCVGAGTVLDRSMFAAVEAA-----GAQ 91 (216)
T ss_dssp HSEEEEECCSCGGGHHHHHHHHHHTTCCEEEEESSSTHHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHH-----TCS
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHhCCCcceeeeeeecHHHHHHHHhC-----CCC
Confidence 4677778889999999999999999999999987655310 000011233333444444444333 111
Q ss_pred EEEEecCCCCCC----------------ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHH
Q 017176 137 VSVKCRIGVDDH----------------DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA 200 (376)
Q Consensus 137 v~vKiR~g~~~~----------------~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~ 200 (376)
+.| .++++.. .+..|+.. . .++|++.+-+.+-... . ...+++.
T Consensus 92 Fiv--sP~~~~~v~~~a~~~~i~~iPGv~TpsEi~~----A-~~~G~~~vKlFPA~~~-~-------------g~~~ika 150 (216)
T d1mxsa_ 92 FVV--TPGITEDILEAGVDSEIPLLPGISTPSEIMM----G-YALGYRRFKLFPAEIS-G-------------GVAAIKA 150 (216)
T ss_dssp SEE--CSSCCHHHHHHHHHCSSCEECEECSHHHHHH----H-HTTTCCEEEETTHHHH-T-------------HHHHHHH
T ss_pred EEE--CCCCcHHHHHHHHhcCCCccCCcCCHHHHHH----H-HHCCCCEEEecccccc-c-------------cHHHHHH
Confidence 111 2222110 01112111 1 1355555554432110 0 1456777
Q ss_pred HHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017176 201 LLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 201 ~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
+..-+++++++..|||. .+++.+.++.|+-.+..|..++.+.
T Consensus 151 l~~p~p~~~fiptGGV~-~~n~~~yl~~~~v~avggs~l~~~~ 192 (216)
T d1mxsa_ 151 FGGPFGDIRFCPTGGVN-PANVRNYMALPNVMCVGTTWMLDSS 192 (216)
T ss_dssp HHTTTTTCEEEEBSSCC-TTTHHHHHHSTTBCCEEECTTSCHH
T ss_pred HhcccccCceeccCCCC-HHHHHHHHhcCCeEEEEccccCCHH
Confidence 77778899999999995 6899999997666666666554433
|
| >d1vcva1 c.1.10.1 (A:1-226) Deoxyribose-phosphate aldolase DeoC {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.91 E-value=0.036 Score=47.66 Aligned_cols=130 Identities=12% Similarity=0.040 Sum_probs=72.6
Q ss_pred HHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhh
Q 017176 84 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSS 163 (376)
Q Consensus 84 ~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e 163 (376)
+.+. .|+|.||+=. .||.-...+.+.+.+-+.++++.++ +..+|+-+-.... +-++... +.+++.
T Consensus 74 ~a~~-~GAdEID~Vi-----------n~~~~~~g~~~~v~~ei~~v~~~~~-~~~lKVIlEt~~L-~~~ei~~-~~~~~~ 138 (226)
T d1vcva1 74 SRLA-EVADEIDVVA-----------PIGLVKSRRWAEVRRDLISVVGAAG-GRVVKVITEEPYL-RDEERYT-LYDIIA 138 (226)
T ss_dssp HHHT-TTCSEEEEEC-----------CHHHHHTTCHHHHHHHHHHHHHHTT-TSEEEEECCGGGC-CHHHHHH-HHHHHH
T ss_pred HHHH-cCCCeeEEEe-----------cHHHHhCCCHHHHHHHHHHHHhccC-CCeEEEEeccccc-CHHHHHH-HHHHHH
Confidence 4344 4999999832 1355555677777777777877663 3346665522111 1223333 345566
Q ss_pred cCCccEEEEccCccccCCC-CCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHc
Q 017176 164 LSPTRHFIIHSRKALLNGI-SPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRK 228 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~-~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~ 228 (376)
++|+|+|--+.+....... .........+.....+.+..+.. .++-|=++|||+|.+++.++++.
T Consensus 139 ~aGadFIKTSTGf~~~g~~~~~~~~~~at~~~~~~~~~~~~~~g~~vgiKasGGIrt~~~A~~~i~a 205 (226)
T d1vcva1 139 EAGAHFIKSSTGFAEEAYAARQGNPVHSTPERAAAIARYIKEKGYRLGVKMAGGIRTREQAKAIVDA 205 (226)
T ss_dssp HHTCSEEECCCSCCCHHHHHHTTCCSSCCHHHHHHHHHHHHHHTCCCEEEEESSCCSHHHHHHHHHH
T ss_pred HcCcceeeecccccCCcccccccCcccCcHHHHHHHHHHHHHhCCceeEECcCCCCCHHHHHHHHHh
Confidence 7999999876543110000 00000001111233444555432 36788899999999999999973
|
| >d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: PcrB protein homolog YerE species: Bacillus subtilis [TaxId: 1423]
Probab=95.82 E-value=0.0077 Score=52.17 Aligned_cols=49 Identities=20% Similarity=0.213 Sum_probs=39.9
Q ss_pred HHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017176 195 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 195 ~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
.+.+..+++...++||+.-+||+|++++.++. .+||+|.+|+++..++.
T Consensus 169 ~~~~~~v~~~~~~~Pl~VGFGIst~e~a~~v~-~~ADgVVVGSAiv~~ie 217 (229)
T d1viza_ 169 IEAVKKTKAVLETSTLFYGGGIKDAETAKQYA-EHADVIVVGNAVYEDFD 217 (229)
T ss_dssp HHHHHHHHHTCSSSEEEEESSCCSHHHHHHHH-TTCSEEEECTHHHHCHH
T ss_pred chhHHHHHhhccCcceEEEcccCCHHHHHHHH-cCCCEEEECHHHHhhHH
Confidence 34455555655679999999999999999877 58999999999877654
|
| >d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl phosphate synthase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: (S)-3-O-geranylgeranylglyceryl phosphate synthase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.56 E-value=0.0065 Score=52.68 Aligned_cols=47 Identities=21% Similarity=0.374 Sum_probs=38.9
Q ss_pred HHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 195 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 195 ~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
.+.+..+++...++||+.-+||+|++++.++.+ +||+|.+|.++..+
T Consensus 175 ~~~~~~~~k~~~~~Pv~VGFGI~s~e~a~~~~~-~ADgvIVGSaive~ 221 (231)
T d2f6ua1 175 PELVAEVKKVLDKARLFYGGGIDSREKAREMLR-YADTIIVGNVIYEK 221 (231)
T ss_dssp HHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH-HSSEEEECHHHHHH
T ss_pred hhHHHHHHHhcCCCCEEEEeCcCCHHHHHHHHh-cCCEEEEChHHhcc
Confidence 345556666666799999999999999998876 79999999997543
|
| >d2mnra1 c.1.11.2 (A:133-359) Mandelate racemase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Probab=95.39 E-value=0.16 Score=43.07 Aligned_cols=124 Identities=10% Similarity=0.063 Sum_probs=84.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccH
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSY 151 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~ 151 (376)
.+++...+-++.+.+.||..+-|..|-+ +.+.-.+.++++++.+ +..+.+-.--+|+ .
T Consensus 11 d~~~~~~e~~~~~~~~G~~~~KikvG~~----------------~~~~di~~i~~ir~~~g~~~~l~vDaN~~~~----~ 70 (227)
T d2mnra1 11 DGVKLATERAVTAAELGFRAVKTKIGYP----------------ALDQDLAVVRSIRQAVGDDFGIMVDYNQSLD----V 70 (227)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECCCS----------------SHHHHHHHHHHHHHHHCTTSEEEEECTTCSC----H
T ss_pred CcHHHHHHHHHHHHHCCCCEEEEccCCC----------------CHHHHHHHHHHHHHHhCCCcEEEEeccccCC----h
Confidence 4577778888888889999998865422 2344456677777765 4455555444553 4
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCc
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGA 230 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Ga 230 (376)
++.++++ +.+++.|+.++. . .+++-+++..+++.+.. ++||.+.-.+.+.++...+++ ..+
T Consensus 71 ~~A~~~~-~~l~~~~~~~iE----e------------P~~~~~~~~~~~l~~~~-~ipia~gE~~~~~~~~~~~~~~~~~ 132 (227)
T d2mnra1 71 PAAIKRS-QALQQEGVTWIE----E------------PTLQHDYEGHQRIQSKL-NVPVQMGENWLGPEEMFKALSIGAC 132 (227)
T ss_dssp HHHHHHH-HHHHHHTCSEEE----C------------CSCTTCHHHHHHHHHTC-SSCEEECTTCCSHHHHHHHHHTTCC
T ss_pred HHHHHHH-HHhhhchhhhhc----C------------cccccchhhhHHHHHHc-CCccccCceeEeechhhhhHhcCce
Confidence 4555543 345677887766 1 12223467777877664 899999889999999999999 567
Q ss_pred CeeEE
Q 017176 231 HHVMV 235 (376)
Q Consensus 231 d~Vmi 235 (376)
|.+++
T Consensus 133 d~~~~ 137 (227)
T d2mnra1 133 RLAMP 137 (227)
T ss_dssp SEECC
T ss_pred eeeec
Confidence 87776
|
| >d2a4aa1 c.1.10.1 (A:3-258) Fructose-1,6-bisphosphate aldolase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Fructose-1,6-bisphosphate aldolase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=95.34 E-value=0.027 Score=49.41 Aligned_cols=146 Identities=16% Similarity=0.139 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHH---HHHHhcccCccEEEEecCCCCCCccHH
Q 017176 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA---MSVIAANTNVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~ei---v~~v~~~~~~pv~vKiR~g~~~~~~~~ 152 (376)
.+.-..-++.+.+.|+|.||+=+ + ||.-...+.+.+.+. +..+++..+ +..+|+-+-.....+ +
T Consensus 84 ~~~K~~Ea~~Ai~~GAdEID~Vi-----n------~~~l~~g~~~~v~e~~~~i~~~~~~~~-~~~lKVIlEt~~L~~-~ 150 (256)
T d2a4aa1 84 MEKVLNDTEKALDDGADEIDLVI-----N------YKKIIENTDEGLKEATKLTQSVKKLLT-NKILKVIIEVGELKT-E 150 (256)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEC-----C------HHHHHHSHHHHHHHHHHHHHHHHTTCT-TSEEEEECCHHHHCS-H
T ss_pred HHHHHHHHHHHHHcCCCeEEEec-----c------HHHHhcCcHHHHHHHHHHHHHHHhhcc-CCeeEeeehhhhcCc-H
Confidence 44444455566677999999832 1 344344445555554 444444432 233565442100011 2
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhh--------CCCCeEEEecCCCCHHHHHH
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD--------FPDLTFTLNGGINTVDEVNA 224 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~--------~~~ipVi~nGgI~s~~da~~ 224 (376)
+.+.....+..++|+|+|--+.+... .| + .+.....+.+.+++ ..++.|=++|||+|.+++.+
T Consensus 151 e~i~~~~~~~~~aGadFVKTSTG~~~-~g---a-----t~~~v~~m~~~v~e~~~~~~~~g~~~gVKASGGIrt~~~a~~ 221 (256)
T d2a4aa1 151 DLIIKTTLAVLNGNADFIKTSTGKVQ-IN---A-----TPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTASH 221 (256)
T ss_dssp HHHHHHHHHHHTTTCSEEECCCSCSS-CC---C-----CHHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSCCSHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHhccCCCC-CC---C-----CHHHHHHHHHHHHHHHhhccccCCceeEEecCCCCCHHHHHH
Confidence 33332333445799999876544211 11 1 11122333333321 24788999999999999999
Q ss_pred HHHcCcCeeEEchHHhhCCchh
Q 017176 225 ALRKGAHHVMVGRAAYQNPWYT 246 (376)
Q Consensus 225 ~l~~Gad~VmiGRa~l~~P~lf 246 (376)
++..|++.+ |-..+ +|..|
T Consensus 222 ~i~~g~~~l--G~~~~-~~~~f 240 (256)
T d2a4aa1 222 YILLARRFL--SSLAC-HPDNF 240 (256)
T ss_dssp HHHHHHHHT--C-------CCE
T ss_pred HHHHHHHhc--ccccc-cCCce
Confidence 999888864 33332 66664
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=95.32 E-value=0.051 Score=46.23 Aligned_cols=78 Identities=13% Similarity=0.165 Sum_probs=58.8
Q ss_pred cEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecC
Q 017176 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 215 (376)
Q Consensus 136 pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGg 215 (376)
|+..=+|. ++.++..++ ++.+.+.|+..|.+.-|+.. ..+.+.+++++++++ ++|.|-
T Consensus 16 ~iipvlr~--~~~~~a~~~----~~al~~~Gi~~iEitl~tp~---------------a~~~I~~l~~~~p~~-~vGaGT 73 (213)
T d1wbha1 16 PVVPVIVV--KKLEHAVPM----AKALVAGGVRVLNVTLRTEC---------------AVDAIRAIAKEVPEA-IVGAGT 73 (213)
T ss_dssp SEEEEECC--SSGGGHHHH----HHHHHHTTCCEEEEESCSTT---------------HHHHHHHHHHHCTTS-EEEEES
T ss_pred CEEEEEEC--CCHHHHHHH----HHHHHHCCCCEEEEeCCChh---------------HHHHHHHHHHHCCCC-eeeccc
Confidence 55555665 333444443 33455799999999877631 277888888888886 799999
Q ss_pred CCCHHHHHHHHHcCcCeeEE
Q 017176 216 INTVDEVNAALRKGAHHVMV 235 (376)
Q Consensus 216 I~s~~da~~~l~~Gad~Vmi 235 (376)
|.|.++++++++.||++++-
T Consensus 74 V~~~~~~~~a~~aGa~FivS 93 (213)
T d1wbha1 74 VLNPQQLAEVTEAGAQFAIS 93 (213)
T ss_dssp CCSHHHHHHHHHHTCSCEEE
T ss_pred cccHHHHHHHHHCCCcEEEC
Confidence 99999999999999998873
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=95.16 E-value=0.078 Score=45.12 Aligned_cols=77 Identities=16% Similarity=0.121 Sum_probs=56.6
Q ss_pred EEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCC
Q 017176 137 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 216 (376)
Q Consensus 137 v~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI 216 (376)
+.-=+|. ++.++..+++ +.+.+.|+..|.|.-|+.. .++.+..++++++++ ++|.|.|
T Consensus 19 iipvl~~--~~~~~a~~~~----~al~~~Gi~~iEitl~~p~---------------a~~~i~~l~~~~p~~-~vGaGTV 76 (216)
T d1mxsa_ 19 ILPVITI--AREEDILPLA----DALAAGGIRTLEVTLRSQH---------------GLKAIQVLREQRPEL-CVGAGTV 76 (216)
T ss_dssp EEEEECC--SCGGGHHHHH----HHHHHTTCCEEEEESSSTH---------------HHHHHHHHHHHCTTS-EEEEECC
T ss_pred EEEEEEC--CCHHHHHHHH----HHHHHCCCCEEEEeCCChh---------------HHHHHHHHHHhCCCc-ceeeeee
Confidence 3333554 3334444443 3455799999999877531 267888888888884 7999999
Q ss_pred CCHHHHHHHHHcCcCeeEE
Q 017176 217 NTVDEVNAALRKGAHHVMV 235 (376)
Q Consensus 217 ~s~~da~~~l~~Gad~Vmi 235 (376)
.|.++++++.+.||++++-
T Consensus 77 ~~~~~~~~a~~aGa~Fivs 95 (216)
T d1mxsa_ 77 LDRSMFAAVEAAGAQFVVT 95 (216)
T ss_dssp CSHHHHHHHHHHTCSSEEC
T ss_pred ecHHHHHHHHhCCCCEEEC
Confidence 9999999999999997763
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.16 E-value=0.02 Score=52.90 Aligned_cols=62 Identities=23% Similarity=0.283 Sum_probs=46.8
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++|+|.|.|..-. |.+. ...+.++++++.++++||| .|.|.|++.+..+++.|||+|-+|-|
T Consensus 117 ~agvd~ivID~A~----G~s~--------~~~~~i~~ik~~~~~~~iI-aGNV~T~e~a~~L~~aGaD~VkVGiG 178 (365)
T d1zfja1 117 EAGADAIVIDTAH----GHSA--------GVLRKIAEIRAHFPNRTLI-AGNIATAEGARALYDAGVDVVKVGIG 178 (365)
T ss_dssp HHTCSEEEECCSC----TTCH--------HHHHHHHHHHHHCSSSCEE-EEEECSHHHHHHHHHTTCSEEEECSS
T ss_pred HcCCCEEEEECCc----cccc--------chhHHHHHHHhhCCCccee-ecccccHHHHHHHHhcCCceEEeeec
Confidence 6899999986322 2111 1144667777778888887 69999999999999999999988853
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=95.05 E-value=0.096 Score=44.43 Aligned_cols=87 Identities=17% Similarity=0.147 Sum_probs=60.9
Q ss_pred HHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHh
Q 017176 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLR 203 (376)
Q Consensus 124 eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~ 203 (376)
++++.+++. ++..=+|. ++.++..++ .+.+.+.|+..|.|.-|+.. .++.+.++++
T Consensus 6 ~~~~~l~~~---~iipvlr~--~~~~~~~~~----~~al~~~Gi~~iEitl~~~~---------------a~~~I~~l~~ 61 (212)
T d1vhca_ 6 QIIEKLREL---KIVPVIAL--DNADDILPL----ADTLAKNGLSVAEITFRSEA---------------AADAIRLLRA 61 (212)
T ss_dssp HHHHHHHHH---CEEEEECC--SSGGGHHHH----HHHHHHTTCCEEEEETTSTT---------------HHHHHHHHHH
T ss_pred HHHHHHHHC---CEEEEEeC--CCHHHHHHH----HHHHHHCCCCEEEEeCCChh---------------HHHHHHHHHh
Confidence 455555543 33333554 333444333 34455789999999877631 2677888888
Q ss_pred hCCCCeEEEecCCCCHHHHHHHHHcCcCeeEE
Q 017176 204 DFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 235 (376)
Q Consensus 204 ~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vmi 235 (376)
+++++ ++|.|-|.|.++++++.+.||++++-
T Consensus 62 ~~p~~-~vGaGTV~~~~~~~~a~~aGa~FivS 92 (212)
T d1vhca_ 62 NRPDF-LIAAGTVLTAEQVVLAKSSGADFVVT 92 (212)
T ss_dssp HCTTC-EEEEESCCSHHHHHHHHHHTCSEEEC
T ss_pred cCCCc-eEeeeecccHHHHHHHHhhCCcEEEC
Confidence 88884 79999999999999999999998773
|
| >d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.00 E-value=0.097 Score=43.91 Aligned_cols=138 Identities=14% Similarity=0.150 Sum_probs=72.1
Q ss_pred CCCEEEEecCCC-HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017176 64 QHPIVLQIGGSN-LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 64 ~~p~~vQL~g~~-~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
+.++++=+--.| |.....+++.+.++|+|.+.+|+.+.. +.++++++..+.-+...+.
T Consensus 51 ~~~if~DlK~~Di~~t~~~~~~~~~~~gad~~Tvh~~~g~---------------------~~i~~~~~~~~~~~~~~~s 109 (206)
T d2czda1 51 GVEIIADLKLADIPNTNRLIARKVFGAGADYVIVHTFVGR---------------------DSVMAVKELGEIIMVVEMS 109 (206)
T ss_dssp CCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESTTCH---------------------HHHHHHHTTSEEEEECCCC
T ss_pred CCeEEEEeeeeeecccchheehhhccccccEEEeeecccH---------------------HHHHHhhhcccceEEEecc
Confidence 556766654333 566667778888899999999853221 2344444432211111111
Q ss_pred C-C-CCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCCC-C
Q 017176 143 I-G-VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGIN-T 218 (376)
Q Consensus 143 ~-g-~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI~-s 218 (376)
. + .+...++ .+.+.++..+++...+..++.. .+.+..+++... ++.+ ..+||. .
T Consensus 110 ~~~~~~~~~~~---~~~~~~~a~~~~~~g~~~~~~~------------------~~~~~~~r~~~~~~~~i-~~pGI~~~ 167 (206)
T d2czda1 110 HPGALEFINPL---TDRFIEVANEIEPFGVIAPGTR------------------PERIGYIRDRLKEGIKI-LAPGIGAQ 167 (206)
T ss_dssp SGGGGTTTGGG---HHHHHHHHHHHCCSEEECCCSS------------------THHHHHHHHHSCTTCEE-EECCCCSS
T ss_pred CCcccccccHH---HHHHHHHHHhcccccccccccC------------------chhhhhhhhhhcccceE-ECCCcccc
Confidence 0 0 1111122 2222333344565555443321 122344444443 3444 444543 2
Q ss_pred HHHHHHHHHcCcCeeEEchHHhhCCc
Q 017176 219 VDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 219 ~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
..+..++++.|+|.+.+||++...+.
T Consensus 168 ~~~~~~ai~~Gad~iVvGR~I~~a~d 193 (206)
T d2czda1 168 GGKAKDAVKAGADYIIVGRAIYNAPN 193 (206)
T ss_dssp TTHHHHHHHHTCSEEEECHHHHTSSS
T ss_pred CCCHHHHHHhCCCEEEEChhhccCCC
Confidence 34677788889999999999987655
|
| >d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Probab=94.95 E-value=0.33 Score=41.37 Aligned_cols=128 Identities=10% Similarity=0.140 Sum_probs=84.2
Q ss_pred CEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC-ccEEEEecC
Q 017176 66 PIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRI 143 (376)
Q Consensus 66 p~~vQL~-g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~-~pv~vKiR~ 143 (376)
|+...+. ..+++++.+.++.+.+.||+.+-+..|. + .+ .+.++++|+.++ ..+.+-.--
T Consensus 6 ~~~~s~g~~~~~e~~~~~~~~~~~~Gf~~~Kikvg~--------~-------~D----~~~v~~ir~~~~~~~l~vDaN~ 66 (244)
T d1wufa1 6 KVGVSIGLQQNVETLLQLVNQYVDQGYERVKLKIAP--------N-------KD----IQFVEAVRKSFPKLSLMADANS 66 (244)
T ss_dssp EBCEEECCCSCHHHHHHHHHHHHHHTCCEEEEECBT--------T-------BS----HHHHHHHHTTCTTSEEEEECTT
T ss_pred EEeEEeCCCCCHHHHHHHHHHHHHCCCCEEEEEeCC--------c-------HH----HHHHHHHHHhccchhhhhhhhc
Confidence 4444543 3579999999998888899999886541 1 12 356778887763 334443344
Q ss_pred CCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHH
Q 017176 144 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 223 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~ 223 (376)
+|+. ++.. .+. .+++.++.++- . .+++-+++...++++.. ++||.+.-.+.++.++.
T Consensus 67 ~~~~----~~a~-~~~-~l~~~~~~wiE----e------------P~~~~d~~~~~~l~~~~-~~pia~dE~~~~~~~~~ 123 (244)
T d1wufa1 67 AYNR----EDFL-LLK-ELDQYDLEMIE----Q------------PFGTKDFVDHAWLQKQL-KTRICLDENIRSVKDVE 123 (244)
T ss_dssp CCCG----GGHH-HHH-TTGGGTCSEEE----C------------CSCSSCSHHHHHHHTTC-SSEEEECTTCCSHHHHH
T ss_pred cccc----hhhh-hhh-cccccchhhhc----C------------cccccchhhhhcccccc-ccccccCccccchhhhh
Confidence 4543 2332 333 45677777664 1 12222356666776654 89999999999999999
Q ss_pred HHHH-cCcCeeEE
Q 017176 224 AALR-KGAHHVMV 235 (376)
Q Consensus 224 ~~l~-~Gad~Vmi 235 (376)
++++ ..+|.|++
T Consensus 124 ~~i~~~a~d~v~~ 136 (244)
T d1wufa1 124 QAHSIGSCRAINL 136 (244)
T ss_dssp HHHHHTCCSEEEE
T ss_pred hhccccccceeec
Confidence 9999 45799887
|
| >d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: 3-keto-L-gulonate 6-phosphate decarboxylase species: Escherichia coli [TaxId: 562]
Probab=94.65 E-value=0.1 Score=43.28 Aligned_cols=133 Identities=14% Similarity=0.124 Sum_probs=74.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHH
Q 017176 73 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 73 g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~ 152 (376)
+..+..+.+ .+.++|+|.+.+|.-+ | .+.+.++++..++. +..+.+-.-. . .+.+
T Consensus 64 ~d~~~~~~~---~~~~~gad~vtvh~~~-----------g------~~~~~~~~~~~~~~-~~~~~v~~~~-~---~~~~ 118 (213)
T d1q6oa_ 64 ADAGKILSR---MCFEANADWVTVICCA-----------D------INTAKGALDVAKEF-NGDVQIELTG-Y---WTWE 118 (213)
T ss_dssp CSCHHHHHH---HHHHTTCSEEEEETTS-----------C------HHHHHHHHHHHHHT-TCEEEEEECS-C---CCHH
T ss_pred ccchHHHHH---HHHHcCCCEEEEeccC-----------C------chHHHHHHHHHHHc-CCceecccCC-C---CCHH
Confidence 445555444 3457899999998421 1 23455556655543 3333332221 1 1222
Q ss_pred HHHHHHHHHhhcCCccEEEEccCcc-ccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcC
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKA-LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH 231 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~-~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad 231 (376)
... . +.+.|++.+.+|-... ...|.. ..+..++.+.+... .++++...||+ +++++.++++.|||
T Consensus 119 ~~~----~-~~~~~~~~~~~~~~~~~g~~~~~------~~~~~l~~i~~~~~--~~~~i~~~gGi-~~~~~~~~~~~Gad 184 (213)
T d1q6oa_ 119 QAQ----Q-WRDAGIGQVVYHRSRDAQAAGVA------WGEADITAIKRLSD--MGFKVTVTGGL-ALEDLPLFKGIPIH 184 (213)
T ss_dssp HHH----H-HHHTTCCEEEEECCHHHHHTTCC------CCHHHHHHHHHHHH--TTCEEEEESSC-CGGGGGGGTTSCCS
T ss_pred HHH----H-HHHhHHHHHHHHHhcccCcCCee------CCHHHHHHHHHhhc--cCceEecCCCc-CcCCHHHHHHcCCC
Confidence 221 1 2357888888764321 111111 01112344444443 37888888887 58899999999999
Q ss_pred eeEEchHHhhCCc
Q 017176 232 HVMVGRAAYQNPW 244 (376)
Q Consensus 232 ~VmiGRa~l~~P~ 244 (376)
.+.+||++.....
T Consensus 185 ~iVVGr~I~~a~d 197 (213)
T d1q6oa_ 185 VFIAGRSIRDAAS 197 (213)
T ss_dssp EEEESHHHHTSSC
T ss_pred EEEEChhhcCCCC
Confidence 9999999876544
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=94.61 E-value=0.019 Score=53.60 Aligned_cols=63 Identities=22% Similarity=0.308 Sum_probs=47.9
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
.++|+|.|.|..-. |++. ...+.+..+++.++++|| ..|+|.|++.+..+++.|||+|-+|-|
T Consensus 160 ~~aG~D~ivID~Ah----G~s~--------~~~~~i~~ik~~~~~v~v-IaGNV~T~e~a~~L~~~GaD~VkVGiG 222 (388)
T d1eepa_ 160 VKAHVDILVIDSAH----GHST--------RIIELIKKIKTKYPNLDL-IAGNIVTKEAALDLISVGADCLKVGIG 222 (388)
T ss_dssp HHTTCSEEEECCSC----CSSH--------HHHHHHHHHHHHCTTCEE-EEEEECSHHHHHHHHTTTCSEEEECSS
T ss_pred Hhhccceeeeeccc----cchH--------HHHHHHHHHHHHCCCCce-eeccccCHHHHHHHHhcCCCeeeeccc
Confidence 46999999997532 2111 014567777777888886 569999999999999999999988865
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.52 E-value=1.3 Score=38.51 Aligned_cols=156 Identities=10% Similarity=-0.002 Sum_probs=90.8
Q ss_pred cCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEE
Q 017176 60 FSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSV 139 (376)
Q Consensus 60 ~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~v 139 (376)
......|++++..+.+.++..+.++.++++|+|++-+- .|... + -..+.+.+-.++|.+.+++|+.+
T Consensus 72 ~~~~~~~vi~g~~~~s~~~~i~~a~~a~~~Gad~v~i~--~P~~~--~---------~~~~~l~~~~~~v~~~~~~pi~l 138 (296)
T d1xxxa1 72 AVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVV--TPYYS--K---------PPQRGLQAHFTAVADATELPMLL 138 (296)
T ss_dssp HHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEE--CCCSS--C---------CCHHHHHHHHHHHHTTCSSCEEE
T ss_pred HhccccceEeccccchhHHHHHHHHHHHHhcCCeEEEE--eccCC--C---------CCHHHHHHHHHHHHHhcCCCEEE
Confidence 34556799999999999999999999999999999774 23321 1 12466888888998889999988
Q ss_pred EecCCCCCC-ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCC
Q 017176 140 KCRIGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 218 (376)
Q Consensus 140 KiR~g~~~~-~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s 218 (376)
--.+++... -+. +++ .++.+.-.+..|--+.. ++..+.+.... ..+-+ .+|+ +
T Consensus 139 Yn~p~~~g~~~~~-~~~---~~L~~~p~i~giK~~s~------------------d~~~~~~~~~~-~~~~~-~~g~--~ 192 (296)
T d1xxxa1 139 YDIPGRSAVPIEP-DTI---RALASHPNIVGVKDAKA------------------DLHSGAQIMAD-TGLAY-YSGD--D 192 (296)
T ss_dssp EECHHHHSSCCCH-HHH---HHHHTSTTEEEEEECSC------------------CHHHHHHHHHH-HCCEE-EECS--G
T ss_pred EECccccCCCCCH-HHH---HHhcCCCCeeeeccccc------------------cHHHHHhhhcc-ccccc-ccCc--c
Confidence 533321111 122 222 33333333443332111 13333333332 13333 3343 1
Q ss_pred HHHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhC
Q 017176 219 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256 (376)
Q Consensus 219 ~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 256 (376)
+.+...+..||+|.+.|-+.+. |+++.+.++....|
T Consensus 193 -~~~~~~~~~G~~G~is~~~n~~-P~~~~~i~~~~~~g 228 (296)
T d1xxxa1 193 -ALNLPWLAMGATGFISVIAHLA-AGQLRELLSAFGSG 228 (296)
T ss_dssp -GGHHHHHHHTCCEEEESTHHHH-HHHHHHHHHHHHTT
T ss_pred -cccchhhhcccccccchhccch-hHHHHHHHhhccch
Confidence 2344556679999999987643 55544444433344
|
| >d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Putative aldolase YihT species: Salmonella typhimurium [TaxId: 90371]
Probab=94.47 E-value=0.21 Score=44.18 Aligned_cols=138 Identities=13% Similarity=0.045 Sum_probs=73.6
Q ss_pred HHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC---CCCCCccHHHHHHHHHH
Q 017176 84 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI---GVDDHDSYNQLCDFIYK 160 (376)
Q Consensus 84 ~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~---g~~~~~~~~~~~~~i~~ 160 (376)
+.+.+.|.|+|-+.+-.. .+. .. ....+++.++.++.+ ..++|+.+-+=. ...+..+.++.+....+
T Consensus 113 ~~a~~~GadaVk~lv~~~------~d~-~~--e~~~~~~~~l~~~c~-~~glp~llE~l~~~~~~~~~~~~~~~i~~a~r 182 (291)
T d1to3a_ 113 QAVKRDGAKALKLLVLWR------SDE-DA--QQRLNMVKEFNELCH-SNGLLSIIEPVVRPPRCGDKFDREQAIIDAAK 182 (291)
T ss_dssp HHHHHTTCCEEEEEEEEC------TTS-CH--HHHHHHHHHHHHHHH-TTTCEEEEEEEECCCSSCSCCCHHHHHHHHHH
T ss_pred HHHHhccCceEEEEEeeC------Ccc-cH--HHHHHHHHHHHHHHH-HcCCcceEEEEecCCCcccccchHHHHHHHHH
Confidence 446678999998864211 111 00 111233444444433 458888775422 22232333443333455
Q ss_pred HhhcCCccEEEEcc-CccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCe-EEEecCCCCHHHHHHHH----HcCcCeeE
Q 017176 161 VSSLSPTRHFIIHS-RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLT-FTLNGGINTVDEVNAAL----RKGAHHVM 234 (376)
Q Consensus 161 ~~e~~Gvd~I~vh~-r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ip-Vi~nGgI~s~~da~~~l----~~Gad~Vm 234 (376)
.+.+.|+|.+-+-- +.. .+ .. ........++... ..+| |+..||. +.++..+.+ +.||.|+.
T Consensus 183 ~~~e~GaDi~K~~~p~~~--~~---~~-----~~~~~~~~~~~~~-~~~p~vvLs~G~-~~~~f~~~l~~A~~aGa~G~~ 250 (291)
T d1to3a_ 183 ELGDSGADLYKVEMPLYG--KG---AR-----SDLLTASQRLNGH-INMPWVILSSGV-DEKLFPRAVRVAMEAGASGFL 250 (291)
T ss_dssp HHTTSSCSEEEECCGGGG--CS---CH-----HHHHHHHHHHHHT-CCSCEEECCTTS-CTTTHHHHHHHHHHTTCCEEE
T ss_pred HHHhcCCcEEEEecCCCc--hh---hh-----HHHHHHHHHHhhc-CCCcEEEEeCCC-CHHHHHHHHHHHHHCCCeEEE
Confidence 66679999887642 110 00 00 0012223344443 3788 5667776 455555443 47999999
Q ss_pred EchHHhhCC
Q 017176 235 VGRAAYQNP 243 (376)
Q Consensus 235 iGRa~l~~P 243 (376)
+||.+..+|
T Consensus 251 ~GR~iw~~~ 259 (291)
T d1to3a_ 251 AGRAVWSSV 259 (291)
T ss_dssp ESHHHHGGG
T ss_pred eChhhhhCc
Confidence 999999887
|
| >d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Type I 3-dehydroquinate dehydratase species: Salmonella typhi [TaxId: 90370]
Probab=94.40 E-value=0.93 Score=38.97 Aligned_cols=146 Identities=10% Similarity=0.069 Sum_probs=89.8
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEe
Q 017176 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKC 141 (376)
Q Consensus 63 ~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKi 141 (376)
.-.++++-|.+.+.+++.+.++.+.+.|+|.||+=..+=. + ..+.+.+.++++.+++.. ++|+.+-+
T Consensus 14 g~pkIcv~l~~~~~~~~~~~~~~~~~~~aD~vE~RlD~l~------~------~~~~~~l~~~~~~lr~~~~~~PiI~T~ 81 (252)
T d1gqna_ 14 GMPKIIVSLMGRDINSVKAEALAYREATFDILEWRVDHFM------D------IASTQSVLTAARVIRDAMPDIPLLFTF 81 (252)
T ss_dssp SSCEEEEEECCSSHHHHHHHHHHHTTSCCSEEEEEGGGCS------C------TTCHHHHHHHHHHHHHHCTTSCEEEEC
T ss_pred CCCEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEEcccc------c------cCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 3345889999999999999999999999999999543210 0 135678899999998876 58999988
Q ss_pred cCCCCCC---ccHHHHHHHHHHHhhcCC-ccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecC--
Q 017176 142 RIGVDDH---DSYNQLCDFIYKVSSLSP-TRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG-- 215 (376)
Q Consensus 142 R~g~~~~---~~~~~~~~~i~~~~e~~G-vd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGg-- 215 (376)
|..++.. .+-++-.+++..++ +.| +|+|.|--.... .....+.+..+. .++.||++=-
T Consensus 82 R~~~eGG~~~~~~~~~~~ll~~~~-~~~~~d~iDiEl~~~~--------------~~~~~li~~a~~-~~~~vI~S~Hdf 145 (252)
T d1gqna_ 82 RSAKEGGEQTITTQHYLTLNRAAI-DSGLVDMIDLELFTGD--------------ADVKATVDYAHA-HNVYVVMSNHDF 145 (252)
T ss_dssp CBGGGTCSBCCCHHHHHHHHHHHH-HHSCCSEEEEEGGGCH--------------HHHHHHHHHHHH-TTCEEEEEEEES
T ss_pred echhhCCCCCCCHHHHHHHHHHHH-HcCCCceEeccccccH--------------HHHHHHHHHhhc-CCCeEEEEecCC
Confidence 8754321 11223334444444 356 899998743210 001112222233 3677777632
Q ss_pred --CCCHHHHHHHH----HcCcCeeEEc
Q 017176 216 --INTVDEVNAAL----RKGAHHVMVG 236 (376)
Q Consensus 216 --I~s~~da~~~l----~~Gad~VmiG 236 (376)
--+.+++.+.+ +.|||.|=++
T Consensus 146 ~~TP~~~~l~~~~~~m~~~gaDivKia 172 (252)
T d1gqna_ 146 HQTPSAEEMVSRLRKMQALGADIPKIA 172 (252)
T ss_dssp SCCCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 33445554443 3688877554
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=94.37 E-value=0.13 Score=45.40 Aligned_cols=145 Identities=13% Similarity=0.118 Sum_probs=77.7
Q ss_pred HHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHH
Q 017176 81 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 160 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~ 160 (376)
-.|+.++++||+++=+....=.......|. | + -..+.+.+.++.|.+.+++||++-+-.|+.+..++.++++
T Consensus 27 ~SAr~~e~aGf~a~~~ss~~~aas~G~pD~-~--~-lt~~e~~~~~~~I~~~~~lPv~~D~d~GyG~~~~v~~tv~---- 98 (275)
T d1s2wa_ 27 LSARIVQEAGFKGIWGSGLSVSAQLGVRDS-N--E-ASWTQVVEVLEFMSDASDVPILLDADTGYGNFNNARRLVR---- 98 (275)
T ss_dssp HHHHHHHHHTCSCEEECCHHHHHTC-------------CHHHHHHHHHHHHTCSSCEEEECCSSCSSHHHHHHHHH----
T ss_pred HHHHHHHHcCCCEEEhhHHHHHHHcCCCCC-C--c-cchhhHHHHHHhhhcccCCceeEecccccccchHHHHHHH----
Confidence 467888889999987742100000011221 1 2 2345677888888888999999999999865444444433
Q ss_pred HhhcCCccEEEEccCcc-ccCCCCCCCCCCCCccc-HHHH---HHHHh--hCCCCeEEEecCCC----CHHHHH-H---H
Q 017176 161 VSSLSPTRHFIIHSRKA-LLNGISPAENRTIPPLK-YEYY---YALLR--DFPDLTFTLNGGIN----TVDEVN-A---A 225 (376)
Q Consensus 161 ~~e~~Gvd~I~vh~r~~-~~~g~~~~~~~~~~~~~-~~~v---~~~~~--~~~~ipVi~nGgI~----s~~da~-~---~ 225 (376)
.++++|+..|++--.+. ...++. .+....... -+.+ ...++ ..+++-|++--|-. ..+++. + .
T Consensus 99 ~~~~aGaagi~iEDq~~pk~~~~~--~~~~~~~~~~~~~~~ki~aa~~~~~~~~~~i~ARtDa~~~~~gl~eai~R~~aY 176 (275)
T d1s2wa_ 99 KLEDRGVAGACLEDKLFPKTNSLH--DGRAQPLADIEEFALKIKACKDSQTDPDFCIVARVEAFIAGWGLDEALKRAEAY 176 (275)
T ss_dssp HHHHTTCCEEEEECBCC----------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTTTCCHHHHHHHHHHH
T ss_pred HHHHhccceeEeeccccccccccc--cccccccccHHHHHHHHHhhhhhccCcceeEEecchhhhhcCCHHHHHHHHHHH
Confidence 35679999999964321 101110 001111111 1222 22222 22466677777653 244443 2 2
Q ss_pred HHcCcCeeEE
Q 017176 226 LRKGAHHVMV 235 (376)
Q Consensus 226 l~~Gad~Vmi 235 (376)
.+.|||+|++
T Consensus 177 ~eAGAD~vf~ 186 (275)
T d1s2wa_ 177 RNAGADAILM 186 (275)
T ss_dssp HHTTCSEEEE
T ss_pred HhcCCCeeee
Confidence 3479999997
|
| >d1sjda1 c.1.11.2 (A:126-367) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Amycolatopsis sp. [TaxId: 37632]
Probab=94.34 E-value=0.53 Score=39.90 Aligned_cols=128 Identities=13% Similarity=0.093 Sum_probs=85.8
Q ss_pred CEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEec
Q 017176 66 PIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCR 142 (376)
Q Consensus 66 p~~vQL~-g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR 142 (376)
|+-..+. +.+++++.+.++...+.||..+-|..| | ..|. +.++++++.+ +..+.+-.-
T Consensus 6 pvy~s~g~~~~~~~~~~~~~~~~~~Gf~~~Kikvg-~--------------~~Di----~~i~~ir~~~g~~~~l~vDaN 66 (242)
T d1sjda1 6 PCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIE-P--------------GWDV----EPVRAVRERFGDDVLLQVDAN 66 (242)
T ss_dssp EBEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECB-T--------------TBSH----HHHHHHHHHHCTTSEEEEECT
T ss_pred EeeEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECC-c--------------hhHH----HHHHHHHHHhCCCeeEeeccc
Confidence 4555554 458999999999888889999988643 1 1233 4455566554 445666555
Q ss_pred CCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHH
Q 017176 143 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 222 (376)
Q Consensus 143 ~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da 222 (376)
-+|+.. +.++ +++ +++.++.+|- . .+++-++..++++.+.. ++||.+.-.+.+..+.
T Consensus 67 ~~~~~~----~a~~-~~~-l~~~~~~~iE----e------------P~~~~d~~~~~~l~~~~-~~pia~gE~~~~~~~~ 123 (242)
T d1sjda1 67 TAYTLG----DAPQ-LAR-LDPFGLLLIE----Q------------PLEEEDVLGHAELARRI-QTPICLDESIVSARAA 123 (242)
T ss_dssp TCCCGG----GHHH-HHT-TGGGCCSEEE----C------------CSCTTCHHHHHHHHTTC-SSCEEESTTCCSHHHH
T ss_pred cccchh----hhhH-Hhh-hhhhhhHHHH----h------------hhhhhhHHHHHHHHhcc-Ccccccccccccchhh
Confidence 556542 3333 344 5677887765 1 12223366677777654 8999988899999999
Q ss_pred HHHHHc-CcCeeEE
Q 017176 223 NAALRK-GAHHVMV 235 (376)
Q Consensus 223 ~~~l~~-Gad~Vmi 235 (376)
.++++. .+|.+++
T Consensus 124 ~~~~~~~~~d~~~~ 137 (242)
T d1sjda1 124 ADAIKLGAVQIVNI 137 (242)
T ss_dssp HHHHHTTCCSEEEE
T ss_pred hhhhhcCccCEEEe
Confidence 999995 4899988
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.21 E-value=0.035 Score=51.54 Aligned_cols=102 Identities=17% Similarity=0.321 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHhcccCccEEEE---------ecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCC
Q 017176 118 DPKFVGEAMSVIAANTNVPVSVK---------CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR 188 (376)
Q Consensus 118 ~~~~~~eiv~~v~~~~~~pv~vK---------iR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~ 188 (376)
.++...+-++.+++....|...+ ..+|..+ + ..+. ..++.++|++.+.++.-... +.
T Consensus 80 ~~e~~~~ev~~v~~~~~~p~~~~~~~~~l~v~aavg~~~-~-~~~~----~~~l~~agv~vi~id~a~g~----~~---- 145 (378)
T d1jr1a1 80 TPEFQANEVRKVKKYEQYPLASKDAKKQLLCGAAIGTHE-D-DKYR----LDLLALAGVDVVVLDSSQGN----SI---- 145 (378)
T ss_dssp CHHHHHHHHHHHHTSCCCTTCCBCTTSCBCCEEEECSST-H-HHHH----HHHHHHHTCCEEEECCSSCC----SH----
T ss_pred CHHHHHHHHheehhhhhCcccccccccCEEEEEEeccCH-H-HHHH----HHHHHhhccceEeeeccCcc----ch----
Confidence 56666667777776554443322 1223322 1 1111 22344689999999865321 10
Q ss_pred CCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 189 TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 189 ~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
...+.+..+++..+++||| .|.|.|++.+..+++.|||+|-+|-|
T Consensus 146 ----~~~~~i~~ik~~~~~~~iI-aGnVaT~e~a~~L~~aGAD~VkVGiG 190 (378)
T d1jr1a1 146 ----FQINMIKYMKEKYPNLQVI-GGNVVTAAQAKNLIDAGVDALRVGMG 190 (378)
T ss_dssp ----HHHHHHHHHHHHSTTCEEE-EEEECSHHHHHHHHHHTCSEEEECSS
T ss_pred ----hhHHHHHHHHHHCCCCcee-ecccccHHHHHHHHHhCCCEEeeccc
Confidence 0134556666677788776 89999999999999999999988765
|
| >d1r0ma1 c.1.11.2 (A:133-375) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Deinococcus radiodurans [TaxId: 1299]
Probab=94.20 E-value=0.43 Score=40.62 Aligned_cols=128 Identities=10% Similarity=0.112 Sum_probs=82.6
Q ss_pred CEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecC
Q 017176 66 PIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRI 143 (376)
Q Consensus 66 p~~vQL~-g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~ 143 (376)
|+...+. ..+++.+.+.++.+.+.||+.+-|..| | + .|. +.++++|+.+ +..+.+-.--
T Consensus 6 ~~y~s~g~~~~~e~~~~~~~~~~~~G~~~~KiKvg-~----------~----~D~----~~v~~ir~~~~d~~l~vD~n~ 66 (243)
T d1r0ma1 6 EVGVSLGIQADEQATVDLVRRHVEQGYRRIKLKIK-P----------G----WDV----QPVRATREAFPDIRLTVDANS 66 (243)
T ss_dssp EBCEEECCCSSHHHHHHHHHHHHHTTCSCEEEECB-T----------T----BSH----HHHHHHHHHCTTSCEEEECTT
T ss_pred EeeeEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcC-c----------c----hhH----HHHHHHHHhccCceEEEeccc
Confidence 3334443 468999999999998889999987542 1 1 233 3455566654 4445555555
Q ss_pred CCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHH
Q 017176 144 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 223 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~ 223 (376)
+|+.. +..+ + +.+++.++.+|- ..+++-+++...++++.. ++||.+.-.+.+..++.
T Consensus 67 ~~~~~----~a~~-~-~~l~~~~~~~iE----------------eP~~~~d~~~~~~l~~~~-~ipia~gE~~~~~~~~~ 123 (243)
T d1r0ma1 67 AYTLA----DAGR-L-RQLDEYDLTYIE----------------QPLAWDDLVDHAELARRI-RTPLCLDESVASASDAR 123 (243)
T ss_dssp CCCGG----GHHH-H-HTTGGGCCSCEE----------------CCSCTTCSHHHHHHHHHC-SSCEEESTTCCSHHHHH
T ss_pred cCchH----HHHH-h-hhhhhccchhhh----------------hhccccchHHHHHHhhcC-Ccccccccchhhhhhhh
Confidence 56542 2222 2 234566776654 011222356667777765 89999999999999999
Q ss_pred HHHH-cCcCeeEE
Q 017176 224 AALR-KGAHHVMV 235 (376)
Q Consensus 224 ~~l~-~Gad~Vmi 235 (376)
++++ ..+|.|++
T Consensus 124 ~~i~~~~~d~v~~ 136 (243)
T d1r0ma1 124 KALALGAGGVINL 136 (243)
T ss_dssp HHHHHTSCSEEEE
T ss_pred hhhhcccccceec
Confidence 9998 56899887
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=94.15 E-value=0.12 Score=45.08 Aligned_cols=71 Identities=11% Similarity=-0.023 Sum_probs=57.4
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.+++.|+++|.|-.-....+|. ++.+..+++.+ ++||+----|.++-++.++...|||+|.+--+
T Consensus 71 A~~y~~~GA~aiSVLTe~~~F~Gs------------~~dl~~v~~~~-~iPvLrKDFIid~~QI~ea~~~GADaVLLIaa 137 (254)
T d1vc4a_ 71 ALAYARGGARAVSVLTEPHRFGGS------------LLDLKRVREAV-DLPLLRKDFVVDPFMLEEARAFGASAALLIVA 137 (254)
T ss_dssp HHHHHHTTCSEEEEECCCSSSCCC------------HHHHHHHHHHC-CSCEEEESCCCSHHHHHHHHHTTCSEEEEEHH
T ss_pred HHHHHhcCCceEEEEcCccccccc------------HHHHHHHHHHc-CCCcccCCccccHHHHHHHHhccchHHHHHHH
Confidence 556778999999998754443442 67777776654 99999999999999999999999999998877
Q ss_pred HhhC
Q 017176 239 AYQN 242 (376)
Q Consensus 239 ~l~~ 242 (376)
++.+
T Consensus 138 ll~~ 141 (254)
T d1vc4a_ 138 LLGE 141 (254)
T ss_dssp HHGG
T ss_pred HHHH
Confidence 6654
|
| >d2gdqa1 c.1.11.2 (A:119-374) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein YitF species: Bacillus subtilis [TaxId: 1423]
Probab=93.80 E-value=0.65 Score=39.84 Aligned_cols=121 Identities=9% Similarity=0.057 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHHHH
Q 017176 77 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQL 154 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~~~ 154 (376)
+++.+-++.+.+.||+.+-|..| | .+++.-.+.|+++|+.+ +.++.|-.--+|+ .++.
T Consensus 23 ~~~~~~~~~~~~~Gf~~~Kikvg------------~----~~~~~di~~v~avr~~~G~~~~l~vDan~~~~----~~~A 82 (256)
T d2gdqa1 23 SRSVSNVEAQLKKGFEQIKVKIG------------G----TSFKEDVRHINALQHTAGSSITMILDANQSYD----AAAA 82 (256)
T ss_dssp HHHHHHHHHHHTTTCCEEEEECS------------S----SCHHHHHHHHHHHHHHHCTTSEEEEECTTCCC----HHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEECC------------C----CCHHHHHHHHHHHHHHcCCCeEEeeccccCCC----HHHH
Confidence 44555556666789999988543 1 23455567778888776 4567666665664 3444
Q ss_pred HHHHHHHhhc-CCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCe
Q 017176 155 CDFIYKVSSL-SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHH 232 (376)
Q Consensus 155 ~~~i~~~~e~-~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~ 232 (376)
++++. .+++ .++.++.= .+++-++..++++++.. ++||.+.=.+.+.++..++++ ..+|.
T Consensus 83 ~~~~~-~l~~~~~i~~~Ee----------------P~~~~d~~~~~~l~~~~-~ipIa~gE~~~~~~~~~~~i~~~a~di 144 (256)
T d2gdqa1 83 FKWER-YFSEWTNIGWLEE----------------PLPFDQPQDYAMLRSRL-SVPVAGGENMKGPAQYVPLLSQRCLDI 144 (256)
T ss_dssp HTTHH-HHTTCSCEEEEEC----------------CSCSSCHHHHHHHHTTC-SSCEEECTTCCSHHHHHHHHHTTCCSE
T ss_pred HHHHH-HHhhcCceeEecc----------------ccccchHHHHHHHhhcc-cceeecCccccchhhHHHHHHhhccee
Confidence 44433 3444 35655540 12223466677777654 899887778999999999998 55787
Q ss_pred eEE
Q 017176 233 VMV 235 (376)
Q Consensus 233 Vmi 235 (376)
|++
T Consensus 145 ~~~ 147 (256)
T d2gdqa1 145 IQP 147 (256)
T ss_dssp ECC
T ss_pred eec
Confidence 765
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=93.67 E-value=0.12 Score=46.88 Aligned_cols=98 Identities=21% Similarity=0.335 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHH
Q 017176 118 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 197 (376)
Q Consensus 118 ~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~ 197 (376)
.++...+.++.+++. ..++.+-+ |+.. +.. +.+ ..+. ++|+|.|+|+.-. |++. ...+.
T Consensus 71 ~~e~~~~~i~~vk~~-~~~v~~~v--gv~~-~~~-e~~---~~li-~agvd~ivId~A~----G~~~--------~~~~~ 129 (330)
T d1vrda1 71 TPDEQARQVSIVKKT-RLLVGAAV--GTSP-ETM-ERV---EKLV-KAGVDVIVIDTAH----GHSR--------RVIET 129 (330)
T ss_dssp CHHHHHHHHHHHHTC-CBCCEEEE--CSST-THH-HHH---HHHH-HTTCSEEEECCSC----CSSH--------HHHHH
T ss_pred chhhhHHHHHHHhhh-ccEEEEEE--ecCH-HHH-HHH---HHHH-HCCCCEEEEecCC----CCch--------hHHHH
Confidence 466666677777653 22333322 3332 222 222 2233 5899999986422 1110 01355
Q ss_pred HHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEch
Q 017176 198 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 198 v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGR 237 (376)
+..+++..+++|| ..|.|.|++.++.+++.|||+|-+|-
T Consensus 130 ik~ik~~~~~~~v-iaGnV~t~~~a~~l~~~GaD~v~VGi 168 (330)
T d1vrda1 130 LEMIKADYPDLPV-VAGNVATPEGTEALIKAGADAVKVGV 168 (330)
T ss_dssp HHHHHHHCTTSCE-EEEEECSHHHHHHHHHTTCSEEEECS
T ss_pred HHHHHHhCCCCCE-EeechhHHHHHHHHHHcCCCEEeecc
Confidence 6677777778875 45889999999999999999998864
|
| >d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Neisseria meningitidis [TaxId: 487]
Probab=93.42 E-value=0.49 Score=41.09 Aligned_cols=155 Identities=10% Similarity=0.016 Sum_probs=87.5
Q ss_pred CCChHHHHHHHHHhCCCcEEEecceeecccccccchh-----hhhh------ccCCCCCCEEEEe-c---CCCHHHHHHH
Q 017176 18 DWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNL-----DRFL------AFSPEQHPIVLQI-G---GSNLDNLAKA 82 (376)
Q Consensus 18 ~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~-----~~~~------~~~~~~~p~~vQL-~---g~~~~~~~~a 82 (376)
+.-|.++..++.+.| ++++.++-....- ..+.+++ +.++ .......-+++.+ + ....++..++
T Consensus 21 Tayd~~~A~~ae~ag-iDiilVGDSlgm~-~~G~~~T~~vt~d~mi~h~~aV~rga~~~~~i~dmPf~sy~~~~~~~~~a 98 (260)
T d1o66a_ 21 TAYESSFAALMDDAG-VEMLLVGDSLGMA-VQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAYQQSKEQAFAA 98 (260)
T ss_dssp ECCSHHHHHHHHHTT-CCEEEECTTHHHH-TTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCTTSSSSCHHHHHHH
T ss_pred eCCCHHHHHHHHHcC-CCEEEEcCCchhe-ecCCCCccccchhhhhhhhHHHHccCcceeeecchhhhhhcchhHHHHHH
Confidence 456899999998886 8988775322111 1111111 1111 1111223344444 2 3567888889
Q ss_pred HHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCC-----CC----C---Ccc
Q 017176 83 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG-----VD----D---HDS 150 (376)
Q Consensus 83 a~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g-----~~----~---~~~ 150 (376)
+.++.++|+|+|-+-.|. ...++++++.+ .++||.--+.+- |. - ..+
T Consensus 99 ~~~~~~~gadavk~eg~~--------------------~~~~~i~~l~~-~gIPV~gHiGl~Pq~~~~~gG~r~~Gk~~e 157 (260)
T d1o66a_ 99 AAELMAAGAHMVKLEGGV--------------------WMAETTEFLQM-RGIPVCAHIGLTPQSVFAFGGYKVQGRGGK 157 (260)
T ss_dssp HHHHHHTTCSEEEEECSG--------------------GGHHHHHHHHH-TTCCEEEEEESCGGGTTC-----------C
T ss_pred HHHHHHhhhhhccccchh--------------------hhhHHHHHHHH-cCCeeEeecccccchheecCcceeccccch
Confidence 888889999999775321 12345555554 378887554331 11 0 012
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecC
Q 017176 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 215 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGg 215 (376)
..++.+. ++.+|++|+..|.+.+-. -+...++.++ .+||+|+-|.
T Consensus 158 ~~~l~~~-a~~le~AGa~~ivlE~Vp------------------~~va~~It~~-~~iptIgIGa 202 (260)
T d1o66a_ 158 AQALLND-AKAHDDAGAAVVLMECVL------------------AELAKKVTET-VSCPTIGIGA 202 (260)
T ss_dssp HHHHHHH-HHHHHHTTCSEEEEESCC------------------HHHHHHHHHH-CSSCEEEESS
T ss_pred hHHHHHH-HHHHHHhhhhehhhhhcc------------------HHHHHHHHhh-hcceeeeccC
Confidence 2344443 566799999999987532 2333455555 4999998774
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=93.34 E-value=2.2 Score=36.84 Aligned_cols=149 Identities=14% Similarity=0.082 Sum_probs=89.2
Q ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEE
Q 017176 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 140 (376)
Q Consensus 61 ~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vK 140 (376)
.....|++++..+.+.++..+.++.++++|+|+|-+- .|.-. . ...+.+.+-.++|.+.+++|+.+-
T Consensus 69 ~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~ilv~--pP~~~-------~----~s~~~i~~~~~~v~~~~~~pi~iY 135 (292)
T d1xkya1 69 VDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLV--APYYN-------K----PSQEGMYQHFKAIAESTPLPVMLY 135 (292)
T ss_dssp HTTSSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEE--CCCSS-------C----CCHHHHHHHHHHHHHTCSSCEEEE
T ss_pred hCCCceEEEecCcccHHHHHHHHHHHHHcCCCEEEEC--CCCCC-------C----CCHHHHHHHHHHHhccCCCcEEEE
Confidence 3456799999999999999999999999999999884 44321 1 234667888888888889999885
Q ss_pred ecC---CCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCC
Q 017176 141 CRI---GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGI 216 (376)
Q Consensus 141 iR~---g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI 216 (376)
--+ |.. -+. ++ +.++.+.-.+..|--++.. ......+.+... +..|+ .|+=
T Consensus 136 n~P~~~~~~--~~~-~~---~~~l~~~p~v~giK~~~~~------------------~~~~~~~~~~~~~~~~v~-~G~~ 190 (292)
T d1xkya1 136 NVPGRSIVQ--ISV-DT---VVRLSEIENIVAIKDAGGD------------------VLTMTEIIEKTADDFAVY-SGDD 190 (292)
T ss_dssp ECHHHHSSC--CCH-HH---HHHHHTSTTEEEEEECSSC------------------HHHHHHHHHHSCTTCEEE-ESSG
T ss_pred eCCcccCCc--cCH-HH---HhhhccCCCEEEEeccccc------------------hhhhheeeeecCCCCEEE-ECCc
Confidence 322 222 122 22 2333333344333322111 233334433333 44444 3332
Q ss_pred CCHHHHHHHHHcCcCeeEEchHHhhCCchhhHhhh
Q 017176 217 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 251 (376)
Q Consensus 217 ~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~ 251 (376)
......+..|++|++.|-+-+. |.++.+.++
T Consensus 191 ---~~~~~~~~~G~~G~~~~~~n~~-p~~~~~l~~ 221 (292)
T d1xkya1 191 ---GLTLPAMAVGAKGIVSVASHVI-GNEMQEMIA 221 (292)
T ss_dssp ---GGHHHHHHTTCCEEEESTHHHH-HHHHHHHHH
T ss_pred ---cccchHHHcCCCccccchhhHH-HHHHHHHHH
Confidence 2234456689999999977543 555433333
|
| >d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.24 E-value=0.43 Score=39.93 Aligned_cols=143 Identities=14% Similarity=0.093 Sum_probs=75.4
Q ss_pred CCEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC
Q 017176 65 HPIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 143 (376)
Q Consensus 65 ~p~~vQL~-g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~ 143 (376)
.+++.=+- +--+......++.+.++|+|.+.+|+.++. +-+...++...+ .+..+.+=..+
T Consensus 55 ~~i~~D~K~~DIg~t~~~~~~~~~~~gad~~TVh~~~g~-----------------~~i~~~~~~a~~-~~~~~~~l~~~ 116 (212)
T d1km4a_ 55 CRIIADFAVADIPETNEKICRATFKAGADAIIVHGFPGA-----------------DSVRACLNVAEE-MGREVFLLTEM 116 (212)
T ss_dssp CEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESTTCH-----------------HHHHHHHHHHHH-HTCEEEEECSC
T ss_pred cceehhhhhhccccHHHHhHhhhccccccEEEEeccCCh-----------------HHHHHHHHHHHh-cCCccccchhh
Confidence 35554432 333555566677777899999999964332 223333443332 22233332222
Q ss_pred CCCC-CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHH-H
Q 017176 144 GVDD-HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVD-E 221 (376)
Q Consensus 144 g~~~-~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~-d 221 (376)
.-.. ....+...+.+.++..+.|++.+.+-... .+.+..+++..++-.++..+||.... +
T Consensus 117 s~~~~~~~~~~~~~~~~~~~~~~g~~g~v~~~~~------------------~~~i~~ir~~~~~~~~~vtpGI~~~g~~ 178 (212)
T d1km4a_ 117 SHPGAEMFIQGAADEIARMGVDLGVKNYVGPSTR------------------PERLSRLREIIGQDSFLISPGVGAQGGD 178 (212)
T ss_dssp SSGGGGTTHHHHHHHHHHHHHHHTCCEEECCTTC------------------HHHHHHHHHHHCSSSEEEECCBSTTSBC
T ss_pred cchhhhhhhhhHHHHHHHHHHHhCCccccccccC------------------HHHHhhhhhccCCceeEEcCccccCCCC
Confidence 1111 11133334445556567788766532111 23344555544455677889996321 2
Q ss_pred HHHHHHcCcCeeEEchHHhhCCc
Q 017176 222 VNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 222 a~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
..+.+ .++|.+.+||+....+.
T Consensus 179 ~~d~~-~~ad~iIvGR~I~~a~d 200 (212)
T d1km4a_ 179 PGETL-RFADAIIVGRSIYLADN 200 (212)
T ss_dssp HHHHT-TTCSEEEECHHHHTSSS
T ss_pred HHHHH-hhCCEEEECchhccCCC
Confidence 22233 47999999999986554
|
| >d1wuea1 c.1.11.2 (A:1127-1367) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Enterococcus faecalis [TaxId: 1351]
Probab=92.93 E-value=1.2 Score=37.53 Aligned_cols=129 Identities=18% Similarity=0.298 Sum_probs=81.4
Q ss_pred CEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecC
Q 017176 66 PIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRI 143 (376)
Q Consensus 66 p~~vQL~-g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~ 143 (376)
|+.+.+. ..+++++.+.++.+.+.||+.+-|..| | + .+.+ .++++|+.+ +..+.+-.--
T Consensus 6 pv~~s~g~~~~~~~~~~~~~~~~~~G~~~~Kikvg-~----------~----~D~~----~v~~ir~~~~d~~l~vDaN~ 66 (241)
T d1wuea1 6 PVGISLGIQEDLPQLLKQVQLAVEKGYQRVKLKIR-P----------G----YDVE----PVALIRQHFPNLPLMVDANS 66 (241)
T ss_dssp ECCEEECCCSCHHHHHHHHHHHHHTTCSCEEEECB-T----------T----BSHH----HHHHHHHHCTTSCEEEECTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEEEcC-c----------c----HHHH----HHHHHHHhccccceeecccc
Confidence 4444442 357888888888888899999988653 1 1 2333 345555544 4445554444
Q ss_pred CCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHH
Q 017176 144 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 223 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~ 223 (376)
+|+. . +..+ +.+ +++.++.+|- . .+++-+++.+.++++.. ++||.+.-.+.+..++.
T Consensus 67 ~~~~-~---~a~~-~~~-~~~~~i~~iE----e------------P~~~~~~~~~~~l~~~~-~~pIa~gE~~~~~~~~~ 123 (241)
T d1wuea1 67 AYTL-A---DLPQ-LQR-LDHYQLAMIE----Q------------PFAADDFLDHAQLQREL-KTRICLDENIRSLKDCQ 123 (241)
T ss_dssp CCCG-G---GHHH-HHG-GGGSCCSCEE----C------------CSCTTCSHHHHHHHTTC-SSCEEECTTCCSHHHHH
T ss_pred cCCH-H---Hhhh-hhh-hhhhhhhhhc----C------------cccccchhhhhhhhccc-ccccccCcccccchhhh
Confidence 5543 2 3332 333 3456666544 0 11222356667776654 89999999999999999
Q ss_pred HHHH-cCcCeeEEc
Q 017176 224 AALR-KGAHHVMVG 236 (376)
Q Consensus 224 ~~l~-~Gad~VmiG 236 (376)
.+++ ..+|.+++-
T Consensus 124 ~~i~~~~~d~i~~d 137 (241)
T d1wuea1 124 VALALGSCRSINLK 137 (241)
T ss_dssp HHHHHTCCSEEEEC
T ss_pred hhhhhhhhhhhccc
Confidence 9999 458999873
|
| >d1v5xa_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Thermus thermophilus [TaxId: 274]
Probab=92.82 E-value=2.1 Score=35.13 Aligned_cols=174 Identities=11% Similarity=0.061 Sum_probs=95.2
Q ss_pred CCCChHHHHHHHHHhCCCcEEEecceeecccccc--cchhhhhhccCCCCCCEEEEecCC-CHHHHHHHHHHHHHCCCCE
Q 017176 17 MDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ--QGNLDRFLAFSPEQHPIVLQIGGS-NLDNLAKATELANAYNYDE 93 (376)
Q Consensus 17 ~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~--~~~~~~~~~~~~~~~p~~vQL~g~-~~~~~~~aa~~~~~~G~d~ 93 (376)
+|+|+..-..+|.++| ++++. ++....--+. ......+....+... .-|=++.+ +++. ..+.++..++|.
T Consensus 6 CGit~~ed~~~~~~~g-ad~iG--fif~~~SpR~vs~~~a~~i~~~~~~~~-~~V~Vf~~~~~~~---i~~~~~~~~~d~ 78 (200)
T d1v5xa_ 6 CGITRLEDALLAEALG-AFALG--FVLAPGSRRRIAPEAARAIGEALGPFV-VRVGVFRDQPPEE---VLRLMEEARLQV 78 (200)
T ss_dssp CCCCCHHHHHHHHHHT-CSEEE--EECCTTCTTBCCHHHHHHHHHHSCSSS-EEEEEESSCCHHH---HHHHHHHTTCSE
T ss_pred cCCCcHHHHHHHHhCC-CCEEE--EEcCCCCCCCcCHHHHHHHHHhhcCce-eeeeeeeechhhh---hhhhhccccccc
Confidence 6889998888888887 66543 4433211111 112223333322222 22334444 4433 445677889999
Q ss_pred EEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEc
Q 017176 94 INLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH 173 (376)
Q Consensus 94 IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh 173 (376)
|.+|.. ..+++ ++.+++. +|+...++..-+...+ ..+..++++.+.
T Consensus 79 vQlHg~-----------------e~~~~----~~~l~~~--~~iik~~~~~~~~~~~-----------~~~~~~~~~L~D 124 (200)
T d1v5xa_ 79 AQLHGE-----------------EPPEW----AEAVGRF--YPVIKAFPLEGPARPE-----------WADYPAQALLLD 124 (200)
T ss_dssp EEECSC-----------------CCHHH----HHHHTTT--SCEEEEEECSSSCCGG-----------GGGSSCSEEEEE
T ss_pred cccccc-----------------CCHHH----HHHHhhc--cccceeeccCchhhHH-----------Hhhcchhheeec
Confidence 999842 12333 2334433 4666555653222111 124568888877
Q ss_pred cCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017176 174 SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 174 ~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
..... .|. +.+ |.+.+..... ..|++..|||. ++.+.++++.++.+|=+.+|+=..|-
T Consensus 125 ~~~~g-~g~-~~~--------~~~~~~~~~~--~~~~~LAGGl~-~~Nv~~~~~~~p~gvDvsSGvE~~~G 182 (200)
T d1v5xa_ 125 GKRPG-SGE-AYP--------RAWAKPLLAT--GRRVILAGGIA-PENLEEVLALRPYALDLASGVEEAPG 182 (200)
T ss_dssp CSSTT-SCC-CCC--------GGGGHHHHHT--TSCEEECSSCC-STTHHHHHHHCCSEEEESGGGEEETT
T ss_pred ccccC-ccc-ccc--------hHHHhhhhhc--cCceEecCCCC-HHHHHHHHhcCCCEEEEcCceECCCC
Confidence 54422 111 111 2222333332 57999999995 67788888878899988888754454
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=92.76 E-value=0.29 Score=40.93 Aligned_cols=67 Identities=10% Similarity=-0.029 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcC
Q 017176 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKG 229 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~G 229 (376)
.++... +++.+.+.|+..+.+.-|+.. .++.+.++++.. +++ +++.|-|.|.++++++++.|
T Consensus 20 ~~~a~~-~~~al~~~Gi~~iEitlr~p~---------------a~~~i~~l~~~~~~~~-~vGaGTV~~~~~~~~a~~aG 82 (202)
T d1wa3a1 20 VEEAKE-KALAVFEGGVHLIEITFTVPD---------------ADTVIKELSFLKEKGA-IIGAGTVTSVEQCRKAVESG 82 (202)
T ss_dssp HHHHHH-HHHHHHHTTCCEEEEETTSTT---------------HHHHHHHTHHHHHTTC-EEEEESCCSHHHHHHHHHHT
T ss_pred HHHHHH-HHHHHHHcCCCEEEEecCCcc---------------HHHHHHHHHHhcCCCc-EEEecccccHHHHHHHHhhc
Confidence 334433 344556899999999877531 256666665433 344 79999999999999999999
Q ss_pred cCeeE
Q 017176 230 AHHVM 234 (376)
Q Consensus 230 ad~Vm 234 (376)
|++++
T Consensus 83 a~fiv 87 (202)
T d1wa3a1 83 AEFIV 87 (202)
T ss_dssp CSEEE
T ss_pred ccEEe
Confidence 99886
|
| >d2p10a1 c.1.12.9 (A:8-204) Uncharacterized protein Mll9387 {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Mll9387-like domain: Uncharacterized protein Mll9387 species: Mesorhizobium loti [TaxId: 381]
Probab=92.73 E-value=0.25 Score=41.23 Aligned_cols=140 Identities=14% Similarity=0.093 Sum_probs=78.0
Q ss_pred HHHHHHHHCCCCEEEecC-------CCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHH
Q 017176 81 KATELANAYNYDEINLNC-------GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~-------gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~ 152 (376)
-.|++++++|||+|=+.. |-|.. .... .|| +-...+.+..+.+...+ ++||++-+- |+....++.
T Consensus 31 lsAklae~aGfdai~~~~~g~~~s~g~~~~-~g~l-~~~----d~~~~~~~~a~~i~~~v~~iPviaD~d-G~g~~~nv~ 103 (197)
T d2p10a1 31 LSAKSEEAGDIDLIVIYNSGRYRMAGRGSL-AGLL-AYG----NANQIVVDMAREVLPVVRHTPVLAGVN-GTDPFMVMS 103 (197)
T ss_dssp HHHHHHHHTTCSEEEECHHHHHHHTTCCGG-GGGB-TEE----EHHHHHHHHHHHHGGGCSSSCEEEEEC-TTCTTCCHH
T ss_pred HHHHHHHHcCCCEEEEecHHHHHHcCCccc-cccc-Chh----HHHHHHHHHHHHHHHhcccCceEEecC-CCCcchhHH
Confidence 477889999999997643 22321 0000 122 11234455566665544 799999997 888766666
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCC--CCCCCCC-cccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcC
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISP--AENRTIP-PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG 229 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~--~~~~~~~-~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~G 229 (376)
++++ .++++|+..|++-.+.....|... .+..... ....+.+--.+.+ .+ +..|=-...+.++.+.+.|
T Consensus 104 rtv~----~~~~aG~agI~~~pk~g~~~g~~~~~~e~a~~~~~~~~d~liiARtd--a~--~~~g~~~Ai~Ra~ay~eAG 175 (197)
T d2p10a1 104 TFLR----ELKEIGFAGVQNFPTVGLIDGLFRQNLEETGMSYAQEVEMIAEAHKL--DL--LTTPYVFSPEDAVAMAKAG 175 (197)
T ss_dssp HHHH----HHHHHTCCEEEECSCGGGCCHHHHHHHHHTTCCHHHHHHHHHHHHHT--TC--EECCEECSHHHHHHHHHHT
T ss_pred HHHH----HHHHcCCeEEeccccccCccchhhhhHHHHHHHhccCccHHHHHHHh--hh--hhccHHHHHHHHHHHHHcC
Confidence 6654 345799999987654332222100 0000000 0001222111222 22 2356667889999999999
Q ss_pred cCeeEE
Q 017176 230 AHHVMV 235 (376)
Q Consensus 230 ad~Vmi 235 (376)
||.|.+
T Consensus 176 AD~i~~ 181 (197)
T d2p10a1 176 ADILVC 181 (197)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 999987
|
| >d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Escherichia coli [TaxId: 562]
Probab=92.18 E-value=2.3 Score=36.74 Aligned_cols=154 Identities=16% Similarity=0.159 Sum_probs=86.8
Q ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhc-ccCccEEE
Q 017176 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-NTNVPVSV 139 (376)
Q Consensus 61 ~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~-~~~~pv~v 139 (376)
.....|+++.+.+.+.++..+.++.++++|+|++-+. .|... . ...+.+.+-..++.+ ..+.|+.+
T Consensus 68 ~~~~~pvi~gv~~~s~~~~i~~a~~a~~~Gad~~~v~--~p~~~-~----------~~~~~~~~~~~~~~~~~~~~~ii~ 134 (295)
T d1hl2a_ 68 AKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAV--TPFYY-P----------FSFEEHCDHYRAIIDSADGLPMVV 134 (295)
T ss_dssp HTTTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEE--CCCSS-C----------CCHHHHHHHHHHHHHHHTTSCEEE
T ss_pred hccccceeeccccchhhHHHHHHHHHHhcCCceeeee--ecccc-C----------CChHHHHHHHHHHhcccCcCcccc
Confidence 3456799999999999999999999999999999885 23321 1 112334444433333 33567776
Q ss_pred Eec---CCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCC
Q 017176 140 KCR---IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 216 (376)
Q Consensus 140 KiR---~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI 216 (376)
--- .|.+- +. ++ +.++.+.-.+..|-..... ...+.+..+..+++.|+..++
T Consensus 135 y~~P~~~g~~l--~~-~~---l~~L~~~pnvvgiK~~~~~------------------~~~~~~~~~~~~~~~v~~g~~- 189 (295)
T d1hl2a_ 135 YNIPARSGVKL--TL-DQ---INTLVTLPGVGALKQTSGD------------------LYQMEQIRREHPDLVLYNGYD- 189 (295)
T ss_dssp EECHHHHCCCC--CH-HH---HHHHHTSTTEEEEEECCCC------------------HHHHHHHHHHCTTCEEEECCG-
T ss_pred ccccccccccc--cc-cc---ccccccCcchhhhcccccc------------------HHHHHHHhhcCCCceEecccH-
Confidence 532 23221 22 22 2333333334444322211 233445555566665554332
Q ss_pred CCHHHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhC
Q 017176 217 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256 (376)
Q Consensus 217 ~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 256 (376)
+.+...+..|++|++.|-+-+. |.++.+.++....|
T Consensus 190 ---~~~~~~~~~G~~G~is~~~n~~-p~~~~~i~~~~~~g 225 (295)
T d1hl2a_ 190 ---EIFASGLLAGADGGIGSTYNIM-GWRYQGIVKALKEG 225 (295)
T ss_dssp ---GGHHHHHHHTCCEEEETTHHHH-HHHHHHHHHHHHTT
T ss_pred ---HHHhhhhccCCCceeccchhcc-chhhHHHHHhhhhh
Confidence 2344556689999999987543 66654444443344
|
| >d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Thermus aquaticus [TaxId: 271]
Probab=92.09 E-value=3.6 Score=36.16 Aligned_cols=114 Identities=11% Similarity=0.126 Sum_probs=73.6
Q ss_pred cCCHHHHHHHHHHHhcccCccEEEEec-C-CCCC----------CccHHHHHHHHHHHhhcCCccEEEEccCccc--cCC
Q 017176 116 MLDPKFVGEAMSVIAANTNVPVSVKCR-I-GVDD----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL--LNG 181 (376)
Q Consensus 116 ~~~~~~~~eiv~~v~~~~~~pv~vKiR-~-g~~~----------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~--~~g 181 (376)
..+.+...++++..+. .+++|-.-+- + |.++ ..+.++..+|+ ++.|+|++.+.-++.. |++
T Consensus 109 eeNi~~Tk~vv~~Ah~-~gv~VEaElG~igg~Ed~~~~~~~~~~~T~peea~~Fv----~~TgvD~LAvaiGn~HG~Yk~ 183 (305)
T d1rvga_ 109 ETNVRETRRVVEAAHA-VGVTVEAELGRLAGIEEHVAVDEKDALLTNPEEARIFM----ERTGADYLAVAIGTSHGAYKG 183 (305)
T ss_dssp HHHHHHHHHHHHHHHH-TTCEEEEEESCCCCSCC------CCTTCCCHHHHHHHH----HHHCCSEEEECSSCCSSSBCS
T ss_pred HHHHHHHHHHHHHhch-hceeEEeeeeeeecccccccccccccccCCHHHHHHHH----HHhCccHhhhhhhhhhcccCC
Confidence 4556677777776654 3555544432 1 2211 12456655554 4689999999877642 222
Q ss_pred CCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCC----------------------CCHHHHHHHHHcCcCeeEEchHH
Q 017176 182 ISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI----------------------NTVDEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 182 ~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI----------------------~s~~da~~~l~~Gad~VmiGRa~ 239 (376)
. ..+.++++.+.++.+.. ++|++.-|+= .+.+++.++++.|+-=|=+++.+
T Consensus 184 ~------~~~~l~~~~l~~I~~~~-~~PLVlHGgS~vp~~~~~~~~~~g~~lhg~sG~~~e~i~~ai~~GV~KiNi~T~l 256 (305)
T d1rvga_ 184 K------GRPFIDHARLERIARLV-PAPLVLHGASAVPPELVERFRASGGEIGEAAGIHPEDIKKAISLGIAKINTDTDL 256 (305)
T ss_dssp S------SSCCCCHHHHHHHHHHC-CSCEEECSCCCCCHHHHHHHHHTTCCCCSCBCCCHHHHHHHHHTTEEEEEECHHH
T ss_pred C------CcccchHHHHHHHHhcc-CCCeeccCCccccHHHHhhhcccCcccCCCCCCCHHHHHHHHHcCeEEEEeChHH
Confidence 1 12346788888888764 8999998864 34678888888888888888866
Q ss_pred hh
Q 017176 240 YQ 241 (376)
Q Consensus 240 l~ 241 (376)
..
T Consensus 257 ~~ 258 (305)
T d1rvga_ 257 RL 258 (305)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1ykwa1 c.1.14.1 (A:146-428) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Chlorobium tepidum [TaxId: 1097]
Probab=92.06 E-value=0.77 Score=40.30 Aligned_cols=196 Identities=15% Similarity=0.128 Sum_probs=111.9
Q ss_pred cCCCCChHHHHHHH--HHhCCCcEEE-ecceeecccccccchhhhhhc-------cCCCCCCEEEEecCCCHHHHHHHHH
Q 017176 15 PMMDWTDNHYRTLA--RLISKHAWLY-TEMLAAETIIYQQGNLDRFLA-------FSPEQHPIVLQIGGSNLDNLAKATE 84 (376)
Q Consensus 15 PM~~~td~~~r~~~--~~~Gg~gl~~-te~v~~~~~~~~~~~~~~~~~-------~~~~~~p~~vQL~g~~~~~~~~aa~ 84 (376)
|..|.|..++..++ ...||++++- -|.+....+..-.+.+....+ -.-+..-..++|.+ +++++.+-++
T Consensus 28 Pk~GLsp~~~a~~~~~~~~GG~D~IKDDE~l~~~~~~p~~eRv~~~~~a~~~a~~~TG~~~lya~NiT~-~~~em~~ra~ 106 (283)
T d1ykwa1 28 PNIGLSPGEFAEIAYQSWLGGLDIAKDDEMLADVTWSSIEERAAHLGKARRKAEAETGEPKIYLANITD-EVDSLMEKHD 106 (283)
T ss_dssp SCSSCCHHHHHHHHHHHHHTTCSEEECCTTCSSBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEEEECCC-CGGGHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhCCCceecCCccCCCCCCccHHHHHHHHHHHHHHHHHHhCCeeEEeeecCC-CHHHHHHHHH
Confidence 77899999998876 4668999875 344443333222222211111 11123457889974 8889999999
Q ss_pred HHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCC-------CccHHHHHHH
Q 017176 85 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD-------HDSYNQLCDF 157 (376)
Q Consensus 85 ~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~-------~~~~~~~~~~ 157 (376)
.+.+.|.+++-+|. .+ +| ...++.+++..++|+..- |.++-. .-+.. .
T Consensus 107 ~~~~~G~~~~mv~~-----~~-----~G----------~~a~~~l~~~~~lpi~~H-~a~~g~~~r~~~~Gis~~----v 161 (283)
T d1ykwa1 107 VAVRNGANALLINA-----LP-----VG----------LSAVRMLSNYTQVPLIGH-FPFIASFSRMEKYGIHSK----V 161 (283)
T ss_dssp HHHHHTCCEEEEEH-----HH-----HC----------HHHHHHHHHHCSSCEEEE-CTTTHHHHCSTTSEECHH----H
T ss_pred HHHHhCCCEEEEec-----cc-----ch----------HHHHHHHHhhcCCCeEee-eccceeeccCcCCCccHH----H
Confidence 99999999998874 11 23 133455555567787663 332210 01121 2
Q ss_pred HHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhh----CCCCeEEEecCCCCHHHHHHHHH-cC-cC
Q 017176 158 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD----FPDLTFTLNGGINTVDEVNAALR-KG-AH 231 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~----~~~ipVi~nGgI~s~~da~~~l~-~G-ad 231 (376)
+.++..-+|+|.|++.+- .|..... ..-..+...++.+. .+-+||+ +||+ ++..+.++++ .| .|
T Consensus 162 l~KL~RLaGaD~ih~~~~----gg~~~~~----~e~~~~~~~~~~~~~~~~k~~~Pv~-sGG~-~~~~vp~~~~~~G~~D 231 (283)
T d1ykwa1 162 MTKLQRLAGLDAVIMPGF----GDRVMTP----EEEVLENVIECTKPMGRIKPCLPVP-GGSD-SALTLQTVYEKVGNVD 231 (283)
T ss_dssp HHHHHHHHTCSEEEEECS----STTSSSC----HHHHHHHHHHHHSCCTTCCCCEEEE-ECSB-CTTTHHHHHHHHCSSC
T ss_pred HHHHHHHcCCCceeecCC----cccccCc----hHHHHHHHHHhcCcccccCCceeec-cCCc-chhhhHHHHHhcCCce
Confidence 345555689999887642 1211100 00001222222221 1236775 5665 6777778887 78 57
Q ss_pred eeE-EchHHhhCCchh
Q 017176 232 HVM-VGRAAYQNPWYT 246 (376)
Q Consensus 232 ~Vm-iGRa~l~~P~lf 246 (376)
.+. +|-|+++.|+=.
T Consensus 232 vil~aGGGi~gHP~G~ 247 (283)
T d1ykwa1 232 FGFVPGRGVFGHPMGP 247 (283)
T ss_dssp SEECBSSSSSSCTTCH
T ss_pred EEEecCcccccCCCch
Confidence 554 899999999853
|
| >d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Leishmania mexicana [TaxId: 5665]
Probab=92.03 E-value=0.4 Score=41.64 Aligned_cols=142 Identities=14% Similarity=0.041 Sum_probs=76.4
Q ss_pred CCEEEEecC--CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017176 65 HPIVLQIGG--SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 65 ~p~~vQL~g--~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
.++++=|+- .+++ ..+.+.++|.|.+-||++.-.. .+.....+.++.+.+..+.|+.+-.-
T Consensus 21 TKIIaTiGPas~~~~----~l~~li~aGvdv~RiN~SHg~~-------------e~~~~~i~~iR~~~~~~g~~v~i~~d 83 (258)
T d1pkla2 21 ARIICTIGPSTQSVE----ALKGLIQSGMSVARMNFSHGSH-------------EYHQTTINNVRQAAAELGVNIAIALD 83 (258)
T ss_dssp SEEEEECCGGGCSHH----HHHHHHHHTEEEEEEETTSSCH-------------HHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CcEEEeeCCCcCCHH----HHHHHHHcCCCEEEEECCCCCH-------------HHHHHHHHHHHHHHHHhCCCcccccc
Confidence 457776642 2343 3344566799999999853221 01223334444444455666665544
Q ss_pred CCCCCCccHHHHHHHHHHHhhcCCccEEEEc-cCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHH
Q 017176 143 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH-SRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVD 220 (376)
Q Consensus 143 ~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh-~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~ 220 (376)
+.-....+-.+..+ +. ...+.|+|++.++ -|+.. +...++++.++. .++.||+ -|.+.+
T Consensus 84 ~~gp~~~t~kd~~d-i~-~a~~~~vD~ialSFVrs~~---------------Dv~~ir~~l~~~~~~~~iia--KIE~~~ 144 (258)
T d1pkla2 84 TKGPPAVSAKDRVD-LQ-FGVEQGVDMIFASFIRSAE---------------QVGDVRKALGPKGRDIMIIC--KIENHQ 144 (258)
T ss_dssp CCCCCSSCHHHHHH-HH-HHHHHTCSEEEETTCCSHH---------------HHHHHHHHHCGGGTTSEEEE--EECSHH
T ss_pred ccccccccccHHHH-HH-HHHhcCCCeEEEeCCCCHH---------------HHHHHHHHHHHcCCCCceEE--EecCch
Confidence 32222112111111 11 2236799999986 33321 134445554332 3566666 777777
Q ss_pred HHHHHHH--cCcCeeEEchHHhhC
Q 017176 221 EVNAALR--KGAHHVMVGRAAYQN 242 (376)
Q Consensus 221 da~~~l~--~Gad~VmiGRa~l~~ 242 (376)
.+...-+ .-+|||||+||=|+-
T Consensus 145 al~nldeI~~~sDgImIaRGDLg~ 168 (258)
T d1pkla2 145 GVQNIDSIIEESDGIMVARGDLGV 168 (258)
T ss_dssp HHHTHHHHHHHSSEEEECHHHHTT
T ss_pred hhhhhhhHHhhCCeeeEechhhhh
Confidence 6654433 358999999998865
|
| >d1oy0a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.99 E-value=1.1 Score=38.71 Aligned_cols=124 Identities=6% Similarity=0.024 Sum_probs=75.4
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCcc-EEEEec
Q 017176 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP-VSVKCR 142 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~p-v~vKiR 142 (376)
+.| +++|...|. ..|+.++++|.|.|-+- -....+. .| |-+.+.-..+.+..-.++|++..... +.+-+.
T Consensus 16 g~k-i~~lTaYD~----~~A~~~~~agiDiiLVG--DSlgmv~-~G-~~~T~~Vt~d~m~~H~~aV~rga~~~~iv~DmP 86 (262)
T d1oy0a_ 16 GHK-WAMLTAYDY----STARIFDEAGIPVLLVG--DSAANVV-YG-YDTTVPISIDELIPLVRGVVRGAPHALVVADLP 86 (262)
T ss_dssp TCC-EEEEECCSH----HHHHHHHTTTCCEEEEC--TTHHHHT-TC-CSSSSSCCGGGTHHHHHHHHHHCTTSEEEEECC
T ss_pred CCc-EEEEeCCCH----HHHHHHHHcCCCEEEEc--Cchhhhh-cC-CCCcceeeHHHHHHHHHHHHhccccceeEecch
Confidence 444 567888884 36788889999998762 2222211 11 12222234555666677777665433 445555
Q ss_pred CCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecC
Q 017176 143 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 215 (376)
Q Consensus 143 ~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGg 215 (376)
.+... .+.++.++...+++.+.|++++.+.|+... .+.+..+.++ +|||++-=|
T Consensus 87 f~s~~-~s~~~a~~nA~r~~~~~ga~avkleg~~~~----------------~~~I~~L~~~--gIPV~gHiG 140 (262)
T d1oy0a_ 87 FGSYE-AGPTAALAAATRFLKDGGAHAVKLEGGERV----------------AEQIACLTAA--GIPVMAHIG 140 (262)
T ss_dssp TTSST-TCHHHHHHHHHHHHHTTCCSEEEEEBSGGG----------------HHHHHHHHHH--TCCEEEEEE
T ss_pred hhhcc-cchHHHHHHHHHHHhccccceeeechhhhh----------------HHHHHHHHhc--CCceEEeee
Confidence 54332 344555555566777899999999876421 4566777765 788887533
|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: CutC-like family: CutC-like domain: Copper homeostasis protein CutC species: Shigella flexneri [TaxId: 623]
Probab=91.96 E-value=1.3 Score=37.84 Aligned_cols=125 Identities=10% Similarity=0.076 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHH
Q 017176 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLC 155 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~ 155 (376)
.+.+.+-++.++++|+|+|-+-+=.+. +. -|.+.+.++++... +.|+|.- | -+|...+..+.+
T Consensus 71 ~~~M~~di~~~k~~G~dGvV~G~L~~d------g~------iD~~~~~~L~~~a~---~l~vTFH-R-AfD~~~d~~~al 133 (247)
T d1twda_ 71 FAAILEDVRTVRELGFPGLVTGVLDVD------GN------VDMPRMEKIMAAAG---PLAVTFH-R-AFDMCANPLYTL 133 (247)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCBCTT------SS------BCHHHHHHHHHHHT---TSEEEEC-G-GGGGCSCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEECCC------CC------ccHHHHHHHHHHhc---ccCeeee-h-hhhhhCCHHHHH
Confidence 355667777889999999988542221 22 46678888887765 4566663 2 245444443333
Q ss_pred HHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeE
Q 017176 156 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM 234 (376)
Q Consensus 156 ~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vm 234 (376)
..+. +.|++.|--||+... .....+.+.++.+...+.-|+.-||| +.+.+..++++|++-+=
T Consensus 134 ---~~Li-~lG~~rILTSGg~~~------------a~~G~~~L~~L~~~a~~~iIm~GgGI-~~~Ni~~l~~~g~~e~H 195 (247)
T d1twda_ 134 ---NNLA-ELGIARVLTSGQKSD------------ALQGLSKIMELIAHRDAPIIMAGAGV-RAENLHHFLDAGVLEVH 195 (247)
T ss_dssp ---HHHH-HHTCCEEEECTTSSS------------TTTTHHHHHHHHTSSSCCEEEEESSC-CTTTHHHHHHHTCSEEE
T ss_pred ---HHHH-hcCCCeEeccCCCCc------------hhHHHHHHHHHHHhcCCcEEEecCCC-CHHHHHHHHHcCCCEEE
Confidence 3333 569999988886531 01126677788766545557778887 55567777777877543
|
| >d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Escherichia coli [TaxId: 562]
Probab=91.68 E-value=0.52 Score=39.91 Aligned_cols=144 Identities=13% Similarity=0.132 Sum_probs=79.4
Q ss_pred CCCCEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccE--E
Q 017176 63 EQHPIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPV--S 138 (376)
Q Consensus 63 ~~~p~~vQL~-g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv--~ 138 (376)
.+.+++.=+= +--|.....+++.+.++|+|.+.+|..++ ++-+..++++..+.- ..++ .
T Consensus 53 ~~~~if~D~K~~DI~nt~~~~~~~~~~~~~~~~tvh~~~g-----------------~~~l~~~~~~~~~~~~~~~~~~~ 115 (231)
T d1eixa_ 53 RGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGG-----------------ARMMTAAREALVPFGKDAPLLIA 115 (231)
T ss_dssp TTCCEEEEEEECSCHHHHHHHHHHHHHHTCSEEEEBGGGC-----------------HHHHHHHHHTTGGGGGGCCEEEE
T ss_pred cCchhhHhhHhhcCcHHHHHHHHhhhcccceEEEEeccCc-----------------HHHHHHHHHhhhhcCccceEEEE
Confidence 3455665543 34467777888888888999998885222 233444555443321 2222 2
Q ss_pred EEecCCCCC--------CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeE
Q 017176 139 VKCRIGVDD--------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF 210 (376)
Q Consensus 139 vKiR~g~~~--------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipV 210 (376)
|-...+++. .....+....++....+.|++.+..++.. ...+ .+....-.+
T Consensus 116 v~~~ts~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------------~~~~---~~~~~~~~~ 174 (231)
T d1eixa_ 116 VTVLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQE------------------AVRF---KQVFGQEFK 174 (231)
T ss_dssp ECSCTTCCHHHHHTTTCCSCHHHHHHHHHHHHHHTTCSEEECCGGG------------------HHHH---HHHHCSSSE
T ss_pred EeeccccccchhcccccccchhHHHHHHHHHHHHhccccccccchh------------------hhhh---hhhcCCccc
Confidence 222222211 11233444444556677888887765432 1112 222223346
Q ss_pred EEecCCCCHH----------HHHHHHHcCcCeeEEchHHhhCCc
Q 017176 211 TLNGGINTVD----------EVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 211 i~nGgI~s~~----------da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
+...||.-.. ...++++.|||.+.|||+....++
T Consensus 175 ~~tPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iIVGR~It~a~d 218 (231)
T d1eixa_ 175 LVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVD 218 (231)
T ss_dssp EEECCBCCTTCCCTTCCSCBCHHHHHHTTCSEEEECHHHHTSSS
T ss_pred eecCCcccCCCCccCccccCCHHHHHHcCCCEEEECCcccCCCC
Confidence 6666664321 134556789999999999998665
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=91.53 E-value=0.64 Score=40.93 Aligned_cols=157 Identities=18% Similarity=0.201 Sum_probs=85.7
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCc-cccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe
Q 017176 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSP-KVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 141 (376)
Q Consensus 63 ~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~-~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 141 (376)
.+.|+.+ ....|+ -.|+.++++||+.+=+...+-.. .....|. | +-..+.+.+.++.|.+.+++||++-.
T Consensus 14 ~~~~~~~-~~~~D~----~sA~~~e~~Gf~a~~~sg~~~sa~~~G~pD~-~---~~~~~e~~~~~~~i~~a~~~Pvi~D~ 84 (289)
T d1muma_ 14 KENPLQI-VGTINA----NHALLAQRAGYQAIYLSGGGVAAGSLGLPDL-G---ISTLDDVLTDIRRITDVCSLPLLVDA 84 (289)
T ss_dssp HCSSEEE-EECSSH----HHHHHHHHTTCSCEEECHHHHHHTTSCCCSS-S---CCCHHHHHHHHHHHHHHCCSCEEEEC
T ss_pred CCCCEEe-ecCCCH----HHHHHHHHcCCCEEEhhHHHHHHHccCCCCC-C---CCChHHHHHHHHHHhcccCCCeeecc
Confidence 3444433 334554 36688999999999774321111 0111221 2 12456778888888888999999998
Q ss_pred cCCCCCC-ccHHHHHHHHHHHhhcCCccEEEEccCcc-ccCCCCCCCCCCCCcccHHHHHHHH---hh--CCCCeEEEec
Q 017176 142 RIGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSRKA-LLNGISPAENRTIPPLKYEYYYALL---RD--FPDLTFTLNG 214 (376)
Q Consensus 142 R~g~~~~-~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~-~~~g~~~~~~~~~~~~~~~~v~~~~---~~--~~~ipVi~nG 214 (376)
-.|+.+. .++.++++ .++++|+..|++--... ...|.. ....+-+. -+.+.+++ .. .+++-||+--
T Consensus 85 d~GyG~~~~~v~~~v~----~~~~aGvagi~iEDq~~pk~~g~~--~~~~~~~~-~e~~~ki~aa~~a~~~~d~~IiART 157 (289)
T d1muma_ 85 DIGFGSSAFNVARTVK----SMIKAGAAGLHIEDQVGAKRCGHR--PNKAIVSK-EEMVDRIRAAVDAKTDPDFVIMART 157 (289)
T ss_dssp TTCSSSSHHHHHHHHH----HHHHHTCSEEEEECBCCCSSTTCC--SCCCBCCH-HHHHHHHHHHHHTCSSTTSEEEEEE
T ss_pred cccccccchHHHHHHH----HHHHCCCCEEEecCcccccccccc--cccceecH-HHHHHHHHHHHHhcCCcchhheecc
Confidence 8887653 24444433 34579999999964321 111111 11111111 23333332 22 2356677766
Q ss_pred CCCCHHHHHHHH-------HcCcCeeEE
Q 017176 215 GINTVDEVNAAL-------RKGAHHVMV 235 (376)
Q Consensus 215 gI~s~~da~~~l-------~~Gad~Vmi 235 (376)
|-.......+++ +.|||+|++
T Consensus 158 Da~~~~g~~eAi~R~~aY~eAGAD~vf~ 185 (289)
T d1muma_ 158 DALAVEGLDAAIERAQAYVEAGAEMLFP 185 (289)
T ss_dssp CCHHHHCHHHHHHHHHHHHHTTCSEEEE
T ss_pred ccccccCHHHHHHHHHHhhhcCCcEEEe
Confidence 655433333332 379999997
|
| >d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.47 E-value=0.26 Score=40.07 Aligned_cols=97 Identities=15% Similarity=0.186 Sum_probs=61.0
Q ss_pred HHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHH
Q 017176 122 VGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA 200 (376)
Q Consensus 122 ~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~ 200 (376)
+.+.++.+++.. ..++.|-. ++.+++.+ + .++|+|.|-+..-+... + -+.+..
T Consensus 66 i~~~i~~~k~~~~~~~I~VEv-------~s~~q~~~----a-~~~~~diImLDN~sp~~-------------~-k~~v~~ 119 (169)
T d1qpoa1 66 VVDALRAVRNAAPDLPCEVEV-------DSLEQLDA----V-LPEKPELILLDNFAVWQ-------------T-QTAVQR 119 (169)
T ss_dssp HHHHHHHHHHHCTTSCEEEEE-------SSHHHHHH----H-GGGCCSEEEEETCCHHH-------------H-HHHHHH
T ss_pred hhhhhhhhhhhcCCCceEEEe-------ccHHHhhh----h-hhcCCcEEEecCcChHh-------------H-HHHHHH
Confidence 345666666543 34565543 34555432 2 25899999877543210 0 123333
Q ss_pred HHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 201 LLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 201 ~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
+....+++.+-++||| +.+.+.+...+|+|.+.+|.-...-|++
T Consensus 120 ~~~~~~~i~lEaSGgI-~~~ni~~ya~~GvD~IS~galt~sa~~l 163 (169)
T d1qpoa1 120 RDSRAPTVMLESSGGL-SLQTAATYAETGVDYLAVGALTHSVRVL 163 (169)
T ss_dssp HHHHCTTCEEEEESSC-CTTTHHHHHHTTCSEEECGGGTSSBCCC
T ss_pred hhccCCeeEEEEeCCC-CHHHHHHHHHcCCCEEECCccccCCCcc
Confidence 4444567889999999 8899999999999999999554444553
|
| >d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Tagatose-1,6-bisphosphate aldolase species: Escherichia coli [TaxId: 562]
Probab=91.47 E-value=3.7 Score=35.69 Aligned_cols=150 Identities=14% Similarity=0.181 Sum_probs=90.2
Q ss_pred CCCEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017176 64 QHPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 64 ~~p~~vQL~g~-~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
..|+.++|=+. +.+ .++++.++||+-|.+..+. -.+..+.+...++++...+ .+++|-.-+-
T Consensus 73 ~vpV~lHlDH~~~~e----~i~~ai~~GftSVMiD~S~------------lp~eeNi~~t~~vv~~ah~-~gv~VE~ElG 135 (284)
T d1gvfa_ 73 NMPLALHLDHHESLD----DIRRKVHAGVRSAMIDGSH------------FPFAENVKLVKSVVDFCHS-QDCSVEAELG 135 (284)
T ss_dssp TSCBEEEEEEECCHH----HHHHHHHTTCCEEEECCTT------------SCHHHHHHHHHHHHHHHHH-TTCEEEEEES
T ss_pred CCeEEeeeccccchH----HHHHHHhcCCCeEEEECCC------------CCHHHHHHHHHHHHHHHHh-hccceeeeee
Confidence 44566655432 222 3344456777777765321 0123455666676666543 3444444332
Q ss_pred C--CCCC----------CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeE
Q 017176 143 I--GVDD----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF 210 (376)
Q Consensus 143 ~--g~~~----------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipV 210 (376)
. |..+ ..+.++..+|+ ++.|+|.+.|.-++..-.+. ..+.++++.+.++.+.. ++|+
T Consensus 136 ~v~g~ed~~~~~~~~~~~T~peea~~Fv----~~TgvD~LAvaiGt~HG~y~------~~p~l~~~~L~~i~~~~-~vPL 204 (284)
T d1gvfa_ 136 RLGGVEDDMSVDAESAFLTDPQEAKRFV----ELTGVDSLAVAIGTAHGLYS------KTPKIDFQRLAEIREVV-DVPL 204 (284)
T ss_dssp CCC-----------CCSSCCHHHHHHHH----HHHCCSEEEECSSCCSSCCS------SCCCCCHHHHHHHHHHC-CSCE
T ss_pred eeccccccccccccccccCCHHHHHHHH----HHhCCCEEeeecCceeeccC------CCCccccchhhhhhccc-cCCe
Confidence 1 1111 13456666665 46899999998777521111 12456788898887765 8999
Q ss_pred EEecCCCCH-HHHHHHHHcCcCeeEEchHHhh
Q 017176 211 TLNGGINTV-DEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 211 i~nGgI~s~-~da~~~l~~Gad~VmiGRa~l~ 241 (376)
+.-|+--.+ +++.++++.|+.=|=|++.+-.
T Consensus 205 VlHGgSG~~~e~i~~ai~~Gi~KiNi~T~l~~ 236 (284)
T d1gvfa_ 205 VLHGASDVPDEFVRRTIELGVTKVNVATELKI 236 (284)
T ss_dssp EECCCTTCCHHHHHHHHHTTEEEEEECHHHHH
T ss_pred EeeCCCCCCHHHHHHHHHcCeEEEEechHHHH
Confidence 988876555 5677888899999999998754
|
| >d1wdda1 c.1.14.1 (A:151-475) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=91.08 E-value=3.3 Score=36.78 Aligned_cols=203 Identities=14% Similarity=0.158 Sum_probs=111.2
Q ss_pred cEEEc---cCCCCChHHHHHHH--HHhCCCcEEE-ecceeecccccccchhhhhhc-----cCC--CCCCEEEEecCCCH
Q 017176 10 WFSVA---PMMDWTDNHYRTLA--RLISKHAWLY-TEMLAAETIIYQQGNLDRFLA-----FSP--EQHPIVLQIGGSNL 76 (376)
Q Consensus 10 ri~lA---PM~~~td~~~r~~~--~~~Gg~gl~~-te~v~~~~~~~~~~~~~~~~~-----~~~--~~~p~~vQL~g~~~ 76 (376)
|++.+ |..|.+..++..++ ...||+++|= -|.+....+..-.+......+ ..+ ...-..+++.+.++
T Consensus 18 PLlgtiiKP~~Glsp~~~a~~~~~~~~GGvD~IKDDE~l~~~~~~p~~eRv~~~~~av~~a~~eTG~~k~y~~nit~~~~ 97 (325)
T d1wdda1 18 PLLGCTIKPKLGLSAKNYGRACYECLRGGLDFTKDDENVNSQPFMRWRDRFVFCAEAIYKSQAETGEIKGHYLNATAGTC 97 (325)
T ss_dssp CEEECBCSSSSCCCHHHHHHHHHHHHHTTCSEEECCTTCSSBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEEEECCCSSH
T ss_pred CeEEeecCCCCCCCHHHHHHHHHHHHccCCceeeCCcccCCCCCcchHHHHHHHHHHHHHHHHhhCCceeEEeccCCCCH
Confidence 45544 77789999998876 4668999875 344443333222222211111 011 22457889988899
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhc---ccCccEEEEecCCCC-------
Q 017176 77 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA---NTNVPVSVKCRIGVD------- 146 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~---~~~~pv~vKiR~g~~------- 146 (376)
+++.+-++.+.++|.+++-+|.. . +|- ..++.+++ ..++|+-. .|.++.
T Consensus 98 ~em~~ra~~a~e~G~~~~mi~~~-----~-----~G~----------~a~~~l~~~~~~~~l~ih~-Hra~~ga~tr~~~ 156 (325)
T d1wdda1 98 EEMIKRAVFARELGVPIVMHDYL-----T-----GGF----------TANTSLAHYCRDNGLLLHI-HRAMHAVIDRQKN 156 (325)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEHH-----H-----HCH----------HHHHHHHHHHHHHTCEEEE-ECTTHHHHHSCSS
T ss_pred HHHHHHHHHHHHcCCCEEEEecc-----c-----ccH----------HHHHHHHHhhhhcCceeec-ccccccccccCCC
Confidence 99999999999999999988741 1 131 11222222 23566665 454431
Q ss_pred CCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhh------------------CCCC
Q 017176 147 DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD------------------FPDL 208 (376)
Q Consensus 147 ~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~------------------~~~i 208 (376)
..-+.. .+.+++.-+|+|.+++.+-.....+ .. ....+....+... .+.+
T Consensus 157 ~Gis~~----vl~kl~RLaGaD~ih~~~~~Gk~~~---~~-----~~~~~~~~~l~~~~~~~d~~~~~~~~q~~~~~k~~ 224 (325)
T d1wdda1 157 HGMHFR----VLAKALRMSGGDHIHAGTVVGKLEG---ER-----EMTLGFVDLLRDDFIEKDRARGIFFTQDWVSMPGV 224 (325)
T ss_dssp SEECHH----HHHHHHHHHCCSEEECCCSSSSBCC---CH-----HHHHHHHHHHHCSEECCBGGGTBCSCEECTTCCCC
T ss_pred CCccHH----HHHHHHHHcCCCccccCccccCcCC---CH-----HHHHHHHHHHHhhhcccccccCccccCcccCCCCe
Confidence 111222 1344455589999887542211111 00 0001111222110 0112
Q ss_pred eEEEecCCCCHHHHHHHHH-cCcCe-eEEchHHhhCCchh
Q 017176 209 TFTLNGGINTVDEVNAALR-KGAHH-VMVGRAAYQNPWYT 246 (376)
Q Consensus 209 pVi~nGgI~s~~da~~~l~-~Gad~-VmiGRa~l~~P~lf 246 (376)
-=+.+||+ ++..+.++++ .|-|. +++|-|+++.|+=.
T Consensus 225 ~Pv~sGG~-~~g~vp~~~~~~G~D~il~~GGGi~gHP~G~ 263 (325)
T d1wdda1 225 IPVASGGI-HVWHMPALTEIFGDDSVLQFGGGTLGHPWGN 263 (325)
T ss_dssp EEEEESSC-CGGGHHHHHHHHCSSSEEECSHHHHTSTTCH
T ss_pred eeecCCCC-CHhHHHHHHHhcCCcEEEEcCcceecCCCcc
Confidence 22455666 6666677777 78774 56799999999964
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.91 E-value=2.1 Score=37.46 Aligned_cols=113 Identities=10% Similarity=0.064 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCC--CCCCCCCCcccH
Q 017176 119 PKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS--PAENRTIPPLKY 195 (376)
Q Consensus 119 ~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~--~~~~~~~~~~~~ 195 (376)
++...+-++.+++.. ..++.+.+..|.+. + +..+. ++.+++.|+|+|.++-......+.. +......+....
T Consensus 86 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~---d~~~~-a~~~~~~gad~lelN~scPn~~~~~~~~~~~~~~~~~~~ 160 (312)
T d1gtea2 86 AAYWCQSVTELKADFPDNIVIASIMCSYNK-N---DWMEL-SRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVR 160 (312)
T ss_dssp HHHHHHHHHHHHHHCTTSEEEEEECCCSCH-H---HHHHH-HHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHH
T ss_pred hhhhhhhhccccccccccccccccccccch-h---HHHHH-HHHhccCCCCeEeeccCCCCcccccccchhhhhhHHHHH
Confidence 455566666666544 44566666555332 2 33332 3345679999999974432111100 000000011112
Q ss_pred HHHHHHHhhCCCCeEEE--ecCCCCHHHHHHHHH-cCcCeeEEch
Q 017176 196 EYYYALLRDFPDLTFTL--NGGINTVDEVNAALR-KGAHHVMVGR 237 (376)
Q Consensus 196 ~~v~~~~~~~~~ipVi~--nGgI~s~~da~~~l~-~Gad~VmiGR 237 (376)
+.+..+++ .+++||+. ..++.+..++.+++. .|+|+|.+.-
T Consensus 161 ~i~~~v~~-~~~~pv~vKl~~~~~~~~~i~~~~~~~g~~gi~~~n 204 (312)
T d1gtea2 161 NICRWVRQ-AVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATN 204 (312)
T ss_dssp HHHHHHHH-HCSSCEEEEECSCSSCHHHHHHHHHHHTCSEEEECC
T ss_pred HHHHHHhh-ccCCceeecccccchhHHHHHHHHHHhcccceEEEe
Confidence 23344443 35899884 567788888777775 9999997753
|
| >d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=90.89 E-value=1.4 Score=35.43 Aligned_cols=63 Identities=8% Similarity=0.149 Sum_probs=46.6
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
++|+|.|-+..-+ .+.+.+.++.. +++.+-++||| +.+.+.+..++|+|.+.+|.-...-
T Consensus 97 ~~g~diImLDN~~------------------pe~~~~av~~i~~~~~lEaSGgI-~~~ni~~ya~~GVD~IS~galt~~a 157 (167)
T d1qapa1 97 KAGADIIMLDNFN------------------TDQMREAVKRVNGQARLEVSGNV-TAETLREFAETGVDFISVGALTKHV 157 (167)
T ss_dssp HTTCSEEEESSCC------------------HHHHHHHHHTTCTTCCEEECCCS-CHHHHHHHHHTTCSEEECSHHHHEE
T ss_pred hcCCcEEEecCCC------------------HHHHHHHHHhcCCceEEEEeCCC-CHHHHHHHHHcCCCEEECCcccCCC
Confidence 5899998876543 23334444433 46888899999 8999999999999999999876655
Q ss_pred Cch
Q 017176 243 PWY 245 (376)
Q Consensus 243 P~l 245 (376)
|++
T Consensus 158 ~~~ 160 (167)
T d1qapa1 158 RAL 160 (167)
T ss_dssp ECC
T ss_pred Ccc
Confidence 654
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=90.89 E-value=2.2 Score=36.80 Aligned_cols=126 Identities=15% Similarity=0.074 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 152 (376)
|.+.+.+-++.+.+.|+++|=++.+ +|+ +.+| ..+.-.++++.+.+.+ ++|+.+-+. . .+..
T Consensus 22 D~~~~~~~i~~l~~~Gv~gl~~~G~--------tGE-~~~L--s~~Er~~l~~~~~~~~~~~~~vi~gv~----~-~s~~ 85 (292)
T d1xkya1 22 DFAKTTKLVNYLIDNGTTAIVVGGT--------TGE-SPTL--TSEEKVALYRHVVSVVDKRVPVIAGTG----S-NNTH 85 (292)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESST--------TTT-GGGS--CHHHHHHHHHHHHHHHTTSSCEEEECC----C-SCHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECeE--------ccc-hhhC--CHHHHHHHHHHHHHHhCCCceEEEecC----c-ccHH
Confidence 6788899999999999999988642 344 3333 3344444555554443 467777433 2 3455
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE-e-----cCCCCHHHHHHHH
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-N-----GGINTVDEVNAAL 226 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~-n-----GgI~s~~da~~~l 226 (376)
+.++. ++.+++.|+|++.+..-. +...+ ...-++++.++.++. ++||+. | |.-.+.+.+.++.
T Consensus 86 ~~i~~-a~~a~~~Gad~ilv~pP~--~~~~s-------~~~i~~~~~~v~~~~-~~pi~iYn~P~~~~~~~~~~~~~~l~ 154 (292)
T d1xkya1 86 ASIDL-TKKATEVGVDAVMLVAPY--YNKPS-------QEGMYQHFKAIAEST-PLPVMLYNVPGRSIVQISVDTVVRLS 154 (292)
T ss_dssp HHHHH-HHHHHHTTCSEEEEECCC--SSCCC-------HHHHHHHHHHHHHTC-SSCEEEEECHHHHSSCCCHHHHHHHH
T ss_pred HHHHH-HHHHHHcCCCEEEECCCC--CCCCC-------HHHHHHHHHHHhccC-CCcEEEEeCCcccCCccCHHHHhhhc
Confidence 66654 456678999999987431 11111 011155666776664 688875 3 4456777776654
Q ss_pred H
Q 017176 227 R 227 (376)
Q Consensus 227 ~ 227 (376)
+
T Consensus 155 ~ 155 (292)
T d1xkya1 155 E 155 (292)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >d1ykwa1 c.1.14.1 (A:146-428) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Chlorobium tepidum [TaxId: 1097]
Probab=90.81 E-value=2 Score=37.40 Aligned_cols=142 Identities=18% Similarity=0.127 Sum_probs=87.5
Q ss_pred CCCCEEEEec----CCCHHHHHHHHHHHHHCCCCEEEe--cCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCcc
Q 017176 63 EQHPIVLQIG----GSNLDNLAKATELANAYNYDEINL--NCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 136 (376)
Q Consensus 63 ~~~p~~vQL~----g~~~~~~~~aa~~~~~~G~d~Iei--N~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~p 136 (376)
.++|++.-+. |-+|+.+++.+..+...|.|.|-= |++.|. -+-+..|.+.+.+.++...+.++..
T Consensus 17 ~~RPL~~tiiKPk~GLsp~~~a~~~~~~~~GG~D~IKDDE~l~~~~---------~~p~~eRv~~~~~a~~~a~~~TG~~ 87 (283)
T d1ykwa1 17 HGRPIFFGVVKPNIGLSPGEFAEIAYQSWLGGLDIAKDDEMLADVT---------WSSIEERAAHLGKARRKAEAETGEP 87 (283)
T ss_dssp CSSCEEEEECSSCSSCCHHHHHHHHHHHHHTTCSEEECCTTCSSBT---------TBCHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCceEEeecCCCCCCCHHHHHHHHHHHHhCCCceecCCccCCCCC---------CccHHHHHHHHHHHHHHHHHHhCCe
Confidence 5889998886 668999999999999999999943 332221 1223345566666666666666544
Q ss_pred EEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEec--
Q 017176 137 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG-- 214 (376)
Q Consensus 137 v~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nG-- 214 (376)
...-..+. .+.+++.+-++ .+.+.|++++.|..-+. | |..+..+++. +++||.+--
T Consensus 88 ~lya~NiT-~~~~em~~ra~----~~~~~G~~~~mv~~~~~---G-------------~~a~~~l~~~-~~lpi~~H~a~ 145 (283)
T d1ykwa1 88 KIYLANIT-DEVDSLMEKHD----VAVRNGANALLINALPV---G-------------LSAVRMLSNY-TQVPLIGHFPF 145 (283)
T ss_dssp CEEEEECC-CCGGGHHHHHH----HHHHHTCCEEEEEHHHH---C-------------HHHHHHHHHH-CSSCEEEECTT
T ss_pred eEEeeecC-CCHHHHHHHHH----HHHHhCCCEEEEecccc---h-------------HHHHHHHHhh-cCCCeEeeecc
Confidence 33333332 22233333222 33467888888765321 2 5666666664 589998742
Q ss_pred ----------CCCCHHHHHHHHH-cCcCeeEEc
Q 017176 215 ----------GINTVDEVNAALR-KGAHHVMVG 236 (376)
Q Consensus 215 ----------gI~s~~da~~~l~-~Gad~VmiG 236 (376)
|| +..-..++.. .|||.+.++
T Consensus 146 ~g~~~r~~~~Gi-s~~vl~KL~RLaGaD~ih~~ 177 (283)
T d1ykwa1 146 IASFSRMEKYGI-HSKVMTKLQRLAGLDAVIMP 177 (283)
T ss_dssp THHHHCSTTSEE-CHHHHHHHHHHHTCSEEEEE
T ss_pred ceeeccCcCCCc-cHHHHHHHHHHcCCCceeec
Confidence 23 3334555555 899999987
|
| >d1geha1 c.1.14.1 (A:137-443) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Thermococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Archaeon Thermococcus kodakaraensis [TaxId: 311400]
Probab=90.67 E-value=1 Score=39.94 Aligned_cols=147 Identities=13% Similarity=0.134 Sum_probs=88.4
Q ss_pred CCCCEEEEec----CCCHHHHHHHHHHHHHCCCCEEEe--cCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCcc
Q 017176 63 EQHPIVLQIG----GSNLDNLAKATELANAYNYDEINL--NCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 136 (376)
Q Consensus 63 ~~~p~~vQL~----g~~~~~~~~aa~~~~~~G~d~Iei--N~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~p 136 (376)
.++|++.-+. |-+|+++++.+..+...|+|.|-= ++..|. -+-+..|.+.+.+.+++..+.++..
T Consensus 17 ~~RPL~~tiiKP~~Gls~~~~a~~~~~~~~GGvD~IKDDe~la~~~---------~~p~~eRv~~~~~a~~~a~~~TG~~ 87 (307)
T d1geha1 17 KDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPW---------YNRFEERAEIMAKIIDKVENETGEK 87 (307)
T ss_dssp CSSCEEEECCSSCSSCCHHHHHHHHHHHHHTTCCEEECCTTCCCCT---------TSCHHHHHHHHHHHHHHHHHHTCSC
T ss_pred CCCceEEeeeCCcCCCCHHHHHHHHHHHHhcCCCeeeCCccccCCC---------CCcHHHHHHHHHHHHHHHHHHhCCe
Confidence 6789998886 678999999999999999999833 332221 1223455666667777766667655
Q ss_pred EEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEe---
Q 017176 137 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN--- 213 (376)
Q Consensus 137 v~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~n--- 213 (376)
...=.. ++. +..++.+.. +.+.+.|+.++-|..-.. |.+ .+..+++..++. ++||.+-
T Consensus 88 ~lYa~N--iT~--~~~em~~ra-~~a~~~G~~~vmi~~~~~---G~~----------al~~lr~~~~~~-~lpIh~H~A~ 148 (307)
T d1geha1 88 KTWFAN--ITA--DLLEMEQRL-EVLADLGLKHAMVDVVIT---GWG----------ALRYIRDLAADY-GLAIHGHRAM 148 (307)
T ss_dssp CEEECB--CCS--SHHHHHHHH-HHHHHHTCCEEEEEHHHH---CHH----------HHHHHHHHHHHT-TCEEEEECTT
T ss_pred eEEEEE--ccC--ChHHHHHHH-HHHHHcCCCEEEEecccc---chH----------HHHHHHHhhccC-CeEEEecccc
Confidence 443333 232 345665553 344678999888764331 210 023334433444 6888753
Q ss_pred -cCCC-------CHHHHHHHHH-cCcCeeEEch
Q 017176 214 -GGIN-------TVDEVNAALR-KGAHHVMVGR 237 (376)
Q Consensus 214 -GgI~-------s~~da~~~l~-~Gad~VmiGR 237 (376)
|-+. +..-..+++. .|+|.+.++.
T Consensus 149 ~ga~~~~~~~Gis~~vl~kl~Rl~GaD~ih~~~ 181 (307)
T d1geha1 149 HAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGT 181 (307)
T ss_dssp GGGTSSCTTSEECHHHHHHHHHHHTCSEEECCC
T ss_pred ceeeecCccCCccHHHHHHHHHHhCcCceeccc
Confidence 2222 2333445555 8999998865
|
| >d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.63 E-value=0.3 Score=39.69 Aligned_cols=97 Identities=10% Similarity=0.112 Sum_probs=60.5
Q ss_pred HHHHHHHHhccc--CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHH
Q 017176 122 VGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 199 (376)
Q Consensus 122 ~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~ 199 (376)
+.+.++.+++.. ..++.|-+ ++++++.+ ++ ++|+|.|-+..-+... + -+.+.
T Consensus 64 ~~~~~~~~~~~~~~~~~I~VEv-------~~~~e~~~----a~-~~g~d~i~LDn~~pe~-------------~-k~~~~ 117 (170)
T d1o4ua1 64 AERAVQEVRKIIPFTTKIEVEV-------ENLEDALR----AV-EAGADIVMLDNLSPEE-------------V-KDISR 117 (170)
T ss_dssp HHHHHHHHHTTSCTTSCEEEEE-------SSHHHHHH----HH-HTTCSEEEEESCCHHH-------------H-HHHHH
T ss_pred HHHHHHHHHhhCCCCceEEEEe-------CcHHHHHH----HH-hcCccEEEEcCcChhh-------------H-hHHHH
Confidence 345666766544 34566543 23555433 22 5899998877543210 0 12223
Q ss_pred HHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 200 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 200 ~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
.+....+++.+-++||| +.+.+.+..++|+|.+.+|.-...-|++
T Consensus 118 ~lk~~~~~i~lEaSGGI-~~~ni~~~a~~GVD~Is~g~lt~~a~~~ 162 (170)
T d1o4ua1 118 RIKDINPNVIVEVSGGI-TEENVSLYDFETVDVISSSRLTLQEVFV 162 (170)
T ss_dssp HHHHHCTTSEEEEEECC-CTTTGGGGCCTTCCEEEEGGGTSSCCCC
T ss_pred HHHhhCCcEEEEEECCC-CHHHHHHHHHcCCCEEEcCccccCCCCc
Confidence 33444568899999999 7788887777999999999665555553
|
| >d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Neisseria meningitidis [TaxId: 487]
Probab=90.62 E-value=3.4 Score=35.42 Aligned_cols=118 Identities=8% Similarity=-0.010 Sum_probs=73.8
Q ss_pred EEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCcc-EEEEecCCCC
Q 017176 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP-VSVKCRIGVD 146 (376)
Q Consensus 68 ~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~p-v~vKiR~g~~ 146 (376)
+++|...|. ..|+.++++|.|.|-+- -....+. .| |-+-+.-..+.+..-.++|++....+ +.+-+..+..
T Consensus 17 i~~lTayd~----~~A~~ae~agiDiilVG--DSlgm~~-~G-~~~T~~vt~d~mi~h~~aV~rga~~~~~i~dmPf~sy 88 (260)
T d1o66a_ 17 IAMLTAYES----SFAALMDDAGVEMLLVG--DSLGMAV-QG-RKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAY 88 (260)
T ss_dssp EEEEECCSH----HHHHHHHHTTCCEEEEC--TTHHHHT-TC-CSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCTTSS
T ss_pred EEEEeCCCH----HHHHHHHHcCCCEEEEc--CCchhee-cC-CCCccccchhhhhhhhHHHHccCcceeeecchhhhhh
Confidence 568888884 46778889999999773 2221111 11 23334456778888888888866444 4555555433
Q ss_pred CCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEe
Q 017176 147 DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN 213 (376)
Q Consensus 147 ~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~n 213 (376)
. .+.++..+....+. ++|+|++-+.++... .+.++.+.++ +|||++-
T Consensus 89 ~-~~~~~~~~a~~~~~-~~gadavk~eg~~~~----------------~~~i~~l~~~--gIPV~gH 135 (260)
T d1o66a_ 89 Q-QSKEQAFAAAAELM-AAGAHMVKLEGGVWM----------------AETTEFLQMR--GIPVCAH 135 (260)
T ss_dssp S-SCHHHHHHHHHHHH-HTTCSEEEEECSGGG----------------HHHHHHHHHT--TCCEEEE
T ss_pred c-chhHHHHHHHHHHH-Hhhhhhccccchhhh----------------hHHHHHHHHc--CCeeEee
Confidence 3 33445555433344 589999999876421 4566677764 8999874
|
| >d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.51 E-value=0.58 Score=40.25 Aligned_cols=125 Identities=10% Similarity=0.009 Sum_probs=69.6
Q ss_pred HHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCcc--HHHHHHHHHH
Q 017176 83 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDS--YNQLCDFIYK 160 (376)
Q Consensus 83 a~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~--~~~~~~~i~~ 160 (376)
.+.+.++|.|.+-|||+.-... ......+.++.+.+..+.|+.+-.-+......+ .++ +++
T Consensus 20 l~~li~aGvdv~RlN~SHg~~~-------------~~~~~i~~ir~~~~~~~~~~~I~~Dl~gp~ltekD~~~-i~~--- 82 (246)
T d1e0ta2 20 LAKMLDAGMNVMRLNFSHGDYA-------------EHGQRIQNLRNVMSKTGKTAAILLDTKGPALAEKDKQD-LIF--- 82 (246)
T ss_dssp HHHHHHHTEEEEEEETTSSCHH-------------HHHHHHHHHHHHHHHHTCCCEEEEECCCCSSCHHHHHH-HHH---
T ss_pred HHHHHHCCCCEEEEECCCCCHH-------------HHHHHHHHHHHHHHHcCCCCcccccccccccccCcchh-hhH---
Confidence 3445667999999998542210 112333444444444567777665553333221 222 122
Q ss_pred HhhcCCccEEEEc-cCccccCCCCCCCCCCCCcccHHHHHHHHhhC--CCCeEEEecCCCCHHHHHHHHH--cCcCeeEE
Q 017176 161 VSSLSPTRHFIIH-SRKALLNGISPAENRTIPPLKYEYYYALLRDF--PDLTFTLNGGINTVDEVNAALR--KGAHHVMV 235 (376)
Q Consensus 161 ~~e~~Gvd~I~vh-~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~--~~ipVi~nGgI~s~~da~~~l~--~Gad~Vmi 235 (376)
..+.|+|+|.++ -|+.. +...++++.+.. .+++||+ -|.+.+.+..+-+ .-+|+|||
T Consensus 83 -a~~~~vD~ialSFVr~~~---------------Dv~~~r~~l~~~~~~~~~iia--KIE~~~al~nldeIi~~sDgImI 144 (246)
T d1e0ta2 83 -GCEQGVDFVAASFIRKRS---------------DVIEIREHLKAHGGENIHIIS--KIENQEGLNNFDEILEASDGIMV 144 (246)
T ss_dssp -HHHHTCSEEEESSCCSHH---------------HHHHHHHHHHTTTCTTCEEEE--EECSHHHHHTHHHHHHHSSEEEE
T ss_pred -HHHcCCCEEEEcCCCCHH---------------HHHHHHHHHHHhCCCCceEEE--EecchhhhhchHHHHhhcceEEE
Confidence 236899999986 44321 133445555443 2455654 5677765554433 35899999
Q ss_pred chHHhhC
Q 017176 236 GRAAYQN 242 (376)
Q Consensus 236 GRa~l~~ 242 (376)
+||=|+-
T Consensus 145 aRGDLg~ 151 (246)
T d1e0ta2 145 ARGDLGV 151 (246)
T ss_dssp EHHHHHH
T ss_pred Eccchhh
Confidence 9998865
|
| >d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Bacillus subtilis [TaxId: 1423]
Probab=90.19 E-value=2.8 Score=35.27 Aligned_cols=143 Identities=15% Similarity=0.151 Sum_probs=76.9
Q ss_pred CCCEEEEe-cCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-----CccE
Q 017176 64 QHPIVLQI-GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-----NVPV 137 (376)
Q Consensus 64 ~~p~~vQL-~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-----~~pv 137 (376)
+.+++.=+ ++--|.....++..+.+.|+|.+.+|..+. ++.+..+++.+++.. ...+
T Consensus 54 ~~~IflD~K~~DIgnTv~~~~~~~~~~~~d~vtvh~~~G-----------------~~~i~aa~~~~~~~~~~~~~~~~l 116 (237)
T d1dbta_ 54 NCELFLDLKLHDIPTTVNKAMKRLASLGVDLVNVHAAGG-----------------KKMMQAALEGLEEGTPAGKKRPSL 116 (237)
T ss_dssp TCEEEEEEEECSCHHHHHHHHHHHHTTTCSEEEEEGGGC-----------------HHHHHHHHHHHHHHSCTTSCCCEE
T ss_pred chheehhhhhccCchHHHHHHHhhhccccceEEeecccc-----------------hHHHHHHHHhhhhcchhcccccee
Confidence 44555544 234467777777778888999999985322 233444444444321 1122
Q ss_pred EEEecCC-CCC---------CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCC
Q 017176 138 SVKCRIG-VDD---------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD 207 (376)
Q Consensus 138 ~vKiR~g-~~~---------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ 207 (376)
..-+-+. +++ .....+.+....+...+.|++.+..++... ..+++...+
T Consensus 117 ~~v~~lts~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~g~v~s~~~~---------------------~~~r~~~~~ 175 (237)
T d1dbta_ 117 IAVTQLTSTSEQIMKDELLIEKSLIDTVVHYSKQAEESGLDGVVCSVHEA---------------------KAIYQAVSP 175 (237)
T ss_dssp EEECSCTTCCHHHHHHTSCBCSCHHHHHHHHHHHHHHTTCSEEECCGGGH---------------------HHHTTTSCT
T ss_pred EEEecccccchHHHHhhhhhhcccchhhHHHHHhhhhcCcceeecchhhh---------------------hhhcccccc
Confidence 2222211 111 112333333345556678998887665321 112222223
Q ss_pred CeEEEecCCCCHH----------HHHHHHHcCcCeeEEchHHhhCCc
Q 017176 208 LTFTLNGGINTVD----------EVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 208 ipVi~nGgI~s~~----------da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
-.++...||.-.. ...++++.|||.+.|||+.+..+.
T Consensus 176 ~~~ivtPGI~~~~~~~~dq~r~~tp~~a~~~GaD~iIVGR~I~~s~d 222 (237)
T d1dbta_ 176 SFLTVTPGIRMSEDAANDQVRVATPAIAREKGSSAIVVGRSITKAED 222 (237)
T ss_dssp TCEEEECCBCCTTSCCTTCSSCBCHHHHHHTTCSEEEECHHHHTSSC
T ss_pred ceeEeccccccCCCCCCCceeeCCHHHHHHcCCCEEEECCcccCCCC
Confidence 3355555553321 134566789999999999997666
|
| >d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Escherichia coli [TaxId: 562]
Probab=89.99 E-value=2.8 Score=36.07 Aligned_cols=156 Identities=8% Similarity=0.036 Sum_probs=84.5
Q ss_pred CCCChHHHHHHHHHhCCCcEEEecceeecccccccchh-----hhhh------ccCCCCCCEEEEe-cC--CCHHHHHHH
Q 017176 17 MDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNL-----DRFL------AFSPEQHPIVLQI-GG--SNLDNLAKA 82 (376)
Q Consensus 17 ~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~-----~~~~------~~~~~~~p~~vQL-~g--~~~~~~~~a 82 (376)
.+..|.++..++.+.| ++++.++-....- ..+.+++ +.++ .......-+++-+ ++ .+.++..+.
T Consensus 20 lTayD~~~A~~~~~ag-vDiiLVGDSlgmv-~~G~~~T~~vt~d~mi~H~~aV~rga~~~~vv~DmPf~sy~~~~~a~~~ 97 (262)
T d1m3ua_ 20 ITAYDYSFAKLFADEG-LNVMLVGDSLGMT-VQGHDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFMAYATPEQAFEN 97 (262)
T ss_dssp EECCSHHHHHHHHHHT-CCEEEECTTHHHH-TTCCSSSTTCCHHHHHHHHHHHHHHCTTSEEEEECCTTSSSSHHHHHHH
T ss_pred EEcCCHHHHHHHHHCC-CCEEEEcCcHHhc-ccCCCCcceechHhHHHHHHHHHhccccceeEeccccccchhhHHHHHH
Confidence 4567899999888876 8988765221110 0111111 1111 0011122222222 12 245666677
Q ss_pred HHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC---------CCCC----Cc
Q 017176 83 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI---------GVDD----HD 149 (376)
Q Consensus 83 a~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~---------g~~~----~~ 149 (376)
|.++.+.|+|.|-|-. |. ...++++.+.+ .++||.--+-+ |+.- .+
T Consensus 98 a~~l~~~GAdaVKlEg-------------g~-------~~~~~I~~L~~-~gIPV~gHiGL~PQ~~~~~GG~r~qGkt~~ 156 (262)
T d1m3ua_ 98 AATVMRAGANMVKIEG-------------GE-------WLVETVQMLTE-RAVPVCGHLGLTPQSVNIFGGYKVQGRGDE 156 (262)
T ss_dssp HHHHHHTTCSEEECCC-------------SG-------GGHHHHHHHHH-TTCCEEEEEESCGGGHHHHTSSCCCCCSHH
T ss_pred HHHHHhcCCcEEEecc-------------ch-------hHHHHHHHHHH-cCCeEEeehhhchhhhhhcCCccccCccHH
Confidence 7777789999996632 11 12355666554 37888765543 1111 12
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecC
Q 017176 150 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 215 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGg 215 (376)
+..++++. ++.+|++|+..|.+.+-. -+...++.+. .+||+|+-|.
T Consensus 157 ea~~l~~~-a~~le~AGaf~ivlE~vp------------------~~va~~It~~-~~IPtIGIGA 202 (262)
T d1m3ua_ 157 AGDQLLSD-ALALEAAGAQLLVLECVP------------------VELAKRITEA-LAIPVIGIGA 202 (262)
T ss_dssp HHHHHHHH-HHHHHHHTCCEEEEESCC------------------HHHHHHHHHH-CSSCEEEESS
T ss_pred HHHHHHHH-HHHHHhhcceEEEEeccc------------------HHHHHHHHhh-hcceeEeecc
Confidence 23344443 456789999999987632 2334455555 4999998774
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=89.77 E-value=5.4 Score=34.19 Aligned_cols=199 Identities=11% Similarity=0.007 Sum_probs=108.4
Q ss_pred CChHHHHHHH---HHhCCCcEEEecceeecccccccchh---hhhhccCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCC
Q 017176 19 WTDNHYRTLA---RLISKHAWLYTEMLAAETIIYQQGNL---DRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYD 92 (376)
Q Consensus 19 ~td~~~r~~~---~~~Gg~gl~~te~v~~~~~~~~~~~~---~~~~~~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d 92 (376)
+....++.++ .+.|-.|+++.+...--..+...++. +...+......|+++...+.+.++..+.++.++++|+|
T Consensus 19 iD~~~~~~~i~~l~~~Gv~Gl~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~g~~~~s~~~~i~~~~~a~~~Gad 98 (292)
T d2a6na1 19 VCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIV 98 (292)
T ss_dssp BCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHTTTTSSCC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhhhhccccceeEeecccchHHHHHHHhccHHhcCCc
Confidence 3445666543 35564556654443221111111111 11223445667999999999999999999999999999
Q ss_pred EEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCC-ccHHHHHHHHHHHhhcCCccEEE
Q 017176 93 EINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH-DSYNQLCDFIYKVSSLSPTRHFI 171 (376)
Q Consensus 93 ~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~-~~~~~~~~~i~~~~e~~Gvd~I~ 171 (376)
++-+-. |.-. + ...+.+.+-.+.+.+++++|+.+--.+.+... -+. ++ +.++.+.-.+-.+-
T Consensus 99 ~~~~~p--P~~~--~---------~~~~~i~~~f~~v~~~~~~pi~iYn~P~~~g~~~~~-e~---~~~L~~~pnv~giK 161 (292)
T d2a6na1 99 GCLTVT--PYYN--R---------PSQEGLYQHFKAIAEHTDLPQILYNVPSATGCDLLP-ET---VGRLAKVKNIIGIK 161 (292)
T ss_dssp EEEEEC--CCSS--C---------CCHHHHHHHHHHHHHTCSSCEEEEECHHHHSCCCCH-HH---HHHHHTSTTEEEEE
T ss_pred ceeccC--CCCC--C---------CCHHHHHHHHHHHhhccCCcEEEEEeccccCCccCH-HH---HHHHhcCCCEEEEE
Confidence 998863 4321 1 13466788888888888999988643321111 122 22 23333322333333
Q ss_pred EccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchhhHhhh
Q 017176 172 IHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 251 (376)
Q Consensus 172 vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~ 251 (376)
-+... ...+..+.+..++--.+..|+- +.....+..|++|.+.|-+.+ .|.++.+.++
T Consensus 162 ~~~~~------------------~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~G~~G~i~~~~~~-~p~~~~~i~~ 219 (292)
T d2a6na1 162 EATGN------------------LTRVNQIKELVSDDFVLLSGDD---ASALDFMQLGGHGVISVTANV-AARDMAQMCK 219 (292)
T ss_dssp ECSCC------------------TTHHHHHHTTSCTTSEEEECCG---GGHHHHHHTTCCEEEESGGGT-CHHHHHHHHH
T ss_pred eccCc------------------chhhhhhhhhcCCccEEeecch---hhhhhHhhCCceEEEeecchh-hhhchhhhhh
Confidence 22111 1222333333333334455532 334456668999999887764 4665555445
Q ss_pred hhhhC
Q 017176 252 TAIYG 256 (376)
Q Consensus 252 ~~~~g 256 (376)
....|
T Consensus 220 ~~~~g 224 (292)
T d2a6na1 220 LAAEG 224 (292)
T ss_dssp HHHTT
T ss_pred HhhcC
Confidence 44444
|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: CutC-like family: CutC-like domain: Copper homeostasis protein CutC species: Shigella flexneri [TaxId: 623]
Probab=89.24 E-value=5.6 Score=33.73 Aligned_cols=78 Identities=13% Similarity=0.135 Sum_probs=47.4
Q ss_pred HHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCC----CccHHHHHH
Q 017176 81 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD----HDSYNQLCD 156 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~----~~~~~~~~~ 156 (376)
+.|..+++.|+|-|||+.. - .. || |--...++.. +++.+++||.|=+|+-..+ ..+++.+.+
T Consensus 11 ~~a~~A~~~GAdRIELc~~---l---~~---GG-lTPS~g~i~~----~~~~~~iPv~vMIRPR~GdF~Ys~~E~~~M~~ 76 (247)
T d1twda_ 11 ECALTAQQNGADRVELCAA---P---KE---GG-LTPSLGVLKS----VRQRVTIPVHPIIRPRGGDFCYSDGEFAAILE 76 (247)
T ss_dssp HHHHHHHHTTCSEEEECBC---G---GG---TC-BCCCHHHHHH----HHHHCCSCEEEBCCSSSSCSCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEcCC---c---cc---CC-CCCCHHHHHH----HHHhcCCCeEEEEecCCCCCCCCHHHHHHHHH
Confidence 3556688899999999631 1 01 21 3334444444 4445679999888873222 134555555
Q ss_pred HHHHHhhcCCccEEEEc
Q 017176 157 FIYKVSSLSPTRHFIIH 173 (376)
Q Consensus 157 ~i~~~~e~~Gvd~I~vh 173 (376)
.+. .+.+.|+|.|.+-
T Consensus 77 di~-~~k~~G~dGvV~G 92 (247)
T d1twda_ 77 DVR-TVRELGFPGLVTG 92 (247)
T ss_dssp HHH-HHHHTTCSEEEEC
T ss_pred HHH-HHHHcCCCeEEEE
Confidence 544 4457999998864
|
| >d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Escherichia coli [TaxId: 562]
Probab=89.16 E-value=1.4 Score=38.25 Aligned_cols=127 Identities=10% Similarity=0.078 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 152 (376)
|.+.+.+-++.+.+.|.++|=++.. +|+ + ..-..+.-.++++.+.+.+ .+|+.+-+ .. .+.+
T Consensus 21 D~~~l~~~i~~l~~~Gv~gi~~~G~--------tGE-~--~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv----~~-~s~~ 84 (295)
T d1hl2a_ 21 DKASLRRLVQFNIQQGIDGLYVGGS--------TGE-A--FVQSLSEREQVLEIVAEEAKGKIKLIAHV----GC-VSTA 84 (295)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEESSG--------GGT-G--GGSCHHHHHHHHHHHHHHHTTTSEEEEEC----CC-SSHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECeE--------ccc-h--hhCCHHHHHHHHhhhHHhhccccceeecc----cc-chhh
Confidence 6788889999888889999988742 233 2 2223444455555555444 46777633 22 3455
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEe------cCCCCHHHHHHHH
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN------GGINTVDEVNAAL 226 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~n------GgI~s~~da~~~l 226 (376)
+.++. ++.+++.|+|++.+...... ..+. ..-.+++.+++.+.+++|++.. |--.+++.+.++.
T Consensus 85 ~~i~~-a~~a~~~Gad~~~v~~p~~~--~~~~-------~~~~~~~~~~~~~~~~~~ii~y~~P~~~g~~l~~~~l~~L~ 154 (295)
T d1hl2a_ 85 ESQQL-AASAKRYGFDAVSAVTPFYY--PFSF-------EEHCDHYRAIIDSADGLPMVVYNIPARSGVKLTLDQINTLV 154 (295)
T ss_dssp HHHHH-HHHHHHHTCSEEEEECCCSS--CCCH-------HHHHHHHHHHHHHHTTSCEEEEECHHHHCCCCCHHHHHHHH
T ss_pred HHHHH-HHHHHhcCCceeeeeecccc--CCCh-------HHHHHHHHHHhcccCcCcccccccccccccccccccccccc
Confidence 55554 55667899999998764311 0000 0113344555555556777642 3345667666665
Q ss_pred H
Q 017176 227 R 227 (376)
Q Consensus 227 ~ 227 (376)
+
T Consensus 155 ~ 155 (295)
T d1hl2a_ 155 T 155 (295)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >d1f6ya_ c.1.21.2 (A:) Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Methyltetrahydrofolate-utiluzing methyltransferases domain: Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR species: Moorella thermoacetica [TaxId: 1525]
Probab=89.13 E-value=0.66 Score=40.20 Aligned_cols=56 Identities=9% Similarity=0.061 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017176 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
.+++...+-|+...+.|+|.||||.|-+ .....+.+..++..+++.+++|++|-++
T Consensus 22 ~d~~~~~~~A~~m~~~GAdiIDIg~g~~-------------~~~e~e~~~~vi~~l~~~~~vpiSIDT~ 77 (262)
T d1f6ya_ 22 RDPAPVQEWARRQEEGGARALDLNVGPA-------------VQDKVSAMEWLVEVTQEVSNLTLCLDST 77 (262)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEEBCC-----------------CHHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeCCCCC-------------CCCHHHHHHHHHHHHHHhhcCCccccCC
Confidence 4678888888888888999999985422 2233567778888888888999998543
|
| >d1jpdx1 c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Escherichia coli [TaxId: 562]
Probab=89.01 E-value=0.82 Score=37.92 Aligned_cols=123 Identities=10% Similarity=0.036 Sum_probs=75.6
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCC
Q 017176 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGV 145 (376)
Q Consensus 67 ~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~ 145 (376)
....|.-.+|+.+++.|+.+.+.||..+-|..|- . . -.+.++++|+.+ +..+.+-.--+|
T Consensus 8 ~~~tv~~~tpe~~~~~a~~~~~~G~~~~KiKvg~---------~------~----d~~~i~~ir~~~~d~~l~vDaN~~~ 68 (208)
T d1jpdx1 8 TAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDN---------H------L----ISERMVAIRTAVPDATLIVDANESW 68 (208)
T ss_dssp BCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCS---------S------C----HHHHHHHHHHHCTTSEEEEECTTCC
T ss_pred eeeEcCCCCHHHHHHHHHHHHHCCCCEEEEECCC---------C------c----HHHHHHHHHHhccccEEEEeccccc
Confidence 3445555679999999998888899999885431 0 1 245567777766 344444444456
Q ss_pred CCCccHHHHHHHHHHHhhcCCccEEE--EccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHH
Q 017176 146 DDHDSYNQLCDFIYKVSSLSPTRHFI--IHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 223 (376)
Q Consensus 146 ~~~~~~~~~~~~i~~~~e~~Gvd~I~--vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~ 223 (376)
+. . +.+++ .+.+++.++.+|- ++.. + ++.+.++ + ..+||.+.-++.+..++.
T Consensus 69 s~-~---~A~~~-~~~l~~~~l~~iEeP~~~~----------d--------~~~~~~l-~--~~~pi~~~E~~~~~~~~~ 122 (208)
T d1jpdx1 69 RA-E---GLAAR-CQLLADLGVAMLEQPLPAQ----------D--------DAALENF-I--HPLPICADESCHTRSNLK 122 (208)
T ss_dssp CS-T---THHHH-HHHHHHTTCCEEECCSCTT----------S--------CGGGGSS-C--CSSCEEESTTCSSGGGHH
T ss_pred ch-h---HHHHH-HHHHHhccccccCccCCcc----------C--------HHHHHhh-h--cccceecCCCcCCHHHHH
Confidence 53 2 23333 3445678888765 2111 0 1111111 1 268999999999999987
Q ss_pred HHHHcCcCeeEE
Q 017176 224 AALRKGAHHVMV 235 (376)
Q Consensus 224 ~~l~~Gad~Vmi 235 (376)
++. ..+|.+++
T Consensus 123 ~l~-~~~d~~~~ 133 (208)
T d1jpdx1 123 ALK-GRYEMVNI 133 (208)
T ss_dssp HHB-TTBSEEEE
T ss_pred HHh-hccCEEEe
Confidence 763 45777665
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=88.90 E-value=4.5 Score=34.69 Aligned_cols=126 Identities=12% Similarity=0.094 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 152 (376)
|.+.+.+-++.+.+.|+++|=++.. +|+ +.+| ..+.=.++++.+.+.+ .+||.+-+. . .+..
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gi~v~Gs--------tGE-~~~L--s~~Er~~~~~~~~~~~~~~~~vi~gv~----~-~st~ 83 (295)
T d1o5ka_ 20 DLESYERLVRYQLENGVNALIVLGT--------TGE-SPTV--NEDEREKLVSRTLEIVDGKIPVIVGAG----T-NSTE 83 (295)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSG--------GGT-GGGC--CHHHHHHHHHHHHHHHTTSSCEEEECC----C-SCHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECee--------ccc-hhhC--CHHHHHHHhhhhccccccCCceEeecc----c-ccHH
Confidence 6778888888888899999977531 333 3333 2222344555554443 467877433 2 3344
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE-e-----cCCCCHHHHHHHH
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-N-----GGINTVDEVNAAL 226 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~-n-----GgI~s~~da~~~l 226 (376)
+.++. ++.+++.|+|++.+..-. +...+. ..-++++.++.+. +++||+. | |--.+++.+.+.+
T Consensus 84 ~ai~~-a~~A~~~Gad~v~v~pP~--y~~~s~-------~~i~~~~~~ia~a-~~~pi~iYn~P~~~g~~~~~~~~~~l~ 152 (295)
T d1o5ka_ 84 KTLKL-VKQAEKLGANGVLVVTPY--YNKPTQ-------EGLYQHYKYISER-TDLGIVVYNVPGRTGVNVLPETAARIA 152 (295)
T ss_dssp HHHHH-HHHHHHHTCSEEEEECCC--SSCCCH-------HHHHHHHHHHHTT-CSSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred HHHHH-HHHHHHcCCCEEEEeCCC--CCCCCH-------HHHHHHHHHHHhc-cCCCeeEEeccchhcccchhHHHHHHH
Confidence 55553 556778999999997642 111110 1114566666654 5788765 2 6677888888776
Q ss_pred H
Q 017176 227 R 227 (376)
Q Consensus 227 ~ 227 (376)
+
T Consensus 153 ~ 153 (295)
T d1o5ka_ 153 A 153 (295)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >d1wdda1 c.1.14.1 (A:151-475) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=88.70 E-value=0.74 Score=41.21 Aligned_cols=145 Identities=16% Similarity=0.089 Sum_probs=86.2
Q ss_pred CCCCEEEEec----CCCHHHHHHHHHHHHHCCCCEEEe--cCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCcc
Q 017176 63 EQHPIVLQIG----GSNLDNLAKATELANAYNYDEINL--NCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 136 (376)
Q Consensus 63 ~~~p~~vQL~----g~~~~~~~~aa~~~~~~G~d~Iei--N~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~p 136 (376)
.++|++.-+. |-+|+.+++.+..+...|.|.|-= ++..|. -+-+..|.+.+.+.++...+.++..
T Consensus 15 ~~RPLlgtiiKP~~Glsp~~~a~~~~~~~~GGvD~IKDDE~l~~~~---------~~p~~eRv~~~~~av~~a~~eTG~~ 85 (325)
T d1wdda1 15 YGRPLLGCTIKPKLGLSAKNYGRACYECLRGGLDFTKDDENVNSQP---------FMRWRDRFVFCAEAIYKSQAETGEI 85 (325)
T ss_dssp CSSCEEECBCSSSSCCCHHHHHHHHHHHHHTTCSEEECCTTCSSBT---------TBCHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCeEEeecCCCCCCCHHHHHHHHHHHHccCCceeeCCcccCCCC---------CcchHHHHHHHHHHHHHHHHhhCCc
Confidence 6889888876 668999999999999999999833 332221 1223345556666666666666543
Q ss_pred EEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHH---HHHHhhCCCCeEEE-
Q 017176 137 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY---YALLRDFPDLTFTL- 212 (376)
Q Consensus 137 v~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v---~~~~~~~~~ipVi~- 212 (376)
...-..+ .. .+.+++.+.. +.+.++|++.+.+..-+ .| |..+ ++..++. ++|+.+
T Consensus 86 k~y~~ni--t~-~~~~em~~ra-~~a~e~G~~~~mi~~~~---~G-------------~~a~~~l~~~~~~~-~l~ih~H 144 (325)
T d1wdda1 86 KGHYLNA--TA-GTCEEMIKRA-VFARELGVPIVMHDYLT---GG-------------FTANTSLAHYCRDN-GLLLHIH 144 (325)
T ss_dssp CEEEEEC--CC-SSHHHHHHHH-HHHHHHTCSEEEEEHHH---HC-------------HHHHHHHHHHHHHH-TCEEEEE
T ss_pred eeEEecc--CC-CCHHHHHHHH-HHHHHcCCCEEEEeccc---cc-------------HHHHHHHHHhhhhc-Cceeecc
Confidence 3222222 21 2344555543 33456899888765322 12 3333 3333332 678776
Q ss_pred -----------ecCCCCHHHHHHHHH-cCcCeeEEchH
Q 017176 213 -----------NGGINTVDEVNAALR-KGAHHVMVGRA 238 (376)
Q Consensus 213 -----------nGgI~s~~da~~~l~-~Gad~VmiGRa 238 (376)
+-|| +..-..++.+ .|||.+.++..
T Consensus 145 ra~~ga~tr~~~~Gi-s~~vl~kl~RLaGaD~ih~~~~ 181 (325)
T d1wdda1 145 RAMHAVIDRQKNHGM-HFRVLAKALRMSGGDHIHAGTV 181 (325)
T ss_dssp CTTHHHHHSCSSSEE-CHHHHHHHHHHHCCSEEECCCS
T ss_pred cccccccccCCCCCc-cHHHHHHHHHHcCCCccccCcc
Confidence 4566 4445556666 89999988765
|
| >d1oy0a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.67 E-value=2.7 Score=36.10 Aligned_cols=155 Identities=14% Similarity=0.084 Sum_probs=80.5
Q ss_pred CCChHHHHHHHHHhCCCcEEEecceeecccccccchh-----hhh------hccCCCCCCEEEEe-cC---CCHHHH-HH
Q 017176 18 DWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNL-----DRF------LAFSPEQHPIVLQI-GG---SNLDNL-AK 81 (376)
Q Consensus 18 ~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~-----~~~------~~~~~~~~p~~vQL-~g---~~~~~~-~~ 81 (376)
+.-|.++..++.+.| ++++.++=....- +.+.+++ +.+ +.......-+++-+ |+ .++++. ..
T Consensus 23 TaYD~~~A~~~~~ag-iDiiLVGDSlgmv-~~G~~~T~~Vt~d~m~~H~~aV~rga~~~~iv~DmPf~s~~~s~~~a~~n 100 (262)
T d1oy0a_ 23 TAYDYSTARIFDEAG-IPVLLVGDSAANV-VYGYDTTVPISIDELIPLVRGVVRGAPHALVVADLPFGSYEAGPTAALAA 100 (262)
T ss_dssp ECCSHHHHHHHHTTT-CCEEEECTTHHHH-TTCCSSSSSCCGGGTHHHHHHHHHHCTTSEEEEECCTTSSTTCHHHHHHH
T ss_pred eCCCHHHHHHHHHcC-CCEEEEcCchhhh-hcCCCCcceeeHHHHHHHHHHHHhccccceeEecchhhhcccchHHHHHH
Confidence 445889999988886 8988765111000 0111110 111 01111223344444 22 345544 45
Q ss_pred HHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCC---------CCC---Cc
Q 017176 82 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG---------VDD---HD 149 (376)
Q Consensus 82 aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g---------~~~---~~ 149 (376)
|.+.+++.|+|.|-|-.| . ...++++.+.+. ++||.--+.+- +.- ..
T Consensus 101 A~r~~~~~ga~avkleg~-------------~-------~~~~~I~~L~~~-gIPV~gHiGLtPQ~~~~~Gg~r~~Gk~~ 159 (262)
T d1oy0a_ 101 ATRFLKDGGAHAVKLEGG-------------E-------RVAEQIACLTAA-GIPVMAHIGFTPQSVNTLGGFRVQGRGD 159 (262)
T ss_dssp HHHHHHTTCCSEEEEEBS-------------G-------GGHHHHHHHHHH-TCCEEEEEECCC--------------CH
T ss_pred HHHHHhccccceeeechh-------------h-------hhHHHHHHHHhc-CCceEEeeeecceeeeecCccceeccch
Confidence 556778899999977421 0 123444444432 67776544331 110 01
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecC
Q 017176 150 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 215 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGg 215 (376)
+-.++++. ++.++++|+..|.+.+-. .+...++.+.. +||+|+-|.
T Consensus 160 ~~~~l~~d-a~~le~AGa~~ivlE~Vp------------------~~la~~It~~~-~IPtIGIGA 205 (262)
T d1oy0a_ 160 AAEQTIAD-AIAVAEAGAFAVVMEMVP------------------AELATQITGKL-TIPTVGIGA 205 (262)
T ss_dssp HHHHHHHH-HHHHHHHTCSEEEEESCC------------------HHHHHHHHHHC-SSCEEEESS
T ss_pred hhhHhHHH-HHHHHhCCcEEEeccccc------------------HhHHHHHHhhC-CceEEEecc
Confidence 12233333 456688999999987532 34445666654 999998774
|
| >d1jdfa1 c.1.11.2 (A:138-446) D-glucarate dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: D-glucarate dehydratase species: Escherichia coli [TaxId: 562]
Probab=88.58 E-value=2.9 Score=36.69 Aligned_cols=127 Identities=13% Similarity=0.086 Sum_probs=78.4
Q ss_pred CCHHHHHHHHHHHHH-CCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC-ccEEEEecCCCCCCccH
Q 017176 74 SNLDNLAKATELANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSY 151 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~-~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~-~pv~vKiR~g~~~~~~~ 151 (376)
.+|+.+++-|+.+.+ .||+.+-|..| . ..++.-.+.|+++++.++ ..+.|-..-+| +.
T Consensus 46 ~~p~~~~~~a~~~~~~~Gf~~~KiKvG----------~------~~~~~di~~v~avr~~~pd~~l~vDaN~~~----s~ 105 (309)
T d1jdfa1 46 MTPDAVVRLAEAAYEKYGFNDFKLKGG----------V------LAGEEEAESIVALAQRFPQARITLDPNGAW----SL 105 (309)
T ss_dssp CSHHHHHHHHHHHHHHHCCSCEEEECS----------S------SCHHHHHHHHHHHHHHCTTSCEEEECTTBB----CH
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEECC----------C------CCHHHHHHHHHHHHHHCCCCeEEeeccCCC----CH
Confidence 368999888887765 59999987432 1 235556778888888763 34444333334 34
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCc
Q 017176 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGA 230 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Ga 230 (376)
++.+++ .+.++ .++.++- ... .+.+ .....+.++++.+.. ++||.+.-.+.+..++.++++ ..+
T Consensus 106 ~~Ai~~-~~~le-~~l~w~E----EPv----~~~d----~~~~~~~l~~lr~~~-~ipIa~gE~~~~~~~~~~~i~~~a~ 170 (309)
T d1jdfa1 106 NEAIKI-GKYLK-GSLAYAE----DPC----GAEQ----GFSGREVMAEFRRAT-GLPTATNMIATDWRQMGHTLSLQSV 170 (309)
T ss_dssp HHHHHH-HHHTT-TTCSCEE----SCB----CCBT----TBCHHHHHHHHHHHH-CCCEEESSSSSSHHHHHHHHHHTCC
T ss_pred HHHHHH-HHHHh-hcchhhh----hhc----ccCc----chhhHHHHHHhhccc-ccceecCcccchhhhhhhhhhhccc
Confidence 455553 44555 4666654 100 0000 001144556666654 899999999999999999998 557
Q ss_pred CeeEE
Q 017176 231 HHVMV 235 (376)
Q Consensus 231 d~Vmi 235 (376)
|.++.
T Consensus 171 di~~~ 175 (309)
T d1jdfa1 171 DIPLA 175 (309)
T ss_dssp SEEBC
T ss_pred eeeec
Confidence 75554
|
| >d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I DAHP synthetase domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) species: Thermotoga maritima [TaxId: 2336]
Probab=88.19 E-value=2.2 Score=38.21 Aligned_cols=115 Identities=18% Similarity=0.199 Sum_probs=65.7
Q ss_pred ccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccC-ccccCCCCCCCCCC
Q 017176 111 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR-KALLNGISPAENRT 189 (376)
Q Consensus 111 yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r-~~~~~g~~~~~~~~ 189 (376)
-|+.++++.+++.++- .++.||.+|--.. .+++++...+..+. ..|-..|.+--| +....+. .
T Consensus 183 I~A~~~~n~~LL~~~g-----~t~kpV~lKkG~~----~s~~e~l~aae~i~-~~Gn~~vilcERG~~t~~~~------~ 246 (338)
T d1vr6a1 183 IGARNAQNFRLLSKAG-----SYNKPVLLKRGFM----NTIEEFLLSAEYIA-NSGNTKIILCERGIRTFEKA------T 246 (338)
T ss_dssp ECGGGTTCHHHHHHHH-----TTCSCEEEECCTT----CCHHHHHHHHHHHH-HTTCCCEEEEECCBCCSCCS------S
T ss_pred echhhccCHHHHHHhh-----ccCCcEEecCccc----cchhhhhhhHHHHH-hcCCccceeeeccccccccc------c
Confidence 3677777776655432 2588999995432 34556655444444 577777766433 3211111 1
Q ss_pred CCcccHHHHHHHHhhCCCCeEEEe----cCCCCH--HHHHHHHHcCcCeeEEchHHhhCCc
Q 017176 190 IPPLKYEYYYALLRDFPDLTFTLN----GGINTV--DEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 190 ~~~~~~~~v~~~~~~~~~ipVi~n----GgI~s~--~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
...+++..+..+++. .+.|||.+ ||-+.. .-+..+++.||||++|=. --||.
T Consensus 247 ~~~lD~~~i~~~k~~-~~lPVi~DpsHs~G~r~~v~~larAAvA~GadGl~iE~--Hp~P~ 304 (338)
T d1vr6a1 247 RNTLDISAVPIIRKE-SHLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEV--HPEPE 304 (338)
T ss_dssp SSBCCTTHHHHHHHH-BSSCEEECHHHHHCSGGGHHHHHHHHHHHTCSEEEEEB--CSCGG
T ss_pred ccchhhcccceeecc-ccCceeeCCCCCCCchhHHHHHHHHHHHhCCCEEEEEe--CCCcc
Confidence 112234455555544 48999974 544333 345566778999999964 34554
|
| >d1nsja_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Thermotoga maritima [TaxId: 2336]
Probab=88.01 E-value=5.8 Score=32.29 Aligned_cols=178 Identities=10% Similarity=0.069 Sum_probs=89.8
Q ss_pred CCCChHHHHHHHHHhCCCcEEEecceeecccccc--cchhhhhhccCCCCCCEEEEecCC-CHHHHHHHHHHHHHCCCCE
Q 017176 17 MDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ--QGNLDRFLAFSPEQHPIVLQIGGS-NLDNLAKATELANAYNYDE 93 (376)
Q Consensus 17 ~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~--~~~~~~~~~~~~~~~p~~vQL~g~-~~~~~~~aa~~~~~~G~d~ 93 (376)
+|+|+..-..+|.++| ++++. ++....--+. .....++....+.. ...|=++.+ +.+... ..+++.++|.
T Consensus 7 CGit~~~da~~~~~~g-ad~iG--fI~~~~SpR~Vs~~~a~~i~~~~~~~-~~~V~V~v~~~~~~i~---~~~~~~~~~~ 79 (205)
T d1nsja_ 7 CGITNLEDALFSVESG-ADAVG--FVFYPKSKRYISPEDARRISVELPPF-VFRVGVFVNEEPEKIL---DVASYVQLNA 79 (205)
T ss_dssp CCCCSHHHHHHHHHHT-CSEEE--EECCTTCTTBCCHHHHHHHHHHSCSS-SEEEEEESSCCHHHHH---HHHHHHTCSE
T ss_pred cCCCcHHHHHHHHhCC-CCEEe--EeccCCCCCccCHHHHHHHHhhhccc-ceeeccccccHHHHHH---hhhhhccccc
Confidence 6889998888888886 76553 4433211111 11122332222222 233334444 444333 3455668999
Q ss_pred EEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEc
Q 017176 94 INLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH 173 (376)
Q Consensus 94 IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh 173 (376)
|.+|...| +++. +.+++.. ++...... .+ ..+. ....+ .-.+.+.+.
T Consensus 80 vQlhg~e~-----------------~~~~----~~~~~~~--~~~~~~~~--~~---~~~~----~~~~~-~~~~~~l~d 126 (205)
T d1nsja_ 80 VQLHGEEP-----------------IELC----RKIAERI--LVIKAVGV--SN---ERDM----ERALN-YREFPILLD 126 (205)
T ss_dssp EEECSCCC-----------------HHHH----HHHHTTS--EEEEEEEE--SS---HHHH----HHHGG-GTTSCEEEE
T ss_pred hhccchhh-----------------HHHH----hhcccce--eeeeeccc--cc---hHHH----HHHhh-cccceeeec
Confidence 99984221 2222 2333332 22222221 22 1111 12222 223444444
Q ss_pred cCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHhhCCc
Q 017176 174 SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 174 ~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~ 244 (376)
......+|.+. ..+|..+..+... ..|++..||| +++.+.++++ .++++|=+-+|+=..|-
T Consensus 127 ~~~~~~GGtG~-------~~dw~~~~~~~~~--~~~~~LAGGl-~~~Nv~~ai~~~~p~gvDvsSgvE~~~G 188 (205)
T d1nsja_ 127 TKTPEYGGSGK-------TFDWSLILPYRDR--FRYLVLSGGL-NPENVRSAIDVVRPFAVDVSSGVEAFPG 188 (205)
T ss_dssp ESCSSSSSCCS-------CCCGGGTGGGGGG--SSCEEEESSC-CTTTHHHHHHHHCCSEEEESGGGEEETT
T ss_pred cccccCCCCCc-------ccchhhcccchhc--ccceeeecCC-CHHHHHHHHHHhCCCEEEEcCcccCCCC
Confidence 33333333221 1235444443332 3589999999 7888888887 88999999888755453
|
| >d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: NTRC receiver domain species: Salmonella typhimurium [TaxId: 90371]
Probab=87.74 E-value=1.6 Score=32.75 Aligned_cols=45 Identities=16% Similarity=0.249 Sum_probs=38.4
Q ss_pred HHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 195 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 195 ~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
++.+.++.+..+++|||...+-.+.+++.++++.||+. ++..|+-
T Consensus 63 ~el~~~l~~~~~~~piI~~t~~~~~~~~~~a~~~Ga~d------yl~KP~~ 107 (123)
T d1krwa_ 63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFD------YLPKPFD 107 (123)
T ss_dssp HHHHHHHHHHSSSCCEEESCCCSCHHHHHHHHHHTEEE------ECSSCCH
T ss_pred HHHHHHHHHhCCCCeEEEEecCCCHHHHHHHHHcCCCe------EEeCcCC
Confidence 77888888888899999999999999999999999876 4457853
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.66 E-value=4.2 Score=35.10 Aligned_cols=126 Identities=9% Similarity=-0.008 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 152 (376)
|.+.+.+-++.+.+.|+++|=++.. +|+ +.+| ..+.-.++++.+.+.+ .+|+.+- ... .+.+
T Consensus 26 D~~~l~~~i~~li~~Gv~Gi~v~G~--------tGE-~~~L--s~eEr~~l~~~~~~~~~~~~~vi~g----~~~-~s~~ 89 (296)
T d1xxxa1 26 DTATAARLANHLVDQGCDGLVVSGT--------TGE-SPTT--TDGEKIELLRAVLEAVGDRARVIAG----AGT-YDTA 89 (296)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESST--------TTT-TTTS--CHHHHHHHHHHHHHHHTTTSEEEEE----CCC-SCHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECee--------ccc-hhhC--CHHHHHHHHHHHHHHhccccceEec----ccc-chhH
Confidence 6788889999999999999988642 233 2222 2233344444444433 3577663 222 3455
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEe------cCCCCHHHHHHHH
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN------GGINTVDEVNAAL 226 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~n------GgI~s~~da~~~l 226 (376)
+.++. ++.+++.|+|++.+..-.-. . .+ + ..-.+++.++.+. .++||+.= |-..+++.+.++.
T Consensus 90 ~~i~~-a~~a~~~Gad~v~i~~P~~~-~-~~--~-----~~l~~~~~~v~~~-~~~pi~lYn~p~~~g~~~~~~~~~~L~ 158 (296)
T d1xxxa1 90 HSIRL-AKACAAEGAHGLLVVTPYYS-K-PP--Q-----RGLQAHFTAVADA-TELPMLLYDIPGRSAVPIEPDTIRALA 158 (296)
T ss_dssp HHHHH-HHHHHHHTCSEEEEECCCSS-C-CC--H-----HHHHHHHHHHHTT-CSSCEEEEECHHHHSSCCCHHHHHHHH
T ss_pred HHHHH-HHHHHHhcCCeEEEEeccCC-C-CC--H-----HHHHHHHHHHHHh-cCCCEEEEECccccCCCCCHHHHHHhc
Confidence 66654 55677899999988753211 0 00 0 1114566677665 47888752 4446777776665
Q ss_pred H
Q 017176 227 R 227 (376)
Q Consensus 227 ~ 227 (376)
+
T Consensus 159 ~ 159 (296)
T d1xxxa1 159 S 159 (296)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=87.09 E-value=1.1 Score=39.59 Aligned_cols=74 Identities=11% Similarity=0.033 Sum_probs=47.6
Q ss_pred HHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE--ecCCCCHHHHHHHHHcCcCeeEEc
Q 017176 160 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL--NGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~--nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
+..++.|.+++.+|.-..... .... ........++.+.++++.. +.|++. .|.+.+++++.++.+.|||+|.++
T Consensus 114 ~~~~~~g~~ai~~~~~~~~~~-~~~~-~~~~~~~~~~~i~~i~~~~-~~~vivk~v~~~~~~~~a~~~~~~GaD~i~v~ 189 (329)
T d1p0ka_ 114 EAVEMIGANALQIHLNVIQEI-VMPE-GDRSFSGALKRIEQICSRV-SVPVIVKEVGFGMSKASAGKLYEAGAAAVDIG 189 (329)
T ss_dssp HHHHHTTCSEEEEEECTTTTC----------CTTHHHHHHHHHHHC-SSCEEEEEESSCCCHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCEEEecccccchh-hhcc-ccccccchHHHHHHHHHHc-CCCcEEEecCCcchHHHHHHHHhcCCCEEEEc
Confidence 344678999998875432110 0000 0011222367777777765 667765 889999999999999999999983
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=86.81 E-value=2.7 Score=36.24 Aligned_cols=126 Identities=15% Similarity=0.072 Sum_probs=73.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 152 (376)
|.+.+.+-++.+.+.|+++|=++.. +|+ +.+| ..+.=.++++.+.+.+ .+|+.+-+. . .+..
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gl~~~Gs--------tGE-~~~L--s~~Er~~~~~~~~~~~~~~~~vi~g~~----~-~s~~ 83 (292)
T d2a6na1 20 CRASLKKLIDYHVASGTSAIVSVGT--------TGE-SATL--NHDEHADVVMMTLDLADGRIPVIAGTG----A-NATA 83 (292)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESST--------TTT-GGGS--CHHHHHHHHHHHHHHHTTSSCEEEECC----C-SSHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECee--------ccc-hhhC--CHHHHHHHhhhhhhhccccceeEeecc----c-chHH
Confidence 6788999999998899999988742 233 3222 2222234444444433 367777432 2 2345
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE-e-----cCCCCHHHHHHHH
Q 017176 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-N-----GGINTVDEVNAAL 226 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~-n-----GgI~s~~da~~~l 226 (376)
+.++. ++.+++.|+|++.+..- .+...+. ..-++++.++.+. .++||+. | |--.+++...++.
T Consensus 84 ~~i~~-~~~a~~~Gad~~~~~pP--~~~~~~~-------~~i~~~f~~v~~~-~~~pi~iYn~P~~~g~~~~~e~~~~L~ 152 (292)
T d2a6na1 84 EAISL-TQRFNDSGIVGCLTVTP--YYNRPSQ-------EGLYQHFKAIAEH-TDLPQILYNVPSATGCDLLPETVGRLA 152 (292)
T ss_dssp HHHHH-HHTTTTSSCCEEEEECC--CSSCCCH-------HHHHHHHHHHHHT-CSSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred HHHHH-hccHHhcCCcceeccCC--CCCCCCH-------HHHHHHHHHHhhc-cCCcEEEEEeccccCCccCHHHHHHHh
Confidence 55554 55678899999988752 1111110 1114566667665 4888864 3 4456777777665
Q ss_pred H
Q 017176 227 R 227 (376)
Q Consensus 227 ~ 227 (376)
+
T Consensus 153 ~ 153 (292)
T d2a6na1 153 K 153 (292)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=86.38 E-value=3.7 Score=31.09 Aligned_cols=64 Identities=14% Similarity=0.163 Sum_probs=47.6
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
.+...|.|.+.-.-+ +.++ ++.+..+++..+++|||..-+-.+.+.+.++++.||+.... .
T Consensus 41 ~~~~~dlvilD~~mp---~~~G----------~e~~~~lr~~~~~~piI~lT~~~~~~~~~~a~~~Ga~dyl~------K 101 (137)
T d1ny5a1 41 SEKHFNVVLLDLLLP---DVNG----------LEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLT------K 101 (137)
T ss_dssp HHSCCSEEEEESBCS---SSBH----------HHHHHHHHHHCTTSEEEEEEETTCHHHHHHHHTTTCCEEEE------E
T ss_pred hccccccchHHHhhh---hhhH----------HHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHcCCCEEEe------C
Confidence 345688877764322 1111 67788887777899999988889999999999999998655 7
Q ss_pred Cch
Q 017176 243 PWY 245 (376)
Q Consensus 243 P~l 245 (376)
|+-
T Consensus 102 P~~ 104 (137)
T d1ny5a1 102 PCM 104 (137)
T ss_dssp SCC
T ss_pred CCC
Confidence 864
|
| >d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Escherichia coli [TaxId: 562]
Probab=86.23 E-value=4.5 Score=34.69 Aligned_cols=139 Identities=11% Similarity=0.035 Sum_probs=86.4
Q ss_pred EEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCcc-EEEEecCCCC
Q 017176 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP-VSVKCRIGVD 146 (376)
Q Consensus 68 ~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~p-v~vKiR~g~~ 146 (376)
+++|...|. ..|+.+.++|.|.|=+. -....+. .| |-.-+.-..+.+..-.++|++..... +.+-+..+-.
T Consensus 17 i~~lTayD~----~~A~~~~~agvDiiLVG--DSlgmv~-~G-~~~T~~vt~d~mi~H~~aV~rga~~~~vv~DmPf~sy 88 (262)
T d1m3ua_ 17 FATITAYDY----SFAKLFADEGLNVMLVG--DSLGMTV-QG-HDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFMAY 88 (262)
T ss_dssp EEEEECCSH----HHHHHHHHHTCCEEEEC--TTHHHHT-TC-CSSSTTCCHHHHHHHHHHHHHHCTTSEEEEECCTTSS
T ss_pred EEEEEcCCH----HHHHHHHHCCCCEEEEc--CcHHhcc-cC-CCCcceechHhHHHHHHHHHhccccceeEeccccccc
Confidence 467888874 36778888999999773 2222221 12 23344456678888888888766444 4455555432
Q ss_pred CCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEe-----------cC
Q 017176 147 DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN-----------GG 215 (376)
Q Consensus 147 ~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~n-----------Gg 215 (376)
.+.++..+...++. ++|+|+|-+.|+... .+.++.+.++ +|||++- ||
T Consensus 89 --~~~~~a~~~a~~l~-~~GAdaVKlEgg~~~----------------~~~I~~L~~~--gIPV~gHiGL~PQ~~~~~GG 147 (262)
T d1m3ua_ 89 --ATPEQAFENAATVM-RAGANMVKIEGGEWL----------------VETVQMLTER--AVPVCGHLGLTPQSVNIFGG 147 (262)
T ss_dssp --SSHHHHHHHHHHHH-HTTCSEEECCCSGGG----------------HHHHHHHHHT--TCCEEEEEESCGGGHHHHTS
T ss_pred --hhhHHHHHHHHHHH-hcCCcEEEeccchhH----------------HHHHHHHHHc--CCeEEeehhhchhhhhhcCC
Confidence 33445555555555 599999998876421 4566777765 8999874 44
Q ss_pred C----CCHHHHHHHH------H-cCcCeeEE
Q 017176 216 I----NTVDEVNAAL------R-KGAHHVMV 235 (376)
Q Consensus 216 I----~s~~da~~~l------~-~Gad~Vmi 235 (376)
. .|.+++.+++ + .||.++.+
T Consensus 148 ~r~qGkt~~ea~~l~~~a~~le~AGaf~ivl 178 (262)
T d1m3ua_ 148 YKVQGRGDEAGDQLLSDALALEAAGAQLLVL 178 (262)
T ss_dssp SCCCCCSHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred ccccCccHHHHHHHHHHHHHHHhhcceEEEE
Confidence 2 4556554433 2 68888875
|
| >d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Escherichia coli [TaxId: 562]
Probab=85.96 E-value=5.1 Score=29.48 Aligned_cols=44 Identities=11% Similarity=0.118 Sum_probs=37.9
Q ss_pred HHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017176 195 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 195 ~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
++.+.++++..+++|||...+-.+.++..++++.||+... ..|+
T Consensus 60 ~e~~~~i~~~~~~~pvi~lt~~~~~~~~~~a~~~Ga~~yl------~KP~ 103 (119)
T d2pl1a1 60 LSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYV------TKPF 103 (119)
T ss_dssp HHHHHHHHHTTCCSCEEEEESCCCHHHHHHHHHTTCSEEE------ESSC
T ss_pred HHHHHHHHhcCcccceEeeeccCCHHHHHHHHHcCCCEEE------ECCC
Confidence 7788888877778999999999999999999999999854 4775
|
| >d2d69a1 c.1.14.1 (A:134-424) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=85.82 E-value=2.5 Score=37.02 Aligned_cols=143 Identities=15% Similarity=0.104 Sum_probs=86.6
Q ss_pred CCCCEEEEec----CCCHHHHHHHHHHHHHCCCCEEEe--cCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCcc
Q 017176 63 EQHPIVLQIG----GSNLDNLAKATELANAYNYDEINL--NCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 136 (376)
Q Consensus 63 ~~~p~~vQL~----g~~~~~~~~aa~~~~~~G~d~Iei--N~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~p 136 (376)
.++|++.-+. |-+|+++++.+..+...|.|.|-= ++..|. -+-+..|.+.+.+.++...+.++..
T Consensus 17 ~~RPL~~tiiKP~~Gls~~~~a~~~~~~~~GGvD~IKDDe~l~~~~---------~~p~~eRv~~~~~a~~~a~~~tG~~ 87 (291)
T d2d69a1 17 KDRPLTATVPKPKMGWSVEEYAEIAYELWSGGIDLLKDDENFTSFP---------FNRFEERVRKLYRVRDRVEAETGET 87 (291)
T ss_dssp CSSCEEEECCSSSSCCCHHHHHHHHHHHHHTTCSEEECCTTCSCBT---------TBCHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCceEEeeeCCcCCCCHHHHHHHHHHHHccCCceecCCccCCCCC---------CCCHHHHHHHHHHHHHHHHHHhCCe
Confidence 5889988876 668999999999999999999832 222211 1223456666777777766667655
Q ss_pred EEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHH---hhCCCCeEEEe
Q 017176 137 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL---RDFPDLTFTLN 213 (376)
Q Consensus 137 v~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~---~~~~~ipVi~n 213 (376)
...-..+ +. +.+++.+.. +.+.+.|+.++.|..-+. | |..+..+. +. ..+||.+-
T Consensus 88 ~~Ya~Ni--t~--~~~~m~~ra-~~~~~~G~~~vmi~~~~~---G-------------~~al~~l~~~~~~-~~l~ih~H 145 (291)
T d2d69a1 88 KEYLINI--TG--PVNIMEKRA-EMVANEGGQYVMIDIVVA---G-------------WSALQYMREVTED-LGLAIHAH 145 (291)
T ss_dssp CEEECBC--CS--SHHHHHHHH-HHHHHHTCCEEEEEHHHH---C-------------HHHHHHHHHHHHH-HTCEEEEE
T ss_pred eEEEEec--cC--CHHHHHHHH-HHHHHcCCCEEEeccccc---c-------------hHHHHHHHHhhcc-ccceeeec
Confidence 4433333 32 355665543 344578998887764321 1 33333333 22 25666553
Q ss_pred ------------cCCCCHHHHHHHHH-cCcCeeEEch
Q 017176 214 ------------GGINTVDEVNAALR-KGAHHVMVGR 237 (376)
Q Consensus 214 ------------GgI~s~~da~~~l~-~Gad~VmiGR 237 (376)
.|| +..-..++.+ .|+|.+.++.
T Consensus 146 ra~~g~~~r~~~~Gi-s~~v~~kL~RLaGaD~ih~~~ 181 (291)
T d2d69a1 146 RAMHAAFTRNPRHGI-TMLALAKAARMIGVDQIHTGT 181 (291)
T ss_dssp CTTTHHHHSCTTSEE-CHHHHHHHHHHHTCSEEECCC
T ss_pred ccccceeccCCCCcc-cHHHHHHHHHHcCCCeeecCC
Confidence 234 4444555556 8999999876
|
| >d1bwva1 c.1.14.1 (A:150-478) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Galdieria partita [TaxId: 83374]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Galdieria partita [TaxId: 83374]
Probab=85.36 E-value=4.8 Score=35.66 Aligned_cols=204 Identities=13% Similarity=0.181 Sum_probs=109.6
Q ss_pred cEEEc---cCCCCChHHHHHHH--HHhCCCcEEE-ecceeecccccccchhhhhhc-----cCCC--CCCEEEEecCCCH
Q 017176 10 WFSVA---PMMDWTDNHYRTLA--RLISKHAWLY-TEMLAAETIIYQQGNLDRFLA-----FSPE--QHPIVLQIGGSNL 76 (376)
Q Consensus 10 ri~lA---PM~~~td~~~r~~~--~~~Gg~gl~~-te~v~~~~~~~~~~~~~~~~~-----~~~~--~~p~~vQL~g~~~ 76 (376)
|++++ |..|.|...+..++ ...||+++|= -|.+....+..-.+......+ ..++ ..-..++|.+.++
T Consensus 19 PL~~tiiKP~~Glsp~~~a~~~~e~a~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~av~~a~~eTG~~~~ya~NiT~~~~ 98 (328)
T d1bwva1 19 PLLGCTTKPKLGLSGKNYGRVVYEALKGGLDFVKDDENINSQPFMRWRERYLFTMEAVNKASAATGEVKGHYLNVTAATM 98 (328)
T ss_dssp CEEECBCSSSSCCCHHHHHHHHHHHHHHTCSEEECCTTCSSBTTBCHHHHHHHHHHHHHHHHHHHTSCCEEEEECCCSSH
T ss_pred CeEEeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeCCccccCCCccchHHHHHHHHHHHHHHHHHhCCeeEEEEeccCCCH
Confidence 45444 76789999998876 4668899875 444444433322222211111 0112 2347899999999
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCC-------Cc
Q 017176 77 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD-------HD 149 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~-------~~ 149 (376)
+.+.+.++.+++.|...+-+|+- +|- ..+.. +....+..++++-. -|.|+.- .-
T Consensus 99 ~~m~~ra~~~~~~g~~~lm~~~~-----------~G~------~~l~~-la~~~~~~~l~iH~-H~Ag~g~~t~~~~~Gi 159 (328)
T d1bwva1 99 EEMYARANFAKELGSVIIMIDLV-----------IGY------TAIQT-MAKWARDNDMILHL-HRAGNSTYSRQKNHGM 159 (328)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEGG-----------GCH------HHHHH-HHHHHHHTTCEEEE-ECTTTHHHHSCTTSEE
T ss_pred HHHHHHHHHHHhcCCeEEEEccc-----------cch------HHHHH-HHHHhhhcCeeecc-cccccccccCCCCCCc
Confidence 99999999999999888877631 121 11112 22212223455444 4555311 01
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhh------------------C-CCCeE
Q 017176 150 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD------------------F-PDLTF 210 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~------------------~-~~ipV 210 (376)
++.- +.+++.-+|+|.+++.+-.....+ .. .........+... . +-+||
T Consensus 160 s~~v----l~KL~RLaGaD~ih~~t~~Gk~~~---~~-----~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~k~~~Pv 227 (328)
T d1bwva1 160 NFRV----ICKWMRMAGVDHIHAGTVVGKLEG---DP-----IITRGFYKTLLLPKLERNLQEGLFFDMEWASLRKVMPV 227 (328)
T ss_dssp CHHH----HHHHHHHHTCSEEECCCSSSSSCC---CH-----HHHHHHHHHHHCSEECCBTTTTBCSCEECTTCCCCEEE
T ss_pred CHHH----HHHHHHHcCCCccccCccccCcCC---CH-----HHHHHHHHHHhhcccccchhcCcccccccccCCCccee
Confidence 2221 234444589999876432111111 00 0001111111110 0 12444
Q ss_pred EEecCCCCHHHHHHHHH-cCcC-eeEEchHHhhCCchh
Q 017176 211 TLNGGINTVDEVNAALR-KGAH-HVMVGRAAYQNPWYT 246 (376)
Q Consensus 211 i~nGgI~s~~da~~~l~-~Gad-~VmiGRa~l~~P~lf 246 (376)
.+||+ ++..+.++++ .|-| .+++|-|+++.||-.
T Consensus 228 -~SgG~-~~g~vp~~~~~~G~Dvil~~GGGi~gHP~G~ 263 (328)
T d1bwva1 228 -ASGGI-HAGQMHQLIHYLGEDVVLQFGGGTIGHPDGI 263 (328)
T ss_dssp -EESSC-CTTSHHHHHHHHCSSCEEECSHHHHTCTTCH
T ss_pred -cCCCC-cHhHHHHHHHHhCCeEEEecCcccccCCCcc
Confidence 45666 6677777777 7878 456899999999974
|
| >d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Escherichia coli [TaxId: 562]
Probab=85.34 E-value=1.3 Score=38.03 Aligned_cols=68 Identities=6% Similarity=-0.016 Sum_probs=52.9
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017176 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
..+.|+++|.|-.-....+|. ++.+..+++. +++||+---=|.++-++.++...|||+|.+=-++|.
T Consensus 76 ~~~~gA~aiSVLTe~~~F~Gs------------~~~l~~v~~~-~~~PiLrKDFIid~~QI~ear~~GADavLLI~~~L~ 142 (254)
T d1piia2 76 IYKHYASAISVLTDEKYFQGS------------FNFLPIVSQI-APQPILCKDFIIDPYQIYLARYYQADACLLMLSVLD 142 (254)
T ss_dssp HHTTTCSEEEEECCSTTTCCC------------TTHHHHHHHH-CCSCEEEESCCCSHHHHHHHHHTTCSEEEEETTTCC
T ss_pred HHHhccCceEEecccccCCCC------------HHHHHHHHhc-cccccchhcccCcHHHHHHHHhhccchhhhhHhhhc
Confidence 346899999998765544442 4556666655 489999999999999999999999999988666664
Q ss_pred C
Q 017176 242 N 242 (376)
Q Consensus 242 ~ 242 (376)
+
T Consensus 143 ~ 143 (254)
T d1piia2 143 D 143 (254)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Citrobacter amalonaticus [TaxId: 35703]
Probab=84.83 E-value=4.5 Score=34.37 Aligned_cols=160 Identities=12% Similarity=0.096 Sum_probs=82.6
Q ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe
Q 017176 62 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 141 (376)
Q Consensus 62 ~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 141 (376)
+..-|+.-|..++..+.-..+. . .+.+.+ .|.+-..-+ .+-|.-|..+...++.+.+-|++++...+.-+.+.+
T Consensus 4 ~~~VP~~g~~g~~~~~~~e~mI---~-~~a~~~-~~~~~~~lk-~kvG~~g~~~~e~~~~~~~rI~~~r~~~G~~~~i~i 77 (251)
T d1kkoa1 4 PEAIPLFGQSGDDRYIAVDKMI---L-KGVDVL-PHALINNVE-EKLGFKGEKLREYVRWLSDRILSLRSSPRYHPTLHI 77 (251)
T ss_dssp CCCCCEECCCTTCTTHHHHHHH---H-TTCSEE-EETTCCCCC-CCCCTTSHHHHHHHHHHHHHHHHHCSSTTCCCEEEE
T ss_pred CCCcccccccCCCcccchHHHH---H-hhhHHH-HHHHHHHHH-HHhCCCCCCcHHHHHHHHHHHHHHHhCcCCCcceee
Confidence 3456777777777654322221 1 244544 232222212 112333666665666777778888777765444443
Q ss_pred cCCC----CCCccHHHHHHHHHHHhhcCCccE-EEEccCccccCCCCCCCCCCCCcccHHHHHHHHhh----CCCCeEEE
Q 017176 142 RIGV----DDHDSYNQLCDFIYKVSSLSPTRH-FIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD----FPDLTFTL 212 (376)
Q Consensus 142 R~g~----~~~~~~~~~~~~i~~~~e~~Gvd~-I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~----~~~ipVi~ 212 (376)
-..- .-.-+.++.++++.++.+ .+.++ |-+-- +...+. .+-+++.++++.+. ..++||++
T Consensus 78 D~~~~~~~~~~~~~~~ai~~l~~L~~-~~~~~~l~IEq--P~~~~~--------~~~d~~gl~~l~~~l~~~g~~vpI~~ 146 (251)
T d1kkoa1 78 DVYGTIGLIFDMDPVRCAEYIASLEK-EAQGLPLYIEG--PVDAGN--------KPDQIRMLTAITKELTRLGSGVKIVA 146 (251)
T ss_dssp ECTTHHHHHTTTCHHHHHHHHHHTGG-GGTTSCEEEEC--CCCCSS--------HHHHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred ccccccccccCCCHHHHHHHHHHHHH-hcCCCceeecC--Cccccc--------chHHHHHHHHHHHHHhccCCCceEec
Confidence 3210 001134566666665543 33332 12210 000000 01124444444332 24799999
Q ss_pred ecCCCCHHHHHHHHH-cCcCeeEEchH
Q 017176 213 NGGINTVDEVNAALR-KGAHHVMVGRA 238 (376)
Q Consensus 213 nGgI~s~~da~~~l~-~Gad~VmiGRa 238 (376)
.=.+.|.+++.++++ ..||.|++=-.
T Consensus 147 DE~~~t~~d~~~~i~~~a~d~v~iK~~ 173 (251)
T d1kkoa1 147 DEWCNTYQDIVDFTDAGSCHMVQIKTP 173 (251)
T ss_dssp CTTCCSHHHHHHHHHTTCCSEEEECGG
T ss_pred cceeCCHHHHHHHHHhCCccceecccc
Confidence 999999999999998 56899988433
|
| >d2d69a1 c.1.14.1 (A:134-424) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=84.63 E-value=7.9 Score=33.54 Aligned_cols=195 Identities=13% Similarity=0.168 Sum_probs=106.4
Q ss_pred cCCCCChHHHHHHH--HHhCCCcEEE-ecceeecccccccchhhhhhc-------cCCCCCCEEEEecCCCHHHHHHHHH
Q 017176 15 PMMDWTDNHYRTLA--RLISKHAWLY-TEMLAAETIIYQQGNLDRFLA-------FSPEQHPIVLQIGGSNLDNLAKATE 84 (376)
Q Consensus 15 PM~~~td~~~r~~~--~~~Gg~gl~~-te~v~~~~~~~~~~~~~~~~~-------~~~~~~p~~vQL~g~~~~~~~~aa~ 84 (376)
|-.|.|..++..++ ...||+++|= -|.+.......-.+......+ ..-...-..++|.+ +++++.+-++
T Consensus 28 P~~Gls~~~~a~~~~~~~~GGvD~IKDDe~l~~~~~~p~~eRv~~~~~a~~~a~~~tG~~~~Ya~Nit~-~~~~m~~ra~ 106 (291)
T d2d69a1 28 PKMGWSVEEYAEIAYELWSGGIDLLKDDENFTSFPFNRFEERVRKLYRVRDRVEAETGETKEYLINITG-PVNIMEKRAE 106 (291)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTCSEEECCTTCSCBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEECBCCS-SHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHccCCceecCCccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeeEEEEeccC-CHHHHHHHHH
Confidence 66789999998876 4668899875 334433333222222211111 01122346788875 6999999999
Q ss_pred HHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhc---ccCccEEEEecCCCCC-------CccHHHH
Q 017176 85 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA---NTNVPVSVKCRIGVDD-------HDSYNQL 154 (376)
Q Consensus 85 ~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~---~~~~pv~vKiR~g~~~-------~~~~~~~ 154 (376)
.++++|.+++-+|. .. +|- ..++.+++ ..++|+.. -|.++.- .-+..
T Consensus 107 ~~~~~G~~~vmi~~-----~~-----~G~----------~al~~l~~~~~~~~l~ih~-Hra~~g~~~r~~~~Gis~~-- 163 (291)
T d2d69a1 107 MVANEGGQYVMIDI-----VV-----AGW----------SALQYMREVTEDLGLAIHA-HRAMHAAFTRNPRHGITML-- 163 (291)
T ss_dssp HHHHHTCCEEEEEH-----HH-----HCH----------HHHHHHHHHHHHHTCEEEE-ECTTTHHHHSCTTSEECHH--
T ss_pred HHHHcCCCEEEecc-----cc-----cch----------HHHHHHHHhhccccceeee-cccccceeccCCCCcccHH--
Confidence 99999999998873 11 131 12333332 23445433 3444311 11221
Q ss_pred HHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhh-C----CCCeEEEecCCCCHHHHHHHHH-c
Q 017176 155 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD-F----PDLTFTLNGGINTVDEVNAALR-K 228 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~-~----~~ipVi~nGgI~s~~da~~~l~-~ 228 (376)
.+.++..-+|+|.+++.+-. |....+ +-....+.....+ . +-+|+ .+||+ ++..+.++++ .
T Consensus 164 --v~~kL~RLaGaD~ih~~~~~----Gk~~~~-----~~e~~~~~~~~~~~~~~~k~~~Pv-~sGG~-~~~~vp~~~~~~ 230 (291)
T d2d69a1 164 --ALAKAARMIGVDQIHTGTAV----GKMAGN-----YEEIKRINDFLLSKWEHIRPVFPV-ASGGL-HPGLMPELIRLF 230 (291)
T ss_dssp --HHHHHHHHHTCSEEECCCCC----SSSCCC-----HHHHHHHHHHHHSCCTTCCCCEEE-EESSC-CGGGHHHHHHHH
T ss_pred --HHHHHHHHcCCCeeecCCCC----CCCCCC-----HHHHHHHHHHhccccccCCCceec-ccccc-chhhhHHHHHHc
Confidence 23455556899998764321 211100 0001111222222 1 12454 45666 5788888888 7
Q ss_pred CcCe-eEEchHHhhCCchh
Q 017176 229 GAHH-VMVGRAAYQNPWYT 246 (376)
Q Consensus 229 Gad~-VmiGRa~l~~P~lf 246 (376)
|-|. +++|-|+++.|+=.
T Consensus 231 G~D~il~~GGgi~gHP~G~ 249 (291)
T d2d69a1 231 GKDLVIQAGGGVMGHPDGP 249 (291)
T ss_dssp CSCCEEECHHHHHTCTTCH
T ss_pred CCceEEEcCccccCCCCch
Confidence 8885 56889999999953
|
| >d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermotoga maritima [TaxId: 2336]
Probab=84.47 E-value=1.1 Score=38.39 Aligned_cols=72 Identities=11% Similarity=-0.004 Sum_probs=54.6
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017176 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++..+ .|+++|.|..-....+|. ++.+.++++. +++||+---=|.++-++.++...|||+|.+=-+
T Consensus 67 a~~ye-~GA~aiSVLTd~~~F~Gs------------~~~l~~vr~~-~~~PiLrKDFIid~~QI~ea~~~GADaiLLI~~ 132 (251)
T d1i4na_ 67 IRMYD-ELADAISILTEKHYFKGD------------PAFVRAARNL-TCRPILAKDFYIDTVQVKLASSVGADAILIIAR 132 (251)
T ss_dssp HHHHH-HHCSEEEEECCCSSSCCC------------THHHHHHHTT-CCSCEEEECCCCSTHHHHHHHHTTCSEEEEEGG
T ss_pred HHHHh-cCCcceEEecccCCCCCC------------HHHHHHHhhc-ccCchhhhhhhhCHHHHHHHHhhccceEEeecc
Confidence 34554 599999998755444442 5667777654 599999999999999999999999999988666
Q ss_pred HhhCCc
Q 017176 239 AYQNPW 244 (376)
Q Consensus 239 ~l~~P~ 244 (376)
+|.+..
T Consensus 133 ~L~~~~ 138 (251)
T d1i4na_ 133 ILTAEQ 138 (251)
T ss_dssp GSCHHH
T ss_pred cccHHH
Confidence 664433
|
| >d3bofa1 c.1.21.2 (A:301-560) Cobalamin-dependent methionine synthase MetH, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Methyltetrahydrofolate-utiluzing methyltransferases domain: Cobalamin-dependent methionine synthase MetH, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=84.44 E-value=0.76 Score=39.83 Aligned_cols=53 Identities=21% Similarity=0.352 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEE
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 140 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vK 140 (376)
+.+...+-|+...+.|+|.||||++-|. ....+.+.++++.++..+++|+++-
T Consensus 38 d~d~~~~~A~~qv~~GA~iLDIn~~~~~-------------~~e~~~m~~li~~l~~~~d~PlsID 90 (260)
T d3bofa1 38 NEEIVIKEAKTQVEKGAEVLDVNFGIES-------------QIDVRYVEKIVQTLPYVSNVPLSLD 90 (260)
T ss_dssp CSHHHHHHHHHHHHTTCSEEEEECSSGG-------------GSCHHHHHHHHHHHHHHTCSCEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEeecCCch-------------hhhHHHHHHHHHHHHhcCCCCcccc
Confidence 4456666677777889999999986432 1457888999999998899999884
|
| >d1n55a_ c.1.1.1 (A:) Triosephosphate isomerase {Leishmania mexicana [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Leishmania mexicana [TaxId: 5665]
Probab=84.11 E-value=0.28 Score=42.45 Aligned_cols=42 Identities=17% Similarity=0.274 Sum_probs=35.0
Q ss_pred CCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHhhCCchhhHhhh
Q 017176 207 DLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHVD 251 (376)
Q Consensus 207 ~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~lf~~~~~ 251 (376)
++||+.-|.| +++.+.+.+. .++||+.||++.|. |. |...++
T Consensus 204 ~i~ilYGGSV-~~~N~~~i~~~~~vdG~LVG~ASl~-~~-F~~Ii~ 246 (249)
T d1n55a_ 204 KLRILYGGSV-NAANAATLYAKPDINGFLVGGASLK-PE-FRDIID 246 (249)
T ss_dssp HCEEEEESSC-CTTTHHHHHTSTTCCEEEESGGGGS-TT-HHHHHH
T ss_pred cccEEEcCCC-CHhHHHHHhcCCCCCeEEeehhhcC-HH-HHHHHH
Confidence 4899998888 7788888888 89999999999994 88 665443
|
| >d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein DctD, receiver domain species: Sinorhizobium meliloti [TaxId: 382]
Probab=83.55 E-value=1.4 Score=33.93 Aligned_cols=45 Identities=22% Similarity=0.361 Sum_probs=38.8
Q ss_pred HHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 195 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 195 ~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
++.+.++++..+++|||...+-.+.+++.++++.||+.... .|+-
T Consensus 60 ~el~~~lr~~~~~~pvI~lT~~~~~~~~~~a~~~Ga~dyl~------KP~~ 104 (140)
T d1qkka_ 60 LALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIA------KPFA 104 (140)
T ss_dssp HHHHHHHHHHCTTSCEEEEECGGGHHHHHHHHHTTCCEEEE------SSCC
T ss_pred HHHHHHHHHhCCCCcEEEEECCCCHHHHHHHHHcCCCEeec------CCCC
Confidence 67888888878899999999999999999999999997665 7864
|
| >d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=83.24 E-value=6.9 Score=33.80 Aligned_cols=137 Identities=15% Similarity=0.158 Sum_probs=71.8
Q ss_pred CCEEEEecC--CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcc---c------
Q 017176 65 HPIVLQIGG--SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN---T------ 133 (376)
Q Consensus 65 ~p~~vQL~g--~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~---~------ 133 (376)
.++++=|+- .+++.+ +.+.++|.|.+-|||+.-. .+...++++.+|+. .
T Consensus 33 TKIIaTiGPas~~~e~l----~~Li~aGvnv~RiN~SHg~----------------~e~h~~~i~~iR~~~~~~~~~~il 92 (282)
T d2g50a2 33 TGIICTIGPASRSVETL----KEMIKSGMNVARMNFSHGT----------------HEYHAETIKNVRTATESFASDPIL 92 (282)
T ss_dssp SEEEEECSTTTCSHHHH----HHHHHHTCCEEEEETTSSC----------------HHHHHHHHHHHHHHHHTTTTCTTT
T ss_pred CcEEEEeCCCCCCHHHH----HHHHHcCCCEEEEeCCCCC----------------HHHHHHHHHHHHHHHHHhCCCcee
Confidence 457777743 234433 3455679999999985422 23333444444432 2
Q ss_pred CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEc-cCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEE
Q 017176 134 NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH-SRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFT 211 (376)
Q Consensus 134 ~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh-~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi 211 (376)
-.|+.+..-....... ..+..+ +. ...+.|+|+|.++ -|+.. +...++++.++. .+++||
T Consensus 93 ~~~~~I~~d~~~~~l~-~~di~d-i~-~a~~~~vD~ialSFVrs~~---------------DI~~~r~~l~~~g~~~~Ii 154 (282)
T d2g50a2 93 YRPVAVALDTKGPAVS-EKDIQD-LK-FGVEQDVDMVFASFIRKAA---------------DVHEVRKILGEKGKNIKII 154 (282)
T ss_dssp CCCCEEEEECCCCSSC-HHHHHH-HH-HHHHTTCSEEEETTCCSHH---------------HHHHHHHHHTTTTTTSEEE
T ss_pred cccccccccccccccc-chHHHH-HH-HhhhccccceeecccCCHH---------------HHHHHHHHHHHcCCCceEE
Confidence 2355554433322221 112111 12 2346899999987 33321 133455555443 356666
Q ss_pred EecCCCCHHHHH---HHHHcCcCeeEEchHHhhC
Q 017176 212 LNGGINTVDEVN---AALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 212 ~nGgI~s~~da~---~~l~~Gad~VmiGRa~l~~ 242 (376)
+ -|.+.+.+. +.++ -+|||||+||=|+.
T Consensus 155 a--KIE~~~al~NldeIi~-~sDgIMIaRGDLg~ 185 (282)
T d2g50a2 155 S--KIENHEGVRRFDEILE-ASDGIMVARGDLGI 185 (282)
T ss_dssp E--EECSHHHHHTHHHHHH-HSSEEEEEHHHHHH
T ss_pred E--eecchhhhhcchhhcc-ccceeeeecccccc
Confidence 5 344444333 3333 47999999998854
|
| >d1l6wa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Decameric fructose-6-phosphate aldolase/transaldolase species: Escherichia coli [TaxId: 562]
Probab=82.90 E-value=2.9 Score=34.92 Aligned_cols=142 Identities=15% Similarity=0.117 Sum_probs=81.2
Q ss_pred hhccCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCC-EEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCc
Q 017176 57 FLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYD-EINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135 (376)
Q Consensus 57 ~~~~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d-~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~ 135 (376)
+.+....+.++.+|+++.+.+.+.+-|+.+.+.+-. .|-| |. +.. | .+.++.+.+ -++
T Consensus 46 i~~~~~~~~~is~ev~~~~~~~mi~~A~~l~~~~~nv~IKI----P~-----t~~-g----------~~ai~~L~~-~Gi 104 (220)
T d1l6wa_ 46 LHEAMGGQGRLFAQVMATTAEGMVNDALKLRSIIADIVVKV----PV-----TAE-G----------LAAIKMLKA-EGI 104 (220)
T ss_dssp HHHHTTTCSEEEEECCCSSHHHHHHHHHHHHHHSTTCEEEE----EC-----SHH-H----------HHHHHHHHH-HTC
T ss_pred HHHHhCcCCeEEeEEeeehhhhhHHHHHHHHHhccccEEEe----ec-----ccc-c----------cchhhhhhh-ccc
Confidence 334444577899999999999988877777664421 2222 11 111 3 223333322 255
Q ss_pred cEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEc-cCccccCCCCCCCCCCCCcccHHHHHH---HHhhC-CCCeE
Q 017176 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH-SRKALLNGISPAENRTIPPLKYEYYYA---LLRDF-PDLTF 210 (376)
Q Consensus 136 pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh-~r~~~~~g~~~~~~~~~~~~~~~~v~~---~~~~~-~~ipV 210 (376)
++.+-.- -+..+.. ++.++|++++..- ||-.. .|..+ ++.+.+ +.+.. .+. -
T Consensus 105 ~vn~Tav------fs~~Qa~-----~Aa~aga~yvspy~gR~~d-~g~dg----------~~~i~~~~~~~~~~~~~t-k 161 (220)
T d1l6wa_ 105 PTLGTAV------YGAAQGL-----LSALAGAEYVAPYVNRIDA-QGGSG----------IQTVTDLHQLLKMHAPQA-K 161 (220)
T ss_dssp CEEEEEE------CSHHHHH-----HHHHHTCSEEEEBHHHHHH-TTSCH----------HHHHHHHHHHHHHHCTTC-E
T ss_pred chhhhhc------ccHHHHH-----HhhhcCCcEEeeeeeehhh-cccCC----------hHHHHHHHHHHHhcCCCc-e
Confidence 5544211 1223322 1235899998876 44321 22111 344433 33322 234 4
Q ss_pred EEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017176 211 TLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 211 i~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
|..+.+++.+++.++...|||.|-+.-.++..
T Consensus 162 Il~AS~R~~~~v~~~~~~G~d~iTip~~v~~~ 193 (220)
T d1l6wa_ 162 VLAASFKTPRQALDCLLAGCESITLPLDVAQQ 193 (220)
T ss_dssp EEEBCCSSHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred EeehhcCCHHHHHHHHHcCCCEEEcCHHHHHH
Confidence 56699999999999999999999997665543
|
| >d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Staphylococcus aureus [TaxId: 1280]
Probab=82.41 E-value=5.1 Score=34.31 Aligned_cols=83 Identities=12% Similarity=0.059 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHH
Q 017176 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 154 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~ 154 (376)
+++...+-++.+.+.|+|.|||..-+-.+ |.=--+.....+.+..+++.+++ .+++++|-++- .++
T Consensus 24 ~~~~a~~~~~~m~~~GAdiIDIGaeSTrP-----ga~~is~~eE~~Rl~pvi~~l~~-~~~~iSIDT~~--------~eV 89 (264)
T d1ad1a_ 24 NVESAVTRVKAMMDEGADIIDVGGVSTRP-----GHEMITVEEELNRVLPVVEAIVG-FDVKISVDTFR--------SEV 89 (264)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEESCCCST-----TCCCCCHHHHHHHHHHHHHHHTT-SSSEEEEECSC--------HHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCccCCC-----CCCcCCHHHHHHhhhhHhhhhcc-cCcccchhhhh--------HHH
Confidence 56777777777778899999997643222 11011222344567777777764 46777774332 133
Q ss_pred HHHHHHHhhcCCccEEE-EccC
Q 017176 155 CDFIYKVSSLSPTRHFI-IHSR 175 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~-vh~r 175 (376)
++ .+-++|++.|. |+++
T Consensus 90 a~----~al~~Ga~iINDVs~g 107 (264)
T d1ad1a_ 90 AE----ACLKLGVDIINDQWAG 107 (264)
T ss_dssp HH----HHHHTTCCEEEETTTT
T ss_pred HH----HHHhcCCcEeeccccc
Confidence 32 22358999887 5554
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=82.13 E-value=2.2 Score=36.36 Aligned_cols=64 Identities=16% Similarity=0.193 Sum_probs=50.8
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHh
Q 017176 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l 240 (376)
+.|+++|.|=.-....+| .++.+.++++.+ ++||+---=|.++-++.++...|||+|.+==++|
T Consensus 73 ~~gA~aiSVLTd~~~F~G------------s~~dl~~v~~~~-~~PiLrKDFIid~~QI~ea~~~GADaiLLI~~~L 136 (247)
T d1a53a_ 73 ERYAVGLSILTEEKYFNG------------SYETLRKIASSV-SIPILMKDFIVKESQIDDAYNLGADTVLLIVKIL 136 (247)
T ss_dssp TTTCSEEEEECCCTTTCC------------CHHHHHHHHHHC-CSCEEEESCCCSHHHHHHHHHHTCSEEEEEGGGS
T ss_pred HhCCCeEEEecCcccccc------------chHHHHHHHhcc-ccceeecccccChHHHHHHHHhhcchhhhhhhhc
Confidence 589999988654333344 267777777764 9999999999999999999999999998866665
|
| >d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Pyridoxine 5'-phosphate synthase family: Pyridoxine 5'-phosphate synthase domain: Pyridoxine 5'-phosphate synthase species: Escherichia coli [TaxId: 562]
Probab=81.91 E-value=1.7 Score=37.00 Aligned_cols=117 Identities=15% Similarity=0.122 Sum_probs=67.2
Q ss_pred CCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCC
Q 017176 108 HGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187 (376)
Q Consensus 108 ~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~ 187 (376)
+++ |=.+..+.+++..+++.+++. ++.|++-+-+ +.++ ++ .+.+.|+|.|.+|.+.-... .....
T Consensus 102 Teg-Gld~~~~~~~L~~~i~~l~~~-girvSLFiDp------d~~~-i~----~a~~lGad~IElhTG~Ya~a-~~~~~- 166 (242)
T d1m5wa_ 102 TEG-GLDVAGQRDKMRDACKRLADA-GIQVSLFIDA------DEEQ-IK----AAAEVGAPFIEIHTGCYADA-KTDAE- 166 (242)
T ss_dssp CCS-CCCSGGGHHHHHHHHHHHHHT-TCEEEEEECS------CHHH-HH----HHHHTTCSEEEEECHHHHHC-CSHHH-
T ss_pred cCC-ceeehhhHHHHHHHHHHHHhc-CCeEEEEecc------chhh-HH----HHhhcCcceeeeeccccccc-ccchh-
Confidence 444 766778889999999999765 6677665433 1222 11 23478999999997752100 00000
Q ss_pred CCCCcccHHHH---HHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHhhCCc
Q 017176 188 RTIPPLKYEYY---YALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 188 ~~~~~~~~~~v---~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~ 244 (376)
. ..-++.+ .+.+.+. ++-|=+-=|+ +.+.+..+.+ .+.+=|-||-+++.+--
T Consensus 167 -~--~~el~~i~~aa~~A~~l-GL~VnAGHgL-n~~Nl~~i~~ip~i~EvsIGHaiI~eal 222 (242)
T d1m5wa_ 167 -Q--AQELARIAKAATFAASL-GLKVNAGHGL-TYHNVKAIAAIPEMHELNIGHAIIGRAV 222 (242)
T ss_dssp -H--HHHHHHHHHHHHHHHHT-TCEEEEESSC-CTTTHHHHHTCTTEEEEEECHHHHHHHH
T ss_pred -h--HHHHHHHHHHHHHHHhc-CCcccCCCCc-CccchHHHhcCCCCeEEeccHHHHHHHH
Confidence 0 0001111 2222332 5655554454 5555655555 67899999999887654
|
| >d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein FixJ, receiver domain species: Rhizobium meliloti [TaxId: 382]
Probab=81.71 E-value=3.3 Score=30.81 Aligned_cols=45 Identities=18% Similarity=0.160 Sum_probs=38.0
Q ss_pred HHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 195 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 195 ~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
++.+.++++..+++|||...+-.+.+.+.++++.||+... ..|+-
T Consensus 63 ~e~~~~lr~~~~~~~iI~lt~~~~~~~~~~a~~~Ga~~yl------~KP~~ 107 (123)
T d1dbwa_ 63 VELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFI------EKPFE 107 (123)
T ss_dssp HHHHHHHHHTTCCCCEEEEECTTCHHHHHHHHHTTCSEEE------ESSCC
T ss_pred hHHHHHHHhcCCCCeEEEEEeeCCHHHHHHHHHCCCCEEE------ECCCC
Confidence 7788888777789999999999999999999999998754 47753
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=81.23 E-value=3.8 Score=36.37 Aligned_cols=91 Identities=10% Similarity=0.112 Sum_probs=57.7
Q ss_pred CCCEEEEec-------CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCcc
Q 017176 64 QHPIVLQIG-------GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 136 (376)
Q Consensus 64 ~~p~~vQL~-------g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~p 136 (376)
+.|+++-|. |.+.++..+.++.++++|.|.+++..|........ ..+....++.+.+|+.+++|
T Consensus 208 ~~~~~vr~~~~~~~~~g~~~~~~~~~~~~l~~~g~d~~~~s~g~~~~~~~~---------~~~~~~~~~~~~ik~~~~~p 278 (337)
T d1z41a1 208 DGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADIN---------VFPGYQVSFAEKIREQADMA 278 (337)
T ss_dssp CSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCC---------CCTTTTHHHHHHHHHHHCCE
T ss_pred cccceEEecccccccCccchhhhHHHHHHHHHcCCcccccccccccccccc---------cCCcccHHHHHHHHHhcCce
Confidence 557777775 45688999999999999999999998865432111 11222345667778888889
Q ss_pred EEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEE
Q 017176 137 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII 172 (376)
Q Consensus 137 v~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~v 172 (376)
|.+= .++.+ .+.. .+++++..+|.|.+
T Consensus 279 vi~~--G~i~~---~~~a----e~~l~~g~~D~V~~ 305 (337)
T d1z41a1 279 TGAV--GMITD---GSMA----EEILQNGRADLIFI 305 (337)
T ss_dssp EEEC--SSCCS---HHHH----HHHHHTTSCSEEEE
T ss_pred EEEe--CCcCC---HHHH----HHHHHCCCcceehh
Confidence 8762 22333 2222 23455555887654
|
| >d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Nitrate/nitrite response regulator (NarL), receiver domain species: Escherichia coli [TaxId: 562]
Probab=81.19 E-value=7.7 Score=29.12 Aligned_cols=41 Identities=20% Similarity=0.157 Sum_probs=35.2
Q ss_pred HHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEE
Q 017176 195 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 235 (376)
Q Consensus 195 ~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vmi 235 (376)
++.+.++++..+++||+.--+-.+.+++.++++.||++...
T Consensus 64 ~el~~~ir~~~~~~~vivlt~~~~~~~~~~a~~~Ga~~yl~ 104 (138)
T d1a04a2 64 LETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLL 104 (138)
T ss_dssp HHHHHHHHHSCCCSEEEEEECCCCHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHhhCCCCCEEEEEEECCHHHHHHHHHcCCCEEEE
Confidence 78888888878899999888888999999999999987543
|
| >d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Haemophilus influenzae [TaxId: 727]
Probab=81.11 E-value=1 Score=39.18 Aligned_cols=87 Identities=11% Similarity=0.006 Sum_probs=48.2
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHH--
Q 017176 150 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAAL-- 226 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l-- 226 (376)
+++.+.+.+..++++.|++.|.+-|-+......+..+ +.+.+...++.. .++||++.=+=.+.+++.+..
T Consensus 22 D~~~l~~~i~~li~~~Gv~gi~v~GttGE~~~Ls~~E-------r~~l~~~~~~~~~~~~~vi~gv~~~s~~~~iela~~ 94 (293)
T d1f74a_ 22 NEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEE-------KKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKY 94 (293)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHH-------HHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCEEEECccCcchhhCCHHH-------HhhhhheeeccccCccccccccccccHHHHHHHHHH
Confidence 4555555555555666999999877654322222110 122333222222 368988544444555554433
Q ss_pred --HcCcCeeEEchHHhhCC
Q 017176 227 --RKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 227 --~~Gad~VmiGRa~l~~P 243 (376)
+.|+|+||+....+..|
T Consensus 95 a~~~Gad~i~~~pP~~~~~ 113 (293)
T d1f74a_ 95 ATELGYDCLSAVTPFYYKF 113 (293)
T ss_dssp HHHHTCSEEECCCCCSSCC
T ss_pred HHHcCCCEeeccCcccccc
Confidence 27999999987776544
|
| >d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.06 E-value=1.4 Score=38.21 Aligned_cols=135 Identities=15% Similarity=0.127 Sum_probs=72.2
Q ss_pred CCEEEEecCC--CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcc----cCccEE
Q 017176 65 HPIVLQIGGS--NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN----TNVPVS 138 (376)
Q Consensus 65 ~p~~vQL~g~--~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~----~~~pv~ 138 (376)
.++++=|+-+ +++ ..+.+.++|.|.+-||++.-. .+...++++.+|+. .+.|+.
T Consensus 21 TKIIaTiGPas~~~e----~l~~li~aG~dv~RlN~SHg~----------------~~~h~~~i~~iR~~~e~~~G~~v~ 80 (265)
T d1a3xa2 21 TSIIGTIGPKTNNPE----TLVALRKAGLNIVRMNFSHGS----------------YEYHKSVIDNARKSEELYPGRPLA 80 (265)
T ss_dssp SEEEEECCTTTCSHH----HHHHHHHHTEEEEEEETTSCC----------------HHHHHHHHHHHHHHHHHCCCSCCB
T ss_pred ceEEEeeCCCCCCHH----HHHHHHHcCCCEEEEECCCCC----------------HHHHHHHHHHHHHHhhhccCCcee
Confidence 3577777532 344 344566679999999985332 23334444444432 355654
Q ss_pred EEecCCCCCCc--cHHHHHHHHHHHhhcCCccEEEEc-cCccccCCCCCCCCCCCCcccHHHHHHHHhh-CCCCeEEEec
Q 017176 139 VKCRIGVDDHD--SYNQLCDFIYKVSSLSPTRHFIIH-SRKALLNGISPAENRTIPPLKYEYYYALLRD-FPDLTFTLNG 214 (376)
Q Consensus 139 vKiR~g~~~~~--~~~~~~~~i~~~~e~~Gvd~I~vh-~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~-~~~ipVi~nG 214 (376)
+-..+...... +.+++ + ...+.|+|+|.++ -|+.. +...++++.++ ..+++||+
T Consensus 81 i~~dl~~p~ltekD~~di-~----~a~~~~vD~ialSFVrs~~---------------Di~~~r~~l~~~~~~~~Iia-- 138 (265)
T d1a3xa2 81 IALDTKGPALSEKDKEDL-R----FGVKNGVHMVFASFIRTAN---------------DVLTIREVLGEQGKDVKIIV-- 138 (265)
T ss_dssp CEEECCCCSSCHHHHHHH-H----HHHHTTCCEECCTTCCSHH---------------HHHHHHHHHCGGGTTSCCEE--
T ss_pred eeccccchhcccchHHHH-H----HhhhcccceEeeccCCCHH---------------HHHHHHHHHHHhcCCCeEEe--
Confidence 44333222222 12221 2 2236899999986 33321 13444555433 23566665
Q ss_pred CCCCHHHHH---HHHHcCcCeeEEchHHhhC
Q 017176 215 GINTVDEVN---AALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 215 gI~s~~da~---~~l~~Gad~VmiGRa~l~~ 242 (376)
-|.+.+.++ +.++ -+|||||+||=|+-
T Consensus 139 KIE~~~al~NldeIi~-~sDgimIaRGDLgv 168 (265)
T d1a3xa2 139 KIENQQGVNNFDEILK-VTDGVMVARGDLGI 168 (265)
T ss_dssp EECSHHHHTTHHHHHH-HCSEEEEEHHHHHH
T ss_pred eccchHHHhChHHHHh-hcceeEEEccchhh
Confidence 455554433 3333 48999999998754
|
| >d1piia1 c.1.2.4 (A:255-452) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Escherichia coli [TaxId: 562]
Probab=80.63 E-value=13 Score=30.03 Aligned_cols=173 Identities=10% Similarity=0.160 Sum_probs=91.5
Q ss_pred CCCChHHHHHHHHHhCCCcEEEecceeeccccc--ccchhhhhhccCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEE
Q 017176 17 MDWTDNHYRTLARLISKHAWLYTEMLAAETIIY--QQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEI 94 (376)
Q Consensus 17 ~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~--~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~I 94 (376)
+|+|+..-..+|..+| ++++ +|+....--+ .......+....+ -.+++| +...+++.. .+.++..++|.|
T Consensus 6 CGIt~~~d~~~~~~~g-aD~i--Gfif~~~SpR~Vs~~~a~~i~~~~~-~~~V~V-fv~~~~~~i---~~~~~~~~~d~i 77 (198)
T d1piia1 6 CGLTRGQDAKAAYDAG-AIYG--GLIFVATSPRCVNVEQAQEVMAAAP-LQYVGV-FRNHDIADV---VDKAKVLSLAAV 77 (198)
T ss_dssp CCCCSHHHHHHHHHHT-CSEE--EEECCTTCTTBCCHHHHHHHHHHCC-CEEEEE-ESSCCHHHH---HHHHHHHTCSEE
T ss_pred cCCCcHHHHHHHHhCC-CCEE--EEEccCCCCCCcCHHHHHHhhhhcc-ccccee-eeccchhhH---HHhhhcccccce
Confidence 5888888888888886 6654 3333221111 1112223333222 122222 234455543 455667789999
Q ss_pred EecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEE
Q 017176 95 NLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII 172 (376)
Q Consensus 95 eiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~v 172 (376)
.||..- .++.+.. +++.. .+.+...++.. +..... ....+|.+.+
T Consensus 78 QlHG~e-----------------~~~~~~~----l~~~~~~~~~~~~~~~~~--~~~~~~----------~~~~~d~~ll 124 (198)
T d1piia1 78 QLHGNE-----------------EQLYIDT----LREALPAHVAIWKALSVG--ETLPAR----------EFQHVDKYVL 124 (198)
T ss_dssp EECSCC-----------------CHHHHHH----HHHHSCTTSEEEEEEECS--SSCCCC----------CCTTCCEEEE
T ss_pred eecCCc-----------------cHHHHHH----Hhccccccccceeccchh--hhhhHH----------Hhhhhccccc
Confidence 998521 2333333 22222 22233333332 111100 1134677666
Q ss_pred ccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017176 173 HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 173 h~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
.... +|.+. ..+|..+ +.....|++..||| +++.+.+++++++.+|=+.+|.=.+|-.
T Consensus 125 d~~~---gGtG~-------~fdw~~~----~~~~~~~~~LAGGl-~~~Nv~~a~~~~p~gvDvsSGvE~~pG~ 182 (198)
T d1piia1 125 DNGQ---GGSGQ-------RFDWSLL----NGQSLGNVLLAGGL-GADNCVEAAQTGCAGLDFNSAVESQPGI 182 (198)
T ss_dssp ESCS---CCSSC-------CCCGGGG----TTSCCTTEEEESSC-CTTTHHHHHTTCCSEEEECGGGEEETTE
T ss_pred CCcc---cccce-------eeehhhh----cccccceeEEecCC-CHHHHHHHHhcCCCEEEeCCcccCCCCC
Confidence 4321 22211 1224332 23346789999999 8999999988899999999998777753
|
| >d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (2r)-phospho-3-sulfolactate synthase ComA family: (2r)-phospho-3-sulfolactate synthase ComA domain: (2r)-phospho-3-sulfolactate synthase ComA species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=80.50 E-value=11 Score=31.77 Aligned_cols=81 Identities=11% Similarity=0.124 Sum_probs=50.7
Q ss_pred HHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCC-----CccHHH
Q 017176 79 LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD-----HDSYNQ 153 (376)
Q Consensus 79 ~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~-----~~~~~~ 153 (376)
+.+..+.+++.|||.|||+-|.=. -..+.-.++++.+++. -+.|+.-.|+.. ..+.++
T Consensus 87 ~~~y~~~~~~lGf~~iEiSdg~~~--------------i~~~~~~~~I~~~~~~---G~~V~~EvG~K~~~~~~~~~~~~ 149 (251)
T d1qwga_ 87 FDEFLNECEKLGFEAVEISDGSSD--------------ISLEERNNAIKRAKDN---GFMVLTEVGKKMPDKDKQLTIDD 149 (251)
T ss_dssp HHHHHHHHHHHTCCEEEECCSSSC--------------CCHHHHHHHHHHHHHT---TCEEEEEECCSSHHHHTTCCHHH
T ss_pred HHHHHHHHHHcCCCEEEEcCCccC--------------CCHHHHHHHHHHHHhC---CCEEeecccCCCCCCccccCHHH
Confidence 455567778899999999754221 1234445666655442 234555556552 134666
Q ss_pred HHHHHHHHhhcCCccEEEEccCcc
Q 017176 154 LCDFIYKVSSLSPTRHFIIHSRKA 177 (376)
Q Consensus 154 ~~~~i~~~~e~~Gvd~I~vh~r~~ 177 (376)
.++.+.+-+ ++|++.|++-+|..
T Consensus 150 ~i~~~~~~L-eaGA~~ViiEarEs 172 (251)
T d1qwga_ 150 RIKLINFDL-DAGADYVIIEGRES 172 (251)
T ss_dssp HHHHHHHHH-HHTCSEEEECCTTT
T ss_pred HHHHHHHHH-HCCCceeEeehhhc
Confidence 666655555 59999999999873
|
| >d1r2ra_ c.1.1.1 (A:) Triosephosphate isomerase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=80.43 E-value=0.36 Score=41.60 Aligned_cols=42 Identities=14% Similarity=0.223 Sum_probs=34.7
Q ss_pred CCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHhhCCchhhHhhh
Q 017176 207 DLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHVD 251 (376)
Q Consensus 207 ~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~lf~~~~~ 251 (376)
++||+.-|.| +++.+.+.+. .++||+.||++.| +|. |.+.++
T Consensus 201 ~i~ilYGGSV-~~~N~~~i~~~~~vDG~LVGgASL-~~e-F~~Ii~ 243 (246)
T d1r2ra_ 201 STRIIYGGSV-TGATCKELASQPDVDGFLVGGASL-KPE-FVDIIN 243 (246)
T ss_dssp HCCEEECSCC-CTTTHHHHHTSTTCCEEEESGGGG-STH-HHHHHT
T ss_pred cccEEecCCC-CHHHHHHHhcCCCCCeEEeehhhC-CHH-HHHHHH
Confidence 4789888887 7788888888 8999999999999 488 765543
|
| >d1mo0a_ c.1.1.1 (A:) Triosephosphate isomerase {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=80.36 E-value=0.44 Score=41.34 Aligned_cols=42 Identities=17% Similarity=0.257 Sum_probs=34.5
Q ss_pred CCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHhhCCchhhHhhh
Q 017176 207 DLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHVD 251 (376)
Q Consensus 207 ~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~lf~~~~~ 251 (376)
++||+.-|.| +++.+.+.++ .++||+.||++.| ||. |.+.++
T Consensus 210 ~~~iLYGGSV-~~~N~~~i~~~~~vDG~LVGgASL-~~~-F~~Ii~ 252 (257)
T d1mo0a_ 210 ATRIIYGGSV-TADNAAELGKKPDIDGFLVGGASL-KPD-FVKIIN 252 (257)
T ss_dssp HSCEEEESSC-CTTTHHHHTTSTTCCEEEESGGGG-STH-HHHHHH
T ss_pred cccEEeeCCc-CHHHHHHHhcCCCCCeEEeehHhC-ChH-HHHHHH
Confidence 4788887776 7788888888 7999999999999 588 766554
|
| >d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Biotin synthase domain: Biotin synthase species: Escherichia coli [TaxId: 562]
Probab=80.03 E-value=7.6 Score=33.26 Aligned_cols=143 Identities=13% Similarity=0.165 Sum_probs=67.8
Q ss_pred HHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHh
Q 017176 83 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVS 162 (376)
Q Consensus 83 a~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~ 162 (376)
++.++++|+|.+.++.-+......+... + ...+...++++.+++ .+++++.-+=.|.. ++.++.++.+..+
T Consensus 136 l~~lk~aG~~~i~~~iEs~~~~~~~~~~-~----~~~~~~~~~~~~a~~-~Gi~~~~~~i~G~~--et~~d~~~~l~~l- 206 (312)
T d1r30a_ 136 AQRLANAGLDYYNHNLDTSPEFYGNIIT-T----RTYQERLDTLEKVRD-AGIKVCSGGIVGLG--ETVKDRAGLLLQL- 206 (312)
T ss_dssp HHHHHHHCCCEEECCCBSCHHHHHHHCC-S----SCHHHHHHHHHHHHH-HHCEEECCEEECSS--CCHHHHHHHHHHH-
T ss_pred HHHhhcccceeEecccchhhhhhccCCC-C----CCHHHHHHHHHHHHH-hccceecceEecCc--CcHHHHHHHHHHH-
Confidence 4567778888887766553221111111 2 234555566666654 36677666666764 3445555544433
Q ss_pred hcCCc--cEEEEccCccccCCCCCCCCCCCCcccHHHHH--HHHh-hCCCCeEEEecC-C-CCHHHHHHHHHcCcCeeEE
Q 017176 163 SLSPT--RHFIIHSRKALLNGISPAENRTIPPLKYEYYY--ALLR-DFPDLTFTLNGG-I-NTVDEVNAALRKGAHHVMV 235 (376)
Q Consensus 163 e~~Gv--d~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~--~~~~-~~~~ipVi~nGg-I-~s~~da~~~l~~Gad~Vmi 235 (376)
.+.+. +.+.+...... .|..-.......+ .+.++ ++.+ -.|+..+-..++ . ...+-...+|..||+++|+
T Consensus 207 ~~l~~~~~~i~~~~~~p~-~gT~l~~~~~~~~--~e~l~~iA~~Rl~lp~~~i~i~~~~~~~~~~~~~~~L~~Gan~~~~ 283 (312)
T d1r30a_ 207 ANLPTPPESVPINMLVKV-KGTPLADNDDVDA--FDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFY 283 (312)
T ss_dssp HSSSSCCSEEEEEECCCC-TTSTTSSCCCCCH--HHHHHHHHHHHHHCTTSEEEEESSGGGSCHHHHHHHHHHTCCEEEC
T ss_pred HhcCCCCCeeeeccccCC-CCcccccccCCCH--HHHHHHHHHHHHhCCCcceEEEechhhcCHHHHHHHHhcCCcEEEe
Confidence 23333 34444433221 1111111111111 22211 1222 245655544443 2 2345555677899999998
Q ss_pred ch
Q 017176 236 GR 237 (376)
Q Consensus 236 GR 237 (376)
|-
T Consensus 284 ~~ 285 (312)
T d1r30a_ 284 GC 285 (312)
T ss_dssp SS
T ss_pred cC
Confidence 73
|