Citrus Sinensis ID: 017179
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 376 | 2.2.26 [Sep-21-2011] | |||||||
| B9H5L9 | 385 | Lipoyl synthase, mitochon | yes | no | 0.997 | 0.974 | 0.855 | 1e-180 | |
| B7FM45 | 378 | Lipoyl synthase, mitochon | N/A | no | 0.994 | 0.989 | 0.840 | 1e-178 | |
| Q3LSN5 | 376 | Lipoyl synthase 2, mitoch | N/A | no | 0.997 | 0.997 | 0.845 | 1e-174 | |
| Q3LSN4 | 376 | Lipoyl synthase 1, mitoch | N/A | no | 0.997 | 0.997 | 0.845 | 1e-174 | |
| A5CB81 | 393 | Lipoyl synthase, mitochon | yes | no | 0.917 | 0.877 | 0.861 | 1e-172 | |
| Q9ZWT1 | 374 | Lipoyl synthase, mitochon | yes | no | 0.986 | 0.991 | 0.813 | 1e-166 | |
| A2XU53 | 382 | Lipoyl synthase, mitochon | N/A | no | 0.880 | 0.866 | 0.828 | 1e-163 | |
| Q7XRF1 | 382 | Lipoyl synthase, mitochon | yes | no | 0.880 | 0.866 | 0.825 | 1e-162 | |
| C5Y9R0 | 386 | Lipoyl synthase, mitochon | N/A | no | 0.888 | 0.865 | 0.809 | 1e-161 | |
| B8A031 | 383 | Lipoyl synthase, mitochon | N/A | no | 0.890 | 0.874 | 0.804 | 1e-159 |
| >sp|B9H5L9|LIAS_POPTR Lipoyl synthase, mitochondrial OS=Populus trichocarpa GN=LIP1 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 632 bits (1631), Expect = e-180, Method: Compositional matrix adjust.
Identities = 325/380 (85%), Positives = 346/380 (91%), Gaps = 5/380 (1%)
Query: 1 MRSRFTLALARTLTSRT-----RPFSSSAQTPPTEPPTKFPQTLAGLRARLASESPALSD 55
M+SRFT RTL S T R FSSS T+ P +F QTLAGLRARLA ESP LSD
Sbjct: 1 MQSRFTFLATRTLKSTTTKAKNRTFSSSTVESSTKQPPQFSQTLAGLRARLAVESPTLSD 60
Query: 56 FIDLQSNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPN 115
FI LQSN++YSVEVGTKKKPLPKPKWM+E+IPGG+KYVQIKKKLRELKLHTVCEEAKCPN
Sbjct: 61 FIHLQSNNTYSVEVGTKKKPLPKPKWMREAIPGGEKYVQIKKKLRELKLHTVCEEAKCPN 120
Query: 116 LGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLD 175
LGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSR PPPPDP+EPTNVAEAIASWGLD
Sbjct: 121 LGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRTPPPPDPNEPTNVAEAIASWGLD 180
Query: 176 YVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235
YVVITSVDRDDLADQGSGHFA+TV KLK LKPNMLIEALVPDFRG+ GCV +VAKSGL+V
Sbjct: 181 YVVITSVDRDDLADQGSGHFAETVHKLKTLKPNMLIEALVPDFRGDRGCVEKVAKSGLDV 240
Query: 236 FAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVST 295
FAHNIETVEELQS+VRDHRANFKQSLDVLMMAK+Y P GTLTKTSIMLGCGE P+QVV T
Sbjct: 241 FAHNIETVEELQSSVRDHRANFKQSLDVLMMAKEYAPPGTLTKTSIMLGCGEAPEQVVKT 300
Query: 296 MEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSS 355
MEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITP+AFE+Y+ LGMEMGFRYVASGPMVRSS
Sbjct: 301 MEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPDAFEKYKTLGMEMGFRYVASGPMVRSS 360
Query: 356 YKAGEFYIKSMIESDRAATS 375
YKAGEFYIKSMIESDR+ +S
Sbjct: 361 YKAGEFYIKSMIESDRSVSS 380
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Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. Populus trichocarpa (taxid: 3694) EC: 2EC: .EC: 8EC: .EC: 1EC: .EC: 8 |
| >sp|B7FM45|LIAS_MEDTR Lipoyl synthase, mitochondrial OS=Medicago truncatula GN=LIP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 625 bits (1612), Expect = e-178, Method: Compositional matrix adjust.
Identities = 316/376 (84%), Positives = 340/376 (90%), Gaps = 2/376 (0%)
Query: 1 MRSRFTLALARTLTSRTRPFS-SSAQTPPTEPPTKFPQTLAGLRARLASESPALSDFIDL 59
M SRF +A+ L S T+PFS ++A T T ++FPQ L LRARLA ESP+LSDFI L
Sbjct: 2 MYSRFR-TVAKNLKSTTKPFSFTTATTTTTVSSSEFPQNLTELRARLARESPSLSDFISL 60
Query: 60 QSNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGEC 119
+SN++YSVEVGTKK PLPKPKWMKESIPGG KYVQIKKKLRELKLHTVCEEAKCPN+GEC
Sbjct: 61 KSNNAYSVEVGTKKNPLPKPKWMKESIPGGWKYVQIKKKLRELKLHTVCEEAKCPNMGEC 120
Query: 120 WSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVI 179
WSGGETGTATATIMILGDTCTRGCRFCNVKTSR PPPPDPDEPTNVAEAIASWGLDYVVI
Sbjct: 121 WSGGETGTATATIMILGDTCTRGCRFCNVKTSRTPPPPDPDEPTNVAEAIASWGLDYVVI 180
Query: 180 TSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239
TSV RDDL DQGS HF +TV+KLK LKP++LIEALVPDFRGN CV +V+KSGL+VFAHN
Sbjct: 181 TSVGRDDLPDQGSSHFTETVQKLKILKPSILIEALVPDFRGNAECVEKVSKSGLDVFAHN 240
Query: 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKV 299
IETVEELQSAVRDHRANF QSLDVL MAKDY PAGTLTKTSIMLGCGETPDQ+V TMEKV
Sbjct: 241 IETVEELQSAVRDHRANFNQSLDVLRMAKDYAPAGTLTKTSIMLGCGETPDQIVKTMEKV 300
Query: 300 RAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKAG 359
RAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFE+Y+ LGMEMGFRYVASGPMVRSSYKAG
Sbjct: 301 RAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFEKYQTLGMEMGFRYVASGPMVRSSYKAG 360
Query: 360 EFYIKSMIESDRAATS 375
EFYIKSMI+SDRA +S
Sbjct: 361 EFYIKSMIDSDRAVSS 376
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Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. Medicago truncatula (taxid: 3880) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q3LSN5|LIAS2_PEA Lipoyl synthase 2, mitochondrial OS=Pisum sativum GN=LIP1-2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 611 bits (1576), Expect = e-174, Method: Compositional matrix adjust.
Identities = 317/375 (84%), Positives = 339/375 (90%)
Query: 1 MRSRFTLALARTLTSRTRPFSSSAQTPPTEPPTKFPQTLAGLRARLASESPALSDFIDLQ 60
M SRF + R SSS T T P++ Q LA LRARLA ESP+LSDFI L+
Sbjct: 2 MYSRFRTVAGNLNCAAKRLSSSSTTTTTTSAPSELQQNLAALRARLAMESPSLSDFISLK 61
Query: 61 SNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECW 120
S+++YSVEVGTKKKPLPKPKWMKESIPGG+KYVQIKKKLRELKLHTVCEEAKCPNLGECW
Sbjct: 62 SDNAYSVEVGTKKKPLPKPKWMKESIPGGEKYVQIKKKLRELKLHTVCEEAKCPNLGECW 121
Query: 121 SGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVIT 180
SGGETGTATATIMILGDTCTRGCRFCNVKTSR PPPPDPDEPTNVAEAIASWGLDYVVIT
Sbjct: 122 SGGETGTATATIMILGDTCTRGCRFCNVKTSRTPPPPDPDEPTNVAEAIASWGLDYVVIT 181
Query: 181 SVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNI 240
SVDRDDL DQGSGHF +TV+KLK LKP+MLIEALVPDFRGN CV +V+KSGL+VFAHNI
Sbjct: 182 SVDRDDLPDQGSGHFTETVQKLKALKPSMLIEALVPDFRGNAECVEKVSKSGLDVFAHNI 241
Query: 241 ETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVR 300
ETVEELQSAVRDHRANFKQSLDVLMMAK+Y PAGTLTKTSIMLGCGETPDQ+V TMEKVR
Sbjct: 242 ETVEELQSAVRDHRANFKQSLDVLMMAKEYAPAGTLTKTSIMLGCGETPDQIVKTMEKVR 301
Query: 301 AAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKAGE 360
AAGVDVMTFGQ+MRPSKRHMPVSEYITPEAFE+Y+ LGMEMGFRYVASGPMVRSSYKAGE
Sbjct: 302 AAGVDVMTFGQHMRPSKRHMPVSEYITPEAFEKYQTLGMEMGFRYVASGPMVRSSYKAGE 361
Query: 361 FYIKSMIESDRAATS 375
FYIKSMI+SDRAA+S
Sbjct: 362 FYIKSMIDSDRAASS 376
|
Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. Pisum sativum (taxid: 3888) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q3LSN4|LIAS1_PEA Lipoyl synthase 1, mitochondrial OS=Pisum sativum GN=LIP1-1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 610 bits (1574), Expect = e-174, Method: Compositional matrix adjust.
Identities = 317/375 (84%), Positives = 338/375 (90%)
Query: 1 MRSRFTLALARTLTSRTRPFSSSAQTPPTEPPTKFPQTLAGLRARLASESPALSDFIDLQ 60
M SRF + R SSS T T P++ Q LA LRARLA ESP+LSDFI L+
Sbjct: 2 MYSRFRTVAGNLNCAAKRLSSSSTTTTTTSAPSELQQNLAALRARLAMESPSLSDFISLK 61
Query: 61 SNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECW 120
S+++YSVEVGTKKKPLPKPKWMKESIPGG+KYVQIKKKLRELKLHTVCEEAKCPNLGECW
Sbjct: 62 SDNAYSVEVGTKKKPLPKPKWMKESIPGGEKYVQIKKKLRELKLHTVCEEAKCPNLGECW 121
Query: 121 SGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVIT 180
SGGETGTATATIMILGDTCTRGCRFCNVKTSR PPPPDPDEPTNVAEAIASWGLDYVVIT
Sbjct: 122 SGGETGTATATIMILGDTCTRGCRFCNVKTSRTPPPPDPDEPTNVAEAIASWGLDYVVIT 181
Query: 181 SVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNI 240
SVDRDDL DQGSGHF +TV+KLK LKP+ LIEALVPDFRGN CV +V+KSGL+VFAHNI
Sbjct: 182 SVDRDDLPDQGSGHFTETVQKLKALKPSTLIEALVPDFRGNAECVEKVSKSGLDVFAHNI 241
Query: 241 ETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVR 300
ETVEELQSAVRDHRANFKQSLDVLMMAK+Y PAGTLTKTSIMLGCGETPDQ+V TMEKVR
Sbjct: 242 ETVEELQSAVRDHRANFKQSLDVLMMAKEYAPAGTLTKTSIMLGCGETPDQIVKTMEKVR 301
Query: 301 AAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKAGE 360
AAGVDVMTFGQYMRPSKRHMPVSEYITPEAFE+Y+ LGMEMGFRYVASGPMVRSSYKAGE
Sbjct: 302 AAGVDVMTFGQYMRPSKRHMPVSEYITPEAFEKYQTLGMEMGFRYVASGPMVRSSYKAGE 361
Query: 361 FYIKSMIESDRAATS 375
FYIKSMI+SDRAA+S
Sbjct: 362 FYIKSMIDSDRAASS 376
|
Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. Pisum sativum (taxid: 3888) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|A5CB81|LIAS_VITVI Lipoyl synthase, mitochondrial OS=Vitis vinifera GN=LIP1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 605 bits (1560), Expect = e-172, Method: Compositional matrix adjust.
Identities = 299/347 (86%), Positives = 322/347 (92%), Gaps = 2/347 (0%)
Query: 26 TPPTEPPTKFPQTLAGLRARLASESPALSDFIDLQSNSSYSVEVGTKKKPLPKPKWMKES 85
+PPT P + PQTLA LR RLA ESP+LSDF+ LQ++ YSVEVGTKKKPL KPKWMKES
Sbjct: 35 SPPTNP--EPPQTLASLRHRLAVESPSLSDFVRLQTSDDYSVEVGTKKKPLSKPKWMKES 92
Query: 86 IPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRF 145
IPGG KY QIKKKLR+L LHTVCEEA+CPN+GECWSGGETGTATATIMILGDTCTRGCRF
Sbjct: 93 IPGGAKYTQIKKKLRQLNLHTVCEEARCPNMGECWSGGETGTATATIMILGDTCTRGCRF 152
Query: 146 CNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205
CNVKTSR PPPPDPDEP+ VAEAIASWGLDYVVITSVDRDDL DQGSGHFA+TV+KLK L
Sbjct: 153 CNVKTSRTPPPPDPDEPSKVAEAIASWGLDYVVITSVDRDDLPDQGSGHFAETVQKLKIL 212
Query: 206 KPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLM 265
KPNMLIEALVPDFRG+ GCV +V+KSGL+VFAHNIETVEELQSAVRDHRANFKQSL+VL
Sbjct: 213 KPNMLIEALVPDFRGDPGCVEKVSKSGLDVFAHNIETVEELQSAVRDHRANFKQSLEVLK 272
Query: 266 MAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEY 325
+AK+Y AGTLTKTSIMLGCGETPDQVV TMEKVRAAGVDVMTFGQYMRPSKRHMPVSEY
Sbjct: 273 LAKEYADAGTLTKTSIMLGCGETPDQVVRTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEY 332
Query: 326 ITPEAFERYRALGMEMGFRYVASGPMVRSSYKAGEFYIKSMIESDRA 372
ITPEAFE+YR LGM+MGFRYVASGPMVRSSYKAGEFYIKSMI++DRA
Sbjct: 333 ITPEAFEKYRILGMDMGFRYVASGPMVRSSYKAGEFYIKSMIDADRA 379
|
Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. Vitis vinifera (taxid: 29760) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q9ZWT1|LIAS_ARATH Lipoyl synthase, mitochondrial OS=Arabidopsis thaliana GN=LIP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 584 bits (1506), Expect = e-166, Method: Compositional matrix adjust.
Identities = 306/376 (81%), Positives = 335/376 (89%), Gaps = 5/376 (1%)
Query: 1 MRSRFTLALARTLTSRTRPFSSSAQTPPTEPPTKFPQTLAGLRARLASESPALSDFIDLQ 60
M SR L L R L +R FSSS+ P T+ P++L LRARLA+ESP+L+DFI
Sbjct: 1 MHSRSAL-LYRFLRPASRCFSSSSAVTPV-TVTQSPKSLEALRARLANESPSLTDFIH-- 56
Query: 61 SNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECW 120
+YSVEVGTKKKPLPKPKWMKESIPGG++YVQIKKKLR+LKLHTVCEEAKCPNLGECW
Sbjct: 57 -GDTYSVEVGTKKKPLPKPKWMKESIPGGERYVQIKKKLRDLKLHTVCEEAKCPNLGECW 115
Query: 121 SGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVIT 180
SGGETGTATATIMILGDTCTRGCRFCNVKTSR PPPPDP+EP NVAEAIASWG+DYVVIT
Sbjct: 116 SGGETGTATATIMILGDTCTRGCRFCNVKTSRTPPPPDPNEPNNVAEAIASWGVDYVVIT 175
Query: 181 SVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNI 240
SVDRDDL DQGSGHFA+TV++LK LKP MLIEALVPDFRG+ GCV +V+KSGL+V AHNI
Sbjct: 176 SVDRDDLPDQGSGHFAETVQRLKFLKPEMLIEALVPDFRGDGGCVEKVSKSGLDVLAHNI 235
Query: 241 ETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVR 300
ETVEELQS VRDHRANFKQSLDVL MAK+Y PAGTLTKTS+MLGCGETPDQVV TMEKVR
Sbjct: 236 ETVEELQSFVRDHRANFKQSLDVLRMAKEYAPAGTLTKTSVMLGCGETPDQVVKTMEKVR 295
Query: 301 AAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKAGE 360
AAGVDVMTFGQYMRPSKRHMPV+EY+TP+AFERYR LGMEMGFRYVASGPMVRSSYKAGE
Sbjct: 296 AAGVDVMTFGQYMRPSKRHMPVAEYVTPDAFERYRLLGMEMGFRYVASGPMVRSSYKAGE 355
Query: 361 FYIKSMIESDRAATSS 376
+YIKSMIE+DR A+ S
Sbjct: 356 YYIKSMIEADRVASPS 371
|
Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|A2XU53|LIAS_ORYSI Lipoyl synthase, mitochondrial OS=Oryza sativa subsp. indica GN=LIP1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 575 bits (1481), Expect = e-163, Method: Compositional matrix adjust.
Identities = 280/338 (82%), Positives = 309/338 (91%), Gaps = 7/338 (2%)
Query: 39 LAGLRARLASESPALSDFIDLQSNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKK 98
LA LR RL +++P+L DF +YSVEVGT+KKPLPKPKWMKE+IPGG KY IK K
Sbjct: 50 LAELRQRLQADAPSLGDF-------TYSVEVGTRKKPLPKPKWMKETIPGGAKYAGIKAK 102
Query: 99 LRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPD 158
LRELKLHTVCEEA+CPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSR PPPPD
Sbjct: 103 LRELKLHTVCEEARCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRTPPPPD 162
Query: 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF 218
PDEP+NVA+AIASWGL+Y+VITSVDRDDL DQGSGHFA+TV+KLK LKP MLIEALVPDF
Sbjct: 163 PDEPSNVAQAIASWGLEYIVITSVDRDDLPDQGSGHFAETVQKLKVLKPEMLIEALVPDF 222
Query: 219 RGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTK 278
RG+ CV +VA SGL+VFAHNIETVEELQ VRDHRANFKQS+DVL +AK+Y PAGTLTK
Sbjct: 223 RGDPACVEKVATSGLHVFAHNIETVEELQRNVRDHRANFKQSIDVLKLAKEYAPAGTLTK 282
Query: 279 TSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALG 338
TSIMLGCGETPDQV+STMEKVRAAGVDVMTFGQYMRPSKRHMPVSEY+TPEAFERYR+LG
Sbjct: 283 TSIMLGCGETPDQVISTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYVTPEAFERYRSLG 342
Query: 339 MEMGFRYVASGPMVRSSYKAGEFYIKSMIESDRAATSS 376
++MGFRYVASGPMVRSSYKAGEFYIK+MIE+DRA ++
Sbjct: 343 VDMGFRYVASGPMVRSSYKAGEFYIKAMIEADRAKATT 380
|
Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. Oryza sativa subsp. indica (taxid: 39946) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q7XRF1|LIAS_ORYSJ Lipoyl synthase, mitochondrial OS=Oryza sativa subsp. japonica GN=LIP1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 572 bits (1474), Expect = e-162, Method: Compositional matrix adjust.
Identities = 279/338 (82%), Positives = 308/338 (91%), Gaps = 7/338 (2%)
Query: 39 LAGLRARLASESPALSDFIDLQSNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKK 98
LA LR RL +++P+L DF +YSVEVGT+KKPLPKPKWMKE+IPGG KY IK K
Sbjct: 50 LAELRQRLQADAPSLGDF-------TYSVEVGTRKKPLPKPKWMKETIPGGAKYAGIKAK 102
Query: 99 LRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPD 158
LRELKLHTVCEEA+CPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSR PPPPD
Sbjct: 103 LRELKLHTVCEEARCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRTPPPPD 162
Query: 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF 218
PDEP+NVA+AIASWGL+Y+VITSVDRDDL DQGSGHFA+TV+KLK LKP MLIEALVPDF
Sbjct: 163 PDEPSNVAQAIASWGLEYIVITSVDRDDLPDQGSGHFAETVQKLKVLKPEMLIEALVPDF 222
Query: 219 RGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTK 278
RG+ CV +VA SGL+VFAHNIETVEELQ VRDHRANFKQS+DVL +AK+Y PAGTLTK
Sbjct: 223 RGDPACVEKVATSGLHVFAHNIETVEELQRNVRDHRANFKQSIDVLKLAKEYAPAGTLTK 282
Query: 279 TSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALG 338
TSIMLGCGETPDQV+ST EKVRAAGVDVMTFGQYMRPSKRHMPVSEY+TPEAFERYR+LG
Sbjct: 283 TSIMLGCGETPDQVISTTEKVRAAGVDVMTFGQYMRPSKRHMPVSEYVTPEAFERYRSLG 342
Query: 339 MEMGFRYVASGPMVRSSYKAGEFYIKSMIESDRAATSS 376
++MGFRYVASGPMVRSSYKAGEFYIK+MIE+DRA ++
Sbjct: 343 VDMGFRYVASGPMVRSSYKAGEFYIKAMIEADRAKATT 380
|
Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|C5Y9R0|LIAS_SORBI Lipoyl synthase, mitochondrial OS=Sorghum bicolor GN=LIP1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 568 bits (1465), Expect = e-161, Method: Compositional matrix adjust.
Identities = 276/341 (80%), Positives = 309/341 (90%), Gaps = 7/341 (2%)
Query: 36 PQTLAGLRARLASESPALSDFIDLQSNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQI 95
P LA LR RL +++P+L DF +YSVEVGT+++PLPKPKWMKE++PGG KY I
Sbjct: 48 PGRLAELRRRLQADAPSLGDF-------AYSVEVGTRQRPLPKPKWMKETVPGGAKYAAI 100
Query: 96 KKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPP 155
K KLRELKLHTVCEEA+CPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSR PP
Sbjct: 101 KAKLRELKLHTVCEEARCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRTPP 160
Query: 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALV 215
PPDPDEP+NVA+AIASWGL+Y+VITSVDRDDL DQGSGHFA+TV+KLK LKP MLIEALV
Sbjct: 161 PPDPDEPSNVAQAIASWGLEYIVITSVDRDDLPDQGSGHFAETVQKLKALKPEMLIEALV 220
Query: 216 PDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGT 275
PDFRG+ CV +VA SGL+VFAHNIETVEELQ VRD+RANFKQS+DVL MAK+Y P GT
Sbjct: 221 PDFRGDPSCVEKVATSGLHVFAHNIETVEELQRNVRDYRANFKQSIDVLKMAKEYAPPGT 280
Query: 276 LTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYR 335
LTKTSIMLGCGETPDQV+STMEKVRAAGVDV+TFGQYMRPSKRHMPVSEY+TPEAFE+YR
Sbjct: 281 LTKTSIMLGCGETPDQVISTMEKVRAAGVDVITFGQYMRPSKRHMPVSEYVTPEAFEKYR 340
Query: 336 ALGMEMGFRYVASGPMVRSSYKAGEFYIKSMIESDRAATSS 376
ALG+EMGFRYVASGPMVRSSYKAGEFYIK+MIE+DR+ ++
Sbjct: 341 ALGVEMGFRYVASGPMVRSSYKAGEFYIKAMIEADRSKATT 381
|
Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. Sorghum bicolor (taxid: 4558) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|B8A031|LIAS_MAIZE Lipoyl synthase, mitochondrial OS=Zea mays GN=LIP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 562 bits (1448), Expect = e-159, Method: Compositional matrix adjust.
Identities = 275/342 (80%), Positives = 306/342 (89%), Gaps = 7/342 (2%)
Query: 31 PPTKFPQTLAGLRARLASESPALSDFIDLQSNSSYSVEVGTKKKPLPKPKWMKESIPGGD 90
PP LA LR RL +++P+L DF +YSVEVGT+++PLPKPKWMKE++PGG
Sbjct: 40 PPAAGAGRLAELRRRLQADAPSLGDF-------TYSVEVGTRQRPLPKPKWMKETVPGGA 92
Query: 91 KYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKT 150
KY IK KLRELKLHTVCEEA+CPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKT
Sbjct: 93 KYAAIKAKLRELKLHTVCEEARCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKT 152
Query: 151 SRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNML 210
SR PPPPDPDEP+NVA+AIASWGL+Y+VITSVDRDDL DQGSGHFA+TV+KLK LKP ML
Sbjct: 153 SRTPPPPDPDEPSNVAQAIASWGLEYIVITSVDRDDLPDQGSGHFAETVQKLKALKPEML 212
Query: 211 IEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDY 270
IEALVPDFRG+ CV +VA SGL+VFAHNIETVEELQ VRD+RANFKQS+DVL MAK+Y
Sbjct: 213 IEALVPDFRGDPSCVEKVATSGLHVFAHNIETVEELQRNVRDYRANFKQSIDVLEMAKEY 272
Query: 271 VPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEA 330
P GTLTKTSIMLGCGETPDQV+ TMEKVRAA VDV+TFGQYMRPSKRHMPVSEY+TPEA
Sbjct: 273 APPGTLTKTSIMLGCGETPDQVIRTMEKVRAADVDVITFGQYMRPSKRHMPVSEYVTPEA 332
Query: 331 FERYRALGMEMGFRYVASGPMVRSSYKAGEFYIKSMIESDRA 372
FE+YRALG+EMGFRYVASGPMVRSSYKAGEFYIK+MIE++RA
Sbjct: 333 FEKYRALGVEMGFRYVASGPMVRSSYKAGEFYIKAMIEAERA 374
|
Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. Zea mays (taxid: 4577) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 376 | ||||||
| 118489021 | 385 | unknown [Populus trichocarpa x Populus d | 0.997 | 0.974 | 0.855 | 1e-180 | |
| 224081274 | 385 | predicted protein [Populus trichocarpa] | 0.997 | 0.974 | 0.855 | 1e-179 | |
| 388520169 | 378 | unknown [Medicago truncatula] | 0.994 | 0.989 | 0.840 | 1e-177 | |
| 308191435 | 378 | RecName: Full=Lipoyl synthase, mitochond | 0.994 | 0.989 | 0.840 | 1e-176 | |
| 388511141 | 378 | unknown [Medicago truncatula] | 0.989 | 0.984 | 0.842 | 1e-176 | |
| 356549944 | 378 | PREDICTED: lipoyl synthase 2, mitochondr | 0.989 | 0.984 | 0.847 | 1e-175 | |
| 356543805 | 382 | PREDICTED: lipoyl synthase 2, mitochondr | 0.997 | 0.981 | 0.845 | 1e-175 | |
| 122216661 | 376 | RecName: Full=Lipoyl synthase 2, mitocho | 0.997 | 0.997 | 0.845 | 1e-172 | |
| 122216660 | 376 | RecName: Full=Lipoyl synthase 1, mitocho | 0.997 | 0.997 | 0.845 | 1e-172 | |
| 359496821 | 393 | PREDICTED: LOW QUALITY PROTEIN: lipoyl s | 0.917 | 0.877 | 0.861 | 1e-170 |
| >gi|118489021|gb|ABK96318.1| unknown [Populus trichocarpa x Populus deltoides] | Back alignment and taxonomy information |
|---|
Score = 636 bits (1640), Expect = e-180, Method: Compositional matrix adjust.
Identities = 325/380 (85%), Positives = 345/380 (90%), Gaps = 5/380 (1%)
Query: 1 MRSRFTLALARTLTSRT-----RPFSSSAQTPPTEPPTKFPQTLAGLRARLASESPALSD 55
M+SRFT RTL S T R FSSS T+ P +F QTLAGLRARLA ESP LSD
Sbjct: 1 MQSRFTSLATRTLKSTTTKAKNRTFSSSTVESSTKQPPQFSQTLAGLRARLAVESPTLSD 60
Query: 56 FIDLQSNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPN 115
FI LQSN++YSVEVGTKKKPLPKPKWM+E+IPGG+KYV IKKKLRELKLHTVCEEAKCPN
Sbjct: 61 FIHLQSNNTYSVEVGTKKKPLPKPKWMREAIPGGEKYVHIKKKLRELKLHTVCEEAKCPN 120
Query: 116 LGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLD 175
LGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSR PPPPDP+EPTNVAEAIASWGLD
Sbjct: 121 LGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRKPPPPDPNEPTNVAEAIASWGLD 180
Query: 176 YVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235
YVVITSVDRDDLADQGSGHFA+TV KLK LKPNMLIEALVPDFRG+ GCV +VAKSGL+V
Sbjct: 181 YVVITSVDRDDLADQGSGHFAETVHKLKTLKPNMLIEALVPDFRGDRGCVEKVAKSGLDV 240
Query: 236 FAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVST 295
FAHNIETVEELQS+VRDHRANFKQSLDVLMMAK+Y P GTLTKTSIMLGCGE P+QVV T
Sbjct: 241 FAHNIETVEELQSSVRDHRANFKQSLDVLMMAKEYAPPGTLTKTSIMLGCGEAPEQVVKT 300
Query: 296 MEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSS 355
MEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITP+AFE+YR LGMEMGFRYVASGPMVRSS
Sbjct: 301 MEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPDAFEKYRTLGMEMGFRYVASGPMVRSS 360
Query: 356 YKAGEFYIKSMIESDRAATS 375
YKAGEFYIKSMIESDR+ +S
Sbjct: 361 YKAGEFYIKSMIESDRSVSS 380
|
Source: Populus trichocarpa x Populus deltoides Species: Populus trichocarpa x Populus deltoides Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224081274|ref|XP_002306361.1| predicted protein [Populus trichocarpa] gi|308191438|sp|B9H5L9.1|LIAS_POPTR RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic acid synthase; Flags: Precursor gi|222855810|gb|EEE93357.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 632 bits (1631), Expect = e-179, Method: Compositional matrix adjust.
Identities = 325/380 (85%), Positives = 346/380 (91%), Gaps = 5/380 (1%)
Query: 1 MRSRFTLALARTLTSRT-----RPFSSSAQTPPTEPPTKFPQTLAGLRARLASESPALSD 55
M+SRFT RTL S T R FSSS T+ P +F QTLAGLRARLA ESP LSD
Sbjct: 1 MQSRFTFLATRTLKSTTTKAKNRTFSSSTVESSTKQPPQFSQTLAGLRARLAVESPTLSD 60
Query: 56 FIDLQSNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPN 115
FI LQSN++YSVEVGTKKKPLPKPKWM+E+IPGG+KYVQIKKKLRELKLHTVCEEAKCPN
Sbjct: 61 FIHLQSNNTYSVEVGTKKKPLPKPKWMREAIPGGEKYVQIKKKLRELKLHTVCEEAKCPN 120
Query: 116 LGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLD 175
LGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSR PPPPDP+EPTNVAEAIASWGLD
Sbjct: 121 LGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRTPPPPDPNEPTNVAEAIASWGLD 180
Query: 176 YVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235
YVVITSVDRDDLADQGSGHFA+TV KLK LKPNMLIEALVPDFRG+ GCV +VAKSGL+V
Sbjct: 181 YVVITSVDRDDLADQGSGHFAETVHKLKTLKPNMLIEALVPDFRGDRGCVEKVAKSGLDV 240
Query: 236 FAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVST 295
FAHNIETVEELQS+VRDHRANFKQSLDVLMMAK+Y P GTLTKTSIMLGCGE P+QVV T
Sbjct: 241 FAHNIETVEELQSSVRDHRANFKQSLDVLMMAKEYAPPGTLTKTSIMLGCGEAPEQVVKT 300
Query: 296 MEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSS 355
MEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITP+AFE+Y+ LGMEMGFRYVASGPMVRSS
Sbjct: 301 MEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPDAFEKYKTLGMEMGFRYVASGPMVRSS 360
Query: 356 YKAGEFYIKSMIESDRAATS 375
YKAGEFYIKSMIESDR+ +S
Sbjct: 361 YKAGEFYIKSMIESDRSVSS 380
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388520169|gb|AFK48146.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 626 bits (1615), Expect = e-177, Method: Compositional matrix adjust.
Identities = 316/376 (84%), Positives = 342/376 (90%), Gaps = 2/376 (0%)
Query: 1 MRSRFTLALARTLTSRTRPFS-SSAQTPPTEPPTKFPQTLAGLRARLASESPALSDFIDL 59
M SRF +A+ L S ++PFS ++A T T ++FPQ L LRARLA ESP+LSDFI L
Sbjct: 2 MYSRFR-TVAKNLKSTSKPFSFTTATTTTTVSSSEFPQNLTELRARLARESPSLSDFISL 60
Query: 60 QSNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGEC 119
+SN++YSVEVGTKK PLPKPKWMKESIPGG KYVQIKKKLRELKLHTVCEEAKCPN+GEC
Sbjct: 61 KSNNAYSVEVGTKKNPLPKPKWMKESIPGGWKYVQIKKKLRELKLHTVCEEAKCPNMGEC 120
Query: 120 WSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVI 179
WSGGETGTATATIMILGDTCTRGCRFCNVKTSR PPPPDPDEPTNVAEAIASWGLDYVVI
Sbjct: 121 WSGGETGTATATIMILGDTCTRGCRFCNVKTSRTPPPPDPDEPTNVAEAIASWGLDYVVI 180
Query: 180 TSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239
TSVDRDDL DQGS HF +TV+KLK LKP++LIEALVPDFRGN CV +V+KSGL+VFAH+
Sbjct: 181 TSVDRDDLPDQGSSHFTETVQKLKILKPSILIEALVPDFRGNAECVEKVSKSGLDVFAHS 240
Query: 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKV 299
IETVEELQSAVRDHRANF QSLDVL MAKDY PAGTLTKTSIMLGCGETPDQ+V TMEKV
Sbjct: 241 IETVEELQSAVRDHRANFNQSLDVLRMAKDYAPAGTLTKTSIMLGCGETPDQIVKTMEKV 300
Query: 300 RAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKAG 359
RAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFE+Y+ALGMEMGFRYVASGPMVRSSYKAG
Sbjct: 301 RAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFEKYQALGMEMGFRYVASGPMVRSSYKAG 360
Query: 360 EFYIKSMIESDRAATS 375
EFYIKSMI+SDRA +S
Sbjct: 361 EFYIKSMIDSDRAVSS 376
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|308191435|sp|B7FM45.1|LIAS_MEDTR RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic acid synthase; Flags: Precursor gi|217074936|gb|ACJ85828.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 625 bits (1612), Expect = e-176, Method: Compositional matrix adjust.
Identities = 316/376 (84%), Positives = 340/376 (90%), Gaps = 2/376 (0%)
Query: 1 MRSRFTLALARTLTSRTRPFS-SSAQTPPTEPPTKFPQTLAGLRARLASESPALSDFIDL 59
M SRF +A+ L S T+PFS ++A T T ++FPQ L LRARLA ESP+LSDFI L
Sbjct: 2 MYSRFR-TVAKNLKSTTKPFSFTTATTTTTVSSSEFPQNLTELRARLARESPSLSDFISL 60
Query: 60 QSNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGEC 119
+SN++YSVEVGTKK PLPKPKWMKESIPGG KYVQIKKKLRELKLHTVCEEAKCPN+GEC
Sbjct: 61 KSNNAYSVEVGTKKNPLPKPKWMKESIPGGWKYVQIKKKLRELKLHTVCEEAKCPNMGEC 120
Query: 120 WSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVI 179
WSGGETGTATATIMILGDTCTRGCRFCNVKTSR PPPPDPDEPTNVAEAIASWGLDYVVI
Sbjct: 121 WSGGETGTATATIMILGDTCTRGCRFCNVKTSRTPPPPDPDEPTNVAEAIASWGLDYVVI 180
Query: 180 TSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239
TSV RDDL DQGS HF +TV+KLK LKP++LIEALVPDFRGN CV +V+KSGL+VFAHN
Sbjct: 181 TSVGRDDLPDQGSSHFTETVQKLKILKPSILIEALVPDFRGNAECVEKVSKSGLDVFAHN 240
Query: 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKV 299
IETVEELQSAVRDHRANF QSLDVL MAKDY PAGTLTKTSIMLGCGETPDQ+V TMEKV
Sbjct: 241 IETVEELQSAVRDHRANFNQSLDVLRMAKDYAPAGTLTKTSIMLGCGETPDQIVKTMEKV 300
Query: 300 RAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKAG 359
RAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFE+Y+ LGMEMGFRYVASGPMVRSSYKAG
Sbjct: 301 RAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFEKYQTLGMEMGFRYVASGPMVRSSYKAG 360
Query: 360 EFYIKSMIESDRAATS 375
EFYIKSMI+SDRA +S
Sbjct: 361 EFYIKSMIDSDRAVSS 376
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388511141|gb|AFK43632.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 623 bits (1606), Expect = e-176, Method: Compositional matrix adjust.
Identities = 315/374 (84%), Positives = 338/374 (90%), Gaps = 2/374 (0%)
Query: 1 MRSRFTLALARTLTSRTRPFS-SSAQTPPTEPPTKFPQTLAGLRARLASESPALSDFIDL 59
M SRF +A+ L S T+PFS ++A T T ++FPQ L LRARLA ESP+LSDFI L
Sbjct: 2 MYSRFR-TVAKNLKSTTKPFSFTTATTTTTVSSSEFPQNLTELRARLARESPSLSDFISL 60
Query: 60 QSNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGEC 119
+SN++YSVEVGTKK PLPKPKWMKESIPGG KYVQIKKKLRELKLHTVCEEAKCPN+GEC
Sbjct: 61 KSNNAYSVEVGTKKNPLPKPKWMKESIPGGWKYVQIKKKLRELKLHTVCEEAKCPNMGEC 120
Query: 120 WSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVI 179
WSGGETGTATATIMILGDTCTRGCRFCNVKTSR PPPPDPDEPTNVAEAIASWGLDYVVI
Sbjct: 121 WSGGETGTATATIMILGDTCTRGCRFCNVKTSRTPPPPDPDEPTNVAEAIASWGLDYVVI 180
Query: 180 TSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239
TSV RDDL DQGS HF +TV+KLK LKP++LIEALVPDFRGN CV +V+KSGL+VFAHN
Sbjct: 181 TSVGRDDLPDQGSSHFTETVQKLKILKPSILIEALVPDFRGNAECVEKVSKSGLDVFAHN 240
Query: 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKV 299
IETVEELQSAVRDHRANF QSLDVL MAKDY PAGTLTKTSIMLGCGETPDQ+V TMEKV
Sbjct: 241 IETVEELQSAVRDHRANFNQSLDVLRMAKDYAPAGTLTKTSIMLGCGETPDQIVKTMEKV 300
Query: 300 RAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKAG 359
RAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFE+Y+ LGMEMGFRYVASGPMVRSSYKAG
Sbjct: 301 RAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFEKYQTLGMEMGFRYVASGPMVRSSYKAG 360
Query: 360 EFYIKSMIESDRAA 373
EFYIKSMI+SDRA
Sbjct: 361 EFYIKSMIDSDRAV 374
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549944|ref|XP_003543350.1| PREDICTED: lipoyl synthase 2, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust.
Identities = 316/373 (84%), Positives = 342/373 (91%), Gaps = 1/373 (0%)
Query: 1 MRSRFTLALARTLTSRTRPFSSSAQTPPTEPPTKFPQTLAGLRARLASESPALSDFIDLQ 60
M SR ++A + R F SS+ P P++ PQTLAGLRARLA ESP+LSDF+ L+
Sbjct: 3 MHSRIR-SVAGNIKCAARLFCSSSTITPAAAPSQLPQTLAGLRARLAEESPSLSDFVALK 61
Query: 61 SNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECW 120
S+S+YSVEVGTKKKPLPKPKWMKE++PGG+KYVQIKKKLRELKLHTVCEEAKCPNLGECW
Sbjct: 62 SDSAYSVEVGTKKKPLPKPKWMKEAVPGGEKYVQIKKKLRELKLHTVCEEAKCPNLGECW 121
Query: 121 SGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVIT 180
SGGETGTATATIMILGDTCTRGCRFCNVKTSR PPPPDPDEPTNVAEAIASWGLDYVVIT
Sbjct: 122 SGGETGTATATIMILGDTCTRGCRFCNVKTSRTPPPPDPDEPTNVAEAIASWGLDYVVIT 181
Query: 181 SVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNI 240
SVDRDDL DQGSGHF++TV+KLK LKPNMLIEALVPDFRG+ CV +VAKSGL+VFAHNI
Sbjct: 182 SVDRDDLPDQGSGHFSETVQKLKALKPNMLIEALVPDFRGDADCVEKVAKSGLDVFAHNI 241
Query: 241 ETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVR 300
ETVEELQ+ VRDHRANFKQSLDVLMMAK+Y PAGTLTKTSIMLGCGETPDQVV TMEKVR
Sbjct: 242 ETVEELQNFVRDHRANFKQSLDVLMMAKEYAPAGTLTKTSIMLGCGETPDQVVKTMEKVR 301
Query: 301 AAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKAGE 360
AAGVDVMTFGQYMRPSKRHMPVSEY+TPEAF++Y+ LGMEMGFRYVASGPMVRSSYKAGE
Sbjct: 302 AAGVDVMTFGQYMRPSKRHMPVSEYVTPEAFDKYQKLGMEMGFRYVASGPMVRSSYKAGE 361
Query: 361 FYIKSMIESDRAA 373
FYIKSMIESDRAA
Sbjct: 362 FYIKSMIESDRAA 374
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356543805|ref|XP_003540350.1| PREDICTED: lipoyl synthase 2, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust.
Identities = 318/376 (84%), Positives = 342/376 (90%), Gaps = 1/376 (0%)
Query: 1 MRSRFTLALARTLTSRTRPFSSSAQTPPTEPPTKFPQTLAGLRARLASESPALSDFIDLQ 60
M SR ++A + R F SS+ T P P +FPQTLAGLRARLA ESP+LSDF+ L+
Sbjct: 3 MHSRVR-SVAGNIKCAARLFCSSSTTTPPAAPLQFPQTLAGLRARLAEESPSLSDFLALK 61
Query: 61 SNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECW 120
S S+YSVEVGTKKKPLPKPKWMKE++PGG+KYVQIKKKLRELKLHTVCEEA+CPNLGECW
Sbjct: 62 SESAYSVEVGTKKKPLPKPKWMKEAVPGGEKYVQIKKKLRELKLHTVCEEARCPNLGECW 121
Query: 121 SGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVIT 180
SGGETGTATATIMILGDTCTRGCRFCNVKTSR PPPPDPDEPTNVAEAIASWGLDYVVIT
Sbjct: 122 SGGETGTATATIMILGDTCTRGCRFCNVKTSRTPPPPDPDEPTNVAEAIASWGLDYVVIT 181
Query: 181 SVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNI 240
SVDRDDL DQGSGHF +TV+KLK LKPNMLIEALVPDFRG+ CV +VAKSGL+VFAHNI
Sbjct: 182 SVDRDDLPDQGSGHFTETVQKLKALKPNMLIEALVPDFRGDADCVEKVAKSGLDVFAHNI 241
Query: 241 ETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVR 300
ETVEELQS VRDHRANFKQSLDVLMMAK+ PAGTLTKTSIMLGCGETPDQVV TMEKVR
Sbjct: 242 ETVEELQSVVRDHRANFKQSLDVLMMAKENAPAGTLTKTSIMLGCGETPDQVVKTMEKVR 301
Query: 301 AAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKAGE 360
AAGVDVMTFGQYMRPSKRHMPVSEY+TPEAF++Y+ LGMEMGFRYVASGPMVRSSYKAGE
Sbjct: 302 AAGVDVMTFGQYMRPSKRHMPVSEYVTPEAFDKYQKLGMEMGFRYVASGPMVRSSYKAGE 361
Query: 361 FYIKSMIESDRAATSS 376
FYIKSMIESDRAA+ S
Sbjct: 362 FYIKSMIESDRAASPS 377
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|122216661|sp|Q3LSN5.1|LIAS2_PEA RecName: Full=Lipoyl synthase 2, mitochondrial; AltName: Full=Lipoate synthase 2; Short=LS 2; Short=Lip-syn 2; AltName: Full=Lipoic acid synthase 2; Flags: Precursor gi|75860376|gb|ABA29155.1| putative lipoic acid synthase [Pisum sativum] | Back alignment and taxonomy information |
|---|
Score = 611 bits (1576), Expect = e-172, Method: Compositional matrix adjust.
Identities = 317/375 (84%), Positives = 339/375 (90%)
Query: 1 MRSRFTLALARTLTSRTRPFSSSAQTPPTEPPTKFPQTLAGLRARLASESPALSDFIDLQ 60
M SRF + R SSS T T P++ Q LA LRARLA ESP+LSDFI L+
Sbjct: 2 MYSRFRTVAGNLNCAAKRLSSSSTTTTTTSAPSELQQNLAALRARLAMESPSLSDFISLK 61
Query: 61 SNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECW 120
S+++YSVEVGTKKKPLPKPKWMKESIPGG+KYVQIKKKLRELKLHTVCEEAKCPNLGECW
Sbjct: 62 SDNAYSVEVGTKKKPLPKPKWMKESIPGGEKYVQIKKKLRELKLHTVCEEAKCPNLGECW 121
Query: 121 SGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVIT 180
SGGETGTATATIMILGDTCTRGCRFCNVKTSR PPPPDPDEPTNVAEAIASWGLDYVVIT
Sbjct: 122 SGGETGTATATIMILGDTCTRGCRFCNVKTSRTPPPPDPDEPTNVAEAIASWGLDYVVIT 181
Query: 181 SVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNI 240
SVDRDDL DQGSGHF +TV+KLK LKP+MLIEALVPDFRGN CV +V+KSGL+VFAHNI
Sbjct: 182 SVDRDDLPDQGSGHFTETVQKLKALKPSMLIEALVPDFRGNAECVEKVSKSGLDVFAHNI 241
Query: 241 ETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVR 300
ETVEELQSAVRDHRANFKQSLDVLMMAK+Y PAGTLTKTSIMLGCGETPDQ+V TMEKVR
Sbjct: 242 ETVEELQSAVRDHRANFKQSLDVLMMAKEYAPAGTLTKTSIMLGCGETPDQIVKTMEKVR 301
Query: 301 AAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKAGE 360
AAGVDVMTFGQ+MRPSKRHMPVSEYITPEAFE+Y+ LGMEMGFRYVASGPMVRSSYKAGE
Sbjct: 302 AAGVDVMTFGQHMRPSKRHMPVSEYITPEAFEKYQTLGMEMGFRYVASGPMVRSSYKAGE 361
Query: 361 FYIKSMIESDRAATS 375
FYIKSMI+SDRAA+S
Sbjct: 362 FYIKSMIDSDRAASS 376
|
Source: Pisum sativum Species: Pisum sativum Genus: Pisum Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|122216660|sp|Q3LSN4.1|LIAS1_PEA RecName: Full=Lipoyl synthase 1, mitochondrial; AltName: Full=Lipoate synthase 1; Short=LS 1; Short=Lip-syn 1; AltName: Full=Lipoic acid synthase 1; Flags: Precursor gi|75860378|gb|ABA29156.1| putative lipoic acid synthase [Pisum sativum] | Back alignment and taxonomy information |
|---|
Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust.
Identities = 317/375 (84%), Positives = 338/375 (90%)
Query: 1 MRSRFTLALARTLTSRTRPFSSSAQTPPTEPPTKFPQTLAGLRARLASESPALSDFIDLQ 60
M SRF + R SSS T T P++ Q LA LRARLA ESP+LSDFI L+
Sbjct: 2 MYSRFRTVAGNLNCAAKRLSSSSTTTTTTSAPSELQQNLAALRARLAMESPSLSDFISLK 61
Query: 61 SNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECW 120
S+++YSVEVGTKKKPLPKPKWMKESIPGG+KYVQIKKKLRELKLHTVCEEAKCPNLGECW
Sbjct: 62 SDNAYSVEVGTKKKPLPKPKWMKESIPGGEKYVQIKKKLRELKLHTVCEEAKCPNLGECW 121
Query: 121 SGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVIT 180
SGGETGTATATIMILGDTCTRGCRFCNVKTSR PPPPDPDEPTNVAEAIASWGLDYVVIT
Sbjct: 122 SGGETGTATATIMILGDTCTRGCRFCNVKTSRTPPPPDPDEPTNVAEAIASWGLDYVVIT 181
Query: 181 SVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNI 240
SVDRDDL DQGSGHF +TV+KLK LKP+ LIEALVPDFRGN CV +V+KSGL+VFAHNI
Sbjct: 182 SVDRDDLPDQGSGHFTETVQKLKALKPSTLIEALVPDFRGNAECVEKVSKSGLDVFAHNI 241
Query: 241 ETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVR 300
ETVEELQSAVRDHRANFKQSLDVLMMAK+Y PAGTLTKTSIMLGCGETPDQ+V TMEKVR
Sbjct: 242 ETVEELQSAVRDHRANFKQSLDVLMMAKEYAPAGTLTKTSIMLGCGETPDQIVKTMEKVR 301
Query: 301 AAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKAGE 360
AAGVDVMTFGQYMRPSKRHMPVSEYITPEAFE+Y+ LGMEMGFRYVASGPMVRSSYKAGE
Sbjct: 302 AAGVDVMTFGQYMRPSKRHMPVSEYITPEAFEKYQTLGMEMGFRYVASGPMVRSSYKAGE 361
Query: 361 FYIKSMIESDRAATS 375
FYIKSMI+SDRAA+S
Sbjct: 362 FYIKSMIDSDRAASS 376
|
Source: Pisum sativum Species: Pisum sativum Genus: Pisum Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359496821|ref|XP_002266132.2| PREDICTED: LOW QUALITY PROTEIN: lipoyl synthase, mitochondrial [Vitis vinifera] gi|308191441|sp|A5CB81.1|LIAS_VITVI RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic acid synthase; Flags: Precursor gi|147825263|emb|CAN73265.1| hypothetical protein VITISV_021769 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 605 bits (1560), Expect = e-170, Method: Compositional matrix adjust.
Identities = 299/347 (86%), Positives = 322/347 (92%), Gaps = 2/347 (0%)
Query: 26 TPPTEPPTKFPQTLAGLRARLASESPALSDFIDLQSNSSYSVEVGTKKKPLPKPKWMKES 85
+PPT P + PQTLA LR RLA ESP+LSDF+ LQ++ YSVEVGTKKKPL KPKWMKES
Sbjct: 35 SPPTNP--EPPQTLASLRHRLAVESPSLSDFVRLQTSDDYSVEVGTKKKPLSKPKWMKES 92
Query: 86 IPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRF 145
IPGG KY QIKKKLR+L LHTVCEEA+CPN+GECWSGGETGTATATIMILGDTCTRGCRF
Sbjct: 93 IPGGAKYTQIKKKLRQLNLHTVCEEARCPNMGECWSGGETGTATATIMILGDTCTRGCRF 152
Query: 146 CNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205
CNVKTSR PPPPDPDEP+ VAEAIASWGLDYVVITSVDRDDL DQGSGHFA+TV+KLK L
Sbjct: 153 CNVKTSRTPPPPDPDEPSKVAEAIASWGLDYVVITSVDRDDLPDQGSGHFAETVQKLKIL 212
Query: 206 KPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLM 265
KPNMLIEALVPDFRG+ GCV +V+KSGL+VFAHNIETVEELQSAVRDHRANFKQSL+VL
Sbjct: 213 KPNMLIEALVPDFRGDPGCVEKVSKSGLDVFAHNIETVEELQSAVRDHRANFKQSLEVLK 272
Query: 266 MAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEY 325
+AK+Y AGTLTKTSIMLGCGETPDQVV TMEKVRAAGVDVMTFGQYMRPSKRHMPVSEY
Sbjct: 273 LAKEYADAGTLTKTSIMLGCGETPDQVVRTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEY 332
Query: 326 ITPEAFERYRALGMEMGFRYVASGPMVRSSYKAGEFYIKSMIESDRA 372
ITPEAFE+YR LGM+MGFRYVASGPMVRSSYKAGEFYIKSMI++DRA
Sbjct: 333 ITPEAFEKYRILGMDMGFRYVASGPMVRSSYKAGEFYIKSMIDADRA 379
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 376 | ||||||
| TAIR|locus:2051384 | 374 | LIP1 "lipoic acid synthase 1" | 0.933 | 0.938 | 0.794 | 4.3e-148 | |
| ZFIN|ZDB-GENE-040426-1528 | 399 | lias "lipoic acid synthetase" | 0.917 | 0.864 | 0.528 | 1.6e-93 | |
| UNIPROTKB|E2R257 | 373 | LIAS "Lipoyl synthase, mitocho | 0.890 | 0.898 | 0.535 | 4.3e-93 | |
| FB|FBgn0029158 | 377 | Las "Lipoic acid synthase" [Dr | 0.765 | 0.763 | 0.588 | 7e-93 | |
| MGI|MGI:1934604 | 373 | Lias "lipoic acid synthetase" | 0.861 | 0.868 | 0.549 | 7e-93 | |
| RGD|1307270 | 373 | Lias "lipoic acid synthetase" | 0.882 | 0.890 | 0.536 | 7e-93 | |
| UNIPROTKB|O43766 | 372 | LIAS "Lipoyl synthase, mitocho | 0.890 | 0.900 | 0.532 | 1.1e-92 | |
| UNIPROTKB|I3LGA8 | 372 | LIAS "Lipoyl synthase, mitocho | 0.890 | 0.900 | 0.532 | 3e-92 | |
| UNIPROTKB|F1NEN8 | 339 | LIAS "Uncharacterized protein" | 0.859 | 0.952 | 0.536 | 5e-92 | |
| UNIPROTKB|Q5BIP7 | 372 | LIAS "Lipoyl synthase, mitocho | 0.760 | 0.768 | 0.599 | 6.3e-92 |
| TAIR|locus:2051384 LIP1 "lipoic acid synthase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1446 (514.1 bits), Expect = 4.3e-148, P = 4.3e-148
Identities = 283/356 (79%), Positives = 309/356 (86%)
Query: 21 SSSAQTPPTEPPTKFPQTLAGLRARLASESPALSDFIDLQSNSSYSVEVGTXXXXXXXXX 80
SSSA TP T T+ P++L LRARLA+ESP+L+DFI +YSVEVGT
Sbjct: 21 SSSAVTPVTV--TQSPKSLEALRARLANESPSLTDFIH---GDTYSVEVGTKKKPLPKPK 75
Query: 81 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCT 140
WMKESIPGG++YVQIKKKLR+LKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCT
Sbjct: 76 WMKESIPGGERYVQIKKKLRDLKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCT 135
Query: 141 RGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVR 200
RGCRFCNVKTSR NVAEAIASWG+DYVVITSVDRDDL DQGSGHFA+TV+
Sbjct: 136 RGCRFCNVKTSRTPPPPDPNEPNNVAEAIASWGVDYVVITSVDRDDLPDQGSGHFAETVQ 195
Query: 201 KLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQS 260
+LK LKP MLIEALVPDFRG+ GCV +V+KSGL+V AHNIETVEELQS VRDHRANFKQS
Sbjct: 196 RLKFLKPEMLIEALVPDFRGDGGCVEKVSKSGLDVLAHNIETVEELQSFVRDHRANFKQS 255
Query: 261 LDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHM 320
LDVL MAK+Y PAGTLTKTS+MLGCGETPDQVV TMEKVRAAGVDVMTFGQYMRPSKRHM
Sbjct: 256 LDVLRMAKEYAPAGTLTKTSVMLGCGETPDQVVKTMEKVRAAGVDVMTFGQYMRPSKRHM 315
Query: 321 PVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKAGEFYIKSMIESDRAATSS 376
PV+EY+TP+AFERYR LGMEMGFRYVASGPMVRSSYKAGE+YIKSMIE+DR A+ S
Sbjct: 316 PVAEYVTPDAFERYRLLGMEMGFRYVASGPMVRSSYKAGEYYIKSMIEADRVASPS 371
|
|
| ZFIN|ZDB-GENE-040426-1528 lias "lipoic acid synthetase" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 931 (332.8 bits), Expect = 1.6e-93, P = 1.6e-93
Identities = 187/354 (52%), Positives = 239/354 (67%)
Query: 21 SSSAQTPPTEPPTKFPQTLAGLRARLASESPALSDFI--DLQSNSSYSVEVGTXXXXXXX 78
S++A T + P+ P T + L + L DFI +L S + G
Sbjct: 37 STAASTSSSSSPS--PSTHNDRKKDLREDGLNLQDFISGELSEKSKWEEYRGNLKREKGE 94
Query: 79 XX----WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMI 134
W+K IP G Y ++K LREL LHTVCEEA+CPN+GECW GGE TATATIM+
Sbjct: 95 RLRLPPWLKTEIPIGKNYNKLKNTLRELNLHTVCEEARCPNIGECWGGGEYATATATIML 154
Query: 135 LGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGH 194
+GDTCTRGCRFC+VKT+R N A+AIA+WGLDYVV+TSVDRDD+ D G+ H
Sbjct: 155 MGDTCTRGCRFCSVKTARRPPPLDPDEPYNTAKAIAAWGLDYVVLTSVDRDDIPDGGAEH 214
Query: 195 FAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHR 254
FA+TV +KE +L+E L PDFRG+ V ++A SGL+V+AHN+ETV ELQ VRD R
Sbjct: 215 FAKTVSNIKERNSKILVECLTPDFRGDLAAVEKIALSGLDVYAHNVETVRELQRHVRDPR 274
Query: 255 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMR 314
ANF QSL VL AK V + LTKTSIMLG GET Q+ +T+ ++R +GVD +T GQYM+
Sbjct: 275 ANFDQSLSVLRHAKK-VKSSVLTKTSIMLGLGETDAQIQATLTELRDSGVDCLTLGQYMQ 333
Query: 315 PSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKAGEFYIKSMIE 368
P+KRH+ V EY+TPE F + +G EMGF Y ASGP+VRSSYKAGEF++K+++E
Sbjct: 334 PTKRHLKVEEYVTPEKFAFWEKVGQEMGFIYTASGPLVRSSYKAGEFFLKNLLE 387
|
|
| UNIPROTKB|E2R257 LIAS "Lipoyl synthase, mitochondrial" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 927 (331.4 bits), Expect = 4.3e-93, P = 4.3e-93
Identities = 183/342 (53%), Positives = 230/342 (67%)
Query: 32 PTKFPQTLAGLRARLASESPALSDFI--DLQSNSSYSVEVGTXXXXXXXXX----WMKES 85
P + +L + P L DF+ DL S + G W+K
Sbjct: 24 PFRTVSSLPDKKKEFLQNGPDLQDFVSGDLADKSKWDEYKGNLKRQKGERLRLPPWLKTE 83
Query: 86 IPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRF 145
IP G Y ++K LR L LHTVCEEA+CPN+GECW GGE TATATIM++GDTCTRGCRF
Sbjct: 84 IPMGKNYNKLKNTLRNLNLHTVCEEARCPNIGECWGGGEYATATATIMLMGDTCTRGCRF 143
Query: 146 CNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205
C+VKT+R N A+AIA WGLDYVV+TSVDRDD+ D G+ HFA+TV LKE
Sbjct: 144 CSVKTARNPPPLDASEPYNTAKAIAEWGLDYVVLTSVDRDDMPDGGAEHFAKTVSYLKER 203
Query: 206 KPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLM 265
P +L+E L PDFRG+ + +VA SGL+V+AHNIETV ELQ VRD RANF QSL VL
Sbjct: 204 NPKILVECLTPDFRGDLKAIEKVALSGLDVYAHNIETVPELQRKVRDPRANFSQSLRVLK 263
Query: 266 MAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEY 325
AK+ P ++KTSIMLG GE +QV +TM+ +R A VD +T GQYM+P+KRH+ V EY
Sbjct: 264 HAKEVRP-DVISKTSIMLGLGENDEQVYATMKALREADVDCLTLGQYMQPTKRHLKVEEY 322
Query: 326 ITPEAFERYRALGMEMGFRYVASGPMVRSSYKAGEFYIKSMI 367
ITPE F+ + +G E+GF Y ASGP+VRSSYKAGEF++K+++
Sbjct: 323 ITPEKFKYWEKVGNELGFHYTASGPLVRSSYKAGEFFLKNLV 364
|
|
| FB|FBgn0029158 Las "Lipoic acid synthase" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 925 (330.7 bits), Expect = 7.0e-93, P = 7.0e-93
Identities = 170/289 (58%), Positives = 221/289 (76%)
Query: 81 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCT 140
W+K +IP G Y +IK ++RELKL TVCEEA+CPN+GECW GGE GT TATIM++GDTCT
Sbjct: 76 WLKTTIPVGKNYAKIKAQMRELKLSTVCEEARCPNIGECWGGGEHGTQTATIMLMGDTCT 135
Query: 141 RGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVR 200
RGCRFC+VKT+R N A AIASWGLDY+V+TSVDRDDL D GS H A+TVR
Sbjct: 136 RGCRFCSVKTARKPPPLDVNEPVNTATAIASWGLDYIVLTSVDRDDLPDGGSEHIAETVR 195
Query: 201 KLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQS 260
++K N+ +E LVPDFRGN CV+ +A SGL+V+AHNIETVE+L VRD RA+++Q+
Sbjct: 196 EIKARNSNIFVECLVPDFRGNLECVKTIANSGLDVYAHNIETVEKLTPYVRDRRAHYRQT 255
Query: 261 LDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHM 320
L VL AK + P +TK+SIMLG GET +++ +T++ +R AGVD +T GQYM+P+ +H+
Sbjct: 256 LQVLTEAKRFNP-NLITKSSIMLGLGETDEEIENTLKDLREAGVDCVTLGQYMQPTNKHL 314
Query: 321 PVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKAGEFYIKSMIES 369
V EY+TPE F+ + G E+GF Y ASGP+VRSSYKAGEF+I S++E+
Sbjct: 315 KVIEYVTPEKFKHWEERGNELGFLYTASGPLVRSSYKAGEFFITSILEN 363
|
|
| MGI|MGI:1934604 Lias "lipoic acid synthetase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 925 (330.7 bits), Expect = 7.0e-93, P = 7.0e-93
Identities = 182/331 (54%), Positives = 230/331 (69%)
Query: 51 PALSDFI--DLQSNSSYSVEVGTXXXXXXXXX----WMKESIPGGDKYVQIKKKLRELKL 104
P L DF+ DL S++ G W+K IP G Y ++K LR L L
Sbjct: 42 PDLQDFVSGDLADKSTWDEYKGNLKRQKGERLRLPPWLKTKIPMGKNYNKLKNTLRNLSL 101
Query: 105 HTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTN 164
HTVCEEA+CPN+GECW GGE TATATIM++GDTCTRGCRFC+VKT+R N
Sbjct: 102 HTVCEEARCPNIGECWGGGEYATATATIMLMGDTCTRGCRFCSVKTARNPPPLDANEPDN 161
Query: 165 VAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGC 224
A+AIA WGLDYVV+TSVDRDD+AD G+ H A+TV LKE P +L+E L PDFRG+
Sbjct: 162 TAKAIAEWGLDYVVLTSVDRDDVADGGAEHIAKTVSCLKERNPKILVECLTPDFRGDLRA 221
Query: 225 VREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG 284
V +VA SGL+V+AHN+ETV ELQ VRD RANF QSL VL AK+ P ++KTSIMLG
Sbjct: 222 VEKVALSGLDVYAHNVETVPELQRKVRDPRANFDQSLRVLRHAKEVQP-DVVSKTSIMLG 280
Query: 285 CGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFR 344
GET +QV +T++ +RAA VD +T GQYM+P+KRH+ V EY+TPE F+ + +G E+GF
Sbjct: 281 LGETDEQVYATLKALRAADVDCLTLGQYMQPTKRHLKVEEYVTPEKFKYWEKVGNELGFL 340
Query: 345 YVASGPMVRSSYKAGEFYIKSMIESDRAATS 375
Y ASGP+VRSSYKAGEF++K+++ + S
Sbjct: 341 YTASGPLVRSSYKAGEFFLKNLVARRKTKAS 371
|
|
| RGD|1307270 Lias "lipoic acid synthetase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 925 (330.7 bits), Expect = 7.0e-93, P = 7.0e-93
Identities = 182/339 (53%), Positives = 230/339 (67%)
Query: 43 RARLASESPALSDFI--DLQSNSSYSVEVGTXXXXXXXXX----WMKESIPGGDKYVQIK 96
+ + P L DF+ DL S++ G W+K IP G Y ++K
Sbjct: 34 KKKFLHNGPDLQDFVSGDLADKSTWDDYKGNLKRQKGERLRLPPWLKTKIPMGKNYNKLK 93
Query: 97 KKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXX 156
LR L LHTVCEEA+CPN+GECW GGE TATATIM++GDTCTRGCRFC+VKT+R
Sbjct: 94 NTLRNLNLHTVCEEARCPNIGECWGGGEYATATATIMLMGDTCTRGCRFCSVKTARNPPP 153
Query: 157 XXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVP 216
N A AIA WGLDYVV+TSVDRDD+ D G+ H A+TV LKE P +L+E L P
Sbjct: 154 LDPSEPDNTARAIAEWGLDYVVLTSVDRDDVVDGGAEHIAKTVSCLKERNPKILVECLTP 213
Query: 217 DFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL 276
DFRG+ V +VA SGL+V+AHN+ETV ELQ VRD RANF QSL VL AK+ P +
Sbjct: 214 DFRGDLRAVEKVALSGLDVYAHNVETVPELQRKVRDPRANFDQSLRVLKHAKEVQP-DVV 272
Query: 277 TKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRA 336
+KTSIMLG GET +QV +TM+ +RAA VD +T GQYM+P+KRH+ V EY+TPE F+ +
Sbjct: 273 SKTSIMLGLGETDEQVYATMKALRAADVDCLTLGQYMQPTKRHLKVEEYVTPEKFKYWEE 332
Query: 337 LGMEMGFRYVASGPMVRSSYKAGEFYIKSMIESDRAATS 375
+G E+GF Y ASGP+VRSSYKAGEF++K+++ + S
Sbjct: 333 VGNELGFHYTASGPLVRSSYKAGEFFLKNLVAKRKTKVS 371
|
|
| UNIPROTKB|O43766 LIAS "Lipoyl synthase, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 923 (330.0 bits), Expect = 1.1e-92, P = 1.1e-92
Identities = 182/342 (53%), Positives = 231/342 (67%)
Query: 32 PTKFPQTLAGLRARLASESPALSDFI--DLQSNSSYSVEVGTXXXXXXXXX----WMKES 85
P + +L + L P L DF+ DL S++ G W+K
Sbjct: 24 PVRPLSSLPDKKKELLQNGPDLQDFVSGDLADRSTWDEYKGNLKRQKGERLRLPPWLKTE 83
Query: 86 IPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRF 145
IP G Y ++K LR L LHTVCEEA+CPN+GECW GGE TATATIM++GDTCTRGCRF
Sbjct: 84 IPMGKNYNKLKNTLRNLNLHTVCEEARCPNIGECWGGGEYATATATIMLMGDTCTRGCRF 143
Query: 146 CNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205
C+VKT+R N A+AIA WGLDYVV+TSVDRDD+ D G+ H A+TV LKE
Sbjct: 144 CSVKTARNPPPLDASEPYNTAKAIAEWGLDYVVLTSVDRDDMPDGGAEHIAKTVSYLKER 203
Query: 206 KPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLM 265
P +L+E L PDFRG+ + +VA SGL+V+AHN+ETV ELQS VRD RANF QSL VL
Sbjct: 204 NPKILVECLTPDFRGDLKAIEKVALSGLDVYAHNVETVPELQSKVRDPRANFDQSLRVLK 263
Query: 266 MAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEY 325
AK P ++KTSIMLG GE +QV +TM+ +R A VD +T GQYM+P++RH+ V EY
Sbjct: 264 HAKKVQP-DVISKTSIMLGLGENDEQVYATMKALREADVDCLTLGQYMQPTRRHLKVEEY 322
Query: 326 ITPEAFERYRALGMEMGFRYVASGPMVRSSYKAGEFYIKSMI 367
ITPE F+ + +G E+GF Y ASGP+VRSSYKAGEF++K+++
Sbjct: 323 ITPEKFKYWEKVGNELGFHYTASGPLVRSSYKAGEFFLKNLV 364
|
|
| UNIPROTKB|I3LGA8 LIAS "Lipoyl synthase, mitochondrial" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 919 (328.6 bits), Expect = 3.0e-92, P = 3.0e-92
Identities = 182/342 (53%), Positives = 230/342 (67%)
Query: 32 PTKFPQTLAGLRARLASESPALSDFI--DLQSNSSYSVEVGTXXXXXXXXX----WMKES 85
P + +L + P L DF+ DL S++ G W+K
Sbjct: 24 PVRAISSLPDKKKEFLQNGPDLQDFLSGDLADKSTWDDYKGNLKRQKGERLRLPPWLKTE 83
Query: 86 IPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRF 145
IP G Y ++K LR L LHTVCEEA+CPN+GECW GGE TATATIM++GDTCTRGCRF
Sbjct: 84 IPMGKNYNKLKNTLRNLNLHTVCEEARCPNIGECWGGGEYATATATIMLMGDTCTRGCRF 143
Query: 146 CNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205
C+VKT+R N A+AIA WGLDYVV+TSVDRDD+ D G+ HFA+TV LKE
Sbjct: 144 CSVKTARNPPPLDANEPYNTAKAIAEWGLDYVVLTSVDRDDMPDGGAEHFAKTVSYLKER 203
Query: 206 KPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLM 265
P +L+E L PDFRG+ V +VA SGL+V+AHN+ETV ELQ VRD RA F QSL VL
Sbjct: 204 NPKILVECLTPDFRGDLKAVEKVAVSGLDVYAHNVETVPELQRKVRDPRAGFDQSLRVLK 263
Query: 266 MAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEY 325
AK+ P ++KTSIMLG GE +QV +TM+ +R A VD +T GQYM+P+KRH+ V EY
Sbjct: 264 HAKEVRP-DVISKTSIMLGLGENDEQVYATMKALREADVDCLTLGQYMQPTKRHLKVEEY 322
Query: 326 ITPEAFERYRALGMEMGFRYVASGPMVRSSYKAGEFYIKSMI 367
ITPE F+ + +G E+GF Y ASGP+VRSSYKAGEF++K+++
Sbjct: 323 ITPEKFKYWEKVGNELGFHYTASGPLVRSSYKAGEFFLKNLV 364
|
|
| UNIPROTKB|F1NEN8 LIAS "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 917 (327.9 bits), Expect = 5.0e-92, P = 5.0e-92
Identities = 177/330 (53%), Positives = 231/330 (70%)
Query: 45 RLASESPALSDFI--DLQSNSSYSVEVGTXXXXXXXXX----WMKESIPGGDKYVQIKKK 98
++ P L DF+ DL S ++ G W+K IP G Y ++K
Sbjct: 4 KILQTGPDLEDFVSGDLADKSVWAEYKGNLKRQKGERLRLPPWLKTEIPMGKNYNKLKNT 63
Query: 99 LRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXX 158
LR L LHTVCEEA+CPN+GECW GGE TATATIM++GDTCTRGCRFC+VKT++
Sbjct: 64 LRSLNLHTVCEEARCPNIGECWGGGEYATATATIMLMGDTCTRGCRFCSVKTAKNPPPLD 123
Query: 159 XXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF 218
N A+AIA WGLDYVV+TSVDRDD+ D G+ HFA+TV LKE +++E L PDF
Sbjct: 124 PEEPYNTAKAIAEWGLDYVVLTSVDRDDMPDGGAEHFAKTVSHLKERNSKIVVECLTPDF 183
Query: 219 RGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTK 278
RG+ V +VA SGL+V+AHN+ETV ELQ VRD RANF+QS+ VL AK P ++K
Sbjct: 184 RGDLNAVEKVALSGLDVYAHNVETVPELQRKVRDPRANFEQSVRVLKHAKAVQPR-VISK 242
Query: 279 TSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALG 338
TS+MLG GET +QV++TM+ +R AGVD +T GQYM+P+KRH+ V EY+TPE F+ + +G
Sbjct: 243 TSLMLGLGETDEQVLATMKLLREAGVDCLTLGQYMQPTKRHLKVEEYVTPEKFKYWEKVG 302
Query: 339 MEMGFRYVASGPMVRSSYKAGEFYIKSMIE 368
++GF Y ASGP+VRSSYKAGEF++K+++E
Sbjct: 303 NDLGFHYTASGPLVRSSYKAGEFFLKNLVE 332
|
|
| UNIPROTKB|Q5BIP7 LIAS "Lipoyl synthase, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 916 (327.5 bits), Expect = 6.3e-92, P = 6.3e-92
Identities = 172/287 (59%), Positives = 215/287 (74%)
Query: 81 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCT 140
W+K IP G Y ++K LR L LHTVCEEA+CPN+GECW GGE TATATIM++GDTCT
Sbjct: 79 WLKTEIPMGKNYNKLKNTLRNLNLHTVCEEARCPNIGECWGGGEYATATATIMLMGDTCT 138
Query: 141 RGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVR 200
RGCRFC+VKT+R N A+AIA WGLDYVV+TSVDRDD+ D G+ HFA+TV
Sbjct: 139 RGCRFCSVKTARNPPPLDANEPYNTAKAIAEWGLDYVVLTSVDRDDMPDGGAEHFAKTVS 198
Query: 201 KLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQS 260
LKE P +L+E L PDFRG+ + +VA SGL+V+AHN+ETV ELQ VRD RANF QS
Sbjct: 199 YLKERNPKILVECLTPDFRGDLKAIEKVALSGLDVYAHNVETVPELQRKVRDPRANFDQS 258
Query: 261 LDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHM 320
L VL AK+ P ++KTSIMLG GE +QV +TM+ +R A VD +T GQYM+P+KRH+
Sbjct: 259 LRVLKHAKEVRP-DVISKTSIMLGLGENDEQVYATMKALREADVDCLTLGQYMQPTKRHL 317
Query: 321 PVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKAGEFYIKSMI 367
V EYITPE F+ + +G E+GF Y ASGP+VRSSYKAGEF++K+++
Sbjct: 318 KVEEYITPEKFKYWEKVGNELGFHYTASGPLVRSSYKAGEFFLKNLV 364
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q16W22 | LIAS_AEDAE | 2, ., 8, ., 1, ., 8 | 0.5701 | 0.8670 | 0.8295 | N/A | no |
| Q5AQE4 | LIPA_EMENI | 2, ., 8, ., 1, ., 8 | 0.5476 | 0.8563 | 0.7796 | yes | no |
| B6HFQ1 | LIPA_PENCW | 2, ., 8, ., 1, ., 8 | 0.5270 | 0.9228 | 0.8341 | yes | no |
| B3M996 | LIAS_DROAN | 2, ., 8, ., 1, ., 8 | 0.5507 | 0.8696 | 0.8696 | N/A | no |
| A2XU53 | LIAS_ORYSI | 2, ., 8, ., 1, ., 8 | 0.8284 | 0.8803 | 0.8664 | N/A | no |
| B9RW49 | LIAS_RICCO | 2, ., 8, ., 1, ., 8 | 0.8571 | 0.8776 | 0.9482 | N/A | no |
| C4JE77 | LIPA_UNCRE | 2, ., 8, ., 1, ., 8 | 0.5142 | 0.9707 | 0.8752 | N/A | no |
| Q5XIH4 | LIAS_RAT | 2, ., 8, ., 1, ., 8 | 0.5663 | 0.8829 | 0.8900 | yes | no |
| C7Z527 | LIPA_NECH7 | 2, ., 8, ., 1, ., 8 | 0.5171 | 0.9627 | 0.8786 | N/A | no |
| A5CB81 | LIAS_VITVI | 2, ., 8, ., 1, ., 8 | 0.8616 | 0.9175 | 0.8778 | yes | no |
| B8A031 | LIAS_MAIZE | 2, ., 8, ., 1, ., 8 | 0.8040 | 0.8909 | 0.8746 | N/A | no |
| B4IUG3 | LIAS1_DROYA | 2, ., 8, ., 1, ., 8 | 0.5601 | 0.8803 | 0.8733 | N/A | no |
| B9H5L9 | LIAS_POPTR | 2, ., 8, ., 1, ., 8 | 0.8552 | 0.9973 | 0.9740 | yes | no |
| B4IAA7 | LIAS_DROSE | 2, ., 8, ., 1, ., 8 | 0.5542 | 0.8803 | 0.8779 | N/A | no |
| B4MXR6 | LIAS_DROWI | 2, ., 8, ., 1, ., 8 | 0.5545 | 0.875 | 0.8844 | N/A | no |
| Q2LYK1 | LIAS_DROPS | 2, ., 8, ., 1, ., 8 | 0.5446 | 0.8962 | 0.9010 | yes | no |
| C5PIN8 | LIPA_COCP7 | 2, ., 8, ., 1, ., 8 | 0.5294 | 0.8989 | 0.8066 | N/A | no |
| Q3LSN4 | LIAS1_PEA | 2, ., 8, ., 1, ., 8 | 0.8453 | 0.9973 | 0.9973 | N/A | no |
| A9NNH7 | LIAS_PICSI | 2, ., 8, ., 1, ., 8 | 0.7427 | 0.9707 | 0.9455 | N/A | no |
| Q9ZWT1 | LIAS_ARATH | 2, ., 8, ., 1, ., 8 | 0.8138 | 0.9867 | 0.9919 | yes | no |
| Q99M04 | LIAS_MOUSE | 2, ., 8, ., 1, ., 8 | 0.5882 | 0.8404 | 0.8471 | yes | no |
| A4RZ86 | LIAS_OSTLU | 2, ., 8, ., 1, ., 8 | 0.6065 | 0.8776 | 0.8270 | yes | no |
| Q5BIP7 | LIAS_BOVIN | 2, ., 8, ., 1, ., 8 | 0.5820 | 0.8404 | 0.8494 | yes | no |
| B7FRU7 | LIPA1_PHATC | 2, ., 8, ., 1, ., 8 | 0.5386 | 0.9255 | 0.8678 | yes | no |
| Q2U4H2 | LIPA_ASPOR | 2, ., 8, ., 1, ., 8 | 0.5088 | 0.9920 | 0.8987 | yes | no |
| Q7XRF1 | LIAS_ORYSJ | 2, ., 8, ., 1, ., 8 | 0.8254 | 0.8803 | 0.8664 | yes | no |
| C5Y9R0 | LIAS_SORBI | 2, ., 8, ., 1, ., 8 | 0.8093 | 0.8882 | 0.8652 | N/A | no |
| B3NIL9 | LIAS_DROER | 2, ., 8, ., 1, ., 8 | 0.5510 | 0.8856 | 0.8786 | N/A | no |
| Q6PHG4 | LIAS_DANRE | 2, ., 8, ., 1, ., 8 | 0.5931 | 0.8377 | 0.7894 | yes | no |
| B6K4J2 | LIPA_SCHJY | 2, ., 8, ., 1, ., 8 | 0.5643 | 0.8670 | 0.8647 | N/A | no |
| B0WAU6 | LIAS_CULQU | 2, ., 8, ., 1, ., 8 | 0.5697 | 0.8723 | 0.8631 | N/A | no |
| Q4WWP1 | LIPA_ASPFU | 2, ., 8, ., 1, ., 8 | 0.5462 | 0.8590 | 0.7801 | yes | no |
| A1CJC4 | LIPA_ASPCL | 2, ., 8, ., 1, ., 8 | 0.5298 | 0.9175 | 0.8313 | N/A | no |
| D0NP70 | LIPA_PHYIT | 2, ., 8, ., 1, ., 8 | 0.5571 | 0.8776 | 0.8616 | N/A | no |
| Q7JQW6 | LIAS_DROME | 2, ., 8, ., 1, ., 8 | 0.5316 | 0.9308 | 0.9283 | yes | no |
| A8N1T1 | LIPA_COPC7 | 2, ., 8, ., 1, ., 8 | 0.5744 | 0.8351 | 0.8051 | N/A | no |
| B4J3F3 | LIAS_DROGR | 2, ., 8, ., 1, ., 8 | 0.5565 | 0.8909 | 0.9203 | N/A | no |
| C5DGZ5 | LIPA_LACTC | 2, ., 8, ., 1, ., 8 | 0.5065 | 0.9388 | 0.9514 | yes | no |
| B4KYY0 | LIAS_DROMO | 2, ., 8, ., 1, ., 8 | 0.5449 | 0.8909 | 0.9203 | N/A | no |
| O43766 | LIAS_HUMAN | 2, ., 8, ., 1, ., 8 | 0.5464 | 0.9255 | 0.9354 | yes | no |
| Q3LSN5 | LIAS2_PEA | 2, ., 8, ., 1, ., 8 | 0.8453 | 0.9973 | 0.9973 | N/A | no |
| Q6GQ48 | LIAS_XENLA | 2, ., 8, ., 1, ., 8 | 0.5830 | 0.8936 | 0.9032 | N/A | no |
| B4PF83 | LIAS2_DROYA | 2, ., 8, ., 1, ., 8 | 0.5601 | 0.8803 | 0.8733 | N/A | no |
| B8NUL8 | LIPA_ASPFN | 2, ., 8, ., 1, ., 8 | 0.5127 | 0.9840 | 0.8915 | N/A | no |
| C3Y3G4 | LIAS_BRAFL | 2, ., 8, ., 1, ., 8 | 0.5709 | 0.8590 | 0.8590 | yes | no |
| C5FZJ2 | LIPA_ARTOC | 2, ., 8, ., 1, ., 8 | 0.5198 | 0.9388 | 0.8609 | N/A | no |
| B7FM45 | LIAS_MEDTR | 2, ., 8, ., 1, ., 8 | 0.8404 | 0.9946 | 0.9894 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 2.8.1.8 | 0.994 |
| 3rd Layer | 2.8.1 | 0.998 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 376 | |||
| PLN02428 | 349 | PLN02428, PLN02428, lipoic acid synthase | 0.0 | |
| PRK05481 | 289 | PRK05481, PRK05481, lipoyl synthase; Provisional | 1e-166 | |
| PTZ00413 | 398 | PTZ00413, PTZ00413, lipoate synthase; Provisional | 1e-158 | |
| COG0320 | 306 | COG0320, LipA, Lipoate synthase [Coenzyme metaboli | 1e-156 | |
| PRK12928 | 290 | PRK12928, PRK12928, lipoyl synthase; Provisional | 1e-132 | |
| TIGR00510 | 302 | TIGR00510, lipA, lipoate synthase | 1e-131 | |
| pfam04055 | 165 | pfam04055, Radical_SAM, Radical SAM superfamily | 1e-18 | |
| smart00729 | 216 | smart00729, Elp3, Elongator protein 3, MiaB family | 7e-17 | |
| cd01335 | 204 | cd01335, Radical_SAM, Radical SAM superfamily | 8e-08 | |
| COG1060 | 370 | COG1060, ThiH, Thiamine biosynthesis enzyme ThiH a | 8e-05 | |
| COG0502 | 335 | COG0502, BioB, Biotin synthase and related enzymes | 0.001 |
| >gnl|CDD|215236 PLN02428, PLN02428, lipoic acid synthase | Back alignment and domain information |
|---|
Score = 666 bits (1719), Expect = 0.0
Identities = 252/354 (71%), Positives = 290/354 (81%), Gaps = 6/354 (1%)
Query: 23 SAQTPPTEPPTKFPQTLAGLRARLASESPALSDFIDLQSNSSYSVEVGTKKKPLPKPKWM 82
T T P T PQTLA LRARLASESP+L DF+ L + + KPLPKPKW+
Sbjct: 1 VTSTSTTAPQT--PQTLAALRARLASESPSLGDFVSLGPYTLG---SYGRDKPLPKPKWL 55
Query: 83 KESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRG 142
++ PGG+KY +IK+KLRELKL+TVCEEA+CPN+GECW+GG TGTATATIMILGDTCTRG
Sbjct: 56 RQRAPGGEKYTEIKEKLRELKLNTVCEEAQCPNIGECWNGGGTGTATATIMILGDTCTRG 115
Query: 143 CRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKL 202
CRFC VKTSR PPPPDPDEP NVAEAIASWG+DYVV+TSVDRDDL D GSGHFA+TVR+L
Sbjct: 116 CRFCAVKTSRTPPPPDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSGHFAETVRRL 175
Query: 203 KELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLD 262
K+LKP +L+EALVPDFRG+ G V VA SGL+VFAHNIETVE LQ VRD RA +KQSLD
Sbjct: 176 KQLKPEILVEALVPDFRGDLGAVETVATSGLDVFAHNIETVERLQRIVRDPRAGYKQSLD 235
Query: 263 VLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPV 322
VL AK+ P G LTKTSIMLG GET ++VV TME +RAAGVDV+TFGQY+RP+KRH+PV
Sbjct: 236 VLKHAKESKP-GLLTKTSIMLGLGETDEEVVQTMEDLRAAGVDVVTFGQYLRPTKRHLPV 294
Query: 323 SEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKAGEFYIKSMIESDRAATSS 376
EY+TPE FE +R G EMGFRYVASGP+VRSSYKAGEF+IKSMI DRA ++
Sbjct: 295 KEYVTPEKFEFWREYGEEMGFRYVASGPLVRSSYKAGEFFIKSMIREDRAKAAA 348
|
Length = 349 |
| >gnl|CDD|235493 PRK05481, PRK05481, lipoyl synthase; Provisional | Back alignment and domain information |
|---|
Score = 465 bits (1200), Expect = e-166
Identities = 156/291 (53%), Positives = 206/291 (70%), Gaps = 8/291 (2%)
Query: 72 KKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATAT 131
+K KP W++ +P G++Y +IKK LREL LHTVCEEA CPN+GECWS G TAT
Sbjct: 1 AEKVARKPDWLRVKLPTGEEYTEIKKLLRELGLHTVCEEASCPNIGECWSRG-----TAT 55
Query: 132 IMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQG 191
MILGD CTR C FC+V T R P P DPDEP VAEA+A GL YVVITSVDRDDL D G
Sbjct: 56 FMILGDICTRRCPFCDVATGR-PLPLDPDEPERVAEAVARMGLKYVVITSVDRDDLPDGG 114
Query: 192 SGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVR 251
+ HFA+T+R ++EL P IE L+PDFRG + V + +VF HN+ETV L VR
Sbjct: 115 AQHFAETIRAIRELNPGTTIEVLIPDFRGRMDALLTVLDARPDVFNHNLETVPRLYKRVR 174
Query: 252 DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 311
A++++SL++L AK+ P G TK+ +M+G GET ++V+ M+ +RAAGVD++T GQ
Sbjct: 175 -PGADYERSLELLKRAKELHP-GIPTKSGLMVGLGETDEEVLEVMDDLRAAGVDILTIGQ 232
Query: 312 YMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKAGEFY 362
Y++PS++H+PV Y+TPE F+ Y+ + +E+GF +VASGP+VRSSY A E
Sbjct: 233 YLQPSRKHLPVERYVTPEEFDEYKEIALELGFLHVASGPLVRSSYHADEQA 283
|
Length = 289 |
| >gnl|CDD|240408 PTZ00413, PTZ00413, lipoate synthase; Provisional | Back alignment and domain information |
|---|
Score = 448 bits (1155), Expect = e-158
Identities = 186/388 (47%), Positives = 246/388 (63%), Gaps = 19/388 (4%)
Query: 2 RSRFTLALARTLTSRTRPFSS----SAQTPPTEPPTK--FPQTLAGLRARLASES---PA 52
F A AR +P S A PP +P K F + R RL S+ +
Sbjct: 9 LYSFFSAAARAKCGIGKPSESTKSAVADVPPKDPQVKQIFLERF---RERLNSDKTGKNS 65
Query: 53 LSDFIDLQSNSSYSVEV--GTKKKPLPKPKWMKESIPGG----DKYVQIKKKLRELKLHT 106
L F+DL S K+ P P W K +P G ++ +I++ +RE KLHT
Sbjct: 66 LEGFVDLPEGLKPSAASIGPIKRGEEPLPPWFKVKVPKGASRRPRFNRIRRSMREKKLHT 125
Query: 107 VCEEAKCPNLGECWSGG-ETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNV 165
VCEEAKCPN+GECW GG E GTATATIM++GD CTRGCRFC+VKTSR PPP DP+EP V
Sbjct: 126 VCEEAKCPNIGECWGGGDEEGTATATIMVMGDHCTRGCRFCSVKTSRKPPPLDPNEPEKV 185
Query: 166 AEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCV 225
A+A+A G+DY+V+T VDRDDL D G+ H A+ V +KE P +L+EALV DF G+ V
Sbjct: 186 AKAVAEMGVDYIVMTMVDRDDLPDGGASHVARCVELIKESNPELLLEALVGDFHGDLKSV 245
Query: 226 REVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 285
++A S L+V+AHNIE VE + VRD RA+++QSL VL K++ LTK+SIMLG
Sbjct: 246 EKLANSPLSVYAHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGL 305
Query: 286 GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345
GET ++V T+ +R AGV +T GQY++P+K + VS Y P+ FE + M+MGF Y
Sbjct: 306 GETEEEVRQTLRDLRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLY 365
Query: 346 VASGPMVRSSYKAGEFYIKSMIESDRAA 373
ASGP+VRSSY+AGE+YIK++++ R A
Sbjct: 366 CASGPLVRSSYRAGEYYIKNLVKQRRKA 393
|
Length = 398 |
| >gnl|CDD|223397 COG0320, LipA, Lipoate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 440 bits (1135), Expect = e-156
Identities = 156/303 (51%), Positives = 208/303 (68%), Gaps = 8/303 (2%)
Query: 66 SVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGET 125
V ++ L KP+W+K P G +Y +IK+ LR+ LHTVCEEA CPN+GECWS G
Sbjct: 12 VKNVRPNEELLRKPEWLKVKAPTGSRYQEIKEILRKNGLHTVCEEASCPNIGECWSRG-- 69
Query: 126 GTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRD 185
TAT MILGD CTR CRFC+VKT R P P DPDEP VAEA+ GL YVVITSVDRD
Sbjct: 70 ---TATFMILGDICTRRCRFCDVKTGR-PNPLDPDEPERVAEAVKDMGLKYVVITSVDRD 125
Query: 186 DLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEE 245
DL D G+ HFA+ +R ++EL P IE L PDFRGN+ + VA +G +VF HN+ETV
Sbjct: 126 DLPDGGAQHFAECIRAIRELNPQTTIEVLTPDFRGNDDALEIVADAGPDVFNHNVETVPR 185
Query: 246 LQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVD 305
L VR A +++SL +L AK+ P TK+ +M+G GET ++V+ M+ +R+AGVD
Sbjct: 186 LYPRVR-PGATYERSLSLLERAKELGPD-IPTKSGLMVGLGETDEEVIEVMDDLRSAGVD 243
Query: 306 VMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKAGEFYIKS 365
++T GQY++PS++H+PV Y+TPE F+ + EMGF +VASGP+VRSSY A E + ++
Sbjct: 244 ILTIGQYLQPSRKHLPVQRYVTPEEFDELEEVAEEMGFLHVASGPLVRSSYHADEQFAEA 303
Query: 366 MIE 368
++
Sbjct: 304 EVK 306
|
Length = 306 |
| >gnl|CDD|237261 PRK12928, PRK12928, lipoyl synthase; Provisional | Back alignment and domain information |
|---|
Score = 379 bits (976), Expect = e-132
Identities = 134/285 (47%), Positives = 181/285 (63%), Gaps = 9/285 (3%)
Query: 77 PKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILG 136
P+W++ I + +++ +++ +LHT+CEEA+CPN GEC++ G TAT +I+G
Sbjct: 13 RLPEWLRAPIGKASELETVQRLVKQRRLHTICEEARCPNRGECYAQG-----TATFLIMG 67
Query: 137 DTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFA 196
CTR C FC V R P P DPDEP VAEA+A+ GL YVV+TSV RDDL D G+ HF
Sbjct: 68 SICTRRCAFCQVDKGR-PMPLDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFV 126
Query: 197 QTVRKLKELKPNMLIEALVPDFRGNN-GCVREVAKSGLNVFAHNIETVEELQSAVRDHRA 255
T+ ++ P IE L PDF G + V + +VF HN+ETV LQ AVR A
Sbjct: 127 ATIAAIRARNPGTGIEVLTPDFWGGQRERLATVLAAKPDVFNHNLETVPRLQKAVR-RGA 185
Query: 256 NFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRP 315
++++SLD+L AK+ P TK+ +MLG GET D+V+ T+ +RA G D +T GQY+RP
Sbjct: 186 DYQRSLDLLARAKELAP-DIPTKSGLMLGLGETEDEVIETLRDLRAVGCDRLTIGQYLRP 244
Query: 316 SKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKAGE 360
S H+PV Y TPE FE + E+GF +V SGP+VRSSY AGE
Sbjct: 245 SLAHLPVQRYWTPEEFEALGQIARELGFSHVRSGPLVRSSYHAGE 289
|
Length = 290 |
| >gnl|CDD|233002 TIGR00510, lipA, lipoate synthase | Back alignment and domain information |
|---|
Score = 377 bits (969), Expect = e-131
Identities = 144/295 (48%), Positives = 192/295 (65%), Gaps = 7/295 (2%)
Query: 72 KKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATAT 131
K+ L KP+W+K +P G QIK ++ LHTVCEEA CPNL ECW+ G TAT
Sbjct: 11 KEILLRKPEWLKIKLPLGTVIAQIKNTMKNKGLHTVCEEASCPNLTECWNHG-----TAT 65
Query: 132 IMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQG 191
MILGD CTR C FC+V R P PPDP+EP +AE I GL YVVITSVDRDDL D G
Sbjct: 66 FMILGDICTRRCPFCDVAHGRNPLPPDPEEPAKLAETIKDMGLKYVVITSVDRDDLEDGG 125
Query: 192 SGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVR 251
+ H A+ + ++E PN+ IE LVPDFRGN + + + +V+ HN+ETVE L VR
Sbjct: 126 ASHLAECIEAIREKLPNIKIETLVPDFRGNIAALDILLDAPPDVYNHNLETVERLTPFVR 185
Query: 252 DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 311
A ++ SL +L AK+Y+P TK+ IM+G GET +++ T++ +R GV ++T GQ
Sbjct: 186 -PGATYRWSLKLLERAKEYLPN-LPTKSGIMVGLGETNEEIKQTLKDLRDHGVTMVTLGQ 243
Query: 312 YMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKAGEFYIKSM 366
Y+RPS+RH+PV Y++PE F+ YR++ +EMGF + A GP VRSSY A +
Sbjct: 244 YLRPSRRHLPVKRYVSPEEFDYYRSVALEMGFLHAACGPFVRSSYHADSLFAAGR 298
|
This enzyme is an iron-sulfur protein. It is localized to mitochondria in yeast and Arabidopsis. It generates lipoic acid, a thiol antioxidant that is linked to a specific Lys as prosthetic group for the pyruvate and alpha-ketoglutarate dehydrogenase complexes and the glycine-cleavage system. The family shows strong sequence conservation [Biosynthesis of cofactors, prosthetic groups, and carriers, Lipoate]. Length = 302 |
| >gnl|CDD|217866 pfam04055, Radical_SAM, Radical SAM superfamily | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 1e-18
Identities = 28/171 (16%), Positives = 68/171 (39%), Gaps = 10/171 (5%)
Query: 133 MILGDTCTRGCRFCNVKTSRAPPPP---DPDEPTNVAEAIASWGLDYVVITSVDRDDLAD 189
+I+ C C +C + RA P+E A+ +A G++ V++T + L D
Sbjct: 1 IIVTRGCNLRCTYCAFPSIRARGKGRELSPEEILEEAKELARLGVEVVILTGGEPLLLPD 60
Query: 190 QGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSA 249
+ I + + E+ ++GL+ + ++++ ++
Sbjct: 61 LVELLER---LLKLREGEGIRITLETNGTLLDEELLEELKEAGLDRVSISLQSGDDEVLK 117
Query: 250 VRDHRANFKQSLDVLMMAKDY-VPAGTLTKTSIMLGCGETPDQVVSTMEKV 299
+ + F++ L+ L + ++ +P I+ GE + + T+E +
Sbjct: 118 IINRGHTFEEVLEALELLREAGIPVVVDN---IVGLPGENDEDLEETLELL 165
|
Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerisation, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Length = 165 |
| >gnl|CDD|214792 smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 7e-17
Identities = 33/220 (15%), Positives = 82/220 (37%), Gaps = 18/220 (8%)
Query: 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSV----- 182
+ I+ C R C FC+ + R + E +A G ++ +V
Sbjct: 1 PLALYIITRGCPRRCTFCSFPSLRGKLRSRYLEALVREIELLAEKGEKEGLVGTVFIGGG 60
Query: 183 DRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIET 242
L+ + + +R++ L ++ I + + ++G+N + +++
Sbjct: 61 TPTLLSPEQLEELLEAIREILGLAKDVEITIETRPDTLTEELLEALKEAGVNRVSLGVQS 120
Query: 243 VEE--LQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG-CGETPDQVVSTMEKV 299
++ L++ R H + L+ + + ++ P T +++G GET + T++ +
Sbjct: 121 GDDEVLKAINRGH--TVEDVLEAVELLREAGPIK--VSTDLIVGLPGETEEDFEETLKLL 176
Query: 300 RAAGVDVMTFGQYM-----RPSKRHMPVSEYITPEAFERY 334
+ G D ++ +K + + E E
Sbjct: 177 KELGPDRVSIFPLSPRPGTPLAKMYKRLKPPTKEERAELL 216
|
This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases. Length = 216 |
| >gnl|CDD|100105 cd01335, Radical_SAM, Radical SAM superfamily | Back alignment and domain information |
|---|
Score = 52.0 bits (124), Expect = 8e-08
Identities = 31/184 (16%), Positives = 70/184 (38%), Gaps = 8/184 (4%)
Query: 133 MILGDTCTRGCRFCNVKTSRAPPPPDPDEPTN-VAEAIASWGLDYVVITSVDRDDLADQG 191
+ L C C FC+ S+ P P E + + + V+ + L
Sbjct: 1 LELTRGCNLNCGFCSNPASKGRGPESPPEIEEILDIVLEAKERGVEVVILTGGEPLLYP- 59
Query: 192 SGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVR 251
A+ +R+LK+ P I ++E+ + GL+ ++++ +E +
Sbjct: 60 --ELAELLRRLKKELPGFEISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVA--D 115
Query: 252 DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG-CGETPDQVVSTMEKVRAA-GVDVMTF 309
R + + + L K+ AG T++++G E + + +E + D ++
Sbjct: 116 KIRGSGESFKERLEALKELREAGLGLSTTLLVGLGDEDEEDDLEELELLAEFRSPDRVSL 175
Query: 310 GQYM 313
+ +
Sbjct: 176 FRLL 179
|
Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme of the biosynthesis of molybdopterin. Length = 204 |
| >gnl|CDD|223988 COG1060, ThiH, Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 8e-05
Identities = 35/180 (19%), Positives = 66/180 (36%), Gaps = 26/180 (14%)
Query: 139 CTRGCRFCNVKTSRAPPPP---DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHF 195
C C FC P P+E G+ V+I + + ++
Sbjct: 69 CVNDCTFCAFYRKPGDPKAYTLSPEEILEEVREAVKRGITEVLIVGGEH---PELSLEYY 125
Query: 196 AQTVRKLKELKPNMLIEALVP---DFRGNNG------CVREVAKSGLNVFAHNIETVEEL 246
+ R +KE P++ I AL F G ++ + ++GL+ E+
Sbjct: 126 EELFRTIKEEFPDLHIHALSAGEILFLAREGGLSYEEVLKRLKEAGLDSM---PGGGAEI 182
Query: 247 QSA-VRDH----RANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRA 301
S VR + + ++ L++ A G T +++LG ET + + +E +R
Sbjct: 183 LSEEVRKIHCPPKKSPEEWLEIHERAHR---LGIPTTATMLLGHVETREDRIDHLEHIRD 239
|
Length = 370 |
| >gnl|CDD|223576 COG0502, BioB, Biotin synthase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.001
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 227 EVAKSGLNVFAHNIETVEELQSAVR-DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 285
++A +G++ + HN+ET E + ++ L+ L ++ AG + ++G
Sbjct: 149 KLADAGVDRYNHNLETSPEFYENIITTRT--YEDRLNTLENVRE---AGIEVCSGGIVGL 203
Query: 286 GETPDQVV 293
GET +
Sbjct: 204 GETVEDRA 211
|
Length = 335 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 376 | |||
| KOG2672 | 360 | consensus Lipoate synthase [Coenzyme transport and | 100.0 | |
| COG0320 | 306 | LipA Lipoate synthase [Coenzyme metabolism] | 100.0 | |
| PTZ00413 | 398 | lipoate synthase; Provisional | 100.0 | |
| PLN02428 | 349 | lipoic acid synthase | 100.0 | |
| TIGR00510 | 302 | lipA lipoate synthase. The family shows strong seq | 100.0 | |
| PRK12928 | 290 | lipoyl synthase; Provisional | 100.0 | |
| PRK05481 | 289 | lipoyl synthase; Provisional | 100.0 | |
| PRK08444 | 353 | hypothetical protein; Provisional | 99.97 | |
| COG0621 | 437 | MiaB 2-methylthioadenine synthetase [Translation, | 99.97 | |
| PRK05927 | 350 | hypothetical protein; Provisional | 99.97 | |
| TIGR03700 | 351 | mena_SCO4494 putative menaquinone biosynthesis pro | 99.97 | |
| PRK05926 | 370 | hypothetical protein; Provisional | 99.96 | |
| PRK08445 | 348 | hypothetical protein; Provisional | 99.96 | |
| PRK15108 | 345 | biotin synthase; Provisional | 99.96 | |
| PRK08508 | 279 | biotin synthase; Provisional | 99.96 | |
| PLN02389 | 379 | biotin synthase | 99.95 | |
| COG0502 | 335 | BioB Biotin synthase and related enzymes [Coenzyme | 99.95 | |
| PRK07360 | 371 | FO synthase subunit 2; Reviewed | 99.95 | |
| COG1060 | 370 | ThiH Thiamine biosynthesis enzyme ThiH and related | 99.95 | |
| PRK09234 | 843 | fbiC FO synthase; Reviewed | 99.95 | |
| TIGR03551 | 343 | F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav | 99.94 | |
| TIGR03699 | 340 | mena_SCO4550 menaquinone biosynthesis protein, SCO | 99.94 | |
| TIGR00423 | 309 | radical SAM domain protein, CofH subfamily. This p | 99.94 | |
| PRK06256 | 336 | biotin synthase; Validated | 99.94 | |
| PRK09240 | 371 | thiH thiamine biosynthesis protein ThiH; Reviewed | 99.94 | |
| PRK07094 | 323 | biotin synthase; Provisional | 99.94 | |
| TIGR03550 | 322 | F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflav | 99.94 | |
| PRK09234 | 843 | fbiC FO synthase; Reviewed | 99.93 | |
| TIGR02351 | 366 | thiH thiazole biosynthesis protein ThiH. Members t | 99.92 | |
| PRK14332 | 449 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.92 | |
| PRK14340 | 445 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.92 | |
| PRK14327 | 509 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.91 | |
| PRK14339 | 420 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.91 | |
| PRK09613 | 469 | thiH thiamine biosynthesis protein ThiH; Reviewed | 99.91 | |
| PRK14336 | 418 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.91 | |
| PRK14329 | 467 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.9 | |
| PRK14335 | 455 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.9 | |
| PRK06245 | 336 | cofG FO synthase subunit 1; Reviewed | 99.9 | |
| PRK14337 | 446 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.9 | |
| TIGR01579 | 414 | MiaB-like-C MiaB-like tRNA modifying enzyme. This | 99.9 | |
| TIGR00433 | 296 | bioB biotin synthetase. Catalyzes the last step of | 99.9 | |
| PRK14326 | 502 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.89 | |
| PRK14331 | 437 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.89 | |
| TIGR01574 | 438 | miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-3 | 99.89 | |
| PRK14328 | 439 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.89 | |
| PRK14862 | 440 | rimO ribosomal protein S12 methylthiotransferase; | 99.89 | |
| PRK14330 | 434 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.89 | |
| PRK14338 | 459 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.89 | |
| TIGR01125 | 430 | MiaB-like tRNA modifying enzyme YliG, TIGR01125. T | 99.89 | |
| PRK14333 | 448 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.88 | |
| TIGR00089 | 429 | RNA modification enzyme, MiaB family. This subfami | 99.88 | |
| PRK14325 | 444 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.88 | |
| TIGR01578 | 420 | MiaB-like-B MiaB-like tRNA modifying enzyme, archa | 99.88 | |
| PRK14334 | 440 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.88 | |
| PRK06267 | 350 | hypothetical protein; Provisional | 99.85 | |
| KOG2900 | 380 | consensus Biotin synthase [Coenzyme transport and | 99.79 | |
| smart00729 | 216 | Elp3 Elongator protein 3, MiaB family, Radical SAM | 99.77 | |
| KOG2492 | 552 | consensus CDK5 activator-binding protein [Signal t | 99.76 | |
| TIGR02026 | 497 | BchE magnesium-protoporphyrin IX monomethyl ester | 99.71 | |
| PRK01254 | 707 | hypothetical protein; Provisional | 99.7 | |
| TIGR03471 | 472 | HpnJ hopanoid biosynthesis associated radical SAM | 99.69 | |
| cd01335 | 204 | Radical_SAM Radical SAM superfamily. Enzymes of th | 99.69 | |
| PF04055 | 166 | Radical_SAM: Radical SAM superfamily; InterPro: IP | 99.66 | |
| PRK00955 | 620 | hypothetical protein; Provisional | 99.65 | |
| PRK08207 | 488 | coproporphyrinogen III oxidase; Provisional | 99.65 | |
| PRK08599 | 377 | coproporphyrinogen III oxidase; Provisional | 99.65 | |
| PRK13361 | 329 | molybdenum cofactor biosynthesis protein A; Provis | 99.65 | |
| PRK05904 | 353 | coproporphyrinogen III oxidase; Provisional | 99.62 | |
| TIGR02666 | 334 | moaA molybdenum cofactor biosynthesis protein A, b | 99.62 | |
| TIGR01212 | 302 | radical SAM protein, TIGR01212 family. This unchar | 99.62 | |
| PRK00164 | 331 | moaA molybdenum cofactor biosynthesis protein A; R | 99.61 | |
| PRK05660 | 378 | HemN family oxidoreductase; Provisional | 99.61 | |
| PRK05799 | 374 | coproporphyrinogen III oxidase; Provisional | 99.6 | |
| PRK05628 | 375 | coproporphyrinogen III oxidase; Validated | 99.59 | |
| PLN02951 | 373 | Molybderin biosynthesis protein CNX2 | 99.59 | |
| PRK08446 | 350 | coproporphyrinogen III oxidase; Provisional | 99.58 | |
| TIGR00538 | 455 | hemN oxygen-independent coproporphyrinogen III oxi | 99.58 | |
| PRK09249 | 453 | coproporphyrinogen III oxidase; Provisional | 99.57 | |
| TIGR00539 | 360 | hemN_rel putative oxygen-independent coproporphyri | 99.57 | |
| PRK08208 | 430 | coproporphyrinogen III oxidase; Validated | 99.56 | |
| TIGR02668 | 302 | moaA_archaeal probable molybdenum cofactor biosynt | 99.56 | |
| PRK13347 | 453 | coproporphyrinogen III oxidase; Provisional | 99.55 | |
| PRK09058 | 449 | coproporphyrinogen III oxidase; Provisional | 99.55 | |
| PRK07379 | 400 | coproporphyrinogen III oxidase; Provisional | 99.54 | |
| PRK08898 | 394 | coproporphyrinogen III oxidase; Provisional | 99.52 | |
| PRK09057 | 380 | coproporphyrinogen III oxidase; Provisional | 99.52 | |
| COG2896 | 322 | MoaA Molybdenum cofactor biosynthesis enzyme [Coen | 99.51 | |
| PRK05301 | 378 | pyrroloquinoline quinone biosynthesis protein PqqE | 99.49 | |
| TIGR01210 | 313 | conserved hypothetical protein TIGR01210. This fam | 99.49 | |
| PRK06294 | 370 | coproporphyrinogen III oxidase; Provisional | 99.49 | |
| KOG4355 | 547 | consensus Predicted Fe-S oxidoreductase [General f | 99.47 | |
| PRK06582 | 390 | coproporphyrinogen III oxidase; Provisional | 99.45 | |
| COG1032 | 490 | Fe-S oxidoreductase [Energy production and convers | 99.43 | |
| TIGR01290 | 442 | nifB nitrogenase cofactor biosynthesis protein Nif | 99.43 | |
| PRK08629 | 433 | coproporphyrinogen III oxidase; Provisional | 99.41 | |
| TIGR02109 | 358 | PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. | 99.41 | |
| TIGR02495 | 191 | NrdG2 anaerobic ribonucleoside-triphosphate reduct | 99.29 | |
| COG2516 | 339 | Biotin synthase-related enzyme [General function p | 99.27 | |
| TIGR03470 | 318 | HpnH hopanoid biosynthesis associated radical SAM | 99.26 | |
| COG0635 | 416 | HemN Coproporphyrinogen III oxidase and related Fe | 99.26 | |
| COG1856 | 275 | Uncharacterized homolog of biotin synthetase [Func | 99.25 | |
| TIGR02493 | 235 | PFLA pyruvate formate-lyase 1-activating enzyme. A | 99.25 | |
| TIGR01211 | 522 | ELP3 histone acetyltransferase, ELP3 family. The S | 99.25 | |
| COG1242 | 312 | Predicted Fe-S oxidoreductase [General function pr | 99.22 | |
| PRK11145 | 246 | pflA pyruvate formate lyase-activating enzyme 1; P | 99.21 | |
| TIGR03822 | 321 | AblA_like_2 lysine-2,3-aminomutase-related protein | 99.19 | |
| PRK14456 | 368 | ribosomal RNA large subunit methyltransferase N; P | 99.14 | |
| PRK14469 | 343 | ribosomal RNA large subunit methyltransferase N; P | 99.12 | |
| TIGR03278 | 404 | methan_mark_10 putative methanogenesis marker prot | 99.11 | |
| COG0535 | 347 | Predicted Fe-S oxidoreductases [General function p | 99.09 | |
| PRK14463 | 349 | ribosomal RNA large subunit methyltransferase N; P | 99.08 | |
| PRK14455 | 356 | ribosomal RNA large subunit methyltransferase N; P | 99.07 | |
| PRK14468 | 343 | ribosomal RNA large subunit methyltransferase N; P | 99.01 | |
| TIGR03821 | 321 | AblA_like_1 lysine-2,3-aminomutase-related protein | 99.0 | |
| PRK13762 | 322 | tRNA-modifying enzyme; Provisional | 99.0 | |
| PRK14460 | 354 | ribosomal RNA large subunit methyltransferase N; P | 98.99 | |
| PRK14466 | 345 | ribosomal RNA large subunit methyltransferase N; P | 98.98 | |
| PRK14457 | 345 | ribosomal RNA large subunit methyltransferase N; P | 98.98 | |
| TIGR00238 | 331 | KamA family protein. Note that the E. coli homolog | 98.97 | |
| PRK14470 | 336 | ribosomal RNA large subunit methyltransferase N; P | 98.95 | |
| PRK13758 | 370 | anaerobic sulfatase-maturase; Provisional | 98.91 | |
| COG2100 | 414 | Predicted Fe-S oxidoreductase [General function pr | 98.91 | |
| PRK14459 | 373 | ribosomal RNA large subunit methyltransferase N; P | 98.89 | |
| TIGR00048 | 355 | radical SAM enzyme, Cfr family. A Staphylococcus s | 98.84 | |
| PRK14453 | 347 | chloramphenicol/florfenicol resistance protein; Pr | 98.75 | |
| TIGR03820 | 417 | lys_2_3_AblA lysine-2,3-aminomutase. This model de | 98.72 | |
| COG1180 | 260 | PflA Pyruvate-formate lyase-activating enzyme [Pos | 98.69 | |
| COG2108 | 353 | Uncharacterized conserved protein related to pyruv | 98.68 | |
| PRK14467 | 348 | ribosomal RNA large subunit methyltransferase N; P | 98.68 | |
| COG1243 | 515 | ELP3 Histone acetyltransferase [Transcription / Ch | 98.67 | |
| COG4277 | 404 | Predicted DNA-binding protein with the Helix-hairp | 98.66 | |
| PRK13745 | 412 | anaerobic sulfatase-maturase; Provisional | 98.66 | |
| COG0731 | 296 | Fe-S oxidoreductases [Energy production and conver | 98.64 | |
| PRK14464 | 344 | ribosomal RNA large subunit methyltransferase N; P | 98.56 | |
| COG1031 | 560 | Uncharacterized Fe-S oxidoreductase [Energy produc | 98.55 | |
| TIGR02494 | 295 | PFLE_PFLC glycyl-radical enzyme activating protein | 98.54 | |
| PRK14462 | 356 | ribosomal RNA large subunit methyltransferase N; P | 98.52 | |
| PRK11194 | 372 | ribosomal RNA large subunit methyltransferase N; P | 98.47 | |
| KOG2876 | 323 | consensus Molybdenum cofactor biosynthesis pathway | 98.43 | |
| PRK14454 | 342 | ribosomal RNA large subunit methyltransferase N; P | 98.41 | |
| PRK14465 | 342 | ribosomal RNA large subunit methyltransferase N; P | 98.34 | |
| PRK10076 | 213 | pyruvate formate lyase II activase; Provisional | 98.27 | |
| PRK14461 | 371 | ribosomal RNA large subunit methyltransferase N; P | 98.26 | |
| COG1244 | 358 | Predicted Fe-S oxidoreductase [General function pr | 98.24 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 98.21 | |
| COG1313 | 335 | PflX Uncharacterized Fe-S protein PflX, homolog of | 98.2 | |
| COG1533 | 297 | SplB DNA repair photolyase [DNA replication, recom | 98.16 | |
| COG0641 | 378 | AslB Arylsulfatase regulator (Fe-S oxidoreductase) | 98.03 | |
| COG1625 | 414 | Fe-S oxidoreductase, related to NifB/MoaA family [ | 97.99 | |
| COG1509 | 369 | KamA Lysine 2,3-aminomutase [Amino acid transport | 97.96 | |
| TIGR03365 | 238 | Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosyn | 97.94 | |
| PF13353 | 139 | Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A | 97.86 | |
| PF13394 | 119 | Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B | 97.71 | |
| TIGR02826 | 147 | RNR_activ_nrdG3 anaerobic ribonucleoside-triphosph | 97.66 | |
| PRK05692 | 287 | hydroxymethylglutaryl-CoA lyase; Provisional | 97.6 | |
| TIGR03279 | 433 | cyano_FeS_chp putative FeS-containing Cyanobacteri | 97.41 | |
| TIGR02491 | 154 | NrdG anaerobic ribonucleoside-triphosphate reducta | 97.39 | |
| cd07938 | 274 | DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, | 97.38 | |
| COG5014 | 228 | Predicted Fe-S oxidoreductase [General function pr | 97.34 | |
| COG0820 | 349 | Predicted Fe-S-cluster redox enzyme [General funct | 97.33 | |
| PLN02746 | 347 | hydroxymethylglutaryl-CoA lyase | 97.33 | |
| PRK11121 | 154 | nrdG anaerobic ribonucleotide reductase-activating | 97.21 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 97.2 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 97.17 | |
| cd07948 | 262 | DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s | 97.17 | |
| TIGR02090 | 363 | LEU1_arch isopropylmalate/citramalate/homocitrate | 97.02 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 96.89 | |
| TIGR02660 | 365 | nifV_homocitr homocitrate synthase NifV. This fami | 96.85 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 96.84 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 96.83 | |
| PRK11858 | 378 | aksA trans-homoaconitate synthase; Reviewed | 96.81 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 96.75 | |
| PF00682 | 237 | HMGL-like: HMGL-like of this family is not conserv | 96.16 | |
| PRK09389 | 488 | (R)-citramalate synthase; Provisional | 96.12 | |
| cd07945 | 280 | DRE_TIM_CMS Leptospira interrogans citramalate syn | 96.1 | |
| COG0602 | 212 | NrdG Organic radical activating enzymes [Posttrans | 95.94 | |
| PRK00915 | 513 | 2-isopropylmalate synthase; Validated | 95.71 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 95.57 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 95.4 | |
| cd07941 | 273 | DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 | 95.31 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 95.08 | |
| PF04481 | 242 | DUF561: Protein of unknown function (DUF561); Inte | 94.93 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 94.81 | |
| COG0119 | 409 | LeuA Isopropylmalate/homocitrate/citramalate synth | 94.66 | |
| TIGR01108 | 582 | oadA oxaloacetate decarboxylase alpha subunit. Thi | 94.63 | |
| TIGR00973 | 494 | leuA_bact 2-isopropylmalate synthase, bacterial ty | 94.48 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 94.18 | |
| PRK14057 | 254 | epimerase; Provisional | 94.18 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 93.99 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 93.9 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 93.68 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 93.43 | |
| PRK12344 | 524 | putative alpha-isopropylmalate/homocitrate synthas | 93.4 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 93.39 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 93.22 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 92.98 | |
| PF00834 | 201 | Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam | 92.88 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 92.88 | |
| TIGR00977 | 526 | LeuA_rel 2-isopropylmalate synthase/homocitrate sy | 92.73 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 92.71 | |
| PLN03228 | 503 | methylthioalkylmalate synthase; Provisional | 92.42 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 92.24 | |
| cd07947 | 279 | DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synt | 92.18 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 92.1 | |
| PRK08005 | 210 | epimerase; Validated | 92.0 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 91.99 | |
| PRK09722 | 229 | allulose-6-phosphate 3-epimerase; Provisional | 91.81 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 91.79 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 91.64 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 91.3 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 91.23 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 91.15 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 90.85 | |
| COG0685 | 291 | MetF 5,10-methylenetetrahydrofolate reductase [Ami | 90.75 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 90.72 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 90.7 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 90.61 | |
| TIGR01496 | 257 | DHPS dihydropteroate synthase. This model represen | 90.4 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 90.19 | |
| PF05853 | 272 | DUF849: Prokaryotic protein of unknown function (D | 90.01 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 89.88 | |
| TIGR02146 | 344 | LysS_fung_arch homocitrate synthase. This model in | 89.81 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 89.56 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 89.56 | |
| cd07942 | 284 | DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and | 89.45 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 89.41 | |
| PLN02321 | 632 | 2-isopropylmalate synthase | 89.22 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 88.9 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 88.89 | |
| COG1856 | 275 | Uncharacterized homolog of biotin synthetase [Func | 88.62 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 88.41 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 88.41 | |
| cd00739 | 257 | DHPS DHPS subgroup of Pterin binding enzymes. DHPS | 88.25 | |
| TIGR00970 | 564 | leuA_yeast 2-isopropylmalate synthase, yeast type. | 87.93 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 87.87 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 87.8 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 87.78 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 87.77 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 87.47 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 87.38 | |
| PRK00043 | 212 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 87.1 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 87.1 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 87.04 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 86.94 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 86.78 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 86.54 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 86.48 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 86.14 | |
| KOG2550 | 503 | consensus IMP dehydrogenase/GMP reductase [Nucleot | 85.88 | |
| cd00564 | 196 | TMP_TenI Thiamine monophosphate synthase (TMP synt | 85.78 | |
| cd00537 | 274 | MTHFR Methylenetetrahydrofolate reductase (MTHFR). | 85.72 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 84.97 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 84.94 | |
| PRK11613 | 282 | folP dihydropteroate synthase; Provisional | 84.89 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 84.83 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 84.72 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 84.57 | |
| PTZ00170 | 228 | D-ribulose-5-phosphate 3-epimerase; Provisional | 84.47 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 84.35 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 84.27 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 84.2 | |
| KOG2535 | 554 | consensus RNA polymerase II elongator complex, sub | 83.86 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 83.69 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 83.68 | |
| PRK02227 | 238 | hypothetical protein; Provisional | 82.96 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 82.66 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 82.5 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 82.22 | |
| KOG2368 | 316 | consensus Hydroxymethylglutaryl-CoA lyase [Energy | 82.2 | |
| TIGR00676 | 272 | fadh2 5,10-methylenetetrahydrofolate reductase, pr | 82.17 | |
| PF04476 | 235 | DUF556: Protein of unknown function (DUF556); Inte | 82.12 | |
| PRK02227 | 238 | hypothetical protein; Provisional | 81.95 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 81.64 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 81.57 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 81.36 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 81.21 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 81.12 | |
| COG0821 | 361 | gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat | 81.04 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 80.86 | |
| cd00384 | 314 | ALAD_PBGS Porphobilinogen synthase (PBGS), which i | 80.78 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 80.6 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 80.49 | |
| COG4474 | 180 | Uncharacterized protein conserved in bacteria [Fun | 80.47 | |
| TIGR00677 | 281 | fadh2_euk methylenetetrahydrofolate reductase, euk | 80.34 | |
| PLN02540 | 565 | methylenetetrahydrofolate reductase | 80.32 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 80.25 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 80.2 |
| >KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-108 Score=766.18 Aligned_cols=333 Identities=60% Similarity=1.049 Sum_probs=319.2
Q ss_pred HHHHhhhCCCCccccccCCCC--CCccccccCC----CCCCCCCcceeecCCCCccHHHHHHHHhhcChhhhhhhcCCCC
Q 017179 42 LRARLASESPALSDFIDLQSN--SSYSVEVGTK----KKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPN 115 (376)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~p~wl~~~~p~~~~~~~~~~~l~~~~L~tvce~A~cpn 115 (376)
|++.|+ +||+|+||++++.+ .++..+.+.+ ..++|+|+|||+++|.|+||++|+..|++++||||||||+|||
T Consensus 19 ~~~~l~-~gPs~~DFv~~d~~~~~~~~~e~~~~~~~~~~~~rlP~WLK~~iP~G~n~~~iK~~lr~l~L~TVCEEArCPN 97 (360)
T KOG2672|consen 19 FKELLA-KGPSFADFVSGDKPLRADWDFEKGRKKREGEERLRLPPWLKTKIPLGENYNKIKKDLRELKLHTVCEEARCPN 97 (360)
T ss_pred hhhhhc-cCCchhhhhcCCcccccccchhhchhhhhccccccCChhhcccCCCCccHHHHHHHHhhCchhhhhhhccCCc
Confidence 788887 99999999999864 2333333333 3589999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHH
Q 017179 116 LGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHF 195 (376)
Q Consensus 116 ~~ec~~~~~~~~~tat~m~i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~ 195 (376)
|||||||++++++|||||+|||+|+|+|+||+|+++|.|+++||.||++.|+++++||+.||||||+||||++|+|++||
T Consensus 98 iGECWgG~d~~~ATATIMlmGDTCTRGCRFCsVKTsR~PpPlDp~EPeNTAeAIasWgl~YiVlTSVDRDDlpDgGa~Hi 177 (360)
T KOG2672|consen 98 IGECWGGGDKSTATATIMLMGDTCTRGCRFCSVKTSRNPPPLDPNEPENTAEAIASWGLDYIVLTSVDRDDLPDGGANHI 177 (360)
T ss_pred hhhccCCCCCcceeEEEEeecCccccCcceeeeecCCCCcCCCCCCcccHHHHHHHcCCCeEEEEecccccCcCcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCc
Q 017179 196 AQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGT 275 (376)
Q Consensus 196 ~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi 275 (376)
+++|+.||++.|.+.||+|+|||.|+.+.++.++.+|+|+|+||+|||++|.+.||+++++|+|+|++|++|++..|. +
T Consensus 178 AkTVq~iK~k~p~ilvE~L~pDF~Gd~~~Ve~va~SGLDV~AHNvETVe~Ltp~VRD~RA~yrQSL~VLk~aK~~~P~-l 256 (360)
T KOG2672|consen 178 AKTVQKIKEKAPEILVECLTPDFRGDLKAVEKVAKSGLDVYAHNVETVEELTPFVRDPRANYRQSLSVLKHAKEVKPG-L 256 (360)
T ss_pred HHHHHHHHhhCcccchhhcCccccCchHHHHHHHhcCccceecchhhHHhcchhhcCcccchHHhHHHHHHHHhhCCC-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999997 9
Q ss_pred eEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhccchhHhhh
Q 017179 276 LTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSS 355 (376)
Q Consensus 276 ~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrss 355 (376)
.++|+||+|+|||+|++.++|++||+.++|+++|||||||+++|++|.+||+|+.|++|++++.++||+|+|||||||||
T Consensus 257 itktsiMlglgetdeei~~tl~dLr~~~vdv~t~gqym~ptkrhl~v~eyvtpekf~~w~~~~~~lgf~y~AsgplvrSs 336 (360)
T KOG2672|consen 257 ITKTSIMLGLGETDEEIKQTLKDLRAADVDVVTFGQYMQPTKRHLKVKEYVTPEKFDYWKEYGEELGFLYVASGPLVRSS 336 (360)
T ss_pred eehhhhhhccCCCHHHHHHHHHHHHHcCCcEEecccccCCccccceeEEeeCHHHHHHHHHHhhhcceEEeccCceeech
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcHHHHHHHHHhhhhhcCC
Q 017179 356 YKAGEFYIKSMIESDRAATSS 376 (376)
Q Consensus 356 y~a~~~~~~~~~~~~~~~~~~ 376 (376)
|+|||+||+|+|++|+..++|
T Consensus 337 ykage~~i~~~l~~r~~~~~s 357 (360)
T KOG2672|consen 337 YKAGEYFIKNVLEKRKSKNSS 357 (360)
T ss_pred hhhhHHHHHHHHHhcccCCCc
Confidence 999999999999999988654
|
|
| >COG0320 LipA Lipoate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-94 Score=678.76 Aligned_cols=287 Identities=54% Similarity=0.964 Sum_probs=280.8
Q ss_pred CCCCCCCcceeecCCCCccHHHHHHHHhhcChhhhhhhcCCCCcccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCC
Q 017179 73 KKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSR 152 (376)
Q Consensus 73 ~~~~~~p~wl~~~~p~~~~~~~~~~~l~~~~L~tvce~A~cpn~~ec~~~~~~~~~tat~m~i~d~C~~~C~FC~v~~~r 152 (376)
...+++|+|||+++|.|..|.++++++++++||||||||.||||+|||+.+ |||||+||+.|+|+|.||.|.+++
T Consensus 19 ~~~~rkP~Wlr~k~p~~~~~~~~k~~~r~~~L~TVCEEA~CPNi~ECw~~~-----tATFmImG~~CTR~C~FC~V~~g~ 93 (306)
T COG0320 19 EELLRKPEWLKVKAPTGSRYQEIKEILRKNGLHTVCEEASCPNIGECWSRG-----TATFMILGDICTRRCRFCDVKTGR 93 (306)
T ss_pred chhccCcHhheecCCCCchHHHHHHHHHhcCCceecccCCCCChHHHhcCC-----ceEEeeccchhccCCCccccCCCC
Confidence 446799999999999999999999999999999999999999999999988 999999999999999999999998
Q ss_pred CCCCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcC
Q 017179 153 APPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSG 232 (376)
Q Consensus 153 ~~~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aG 232 (376)
|.++|++|+.++|++++.+|++|||||||+||||+|||+.||+++|++|++.+|++.||+|+|||.|+.+.++.+.++|
T Consensus 94 -P~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ire~~P~t~iEvL~PDF~G~~~al~~v~~~~ 172 (306)
T COG0320 94 -PNPLDPDEPERVAEAVKDMGLKYVVITSVDRDDLPDGGAQHFAECIRAIRELNPQTTIEVLTPDFRGNDDALEIVADAG 172 (306)
T ss_pred -CCCCCCchHHHHHHHHHHhCCCeEEEEeeccccccccchHHHHHHHHHHHhhCCCceEEEeCccccCCHHHHHHHHhcC
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecC
Q 017179 233 LNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQY 312 (376)
Q Consensus 233 ld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY 312 (376)
+|+|+||+|||+++|++|| ++++|+++|++|+.+++..|. +.|||+||||||||++|++++|++||+++||+++||||
T Consensus 173 pdV~nHNvETVprL~~~VR-p~A~Y~~SL~~L~~~k~~~P~-i~TKSgiMlGLGEt~~Ev~e~m~DLr~~gvdilTiGQY 250 (306)
T COG0320 173 PDVFNHNVETVPRLYPRVR-PGATYERSLSLLERAKELGPD-IPTKSGLMVGLGETDEEVIEVMDDLRSAGVDILTIGQY 250 (306)
T ss_pred cchhhcccccchhcccccC-CCCcHHHHHHHHHHHHHhCCC-cccccceeeecCCcHHHHHHHHHHHHHcCCCEEEeccc
Confidence 9999999999999999999 799999999999999999998 99999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhccchhHhhhhhhcHHHHHHHH
Q 017179 313 MRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKAGEFYIKSMI 367 (376)
Q Consensus 313 ~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrssy~a~~~~~~~~~ 367 (376)
+||+.+|+||.+||+|++|++|+++|.+|||.+|+|||||||||||||.|.++..
T Consensus 251 lqPS~~HlpV~ryv~PeeF~~~~~~a~~~GF~~v~sgPlvRSSYhA~~~~~~~~~ 305 (306)
T COG0320 251 LQPSRKHLPVQRYVTPEEFDELEEVAEEMGFLHVASGPLVRSSYHADEQFAEAEV 305 (306)
T ss_pred cCCccccCCceeccCHHHHHHHHHHHHHccchhhccCcccccccchHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999987754
|
|
| >PTZ00413 lipoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-91 Score=684.83 Aligned_cols=337 Identities=52% Similarity=0.916 Sum_probs=310.2
Q ss_pred chHHHHHHhhhC---CCCccccccCCCCCCccccc--cCCCCCCCCCcceeecCCCCc----cHHHHHHHHhhcChhhhh
Q 017179 38 TLAGLRARLASE---SPALSDFIDLQSNSSYSVEV--GTKKKPLPKPKWMKESIPGGD----KYVQIKKKLRELKLHTVC 108 (376)
Q Consensus 38 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~wl~~~~p~~~----~~~~~~~~l~~~~L~tvc 108 (376)
-+..|+++++++ +++|.+|+.......++... .-++...++|+|||+++|.|+ +|.+++++|++++|||||
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~kP~Wlk~~~~~~~~~~~~~~~~~~~~~~~~L~TVC 127 (398)
T PTZ00413 48 FLERFRERLNSDKTGKNSLEGFVDLPEGLKPSAASIGPIKRGEEPLPPWFKVKVPKGASRRPRFNRIRRSMREKKLHTVC 127 (398)
T ss_pred HHHHHHHhhhcccccCCchhhhhcCccccccccccCCCccCCCCCCCcceeecCCCCccccchHHHHHHHHHhCCCceee
Confidence 478899998733 46999999776443333221 334455789999999999998 899999999999999999
Q ss_pred hhcCCCCcccccCCC-CCCccEEEEeeeCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCC
Q 017179 109 EEAKCPNLGECWSGG-ETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDL 187 (376)
Q Consensus 109 e~A~cpn~~ec~~~~-~~~~~tat~m~i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl 187 (376)
|||+||||+|||+++ ++|++|||||+|||.|+++|+||++++...|..+|++||.+.|+++.++|++|+|||||+|||+
T Consensus 128 eea~CPNi~EC~~~~~~~~~~tATfmilG~~CTr~C~FCaqstg~~p~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL 207 (398)
T PTZ00413 128 EEAKCPNIGECWGGGDEEGTATATIMVMGDHCTRGCRFCSVKTSRKPPPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDL 207 (398)
T ss_pred CCCCCCChHHHhCCCCCCCCceeEeeecCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCC
Confidence 999999999999976 5789999999999999999999999986645679999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHH
Q 017179 188 ADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMA 267 (376)
Q Consensus 188 ~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~a 267 (376)
+|+|+++|+++|++|++..|++.|++++|||.|+.+.++.|+++|+|+|+|||||++++|+.||+++++|+++|++|+.+
T Consensus 208 ~D~ga~~~a~~I~~Ir~~~p~~~IevligDf~g~~e~l~~L~eAG~dvynHNLETv~rLyp~VRt~~atYe~sLe~Lr~A 287 (398)
T PTZ00413 208 PDGGASHVARCVELIKESNPELLLEALVGDFHGDLKSVEKLANSPLSVYAHNIECVERITPYVRDRRASYRQSLKVLEHV 287 (398)
T ss_pred ChhhHHHHHHHHHHHHccCCCCeEEEcCCccccCHHHHHHHHhcCCCEEecccccCHhHHHHHccCcCCHHHHHHHHHHH
Confidence 99999999999999999889999999999999999999999999999999999999999999995579999999999999
Q ss_pred HHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhc
Q 017179 268 KDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVA 347 (376)
Q Consensus 268 k~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~ 347 (376)
++.++.|+.|||++|||+|||++|++++|++|+++++|+++|||||||+++|+||.+||+|++|++|+++|.+|||.+|+
T Consensus 288 Ke~f~~gi~tcSGiIVGLGET~eEvie~m~dLrelGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~v~ 367 (398)
T PTZ00413 288 KEFTNGAMLTKSSIMLGLGETEEEVRQTLRDLRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYCA 367 (398)
T ss_pred HHHhcCCceEeeeeEecCCCCHHHHHHHHHHHHHcCCcEEeeccccCCCcccCCceeccCHHHHHHHHHHHHHcCCceEE
Confidence 99754479999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHhhhhhhcHHHHHHHHHhhhhhc
Q 017179 348 SGPMVRSSYKAGEFYIKSMIESDRAAT 374 (376)
Q Consensus 348 sgp~vrssy~a~~~~~~~~~~~~~~~~ 374 (376)
|||||||||||+|+|+++++++|++..
T Consensus 368 sgPlVRSSY~A~e~~~~~~~~~r~~~~ 394 (398)
T PTZ00413 368 SGPLVRSSYRAGEYYIKNLVKQRRKAK 394 (398)
T ss_pred ecCccccchhccHHHHHHHHHhhhhhc
Confidence 999999999999999999999998753
|
|
| >PLN02428 lipoic acid synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-87 Score=662.29 Aligned_cols=333 Identities=74% Similarity=1.210 Sum_probs=313.1
Q ss_pred chHHHHHHhhhCCCCccccccCCCCCCccccccCCCCCCCCCcceeecCCCCccHHHHHHHHhhcChhhhhhhcCCCCcc
Q 017179 38 TLAGLRARLASESPALSDFIDLQSNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLG 117 (376)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~wl~~~~p~~~~~~~~~~~l~~~~L~tvce~A~cpn~~ 117 (376)
-++.|+++++..||+|.+|++..... .+.+.+....++|+|||+++|.|++|.+++++|++++||||||||+|||++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~p~wl~~~~~~~~~~~~~~~~~~~~~l~tvc~~a~cpn~~ 90 (349)
T PLN02428 14 TLAALRARLASESPSLGDFVSLGPYT---LGSYGRDKPLPKPKWLRQRAPGGEKYTEIKEKLRELKLNTVCEEAQCPNIG 90 (349)
T ss_pred hhhHHHHhhccCCCchHhhhcCCccc---ccccccCCCCCCCcceeecCCCCchHHHHHHHHHHCCCceeecCCCCCChH
Confidence 48889999999999999999853221 122344456789999999999999999999999999999999999999999
Q ss_pred cccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHH
Q 017179 118 ECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQ 197 (376)
Q Consensus 118 ec~~~~~~~~~tat~m~i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~e 197 (376)
|||++++++++|+|||++||+|+++|+||++++.+++...+++||+++|+++.++|+++|+||||++||++|+|+++|++
T Consensus 91 ec~~~~~~~~~taT~milg~gCtr~CrFCav~~~~~p~~~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~~~~e 170 (349)
T PLN02428 91 ECWNGGGTGTATATIMILGDTCTRGCRFCAVKTSRTPPPPDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSGHFAE 170 (349)
T ss_pred HhhCCCCCCCceEEEEEecCCCCCCCCCCcCCCCCCCCCCChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHHHHHH
Confidence 99999999999999999999999999999999877666788999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceE
Q 017179 198 TVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLT 277 (376)
Q Consensus 198 lvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~t 277 (376)
+|+.|++..|.++|++++|+|.++++.++.|+++|+|+++||+||++++|+.|++++++|++++++|+.|++.+| |+.+
T Consensus 171 lir~Ir~~~P~i~Ie~L~pdf~~d~elL~~L~eAG~d~i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~p-Gi~t 249 (349)
T PLN02428 171 TVRRLKQLKPEILVEALVPDFRGDLGAVETVATSGLDVFAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKP-GLLT 249 (349)
T ss_pred HHHHHHHhCCCcEEEEeCccccCCHHHHHHHHHcCCCEEccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCC-CCeE
Confidence 999999999999999999999999999999999999999999999999999999668999999999999999876 5999
Q ss_pred EEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhccchhHhhhhh
Q 017179 278 KTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYK 357 (376)
Q Consensus 278 kt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrssy~ 357 (376)
+++||+|||||+||++++|++|+++++|+++||||+||++.|++|.+||+|++|++|+++|.+|||.+|+||||||||||
T Consensus 250 kSg~MvGLGET~Edv~e~l~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vrssy~ 329 (349)
T PLN02428 250 KTSIMLGLGETDEEVVQTMEDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVRSSYK 329 (349)
T ss_pred EEeEEEecCCCHHHHHHHHHHHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCcccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHhhhhhc
Q 017179 358 AGEFYIKSMIESDRAAT 374 (376)
Q Consensus 358 a~~~~~~~~~~~~~~~~ 374 (376)
|+|.|+++++++|+.+.
T Consensus 330 a~~~~~~~~~~~~~~~~ 346 (349)
T PLN02428 330 AGEFFIKSMIREDRAKA 346 (349)
T ss_pred hHHHHHHHHHHhhcccc
Confidence 99999999999998764
|
|
| >TIGR00510 lipA lipoate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-83 Score=623.39 Aligned_cols=294 Identities=49% Similarity=0.886 Sum_probs=283.1
Q ss_pred cCCCCCCCCCcceeecCCCCccHHHHHHHHhhcChhhhhhhcCCCCcccccCCCCCCccEEEEeeeCCccCCCCcCCCCC
Q 017179 70 GTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVK 149 (376)
Q Consensus 70 ~~~~~~~~~p~wl~~~~p~~~~~~~~~~~l~~~~L~tvce~A~cpn~~ec~~~~~~~~~tat~m~i~d~C~~~C~FC~v~ 149 (376)
.++....++|+|||+++|.|++|.+++++|++++||||||||+|||++|||+++ |+|||++||+|+++|+||+++
T Consensus 9 ~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~l~tvc~~a~cpn~~ec~~~~-----tatfm~i~~gC~~~C~FC~v~ 83 (302)
T TIGR00510 9 PNKEILLRKPEWLKIKLPLGTVIAQIKNTMKNKGLHTVCEEASCPNLTECWNHG-----TATFMILGDICTRRCPFCDVA 83 (302)
T ss_pred cccCccCCCCcceEecCCCCchHHHHHHHHHHCCCceeecCCCCCCcccccCCC-----EEEEEecCcCcCCCCCcCCcc
Confidence 345567789999999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred CCCCCCCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHH
Q 017179 150 TSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVA 229 (376)
Q Consensus 150 ~~r~~~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~ 229 (376)
+.+++...+++||+++|++++++|++||+||||+++|++|+|..+|+++|++|++..|++.|++++|++.++.+.++.|+
T Consensus 84 ~~rg~~~~~~eei~~~a~~~~~~GlkevvLTsv~~ddl~d~g~~~l~~li~~I~~~~p~i~Ievl~~d~~g~~e~l~~l~ 163 (302)
T TIGR00510 84 HGRNPLPPDPEEPAKLAETIKDMGLKYVVITSVDRDDLEDGGASHLAECIEAIREKLPNIKIETLVPDFRGNIAALDILL 163 (302)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeecCCCcccccHHHHHHHHHHHHhcCCCCEEEEeCCcccCCHHHHHHHH
Confidence 88777667899999999999999999999999999999988899999999999998899999999999988889999999
Q ss_pred HcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEe
Q 017179 230 KSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (376)
Q Consensus 230 ~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~ 309 (376)
++|+|+++||+||++++|++|+ ++++|++++++++.+++..|+ +.++|+||||||||+||++++|++|++++++.+++
T Consensus 164 ~aG~dv~~hnlEt~~~l~~~vr-r~~t~e~~Le~l~~ak~~~pg-i~~~TgiIVGlGETeee~~etl~~Lrelg~d~v~i 241 (302)
T TIGR00510 164 DAPPDVYNHNLETVERLTPFVR-PGATYRWSLKLLERAKEYLPN-LPTKSGIMVGLGETNEEIKQTLKDLRDHGVTMVTL 241 (302)
T ss_pred HcCchhhcccccchHHHHHHhC-CCCCHHHHHHHHHHHHHhCCC-CeecceEEEECCCCHHHHHHHHHHHHhcCCCEEEe
Confidence 9999999999999999999999 799999999999999998875 99999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhccchhHhhhhhhcHHHHHHHHHhh
Q 017179 310 GQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKAGEFYIKSMIESD 370 (376)
Q Consensus 310 ~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrssy~a~~~~~~~~~~~~ 370 (376)
|||+||+++|+||.+|++|++|++|+++|.+|||.+|+|||||||||||+|.|+++++++|
T Consensus 242 gqYl~p~~~~~~v~~~~~p~~f~~~~~~a~~~gf~~v~~~p~vrssy~a~~~~~~~~~~~~ 302 (302)
T TIGR00510 242 GQYLRPSRRHLPVKRYVSPEEFDYYRSVALEMGFLHAACGPFVRSSYHADSLFAAGRLVKT 302 (302)
T ss_pred ecccCCCCCCCccccCCCHHHHHHHHHHHHHcCChheEecccchhhhhHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999999999999999999875
|
The family shows strong sequence conservation. |
| >PRK12928 lipoyl synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-75 Score=563.64 Aligned_cols=280 Identities=48% Similarity=0.850 Sum_probs=269.2
Q ss_pred CCCCCCCcceeecCCCCccHHHHHHHHhhcChhhhhhhcCCCCcccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCC
Q 017179 73 KKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSR 152 (376)
Q Consensus 73 ~~~~~~p~wl~~~~p~~~~~~~~~~~l~~~~L~tvce~A~cpn~~ec~~~~~~~~~tat~m~i~d~C~~~C~FC~v~~~r 152 (376)
....++|+|||+++|.|++|.+++.++++++|||||++|+|||+++||+++ ++|||++||+|+++|+||++++++
T Consensus 9 ~~~~~~p~w~~~~~~~~~~~~~~~~l~~~~~l~tv~~~A~~~~~~~~~~~~-----~~tfv~is~gC~~~C~FCa~~~g~ 83 (290)
T PRK12928 9 IPVERLPEWLRAPIGKASELETVQRLVKQRRLHTICEEARCPNRGECYAQG-----TATFLIMGSICTRRCAFCQVDKGR 83 (290)
T ss_pred CCCCCCCcceeecCCCChhHHHHHHHHHcCCHHHHHHHhCCCcccccCCCC-----EEEEEEecccccCcCCCCCccCCC
Confidence 345789999999999999999999999999999999999999999999887 999999999999999999999865
Q ss_pred CCCCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCC-ChHHHHHHHHc
Q 017179 153 APPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG-NNGCVREVAKS 231 (376)
Q Consensus 153 ~~~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g-~~e~l~~L~~a 231 (376)
+..++++||+++|+++.++|+++|+||||+++|++|+|.++|+++|+.|++..|.+.|++++|++.+ ..+.|..|+++
T Consensus 84 -~~~~~~eei~~~a~~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~~~I~~ltp~~~~~~~e~L~~l~~A 162 (290)
T PRK12928 84 -PMPLDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGTGIEVLTPDFWGGQRERLATVLAA 162 (290)
T ss_pred -CCCCCHHHHHHHHHHHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCCCEEEEeccccccCCHHHHHHHHHc
Confidence 5579999999999999999999999999999999988899999999999999999999999999987 78899999999
Q ss_pred CcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeec
Q 017179 232 GLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 311 (376)
Q Consensus 232 Gld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~q 311 (376)
|+++++||+||++++++.|+ +++++++|+++++.|++..|+ +.++|+||+|||||++|++++|++|+++++|++++||
T Consensus 163 g~~i~~hnlEt~~~vl~~m~-r~~t~e~~le~l~~ak~~gp~-i~~~s~iIvG~GET~ed~~etl~~Lrel~~d~v~i~~ 240 (290)
T PRK12928 163 KPDVFNHNLETVPRLQKAVR-RGADYQRSLDLLARAKELAPD-IPTKSGLMLGLGETEDEVIETLRDLRAVGCDRLTIGQ 240 (290)
T ss_pred CchhhcccCcCcHHHHHHhC-CCCCHHHHHHHHHHHHHhCCC-ceecccEEEeCCCCHHHHHHHHHHHHhcCCCEEEEEc
Confidence 99999999999999999999 689999999999999998775 9999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhccchhHhhhhhhcH
Q 017179 312 YMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKAGE 360 (376)
Q Consensus 312 Y~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrssy~a~~ 360 (376)
|+||+.+|+||.+|++|++|+.|+++|.+|||.+|+|||||||||||+|
T Consensus 241 Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~~~~p~~rssy~a~~ 289 (290)
T PRK12928 241 YLRPSLAHLPVQRYWTPEEFEALGQIARELGFSHVRSGPLVRSSYHAGE 289 (290)
T ss_pred CCCCCccCCceeeccCHHHHHHHHHHHHHcCCceeEecCcccccccCCC
Confidence 9999999999999999999999999999999999999999999999997
|
|
| >PRK05481 lipoyl synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-64 Score=485.55 Aligned_cols=281 Identities=55% Similarity=0.981 Sum_probs=265.7
Q ss_pred CCCCCcceeecCCCCccHHHHHHHHhhcChhhhhhhcCCCCcccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCCCC
Q 017179 75 PLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAP 154 (376)
Q Consensus 75 ~~~~p~wl~~~~p~~~~~~~~~~~l~~~~L~tvce~A~cpn~~ec~~~~~~~~~tat~m~i~d~C~~~C~FC~v~~~r~~ 154 (376)
..++|+|||+++|.|.+|.++..++++.+|+|||++|+|||+.+||+++ +++||+++|+|+++|+||+++..+ +
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~a~~~~~~~~~~~~-----~~~fi~is~GC~~~C~FC~i~~~r-~ 77 (289)
T PRK05481 4 VARKPDWLRVKLPTGEEYTEIKKLLRELGLHTVCEEASCPNIGECWSRG-----TATFMILGDICTRRCPFCDVATGR-P 77 (289)
T ss_pred CCCCCcceeecCCCChhHHHHHHHHHhCChHHHHHhhCCCcchhccCCC-----eEEEEEecccccCCCCCceeCCCC-C
Confidence 4569999999999999999999999999999999999999999999887 999999999999999999999877 4
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcc
Q 017179 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLN 234 (376)
Q Consensus 155 ~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (376)
.+++++||+++++++.+.|+++|+||||+++|+++.|..+|+++|+.|++..|++.|++++|++....+.+..++++|++
T Consensus 78 ~s~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d~~~~~~~~l~~Ll~~I~~~~p~irI~~l~~~~~~~~e~L~~l~~ag~~ 157 (289)
T PRK05481 78 LPLDPDEPERVAEAVARMGLKYVVITSVDRDDLPDGGAQHFAETIRAIRELNPGTTIEVLIPDFRGRMDALLTVLDARPD 157 (289)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEEeeCCCcccccHHHHHHHHHHHHhhCCCcEEEEEccCCCCCHHHHHHHHhcCcc
Confidence 56999999999999999999999999999888776667899999999999889999999999887677899999999999
Q ss_pred cccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCC
Q 017179 235 VFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMR 314 (376)
Q Consensus 235 ~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~ 314 (376)
+++|++|++++++++|+ |++++++|+++++.+++.+|+ +.++|+||+|||||+||++++|++|+++++|.+++|+|++
T Consensus 158 i~~~~~ets~~vlk~m~-r~~t~e~~le~i~~ar~~~pg-i~~~t~~IvGfGET~ed~~~tl~~lrel~~d~v~if~Ys~ 235 (289)
T PRK05481 158 VFNHNLETVPRLYKRVR-PGADYERSLELLKRAKELHPG-IPTKSGLMVGLGETDEEVLEVMDDLRAAGVDILTIGQYLQ 235 (289)
T ss_pred eeeccccChHHHHHHhC-CCCCHHHHHHHHHHHHHhCCC-CeEeeeeEEECCCCHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence 99999999999999999 699999999999999998875 9999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccCChHHHHHHHHHHHHHhhhhhccchhHhhhhhhcHHHH
Q 017179 315 PSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKAGEFYI 363 (376)
Q Consensus 315 P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrssy~a~~~~~ 363 (376)
|..++++|.++++++++++|++++.++||++|+|||+|||||+|++++.
T Consensus 236 pa~k~~~v~~~~k~~r~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 284 (289)
T PRK05481 236 PSRKHLPVERYVTPEEFDEYKEIALELGFLHVASGPLVRSSYHADEQAA 284 (289)
T ss_pred CccccCCCCCcCCHHHHHHHHHHHHHcCchheEecCccccchhhHHHHh
Confidence 9765889999999999999999999999999999999999999999643
|
|
| >PRK08444 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-31 Score=261.92 Aligned_cols=239 Identities=15% Similarity=0.248 Sum_probs=196.1
Q ss_pred ccHHHHHHHHhhcChhhhhhhcCCCCcccccCCCCCCccEEEEe-----eeCCccCCCCcCCCCCCCCC-C--CCCCchh
Q 017179 90 DKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIM-----ILGDTCTRGCRFCNVKTSRA-P--PPPDPDE 161 (376)
Q Consensus 90 ~~~~~~~~~l~~~~L~tvce~A~cpn~~ec~~~~~~~~~tat~m-----~i~d~C~~~C~FC~v~~~r~-~--~~l~~eE 161 (376)
-+.++...++. .+|..+++.|+-.+...+ |+ +++|. .++|.|..+|.||+|+...+ + ..+++||
T Consensus 13 ls~eeal~Ll~-~dl~~L~~~A~~vR~~~~--G~-----~Vt~~~n~~In~TN~C~~~C~FCaf~~~~~~~~~y~ls~ee 84 (353)
T PRK08444 13 LNQEEAVKLYD-LDLFTLGKYADKKRTKLH--GK-----KVYFNVNRHINPTNICADVCKFCAFSAHRKNPNPYTMSHEE 84 (353)
T ss_pred CCHHHHHHHhh-cCHHHHHHHHHHHHHHhc--CC-----EEEEEecCCcccccccccCCccCCCccCCCCCccccCCHHH
Confidence 34677777874 489999999987776532 44 66665 46999999999999987432 2 2389999
Q ss_pred HHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCC---------CCChHHHHHHHHcC
Q 017179 162 PTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF---------RGNNGCVREVAKSG 232 (376)
Q Consensus 162 i~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~---------~g~~e~l~~L~~aG 232 (376)
+++.|+++.+.|+++++|+||.+++++ .++|.++++.||+.+|++.|++++|.- ...+|.+..|+++|
T Consensus 85 I~~~a~~a~~~G~~ei~iv~G~~p~~~---~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAG 161 (353)
T PRK08444 85 ILEIVKNSVKRGIKEVHIVSAHNPNYG---YEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYG 161 (353)
T ss_pred HHHHHHHHHHCCCCEEEEeccCCCCCC---HHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 999999999999999999999887763 789999999999999999999977632 11478999999999
Q ss_pred ccccccc-ccc-hHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 233 LNVFAHN-IET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 233 ld~i~h~-lEt-v~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
+|+++|+ .|+ ++++++.|+|.+.+.++|+++++.|++ .|+.++|+||+|+|||++|++++|..||++|++.++|.
T Consensus 162 l~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~---~Gi~~~sg~l~G~gEt~edrv~hl~~Lr~Lq~~t~gf~ 238 (353)
T PRK08444 162 VDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHK---KGKMSNATMLFGHIENREHRIDHMLRLRDLQDKTGGFN 238 (353)
T ss_pred cccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHH---cCCCccceeEEecCCCHHHHHHHHHHHHHhccccCCce
Confidence 9999994 896 569999999767778999999999999 58999999999999999999999999999999987774
Q ss_pred cCCCCC---CCCCCCcccCChHHHHHHHHHHHHHhh
Q 017179 311 QYMRPS---KRHMPVSEYITPEAFERYRALGMEMGF 343 (376)
Q Consensus 311 qY~~P~---~~~~~v~~~v~pe~~~~l~~~a~~~gf 343 (376)
.| -|. ..++|+.....+...+.++.+|..+=+
T Consensus 239 ~f-Ip~~f~~~~t~l~~~~~~~~~e~Lr~iAi~Rl~ 273 (353)
T PRK08444 239 AF-IPLVYQRENNYLKVEKFPSSQEILKTIAISRIL 273 (353)
T ss_pred EE-EecccCCCCCcCCCCCCCCHHHHHHHHHHHHHh
Confidence 33 231 135676655456678888888887543
|
|
| >COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=257.78 Aligned_cols=213 Identities=18% Similarity=0.330 Sum_probs=175.3
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCC-Cccc--HHHHHHHHHHHHh
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDL-ADQG--SGHFAQTVRKLKE 204 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl-~d~g--~~~~~elvr~Ik~ 204 (376)
+.+|+.+++||+.+|+||++|..||.. +.++++|++.++.+++.|++||+|||+|-..| .|.+ ...|+++|+.|.+
T Consensus 144 ~~A~v~I~eGCn~~CtfCiiP~~RG~~rSr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~ 223 (437)
T COG0621 144 VRAFVKIQEGCNKFCTFCIIPYARGKERSRPPEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLLRELSK 223 (437)
T ss_pred eEEEEEhhcCcCCCCCeeeeeccCCCccCCCHHHHHHHHHHHHHCCCeEEEEEEEehhhccccCCCCccCHHHHHHHHhc
Confidence 899999999999999999999988755 69999999999999999999999999984333 2221 4569999999988
Q ss_pred hCCCcEEEE--ecCCCCCChHHHHHHHHcCccccccc---cc-chHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEE
Q 017179 205 LKPNMLIEA--LVPDFRGNNGCVREVAKSGLNVFAHN---IE-TVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTK 278 (376)
Q Consensus 205 ~~p~i~Ie~--l~pd~~g~~e~l~~L~~aGld~i~h~---lE-tv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tk 278 (376)
.....+|++ +.|.-. +++.++.++ .+..+++|- ++ .++++++.|+ |+++.++++++++.+++..|+ +.+.
T Consensus 224 I~G~~riR~~~~~P~~~-~d~lI~~~~-~~~kv~~~lHlPvQsGsd~ILk~M~-R~yt~e~~~~~i~k~R~~~Pd-~~i~ 299 (437)
T COG0621 224 IPGIERIRFGSSHPLEF-TDDLIEAIA-ETPKVCPHLHLPVQSGSDRILKRMK-RGYTVEEYLEIIEKLRAARPD-IAIS 299 (437)
T ss_pred CCCceEEEEecCCchhc-CHHHHHHHh-cCCcccccccCccccCCHHHHHHhC-CCcCHHHHHHHHHHHHHhCCC-ceEe
Confidence 432335554 555321 566666555 456888875 44 6789999999 999999999999999999998 9999
Q ss_pred EeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCC----CCCcccCChHHHHHHHHHHHHHhhhh
Q 017179 279 TSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRH----MPVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 279 t~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~----~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
|+||||| |||+|||.+||++++++++|.+++|+|+ ||+... .+|++.|+.++.++|++++.++...+
T Consensus 300 tDiIVGFPgETeedFe~tl~lv~e~~fd~~~~F~YSpRpGTpAa~~~~qvp~~vkkeR~~~L~~l~~~~~~~~ 372 (437)
T COG0621 300 TDIIVGFPGETEEDFEETLDLVEEVRFDRLHVFKYSPRPGTPAALMPDQVPEEVKKERLRRLQELQQQISAEF 372 (437)
T ss_pred ccEEEECCCCCHHHHHHHHHHHHHhCCCEEeeeecCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 9999999999999999999999999998 664222 24666677889999999988877654
|
|
| >PRK05927 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-30 Score=255.03 Aligned_cols=246 Identities=15% Similarity=0.211 Sum_probs=194.3
Q ss_pred CCCCccHHHHHHHHhhcChhhhhhhcCCCCcccccCCCCCCccEEEEee-----eCCccCCCCcCCCCCCCC-CCC--CC
Q 017179 86 IPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMI-----LGDTCTRGCRFCNVKTSR-APP--PP 157 (376)
Q Consensus 86 ~p~~~~~~~~~~~l~~~~L~tvce~A~cpn~~ec~~~~~~~~~tat~m~-----i~d~C~~~C~FC~v~~~r-~~~--~l 157 (376)
+|.....+++..++...+|..+++.|+-.+.. .++|. .++|++ ++|.|+.+|.||+++... .+. .+
T Consensus 3 ~~~~is~ee~l~L~~~~~l~~L~~~A~~iR~~-~~~G~-----~V~~i~n~~i~~Tn~C~~~C~fCaf~~~~~~~~~y~l 76 (350)
T PRK05927 3 LPARISFQEGLELFLYSPLEELQEHADSLRKQ-RYPQN-----TVTYVLDANPNYTNICKIDCTFCAFYRKPHSSDAYLL 76 (350)
T ss_pred CccCCCHHHHHHHhcCCCHHHHHHHHHHHHHH-HcCCC-----eEEEEcccCCccchhhhcCCccCCccCCCCCcccccc
Confidence 45556678899999888999999999877664 34344 677663 499999999999998742 222 38
Q ss_pred CchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCC-------CC--ChHHHHHH
Q 017179 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF-------RG--NNGCVREV 228 (376)
Q Consensus 158 ~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~-------~g--~~e~l~~L 228 (376)
+++|+++.++++.+.|+++++||||.+++. +.+++.++++.||+.+|++.+.+++|.- .| ..+.++.|
T Consensus 77 s~eei~~~a~~~~~~G~~~i~i~gG~~p~~---~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G~~~~e~l~~L 153 (350)
T PRK05927 77 SFDEFRSLMQRYVSAGVKTVLLQGGVHPQL---GIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSGISTEQALERL 153 (350)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCCCC---CHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 999999999999999999999999988764 3899999999999999999887776621 12 58999999
Q ss_pred HHcCcccccc-cccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcE
Q 017179 229 AKSGLNVFAH-NIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDV 306 (376)
Q Consensus 229 ~~aGld~i~h-~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~ 306 (376)
+++|++.++| |+|+.+ .+++.++|.+.+.++|+++++.|++ .|+.++|+||+|+|||++|++++|..||++|.++
T Consensus 154 k~aGl~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~~---lGi~~~sg~l~G~gEt~e~ri~~l~~Lr~lqd~~ 230 (350)
T PRK05927 154 WDAGQRTIPGGGAEILSERVRKIISPKKMGPDGWIQFHKLAHR---LGFRSTATMMFGHVESPEDILLHLQTLRDAQDEN 230 (350)
T ss_pred HHcCcccCCCCCchhCCHHHhhccCCCCCCHHHHHHHHHHHHH---cCCCcCceeEEeeCCCHHHHHHHHHHHHHhhHhh
Confidence 9999999999 899876 7777777656678999999999999 5899999999999999999999999999999654
Q ss_pred EEeecCC--CCCCCCCCCcccC--ChHHHHHHHHHHHHHhh
Q 017179 307 MTFGQYM--RPSKRHMPVSEYI--TPEAFERYRALGMEMGF 343 (376)
Q Consensus 307 v~~~qY~--~P~~~~~~v~~~v--~pe~~~~l~~~a~~~gf 343 (376)
-+|..|+ .|...++|+.... .+...+.++.+|..+=+
T Consensus 231 ~gf~~fIp~~~~~~~tpl~~~~~~~~s~~e~Lr~iAv~Rl~ 271 (350)
T PRK05927 231 PGFYSFIPWSYKPGNTALGRRVPHQASPELYYRILAVARIF 271 (350)
T ss_pred CCeeeeeecCcCCCCCccccCCCCCCCHHHHHHHHHHHHHh
Confidence 4443332 1112355654321 24567778888877543
|
|
| >TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=251.52 Aligned_cols=237 Identities=19% Similarity=0.277 Sum_probs=192.9
Q ss_pred ccHHHHHHHHhhcChhhhhhhcCCCCcccccCCCCCCccEEEE-----eeeCCccCCCCcCCCCCCCCC-CC--CCCchh
Q 017179 90 DKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATI-----MILGDTCTRGCRFCNVKTSRA-PP--PPDPDE 161 (376)
Q Consensus 90 ~~~~~~~~~l~~~~L~tvce~A~cpn~~ec~~~~~~~~~tat~-----m~i~d~C~~~C~FC~v~~~r~-~~--~l~~eE 161 (376)
-..++...+|...++..+++.|+-.+..- +| + .++| +..+|+|+++|+||+++...+ +. .+++||
T Consensus 11 ls~~e~~~L~~~~~~~~L~~~A~~vr~~~-~g-~-----~v~~~~~~~in~Tn~C~~~C~FCa~~~~~~~~~~y~l~~ee 83 (351)
T TIGR03700 11 LSFEDGLFLYASDDLLTLGELAALVRERK-HG-D-----KVYFNVNRHLNYTNICVNGCAFCAFQRERGEPGAYAMSLEE 83 (351)
T ss_pred CCHHHHHHHcCCCcHHHHHHHHHHHHHHh-cC-C-----eEEEeccCCcccccccccCCccCceeCCCCCcccCCCCHHH
Confidence 34678888888888999999998776543 33 3 4555 446999999999999987432 22 389999
Q ss_pred HHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCC-------CCC--ChHHHHHHHHcC
Q 017179 162 PTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPD-------FRG--NNGCVREVAKSG 232 (376)
Q Consensus 162 i~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd-------~~g--~~e~l~~L~~aG 232 (376)
|++.++++.+.|+++|+|+||++++++ .+++.++++.|++.+|++.+++++|. ..| +++.++.|+++|
T Consensus 84 I~~~a~~~~~~G~~~v~l~~G~~p~~~---~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~LkeAG 160 (351)
T TIGR03700 84 IVARVKEAYAPGATEVHIVGGLHPNLP---FEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDELKEAG 160 (351)
T ss_pred HHHHHHHHHHCCCcEEEEecCCCCCCC---HHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 999999999999999999999887654 78999999999999999999987763 112 478899999999
Q ss_pred cccccc-cccc-hHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 233 LNVFAH-NIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 233 ld~i~h-~lEt-v~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
+|.++| ++|+ .+++++++++.+.++++|+++++.|++ .|+.++++||+|+|||++|+++++..|++++++..+|.
T Consensus 161 ld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~---~Gi~~~sg~i~GlgEt~edrv~~l~~Lr~l~~~~~~f~ 237 (351)
T TIGR03700 161 LDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHE---LGLKTNATMLYGHIETPAHRVDHMLRLRELQDETGGFQ 237 (351)
T ss_pred CCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHH---cCCCcceEEEeeCCCCHHHHHHHHHHHHHhhHhhCCce
Confidence 999997 6998 469999999656788999999999999 58999999999999999999999999999999653331
Q ss_pred -----cCCCCCCCCCCCccc--CChHHHHHHHHHHHHHh
Q 017179 311 -----QYMRPSKRHMPVSEY--ITPEAFERYRALGMEMG 342 (376)
Q Consensus 311 -----qY~~P~~~~~~v~~~--v~pe~~~~l~~~a~~~g 342 (376)
+|. | .++|+... ..+...+.++.+|..+=
T Consensus 238 ~fiP~~f~-~--~~tpl~~~~~~~~~~~e~lr~iA~~Rl 273 (351)
T TIGR03700 238 AFIPLAFQ-P--DNNRLNRLLAKGPTGLDDLKTLAVSRL 273 (351)
T ss_pred EEEeeccc-C--CCCcccCCCCCCCCHHHHHHHHHHHHH
Confidence 333 3 46666654 45677888999888753
|
Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein. |
| >PRK05926 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-28 Score=244.83 Aligned_cols=240 Identities=15% Similarity=0.176 Sum_probs=191.6
Q ss_pred ccHHHHHHHHh---hcChhhhhhhcCCCCcccccCCCCCCccEEEEee-----eCCccCCCCcCCCCCCCCC-CC--CCC
Q 017179 90 DKYVQIKKKLR---ELKLHTVCEEAKCPNLGECWSGGETGTATATIMI-----LGDTCTRGCRFCNVKTSRA-PP--PPD 158 (376)
Q Consensus 90 ~~~~~~~~~l~---~~~L~tvce~A~cpn~~ec~~~~~~~~~tat~m~-----i~d~C~~~C~FC~v~~~r~-~~--~l~ 158 (376)
-..++...++. ..+|..+++.|+..+..- + |+ +++|.. .+|.|..+|.||++....+ +. .++
T Consensus 28 ls~eeal~Ll~~~~~~~l~~L~~~A~~iR~~~-~-G~-----~V~~~~~~nin~Tn~C~~dC~FCaf~~~~~~~~~~~ls 100 (370)
T PRK05926 28 LSEEDALQLLLLTDAEDQRALWSFADLIRANR-V-GD-----TVYYSSTLYLYPTNFCQFNCTFCSFYAKPGDPKGWFYT 100 (370)
T ss_pred CCHHHHHHHHhCCCchHHHHHHHHHHHHHHHh-c-CC-----eEEEEEeeeeecCCCCCCCCCccccccCCCCcccccCC
Confidence 34677777873 357899999998877653 3 43 566542 4999999999999886432 22 389
Q ss_pred chhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCC-------C--CCChHHHHHHH
Q 017179 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPD-------F--RGNNGCVREVA 229 (376)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd-------~--~g~~e~l~~L~ 229 (376)
+|||++.|+++ ..|+++++|+||.++++. .+++.++++.|++.+|++.+++++|. . ....+.++.|+
T Consensus 101 ~eeI~~~a~~a-~~G~~ei~iv~G~~p~~~---~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~~~~~e~l~~Lk 176 (370)
T PRK05926 101 PDQLVQSIKEN-PSPITETHIVAGCFPSCN---LAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDNLPVKEVLQTLK 176 (370)
T ss_pred HHHHHHHHHHH-hcCCCEEEEEeCcCCCCC---HHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcCCCHHHHHHHHH
Confidence 99999999988 699999999999887643 78999999999999999999988763 0 11478899999
Q ss_pred HcCccccccc-ccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEE
Q 017179 230 KSGLNVFAHN-IETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVM 307 (376)
Q Consensus 230 ~aGld~i~h~-lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v 307 (376)
++|++.|+|+ +|+. +++++.++|.+.++++|+++++.||+ .|+.++++||+|+|||++|+++++..||++|++.+
T Consensus 177 eAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~---~Gi~~~sgmi~G~gEt~edrv~~l~~Lr~Lq~~t~ 253 (370)
T PRK05926 177 IAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHS---LGIPSNATMLCYHRETPEDIVTHMSKLRALQDKTS 253 (370)
T ss_pred HcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHH---cCCcccCceEEeCCCCHHHHHHHHHHHHhcCCccC
Confidence 9999999997 9976 58888899778899999999999999 58999999999999999999999999999999987
Q ss_pred EeecCC----CCCCCCCCCcc----cCChHHHHHHHHHHHHHhhhh
Q 017179 308 TFGQYM----RPSKRHMPVSE----YITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 308 ~~~qY~----~P~~~~~~v~~----~v~pe~~~~l~~~a~~~gf~~ 345 (376)
+|..|+ +| .++++.. .......+.|+.+|.++=|+-
T Consensus 254 gf~~fIp~~f~~--~~t~l~~~~~~~~~~~~~~~lr~~AvaRl~l~ 297 (370)
T PRK05926 254 GFKNFILLKFAS--ENNALGKRLRKMGSRHSIPPASIIAVARLFLD 297 (370)
T ss_pred CeeeeEecccCC--CCCcccccccccCCCChHHHHHHHHHHHHhcC
Confidence 777665 35 2344322 112334567888888875543
|
|
| >PRK08445 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-28 Score=240.33 Aligned_cols=237 Identities=14% Similarity=0.208 Sum_probs=190.9
Q ss_pred HHHHHHHHhhcChhhhhhhcCCCCcccccCCCCCCccEEEEee-----eCCccCCCCcCCCCCCCC-CCC--CCCchhHH
Q 017179 92 YVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMI-----LGDTCTRGCRFCNVKTSR-APP--PPDPDEPT 163 (376)
Q Consensus 92 ~~~~~~~l~~~~L~tvce~A~cpn~~ec~~~~~~~~~tat~m~-----i~d~C~~~C~FC~v~~~r-~~~--~l~~eEi~ 163 (376)
.++...+|...+|..+++.|+-.+.. .+|++ ..+|++ .+++|..+|+||+++... .+. .+++|||+
T Consensus 6 ~~e~l~Ll~~~~l~~L~~~A~~vr~~-~~g~~-----v~~~~~~~~in~Tn~C~~~C~FCa~~~~~~~~~~y~l~~eeI~ 79 (348)
T PRK08445 6 KEEALDLIKNAPLKELGEMALERKQE-LHPEK-----ITTFIVDRNINYTNICWVDCKFCAFYRHLKEDDAYILSFEEID 79 (348)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHH-HcCCc-----EEEEecccccccccccccCCccCCCccCCCCCCCeeCCHHHHH
Confidence 56777888888999999999877664 33443 666654 599999999999999742 222 37999999
Q ss_pred HHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCC---CC----C--ChHHHHHHHHcCcc
Q 017179 164 NVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPD---FR----G--NNGCVREVAKSGLN 234 (376)
Q Consensus 164 ~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd---~~----g--~~e~l~~L~~aGld 234 (376)
+.++++.+.|.++|+++||+.++++ .+++.++++.|++.+|++.+.++++. +. + .+|.+++|+++|++
T Consensus 80 ~~~~~a~~~g~~~i~~~gg~~~~~~---~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAGl~ 156 (348)
T PRK08445 80 KKIEELLAIGGTQILFQGGVHPKLK---IEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERLQAKGLS 156 (348)
T ss_pred HHHHHHHHcCCCEEEEecCCCCCCC---HHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHcCCC
Confidence 9999999999999999998877654 78999999999999999999877652 11 1 37999999999999
Q ss_pred cccc-cccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeec-
Q 017179 235 VFAH-NIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ- 311 (376)
Q Consensus 235 ~i~h-~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~q- 311 (376)
.++| ++|+.+ ++++.++|.+.+.++|+++++.||+ .|+.++++||+|+|||++|+++++..|++++++..+|..
T Consensus 157 ~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~---~Gi~~~sg~i~G~~Et~edr~~~l~~lreLq~~~~g~~~f 233 (348)
T PRK08445 157 SIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHL---IGMKSTATMMFGTVENDEEIIEHWERIRDLQDETGGFRAF 233 (348)
T ss_pred CCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHH---cCCeeeeEEEecCCCCHHHHHHHHHHHHHHHHHhCCeeEE
Confidence 9987 599764 9999998789999999999999999 589999999999999999999999999999987543322
Q ss_pred ---CCCCCCCCCCCccc----CChHHHHHHHHHHHHHh
Q 017179 312 ---YMRPSKRHMPVSEY----ITPEAFERYRALGMEMG 342 (376)
Q Consensus 312 ---Y~~P~~~~~~v~~~----v~pe~~~~l~~~a~~~g 342 (376)
.++| .++|+... ..+...+.|+.+|..+=
T Consensus 234 i~~~~~p--~~tpl~~~~~~~~~~~~~e~Lr~iAv~Rl 269 (348)
T PRK08445 234 ILWSFQP--DNTPLKEEIPEIKKQSSNRYLRLLAVSRL 269 (348)
T ss_pred eccccCC--CCCcccccCCCCCCCCHHHHHHHHHHHHH
Confidence 3355 45665431 12445677888887753
|
|
| >PRK15108 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-27 Score=235.45 Aligned_cols=234 Identities=15% Similarity=0.254 Sum_probs=182.1
Q ss_pred HHHHHHHHhhcChhhhhhhcCCCCcccccCCCCCCccEEEEeee-CCccCCCCcCCCCCCCC--C-C-CC-CCchhHHHH
Q 017179 92 YVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMIL-GDTCTRGCRFCNVKTSR--A-P-PP-PDPDEPTNV 165 (376)
Q Consensus 92 ~~~~~~~l~~~~L~tvce~A~cpn~~ec~~~~~~~~~tat~m~i-~d~C~~~C~FC~v~~~r--~-~-~~-l~~eEi~~~ 165 (376)
.++...++. .+|..++..|+-.+.. .|+++ .....+++.+ +|+|+.+|.||+++... + + .. +++|||++.
T Consensus 9 ~~e~~~l~~-~~l~~l~~~A~~ir~~-~fg~~--~v~l~~i~~~~Tn~C~~~C~yC~~~~~~~~~~~~~~~ls~eEI~~~ 84 (345)
T PRK15108 9 LSQVTELFE-KPLLELLFEAQQVHRQ-HFDPR--QVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLES 84 (345)
T ss_pred HHHHHHHHc-ccHHHHHHHHHHHHHH-hcCCC--EEEEEEeEEEECCCcCCCCcCCCCcccCCCCCCcccCCCHHHHHHH
Confidence 567777774 4899999988877654 34432 1112334444 99999999999998532 1 1 22 899999999
Q ss_pred HHHHHHCCCcEEEEEeee-CCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccchH
Q 017179 166 AEAIASWGLDYVVITSVD-RDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE 244 (376)
Q Consensus 166 a~al~~~G~~eIvLTsg~-r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~ 244 (376)
|+.+.+.|++++++.++. .+ ++...+++.++++.||+. ++.+.+..+.. +.+.++.|+++|+|.|+|++||++
T Consensus 85 a~~~~~~G~~~i~i~~~g~~p--~~~~~e~i~~~i~~ik~~--~i~v~~s~G~l--s~e~l~~LkeAGld~~n~~leT~p 158 (345)
T PRK15108 85 ARKAKAAGSTRFCMGAAWKNP--HERDMPYLEQMVQGVKAM--GLETCMTLGTL--SESQAQRLANAGLDYYNHNLDTSP 158 (345)
T ss_pred HHHHHHcCCCEEEEEecCCCC--CcchHHHHHHHHHHHHhC--CCEEEEeCCcC--CHHHHHHHHHcCCCEEeeccccCh
Confidence 999999999999986553 33 222378999999999864 35554444444 689999999999999999999988
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHc--CCcEEEeecCCCCCCCCCCC
Q 017179 245 ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAA--GVDVMTFGQYMRPSKRHMPV 322 (376)
Q Consensus 245 ~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel--~vd~v~~~qY~~P~~~~~~v 322 (376)
+.|++++ .+++|++|+++++.+++ .|+.+++++|+|+|||++|+++++..|+++ +++.|++ +++.| ..++|+
T Consensus 159 ~~f~~I~-~~~~~~~rl~~i~~a~~---~G~~v~sg~i~GlgEt~ed~v~~~~~l~~l~~~~~~ip~-~~~~P-~~gTpl 232 (345)
T PRK15108 159 EFYGNII-TTRTYQERLDTLEKVRD---AGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPI-NMLVK-VKGTPL 232 (345)
T ss_pred HhcCCCC-CCCCHHHHHHHHHHHHH---cCCceeeEEEEeCCCCHHHHHHHHHHHHhccCCCCEEEe-CCccC-CCCCCC
Confidence 9999999 58899999999999999 589999999999999999999999999999 5679999 56677 467877
Q ss_pred cccCChHHHHHHHHHHHHH
Q 017179 323 SEYITPEAFERYRALGMEM 341 (376)
Q Consensus 323 ~~~v~pe~~~~l~~~a~~~ 341 (376)
.........+.++.+|..+
T Consensus 233 ~~~~~~~~~e~lr~iAi~R 251 (345)
T PRK15108 233 ADNDDVDAFDFIRTIAVAR 251 (345)
T ss_pred CCCCCCCHHHHHHHHHHHH
Confidence 6543334567777777654
|
|
| >PRK08508 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-27 Score=229.38 Aligned_cols=197 Identities=17% Similarity=0.247 Sum_probs=165.4
Q ss_pred CCccCCCCcCCCCCCC-CC-C--CC-CCchhHHHHHHHHHHCCCcEEEEE-eeeCCCCCcccHHHHHHHHHHHHhhCCCc
Q 017179 136 GDTCTRGCRFCNVKTS-RA-P--PP-PDPDEPTNVAEAIASWGLDYVVIT-SVDRDDLADQGSGHFAQTVRKLKELKPNM 209 (376)
Q Consensus 136 ~d~C~~~C~FC~v~~~-r~-~--~~-l~~eEi~~~a~al~~~G~~eIvLT-sg~r~dl~d~g~~~~~elvr~Ik~~~p~i 209 (376)
+.+|+.+|.||+++.. .. . .. +++||+++.|+.+.+.|+++++++ +|... .+...+++.++++.||+..|++
T Consensus 14 s~gC~~~C~FCa~~~~~~~~~~~y~~~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~--~~~~~e~~~ei~~~ik~~~p~l 91 (279)
T PRK08508 14 SGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKANGALGFCLVTSGRGL--DDKKLEYVAEAAKAVKKEVPGL 91 (279)
T ss_pred cCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEeccCCC--CcccHHHHHHHHHHHHhhCCCc
Confidence 6899999999999863 21 1 23 799999999999999999999884 66532 2234789999999999988888
Q ss_pred EEEEecCCCCCChHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCH
Q 017179 210 LIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETP 289 (376)
Q Consensus 210 ~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ 289 (376)
.+.++.+.. +.+.++.|+++|+|.++|++||.+++|+.++ .+++|++++++++.|++ .|+.+++++|+|+|||+
T Consensus 92 ~i~~s~G~~--~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~-~~~~~~~~l~~i~~a~~---~Gi~v~sg~I~GlGEt~ 165 (279)
T PRK08508 92 HLIACNGTA--SVEQLKELKKAGIFSYNHNLETSKEFFPKIC-TTHTWEERFQTCENAKE---AGLGLCSGGIFGLGESW 165 (279)
T ss_pred EEEecCCCC--CHHHHHHHHHcCCCEEcccccchHHHhcCCC-CCCCHHHHHHHHHHHHH---cCCeecceeEEecCCCH
Confidence 887666655 7999999999999999999999999999999 58999999999999999 58999999999999999
Q ss_pred HHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhh
Q 017179 290 DQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGF 343 (376)
Q Consensus 290 ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf 343 (376)
||+++++.+|++++++.|++ +|+.| ..++|+... .....+.++.+|..+-+
T Consensus 166 ed~~~~l~~lr~L~~~svpl-~~~~p-~~~t~~~~~-~~~~~~~lr~iAv~Rl~ 216 (279)
T PRK08508 166 EDRISFLKSLASLSPHSTPI-NFFIP-NPALPLKAP-TLSADEALEIVRLAKEA 216 (279)
T ss_pred HHHHHHHHHHHcCCCCEEee-CCcCC-CCCCCCCCC-CCCHHHHHHHHHHHHHH
Confidence 99999999999999999999 67778 567776532 23456777777776543
|
|
| >PLN02389 biotin synthase | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.9e-27 Score=233.83 Aligned_cols=234 Identities=14% Similarity=0.231 Sum_probs=185.8
Q ss_pred cHHHHHHHHhhcChhhhhhhcCCCCcccccCCCCCCccEEEE---eee-CCccCCCCcCCCCCCCC--CC--C-CCCchh
Q 017179 91 KYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATI---MIL-GDTCTRGCRFCNVKTSR--AP--P-PPDPDE 161 (376)
Q Consensus 91 ~~~~~~~~l~~~~L~tvce~A~cpn~~ec~~~~~~~~~tat~---m~i-~d~C~~~C~FC~v~~~r--~~--~-~l~~eE 161 (376)
.++++..++.. +|..++..|.-.+...+ +++ .++| +.+ +++|+.+|.||+++... +. . .+++||
T Consensus 48 t~~e~l~L~~~-~l~~l~~~A~~vr~~~~-~~~-----~v~~~~i~n~~T~~C~~~C~fCaqs~~~~~~~~~~~~Ls~Ee 120 (379)
T PLN02389 48 TRDEIKEVYDS-PLLDLLFHGAQVHRHAH-DPR-----EVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKAQKLMSKDD 120 (379)
T ss_pred CHHHHHHHHcC-cHHHHHHHHHHHHHHhc-CCC-----EEEEEEEEEeccCCcCcCCCCCCCcccCCCCCcccccCCHHH
Confidence 47788888854 89999999987777544 332 3443 334 89999999999998632 11 1 389999
Q ss_pred HHHHHHHHHHCCCcEEEEEeeeCCCC-CcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccc
Q 017179 162 PTNVAEAIASWGLDYVVITSVDRDDL-ADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNI 240 (376)
Q Consensus 162 i~~~a~al~~~G~~eIvLTsg~r~dl-~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~l 240 (376)
|++.|+++.+.|+++++|++.-+... ++...+++.++++.||+. ++.|.+..+.. +.+.++.|+++|+|.|+|++
T Consensus 121 Il~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~--~l~i~~s~G~l--~~E~l~~LkeAGld~~~~~L 196 (379)
T PLN02389 121 VLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGM--GMEVCCTLGML--EKEQAAQLKEAGLTAYNHNL 196 (379)
T ss_pred HHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcC--CcEEEECCCCC--CHHHHHHHHHcCCCEEEeee
Confidence 99999999999999999864322211 112367899999999864 35555555544 78999999999999999999
Q ss_pred cchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHc--CCcEEEeecCCCCCCC
Q 017179 241 ETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAA--GVDVMTFGQYMRPSKR 318 (376)
Q Consensus 241 Etv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel--~vd~v~~~qY~~P~~~ 318 (376)
||++++|++++ .+++|++|+++++.|++ .|+.+++++|+|+|||++|+++++..|+++ +++.+++ +++.| .+
T Consensus 197 eTs~~~y~~i~-~~~s~e~rl~ti~~a~~---~Gi~v~sg~IiGlgEt~edrv~~l~~Lr~L~~~~~~v~l-~~l~P-~~ 270 (379)
T PLN02389 197 DTSREYYPNVI-TTRSYDDRLETLEAVRE---AGISVCSGGIIGLGEAEEDRVGLLHTLATLPEHPESVPI-NALVA-VK 270 (379)
T ss_pred cCChHHhCCcC-CCCCHHHHHHHHHHHHH---cCCeEeEEEEECCCCCHHHHHHHHHHHHhcccCCcEEec-cccee-cC
Confidence 99889999999 47899999999999999 589999999999999999999999999999 5789999 56778 46
Q ss_pred CCCCcccCChHHHHHHHHHHHHH
Q 017179 319 HMPVSEYITPEAFERYRALGMEM 341 (376)
Q Consensus 319 ~~~v~~~v~pe~~~~l~~~a~~~ 341 (376)
++|+.....+...+.++.+|..+
T Consensus 271 GTpL~~~~~~s~~e~lr~iAi~R 293 (379)
T PLN02389 271 GTPLEDQKPVEIWEMVRMIATAR 293 (379)
T ss_pred CCcCCCCCCCCHHHHHHHHHHHH
Confidence 88887655556677777777764
|
|
| >COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.9e-27 Score=229.71 Aligned_cols=212 Identities=17% Similarity=0.297 Sum_probs=174.8
Q ss_pred EEEEeeeCCc-cCCCCcCCCCCCCC-CCC----CCCchhHHHHHHHHHHCC-CcEEEEEeeeCCCCCcccHHHHHHHHHH
Q 017179 129 TATIMILGDT-CTRGCRFCNVKTSR-APP----PPDPDEPTNVAEAIASWG-LDYVVITSVDRDDLADQGSGHFAQTVRK 201 (376)
Q Consensus 129 tat~m~i~d~-C~~~C~FC~v~~~r-~~~----~l~~eEi~~~a~al~~~G-~~eIvLTsg~r~dl~d~g~~~~~elvr~ 201 (376)
..++|.+.++ |+.+|.||+++... .+. .+++|||++.|+++++.| .+++.++||.. ...+ ..++.++++.
T Consensus 50 l~~ii~iktg~c~edC~yC~qS~~~~~~~~~~~l~~~eeIle~Ak~ak~~Ga~r~c~~aagr~-~~~~--~~~i~~~v~~ 126 (335)
T COG0502 50 LSTLISIKTGCCPEDCAYCSQSARYKTGVKARKLMEVEEILEAAKKAKAAGATRFCMGAAGRG-PGRD--MEEVVEAIKA 126 (335)
T ss_pred EEEEEEeecCCCCCCCCCccccccCcCCCchhhcCCHHHHHHHHHHHHHcCCceEEEEEeccC-CCcc--HHHHHHHHHH
Confidence 4445555444 59999999999632 221 289999999999999999 57777787754 1122 6789999999
Q ss_pred HHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE
Q 017179 202 LKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI 281 (376)
Q Consensus 202 Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~i 281 (376)
||+... +.+.+..+.. +.+.++.|+++|+|.|+||+||++++|+.|+ .+++|++++++++.+++ .|+.+++++
T Consensus 127 Vk~~~~-le~c~slG~l--~~eq~~~L~~aGvd~ynhNLeTs~~~y~~I~-tt~t~edR~~tl~~vk~---~Gi~vcsGg 199 (335)
T COG0502 127 VKEELG-LEVCASLGML--TEEQAEKLADAGVDRYNHNLETSPEFYENII-TTRTYEDRLNTLENVRE---AGIEVCSGG 199 (335)
T ss_pred HHHhcC-cHHhhccCCC--CHHHHHHHHHcChhheecccccCHHHHcccC-CCCCHHHHHHHHHHHHH---cCCccccce
Confidence 997664 7777777766 8999999999999999999999999999999 59999999999999999 589999999
Q ss_pred EEecCCCHHHHHHHHHHHHHcC-CcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhccchhHhhh
Q 017179 282 MLGCGETPDQVVSTMEKVRAAG-VDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSS 355 (376)
Q Consensus 282 mvGlGET~ee~~e~L~~Lrel~-vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrss 355 (376)
|||+|||.+|+++++..|++++ +|.||| ++|.| ..++|+.+....+-++.++.+|.. +.+..--++|.|
T Consensus 200 I~GlGEs~eDri~~l~~L~~l~~pdsVPI-n~l~P-~~GTPle~~~~~~~~e~lk~IA~~---Ri~~P~~~Ir~s 269 (335)
T COG0502 200 IVGLGETVEDRAELLLELANLPTPDSVPI-NFLNP-IPGTPLENAKPLDPFEFLKTIAVA---RIIMPKSMIRLS 269 (335)
T ss_pred EecCCCCHHHHHHHHHHHHhCCCCCeeee-eeecC-CCCCccccCCCCCHHHHHHHHHHH---HHHCCcceeEcc
Confidence 9999999999999999999999 999999 77788 579999976566778889888875 344333344444
|
|
| >PRK07360 FO synthase subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=232.29 Aligned_cols=235 Identities=15% Similarity=0.237 Sum_probs=181.7
Q ss_pred cHHHHHHHHhhcC---hhhhhhhcCCCCcccccCCCCCCccEEEEe-----eeCCccCCCCcCCCCCCCCCCC---CCCc
Q 017179 91 KYVQIKKKLRELK---LHTVCEEAKCPNLGECWSGGETGTATATIM-----ILGDTCTRGCRFCNVKTSRAPP---PPDP 159 (376)
Q Consensus 91 ~~~~~~~~l~~~~---L~tvce~A~cpn~~ec~~~~~~~~~tat~m-----~i~d~C~~~C~FC~v~~~r~~~---~l~~ 159 (376)
+.+++..+|...+ |..+++.|+-.+... + |+ .++|. .++|.|+.+|.||++....+.. .+++
T Consensus 21 s~~e~~~Ll~~~~~~~l~~L~~~A~~ir~~~-~-G~-----~v~~~~~~~i~~Tn~C~~~C~fC~~~~~~~~~~~y~ls~ 93 (371)
T PRK07360 21 SKEDALELLETTEPRRIFEILELADRLRKEQ-V-GD-----TVTYVVNRNINFTNICEGHCGFCAFRRDEGDHGAFWLTI 93 (371)
T ss_pred CHHHHHHHhcCCChHHHHHHHHHHHHHHHHh-c-CC-----eEEEEeccCcccchhhhcCCccCCcccCCCCCCCeeCCH
Confidence 4677777776654 788888887665542 3 33 56663 3499999999999998753222 3899
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecC----------CCCCChHHHHHHH
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVP----------DFRGNNGCVREVA 229 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~p----------d~~g~~e~l~~L~ 229 (376)
|||++.|+++.+.|+++++||||.+++..+ .++++++++.||+.+|++.+.+++| .. ...+.++.|+
T Consensus 94 eeI~~~a~~a~~~G~~~i~l~~G~~p~~~~--~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~-~~~e~l~~Lk 170 (371)
T PRK07360 94 AEILEKAAEAVKRGATEVCIQGGLHPAADS--LEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGL-SYEEVLKALK 170 (371)
T ss_pred HHHHHHHHHHHhCCCCEEEEccCCCCCCCc--HHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCC-CHHHHHHHHH
Confidence 999999999999999999999998776653 6889999999999889999988754 12 1578899999
Q ss_pred HcCccccccc-ccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEE
Q 017179 230 KSGLNVFAHN-IETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVM 307 (376)
Q Consensus 230 ~aGld~i~h~-lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v 307 (376)
+||+|.++.. .|.. +++++.++|.+.++++|+++++.|++ .|+.+++++|+|+|||++|+++++..|++++++..
T Consensus 171 eAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~---~Gl~~~sg~i~G~gEt~edrv~~l~~lr~l~~~~~ 247 (371)
T PRK07360 171 DAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHK---LGLPTTSTMMYGHVETPEHRIDHLLILREIQQETG 247 (371)
T ss_pred HcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHH---cCCCceeeEEeeCCCCHHHHHHHHHHHHHhchhhC
Confidence 9999999632 4433 47777888667799999999999999 58999999999999999999999999999999764
Q ss_pred Eee-----cCCCCCCCCCCCcccC----ChHHHHHHHHHHHHH
Q 017179 308 TFG-----QYMRPSKRHMPVSEYI----TPEAFERYRALGMEM 341 (376)
Q Consensus 308 ~~~-----qY~~P~~~~~~v~~~v----~pe~~~~l~~~a~~~ 341 (376)
.|. +|+. .++|+.... .+...+.++.+|..+
T Consensus 248 g~~~fIp~~f~~---~~Tpl~~~~~~~~~~~~~~~lr~iAi~R 287 (371)
T PRK07360 248 GITEFVPLPFVH---ENAPLYERGRVKGGAPGLEDLLLYAVSR 287 (371)
T ss_pred CeeEEEeccccC---CCCccccccccCCCCCHHHHHHHHHHHH
Confidence 443 3332 356654431 123455588888764
|
|
| >COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=231.11 Aligned_cols=241 Identities=18% Similarity=0.262 Sum_probs=192.1
Q ss_pred cHHHHHHHHhhcChhhhhhhcCCCCcccccCCCCCCccEEEEe-----eeCCccCCCCcCCCCCCCCCCC---CCCchhH
Q 017179 91 KYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIM-----ILGDTCTRGCRFCNVKTSRAPP---PPDPDEP 162 (376)
Q Consensus 91 ~~~~~~~~l~~~~L~tvce~A~cpn~~ec~~~~~~~~~tat~m-----~i~d~C~~~C~FC~v~~~r~~~---~l~~eEi 162 (376)
...+...+|...++.++.+.|.-.+...-- +. ++||+ .+||.|.++|.||+|.+..+.. .|++|||
T Consensus 22 ~~~d~~~Ll~~~~~~~l~~~A~~~r~~~~~-~~-----~vtyv~n~~in~TN~C~~~C~fCaF~~~~~~~~~y~Ls~eeI 95 (370)
T COG1060 22 TREDALALLSPADLEELEELADKARRRKRV-GD-----GVTYVVNRNINYTNICVNDCTFCAFYRKPGDPKAYTLSPEEI 95 (370)
T ss_pred CHHHHHHHhccCcHHHHHHHHHHHHHhhcc-CC-----cEEEEEeecCCcchhhcCCCCccccccCCCCccccccCHHHH
Confidence 467788888888888888888777633222 22 56665 4699999999999999864222 3999999
Q ss_pred HHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCC-C--------CCChHHHHHHHHcCc
Q 017179 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPD-F--------RGNNGCVREVAKSGL 233 (376)
Q Consensus 163 ~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd-~--------~g~~e~l~~L~~aGl 233 (376)
.+.++++.+.|+++|+|+||.++++. .++|.++++.||+.+|++.|.++++. + ....|.+++|+++|+
T Consensus 96 ~~~~~~~~~~G~~Evli~gG~~p~~~---~~y~~~~~~~ik~~~p~~~i~a~s~~ei~~~~~~~~~s~~E~l~~Lk~aGl 172 (370)
T COG1060 96 LEEVREAVKRGITEVLIVGGEHPELS---LEYYEELFRTIKEEFPDLHIHALSAGEILFLAREGGLSYEEVLKRLKEAGL 172 (370)
T ss_pred HHHHHHHHHcCCeEEEEecCcCCCcc---hHHHHHHHHHHHHhCcchhhcccCHHHhHHHHhccCCCHHHHHHHHHHcCC
Confidence 99999999999999999999998775 56999999999999999999999873 2 113778999999999
Q ss_pred ccccccccc--hHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCc------
Q 017179 234 NVFAHNIET--VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVD------ 305 (376)
Q Consensus 234 d~i~h~lEt--v~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd------ 305 (376)
|.++...++ ++++.+.++|++.++++||++++.|++ .||+++++||+|++||.+|+++||..|+++|-.
T Consensus 173 dsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~---lGI~~tatml~Gh~E~~ed~~~hl~~ir~lQ~~~gg~~~ 249 (370)
T COG1060 173 DSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHR---LGIPTTATMLLGHVETREDRIDHLEHIRDLQDETGGFQE 249 (370)
T ss_pred CcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHH---cCCCccceeEEEecCCHHHHHHHHHHHHHHHHHhCCcEE
Confidence 999998764 458888888889999999999999999 589999999999999999999999999999743
Q ss_pred EEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhh
Q 017179 306 VMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 306 ~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
+++ +-++|.....+....-.+.-.+.++.+|.++=|+-
T Consensus 250 fI~--~~f~p~~~~~~~~~~~~~~~~~~l~~iAiaRi~l~ 287 (370)
T COG1060 250 FIP--LRFRPENGPLPAEVVPEASLEQDLKAIALARIFLD 287 (370)
T ss_pred EEc--ccccCCCCCccccCCCCCCHHHHHHHHHHHHHHcc
Confidence 333 33567322212222223556888899988876544
|
|
| >PRK09234 fbiC FO synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=251.50 Aligned_cols=240 Identities=17% Similarity=0.243 Sum_probs=193.5
Q ss_pred ccHHHHHHHHh--hcChhhhhhhcCCCCcccccCCCCCCccEEEEee-----eCCccCCCCcCCCCCCCCC-C--CCCCc
Q 017179 90 DKYVQIKKKLR--ELKLHTVCEEAKCPNLGECWSGGETGTATATIMI-----LGDTCTRGCRFCNVKTSRA-P--PPPDP 159 (376)
Q Consensus 90 ~~~~~~~~~l~--~~~L~tvce~A~cpn~~ec~~~~~~~~~tat~m~-----i~d~C~~~C~FC~v~~~r~-~--~~l~~ 159 (376)
-..++...++. ..+|..+|+.|+-.+..- + |+ +++|++ ++|.|..+|+||+|+...+ . ..+++
T Consensus 487 ls~~eal~Ll~~~~~~l~~L~~~Ad~iR~~~-~-G~-----~Vt~vvn~~In~TN~C~~~C~FCafs~~~~~~~~y~Ls~ 559 (843)
T PRK09234 487 LTDDEALALFTADGPALEAVCRLADDLRRDV-V-GD-----DVTYVVNRNINFTNICYTGCRFCAFAQRKTDADAYTLSL 559 (843)
T ss_pred CCHHHHHHHHcCCchhHHHHHHHHHHHHHHh-c-CC-----eEEEEEeeceecCCCCCCCCcccccccCCCCCCcccCCH
Confidence 35778888886 458999999998777653 3 33 677643 5899999999999997532 2 24899
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCC-C--------CCChHHHHHHHH
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPD-F--------RGNNGCVREVAK 230 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd-~--------~g~~e~l~~L~~ 230 (376)
|||++.|+++.+.|+++|+|+||.++++. .++|.++++.||+.+|++.|++++|. . ....|.++.|++
T Consensus 560 eeI~~~a~ea~~~G~tev~i~gG~~p~~~---~~~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~Gl~~~e~l~~Lke 636 (843)
T PRK09234 560 DEVADRAWEAWVAGATEVCMQGGIHPELP---GTGYADLVRAVKARVPSMHVHAFSPMEIVNGAARLGLSIREWLTALRE 636 (843)
T ss_pred HHHHHHHHHHHHCCCCEEEEecCCCCCcC---HHHHHHHHHHHHHhCCCeeEEecChHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999999999999887654 68899999999999999999998871 1 125899999999
Q ss_pred cCccccccc-ccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCc---
Q 017179 231 SGLNVFAHN-IETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVD--- 305 (376)
Q Consensus 231 aGld~i~h~-lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd--- 305 (376)
+|+|.|++. -|.. +++++.++|.+.+.++|+++++.||+ .|+.++++||+|+|||.+|++++|..|+++|++
T Consensus 637 AGLds~pgt~aeil~d~vr~~i~p~k~~~~~wle~i~~Ah~---lGi~~~stmm~G~~Et~edrv~hl~~LreLq~~tgG 713 (843)
T PRK09234 637 AGLDTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHE---VGLRSSSTMMYGHVDTPRHWVAHLRVLRDIQDRTGG 713 (843)
T ss_pred hCcCccCCCchhhCCHHHHhhcCCCCCCHHHHHHHHHHHHH---cCCCcccceEEcCCCCHHHHHHHHHHHHhcCcccCC
Confidence 999999985 4544 58888999778899999999999999 589999999999999999999999999999985
Q ss_pred ---EEEeecCCCCCCCCCCCcc--cCChHHHHHHHHHHHHHhhh
Q 017179 306 ---VMTFGQYMRPSKRHMPVSE--YITPEAFERYRALGMEMGFR 344 (376)
Q Consensus 306 ---~v~~~qY~~P~~~~~~v~~--~v~pe~~~~l~~~a~~~gf~ 344 (376)
+|++ +|+.| ...+++.. ...+...+.++.+|..+=++
T Consensus 714 f~~fIPl-~F~~~-~tpl~l~~~~~~~~t~~e~Lr~iAvaRl~L 755 (843)
T PRK09234 714 FTEFVPL-PFVHQ-NAPLYLAGAARPGPTHRENRAVHALARIML 755 (843)
T ss_pred eeeeeec-cccCC-CCCcccccCCCCCCCHHHHHHHHHHHHHhC
Confidence 7777 66655 23333222 12355678888888876544
|
|
| >TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-26 Score=226.26 Aligned_cols=233 Identities=19% Similarity=0.275 Sum_probs=184.1
Q ss_pred HHHHHHHHhh-cChhhhhhhcCCCCcccccCCCCCCccEEEE-----eeeCCccCCCCcCCCCCCCCCC---CCCCchhH
Q 017179 92 YVQIKKKLRE-LKLHTVCEEAKCPNLGECWSGGETGTATATI-----MILGDTCTRGCRFCNVKTSRAP---PPPDPDEP 162 (376)
Q Consensus 92 ~~~~~~~l~~-~~L~tvce~A~cpn~~ec~~~~~~~~~tat~-----m~i~d~C~~~C~FC~v~~~r~~---~~l~~eEi 162 (376)
.+++..+|.. .++..+++.|+..+..- + |. +++| +.++++|+.+|.||+++...+. ..+++||+
T Consensus 3 ~~e~~~ll~~~~~~~~L~~~A~~ir~~~-~-g~-----~v~~~~~~~i~~T~~C~~~C~FC~~~~~~~~~~~y~ls~eeI 75 (343)
T TIGR03551 3 KEEALELFEARGNLFELFRLADELRRDI-V-GD-----TVTYVVNRNINFTNVCYGGCGFCAFRKRKGDADAYLLSLEEI 75 (343)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHh-c-CC-----eEEEEeeeccccccccccCCccCCCccCCCCCCcccCCHHHH
Confidence 5677778765 68888999998876542 3 33 6666 3358999999999999864321 24899999
Q ss_pred HHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCC-------CCC--ChHHHHHHHHcCc
Q 017179 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPD-------FRG--NNGCVREVAKSGL 233 (376)
Q Consensus 163 ~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd-------~~g--~~e~l~~L~~aGl 233 (376)
++.++.+.+.|+++|+|+||+.+++. .+++.++++.|++..|++.+.+++|. -.| +.+.++.|++||+
T Consensus 76 ~e~~~~~~~~G~~~i~l~gG~~p~~~---~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl 152 (343)
T TIGR03551 76 AERAAEAWKAGATEVCIQGGIHPDLD---GDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGL 152 (343)
T ss_pred HHHHHHHHHCCCCEEEEEeCCCCCCC---HHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCc
Confidence 99999999999999999998766543 67899999999999899998886541 011 5889999999999
Q ss_pred ccccc-cccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcE-----
Q 017179 234 NVFAH-NIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDV----- 306 (376)
Q Consensus 234 d~i~h-~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~----- 306 (376)
+.+.. +.|+. ++++++|++.+.++++|+++++.|++ .|+.+++++|+|+|||.+|+++++.+|++++++.
T Consensus 153 ~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~---~Gi~v~s~~i~G~~Et~ed~~~~l~~lr~l~~~~~~~~~ 229 (343)
T TIGR03551 153 DSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHK---LGIPTTATIMYGHVETPEHWVDHLLILREIQEETGGFTE 229 (343)
T ss_pred ccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHH---cCCcccceEEEecCCCHHHHHHHHHHHHHhhHHhCCeeE
Confidence 99974 46765 59999999645699999999999999 5899999999999999999999999999999974
Q ss_pred -EEeecCCCCCCCCCCCccc----CChHHHHHHHHHHHHH
Q 017179 307 -MTFGQYMRPSKRHMPVSEY----ITPEAFERYRALGMEM 341 (376)
Q Consensus 307 -v~~~qY~~P~~~~~~v~~~----v~pe~~~~l~~~a~~~ 341 (376)
+|+ +|+.| ++|+... ......+.++.+|..+
T Consensus 230 ~iP~-~f~~~---gT~l~~~~~~~~~~~~~~~lr~iAv~R 265 (343)
T TIGR03551 230 FVPL-PFVHY---NAPLYLKGMARPGPTGREDLKVHAIAR 265 (343)
T ss_pred EEec-cccCC---CCccccccCCCCCCCHHHHHHHHHHHH
Confidence 555 44444 5555421 1124677888888764
|
This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases. |
| >TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-26 Score=228.54 Aligned_cols=235 Identities=17% Similarity=0.309 Sum_probs=185.6
Q ss_pred HHHHHHHHhhcChhhhhhhcCCCCcccccCCCCCCccEEEEee-----eCCccCCCCcCCCCCCCCC-C--CCCCchhHH
Q 017179 92 YVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMI-----LGDTCTRGCRFCNVKTSRA-P--PPPDPDEPT 163 (376)
Q Consensus 92 ~~~~~~~l~~~~L~tvce~A~cpn~~ec~~~~~~~~~tat~m~-----i~d~C~~~C~FC~v~~~r~-~--~~l~~eEi~ 163 (376)
.+++..+|...++..+++.|+-.+.. .|.|+ +++|.. ++++|+.+|+||++....+ + ..++++|++
T Consensus 5 ~~~~~~ll~~~~~~~l~~~A~~vr~~-~~~g~-----~v~~~~~~~i~~s~~C~~~C~fC~~~~~~~~~~~~~ls~eei~ 78 (340)
T TIGR03699 5 REEALELYKEADLLALGALADEVRRR-RHPGN-----IVTFVVDRNINYTNICVVGCKFCAFYRAPGHPEGYVLSVEEIL 78 (340)
T ss_pred HHHHHHHccCCcHHHHHHHHHHHHHH-hcCCC-----eEEEEeecccccchhhccCCccCCcccCCCCccccCCCHHHHH
Confidence 56777788777899999999877664 23233 666643 5999999999999875432 2 248999999
Q ss_pred HHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCC---C----CC--ChHHHHHHHHcCcc
Q 017179 164 NVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPD---F----RG--NNGCVREVAKSGLN 234 (376)
Q Consensus 164 ~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd---~----~g--~~e~l~~L~~aGld 234 (376)
+.++.+++.|+++|+|+||..+++. .+++.++++.|++..|++.+.++++. + .| .++.++.|+++|++
T Consensus 79 ~~~~~~~~~G~~~i~l~gG~~p~~~---~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g~~~~e~l~~Lk~aG~~ 155 (340)
T TIGR03699 79 QKIEELVAYGGTQILLQGGVNPDLG---LDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEGLSLREVLERLKEAGLD 155 (340)
T ss_pred HHHHHHHHcCCcEEEEecCCCCCCC---HHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCCCCHHHHHHHHHHcCCC
Confidence 9999999999999999998766543 67899999999998887776655542 1 01 37899999999999
Q ss_pred cccc-cccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcE------
Q 017179 235 VFAH-NIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDV------ 306 (376)
Q Consensus 235 ~i~h-~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~------ 306 (376)
.++| ++|+. +++++.+.+.+.++++|+++++.+++ .|+.+++++|+|+|||++|+++++..|++++++.
T Consensus 156 ~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~---~Gi~v~~~~iiGlgEt~ed~~~~l~~l~~l~~~~~~~~~f 232 (340)
T TIGR03699 156 SIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHK---LGLPTTATMMFGHVETLEDRIEHLERIRELQDKTGGFTAF 232 (340)
T ss_pred cCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHH---cCCCccceeEeeCCCCHHHHHHHHHHHHHhchhhCCeeEE
Confidence 9997 58976 59999998667899999999999999 5899999999999999999999999999999875
Q ss_pred EEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHh
Q 017179 307 MTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMG 342 (376)
Q Consensus 307 v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~g 342 (376)
||+ +| .| .++|+.....+...+.++.+|..+-
T Consensus 233 IP~-~f-~p--~~tpl~~~~~~~~~e~l~~iA~~Rl 264 (340)
T TIGR03699 233 IPW-TF-QP--GNTELGKKRPATSTEYLKVLAISRI 264 (340)
T ss_pred Eee-cc-cC--CCCcccCCCCCCHHHHHHHHHHHHH
Confidence 443 23 35 3666655334455678888887754
|
members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine. |
| >TIGR00423 radical SAM domain protein, CofH subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.3e-26 Score=222.27 Aligned_cols=202 Identities=16% Similarity=0.314 Sum_probs=164.1
Q ss_pred EEEeeeCCccCCCCcCCCCCCCCC-C--CCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhC
Q 017179 130 ATIMILGDTCTRGCRFCNVKTSRA-P--PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK 206 (376)
Q Consensus 130 at~m~i~d~C~~~C~FC~v~~~r~-~--~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~ 206 (376)
..++.++++|+++|.||+++...+ . ..+++|||++.++++.+.|+++|+|+||+.+++. .+++.++++.|++..
T Consensus 6 n~~i~~T~~C~~~C~FC~~~~~~~~~~~~~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~---~~~~~~i~~~Ik~~~ 82 (309)
T TIGR00423 6 NRNINFTNICVGKCKFCAFRAREKDKDAYVLSLEEILEKVKEAVAKGATEVCIQGGLNPQLD---IEYYEELFRAIKQEF 82 (309)
T ss_pred eeeecCccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCC---HHHHHHHHHHHHHHC
Confidence 345668999999999999986432 1 2489999999999999999999999998766533 678999999999998
Q ss_pred CCcEEEEecCC-------CCC--ChHHHHHHHHcCcccccc-cccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCc
Q 017179 207 PNMLIEALVPD-------FRG--NNGCVREVAKSGLNVFAH-NIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGT 275 (376)
Q Consensus 207 p~i~Ie~l~pd-------~~g--~~e~l~~L~~aGld~i~h-~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi 275 (376)
|++.+.++++. -.| +.+.++.|+++|++.+++ ++|+. +++++++++.+.++++|+++++.|++ .|+
T Consensus 83 ~~i~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~---~Gi 159 (309)
T TIGR00423 83 PDVHIHAFSPMEVYFLAKNEGLSIEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHR---LGI 159 (309)
T ss_pred CCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHH---cCC
Confidence 88998877651 111 478899999999999985 79976 59999998667899999999999999 589
Q ss_pred eEEEeEEEecCCCHHHHHHHHHHHHHcCCc------EEEeecCCCCCCCCCC-Cccc--CChHHHHHHHHHHHHH
Q 017179 276 LTKTSIMLGCGETPDQVVSTMEKVRAAGVD------VMTFGQYMRPSKRHMP-VSEY--ITPEAFERYRALGMEM 341 (376)
Q Consensus 276 ~tkt~imvGlGET~ee~~e~L~~Lrel~vd------~v~~~qY~~P~~~~~~-v~~~--v~pe~~~~l~~~a~~~ 341 (376)
.+++++|+|+|||+||+++++.+|++++.+ ++|+ +|. | .++| +... ..+...+.|+.+|..+
T Consensus 160 ~~~s~~iiG~~Et~ed~~~~l~~lr~l~~~~~~f~~fiP~-~f~-~--~~t~~l~~~~~~~~~~~e~lr~iA~~R 230 (309)
T TIGR00423 160 PTTATMMFGHVENPEHRVEHLLRIRKIQEKTGGFTEFIPL-PFQ-P--ENNPYLEGEVRKGASGIDDLKVIAISR 230 (309)
T ss_pred CceeeEEecCCCCHHHHHHHHHHHHhhchhhCCeeeEEee-eec-C--CCChhhccCCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999987 4444 343 3 2444 4332 3455677888888774
|
This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family. |
| >PRK06256 biotin synthase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-25 Score=221.19 Aligned_cols=236 Identities=17% Similarity=0.234 Sum_probs=182.3
Q ss_pred ccHHHHHHHHh--hcChhhhhhhcCCCCcccccCCCCCCccEEEEee-eCCccCCCCcCCCCCCCCC-C----CCCCchh
Q 017179 90 DKYVQIKKKLR--ELKLHTVCEEAKCPNLGECWSGGETGTATATIMI-LGDTCTRGCRFCNVKTSRA-P----PPPDPDE 161 (376)
Q Consensus 90 ~~~~~~~~~l~--~~~L~tvce~A~cpn~~ec~~~~~~~~~tat~m~-i~d~C~~~C~FC~v~~~r~-~----~~l~~eE 161 (376)
-.++++..+|+ ..+|..+++.|+-.+.. +.|. .....+++. .+++|+.+|.||+++...+ + ..++++|
T Consensus 20 ~~~~e~~~ll~~~~~~~~~L~~~A~~~r~~--~~g~--~v~~~~i~~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~s~ee 95 (336)
T PRK06256 20 LTKEEALALLEIPDDDLLELLAAAYEVRKH--FCGK--KVKLNTIINAKSGLCPEDCGYCSQSAGSSAPVYRYAWLDIEE 95 (336)
T ss_pred CCHHHHHHHHcCChHHHHHHHHHHHHHHHH--hCCC--eEEEEEeeeccCCCCCCCCccCCCcCCCCCCCceecCCCHHH
Confidence 34677888876 44688888888644432 3232 011123333 3999999999999986421 1 1379999
Q ss_pred HHHHHHHHHHCCCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccc
Q 017179 162 PTNVAEAIASWGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNI 240 (376)
Q Consensus 162 i~~~a~al~~~G~~eIvLTs-g~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~l 240 (376)
+++.++.+.+.|+++++|++ |..++..+ .+++.++++.|++. +++.+.+..+.. +++.++.|+++|++.+.|++
T Consensus 96 I~~~~~~~~~~g~~~~~l~~~g~~p~~~~--~~~~~e~i~~i~~~-~~i~~~~~~g~l--~~e~l~~LkeaG~~~v~~~l 170 (336)
T PRK06256 96 LIEAAKEAIEEGAGTFCIVASGRGPSGKE--VDQVVEAVKAIKEE-TDLEICACLGLL--TEEQAERLKEAGVDRYNHNL 170 (336)
T ss_pred HHHHHHHHHHCCCCEEEEEecCCCCCchH--HHHHHHHHHHHHhc-CCCcEEecCCcC--CHHHHHHHHHhCCCEEecCC
Confidence 99999999999998887754 44333222 56899999999886 567666655554 78999999999999999999
Q ss_pred cchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCC
Q 017179 241 ETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHM 320 (376)
Q Consensus 241 Etv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~ 320 (376)
|+.+++|++|+ +++++++++++++.+++ .|+.+++++|+|+|||++|+.+++.+|++++++.+++ .++.| ..++
T Consensus 171 Ets~~~~~~i~-~~~t~~~~i~~i~~a~~---~Gi~v~~~~I~GlgEt~ed~~~~~~~l~~l~~~~v~i-~~l~P-~pGT 244 (336)
T PRK06256 171 ETSRSYFPNVV-TTHTYEDRIDTCEMVKA---AGIEPCSGGIIGMGESLEDRVEHAFFLKELDADSIPI-NFLNP-IPGT 244 (336)
T ss_pred ccCHHHHhhcC-CCCCHHHHHHHHHHHHH---cCCeeccCeEEeCCCCHHHHHHHHHHHHhCCCCEEee-ccccc-CCCC
Confidence 99779999999 68899999999999999 5899999999999999999999999999999999998 45667 4577
Q ss_pred CCcccCChHHHHHHHHHHHH
Q 017179 321 PVSEYITPEAFERYRALGME 340 (376)
Q Consensus 321 ~v~~~v~pe~~~~l~~~a~~ 340 (376)
|+.....+...+.++.+|..
T Consensus 245 ~l~~~~~~~~~e~l~~ia~~ 264 (336)
T PRK06256 245 PLENHPELTPLECLKTIAIF 264 (336)
T ss_pred CCCCCCCCCHHHHHHHHHHH
Confidence 77665445556666666654
|
|
| >PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=8e-26 Score=226.98 Aligned_cols=230 Identities=15% Similarity=0.192 Sum_probs=182.9
Q ss_pred cHHHHHHHHhh---cChhhhhhhcCCCCcccccCCCCCCccEEE-E--eeeCCccCCCCcCCCCCCCCCC--CCCCchhH
Q 017179 91 KYVQIKKKLRE---LKLHTVCEEAKCPNLGECWSGGETGTATAT-I--MILGDTCTRGCRFCNVKTSRAP--PPPDPDEP 162 (376)
Q Consensus 91 ~~~~~~~~l~~---~~L~tvce~A~cpn~~ec~~~~~~~~~tat-~--m~i~d~C~~~C~FC~v~~~r~~--~~l~~eEi 162 (376)
..+++..+|.. ..|..+++.|+-.+..- ||+ +++ + +.++|.|+.+|.||+++...+. ..++++||
T Consensus 37 s~ee~~~Ll~~~~~~~l~~L~~~A~~ir~~~-~G~------~v~l~~~in~Tn~C~~~C~YC~f~~~~~~~~~~ls~eEI 109 (371)
T PRK09240 37 SLEDLMALLSPAAEPYLEEMAQKAQRLTRQR-FGN------TISLYTPLYLSNYCANDCTYCGFSMSNKIKRKTLDEEEI 109 (371)
T ss_pred CHHHHHHHhCCCChhHHHHHHHHHHHHHHHH-cCC------EEEEEeceEEcccccCcCCcCCCCCCCCCccccCCHHHH
Confidence 46788888873 45888999988776653 343 444 3 3459999999999999864322 24899999
Q ss_pred HHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccc
Q 017179 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIET 242 (376)
Q Consensus 163 ~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEt 242 (376)
++.++.+.+.|+++|+|+||+.+...+ .+++.++++.|++.+|.+.+++. .. +.+.++.|+++|++.|+||+||
T Consensus 110 ~~~a~~~~~~Gv~~i~lvgGe~p~~~~--~e~l~~~i~~Ik~~~p~i~i~~g--~l--t~e~l~~Lk~aGv~r~~i~lET 183 (371)
T PRK09240 110 EREMAAIKKLGFEHILLLTGEHEAKVG--VDYIRRALPIAREYFSSVSIEVQ--PL--SEEEYAELVELGLDGVTVYQET 183 (371)
T ss_pred HHHHHHHHhCCCCEEEEeeCCCCCCCC--HHHHHHHHHHHHHhCCCceeccC--CC--CHHHHHHHHHcCCCEEEEEEec
Confidence 999999999999999999998765433 88999999999998888777653 22 6888999999999999999999
Q ss_pred h-HHHHHhhcC--CCCCHHHHHHHHHHHHHhCCCCce-EEEeEEEecCCCHHHHHHHHHHHHHcCCc------EEEeecC
Q 017179 243 V-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLGCGETPDQVVSTMEKVRAAGVD------VMTFGQY 312 (376)
Q Consensus 243 v-~~l~~~vr~--r~~t~e~~L~vl~~ak~~~p~Gi~-tkt~imvGlGET~ee~~e~L~~Lrel~vd------~v~~~qY 312 (376)
. +++|+.|++ ++++|+++++.++.|++ .|+. +++++|+|+||+.+|+++++..|++++++ .|+| +.
T Consensus 184 ~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~---aG~~~v~~g~i~Glge~~~d~~~~a~~l~~L~~~~~~~~~sv~~-~~ 259 (371)
T PRK09240 184 YNPATYAKHHLRGPKRDFEYRLETPERAGR---AGIRKIGLGALLGLSDWRTDALMTALHLRYLQRKYWQAEYSISF-PR 259 (371)
T ss_pred CCHHHHHHhCcCCCCCCHHHHHHHHHHHHH---cCCCeeceEEEecCCccHHHHHHHHHHHHHHHHhCCCCceeeec-Cc
Confidence 6 699999973 47899999999999999 5885 99999999999999999999999999874 6777 78
Q ss_pred CCCCCCCCCCcccCChHHHHHHHHHHH
Q 017179 313 MRPSKRHMPVSEYITPEAFERYRALGM 339 (376)
Q Consensus 313 ~~P~~~~~~v~~~v~pe~~~~l~~~a~ 339 (376)
++|. .+ ++.........+.++.++.
T Consensus 260 l~P~-~g-~~~~~~~~~~~e~l~~ia~ 284 (371)
T PRK09240 260 LRPC-TG-GIEPASIVSDKQLVQLICA 284 (371)
T ss_pred cccC-CC-CCCCCCCCCHHHHHHHHHH
Confidence 8895 45 5544333334444555544
|
|
| >PRK07094 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-25 Score=216.88 Aligned_cols=231 Identities=14% Similarity=0.234 Sum_probs=177.0
Q ss_pred HHHHHHHhhcChh---hhhhhcCCCCcccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCCCC---CCCCchhHHHHH
Q 017179 93 VQIKKKLRELKLH---TVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAP---PPPDPDEPTNVA 166 (376)
Q Consensus 93 ~~~~~~l~~~~L~---tvce~A~cpn~~ec~~~~~~~~~tat~m~i~d~C~~~C~FC~v~~~r~~---~~l~~eEi~~~a 166 (376)
+++..+|+..+.. .+.+.|+-.+.. .+|+. -....++.++++|+.+|.||.++...+. ..++++|+++.+
T Consensus 4 ~e~~~ll~~~~~~~~~~L~~~A~~~r~~-~~g~~---v~~~~~i~~s~gC~~~C~fC~~~~~~~~~~r~~ls~eei~~~~ 79 (323)
T PRK07094 4 DEILELLSNDDEEELKYLFKAADEVRKK-YVGDE---VHLRGLIEFSNYCRNNCLYCGLRRDNKNIERYRLSPEEILECA 79 (323)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHH-hCCCE---EEEEEEEEECCCCCCCCEeCCcccCCCCCcCcCCCHHHHHHHH
Confidence 4566666544332 366666644443 23432 1123346679999999999999865322 136999999999
Q ss_pred HHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccch-HH
Q 017179 167 EAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EE 245 (376)
Q Consensus 167 ~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv-~~ 245 (376)
+.+.+.|+++|+|+||+.+.+. .+++.++++.|++. +++.+.+..... +++.++.|+++|++.+.+++|+. ++
T Consensus 80 ~~~~~~g~~~i~l~gG~~~~~~---~~~l~~l~~~i~~~-~~l~i~~~~g~~--~~e~l~~Lk~aG~~~v~~glEs~~~~ 153 (323)
T PRK07094 80 KKAYELGYRTIVLQSGEDPYYT---DEKIADIIKEIKKE-LDVAITLSLGER--SYEEYKAWKEAGADRYLLRHETADKE 153 (323)
T ss_pred HHHHHCCCCEEEEecCCCCCCC---HHHHHHHHHHHHcc-CCceEEEecCCC--CHHHHHHHHHcCCCEEEeccccCCHH
Confidence 9999999999999999744332 57899999999886 567776554444 68999999999999999999987 59
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcc
Q 017179 246 LQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSE 324 (376)
Q Consensus 246 l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~ 324 (376)
+++.|+ ++++++++++.++.+++ .|+.+.+++|+|+ |||.+|+.++++++++++++.+++..| .| ..++|+..
T Consensus 154 ~~~~i~-~~~s~~~~~~~i~~l~~---~Gi~v~~~~iiGlpget~ed~~~~l~~l~~l~~~~v~~~~~-~P-~pgTpl~~ 227 (323)
T PRK07094 154 LYAKLH-PGMSFENRIACLKDLKE---LGYEVGSGFMVGLPGQTLEDLADDILFLKELDLDMIGIGPF-IP-HPDTPLKD 227 (323)
T ss_pred HHHHhC-CCCCHHHHHHHHHHHHH---cCCeecceEEEECCCCCHHHHHHHHHHHHhCCCCeeeeecc-cc-CCCCCccc
Confidence 999999 58999999999999999 5899999999999 999999999999999999999999655 46 35778766
Q ss_pred cCChHHHHHHHHHHH
Q 017179 325 YITPEAFERYRALGM 339 (376)
Q Consensus 325 ~v~pe~~~~l~~~a~ 339 (376)
...+...+.++.+|.
T Consensus 228 ~~~~~~~~~~~~~a~ 242 (323)
T PRK07094 228 EKGGSLELTLKVLAL 242 (323)
T ss_pred CCCCCHHHHHHHHHH
Confidence 443333333444444
|
|
| >TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=220.91 Aligned_cols=206 Identities=14% Similarity=0.168 Sum_probs=161.6
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC---CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCc-------------ccH
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP---PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD-------------QGS 192 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~---~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d-------------~g~ 192 (376)
...|+.++|+|+.+|+||+++..++.. .+++|||++.++.+.+.|+++++||||.+++... ...
T Consensus 4 ~n~~i~~tn~C~~~C~fCaf~~~~g~~~~~~l~~eeI~~~a~~~~~~G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~~~~ 83 (322)
T TIGR03550 4 RNVFIPLTRLCRNRCGYCTFRRPPGELEAALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAREWLAEMGYDSTL 83 (322)
T ss_pred ceEEeccccCcCCCCccCCccccCCCcccccCCHHHHHHHHHHHHHCCCCEEEEecCCCccccHHHHHHHHHhcCCccHH
Confidence 456788999999999999999865432 4899999999999999999999999998876530 113
Q ss_pred HHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcC---CCCCHHHHHHHHHHHH
Q 017179 193 GHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRD---HRANFKQSLDVLMMAK 268 (376)
Q Consensus 193 ~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~---r~~t~e~~L~vl~~ak 268 (376)
+++.++++.|++.. ++.+.+....+ +.+.+..|+++|++ +.+++||+. ++++.++. ++.++++|+++++.|+
T Consensus 84 ~~~~~~~~~i~~e~-~~~~~~~~g~l--t~e~l~~Lk~aG~~-~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~~a~ 159 (322)
T TIGR03550 84 EYLRELCELALEET-GLLPHTNPGVM--SRDELARLKPVNAS-MGLMLETTSERLCKGEAHYGSPGKDPAVRLETIEDAG 159 (322)
T ss_pred HHHHHHHHHHHHhc-CCccccCCCCC--CHHHHHHHHhhCCC-CCcchhhhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 78899999998653 23333333344 78999999999987 589999875 76665541 3457899999999999
Q ss_pred HhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcC-----CcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhh
Q 017179 269 DYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAG-----VDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGF 343 (376)
Q Consensus 269 ~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~-----vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf 343 (376)
+ .|+.++++||+|+|||++|+++++..|++++ ++.+.+..| +| .+++|+.....+...+.++.+|..+=+
T Consensus 160 ~---~Gi~~~s~~i~G~gEt~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f-~P-~~gTpl~~~~~~s~~e~lr~iAv~Rl~ 234 (322)
T TIGR03550 160 R---LKIPFTTGILIGIGETREERAESLLAIRELHERYGHIQEVIVQNF-RA-KPGTPMENHPEPSLEEMLRTVAVARLI 234 (322)
T ss_pred H---cCCCccceeeEeCCCCHHHHHHHHHHHHHHHHHcCCCeEEecCcc-cc-CCCCCccCCCCCCHHHHHHHHHHHHHH
Confidence 9 5899999999999999999999999999998 655555444 68 457787655445667788888876533
|
This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria. |
| >PRK09234 fbiC FO synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.4e-25 Score=237.61 Aligned_cols=241 Identities=17% Similarity=0.143 Sum_probs=183.3
Q ss_pred HHHHHHHH--hhcChhhhhhhcCCCCcccccCCCCCCccEEE-----EeeeCCccCCCCcCCCCCCCCCC-C--CCCchh
Q 017179 92 YVQIKKKL--RELKLHTVCEEAKCPNLGECWSGGETGTATAT-----IMILGDTCTRGCRFCNVKTSRAP-P--PPDPDE 161 (376)
Q Consensus 92 ~~~~~~~l--~~~~L~tvce~A~cpn~~ec~~~~~~~~~tat-----~m~i~d~C~~~C~FC~v~~~r~~-~--~l~~eE 161 (376)
.++...++ ...+|..+++.|+-.+..- +|+-..+ .++| |+.++|.|..+|.||+|.+..+. . .+++||
T Consensus 29 ~eEa~~Ll~~~~~dl~~L~~~A~~vR~~~-~G~~~~~-~~Vty~~n~~In~Tn~C~~~C~YCaF~~~~~~~~~~~ls~eE 106 (843)
T PRK09234 29 VDEAAVLLTARGDDLADLCASAARVRDAG-LGAAGRP-GVVTYSRKVFIPLTRLCRDRCHYCTFATVPGKLEAAYLSPDE 106 (843)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHH-cCCcccC-ceEEEEeEEEecCCCCCCCCCCcCCCccCCCCCccccCCHHH
Confidence 45566665 3457888888887666542 3320001 2454 45579999999999999875322 2 389999
Q ss_pred HHHHHHHHHHCCCcEEEEEeeeCCCCC-------------cccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHH
Q 017179 162 PTNVAEAIASWGLDYVVITSVDRDDLA-------------DQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREV 228 (376)
Q Consensus 162 i~~~a~al~~~G~~eIvLTsg~r~dl~-------------d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L 228 (376)
|++.++++++.|+++++||||++++.. +.-.+++.++++.|++..+ +.+++..+.+ +.+.++.|
T Consensus 107 Il~~a~~~~~~G~~e~l~t~G~~P~~~~~~~~~~l~~~gy~~~~ey~~~~~~~ik~~~g-l~p~i~~G~l--s~~E~~~L 183 (843)
T PRK09234 107 VLDIARAGAAAGCKEALFTLGDRPEDRWPEAREWLDERGYDSTLDYVRAMAIRVLEETG-LLPHLNPGVM--SWSELARL 183 (843)
T ss_pred HHHHHHHHHHCCCCEEEEecCCCCccccccccccccccccccHHHHHHHHHHHHHHhcC-CCceeeeCCC--CHHHHHHH
Confidence 999999999999999999999987642 1125899999999998642 3334444445 67889999
Q ss_pred HHcCcccccccccch-HHHHHh------hcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHH
Q 017179 229 AKSGLNVFAHNIETV-EELQSA------VRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRA 301 (376)
Q Consensus 229 ~~aGld~i~h~lEtv-~~l~~~------vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lre 301 (376)
+++|++ +++++||+ +++|+. ++ ++..+++||++++.|++ .|+.++|+||+|+|||++|++++|..||+
T Consensus 184 k~~g~s-~gl~lEt~~~~l~~~~g~~h~~~-P~K~~~~RL~ti~~A~~---lGi~~tsG~L~GiGEt~edRve~L~~LR~ 258 (843)
T PRK09234 184 KPVAPS-MGMMLETTSRRLFEEKGGPHYGS-PDKDPAVRLRVLEDAGR---LSVPFTTGILIGIGETLAERAESLFAIRK 258 (843)
T ss_pred HHhcCc-CCCCHHHHHHHHHHhhcccccCC-CCCCHHHHHHHHHHHHH---cCCCccceEEEECCCCHHHHHHHHHHHHH
Confidence 999997 88999984 688754 34 46789999999999999 58999999999999999999999999999
Q ss_pred cC-----CcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhh
Q 017179 302 AG-----VDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFR 344 (376)
Q Consensus 302 l~-----vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~ 344 (376)
++ ++.+.+ |.|+| +.++++.....+...+.++.+|..+=++
T Consensus 259 Lq~~~g~~~evi~-~~F~p-~~gT~l~~~~~~s~~e~Lr~iAvaRliL 304 (843)
T PRK09234 259 LHREYGHIQEVIV-QNFRA-KPDTAMAGVPDAGLEELLATIAVARLVL 304 (843)
T ss_pred hhHhhCCCcEEee-ccccc-CCCCCCCCCCCCCHHHHHHHHHHHHHhC
Confidence 95 666777 45567 5678877665677788888888875443
|
|
| >TIGR02351 thiH thiazole biosynthesis protein ThiH | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-24 Score=214.48 Aligned_cols=210 Identities=18% Similarity=0.237 Sum_probs=172.4
Q ss_pred cHHHHHHHHhhc---ChhhhhhhcCCCCcccccCCCCCCccEEE-E--eeeCCccCCCCcCCCCCCCCCC--CCCCchhH
Q 017179 91 KYVQIKKKLREL---KLHTVCEEAKCPNLGECWSGGETGTATAT-I--MILGDTCTRGCRFCNVKTSRAP--PPPDPDEP 162 (376)
Q Consensus 91 ~~~~~~~~l~~~---~L~tvce~A~cpn~~ec~~~~~~~~~tat-~--m~i~d~C~~~C~FC~v~~~r~~--~~l~~eEi 162 (376)
..++...+|... .|..+++.|+-.+.. .+|+ +++ + +.++|.|+.+|.||+++..... ..+++||+
T Consensus 36 s~~e~~~Ll~~~~~~~l~~L~~~A~~ir~~-~~G~------~v~l~~~i~~Tn~C~~~C~yC~~s~~~~~~~~~Ls~eEI 108 (366)
T TIGR02351 36 SLEDFLALLSPAAEPYLEEMAQKAKKLTRK-RFGN------TISLFTPLYLSNYCSNKCVYCGFSMSNKIKRKKLNEEEI 108 (366)
T ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHHHHH-HcCC------EEEEEeeeeECccccCCCCcCCCCCCCCCccCcCCHHHH
Confidence 367777787643 488888888865553 3443 344 3 3359999999999999864222 23899999
Q ss_pred HHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccc
Q 017179 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIET 242 (376)
Q Consensus 163 ~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEt 242 (376)
.+.++.+.+.|+++|+|+||..+...+ .+++.++++.|++.+|.+.|++.. + +.+.++.|+++|++.+.+++||
T Consensus 109 ~~~a~~~~~~Gv~~i~lvgGe~p~~~~--~e~l~eii~~Ik~~~p~i~Iei~~--l--t~e~~~~Lk~aGv~r~~i~lET 182 (366)
T TIGR02351 109 EREIEAIKKSGFKEILLVTGESEKAAG--VEYIAEAIKLAREYFSSLAIEVQP--L--NEEEYKKLVEAGLDGVTVYQET 182 (366)
T ss_pred HHHHHHHHhCCCCEEEEeeCCCCCCCC--HHHHHHHHHHHHHhCCcccccccc--C--CHHHHHHHHHcCCCEEEEEeec
Confidence 999999999999999999987765544 789999999999988888777542 3 7889999999999999999999
Q ss_pred h-HHHHHhhcC--CCCCHHHHHHHHHHHHHhCCCCce-EEEeEEEecCCCHHHHHHHHHHHHHcCC------cEEEeecC
Q 017179 243 V-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLGCGETPDQVVSTMEKVRAAGV------DVMTFGQY 312 (376)
Q Consensus 243 v-~~l~~~vr~--r~~t~e~~L~vl~~ak~~~p~Gi~-tkt~imvGlGET~ee~~e~L~~Lrel~v------d~v~~~qY 312 (376)
. +++|+.|++ ++++|+++++.++.|++ .|+. +++++|+|+||+.+|.+++...|+++++ ..|+| +.
T Consensus 183 ~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~---aG~~~v~~g~i~Gl~e~~~d~~~~a~~l~~L~~~~~~~~~sv~~-~~ 258 (366)
T TIGR02351 183 YNEKKYKKHHLAGKKKDFRYRLNTPERAAK---AGMRKIGIGALLGLDDWRTDAFFTAYHLRYLQKKYWKTEISISV-PR 258 (366)
T ss_pred CCHHHHHhcCcCCCCCCHHHHHHHHHHHHH---cCCCeeceeEEEeCchhHHHHHHHHHHHHHHHHHcCCCCccccc-cc
Confidence 8 599999983 57899999999999999 5887 8999999999999999999999888877 56777 77
Q ss_pred CCCCC
Q 017179 313 MRPSK 317 (376)
Q Consensus 313 ~~P~~ 317 (376)
++|..
T Consensus 259 l~P~~ 263 (366)
T TIGR02351 259 LRPCT 263 (366)
T ss_pred cccCC
Confidence 88863
|
Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes. |
| >PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=216.17 Aligned_cols=213 Identities=18% Similarity=0.239 Sum_probs=170.7
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCC
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p 207 (376)
..+|+.++.||+++|+||+++..+++. +.++++|+++++.+.+.|+++|+|++++-..+... ...|.+++++|.+...
T Consensus 154 ~~a~l~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~-~~~l~~Ll~~l~~~~~ 232 (449)
T PRK14332 154 IQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQ-STDFAGLIQMLLDETT 232 (449)
T ss_pred ceEEEEecCCcCCCCCCCCcccccCCcccCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCC-cccHHHHHHHHhcCCC
Confidence 567899999999999999999876554 58999999999999999999999999875544321 2358889988865432
Q ss_pred CcEEEEe--cCCCCCChHHHHHHHHcC--cccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEE
Q 017179 208 NMLIEAL--VPDFRGNNGCVREVAKSG--LNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIM 282 (376)
Q Consensus 208 ~i~Ie~l--~pd~~g~~e~l~~L~~aG--ld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~im 282 (376)
..+|... .|+.. +++.++.++++| +..+..++|+. +++++.|+ |+++.++++++++.+++..|+ +.+.+++|
T Consensus 233 ~~~ir~~~~~p~~~-~~ell~~m~~~~~~~~~l~lgvQSgsd~vLk~m~-R~~t~~~~~~~i~~lr~~~p~-i~i~td~I 309 (449)
T PRK14332 233 IERIRFTSPHPKDF-PDHLLSLMAKNPRFCPNIHLPLQAGNTRVLEEMK-RSYSKEEFLDVVKEIRNIVPD-VGITTDII 309 (449)
T ss_pred cceEEEECCCcccC-CHHHHHHHHhCCCccceEEECCCcCCHHHHHhhC-CCCCHHHHHHHHHHHHHhCCC-CEEEEEEE
Confidence 2345544 34332 688899999988 67777889964 69999999 899999999999999998775 88999999
Q ss_pred Eec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCC-----CCcccCChHHHHHHHHHHHHHhhhh
Q 017179 283 LGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHM-----PVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 283 vGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~-----~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
+|| |||++|+.++++++++++++.++++.|. +|+.... ++.+.++.++.++|.+++.++.+.+
T Consensus 310 vGfPgET~edf~~tl~~v~~l~~~~~~~f~ys~~~GT~a~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~ 379 (449)
T PRK14332 310 VGFPNETEEEFEDTLAVVREVQFDMAFMFKYSEREGTMAKRKLPDNVPEEVKSARLTKLVDLQTSISHEQ 379 (449)
T ss_pred eeCCCCCHHHHHHHHHHHHhCCCCEEEEEEecCCCCChhHHhCcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 9999999999999999999999999996 5532221 1333344567888888888877765
|
|
| >PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-23 Score=213.94 Aligned_cols=214 Identities=16% Similarity=0.250 Sum_probs=172.2
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCc-ccHHHHHHHHHHHHhhC
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD-QGSGHFAQTVRKLKELK 206 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d-~g~~~~~elvr~Ik~~~ 206 (376)
+..|+.+++||+.+|+||+++..++.. +.++++++++++.+.+.|+++|+|+|++-..+.| .+...|.++++.|.+..
T Consensus 149 ~~a~l~isrGC~~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~~~~l~~Ll~~l~~~~ 228 (445)
T PRK14340 149 ISAFVPVMRGCNNMCAFCVVPFTRGRERSHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEAGADFAGLLDAVSRAA 228 (445)
T ss_pred cEEEEEeccCCCCCCCCCCcccccCCCcCCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCCCchHHHHHHHHhhcC
Confidence 578899999999999999999776544 5899999999999999999999999998443332 11235889999987655
Q ss_pred CCcEEEE--ecCCCCCChHHHHHHHHc--Ccccccccccc-hHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE
Q 017179 207 PNMLIEA--LVPDFRGNNGCVREVAKS--GLNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI 281 (376)
Q Consensus 207 p~i~Ie~--l~pd~~g~~e~l~~L~~a--Gld~i~h~lEt-v~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~i 281 (376)
+..+|.. ..|+.. +++.++.|+++ |...+..++|+ ++++++.|+ |+++.++++++++.+++..|+ +.+.+++
T Consensus 229 ~~~rir~~~~~p~~l-~~ell~~~~~~~~g~~~l~iglQSgsd~vLk~m~-R~~t~~~~~~~v~~lr~~~pg-i~i~td~ 305 (445)
T PRK14340 229 PEMRIRFTTSHPKDI-SESLVRTIAARPNICNHIHLPVQSGSSRMLRRMN-RGHTIEEYLEKIALIRSAIPG-VTLSTDL 305 (445)
T ss_pred CCcEEEEccCChhhc-CHHHHHHHHhCCCCCCeEEECCCcCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCC-CEEeccE
Confidence 5555554 455433 68899999886 67888888996 569999999 899999999999999998775 9999999
Q ss_pred EEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCC-----CCcccCChHHHHHHHHHHHHHhhhh
Q 017179 282 MLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHM-----PVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 282 mvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~-----~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
|+|| |||++++.++++++++++++.++++.|. +|+.... ++...+..++.++|.+++.++...+
T Consensus 306 IvGfPgET~edf~~tl~~~~~~~~~~~~~f~~sp~pGT~~~~~~~~~v~~~~~~~R~~~l~~l~~~~~~~~ 376 (445)
T PRK14340 306 IAGFCGETEEDHRATLSLMEEVRFDSAFMFYYSVRPGTLAARTLPDDVPEEVKKRRLQEIIDLQNGISAEL 376 (445)
T ss_pred EEECCCCCHHHHHHHHHHHHhcCCCEEeeEEecCCCCChhhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 9999999999999999999999998885 4532211 1222334677888888888877655
|
|
| >PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-23 Score=214.73 Aligned_cols=215 Identities=17% Similarity=0.258 Sum_probs=170.9
Q ss_pred cEEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCC-cc-c-HHHHHHHHHHHH
Q 017179 128 ATATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-DQ-G-SGHFAQTVRKLK 203 (376)
Q Consensus 128 ~tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~-d~-g-~~~~~elvr~Ik 203 (376)
.+.+|+.+++||+++|+||+++..++.. ..+++++++.++.+.+.|+++|.|+|++-..+. |. + ...|.++++.|.
T Consensus 211 ~~~a~v~I~~GC~~~CsFC~vp~~rG~~Rsr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~I~ 290 (509)
T PRK14327 211 NIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLMDEIR 290 (509)
T ss_pred CeEEEEEecCCCCCCCcCCcccccCCCCeeCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHHHHHH
Confidence 3789999999999999999999776554 589999999999999999999999998743331 10 1 134788888887
Q ss_pred hhC-CCcEEEEecCCCCCChHHHHHHHHcC--cccccccccc-hHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEE
Q 017179 204 ELK-PNMLIEALVPDFRGNNGCVREVAKSG--LNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKT 279 (376)
Q Consensus 204 ~~~-p~i~Ie~l~pd~~g~~e~l~~L~~aG--ld~i~h~lEt-v~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt 279 (376)
+.. +.+++..+.|+.. +++.++.++++| +..+..++|+ ++++++.|+ |+++.++++++++.+++.+|+ +.+.+
T Consensus 291 ~~~i~~ir~~s~~P~~i-~deli~~m~~~g~~~~~l~lgvQSgsd~vLk~M~-R~~t~e~~~~~v~~lr~~~p~-i~i~t 367 (509)
T PRK14327 291 KIDIPRVRFTTSHPRDF-DDHLIEVLAKGGNLVEHIHLPVQSGSTEVLKIMA-RKYTRESYLELVRKIKEAIPN-VALTT 367 (509)
T ss_pred hCCCceEEEeecCcccC-CHHHHHHHHhcCCccceEEeccCCCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCC-cEEee
Confidence 642 3344545556433 788999999998 5567888996 469999999 899999999999999998876 88999
Q ss_pred eEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCCC----CcccCChHHHHHHHHHHHHHhhhh
Q 017179 280 SIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMP----VSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 280 ~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~~----v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
+||+|| |||++|+.++++++++++++.++++.|. +|+..... |...++.+++++|.+++.++...+
T Consensus 368 diIvGfPgET~edf~~Tl~~v~~l~~d~~~~f~ysprpGT~a~~~~~~vp~~vk~~R~~~l~~l~~~~~~~~ 439 (509)
T PRK14327 368 DIIVGFPNETDEQFEETLSLYREVGFDHAYTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNALVNEYSAKK 439 (509)
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEeeeeCCCCCchHhCcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 9999999999999999999999998885 45322222 233334568899999888876544
|
|
| >PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-23 Score=209.52 Aligned_cols=213 Identities=18% Similarity=0.248 Sum_probs=169.0
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCC-c----ccHHHHHHHHHHH
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-D----QGSGHFAQTVRKL 202 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~-d----~g~~~~~elvr~I 202 (376)
+..|+.+++||+++|+||+++..+++. +.++++|+++++.+.+.|+++|+|+|.+-..+. | .+...|.++++.|
T Consensus 127 ~~a~i~isrGC~~~CsFC~ip~~rG~~~sr~~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~Ll~~l 206 (420)
T PRK14339 127 YKSLVNISIGCDKKCTYCIVPHTRGKEISIPMDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSDLLDKL 206 (420)
T ss_pred eEEEEEecCCCCCCCCcCCcccccCCCCCCCHHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHHHHHHH
Confidence 788999999999999999999876543 589999999999999999999999998743321 1 0123488899888
Q ss_pred HhhCCCc-EEEE--ecCCCCCChHHHHHHHHc--Ccccccccccc-hHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCce
Q 017179 203 KELKPNM-LIEA--LVPDFRGNNGCVREVAKS--GLNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL 276 (376)
Q Consensus 203 k~~~p~i-~Ie~--l~pd~~g~~e~l~~L~~a--Gld~i~h~lEt-v~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~ 276 (376)
.+. +++ ++.. +.|+.. +++.++.++++ |+..+..++|+ ++++++.|+ |+++.+++++.++.+++..|+ +.
T Consensus 207 ~~~-~g~~~ir~~s~~p~~~-~~ell~~~~~~~~~~~~l~iglQSgsd~vLk~M~-R~~t~~~~~~~v~~lr~~~p~-i~ 282 (420)
T PRK14339 207 SEI-EGLERIRFTSPHPLHM-DDKFLEEFAKNPKICKSIHMPLQSGSSEILKAMK-RGYTKEWFLNRAEKLRALVPE-VS 282 (420)
T ss_pred hcC-CCccEEEECCCChhhc-CHHHHHHHHcCCCccCceEeCCccCCHHHHHhcc-CCCCHHHHHHHHHHHHHHCCC-CE
Confidence 753 333 3443 344432 68899999887 46778888996 569999999 899999999999999998775 89
Q ss_pred EEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCC----CCcccCChHHHHHHHHHHHHHhhhh
Q 017179 277 TKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHM----PVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 277 tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~----~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
+.+++|+|| |||++|+.++++++++++++.++++.|. +|+.... +|...++.++.++|++++.++.+.+
T Consensus 283 i~~d~IvGfPgETeedf~~Tl~fl~~l~~~~~~~f~~sp~pGT~a~~~~~~v~~~~k~~R~~~l~~~~~~~~~~~ 357 (420)
T PRK14339 283 ISTDIIVGFPGESDKDFEDTMDVLEKVRFEQIFSFKYSPRPLTEAAAWKNQVDEEVASERLERLQNRHKEILDEI 357 (420)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHhcCCCEEeeEecCCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 9999999999999999999999998875 4432222 2333445677888888888877655
|
|
| >PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=208.68 Aligned_cols=230 Identities=12% Similarity=0.218 Sum_probs=179.5
Q ss_pred CccHHHHHHHHhhc---ChhhhhhhcCCCCcccccCCCCCCccEEEEe--eeCCccCCCCcCCCCCCCCC-CC--CCCch
Q 017179 89 GDKYVQIKKKLREL---KLHTVCEEAKCPNLGECWSGGETGTATATIM--ILGDTCTRGCRFCNVKTSRA-PP--PPDPD 160 (376)
Q Consensus 89 ~~~~~~~~~~l~~~---~L~tvce~A~cpn~~ec~~~~~~~~~tat~m--~i~d~C~~~C~FC~v~~~r~-~~--~l~~e 160 (376)
+-..+++..+|... .|..+.+.|+-.+.. .||+. ...|. .++|.|.++|.||+|+.... .. .+++|
T Consensus 45 ~Ls~eEal~LL~~~~~~~le~L~~~A~~ir~~-~~Gn~-----I~lfapLyiSN~C~n~C~YCgfs~~n~~i~r~~Ls~E 118 (469)
T PRK09613 45 GLSPEEAAVLLNVEDPELLEEIFEAAREIKEK-IYGNR-----IVLFAPLYISNYCVNNCVYCGFRRSNKEIKRKKLTQE 118 (469)
T ss_pred CCCHHHHHHHHcCCChhHHHHHHHHHHHHHHH-HcCCE-----EEEEEeccccCCCCCCCccCCCccCCCCCCceECCHH
Confidence 35578888888754 378888888766553 34543 44443 46999999999999997543 22 38999
Q ss_pred hHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCC---Cc-EEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 161 EPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP---NM-LIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 161 Ei~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p---~i-~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
||++.++++.+.|+++++|+||..+ ++.+.+++.++|+.|++..+ .+ .|.+-.+.+ +.+.++.|+++|++.+
T Consensus 119 EI~~ea~~~~~~G~~~i~LvsGe~p--~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~l--t~eey~~LkeaGv~~~ 194 (469)
T PRK09613 119 EIREEVKALEDMGHKRLALVAGEDP--PNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPT--TVENYKKLKEAGIGTY 194 (469)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCC--CCCCHHHHHHHHHHHHHhccccCcceeeEEEeecC--CHHHHHHHHHcCCCEE
Confidence 9999999999999999999998763 22348999999999997532 11 233333444 7899999999999999
Q ss_pred cccccchH-HHHHhhcC--CCCCHHHHHHHHHHHHHhCCCCce-EEEeEEEecCCCHHHHHHHHHHHHHc------CCcE
Q 017179 237 AHNIETVE-ELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLGCGETPDQVVSTMEKVRAA------GVDV 306 (376)
Q Consensus 237 ~h~lEtv~-~l~~~vr~--r~~t~e~~L~vl~~ak~~~p~Gi~-tkt~imvGlGET~ee~~e~L~~Lrel------~vd~ 306 (376)
.+++||.+ ++|++++| ++++|++++++++.|++ .|+. |++++|+|+||+.+|++.++..++.+ +++.
T Consensus 195 ~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~---aGi~~Vg~G~L~GLge~~~E~~~l~~hl~~L~~~~gvgp~t 271 (469)
T PRK09613 195 QLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAME---AGIDDVGIGVLFGLYDYKFEVLGLLMHAEHLEERFGVGPHT 271 (469)
T ss_pred EeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHH---cCCCeeCeEEEEcCCCCHHHHHHHHHHHHHHHHhhCCCCcc
Confidence 99999975 99999974 37899999999999999 6897 99999999999999999999999888 5677
Q ss_pred EEeecCCCCCCCCCCCccc---CChHHHHH
Q 017179 307 MTFGQYMRPSKRHMPVSEY---ITPEAFER 333 (376)
Q Consensus 307 v~~~qY~~P~~~~~~v~~~---v~pe~~~~ 333 (376)
|+| +.++| ..++|+... +.++.+..
T Consensus 272 Isv-prl~P-~~Gtpl~~~~~~vsd~e~lr 299 (469)
T PRK09613 272 ISV-PRLRP-ADGSDLENFPYLVSDEDFKK 299 (469)
T ss_pred ccc-cceec-CCCCCcccCCCCCCHHHHHH
Confidence 888 78899 467777433 44444433
|
|
| >PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=206.52 Aligned_cols=214 Identities=16% Similarity=0.196 Sum_probs=168.1
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCC-c-ccHHHHHHHHHHHHhh
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-D-QGSGHFAQTVRKLKEL 205 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~-d-~g~~~~~elvr~Ik~~ 205 (376)
+..|+.+++||+++|+||+++..++.. +.++++|+++++.+.+.|+++|+|+|++-..+. | .+...|.++++.|++.
T Consensus 124 ~~a~i~i~rGC~~~CsFC~ip~~rG~~rsrs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~ 203 (418)
T PRK14336 124 VSANVTIMQGCDNFCTYCVVPYRRGREKSRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSALHDI 203 (418)
T ss_pred eEEEEEeccCCCCCCccCCccccCCCCccCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHHHhc
Confidence 778999999999999999999876543 589999999999999999999999998733221 1 1124588999998764
Q ss_pred CCCcEEEE--ecCCCCCChHHHHHHHHcC--cccccccccc-hHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017179 206 KPNMLIEA--LVPDFRGNNGCVREVAKSG--LNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (376)
Q Consensus 206 ~p~i~Ie~--l~pd~~g~~e~l~~L~~aG--ld~i~h~lEt-v~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~ 280 (376)
....+|.. ..|+.. +++.++.+++.+ +..+..++|+ ++++++.|+ |+++.++++++++.+++..|+ +.+.++
T Consensus 204 ~~~~~ir~~~~~p~~i-~~ell~~l~~~~~~~~~l~lglQSgsd~vLk~M~-R~~~~~~~~~~i~~lr~~~pg-i~i~~d 280 (418)
T PRK14336 204 PGLLRIRFLTSHPKDI-SQKLIDAMAHLPKVCRSLSLPVQAGDDTILAAMR-RGYTNQQYRELVERLKTAMPD-ISLQTD 280 (418)
T ss_pred CCccEEEEeccChhhc-CHHHHHHHHhcCccCCceecCCCcCCHHHHHHhC-CCCCHHHHHHHHHHHHhhCCC-CEEEEE
Confidence 32235554 446433 688888888753 6777778996 569999999 899999999999999998775 999999
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCC-----CCcccCChHHHHHHHHHHHHHhhhh
Q 017179 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHM-----PVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 281 imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~-----~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
+|+|| |||++++.++++++++++++.++++.|. +|+.... +|+..++.++.+.|++++.+....+
T Consensus 281 ~IvGfPGET~edf~~tl~fi~~~~~~~~~v~~ysp~pGT~a~~~~~~~v~~~~k~~R~~~l~~~~~~~~~~~ 352 (418)
T PRK14336 281 LIVGFPSETEEQFNQSYKLMADIGYDAIHVAAYSPRPQTVAARDMADDVPVIEKKRRLKLIEDLQKETVGKA 352 (418)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCEEEeeecCCCCCChhHhhCccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999998886 4431111 1333344567888888888776655
|
|
| >PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=209.35 Aligned_cols=214 Identities=19% Similarity=0.265 Sum_probs=170.4
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCC-cc-c-----HHHHHHHHH
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-DQ-G-----SGHFAQTVR 200 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~-d~-g-----~~~~~elvr 200 (376)
+..|+.+++||+.+|+||+++..++.. ..++++++++++.+.+.|+++|+|++++-+++. |. + ...|.++++
T Consensus 168 ~~a~i~isrGCp~~CsFC~ip~~~G~~rsrs~e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~~Ll~ 247 (467)
T PRK14329 168 VSAFVSIMRGCDNMCTFCVVPFTRGRERSRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQLLE 247 (467)
T ss_pred cEEEEEeccCcccCCCCCccccccCCcccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccCCccccccccHHHHHH
Confidence 677999999999999999998766543 589999999999999999999999998754432 21 1 235889999
Q ss_pred HHHhhCCCcEEEE--ecCCCCCChHHHHHHHHc--Ccccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCc
Q 017179 201 KLKELKPNMLIEA--LVPDFRGNNGCVREVAKS--GLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGT 275 (376)
Q Consensus 201 ~Ik~~~p~i~Ie~--l~pd~~g~~e~l~~L~~a--Gld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi 275 (376)
.|.+..+..+|.. ..|+.. +++.++.|+++ |+..+..++|+. +++++.|+ |+++.++++++++.+++..|+ +
T Consensus 248 ~l~~~~~~~~ir~~~~~p~~l-~~ell~~m~~~~~g~~~i~iglQSgsd~vLk~m~-R~~t~~~~~~~i~~ir~~~~~-~ 324 (467)
T PRK14329 248 MVAEAVPDMRIRFSTSHPKDM-TDDVLEVMAKYDNICKHIHLPVQSGSDRILKLMN-RKYTREWYLDRIDAIRRIIPD-C 324 (467)
T ss_pred HHHhcCCCcEEEEecCCcccC-CHHHHHHHHhCCCCCCeEEeCCCcCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCC-C
Confidence 9887655555554 445433 68899999887 788888899965 59999999 899999999999999998765 8
Q ss_pred eEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCC-----CCcccCChHHHHHHHHHHHHHhhhh
Q 017179 276 LTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHM-----PVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 276 ~tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~-----~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
.+.+++|+|| |||++++.++++++++++++.++++.|. +|+.... .|...+..++..+|++++.++...+
T Consensus 325 ~i~~d~IvGfPgET~edf~~tl~~i~~l~~~~~~v~~~sp~pGT~~~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~ 401 (467)
T PRK14329 325 GISTDMIAGFPTETEEDHQDTLSLMEEVGYDFAFMFKYSERPGTYAARKLEDDVPEEVKKRRLNEIIALQQELSLER 401 (467)
T ss_pred EEEEeEEEeCCCCCHHHHHHHHHHHHhhCCCeEeeeEecCCCCChhhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999 9999999999999999999999998886 4532211 1222333456788888888776655
|
|
| >PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=208.34 Aligned_cols=215 Identities=15% Similarity=0.245 Sum_probs=170.4
Q ss_pred cEEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCC--c--ccHHHHHHHHHHH
Q 017179 128 ATATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA--D--QGSGHFAQTVRKL 202 (376)
Q Consensus 128 ~tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~--d--~g~~~~~elvr~I 202 (376)
.+..|+.+++||+.+|+||+++..++.. +.++++++++++.+.+.|+++|+|+|++-..+. | +....|.+++++|
T Consensus 151 ~~~~~i~I~rGC~~~CsfC~~p~~rG~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~~l 230 (455)
T PRK14335 151 SFQSFIPIMNGCNNFCSYCIVPYVRGREISRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLRHI 230 (455)
T ss_pred CceEEEEhhcCCCCCCCCCCcccCCCCCccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccccCCccCHHHHHHHH
Confidence 3678899999999999999999766543 588999999999999999999999998744331 1 1123588899888
Q ss_pred Hhh---CCCc-EEEE--ecCCCCCChHHHHHHHH--cCcccccccccc-hHHHHHhhcCCCCCHHHHHHHHHHHHHhCCC
Q 017179 203 KEL---KPNM-LIEA--LVPDFRGNNGCVREVAK--SGLNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPA 273 (376)
Q Consensus 203 k~~---~p~i-~Ie~--l~pd~~g~~e~l~~L~~--aGld~i~h~lEt-v~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~ 273 (376)
.+. .+++ ++.. +.|+.. +++.++.|++ +|+..+..++|+ ++++++.|+ |+++.++++++++.+++..|+
T Consensus 231 ~~~~~~~~~i~~ir~~s~~p~~i-~~ell~~m~~~~~gc~~l~iglQSgsd~vLk~m~-R~~t~e~~~~~v~~ir~~~pg 308 (455)
T PRK14335 231 VRRAEVTDQIRWIRFMSSHPKDL-SDDLIATIAQESRLCRLVHLPVQHGSNGVLKRMN-RSYTREHYLSLVGKLKASIPN 308 (455)
T ss_pred HHhhcccCCceEEEEeecCcccC-CHHHHHHHHhCCCCCCeEEEccCcCCHHHHHHcC-CCCCHHHHHHHHHHHHHhCCC
Confidence 532 2222 5544 445533 6888999988 478888889996 569999999 899999999999999998775
Q ss_pred CceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCC----CCcccCChHHHHHHHHHHHHHhhhh
Q 017179 274 GTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHM----PVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 274 Gi~tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~----~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
+.+.+++|+|| |||++++.++++++++++++.++++.|. +|+.... .|...++.++.++|++++.++...+
T Consensus 309 -i~i~~d~IvGfPgET~edf~~Tl~~i~~l~~~~~~~~~~sp~pGT~~~~~~~~v~~~~k~~R~~~l~~~~~~~~~~~ 385 (455)
T PRK14335 309 -VALSTDILIGFPGETEEDFEQTLDLMREVEFDSAFMYHYNPREGTPAYDFPDRIPDEVKIARLQRVIALQMSITLKK 385 (455)
T ss_pred -CEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEEecCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999999999999886 5532222 2334445678899999988877665
|
|
| >PRK06245 cofG FO synthase subunit 1; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-22 Score=199.62 Aligned_cols=205 Identities=16% Similarity=0.225 Sum_probs=146.7
Q ss_pred EEEE-----eeeCCccCCCCcCCCCCCCCCC-CCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCC---------cccHH
Q 017179 129 TATI-----MILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA---------DQGSG 193 (376)
Q Consensus 129 tat~-----m~i~d~C~~~C~FC~v~~~r~~-~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~---------d~g~~ 193 (376)
.+|| +.++|+|+.+|+||+++..++. ..+++||+++.++++.+.|+++|+||||+.+++. +.|..
T Consensus 7 ~vt~~~~~~i~~Tn~C~~~C~fC~~~~~~~~~~~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~~~~~~~~~~~~g~~ 86 (336)
T PRK06245 7 IVTYSRNVFIPLTYECRNRCGYCTFRRDPGQPSLLSPEEVKEILRRGADAGCTEALFTFGEVPDESYERIKEQLAEMGYS 86 (336)
T ss_pred eeEeecceeeeccccccCCCccCCCcCCCCccCcCCHHHHHHHHHHHHHCCCCEEEEecCCCCccchhhhhhhhhhhhHH
Confidence 5565 4579999999999999986533 3599999999999999999999999999886553 11234
Q ss_pred HHHHHHHHHHhhCC--CcEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhh---cCCCCCHHHHHHHHHHH
Q 017179 194 HFAQTVRKLKELKP--NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAV---RDHRANFKQSLDVLMMA 267 (376)
Q Consensus 194 ~~~elvr~Ik~~~p--~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~v---r~r~~t~e~~L~vl~~a 267 (376)
.+.+.+++|.+... ++... +.|... +++.++.|+++|+. +.+++|+.. .+++.| + ++.++++++++++.+
T Consensus 87 ~~~~~i~~i~~~~~~~g~~~~-~~~~~l-t~e~i~~Lk~ag~~-l~~~~et~~e~l~~~v~~~~-~~~~~~~~l~~i~~a 162 (336)
T PRK06245 87 SILEYLYDLCELALEEGLLPH-TNAGIL-TREEMEKLKEVNAS-MGLMLEQTSPRLLNTVHRGS-PGKDPELRLETIENA 162 (336)
T ss_pred HHHHHHHHHHHHHhhcCCCcc-ccCCCC-CHHHHHHHHHhCCC-CCCCccccchhhHHhhccCC-CCCCHHHHHHHHHHH
Confidence 45556655544211 11111 222221 68889999998865 677889764 777666 4 467899999999999
Q ss_pred HHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcC-----CcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHh
Q 017179 268 KDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAG-----VDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMG 342 (376)
Q Consensus 268 k~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~-----vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~g 342 (376)
++ .|+.++++||+|+|||++|++++|..+++++ ++.+.+.. +.|. .++++.....+...+.++.+|..+-
T Consensus 163 ~~---~Gi~~~~~~i~G~gEt~ed~~~~l~~l~~l~~~~gg~~~~~~~~-f~P~-~~T~~~~~~~~s~~e~l~~ia~~Rl 237 (336)
T PRK06245 163 GK---LKIPFTTGILIGIGETWEDRAESLEAIAELHERYGHIQEVIIQN-FSPK-PGIPMENHPEPSLEEMLRVVALARL 237 (336)
T ss_pred HH---cCCceeeeeeeECCCCHHHHHHHHHHHHHHHHhhCCCcEEecCC-CcCC-CCCCcccCCCcCHHHHHHHHHHHHH
Confidence 98 5799999999999999999999999999997 45566644 4573 4555544333444455555555433
|
|
| >PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-22 Score=206.29 Aligned_cols=214 Identities=18% Similarity=0.282 Sum_probs=170.3
Q ss_pred cEEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCC-Cc--ccHHHHHHHHHHHH
Q 017179 128 ATATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDL-AD--QGSGHFAQTVRKLK 203 (376)
Q Consensus 128 ~tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl-~d--~g~~~~~elvr~Ik 203 (376)
.+..|+.+++||+++|+||+++..+++. +.+++++++.++.+.+.|+++|+|++.+-..+ .| ++...|.++++.|.
T Consensus 147 ~~~a~v~i~rGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~~l~ 226 (446)
T PRK14337 147 PASAFVNIMQGCDNFCAYCIVPYTRGRQKSRSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLLHKVA 226 (446)
T ss_pred CcEEEEEeccCCCCCCcCCCcccCCCCCeeCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHHHHHH
Confidence 3677899999999999999998766544 58999999999999999999999999864322 11 11135888998887
Q ss_pred hhCCCc-EEEE--ecCCCCCChHHHHHHHHc--Ccccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceE
Q 017179 204 ELKPNM-LIEA--LVPDFRGNNGCVREVAKS--GLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLT 277 (376)
Q Consensus 204 ~~~p~i-~Ie~--l~pd~~g~~e~l~~L~~a--Gld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~t 277 (376)
+. +++ +|.. +.|+.. +++.++.+++. |+..+..++|+. +++++.|+ |+++.++++++++.+++..|+ +.+
T Consensus 227 ~~-~g~~~ir~~~~~p~~i-~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~-R~~t~e~~~~~v~~lr~~~~~-i~i 302 (446)
T PRK14337 227 AL-PGLERLRFTTPHPKDI-APEVIEAFGELPNLCPRLHLPLQSGSDRILKAMG-RKYDMARYLDIVTDLRAARPD-IAL 302 (446)
T ss_pred hc-CCCcEEEEccCCcccC-CHHHHHHHHhCCcccCeEEECCCCCCHHHHHhCC-CCCCHHHHHHHHHHHHHhCCC-CeE
Confidence 64 333 4554 445433 68889989884 477788889965 69999999 899999999999999998765 899
Q ss_pred EEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCCC----CcccCChHHHHHHHHHHHHHhhhh
Q 017179 278 KTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMP----VSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 278 kt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~~----v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
.+++|+|| |||++|+.++++++++++++.++++.|. +|+..... |...++.++.++|++++.++...+
T Consensus 303 ~~d~IvG~PgET~ed~~~tl~~l~~~~~~~~~~f~ysp~pgT~a~~~~~~v~~~vk~~R~~~l~~~~~~~~~~~ 376 (446)
T PRK14337 303 TTDLIVGFPGETEEDFEQTLEAMRTVGFASSFSFCYSDRPGTRAEMLPGKVPEEVKSARLARLQELQNELTERW 376 (446)
T ss_pred EEeEEEECCCCCHHHHHHHHHHHHhcCCCeeEEEecCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999998886 66433322 444455678899999988877665
|
|
| >TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-22 Score=203.95 Aligned_cols=214 Identities=16% Similarity=0.259 Sum_probs=167.3
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcc--cHHHHHHHHHHHHhh
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQ--GSGHFAQTVRKLKEL 205 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~--g~~~~~elvr~Ik~~ 205 (376)
...|+.+++||+.+|+||+++..++.. ..++++|+++++.+.+.|+++|+|++++-..+.+. +...+.++++.|++.
T Consensus 138 ~~~~i~isrGCp~~CsfC~~~~~~g~~r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~ 217 (414)
T TIGR01579 138 TRAFIKVQDGCNFFCSYCIIPFARGRSRSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQI 217 (414)
T ss_pred eEEEEEeccCcCCCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhcC
Confidence 566788999999999999998765443 58999999999999999999999999864333210 124588899988764
Q ss_pred CCCcEEEE--ecCCCCCChHHHHHHHHcC--cccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017179 206 KPNMLIEA--LVPDFRGNNGCVREVAKSG--LNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (376)
Q Consensus 206 ~p~i~Ie~--l~pd~~g~~e~l~~L~~aG--ld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~ 280 (376)
....++.. +.|+.. +++.++.|+++| ...+..++|+. +++++.|+ |+++.+++++.++.+++..+ |+.+.++
T Consensus 218 ~~~~~ir~~~~~p~~~-~~ell~~m~~~~~~~~~l~lglESgs~~vLk~m~-R~~~~~~~~~~v~~l~~~~~-gi~i~~~ 294 (414)
T TIGR01579 218 PGIKRIRLSSIDPEDI-DEELLEAIASEKRLCPHLHLSLQSGSDRVLKRMR-RKYTRDDFLKLVNKLRSVRP-DYAFGTD 294 (414)
T ss_pred CCCcEEEEeCCChhhC-CHHHHHHHHhcCccCCCeEECCCcCChHHHHhcC-CCCCHHHHHHHHHHHHHhCC-CCeeeee
Confidence 32223443 445432 788899998887 67788889975 59999999 89999999999999999665 5999999
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCC----CCcccCChHHHHHHHHHHHHHhhhh
Q 017179 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHM----PVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 281 imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~----~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
+|+|| |||+|++.++++++++++++.++++.|. .|+.... ++...+..++.++|++++.++...+
T Consensus 295 ~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~ 365 (414)
T TIGR01579 295 IIVGFPGESEEDFQETLRMVKEIEFSHLHIFPYSARPGTPASTMKDKVPETIKKERVKRLKELAEKNYQEF 365 (414)
T ss_pred EEEECCCCCHHHHHHHHHHHHhCCCCEEEeeecCCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999998775 3432211 1333344567888888888877755
|
This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium. |
| >TIGR00433 bioB biotin synthetase | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-22 Score=192.81 Aligned_cols=198 Identities=16% Similarity=0.269 Sum_probs=151.0
Q ss_pred eee-CCccCCCCcCCCCCCCCC---C--CCCCchhHHHHHHHHHHCCCcEEEEE-eeeCCCCCcccHHHHHHHHHHHHhh
Q 017179 133 MIL-GDTCTRGCRFCNVKTSRA---P--PPPDPDEPTNVAEAIASWGLDYVVIT-SVDRDDLADQGSGHFAQTVRKLKEL 205 (376)
Q Consensus 133 m~i-~d~C~~~C~FC~v~~~r~---~--~~l~~eEi~~~a~al~~~G~~eIvLT-sg~r~dl~d~g~~~~~elvr~Ik~~ 205 (376)
+.+ |++|+.+|.||.++.... . ..++++|+++.++.+.+.|++.++|+ +|..++..+ ...+++.+..+++.
T Consensus 32 ~~i~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~~~--~~~~~~~i~~~~~~ 109 (296)
T TIGR00433 32 MNIKSGGCPEDCKYCSQSSRSKTGLPIERLKKVDEVLEEARKAKAAGATRFCLVASGRGPKDRE--FMEYVEAMVQIVEE 109 (296)
T ss_pred EecccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEEecCCCChHH--HHHHHHHHHHHHHh
Confidence 444 999999999999976421 1 13789999999999999999988664 443322111 12233333333232
Q ss_pred CCCcEEEEecCCCCCChHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec
Q 017179 206 KPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 285 (376)
Q Consensus 206 ~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl 285 (376)
. ++.+.+..+.. ++|.++.|+++|++.+.+++|+.++++++++ ++++++++++.++.+++ .|+.+.+++|+|+
T Consensus 110 ~-~i~~~~~~g~~--~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~-~~~s~~~~~~ai~~l~~---~Gi~v~~~~i~Gl 182 (296)
T TIGR00433 110 M-GLKTCATLGLL--DPEQAKRLKDAGLDYYNHNLDTSQEFYSNII-STHTYDDRVDTLENAKK---AGLKVCSGGIFGL 182 (296)
T ss_pred C-CCeEEecCCCC--CHHHHHHHHHcCCCEEEEcccCCHHHHhhcc-CCCCHHHHHHHHHHHHH---cCCEEEEeEEEeC
Confidence 2 45554433333 7899999999999999999997679999999 68999999999999999 5899999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHH
Q 017179 286 GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEM 341 (376)
Q Consensus 286 GET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~ 341 (376)
|||.+|+.++++++++++++.+++. .+.| ..++++..+..++..+.++.++..+
T Consensus 183 ~et~~d~~~~~~~l~~l~~~~i~l~-~l~p-~~gT~l~~~~~~s~~~~~~~ia~~r 236 (296)
T TIGR00433 183 GETVEDRIGLALALANLPPESVPIN-FLVK-IKGTPLADNKELSADDALKTIALAR 236 (296)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEee-eeEE-cCCCccCCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999884 4467 3578887766666677777777654
|
Catalyzes the last step of the biotin biosynthesis pathway. |
| >PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5e-22 Score=206.65 Aligned_cols=212 Identities=19% Similarity=0.298 Sum_probs=165.2
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCC-Cc-ccHHHHHHHHHHHHhh
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDL-AD-QGSGHFAQTVRKLKEL 205 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl-~d-~g~~~~~elvr~Ik~~ 205 (376)
+..|+.+++||+++|+||+++..++.. ..++++|+++++.+.+.|+++|+|++.+-..+ .| .+...|.++++.+.+.
T Consensus 157 ~~a~v~isrGCp~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~l~~i 236 (502)
T PRK14326 157 YAAWVSISVGCNNTCTFCIVPSLRGKEKDRRPGDILAEVQALVDEGVLEVTLLGQNVNAYGVSFGDRGAFSKLLRACGEI 236 (502)
T ss_pred ceEEEEEccCCCCCCccCceeccCCCcccCCHHHHHHHHHHHHHCCCceEEEEeecccccccCCCCHHHHHHHHHHHHhc
Confidence 567899999999999999999876544 58999999999999999999999999864322 11 1134688888888764
Q ss_pred CC--CcEEEEecCCCCCChHHHHHHHHcC--cccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017179 206 KP--NMLIEALVPDFRGNNGCVREVAKSG--LNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (376)
Q Consensus 206 ~p--~i~Ie~l~pd~~g~~e~l~~L~~aG--ld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~ 280 (376)
.+ .+++..+.|+.. +++.++.|+++| ...+..++|+. +++++.|+ |+++.++++++++.+++..|+ +.+.++
T Consensus 237 ~~l~~ir~~~~~p~~~-~~ell~~m~~~g~~~~~l~lglQSgsd~iLk~m~-R~~t~~~~~~~v~~lr~~~~~-i~i~~~ 313 (502)
T PRK14326 237 DGLERVRFTSPHPAEF-TDDVIEAMAETPNVCPQLHMPLQSGSDRVLRAMR-RSYRSERFLGILEKVRAAMPD-AAITTD 313 (502)
T ss_pred CCccEEEEeccChhhC-CHHHHHHHHhcCCcCCcEEeccCCCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCC-CeEEEE
Confidence 32 233333445432 788999999987 67778889964 69999999 899999999999999997664 889999
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcc-------cCChHHHHHHHHHHHHHhhhh
Q 017179 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSE-------YITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 281 imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~-------~v~pe~~~~l~~~a~~~gf~~ 345 (376)
||+|| |||++|+.++++++++++++.+.++.|. | ..++++.+ .+..+++++|.+++.++...+
T Consensus 314 ~IvGfPgET~edf~~Tl~~i~~~~~~~~~~f~~s-p-~pGT~~~~~~~~v~~~v~~~R~~~l~~~~~~~~~~~ 384 (502)
T PRK14326 314 IIVGFPGETEEDFQATLDVVREARFSSAFTFQYS-K-RPGTPAAEMEGQLPKAVVQERYERLVALQERISLEE 384 (502)
T ss_pred EEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeec-C-CCCChHHhCcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999998888774 4 23444332 233457777777776655543
|
|
| >PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.9e-22 Score=203.48 Aligned_cols=215 Identities=13% Similarity=0.248 Sum_probs=166.8
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCC-cccHHHHHHHHHHHHhhC
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-DQGSGHFAQTVRKLKELK 206 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~-d~g~~~~~elvr~Ik~~~ 206 (376)
+..|+.+++||+.+|+||+++..+++. ..++++++++++.+.+.|+++|+|++.+-..+. |.+...|.++++.|.+..
T Consensus 146 ~~a~v~i~rGC~~~CsFC~~p~~~g~~rsr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~~~~~~Ll~~l~~~~ 225 (437)
T PRK14331 146 YCAYVTVMRGCDKKCTYCVVPKTRGKERSRRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGDVPFSELLYAVAEID 225 (437)
T ss_pred cEEEEEeccCcCCCCccCCcccCCCCcccCCHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCCCCHHHHHHHHhcCC
Confidence 677889999999999999999766543 589999999999999999999999998643221 111124788888887653
Q ss_pred C--CcEEEEecCCCCCChHHHHHHHHc--Ccccccccccc-hHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE
Q 017179 207 P--NMLIEALVPDFRGNNGCVREVAKS--GLNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI 281 (376)
Q Consensus 207 p--~i~Ie~l~pd~~g~~e~l~~L~~a--Gld~i~h~lEt-v~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~i 281 (376)
+ .+.+....|... +++.++.++++ |+..+..++|+ ++++++.|+ |+++.++++++++.+++..| |+.+.+++
T Consensus 226 g~~~i~~~~~~p~~l-~~ell~~~~~~~~~~~~l~igiqSgsd~vLk~m~-R~~t~~~~~~~v~~lr~~~~-gi~i~~d~ 302 (437)
T PRK14331 226 GVERIRFTTGHPRDL-DEDIIKAMADIPQVCEHLHLPFQAGSDRILKLMD-RGYTKEEYLEKIELLKEYIP-DITFSTDI 302 (437)
T ss_pred CccEEEEeccCcccC-CHHHHHHHHcCCccCCceecccccCChHHHHHcC-CCCCHHHHHHHHHHHHHhCC-CCEEecCE
Confidence 2 233334445432 78999999988 47888888996 569999999 89999999999999999776 49999999
Q ss_pred EEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCCCCc----ccCChHHHHHHHHHHHHHhhhhh
Q 017179 282 MLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVS----EYITPEAFERYRALGMEMGFRYV 346 (376)
Q Consensus 282 mvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~~v~----~~v~pe~~~~l~~~a~~~gf~~~ 346 (376)
|+|| |||++|+.++++++++++++.++++.|. +|+.....+. ..++.++...+.+++.++.+.+.
T Consensus 303 IvG~PgET~ed~~~tl~~l~~l~~~~i~~f~~sp~pGT~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~ 373 (437)
T PRK14331 303 IVGFPTETEEDFEETLDVLKKVEFEQVFSFKYSPRPGTPAAYMEGQEPDEVKTKRMNRLLELQKEITFKKA 373 (437)
T ss_pred EEECCCCCHHHHHHHHHHHHhcCcceeeeeEecCCCCcchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 9999999999999999999999998775 4432221222 22334567888888888777653
|
|
| >TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.7e-22 Score=202.11 Aligned_cols=214 Identities=16% Similarity=0.210 Sum_probs=166.8
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCC-C-c--ccHHHHHHHHHHHH
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDL-A-D--QGSGHFAQTVRKLK 203 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl-~-d--~g~~~~~elvr~Ik 203 (376)
+..|+.+++||+++|+||+++..+++. ..++++++++++.+.+.|+++|+|+|++-..+ . | ++...|.++++.|.
T Consensus 145 ~~~~v~i~rGC~~~CsfC~~~~~~G~~rsr~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~g~d~~~~~~~l~~Ll~~l~ 224 (438)
T TIGR01574 145 YKSFINIMIGCNKFCTYCIVPYTRGDEISRPFDDILQEVQKLAEKGVREITLLGQNVNAYRGKDFEGKTMDFSDLLRELS 224 (438)
T ss_pred eeEEeehhcCCCCCCCCCCeeeecCCCcccCHHHHHHHHHHHHHcCCeEEEEEecccCCccCCCCCCCcccHHHHHHHHH
Confidence 677899999999999999998766543 58999999999999999999999999864333 1 1 12235889999987
Q ss_pred hhCCCcEEEE--ecCCCCCChHHHHHHHHcC--cccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEE
Q 017179 204 ELKPNMLIEA--LVPDFRGNNGCVREVAKSG--LNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTK 278 (376)
Q Consensus 204 ~~~p~i~Ie~--l~pd~~g~~e~l~~L~~aG--ld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tk 278 (376)
+.....++.. +.|+.. +++.++.|+++| ...+..++|+. +++++.|+ |+++.++++++++.+++..|+ +.+.
T Consensus 225 ~~~~~~~ir~~~~~p~~l-~~ell~~l~~~g~~~~~l~iglQSgsd~vLk~m~-R~~t~~~~~~~v~~ir~~~~~-i~i~ 301 (438)
T TIGR01574 225 TIDGIERIRFTSSHPLDF-DDDLIEVFANNPKLCKSMHLPVQSGSSEILKLMK-RGYTREWYLNLVRKLRAACPN-VSIS 301 (438)
T ss_pred hcCCceEEEEecCCcccC-CHHHHHHHHhCCCccCceeeCCCcCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCC-CeEe
Confidence 6432224443 345432 788999999998 78888889965 69999999 899999999999999997764 8899
Q ss_pred EeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCCCCcccCC----hHHHHHHHHHHHHHhhhh
Q 017179 279 TSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYIT----PEAFERYRALGMEMGFRY 345 (376)
Q Consensus 279 t~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~~v~~~v~----pe~~~~l~~~a~~~gf~~ 345 (376)
+++|+|| |||++|+.++++++++++++.+++++|. +|+.....+...+. .++...|++++.++...+
T Consensus 302 ~d~IvG~PgEt~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~ 374 (438)
T TIGR01574 302 TDIIVGFPGETEEDFEETLDLLREVEFDSAFSFIYSPRPGTPAADMPDQIPEEIKKRRLQRLQARHNEILDKK 374 (438)
T ss_pred eCEEEeCCCCCHHHHHHHHHHHHhcCCCeeeeEEecCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 9999999999999999999999998885 44322222222232 356777888877766554
|
Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme. |
| >PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.2e-22 Score=202.81 Aligned_cols=214 Identities=16% Similarity=0.253 Sum_probs=166.2
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCC-cc-cHHHHHHHHHHHHhh
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-DQ-GSGHFAQTVRKLKEL 205 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~-d~-g~~~~~elvr~Ik~~ 205 (376)
+..|+.+++||+++|+||+++..+++. ..+++++++.++.+.+.|+++|+|+|++-.++. |. +...|.++++.|.+.
T Consensus 147 ~~~~i~i~rGC~~~CsfC~~p~~~g~~Rsr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~ 226 (439)
T PRK14328 147 VKAFVTIMYGCNNFCTYCIVPYVRGRERSRKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEEKIDFADLLRRVNEI 226 (439)
T ss_pred cEEEEEHHhCcCCCCCCCCcccccCCcccCCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCCCcCHHHHHHHHHhc
Confidence 667899999999999999999766543 589999999999999999999999998743321 10 113478888888764
Q ss_pred CCCcEEEE--ecCCCCCChHHHHHHHHcC--cccccccccc-hHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017179 206 KPNMLIEA--LVPDFRGNNGCVREVAKSG--LNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (376)
Q Consensus 206 ~p~i~Ie~--l~pd~~g~~e~l~~L~~aG--ld~i~h~lEt-v~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~ 280 (376)
....++.. +.|+.. +++.++.|+++| +..+..++|+ ++++++.|+ |+++.+++++.++.+++.+|. +.+.++
T Consensus 227 ~~~~~ir~~~~~P~~i-~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~-R~~~~~~~~~~i~~lr~~~~~-i~i~~d 303 (439)
T PRK14328 227 DGLERIRFMTSHPKDL-SDDLIEAIADCDKVCEHIHLPVQSGSNRILKKMN-RHYTREYYLELVEKIKSNIPD-VAITTD 303 (439)
T ss_pred CCCcEEEEecCChhhc-CHHHHHHHHhCCCcCceeeeCCCcCCHHHHHhCC-CCCCHHHHHHHHHHHHHhCCC-CEEEEE
Confidence 22224553 446433 788999999886 7778888996 469999999 899999999999999998765 889999
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCCCCcccC----ChHHHHHHHHHHHHHhhhh
Q 017179 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYI----TPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 281 imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~~v~~~v----~pe~~~~l~~~a~~~gf~~ 345 (376)
+|+|| |||++|+.++++++++++++.++++.|. +|+.....+...+ ..++++.|++++.++...+
T Consensus 304 ~IvG~PgET~ed~~~tl~~i~~l~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~ 374 (439)
T PRK14328 304 IIVGFPGETEEDFEETLDLVKEVRYDSAFTFIYSKRKGTPAAKMEDQVPEDVKHERFNRLVELQNKISLEK 374 (439)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCcccceEecCCCCChhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999998885 4432222222233 3456788888888776654
|
|
| >PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=200.31 Aligned_cols=211 Identities=14% Similarity=0.271 Sum_probs=163.8
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCC-cc--------c---HHHH
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-DQ--------G---SGHF 195 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~-d~--------g---~~~~ 195 (376)
...|+.+++||+.+|+||+++..++.. ..++++++++++.+.+.|+++|+|+|.|-..+. |. | ..++
T Consensus 139 ~~a~v~isrGCp~~CsFC~ip~~~G~~rsr~~e~Vv~Ei~~l~~~g~kei~l~~~d~~~yg~d~~~~~~~~~~~~~~~~~ 218 (440)
T PRK14862 139 HYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDVLREAERLVKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPVKTRM 218 (440)
T ss_pred cEEEEEeccCCCCCCccCCcccccCCccccCHHHHHHHHHHHHHCCCceEEEEecChhhhccccccccccccccchhhHH
Confidence 667889999999999999999766543 589999999999999999999999998632110 10 1 2578
Q ss_pred HHHHHHHHhhCCCcEEE--EecCCCCCChHHHHHHHHcCcc--cccccccc-hHHHHHhhcCCCCCHHHHHHHHHHHHHh
Q 017179 196 AQTVRKLKELKPNMLIE--ALVPDFRGNNGCVREVAKSGLN--VFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDY 270 (376)
Q Consensus 196 ~elvr~Ik~~~p~i~Ie--~l~pd~~g~~e~l~~L~~aGld--~i~h~lEt-v~~l~~~vr~r~~t~e~~L~vl~~ak~~ 270 (376)
.++++.|.+. ++++. .+.|... +++.++.+++ |.- .+..++|+ ++++++.|+ ++++++++++.++.+++.
T Consensus 219 ~~Ll~~l~~~--~~~~r~~~~~p~~~-~dell~~m~~-g~~~~~l~IglESgs~~vLk~m~-r~~~~~~~~~~i~~lr~~ 293 (440)
T PRK14862 219 TDLCEALGEL--GAWVRLHYVYPYPH-VDEVIPLMAE-GKILPYLDIPFQHASPRVLKRMK-RPASVEKTLERIKKWREI 293 (440)
T ss_pred HHHHHHHHhc--CCEEEEecCCCCcC-CHHHHHHHhc-CCCccccccccccCCHHHHHhcC-CCCCHHHHHHHHHHHHHH
Confidence 9999999876 34444 3555432 5688888887 542 34557895 469999999 899999999999999998
Q ss_pred CCCCceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCCCCcccCC----hHHHHHHHHHHHHHhhh
Q 017179 271 VPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYIT----PEAFERYRALGMEMGFR 344 (376)
Q Consensus 271 ~p~Gi~tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~~v~~~v~----pe~~~~l~~~a~~~gf~ 344 (376)
.|. +.+.+++|+|| |||++++.++++++++++++.++++.|. +|+.....+...++ .+++++|.+++.++...
T Consensus 294 ~~~-i~i~t~~IvGfPgET~edf~~tl~fi~e~~~d~~~~f~ysP~pGT~a~~~~~~v~~~~~~~r~~~l~~~~~~~~~~ 372 (440)
T PRK14862 294 CPD-LTIRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKYSPVEGATANDLPDQVPEEVKEERWARFMEVQQQISAA 372 (440)
T ss_pred CCC-ceecccEEEECCCCCHHHHHHHHHHHHHcCCCeeeeEeecCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 765 88999999999 9999999999999999999999998886 45332221233344 45678888888887766
Q ss_pred h
Q 017179 345 Y 345 (376)
Q Consensus 345 ~ 345 (376)
+
T Consensus 373 ~ 373 (440)
T PRK14862 373 R 373 (440)
T ss_pred H
Confidence 5
|
|
| >PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=199.67 Aligned_cols=212 Identities=14% Similarity=0.227 Sum_probs=164.6
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCC-cc-cHHHHHHHHHHHHhh
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-DQ-GSGHFAQTVRKLKEL 205 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~-d~-g~~~~~elvr~Ik~~ 205 (376)
+..|+.+++||+.+|+||+++..++.. ..++++++++++.+.+.|+++|+|++++-..+. |. +...+.++++.+.+.
T Consensus 140 ~~~~v~i~rGC~~~CsFC~ip~~~G~~rsr~~e~Iv~Ei~~l~~~g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~~~~~ 219 (434)
T PRK14330 140 HHAWVTIIYGCNRFCTYCIVPYTRGREKSRPMEDILEEVEKLAKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEASKI 219 (434)
T ss_pred cEEEEEcccCCCCCCCCCceECcCCCCccCCHHHHHHHHHHHHHCCCcEEEEEEecccccccCCCCCccHHHHHHHHHhc
Confidence 667888999999999999998766543 589999999999999999999999998643321 10 123578888877654
Q ss_pred CCC--cEEEEecCCCCCChHHHHHHHHcC--cccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017179 206 KPN--MLIEALVPDFRGNNGCVREVAKSG--LNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (376)
Q Consensus 206 ~p~--i~Ie~l~pd~~g~~e~l~~L~~aG--ld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~ 280 (376)
.+. +++....|+.. +++.++.++++| +..+..++|+. +++++.|+ |+++.+++.++++.+++..|+ +.+.++
T Consensus 220 ~~~~~~~~~~~~p~~~-~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~-R~~~~~~~~~~i~~lr~~~~~-i~i~~d 296 (434)
T PRK14330 220 EGIERIWFLTSYPTDF-SDELIEVIANSPKVAKSIHLPVQSGSNRILKLMN-RRYTREEYLELIEKIRSKVPD-ASISSD 296 (434)
T ss_pred CCceEEEEecCChhhc-CHHHHHHHhcCCcccCceecCcCCCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCC-CEEEEE
Confidence 322 23333345322 688899998887 56677889974 69999999 899999999999999998765 899999
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCc----ccCC----hHHHHHHHHHHHHHhhhh
Q 017179 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVS----EYIT----PEAFERYRALGMEMGFRY 345 (376)
Q Consensus 281 imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~----~~v~----pe~~~~l~~~a~~~gf~~ 345 (376)
+|+|| |||++++.++++++++++++.++++.|. | ..+++.. +.++ .++..+|.+++.++...+
T Consensus 297 ~IvGfPgET~edf~~tl~fi~~~~~~~~~~~~~s-p-~pGT~~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~ 368 (434)
T PRK14330 297 IIVGFPTETEEDFMETVDLVEKAQFERLNLAIYS-P-REGTVAWKYYKDDVPYEEKVRRMQYLLNLQKRINRKL 368 (434)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCEEeeeecc-C-CCCChhhhhCccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999998886 3 2344432 2233 356778888888877655
|
|
| >PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-21 Score=199.65 Aligned_cols=212 Identities=16% Similarity=0.282 Sum_probs=163.7
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCC-c-ccHHHHHHHHHHHHhh
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-D-QGSGHFAQTVRKLKEL 205 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~-d-~g~~~~~elvr~Ik~~ 205 (376)
...|+.+++||+.+|+||.++..++.. ..++++++++++.+.+.|+++|+|+|++-..+. | .+...|.++++.|++.
T Consensus 155 ~~~~i~I~rGC~~~CsfC~~p~~~G~~rsr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~ 234 (459)
T PRK14338 155 VTVHVPIIYGCNMSCSYCVIPLRRGRERSRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEI 234 (459)
T ss_pred eEEEEEcccCCCCCCCcCCeeccCCCCccCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhc
Confidence 678899999999999999999766543 589999999999999999999999997633221 1 0134689999999875
Q ss_pred CCCc-EEE--EecCCCCCChHHHHHHHHc--Ccccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEE
Q 017179 206 KPNM-LIE--ALVPDFRGNNGCVREVAKS--GLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKT 279 (376)
Q Consensus 206 ~p~i-~Ie--~l~pd~~g~~e~l~~L~~a--Gld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt 279 (376)
+++ .|. ...|+.. +++.++.|++. |+..+..++|+. +++++.|+ |+++.+++++.++.+++.+|+ +.+.+
T Consensus 235 -~gi~~ir~~~~~p~~i-~~ell~~l~~~~~~~~~v~lglQSgsd~vLk~m~-R~~t~e~~~~~i~~lr~~~pg-i~i~~ 310 (459)
T PRK14338 235 -PGLERLRFLTSHPAWM-TDRLIHAVARLPKCCPHINLPVQAGDDEVLKRMR-RGYTVARYRELIARIREAIPD-VSLTT 310 (459)
T ss_pred -CCcceEEEEecChhhc-CHHHHHHHhcccccccceecCcccCCHHHHHhcc-CCCCHHHHHHHHHHHHHhCCC-CEEEE
Confidence 333 444 3445543 67888988885 477788889965 59999999 899999999999999998764 89999
Q ss_pred eEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCCCCccc----CCh----HHHHHHHHHHHHHhhh
Q 017179 280 SIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEY----ITP----EAFERYRALGMEMGFR 344 (376)
Q Consensus 280 ~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~~v~~~----v~p----e~~~~l~~~a~~~gf~ 344 (376)
++|+|| |||++|+.++++++++++++.++++.|. +|+.....+... +++ ++.+.+++++.++...
T Consensus 311 d~IvG~PgET~ed~~~ti~~l~~l~~~~v~i~~ysp~pGT~~~~~~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~ 385 (459)
T PRK14338 311 DIIVGHPGETEEQFQRTYDLLEEIRFDKVHIAAYSPRPGTLAAEMEDDPALAVPPEEKQRRRRALEQLQEQIATE 385 (459)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHcCCCEeEEEecCCCCCChhhhCcCCccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 9999999999999999999999998886 443111112222 433 3566677777766543
|
|
| >TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125 | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-21 Score=198.21 Aligned_cols=214 Identities=16% Similarity=0.294 Sum_probs=164.8
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCc--ccHHHHHHHHHHHHhh
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD--QGSGHFAQTVRKLKEL 205 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d--~g~~~~~elvr~Ik~~ 205 (376)
+.+|+.+++||+.+|+||+++..++.. ..++++++++++.+.+.|+++|+|++.+-..+.. .+..++.++++.|.+.
T Consensus 135 ~~~~i~~srGC~~~CsfC~~~~~~G~~r~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i~~~ 214 (430)
T TIGR01125 135 HYAYLKVAEGCNRRCAFCIIPSIRGKLRSRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEELGKV 214 (430)
T ss_pred eEEEEEEccCCCCCCCcCCeecccCCceecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHHHhc
Confidence 667899999999999999998765433 4899999999999999999999999876433211 0134688999999765
Q ss_pred CCCcEE--EEecCCCCCChHHHHHHHHcC--cccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017179 206 KPNMLI--EALVPDFRGNNGCVREVAKSG--LNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (376)
Q Consensus 206 ~p~i~I--e~l~pd~~g~~e~l~~L~~aG--ld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~ 280 (376)
...-++ ..+.|+.. +++.++.++++| +..+..++|+. +++++.|+ ++++.+++++.++.+++..|. +.+.++
T Consensus 215 ~~i~~~r~~~~~p~~~-~~ell~~~~~~~~~~~~l~iglES~s~~vLk~m~-k~~~~~~~~~~i~~l~~~~~~-i~i~~~ 291 (430)
T TIGR01125 215 GGIYWIRMHYLYPDEL-TDDVIDLMAEGPKVLPYLDIPLQHASDRILKLMR-RPGSGEQQLDFIERLREKCPD-AVLRTT 291 (430)
T ss_pred CCccEEEEccCCcccC-CHHHHHHHhhCCcccCceEeCCCCCCHHHHhhCC-CCCCHHHHHHHHHHHHHhCCC-CeEeEE
Confidence 211233 33455543 788999999985 66777789965 59999999 899999999999999997664 889999
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCCCCcccCC----hHHHHHHHHHHHHHhhhh
Q 017179 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYIT----PEAFERYRALGMEMGFRY 345 (376)
Q Consensus 281 imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~~v~~~v~----pe~~~~l~~~a~~~gf~~ 345 (376)
+|+|| |||++++.++++++++++++.++++.|. +|+.....+...++ .++..+|.+++.++...+
T Consensus 292 ~I~G~PgET~e~~~~t~~fl~~~~~~~~~~~~~sp~pGT~~~~~~~~i~~~~~~~r~~~l~~~~~~~~~~~ 362 (430)
T TIGR01125 292 FIVGFPGETEEDFQELLDFVEEGQFDRLGAFTYSPEEGTDAFALPDQVPEEVKEERLERLMQLQQRISAKK 362 (430)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCEEeeeeccCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999998886 44322222333344 345667777776665544
|
This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes. |
| >PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.6e-22 Score=201.96 Aligned_cols=214 Identities=16% Similarity=0.270 Sum_probs=166.0
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCC-c--cc------HHHHHHH
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-D--QG------SGHFAQT 198 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~-d--~g------~~~~~el 198 (376)
...|+.+++||+.+|+||+++..++.. +.++++++++++.+.+.|+++|+|+|++-.++. | ++ ...|.++
T Consensus 148 ~~a~i~i~~GC~~~CsFC~ip~~rG~~rsr~~e~V~~Ei~~l~~~g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~l~~L 227 (448)
T PRK14333 148 ITAWVNVIYGCNERCTYCVVPSVRGKEQSRTPEAIRAEIEELAAQGYKEITLLGQNIDAYGRDLPGTTPEGRHQHTLTDL 227 (448)
T ss_pred eeEEEEhhcCCCCCCCCCceecccCCCcccCHHHHHHHHHHHHHCCCcEEEEEecccchhcCCCCCccccccccccHHHH
Confidence 467888999999999999999766543 588999999999999999999999997643321 1 11 1258999
Q ss_pred HHHHHhhCCCcEEEE--ecCCCCCChHHHHHHHHc--Ccccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCC
Q 017179 199 VRKLKELKPNMLIEA--LVPDFRGNNGCVREVAKS--GLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPA 273 (376)
Q Consensus 199 vr~Ik~~~p~i~Ie~--l~pd~~g~~e~l~~L~~a--Gld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~ 273 (376)
++.|.+.....+|.. +.|+.. +++.++.++++ ++..+..++|+. +++++.|+ |+++.++++++++.+++..|.
T Consensus 228 l~~i~~~~~~~rir~~~~~p~~~-~~eli~~~~~~~~~~~~l~igiQSgsd~vLk~m~-R~~t~e~~~~~i~~lr~~~p~ 305 (448)
T PRK14333 228 LYYIHDVEGIERIRFATSHPRYF-TERLIKACAELPKVCEHFHIPFQSGDNEILKAMA-RGYTHEKYRRIIDKIREYMPD 305 (448)
T ss_pred HHHHHhcCCCeEEEECCCChhhh-hHHHHHHHhcCCcccccccCCCccCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCC
Confidence 999877532224543 335433 67888888875 466777789965 59999999 899999999999999998775
Q ss_pred CceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCC----CCcccCChHHHHHHHHHHHHHhhhh
Q 017179 274 GTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHM----PVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 274 Gi~tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~----~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
+.+.+++|+|| |||++++.++++++++++++.++++.|. +|+.... ++...++.++.+.|++++.++...+
T Consensus 306 -i~i~~d~IvGfPgET~edf~~tl~~l~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~ 382 (448)
T PRK14333 306 -ASISADAIVGFPGETEAQFENTLKLVEEIGFDQLNTAAYSPRPGTPAALWDNQLSEEVKSDRLQRLNHLVEQKAAER 382 (448)
T ss_pred -cEEEeeEEEECCCCCHHHHHHHHHHHHHcCCCEEeeeeeecCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999 9999999999999999999999998886 4532221 2333345567888888888766554
|
|
| >TIGR00089 RNA modification enzyme, MiaB family | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.6e-22 Score=200.68 Aligned_cols=213 Identities=19% Similarity=0.326 Sum_probs=167.7
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCC-Ccc-cHHHHHHHHHHHHhh
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDL-ADQ-GSGHFAQTVRKLKEL 205 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl-~d~-g~~~~~elvr~Ik~~ 205 (376)
+.+|+.+++||+.+|+||+++..++.. ..++++++++++.+.+.|+++|+|++.+-..+ .|. +..++.+++++|++.
T Consensus 139 ~~~~i~~srGC~~~CsfC~~~~~~g~~r~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~ 218 (429)
T TIGR00089 139 TRAFLKIQEGCDKFCTYCIVPYARGRERSRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLKGETNLADLLRELSKI 218 (429)
T ss_pred eEEEEEHHhCcCCCCCcCceecccCCCCCCCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCCCCcCHHHHHHHHhcC
Confidence 677888999999999999999766433 48999999999999999999999999863322 111 123588999999774
Q ss_pred CCCcEEEE--ecCCCCCChHHHHHHHHcC--cccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017179 206 KPNMLIEA--LVPDFRGNNGCVREVAKSG--LNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (376)
Q Consensus 206 ~p~i~Ie~--l~pd~~g~~e~l~~L~~aG--ld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~ 280 (376)
....++.. +.|+.. +++.++.++++| ...+..++|+. +++++.|+ |+++.++++++++.+++..|. +.+.++
T Consensus 219 ~g~~~i~~~~~~p~~i-~~ell~~m~~~~~~~~~l~igiES~s~~vLk~m~-R~~~~~~~~~~i~~lr~~~~~-i~i~~~ 295 (429)
T TIGR00089 219 DGIERIRFGSSHPDDV-TDDLIELIAENPKVCKHLHLPVQSGSDRILKRMN-RKYTREEYLDIVEKIRAKIPD-AAITTD 295 (429)
T ss_pred CCCCEEEECCCChhhc-CHHHHHHHHhCCCccCceeeccccCChHHHHhCC-CCCCHHHHHHHHHHHHHHCCC-CEEEee
Confidence 32224444 445432 788999999985 77888889975 59999999 899999999999999997664 889999
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCc-------ccCChHHHHHHHHHHHHHhhhhh
Q 017179 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVS-------EYITPEAFERYRALGMEMGFRYV 346 (376)
Q Consensus 281 imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~-------~~v~pe~~~~l~~~a~~~gf~~~ 346 (376)
+|+|| |||++++.++++++++++++.++++.|. | ..++++. ..+..++...|++++.+++..+.
T Consensus 296 ~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~s-p-~pgT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~ 367 (429)
T TIGR00089 296 IIVGFPGETEEDFEETLDLVEEVKFDKLHSFIYS-P-RPGTPAADMKDQVPEEVKKERLERLIALQKEISLEKN 367 (429)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCEeeccccC-C-CCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999998876 3 2344433 23344567888888888776553
|
This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related. |
| >PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-21 Score=198.55 Aligned_cols=212 Identities=16% Similarity=0.256 Sum_probs=165.4
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCC----cccHHHHHHHHHHHH
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA----DQGSGHFAQTVRKLK 203 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~----d~g~~~~~elvr~Ik 203 (376)
+..|+.+++||+.+|+||+++..++.. ..++++++++++.+.+.|+++|+|++.+-..+. ++...++.++++.|.
T Consensus 147 ~~~~i~isrGCp~~CsFC~~p~~~G~~~sr~~e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~~~~~~~~~~l~~Ll~~l~ 226 (444)
T PRK14325 147 PSAFVSIMEGCDKYCTFCVVPYTRGEEVSRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGPDGEIADFAELLRLVA 226 (444)
T ss_pred ceEEEEhhhCCCCCCCccccCcccCCcccCCHHHHHHHHHHHHHCCCcEEEEEeeccccccCCCCCCCcchHHHHHHHHH
Confidence 567888899999999999998765443 589999999999999999999999998732221 111346889999987
Q ss_pred hhCCC--cEEEEecCCCCCChHHHHHHHHcC--cccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEE
Q 017179 204 ELKPN--MLIEALVPDFRGNNGCVREVAKSG--LNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTK 278 (376)
Q Consensus 204 ~~~p~--i~Ie~l~pd~~g~~e~l~~L~~aG--ld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tk 278 (376)
+..+. +++....|+.. +++.++.++++| +..+..++|+. +++++.|+ |+++.++++++++.+++..| |+.+.
T Consensus 227 ~~~~~~~ir~~~~~p~~~-~~ell~~l~~~~~~~~~l~igiqSgs~~vLk~m~-R~~~~~~~~~~i~~lr~~~~-gi~v~ 303 (444)
T PRK14325 227 AIDGIERIRYTTSHPRDF-TDDLIEAYADLPKLVPFLHLPVQSGSDRILKAMN-RGHTALEYKSIIRKLRAARP-DIAIS 303 (444)
T ss_pred hcCCccEEEEccCCcccC-CHHHHHHHHcCCcccCceeccCCcCCHHHHHhCC-CCCCHHHHHHHHHHHHHHCC-CCEEE
Confidence 64222 33434455433 788899999875 77788889965 59999999 89999999999999999765 48999
Q ss_pred EeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCC-------cccCChHHHHHHHHHHHHHhhhh
Q 017179 279 TSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPV-------SEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 279 t~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v-------~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
+++|+|| |||++++.++++++++++++.++++.|. | ..++++ ...+..++.++|++++.++...+
T Consensus 304 ~~~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~s-p-~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~ 376 (444)
T PRK14325 304 SDFIVGFPGETDEDFEATMKLIEDVGFDQSFSFIYS-P-RPGTPAADLPDDVPEEVKKERLQRLQALINQQQMAF 376 (444)
T ss_pred eeEEEECCCCCHHHHHHHHHHHHhcCCCeeeeeecc-C-CCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 9999999999999999999999988875 4 233333 22233457788888877665544
|
|
| >TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-21 Score=197.06 Aligned_cols=214 Identities=16% Similarity=0.254 Sum_probs=161.8
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCC-CcccHHHHHHHHHHHHhhC
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDL-ADQGSGHFAQTVRKLKELK 206 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl-~d~g~~~~~elvr~Ik~~~ 206 (376)
+.+|+.+++||+++|+||+++..+++. ..++++|+++++.+.+.|+++|+|+|+|-..+ .|.+ .++.++++.|.+..
T Consensus 133 ~~~~i~isrGC~~~CsfC~ip~~~G~~rsr~~e~Vl~Ei~~l~~~G~~ei~l~g~d~~~yg~d~~-~~l~~Ll~~l~~i~ 211 (420)
T TIGR01578 133 LIEIIPINQGCLGNCSYCITKHARGKLASYPPEKIVEKARQLVAEGCKEIWITSQDTGAYGRDIG-SRLPELLRLITEIP 211 (420)
T ss_pred cEEEEEEccCCCCCCCCCccccCCCCcccCCHHHHHHHHHHHHHCCCeEEEEEeeccccccCCCC-cCHHHHHHHHHhCC
Confidence 678899999999999999999776544 48999999999999999999999999875433 2211 24777777776543
Q ss_pred CC--cEEEEecCCCC--CChHHHHHHHHcC-cccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017179 207 PN--MLIEALVPDFR--GNNGCVREVAKSG-LNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (376)
Q Consensus 207 p~--i~Ie~l~pd~~--g~~e~l~~L~~aG-ld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~ 280 (376)
.. +++..+.|... -+++.++.++..+ ...+..++|+. +++++.|+ |+++.+++++.++.+++.+|+ +.+.++
T Consensus 212 ~~~~ir~~~~~p~~~~~~~~~l~~~~~~~~~~~~l~iglQSgsd~iL~~m~-R~~~~~~~~~~i~~i~~~~~~-i~i~~~ 289 (420)
T TIGR01578 212 GEFRLRVGMMNPKNVLEILDELANVYQHEKVYKFLHLPVQSGSDSVLKEMK-REYTVSDFEDIVDKFRERFPD-LTLSTD 289 (420)
T ss_pred CCcEEEEcCCCCCcccccCHHHHHHHhcccccCceEeCCccCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCC-CEEEee
Confidence 22 34444455321 1456666665444 35566788965 59999999 899999999999999997764 999999
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCCCC---cccCChHHHHHHHHHHHHHhhhh
Q 017179 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPV---SEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 281 imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~~v---~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
+|+|| |||++++.++++++++++++.++++.|. .|+.....+ ...+..++.+.|++++.++...+
T Consensus 290 ~IvG~PgET~ed~~~t~~~~~~~~~~~i~~~~~~p~pGT~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~ 359 (420)
T TIGR01578 290 IIVGFPTETDDDFEETMELLRKYRPEKINITKFSPRPGTPAAKMKRIPTNIVKKRSKRLTKLYEQVLLEM 359 (420)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhCCCEEEEEEeeCCCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999998885 343221112 22234457888998888877655
|
This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model. |
| >PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.1e-21 Score=196.21 Aligned_cols=214 Identities=18% Similarity=0.287 Sum_probs=164.5
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCC-c-ccHHHHHHHHHHHHhh
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-D-QGSGHFAQTVRKLKEL 205 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~-d-~g~~~~~elvr~Ik~~ 205 (376)
...|+.++++|+.+|+||.++..+++. ..++++++++++.+.+.|+++|+|+|.+-..+. | .+...+.++++.|.+.
T Consensus 138 ~~~~l~isrGC~~~CsfC~~p~~~g~~~sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~~l~~~ 217 (440)
T PRK14334 138 LSAHLTIMRGCNHHCTYCIVPTTRGPEVSRHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLRLVGAS 217 (440)
T ss_pred eEEEEEeccCCCCCCcCCCcchhcCCCccCCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHHHHHhc
Confidence 778999999999999999999765443 588999999999999999999999996532221 1 0122477888887654
Q ss_pred C-CCcEEEEecCCCCCChHHHHHHHHc--Ccccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE
Q 017179 206 K-PNMLIEALVPDFRGNNGCVREVAKS--GLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI 281 (376)
Q Consensus 206 ~-p~i~Ie~l~pd~~g~~e~l~~L~~a--Gld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~i 281 (376)
. +.+++..+.|+.. +++.++.|+++ |...+..++|+. +++++.|+ |+++.+++++.++.+++..+. +.+.+++
T Consensus 218 ~i~~ir~~~~~p~~i-~~ell~~l~~~~~g~~~l~igvQSgs~~vLk~m~-R~~~~~~~~~~v~~lr~~~~~-i~i~~d~ 294 (440)
T PRK14334 218 GIPRVKFTTSHPMNF-TDDVIAAMAETPAVCEYIHLPVQSGSDRVLRRMA-REYRREKYLERIAEIREALPD-VVLSTDI 294 (440)
T ss_pred CCcEEEEccCCcccC-CHHHHHHHHhcCcCCCeEEeccccCCHHHHHHhC-CCCCHHHHHHHHHHHHHhCCC-cEEEEeE
Confidence 2 2234433445433 78899999985 478888899965 69999999 899999999999999998765 7789999
Q ss_pred EEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCCCCcccCC----hHHHHHHHHHHHHHhhhh
Q 017179 282 MLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYIT----PEAFERYRALGMEMGFRY 345 (376)
Q Consensus 282 mvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~~v~~~v~----pe~~~~l~~~a~~~gf~~ 345 (376)
|+|| |||++|+.++++++++++++.++++.|. +|+.........++ .++.++|.+++.++...+
T Consensus 295 IvG~PgEt~ed~~~tl~~i~~l~~~~i~~f~ysp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~ 364 (440)
T PRK14334 295 IVGFPGETEEDFQETLSLYDEVGYDSAYMFIYSPRPGTPSYKHFQDLPREVKTERLQRLIEKQKEWSYRR 364 (440)
T ss_pred EEECCCCCHHHHHHHHHHHHhcCCCEeeeeEeeCCCCChhHhccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 9999999999999999999999998886 44322111222333 456788888887766655
|
|
| >PRK06267 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-20 Score=187.23 Aligned_cols=219 Identities=16% Similarity=0.169 Sum_probs=158.1
Q ss_pred cChhhhhhhcCCCCcccccCCCCCCccEEEEeeeCCccC--CCCcCCCCCCCCCC------CCCCchhHHHHHHHHHHCC
Q 017179 102 LKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCT--RGCRFCNVKTSRAP------PPPDPDEPTNVAEAIASWG 173 (376)
Q Consensus 102 ~~L~tvce~A~cpn~~ec~~~~~~~~~tat~m~i~d~C~--~~C~FC~v~~~r~~------~~l~~eEi~~~a~al~~~G 173 (376)
.+|..+++.|+..+.. .||+. -....++..++.|+ .+|+||+++..+.. ..+++|||++.++.+.+.|
T Consensus 4 ~~~~~L~~~A~~ir~~-~fG~~---v~l~~~l~~S~~C~l~~~C~FC~~s~~~~~i~~~~~~~~s~eeI~eea~~~~~~G 79 (350)
T PRK06267 4 EEILENSIKAFKLTEK-HHGNI---VSLERALFLGWYCNLKGPCKFCYMSTQKDKIKDPLKARRRVESILAEAILMKRIG 79 (350)
T ss_pred hHHHHHHHHHHHHHHH-HcCCe---EEEEEeeeecCCCcCCCCCcCCCCcccCCccCccccccCCHHHHHHHHHHHHHcC
Confidence 3566777777766654 34432 11122355699999 99999999874321 1379999999999999999
Q ss_pred CcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccch-HHHHHhhcC
Q 017179 174 LDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRD 252 (376)
Q Consensus 174 ~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~ 252 (376)
++.++|+||.. +. ...+.++++.|++.. ...+.+..+-. +.+.+..+..+| +.+++||. +++++.|+
T Consensus 80 v~~~~lsgG~~--~~---~~el~~i~e~I~~~~-~~~~~~s~G~~--d~~~~~~~~l~G---v~g~~ET~~~~~~~~i~- 147 (350)
T PRK06267 80 WKLEFISGGYG--YT---TEEINDIAEMIAYIQ-GCKQYLNVGII--DFLNINLNEIEG---VVGAVETVNPKLHREIC- 147 (350)
T ss_pred CCEEEEecCCC--CC---HHHHHHHHHHHHHhh-CCceEeecccC--CHHHHhhccccC---ceeeeecCCHHHHHhhC-
Confidence 99999999864 22 234555555555432 22222222222 444555555555 45789998 58999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHH
Q 017179 253 HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFE 332 (376)
Q Consensus 253 r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~ 332 (376)
++++++++++.++.+++ .|+.+.+++|+|+||+.+|+.++++++++++++.++|.. +.|. .++++.....+...+
T Consensus 148 ~~~s~ed~~~~l~~ak~---aGi~v~~g~IiGlgEt~ed~~~~l~~l~~l~~d~v~~~~-L~P~-pGTp~~~~~~~s~~e 222 (350)
T PRK06267 148 PGKPLDKIKEMLLKAKD---LGLKTGITIILGLGETEDDIEKLLNLIEELDLDRITFYS-LNPQ-KGTIFENKPSVTTLE 222 (350)
T ss_pred CCCCHHHHHHHHHHHHH---cCCeeeeeEEEeCCCCHHHHHHHHHHHHHcCCCEEEEEe-eeEC-CCCcCCCCCCCCHHH
Confidence 47899999999999999 589999999999999999999999999999999988854 4573 467766655566677
Q ss_pred HHHHHHHHH
Q 017179 333 RYRALGMEM 341 (376)
Q Consensus 333 ~l~~~a~~~ 341 (376)
.++.+|..+
T Consensus 223 ~lr~ia~~R 231 (350)
T PRK06267 223 YMNWVSSVR 231 (350)
T ss_pred HHHHHHHHH
Confidence 777777654
|
|
| >KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.6e-19 Score=166.12 Aligned_cols=214 Identities=17% Similarity=0.294 Sum_probs=160.1
Q ss_pred EEEEee-eCCccCCCCcCCCCCCCC--CC---CCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHH
Q 017179 129 TATIMI-LGDTCTRGCRFCNVKTSR--AP---PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKL 202 (376)
Q Consensus 129 tat~m~-i~d~C~~~C~FC~v~~~r--~~---~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~I 202 (376)
..|.|. -+.+|+.+|+||+++... +- ..+..||+++.|+.+.+.|-..+++-+..||-.. ....|-.+++.|
T Consensus 83 qCTLlsIKtGGCsEDCkYCaQSSRy~TGvKA~klmk~DeVi~~Ak~AK~~GSTRFCmGaAWRD~~G--Rk~~fk~IlE~i 160 (380)
T KOG2900|consen 83 QCTLLSIKTGGCSEDCKYCAQSSRYDTGVKAEKLMKVDEVIKEAKEAKRNGSTRFCMGAAWRDMKG--RKSAFKRILEMI 160 (380)
T ss_pred eeEEEEeecCCcccccchhhhhcccccchhHHHHhhHHHHHHHHHHHHhcCCceeecchhhhhhcc--chhHHHHHHHHH
Confidence 456664 478999999999988532 11 1278999999999999999999998776665332 133455555555
Q ss_pred HhhC-CCcEEEEecCCCCCChHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE
Q 017179 203 KELK-PNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI 281 (376)
Q Consensus 203 k~~~-p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~i 281 (376)
++.. =++.+++-++-. +.+..++|+++|+..|+||++|+.+.|.+|- -.-+|+++|++|..+++ .|+.++++.
T Consensus 161 kevr~MgmEvCvTLGMv--~~qQAkeLKdAGLTAYNHNlDTSREyYskvI-tTRtYDdRL~Ti~nvr~---aGikvCsGG 234 (380)
T KOG2900|consen 161 KEVRDMGMEVCVTLGMV--DQQQAKELKDAGLTAYNHNLDTSREYYSKVI-TTRTYDDRLQTIKNVRE---AGIKVCSGG 234 (380)
T ss_pred HHHHcCCceeeeeeccc--cHHHHHHHHhccceecccCccchhhhhcccc-eecchHHHHHHHHHHHH---hcceecccc
Confidence 5543 246666666655 7889999999999999999999999999987 47799999999999999 689999999
Q ss_pred EEecCCCHHHHHHHHHHHHHcCC--cEEEeecCCCCCCCCCCCcccCC-h-HHHHHHHHHHHHHhhhhhccchhHhhh
Q 017179 282 MLGCGETPDQVVSTMEKVRAAGV--DVMTFGQYMRPSKRHMPVSEYIT-P-EAFERYRALGMEMGFRYVASGPMVRSS 355 (376)
Q Consensus 282 mvGlGET~ee~~e~L~~Lrel~v--d~v~~~qY~~P~~~~~~v~~~v~-p-e~~~~l~~~a~~~gf~~~~sgp~vrss 355 (376)
|+||||.++|++-.+..|..... ..||| +-+-| .+++|+.+.+. + +-.+.++.+|.. +.|+.-.++|-+
T Consensus 235 IlGLGE~e~DriGlihtLatmp~HPESvPi-N~Lva-ikGTP~~d~~~k~l~i~e~lR~IaTA---RIvMPKaiiRla 307 (380)
T KOG2900|consen 235 ILGLGESEDDRIGLIHTLATMPPHPESVPI-NRLVA-IKGTPMADEKSKKLQIDEILRTIATA---RIVMPKAIIRLA 307 (380)
T ss_pred cccccccccceeeeeeeeccCCCCCccccc-ceEEe-cCCcccchhhcccccHHHHHHHHhhh---heechHHHHHHh
Confidence 99999999999999888887764 56777 44556 46888776432 1 234455666554 355555566643
|
|
| >smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.2e-17 Score=148.46 Aligned_cols=176 Identities=16% Similarity=0.289 Sum_probs=140.4
Q ss_pred EEeeeCCccCCCCcCCCCCCCCC-CCCCCchhHHHHHHHHHHCC-----CcEEEEEeeeCCCCCcccHHHHHHHHHHHHh
Q 017179 131 TIMILGDTCTRGCRFCNVKTSRA-PPPPDPDEPTNVAEAIASWG-----LDYVVITSVDRDDLADQGSGHFAQTVRKLKE 204 (376)
Q Consensus 131 t~m~i~d~C~~~C~FC~v~~~r~-~~~l~~eEi~~~a~al~~~G-----~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~ 204 (376)
.++.++++|+.+|.||......+ ...++++++.+.++.+.+.| ++.+.++||+....+ ..++.++++.+++
T Consensus 3 ~~i~~t~~C~~~C~yC~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~~~~~~---~~~~~~~~~~~~~ 79 (216)
T smart00729 3 ALYIITRGCPRRCTFCSFPSARGKLRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLS---PEQLEELLEAIRE 79 (216)
T ss_pred cEEEecCchhccCCcCCcCccccchhHHHHHHHHHHHHHHHhcccCCcceeEEEECCCCCCCCC---HHHHHHHHHHHHH
Confidence 35678999999999999886432 22378899999999886665 477888888755443 2357788888877
Q ss_pred hCC---CcEEEEecCCCCCChHHHHHHHHcCcccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCC-ceEEE
Q 017179 205 LKP---NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAG-TLTKT 279 (376)
Q Consensus 205 ~~p---~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~G-i~tkt 279 (376)
..+ ...+.+.+-....+.+.++.|+++|++.+.+++|+. ++++..++ ++.+++++++.++.+++. | +.+.+
T Consensus 80 ~~~~~~~~~~~~~tn~~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~---g~~~v~~ 155 (216)
T smart00729 80 ILGLADDVEITIETRPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAIN-RGHTVEDVLEAVEKLREA---GPIKVST 155 (216)
T ss_pred hCCCCCCeEEEEEeCcccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhc-CCCCHHHHHHHHHHHHHh---CCcceEE
Confidence 654 344444442122278999999999999999999976 58888888 689999999999999994 6 78999
Q ss_pred eEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 280 SIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 280 ~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
++|+|+ +++++++.+.++++++++++.+.+.+|.
T Consensus 156 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 190 (216)
T smart00729 156 DLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLS 190 (216)
T ss_pred eEEecCCCCCHHHHHHHHHHHHHcCCCeEEeeeee
Confidence 999999 6999999999999999999999987775
|
This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases. |
| >KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-17 Score=165.35 Aligned_cols=207 Identities=19% Similarity=0.297 Sum_probs=160.4
Q ss_pred ccEEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeee----CCCCC-------------
Q 017179 127 TATATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVD----RDDLA------------- 188 (376)
Q Consensus 127 ~~tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~----r~dl~------------- 188 (376)
.++.+|+-+-.||++.|+||+++..|+.. +.+.+.|+++++.+.+.|+++|.|.|++ ||+-.
T Consensus 218 ~s~tAFvSiMRGCdNMCtyCiVpftrGreRsrpi~siv~ev~~L~~qG~KeVTLLGQNVNSyrD~s~~~~~~a~~~~~~~ 297 (552)
T KOG2492|consen 218 SSTTAFVSIMRGCDNMCTYCIVPFTRGRERSRPIESIVEEVKRLAEQGVKEVTLLGQNVNSYRDNSAVQFSSAVPTNLSP 297 (552)
T ss_pred ccchhHHHHHhccccccceEEEeccCCcccCCchHHHHHHHHHHhhcCceeeeeecccccccccchhhhhccCCccccCC
Confidence 34666776678999999999999877654 5888999999999999999999999996 22210
Q ss_pred --------cccHHHHHHHHHHHHhhCCCcEEEEecC---CCCCChHHHHHHHHcC-ccccccc-cc-chHHHHHhhcCCC
Q 017179 189 --------DQGSGHFAQTVRKLKELKPNMLIEALVP---DFRGNNGCVREVAKSG-LNVFAHN-IE-TVEELQSAVRDHR 254 (376)
Q Consensus 189 --------d~g~~~~~elvr~Ik~~~p~i~Ie~l~p---d~~g~~e~l~~L~~aG-ld~i~h~-lE-tv~~l~~~vr~r~ 254 (376)
..|--.|+.+++.+....|+++|..-.| || .+|.|+.+.+-. .+...|. .. ...++++.|+ |+
T Consensus 298 GFst~yK~K~gGl~Fa~LLd~vs~~~PemR~RFTSPHPKDf--pdevl~li~~rdnickqihlPAqSgds~vLE~mr-Rg 374 (552)
T KOG2492|consen 298 GFSTVYKPKQGGLRFAHLLDQVSRADPEMRIRFTSPHPKDF--PDEVLELIRDRDNICKQIHLPAQSGDSRVLEIMR-RG 374 (552)
T ss_pred CceeeecccCCCccHHHHHHHHhhhCcceEEEecCCCCCCC--hHHHHHHHHhCcchhheeeccccCCchHHHHHHH-cc
Confidence 0122369999999999999999998877 56 566666666542 1222332 33 3449999999 99
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCC-CCC----CCCcccCC
Q 017179 255 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPS-KRH----MPVSEYIT 327 (376)
Q Consensus 255 ~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~-~~~----~~v~~~v~ 327 (376)
++.+.+++...+++...|+ +..++++|-|| |||++|..+++-.|++.|.|++-+|.|+ |.. .-| ..|++.|+
T Consensus 375 ysreayl~lv~~Irs~iPg-VglssdfitgfCgeTeedhq~t~sLlrqVgYdv~~lFaysmR~kT~ay~r~~ddvpeeVK 453 (552)
T KOG2492|consen 375 YSREAYLELVAHIRSMIPG-VGLSSDFITGFCGETEEDHQYTVSLLRQVGYDVVFLFAYSMREKTRAYHRLKDDVPEEVK 453 (552)
T ss_pred CChHhhhhHHHHHHhhCCC-CcceeeeEecccCCChHHHHHHHHHHHHhccCeeeeEEeeecccchhhhhhcccccHHHH
Confidence 9999999999999999986 88999999999 9999999999999999999999999994 542 122 23555566
Q ss_pred hHHHHHHHHH
Q 017179 328 PEAFERYRAL 337 (376)
Q Consensus 328 pe~~~~l~~~ 337 (376)
.++..+|..+
T Consensus 454 nrrl~~Li~~ 463 (552)
T KOG2492|consen 454 NRRLFELITF 463 (552)
T ss_pred HHHHHHHHHH
Confidence 6666666544
|
|
| >TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.4e-15 Score=156.63 Aligned_cols=177 Identities=12% Similarity=0.219 Sum_probs=139.4
Q ss_pred EEEeeeCCccCCCCcCCCCCCCCCC-CCCCchhHHHHHHHHH-HCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCC
Q 017179 130 ATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIA-SWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (376)
Q Consensus 130 at~m~i~d~C~~~C~FC~v~~~r~~-~~l~~eEi~~~a~al~-~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p 207 (376)
+..+..+.||+.+|+||.++...+. ...+++.++++++.+. +.|++.+.|+..+ +-....++.+++++|.+..|
T Consensus 194 ~~~i~tSRGCp~~C~FC~~~~~~~~~R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~----f~~~~~~~~~l~~~l~~~~~ 269 (497)
T TIGR02026 194 VAVPNFARGCPFTCNFCSQWKFWRRYRHRDPKKFVDEIEWLVRTHGVGFFILADEE----PTINRKKFQEFCEEIIARNP 269 (497)
T ss_pred eeeeeccCCCCCCCCCCCCCCCCceeecCCHHHHHHHHHHHHHHcCCCEEEEEecc----cccCHHHHHHHHHHHHhcCC
Confidence 3445679999999999998753222 2478899999988875 5799999886432 11125678899999887642
Q ss_pred -CcEEEEec-CC-CCCChHHHHHHHHcCcccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEE
Q 017179 208 -NMLIEALV-PD-FRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIML 283 (376)
Q Consensus 208 -~i~Ie~l~-pd-~~g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imv 283 (376)
.+...+.+ .+ ...+++.++.++++|+..+..++|+. +++++.|+ ++.+.++..+.++.+++ .|+.+..++|+
T Consensus 270 l~i~w~~~~r~~~i~~d~ell~~l~~aG~~~v~iGiES~~~~~L~~~~-K~~t~~~~~~ai~~l~~---~Gi~~~~~~I~ 345 (497)
T TIGR02026 270 ISVTWGINTRVTDIVRDADILHLYRRAGLVHISLGTEAAAQATLDHFR-KGTTTSTNKEAIRLLRQ---HNILSEAQFIT 345 (497)
T ss_pred CCeEEEEecccccccCCHHHHHHHHHhCCcEEEEccccCCHHHHHHhc-CCCCHHHHHHHHHHHHH---CCCcEEEEEEE
Confidence 34433332 12 22267899999999999999999976 59999999 79999999999999999 58999999999
Q ss_pred ec-CCCHHHHHHHHHHHHHcCCcEEEeecCCCC
Q 017179 284 GC-GETPDQVVSTMEKVRAAGVDVMTFGQYMRP 315 (376)
Q Consensus 284 Gl-GET~ee~~e~L~~Lrel~vd~v~~~qY~~P 315 (376)
|+ |||.+++.++++++.+++++.+.+. .+.|
T Consensus 346 G~P~et~e~~~~t~~~~~~l~~~~~~~~-~~tP 377 (497)
T TIGR02026 346 GFENETDETFEETYRQLLDWDPDQANWL-MYTP 377 (497)
T ss_pred ECCCCCHHHHHHHHHHHHHcCCCceEEE-EecC
Confidence 99 9999999999999999999988874 3445
|
This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase. |
| >PRK01254 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.3e-16 Score=161.33 Aligned_cols=185 Identities=14% Similarity=0.169 Sum_probs=140.8
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCC--CCCCchhHHHHHHHHHHC--CCcEEE--EEeeeCCCCC----c---------
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAP--PPPDPDEPTNVAEAIASW--GLDYVV--ITSVDRDDLA----D--------- 189 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~--~~l~~eEi~~~a~al~~~--G~~eIv--LTsg~r~dl~----d--------- 189 (376)
..+++.+..||..+|+||+++..++. .+.++++|+++++.+.+. |+++++ |.|++-..+. |
T Consensus 372 i~~sV~i~RGC~g~CSFCaI~~hqGr~irSRS~esIL~Ea~~L~~~~pGfKgii~DLgGptaN~YG~~c~d~~~~~~C~~ 451 (707)
T PRK01254 372 IRFSVNIMRGCFGGCSFCSITEHEGRIIQSRSEESIINEIEAIRDKVPGFTGVISDLGGPTANMYRLRCKSPRAEQTCRR 451 (707)
T ss_pred eEEEEEEccCCCCCCCccccccccCCeeeeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCcccccccccccccccccccc
Confidence 45678889999999999999987765 368999999999999964 999999 8887622111 1
Q ss_pred -------------ccHHHHHHHHHHHHhhCCCc-EEEEecC---CCC-CChHHHHHHHHcCcc-cccccccc-hHHHHHh
Q 017179 190 -------------QGSGHFAQTVRKLKELKPNM-LIEALVP---DFR-GNNGCVREVAKSGLN-VFAHNIET-VEELQSA 249 (376)
Q Consensus 190 -------------~g~~~~~elvr~Ik~~~p~i-~Ie~l~p---d~~-g~~e~l~~L~~aGld-~i~h~lEt-v~~l~~~ 249 (376)
..-..+.+++++|++. |++ .|.+..+ |+. .+++.++.+.+..+- .+...+|. ++++++.
T Consensus 452 ~~Cl~P~~C~nL~~dh~~l~eLLrkLr~I-pGVKkVrI~SgiR~Dl~l~d~elIeel~~~hV~g~LkVppEH~Sd~VLk~ 530 (707)
T PRK01254 452 LSCVYPDICPHLDTDHEPTINLYRRARDL-KGIKKILIASGVRYDLAVEDPRYVKELVTHHVGGYLKIAPEHTEEGPLSK 530 (707)
T ss_pred ccccCcccccccCCCHHHHHHHHHHHHhC-CCceEEEEEcCCCccccccCHHHHHHHHHhCCccccccccccCCHHHHHH
Confidence 1135799999999864 454 4544443 332 147788989885433 23344784 5699999
Q ss_pred hcCCC--CCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCCCCC
Q 017179 250 VRDHR--ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPS 316 (376)
Q Consensus 250 vr~r~--~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~~P~ 316 (376)
|+ +. ++++++.++++.+++..|.++.+.+.+|+|| |||++|+.+++++|++++++..-+ |-+.|+
T Consensus 531 M~-Kp~~~~~e~F~e~f~rirk~~gk~q~LipyfIvGhPGeTeeDf~eLaefLkel~f~~eQV-Q~FTPt 598 (707)
T PRK01254 531 MM-KPGMGSYDRFKELFDKYSKEAGKEQYLIPYFISAHPGTTDEDMVNLALWLKKNRFRLDQV-QNFYPS 598 (707)
T ss_pred hC-CCCcccHHHHHHHHHHHHHHCCCCeEEEEeEEEECCCCCHHHHHHHHHHHHHhCCCccee-eeeecC
Confidence 98 54 7899999999999998775577889999999 999999999999999999876555 444453
|
|
| >TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-15 Score=157.64 Aligned_cols=171 Identities=12% Similarity=0.211 Sum_probs=136.0
Q ss_pred EeeeCCccCCCCcCCCCCCC-CC-C-CCCCchhHHHHHHHHHHC--CCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhC
Q 017179 132 IMILGDTCTRGCRFCNVKTS-RA-P-PPPDPDEPTNVAEAIASW--GLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK 206 (376)
Q Consensus 132 ~m~i~d~C~~~C~FC~v~~~-r~-~-~~l~~eEi~~~a~al~~~--G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~ 206 (376)
.+..+.||+.+|+||.++.. .+ . ...+++.++++++.+.+. |++++.+... .+. ....++.++++.|++.
T Consensus 199 ~i~tsRGCp~~C~FC~~~~~~~g~~~r~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd---~f~-~~~~~~~~l~~~l~~~- 273 (472)
T TIGR03471 199 SLYTGRGCPSKCTFCLWPQTVGGHRYRTRSAESVIEEVKYALENFPEVREFFFDDD---TFT-DDKPRAEEIARKLGPL- 273 (472)
T ss_pred EEEecCCCCCCCCCCCCCccCCCCceEeCCHHHHHHHHHHHHHhcCCCcEEEEeCC---CCC-CCHHHHHHHHHHHhhc-
Confidence 34568999999999987642 11 1 237899999999888765 7899988532 121 1246778888888764
Q ss_pred CCcEEEEecC-CCCCChHHHHHHHHcCcccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEe
Q 017179 207 PNMLIEALVP-DFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG 284 (376)
Q Consensus 207 p~i~Ie~l~p-d~~g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvG 284 (376)
++...+... ++ +++.++.|+++|+..+..++|+. +++++.|+ ++.+.++..+.++.+++ .|+.+..++|+|
T Consensus 274 -~i~~~~~~~~~~--~~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~-K~~~~~~~~~~i~~~~~---~Gi~v~~~~IiG 346 (472)
T TIGR03471 274 -GVTWSCNARANV--DYETLKVMKENGLRLLLVGYESGDQQILKNIK-KGLTVEIARRFTRDCHK---LGIKVHGTFILG 346 (472)
T ss_pred -CceEEEEecCCC--CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHH---CCCeEEEEEEEe
Confidence 344444332 44 78999999999999999999976 59999998 78999999999999999 589999999999
Q ss_pred c-CCCHHHHHHHHHHHHHcCCcEEEeecCCCC
Q 017179 285 C-GETPDQVVSTMEKVRAAGVDVMTFGQYMRP 315 (376)
Q Consensus 285 l-GET~ee~~e~L~~Lrel~vd~v~~~qY~~P 315 (376)
+ |||.+++.++++++.+++++.+.+.. +.|
T Consensus 347 lPget~e~~~~ti~~~~~l~~~~~~~~~-l~P 377 (472)
T TIGR03471 347 LPGETRETIRKTIDFAKELNPHTIQVSL-AAP 377 (472)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCceeeee-ccc
Confidence 9 99999999999999999999888743 345
|
One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift. |
| >cd01335 Radical_SAM Radical SAM superfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-15 Score=133.68 Aligned_cols=180 Identities=19% Similarity=0.351 Sum_probs=141.5
Q ss_pred eeCCccCCCCcCCCCCCCCCCCC-CCc--hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcE
Q 017179 134 ILGDTCTRGCRFCNVKTSRAPPP-PDP--DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNML 210 (376)
Q Consensus 134 ~i~d~C~~~C~FC~v~~~r~~~~-l~~--eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~ 210 (376)
.++++|+.+|.||.......... ... +++...+......+...+.++||+.-..+ ++.++++.+++..+++.
T Consensus 2 ~~~~~C~~~C~fC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ggep~~~~-----~~~~~i~~~~~~~~~~~ 76 (204)
T cd01335 2 ELTRGCNLNCGFCSNPASKGRGPESPPEIEEILDIVLEAKERGVEVVILTGGEPLLYP-----ELAELLRRLKKELPGFE 76 (204)
T ss_pred ccCCccCCcCCCCCCCCCCCCCccccccHHHHHHHHHHHHhcCceEEEEeCCcCCccH-----hHHHHHHHHHhhCCCce
Confidence 35789999999999987543322 222 46777777788889999999888643222 68899999998767778
Q ss_pred EEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCC
Q 017179 211 IEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GET 288 (376)
Q Consensus 211 Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET 288 (376)
+.+.+....-+++.++.|+++|++.+.+++|+.+ ..+..+.....+++++++.++.+++. |+.+.+++|+|+ +++
T Consensus 77 ~~i~T~~~~~~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~i~g~~~~~ 153 (204)
T cd01335 77 ISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIRGSGESFKERLEALKELREA---GLGLSTTLLVGLGDED 153 (204)
T ss_pred EEEEcCcccCCHHHHHHHHhCCCceEEEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHHc---CCCceEEEEEecCCCh
Confidence 8777654322688999999999999999999875 77777752478999999999999994 688999999999 555
Q ss_pred HHHHHHHHHHHHHcC-CcEEEeecCCCCCCCCCCCc
Q 017179 289 PDQVVSTMEKVRAAG-VDVMTFGQYMRPSKRHMPVS 323 (376)
Q Consensus 289 ~ee~~e~L~~Lrel~-vd~v~~~qY~~P~~~~~~v~ 323 (376)
.+++.++++.+.+.. ++.+.+.+|. | ..++++.
T Consensus 154 ~~~~~~~~~~l~~~~~~~~~~~~~~~-p-~~~t~~~ 187 (204)
T cd01335 154 EEDDLEELELLAEFRSPDRVSLFRLL-P-EEGTPLE 187 (204)
T ss_pred hHHHHHHHHHHHhhcCcchhhhhhhc-c-cCCCeee
Confidence 699999999999998 8989887775 4 2355554
|
Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o |
| >PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-15 Score=131.57 Aligned_cols=157 Identities=18% Similarity=0.331 Sum_probs=122.6
Q ss_pred eeCCccCCCCcCCCCCCC--C-CCCCCCchhHHHHHHHH-HHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhC-CC
Q 017179 134 ILGDTCTRGCRFCNVKTS--R-APPPPDPDEPTNVAEAI-ASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK-PN 208 (376)
Q Consensus 134 ~i~d~C~~~C~FC~v~~~--r-~~~~l~~eEi~~~a~al-~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~-p~ 208 (376)
..+++|+.+|.||..+.. . ....++++++.+.++.+ ...|.+.+.++||+....++ +.+.+..+.+.. +.
T Consensus 2 ~~~~~C~~~C~fC~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~i~~~~gep~~~~~-----~~~~~~~~~~~~~~~ 76 (166)
T PF04055_consen 2 ETTRGCNLNCSFCYYPRSRRKNKPREMSPEEILEEIKELKQDKGVKEIFFGGGEPTLHPD-----FIELLELLRKIKKRG 76 (166)
T ss_dssp EEESEESS--TTTSTTTTCCTCGCEECHHHHHHHHHHHHHHHTTHEEEEEESSTGGGSCH-----HHHHHHHHHHCTCTT
T ss_pred EECcCcCccCCCCCCCccCCCcccccCCHHHHHHHHHHHhHhcCCcEEEEeecCCCcchh-----HHHHHHHHHHhhccc
Confidence 467999999999999974 2 12248999999999999 68898888888776433333 556666665542 56
Q ss_pred cEEEEecCCCCCChHHHHHHHHcCcccccccccchH-H-HHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-
Q 017179 209 MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-E-LQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC- 285 (376)
Q Consensus 209 i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~-l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl- 285 (376)
+.+.+.+....-+.+.++.++++|.+.+..++|+.+ + +.+.++ ++.++++.++.++.+++ .|+.....+|+|+
T Consensus 77 ~~i~~~t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~-~~~~~~~~~~~l~~l~~---~g~~~~~~~i~~~~ 152 (166)
T PF04055_consen 77 IRISINTNGTLLDEELLDELKKLGVDRIRISLESLDEESVLRIIN-RGKSFERVLEALERLKE---AGIPRVIIFIVGLP 152 (166)
T ss_dssp EEEEEEEESTTHCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHS-STSHHHHHHHHHHHHHH---TTSETEEEEEEEBT
T ss_pred cceeeeccccchhHHHHHHHHhcCccEEecccccCCHHHhhhhhc-CCCCHHHHHHHHHHHHH---cCCCcEEEEEEEeC
Confidence 788777765533489999999999999999999875 6 888888 78999999999999999 4676466677777
Q ss_pred CCCHHHHHHHHHHH
Q 017179 286 GETPDQVVSTMEKV 299 (376)
Q Consensus 286 GET~ee~~e~L~~L 299 (376)
|||++|+.+++++|
T Consensus 153 ~~~~~e~~~~~~~i 166 (166)
T PF04055_consen 153 GENDEEIEETIRFI 166 (166)
T ss_dssp TTSHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCcC
Confidence 99999999999875
|
Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A .... |
| >PRK00955 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.2e-15 Score=157.63 Aligned_cols=184 Identities=12% Similarity=0.186 Sum_probs=128.5
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC--CCCchhHHHHHHHHHHC-CCcEEE--EEeeeCCCCC---------------
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP--PPDPDEPTNVAEAIASW-GLDYVV--ITSVDRDDLA--------------- 188 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~--~l~~eEi~~~a~al~~~-G~~eIv--LTsg~r~dl~--------------- 188 (376)
..+++.+++||..+|+||+++..++.. +.++++|+++++.+.+. |+++++ |+|.+-.-+.
T Consensus 292 i~~sI~i~RGC~g~CSFCaIp~~rGr~~rSRs~esIv~Evk~L~~~~gfkg~I~DlgGptan~Yg~~c~~~~~~~~c~~~ 371 (620)
T PRK00955 292 VKFSITSHRGCFGGCSFCAITFHQGRFIQSRSQESILREAKELTEMPDFKGYIHDVGGPTANFRKMACKKQLKCGACKNK 371 (620)
T ss_pred EEEEEEeeCCCCCCCCCCCeecccCCcceecCHHHHHHHHHHHHhccCCeEEEEeCCCCCcccccccccccccccccccc
Confidence 445567899999999999999877654 68999999999999887 888874 2232211100
Q ss_pred -----------cccHHHHHHHHHHHHhhCCCc-EEEEecC---CCC---CChHHHHHHHHcCcc-cccccccc-hHHHHH
Q 017179 189 -----------DQGSGHFAQTVRKLKELKPNM-LIEALVP---DFR---GNNGCVREVAKSGLN-VFAHNIET-VEELQS 248 (376)
Q Consensus 189 -----------d~g~~~~~elvr~Ik~~~p~i-~Ie~l~p---d~~---g~~e~l~~L~~aGld-~i~h~lEt-v~~l~~ 248 (376)
+.....+.+++++|++. |++ ++.+.++ |+. .+.+.++.|.+..+. .+...+|+ ++++++
T Consensus 372 ~clfp~~c~nl~~d~~~l~~LLr~l~~l-~gvkrv~isSGIR~D~l~~~~~~~~l~eL~~~~vsg~L~IapESgSd~VLk 450 (620)
T PRK00955 372 QCLFPKPCKNLDVDHKEYLELLRKVRKL-PGVKKVFIRSGIRYDYLLHDKNDEFFEELCEHHVSGQLKVAPEHISDRVLK 450 (620)
T ss_pred ccccCccccccCcChHHHHHHHHHHhcc-CCceEEEeecceeccccccCCcHHHHHHHHHHhcCCCceeCcCCCChHHHH
Confidence 01134699999999775 443 4333222 221 034577888775433 35556886 569999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHhCCC-Cc--eEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CC
Q 017179 249 AVRDHRANFKQSLDVLMMAKDYVPA-GT--LTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RP 315 (376)
Q Consensus 249 ~vr~r~~t~e~~L~vl~~ak~~~p~-Gi--~tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P 315 (376)
.|+ +. +.+.+.++++.+.+..+. |+ .+.+++|+|| |||++|+.++++++++++++.+.++.|. +|
T Consensus 451 ~M~-K~-~~~~~~~f~~~~~~i~~~~G~~~~I~~yfIvGfPGETeEDf~et~eflkel~~~~~qV~~fTP~P 520 (620)
T PRK00955 451 LMG-KP-SREVYDKFVKKFDRINKKLGKKQYLVPYLMSSHPGSTLEDAIELAEYTKDLGYQPEQVQDFYPTP 520 (620)
T ss_pred HhC-CC-CHHHHHHHHHHHHHhhhhcCCCccEEEEEEEECCCCCHHHHHHHHHHHHHcCCCcceeeeeecCC
Confidence 998 44 656666666555554433 33 4899999999 9999999999999999999999886664 44
|
|
| >PRK08207 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=6e-15 Score=153.20 Aligned_cols=206 Identities=17% Similarity=0.272 Sum_probs=146.3
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCC--CCCCC---CchhHHHHHHHHHH------CCCcEEEEEeeeCCCCCcccHHHHHH
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSR--APPPP---DPDEPTNVAEAIAS------WGLDYVVITSVDRDDLADQGSGHFAQ 197 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r--~~~~l---~~eEi~~~a~al~~------~G~~eIvLTsg~r~dl~d~g~~~~~e 197 (376)
..-|+-+ -.|+.+|.||.++... +...+ -.+.+.+.++.+.+ .++..|.|.||+..-++ .+.+.+
T Consensus 164 ~sLYihI-PFC~~~C~YCsf~s~~~~~~~~~~~~Y~~aL~~EI~~~~~~~~~~~~~v~tIyfGGGTPt~L~---~~~L~~ 239 (488)
T PRK08207 164 VSIYIGI-PFCPTRCLYCSFPSYPIKGYKGLVEPYLEALHYEIEEIGKYLKEKGLKITTIYFGGGTPTSLT---AEELER 239 (488)
T ss_pred eEEEEec-CCCCCcCCCCCCccccCCCCcchHHHHHHHHHHHHHHHHhhhcccCCceeEEEEeCCCccCCC---HHHHHH
Confidence 3445544 4899999999998641 11111 12333333333321 24678888888654443 567888
Q ss_pred HHHHHHhhCCC------cEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHh
Q 017179 198 TVRKLKELKPN------MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDY 270 (376)
Q Consensus 198 lvr~Ik~~~p~------i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~ 270 (376)
+++.|++.+|+ +.+++..|+.. +++.++.|+++|++.+.+++|+.+ ++++.|+ |++++++.++.++.+++
T Consensus 240 Ll~~i~~~f~~~~~~~EiTvE~grPd~i-t~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~ig-R~ht~e~v~~ai~~ar~- 316 (488)
T PRK08207 240 LLEEIYENFPDVKNVKEFTVEAGRPDTI-TEEKLEVLKKYGVDRISINPQTMNDETLKAIG-RHHTVEDIIEKFHLARE- 316 (488)
T ss_pred HHHHHHHhccccCCceEEEEEcCCCCCC-CHHHHHHHHhcCCCeEEEcCCcCCHHHHHHhC-CCCCHHHHHHHHHHHHh-
Confidence 88888876642 34454466654 789999999999999999999865 9999998 89999999999999999
Q ss_pred CCCCc-eEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcc----c--CChHH----HHHHHHHH
Q 017179 271 VPAGT-LTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSE----Y--ITPEA----FERYRALG 338 (376)
Q Consensus 271 ~p~Gi-~tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~----~--v~pe~----~~~l~~~a 338 (376)
.|+ .++.++|+|+ |||.+++.++++++.+++++.+++..+. | .+++++.+ + +..++ ++...+..
T Consensus 317 --~Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~L~pd~isv~~L~-i-~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~l 392 (488)
T PRK08207 317 --MGFDNINMDLIIGLPGEGLEEVKHTLEEIEKLNPESLTVHTLA-I-KRASRLTENKEKYKVADREEIEKMMEEAEEWA 392 (488)
T ss_pred --CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhcCcCEEEEEece-E-cCCChHHHhcCcCCCcCHHHHHHHHHHHHHHH
Confidence 477 7999999999 9999999999999999999999997663 3 23444321 1 22333 33445555
Q ss_pred HHHhhhh
Q 017179 339 MEMGFRY 345 (376)
Q Consensus 339 ~~~gf~~ 345 (376)
.++||..
T Consensus 393 ~~~Gy~~ 399 (488)
T PRK08207 393 KELGYVP 399 (488)
T ss_pred HHcCCHh
Confidence 6667754
|
|
| >PRK08599 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.7e-15 Score=149.09 Aligned_cols=213 Identities=14% Similarity=0.182 Sum_probs=149.4
Q ss_pred EEEeeeCCccCCCCcCCCCCCC--CCC-CCCCchhHHHHHHHHHHC---CCcEEEEEeeeCCCCCcccHHHHHHHHHHHH
Q 017179 130 ATIMILGDTCTRGCRFCNVKTS--RAP-PPPDPDEPTNVAEAIASW---GLDYVVITSVDRDDLADQGSGHFAQTVRKLK 203 (376)
Q Consensus 130 at~m~i~d~C~~~C~FC~v~~~--r~~-~~l~~eEi~~~a~al~~~---G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik 203 (376)
.-|+-+- .|+..|.||.++.. ++. ....++.++++++.+... +++.|.+.||+...++ .+.+.++++.|+
T Consensus 3 ~lYihiP-fC~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~i~~i~~gGGtpt~l~---~~~l~~ll~~i~ 78 (377)
T PRK08599 3 SAYIHIP-FCEHICYYCDFNKVFIKNQPVDEYLDALIKEMNTYAIRPFDKLKTIYIGGGTPTALS---AEQLERLLTAIH 78 (377)
T ss_pred eEEEEeC-CcCCCCCCCCCeeeccCccCHHHHHHHHHHHHHHhhhcCCCceeEEEeCCCCcccCC---HHHHHHHHHHHH
Confidence 3455554 49999999998853 211 112356666776665554 4677777766543233 567889999998
Q ss_pred hhCC---C--cEEEEecCCCCCChHHHHHHHHcCcccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCce-
Q 017179 204 ELKP---N--MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL- 276 (376)
Q Consensus 204 ~~~p---~--i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~- 276 (376)
+.++ . +.++ ..|+.. +.+.++.|+++|++.+.+++|+. +++++.|+ |++++++.++.++.+++ .|+.
T Consensus 79 ~~~~~~~~~eit~e-~~p~~l-~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~-r~~~~~~~~~~i~~l~~---~g~~~ 152 (377)
T PRK08599 79 RNLPLSGLEEFTFE-ANPGDL-TKEKLQVLKDSGVNRISLGVQTFNDELLKKIG-RTHNEEDVYEAIANAKK---AGFDN 152 (377)
T ss_pred HhCCCCCCCEEEEE-eCCCCC-CHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHHHHHHHHHHHHH---cCCCc
Confidence 8653 2 3334 345433 78999999999999999999986 49999999 89999999999999999 4665
Q ss_pred EEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcc------c--CC----hHHHHHHHHHHHHHhh
Q 017179 277 TKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSE------Y--IT----PEAFERYRALGMEMGF 343 (376)
Q Consensus 277 tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~------~--v~----pe~~~~l~~~a~~~gf 343 (376)
++.++|+|+ |||.+++.++++++.+++++.+.+..+. | ..++++.+ . .. .+.++...+...+.||
T Consensus 153 v~~dli~GlPgqt~~~~~~~l~~~~~l~~~~i~~y~l~-~-~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy 230 (377)
T PRK08599 153 ISIDLIYALPGQTIEDFKESLAKALALDIPHYSAYSLI-L-EPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGF 230 (377)
T ss_pred EEEeeecCCCCCCHHHHHHHHHHHHccCCCEEeeecee-e-cCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 789999999 9999999999999999999998886543 3 12333211 1 11 2234444555566688
Q ss_pred hhhccchhHhh
Q 017179 344 RYVASGPMVRS 354 (376)
Q Consensus 344 ~~~~sgp~vrs 354 (376)
......=++|.
T Consensus 231 ~~~~~~~fa~~ 241 (377)
T PRK08599 231 HQYEISNFAKP 241 (377)
T ss_pred cEeeeeeeeCC
Confidence 66544335543
|
|
| >PRK13361 molybdenum cofactor biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-14 Score=142.73 Aligned_cols=186 Identities=20% Similarity=0.280 Sum_probs=138.9
Q ss_pred eeeCCccCCCCcCCCCCCCC---CCCCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCc
Q 017179 133 MILGDTCTRGCRFCNVKTSR---APPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM 209 (376)
Q Consensus 133 m~i~d~C~~~C~FC~v~~~r---~~~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i 209 (376)
+.+++.|+.+|.||...... ....++.+|+.+.++++.+.|++.|.||||+.--.+ .+.++++.+++. +.+
T Consensus 18 i~iT~~CNl~C~yC~~~~~~~~~~~~~ls~eei~~li~~~~~~Gv~~I~~tGGEPllr~-----dl~~li~~i~~~-~~l 91 (329)
T PRK13361 18 LSVTDRCDFRCVYCMSEDPCFLPRDQVLSLEELAWLAQAFTELGVRKIRLTGGEPLVRR-----GCDQLVARLGKL-PGL 91 (329)
T ss_pred EEecCCccccCCCCCCCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECcCCCccc-----cHHHHHHHHHhC-CCC
Confidence 34699999999999854321 122489999999999999999999999999742222 367888888764 333
Q ss_pred -EEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCc-eEEEeEEEecC
Q 017179 210 -LIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGT-LTKTSIMLGCG 286 (376)
Q Consensus 210 -~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi-~tkt~imvGlG 286 (376)
.+.+.+-... ..+.++.|+++|++.+++.+|+.+ +.|.+++ ++.++++.++.++.+++ .|+ .++.++++--|
T Consensus 92 ~~i~itTNG~l-l~~~~~~L~~aGl~~v~ISlDs~~~e~~~~i~-~~g~~~~vl~~i~~~~~---~Gi~~v~in~v~~~g 166 (329)
T PRK13361 92 EELSLTTNGSR-LARFAAELADAGLKRLNISLDTLRPELFAALT-RNGRLERVIAGIDAAKA---AGFERIKLNAVILRG 166 (329)
T ss_pred ceEEEEeChhH-HHHHHHHHHHcCCCeEEEEeccCCHHHhhhhc-CCCCHHHHHHHHHHHHH---cCCCceEEEEEEECC
Confidence 4544443221 246789999999999999999875 9999999 67899999999999998 467 67777766559
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCC--CcccCChHHH
Q 017179 287 ETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMP--VSEYITPEAF 331 (376)
Q Consensus 287 ET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~--v~~~v~pe~~ 331 (376)
++++|+.+.+++++++++++. |..|+ |...... -..+++++++
T Consensus 167 ~N~~ei~~~~~~~~~~gi~~~-~ie~m-P~g~~~~~~~~~~~~~~e~ 211 (329)
T PRK13361 167 QNDDEVLDLVEFCRERGLDIA-FIEEM-PLGEIDERRRARHCSSDEV 211 (329)
T ss_pred CCHHHHHHHHHHHHhcCCeEE-EEecc-cCCCccchhhccCcCHHHH
Confidence 999999999999999999876 43555 6322111 2245566554
|
|
| >PRK05904 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.8e-14 Score=142.79 Aligned_cols=205 Identities=9% Similarity=0.132 Sum_probs=147.8
Q ss_pred CccCCCCcCCCCCCCCCC--C-C---CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCC---
Q 017179 137 DTCTRGCRFCNVKTSRAP--P-P---PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP--- 207 (376)
Q Consensus 137 d~C~~~C~FC~v~~~r~~--~-~---l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p--- 207 (376)
--|...|.||.+.+.-.. . . .-.+|+...++.+....++.|-|-||+..-++ .+.+.++++.|++..+
T Consensus 14 PFC~~kC~yC~f~~~~~~~~~~~~~~~~~~~l~~ei~~~~~~~~~tiy~GGGTPs~L~---~~~l~~ll~~i~~~~~~~~ 90 (353)
T PRK05904 14 PFCQYICTFCDFKRILKTPQTKKIFKDFLKNIKMHIKNFKIKQFKTIYLGGGTPNCLN---DQLLDILLSTIKPYVDNNC 90 (353)
T ss_pred CCccCcCCCCCCeeccCCcccHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCccccCC---HHHHHHHHHHHHHhcCCCC
Confidence 469999999999863111 1 1 12344444444332344677777777654444 4678888888887653
Q ss_pred CcEEEEecCCCCCChHHHHHHHHcCcccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCce-EEEeEEEec
Q 017179 208 NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLGC 285 (376)
Q Consensus 208 ~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~-tkt~imvGl 285 (376)
.+.+++ .|+.. +++.++.|+++|+..+..++|+. +++++.|+ |+++.++.++.++.+++ .|+. +..++|+|+
T Consensus 91 eitiE~-nP~~l-t~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~-R~~~~~~~~~ai~~lr~---~G~~~v~~dlI~Gl 164 (353)
T PRK05904 91 EFTIEC-NPELI-TQSQINLLKKNKVNRISLGVQSMNNNILKQLN-RTHTIQDSKEAINLLHK---NGIYNISCDFLYCL 164 (353)
T ss_pred eEEEEe-ccCcC-CHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHHHHHHHHHHHHH---cCCCcEEEEEeecC
Confidence 245553 45433 78999999999999999999976 59999999 89999999999999999 4665 999999999
Q ss_pred -CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCCCCcc---cC----ChHHHHHHHHHHHHHhhhhhccchhHh
Q 017179 286 -GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSE---YI----TPEAFERYRALGMEMGFRYVASGPMVR 353 (376)
Q Consensus 286 -GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~~v~~---~v----~pe~~~~l~~~a~~~gf~~~~sgp~vr 353 (376)
|||.+++.++++++.+++++.+.+..+. .|+ +++.+ .+ ..+.++...++..+.||....-.-+.|
T Consensus 165 Pgqt~e~~~~tl~~~~~l~p~~is~y~L~~~~g---T~l~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yeisnfa~ 238 (353)
T PRK05904 165 PILKLKDLDEVFNFILKHKINHISFYSLEIKEG---SILKKYHYTIDEDKEAEQLNYIKAKFNKLNYKRYEVSNWTN 238 (353)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEEeeEecCC---ChHhhcCCCCChHHHHHHHHHHHHHHHHcCCcEEechhhcC
Confidence 9999999999999999999999887764 453 22221 12 234566777788888887643223444
|
|
| >TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.9e-14 Score=138.82 Aligned_cols=169 Identities=19% Similarity=0.266 Sum_probs=133.1
Q ss_pred eeCCccCCCCcCCCCCC-CC----CCCCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCC
Q 017179 134 ILGDTCTRGCRFCNVKT-SR----APPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN 208 (376)
Q Consensus 134 ~i~d~C~~~C~FC~v~~-~r----~~~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~ 208 (376)
.+++.|+.+|.||.... .. ....++.+|+.+.++.+.+.|++.|.||||+.--.++ +.++|+.+++. ++
T Consensus 15 ~vT~~CNl~C~yC~~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gv~~V~ltGGEPll~~~-----l~~li~~i~~~-~g 88 (334)
T TIGR02666 15 SVTDRCNLRCVYCMPEGGGLDFLPKEELLTFEEIERLVRAFVGLGVRKVRLTGGEPLLRKD-----LVELVARLAAL-PG 88 (334)
T ss_pred EecCccCcCCCCCCCCcCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECccccccCC-----HHHHHHHHHhc-CC
Confidence 46999999999998764 21 1234899999999999999999999999997432222 67788887663 34
Q ss_pred c-EEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCce-EEEeEEEec
Q 017179 209 M-LIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLGC 285 (376)
Q Consensus 209 i-~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~-tkt~imvGl 285 (376)
+ .+.+.+-... ..+.++.|+++|++.+++++|+.+ +.|++++.++.++++.++.|+.+++ .|+. ++.++++.-
T Consensus 89 i~~v~itTNG~l-l~~~~~~L~~~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~---~G~~~v~in~vv~~ 164 (334)
T TIGR02666 89 IEDIALTTNGLL-LARHAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALA---AGLEPVKLNTVVMR 164 (334)
T ss_pred CCeEEEEeCchh-HHHHHHHHHHcCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHH---cCCCcEEEEEEEeC
Confidence 5 5665553221 356789999999999999999875 8899998446799999999999999 4676 888887777
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 286 GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 286 GET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
|++++|+.+.+++++++++++ .+..|+
T Consensus 165 g~n~~ei~~l~~~~~~~gv~~-~~ie~m 191 (334)
T TIGR02666 165 GVNDDEIVDLAEFAKERGVTL-RFIELM 191 (334)
T ss_pred CCCHHHHHHHHHHHHhcCCeE-EEEecc
Confidence 999999999999999999974 343454
|
The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. |
| >TIGR01212 radical SAM protein, TIGR01212 family | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.4e-14 Score=139.25 Aligned_cols=174 Identities=13% Similarity=0.161 Sum_probs=123.3
Q ss_pred CCCCcCCCCCCCCCCC---CCCchhHHHHH----HHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCC-cEE
Q 017179 140 TRGCRFCNVKTSRAPP---PPDPDEPTNVA----EAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN-MLI 211 (376)
Q Consensus 140 ~~~C~FC~v~~~r~~~---~l~~eEi~~~a----~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~-i~I 211 (376)
..+|.||.......-. ..+.++|.+.. +...+.+.--+.|+||+...++ .+.+.++++.+++ .|. +.+
T Consensus 37 ~~gC~FC~~~~~~~~~~~~~~~~~~i~~qi~~~~~~~~~~~~~~iyf~ggt~t~l~---~~~L~~l~~~i~~-~~~~~~i 112 (302)
T TIGR01212 37 RGGCTFCNDASRPIFADEYTQARIPIKEQIKKQMKKYKKDKKFIAYFQAYTNTYAP---VEVLKEMYEQALS-YDDVVGL 112 (302)
T ss_pred CCCcccCCCCCCccccccccccCCCHHHHHHHHHHHhhccCEEEEEEECCCcCCCC---HHHHHHHHHHHhC-CCCEEEE
Confidence 4689999876543111 12333443333 3333333333778888765554 6788899999887 443 233
Q ss_pred EE-ecCCCCCChHH---HHHHHHcCcc-cccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec
Q 017179 212 EA-LVPDFRGNNGC---VREVAKSGLN-VFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 285 (376)
Q Consensus 212 e~-l~pd~~g~~e~---l~~L~~aGld-~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl 285 (376)
.+ .-|+.. +++. ++.++++|.+ .+..++|+.+ ++++.|+ |+++++++++.++.+++ .|+.+.+++|+|+
T Consensus 113 si~trpd~l-~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~-Rg~t~~~~~~ai~~l~~---~gi~v~~~lI~Gl 187 (302)
T TIGR01212 113 SVGTRPDCV-PDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKIN-RGHDFACYVDAVKRARK---RGIKVCSHVILGL 187 (302)
T ss_pred EEEecCCcC-CHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHc-CcChHHHHHHHHHHHHH---cCCEEEEeEEECC
Confidence 33 245543 4544 4455567884 5889999865 9999999 89999999999999999 5799999999999
Q ss_pred -CCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcc
Q 017179 286 -GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSE 324 (376)
Q Consensus 286 -GET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~ 324 (376)
|||.+++.++++++.+++++.+.+.++ .| .+++++.+
T Consensus 188 Pget~e~~~~t~~~l~~l~~d~i~i~~l-~~-~pgT~L~~ 225 (302)
T TIGR01212 188 PGEDREEMMETAKIVSLLDVDGIKIHPL-HV-VKGTKMAK 225 (302)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEEEE-Ee-cCCCHHHH
Confidence 999999999999999999999998655 34 34555544
|
This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain. |
| >PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.9e-14 Score=139.11 Aligned_cols=170 Identities=16% Similarity=0.216 Sum_probs=132.2
Q ss_pred eeeCCccCCCCcCCCCCCC----CCCCCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCC
Q 017179 133 MILGDTCTRGCRFCNVKTS----RAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN 208 (376)
Q Consensus 133 m~i~d~C~~~C~FC~v~~~----r~~~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~ 208 (376)
+.++++|+.+|.||..... .....++++|+.+.++.+.+.|++.|.||||+.--.+ .+.++++.+++..+.
T Consensus 21 i~vT~~Cnl~C~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~-----~l~~li~~i~~~~~~ 95 (331)
T PRK00164 21 ISVTDRCNFRCTYCMPEGYLPFLPKEELLSLEEIERLVRAFVALGVRKVRLTGGEPLLRK-----DLEDIIAALAALPGI 95 (331)
T ss_pred EEEcCCcCcCCCCCCCccCCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCCcCcc-----CHHHHHHHHHhcCCC
Confidence 4579999999999987642 1122489999999999999999999999999732222 267888888765333
Q ss_pred cEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCc-eEEEeEEEecC
Q 017179 209 MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGT-LTKTSIMLGCG 286 (376)
Q Consensus 209 i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi-~tkt~imvGlG 286 (376)
..|.+.+-... ..+.++.|+++|++.+++++++.+ +.|..++ ++.++++.++.|+.+++. |+ .++.++++--|
T Consensus 96 ~~i~itTNG~l-l~~~~~~L~~agl~~i~ISlds~~~e~~~~i~-~~~~~~~vl~~i~~~~~~---g~~~v~i~~vv~~g 170 (331)
T PRK00164 96 RDLALTTNGYL-LARRAAALKDAGLDRVNVSLDSLDPERFKAIT-GRDRLDQVLAGIDAALAA---GLTPVKVNAVLMKG 170 (331)
T ss_pred ceEEEEcCchh-HHHHHHHHHHcCCCEEEEEeccCCHHHhccCC-CCCCHHHHHHHHHHHHHC---CCCcEEEEEEEECC
Confidence 45555543221 246788999999999999999865 8899998 678999999999999994 56 67877766559
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 287 ETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 287 ET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
++++|+.+.+++++++++++- +..|+
T Consensus 171 ~n~~ei~~l~~~~~~~gv~v~-~ie~~ 196 (331)
T PRK00164 171 VNDDEIPDLLEWAKDRGIQLR-FIELM 196 (331)
T ss_pred CCHHHHHHHHHHHHhCCCeEE-EEEee
Confidence 999999999999999998743 33565
|
|
| >PRK05660 HemN family oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.8e-14 Score=142.20 Aligned_cols=206 Identities=11% Similarity=0.199 Sum_probs=145.6
Q ss_pred CccCCCCcCCCCCCCCCCCCCCchh-HHHHHHHHH-------HCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCC-
Q 017179 137 DTCTRGCRFCNVKTSRAPPPPDPDE-PTNVAEAIA-------SWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP- 207 (376)
Q Consensus 137 d~C~~~C~FC~v~~~r~~~~l~~eE-i~~~a~al~-------~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p- 207 (376)
--|+..|.||.+.+.......+.++ +....+++. ..+++.|.|.||+..-++ .+.+.++++.|++.+|
T Consensus 14 PFC~~~C~yC~f~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~v~ti~~GGGtPs~l~---~~~l~~ll~~l~~~~~~ 90 (378)
T PRK05660 14 PWCVQKCPYCDFNSHALKGEVPEDEYVDHLLADLDADLPLVQGREVHSIFIGGGTPSLFS---AEAIQRLLDGVRARLPF 90 (378)
T ss_pred CCccCcCCCCCCeecCCCCcCCHHHHHHHHHHHHHHHhHhccCCceeEEEeCCCccccCC---HHHHHHHHHHHHHhCCC
Confidence 4699999999987642112233333 222333332 256899999999865554 4678888999988653
Q ss_pred ----CcEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCce-EEEeE
Q 017179 208 ----NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TKTSI 281 (376)
Q Consensus 208 ----~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~-tkt~i 281 (376)
.+.+++-..++ +.+.++.|+++|++.+..++|+.+ ++++.|+ |.+++++.++.++.+++ .|+. +..++
T Consensus 91 ~~~~eit~e~np~~l--~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~-r~~~~~~~~~ai~~~~~---~G~~~v~~dl 164 (378)
T PRK05660 91 APDAEITMEANPGTV--EADRFVGYQRAGVNRISIGVQSFSEEKLKRLG-RIHGPDEAKRAAKLAQG---LGLRSFNLDL 164 (378)
T ss_pred CCCcEEEEEeCcCcC--CHHHHHHHHHcCCCEEEeccCcCCHHHHHHhC-CCCCHHHHHHHHHHHHH---cCCCeEEEEe
Confidence 23444422234 789999999999999999999875 9999999 89999999999999999 4674 69999
Q ss_pred EEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCCCCcc----cCChH----HHHHHHHHHHHHhhhhhccchh
Q 017179 282 MLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSE----YITPE----AFERYRALGMEMGFRYVASGPM 351 (376)
Q Consensus 282 mvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~~v~~----~v~pe----~~~~l~~~a~~~gf~~~~sgp~ 351 (376)
|+|+ |+|.+++.++++.+.+++++.+.+.++. .| ++++.+ .+..+ .++...+.-.+.||....-.=+
T Consensus 165 i~Glpgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~---gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yei~~f 241 (378)
T PRK05660 165 MHGLPDQSLEEALDDLRQAIALNPPHLSWYQLTIEP---NTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQQYETSAY 241 (378)
T ss_pred ecCCCCCCHHHHHHHHHHHHhcCCCeEEeeccEecc---CCcccccCCCCcCHHHHHHHHHHHHHHHHHcCCcEeecccc
Confidence 9999 9999999999999999999999987664 34 222222 22222 2333444555667765433324
Q ss_pred Hhh
Q 017179 352 VRS 354 (376)
Q Consensus 352 vrs 354 (376)
.|-
T Consensus 242 a~~ 244 (378)
T PRK05660 242 AKP 244 (378)
T ss_pred cCC
Confidence 443
|
|
| >PRK05799 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.2e-14 Score=141.99 Aligned_cols=208 Identities=13% Similarity=0.179 Sum_probs=141.7
Q ss_pred CccCCCCcCCCCCCCCCCCCCC---chhHHHHHHHHH-HCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhh--CCCcE
Q 017179 137 DTCTRGCRFCNVKTSRAPPPPD---PDEPTNVAEAIA-SWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL--KPNML 210 (376)
Q Consensus 137 d~C~~~C~FC~v~~~r~~~~l~---~eEi~~~a~al~-~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~--~p~i~ 210 (376)
--|+..|.||.++...+..... ++.++++++.+. ..+++.|.|.||+..-++ .+.+..+++.|++. .+++.
T Consensus 11 PfC~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~i~~gGGtps~l~---~~~l~~L~~~i~~~~~~~~~e 87 (374)
T PRK05799 11 PFCKQKCLYCDFPSYSGKEDLMMEYIKALSKEIRNSTKNKKIKSIFIGGGTPTYLS---LEALEILKETIKKLNKKEDLE 87 (374)
T ss_pred CCccCCCCCCCCCcccCCcchHHHHHHHHHHHHHhhcCCCceeEEEECCCcccCCC---HHHHHHHHHHHHhCCCCCCCE
Confidence 4699999999998653222222 344444443322 234678888887654343 34555666776542 13344
Q ss_pred EEE-ecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCce-EEEeEEEec-C
Q 017179 211 IEA-LVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLGC-G 286 (376)
Q Consensus 211 Ie~-l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~-tkt~imvGl-G 286 (376)
+.+ ..|+.. +++.++.|+++|++.+.+++|+.+ ++++.++ |.+++++.++.++.+++ .|+. +..++|+|+ |
T Consensus 88 itie~~p~~~-t~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~-R~~~~~~~~~ai~~l~~---~g~~~v~~dli~GlPg 162 (374)
T PRK05799 88 FTVEGNPGTF-TEEKLKILKSMGVNRLSIGLQAWQNSLLKYLG-RIHTFEEFLENYKLARK---LGFNNINVDLMFGLPN 162 (374)
T ss_pred EEEEeCCCcC-CHHHHHHHHHcCCCEEEEECccCCHHHHHHcC-CCCCHHHHHHHHHHHHH---cCCCcEEEEeecCCCC
Confidence 433 335433 789999999999999999999765 9999998 89999999999999999 4674 899999999 9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCccc--------CChHH----HHHHHHHHHHHhhhhhccchhHhh
Q 017179 287 ETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEY--------ITPEA----FERYRALGMEMGFRYVASGPMVRS 354 (376)
Q Consensus 287 ET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~--------v~pe~----~~~l~~~a~~~gf~~~~sgp~vrs 354 (376)
||.+++.++++++.+++++.+.+..+. | ..++++.+. +..+. ++...+.-.+.||....-.=++|.
T Consensus 163 qt~e~~~~~l~~~~~l~~~~is~y~l~-~-~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~~ye~~~fa~~ 240 (374)
T PRK05799 163 QTLEDWKETLEKVVELNPEHISCYSLI-I-EEGTPFYNLYENGKLKLPDEEEEREMYHYTIEFLKEKGYHQYEISNFAKP 240 (374)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeccE-e-cCCCHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCcEEeeeeeECC
Confidence 999999999999999999999887653 3 223443221 12222 333344555667766543334443
|
|
| >PRK05628 coproporphyrinogen III oxidase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.7e-14 Score=141.82 Aligned_cols=206 Identities=15% Similarity=0.225 Sum_probs=144.2
Q ss_pred ccCCCCcCCCCCCCC-CCC--CCC----chhHHHHHHHHHH-C-----CCcEEEEEeeeCCCCCcccHHHHHHHHHHHHh
Q 017179 138 TCTRGCRFCNVKTSR-APP--PPD----PDEPTNVAEAIAS-W-----GLDYVVITSVDRDDLADQGSGHFAQTVRKLKE 204 (376)
Q Consensus 138 ~C~~~C~FC~v~~~r-~~~--~l~----~eEi~~~a~al~~-~-----G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~ 204 (376)
-|+..|.||.+.... ... ..+ .+.+.++++...+ . .++.|.+.||+.--++ ...+.++++.|++
T Consensus 11 FC~~~C~yC~f~~~~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGGTPs~l~---~~~l~~ll~~i~~ 87 (375)
T PRK05628 11 FCATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGGGTPSLLG---AEGLARVLDAVRD 87 (375)
T ss_pred CcCCcCCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHhhccCCCceeEEEeCCCccccCC---HHHHHHHHHHHHH
Confidence 699999999997532 110 112 3455555554432 2 2577777777644343 4668888888877
Q ss_pred hC---CCcEEEE-ecCCCCCChHHHHHHHHcCcccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCce-EE
Q 017179 205 LK---PNMLIEA-LVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TK 278 (376)
Q Consensus 205 ~~---p~i~Ie~-l~pd~~g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~-tk 278 (376)
.+ +++.+.+ ..|+.. +++.++.|+++|++.+..++|+. +++++.|+ |+++.++.++.++.+++ .|+. +.
T Consensus 88 ~~~~~~~~e~t~e~~p~~i-~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~-R~~s~~~~~~a~~~l~~---~g~~~v~ 162 (375)
T PRK05628 88 TFGLAPGAEVTTEANPEST-SPEFFAALRAAGFTRVSLGMQSAAPHVLAVLD-RTHTPGRAVAAAREARA---AGFEHVN 162 (375)
T ss_pred hCCCCCCCEEEEEeCCCCC-CHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHHHHHHHHHHHHH---cCCCcEE
Confidence 54 3333332 245433 78999999999999999999976 49999999 89999999999999999 4677 99
Q ss_pred EeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCccc--------CC----hHHHHHHHHHHHHHhhhh
Q 017179 279 TSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEY--------IT----PEAFERYRALGMEMGFRY 345 (376)
Q Consensus 279 t~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~--------v~----pe~~~~l~~~a~~~gf~~ 345 (376)
.++|+|+ |||.+++.++++.+.+++++.+.+..+. + ..++++.+. +. .+.+....+...+.||..
T Consensus 163 ~dli~GlPgqt~~~~~~tl~~~~~l~~~~i~~y~l~-~-~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G~~~ 240 (375)
T PRK05628 163 LDLIYGTPGESDDDWRASLDAALEAGVDHVSAYALI-V-EDGTALARRVRRGELPAPDDDVLADRYELADARLSAAGFDW 240 (375)
T ss_pred EEEeccCCCCCHHHHHHHHHHHHhcCCCEEEeeeee-c-CCCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHcCCCe
Confidence 9999999 9999999999999999999999887764 2 123333221 11 123444555556678866
Q ss_pred hccchhHh
Q 017179 346 VASGPMVR 353 (376)
Q Consensus 346 ~~sgp~vr 353 (376)
....-++|
T Consensus 241 ye~s~fa~ 248 (375)
T PRK05628 241 YEVSNWAR 248 (375)
T ss_pred eeeccccC
Confidence 54433554
|
|
| >PLN02951 Molybderin biosynthesis protein CNX2 | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-13 Score=138.23 Aligned_cols=171 Identities=17% Similarity=0.276 Sum_probs=131.0
Q ss_pred eeeCCccCCCCcCCCCCCCC--CC--CCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCC
Q 017179 133 MILGDTCTRGCRFCNVKTSR--AP--PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN 208 (376)
Q Consensus 133 m~i~d~C~~~C~FC~v~~~r--~~--~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~ 208 (376)
+.+++.|+.+|.||...... .+ ..++.+|+.+.++.+.+.|++.|.||||+.- +. ..+.++++.+++. ++
T Consensus 62 isvT~~CNlrC~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~~Gv~~I~~tGGEPl-lr----~dl~eli~~l~~~-~g 135 (373)
T PLN02951 62 ISLTERCNLRCQYCMPEEGVELTPKSHLLSQDEIVRLAGLFVAAGVDKIRLTGGEPT-LR----KDIEDICLQLSSL-KG 135 (373)
T ss_pred EEEcCCcCcCCCCCCCCcCCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCCc-ch----hhHHHHHHHHHhc-CC
Confidence 35789999999999765321 11 2389999999999999999999999999732 21 2377888888765 34
Q ss_pred c-EEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCc-eEEEeEEEec
Q 017179 209 M-LIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGT-LTKTSIMLGC 285 (376)
Q Consensus 209 i-~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi-~tkt~imvGl 285 (376)
+ .+.+.+-.+. ..+.+..|+++|++.+++++++.+ +.|+.++ ++..+++.++.|+.+++. |+ .++.++++--
T Consensus 136 i~~i~itTNG~l-L~~~~~~L~~aGld~VnISLDsl~~e~~~~it-r~~~~~~vl~~I~~a~~~---G~~~vkin~vv~~ 210 (373)
T PLN02951 136 LKTLAMTTNGIT-LSRKLPRLKEAGLTSLNISLDTLVPAKFEFLT-RRKGHDRVLESIDTAIEL---GYNPVKVNCVVMR 210 (373)
T ss_pred CceEEEeeCcch-HHHHHHHHHhCCCCeEEEeeccCCHHHHHHHh-cCCCHHHHHHHHHHHHHc---CCCcEEEEEEecC
Confidence 4 3444443221 246689999999999999999874 8899998 567899999999999984 55 5777777666
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEeecCCCC
Q 017179 286 GETPDQVVSTMEKVRAAGVDVMTFGQYMRP 315 (376)
Q Consensus 286 GET~ee~~e~L~~Lrel~vd~v~~~qY~~P 315 (376)
|++++|+.+.++++++.++++- +..|+..
T Consensus 211 g~N~~Ei~~li~~a~~~gi~vr-~ie~mP~ 239 (373)
T PLN02951 211 GFNDDEICDFVELTRDKPINVR-FIEFMPF 239 (373)
T ss_pred CCCHHHHHHHHHHHHhCCCeEE-EEEcccC
Confidence 9999999999999999997643 4366644
|
|
| >PRK08446 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.7e-14 Score=139.71 Aligned_cols=206 Identities=10% Similarity=0.132 Sum_probs=145.4
Q ss_pred CccCCCCcCCCCCCCCCCCCC---CchhHHHHHHHHHH----CCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhC-CC
Q 017179 137 DTCTRGCRFCNVKTSRAPPPP---DPDEPTNVAEAIAS----WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK-PN 208 (376)
Q Consensus 137 d~C~~~C~FC~v~~~r~~~~l---~~eEi~~~a~al~~----~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~-p~ 208 (376)
--|+..|.||.+........+ ..+.+.++++...+ .+++.|.|.||+..-++ .+++.++++.|++.. ++
T Consensus 8 PFC~~~C~yC~f~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGGTPs~l~---~~~l~~ll~~i~~~~~~~ 84 (350)
T PRK08446 8 PFCESKCGYCAFNSYENKHDLKKEYMQALCLDLKFELEQFTDEKIESVFIGGGTPSTVS---AKFYEPIFEIISPYLSKD 84 (350)
T ss_pred CCccCcCCCCCCcCcCCCcccHHHHHHHHHHHHHHHHhhccCCceeEEEECCCccccCC---HHHHHHHHHHHHHhcCCC
Confidence 469999999998764211112 23444444443222 36789999888755454 466777777777643 23
Q ss_pred --cEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCce-EEEeEEEe
Q 017179 209 --MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLG 284 (376)
Q Consensus 209 --i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~-tkt~imvG 284 (376)
+.+++ .|+.. +++.++.|+++|++.+..++|+.+ ++++.++ |.++.++.++.++.+++ .|+. +..++|+|
T Consensus 85 ~eitiE~-nP~~~-~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lg-R~~~~~~~~~ai~~lr~---~g~~~v~iDli~G 158 (350)
T PRK08446 85 CEITTEA-NPNSA-TKAWLKGMKNLGVNRISFGVQSFNEDKLKFLG-RIHSQKQIIKAIENAKK---AGFENISIDLIYD 158 (350)
T ss_pred ceEEEEe-CCCCC-CHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHHHHHHHHHHHHH---cCCCEEEEEeecC
Confidence 44453 45432 789999999999999999999864 9999998 89999999999999999 4674 88999999
Q ss_pred c-CCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCccc----CCh-HHHHHHHHHHHHHhhhhhccchhHh
Q 017179 285 C-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEY----ITP-EAFERYRALGMEMGFRYVASGPMVR 353 (376)
Q Consensus 285 l-GET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~----v~p-e~~~~l~~~a~~~gf~~~~sgp~vr 353 (376)
+ |||.+++.++++++.+++++.+.+..+. | ..++++.+. +.. +-+....+...+.||....-.=+.|
T Consensus 159 lPgqt~~~~~~~l~~~~~l~~~~is~y~L~-~-~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy~~yeis~fa~ 231 (350)
T PRK08446 159 TPLDNKKLLKEELKLAKELPINHLSAYSLT-I-EENTPFFEKNHKKKDDENLAKFFIEQLEELGFKQYEISNFGK 231 (350)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEeccce-e-cCCChhHHhhhcCCCHHHHHHHHHHHHHHCCCcEEEeehhhC
Confidence 9 9999999999999999999999986653 3 123443221 122 2344455666677886553323555
|
|
| >TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-13 Score=142.14 Aligned_cols=174 Identities=17% Similarity=0.286 Sum_probs=133.5
Q ss_pred EEEeeeCCccCCCCcCCCCCCCCCC-CCC---CchhHHHHHHHHHH-----CCCcEEEEEeeeCCCCCcccHHHHHHHHH
Q 017179 130 ATIMILGDTCTRGCRFCNVKTSRAP-PPP---DPDEPTNVAEAIAS-----WGLDYVVITSVDRDDLADQGSGHFAQTVR 200 (376)
Q Consensus 130 at~m~i~d~C~~~C~FC~v~~~r~~-~~l---~~eEi~~~a~al~~-----~G~~eIvLTsg~r~dl~d~g~~~~~elvr 200 (376)
.-|+-+ .-|+..|.||.+....+. ... ..+.++++++.+.. .+++.|.|.||+...++ .+++.++++
T Consensus 51 ~lYiHi-PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~I~fgGGtP~~l~---~~~l~~ll~ 126 (455)
T TIGR00538 51 SLYVHI-PFCHKACYFCGCNVIITRQKHKADPYLDALEKEIALVAPLFDGNRHVSQLHWGGGTPTYLS---PEQISRLMK 126 (455)
T ss_pred EEEEEe-CCccCcCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCcCCCC---HHHHHHHHH
Confidence 344433 579999999999864321 122 23444444444432 37889999998754443 567888999
Q ss_pred HHHhhCC---C--cEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCC
Q 017179 201 KLKELKP---N--MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAG 274 (376)
Q Consensus 201 ~Ik~~~p---~--i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~G 274 (376)
.|++.++ + +.+++ .|+.. +++.++.|+++|++.+..++|+.+ ++++.|+ |.++.++.++.++.+++ .|
T Consensus 127 ~i~~~~~~~~~~eitie~-np~~l-~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~-r~~~~~~~~~ai~~l~~---~G 200 (455)
T TIGR00538 127 LIRENFPFNADAEISIEI-DPRYI-TKDVIDALRDEGFNRLSFGVQDFNKEVQQAVN-RIQPEEMIFELMNHARE---AG 200 (455)
T ss_pred HHHHhCCCCCCCeEEEEe-ccCcC-CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhC-CCCCHHHHHHHHHHHHh---cC
Confidence 9987653 2 34443 34332 789999999999999999999875 9999999 78999999999999999 46
Q ss_pred ce-EEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 275 TL-TKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 275 i~-tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
+. +..++|+|+ |+|.+++.++++++.+++++.+.+..+.
T Consensus 201 ~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~~~~is~y~L~ 241 (455)
T TIGR00538 201 FTSINIDLIYGLPKQTKESFAKTLEKVAELNPDRLAVFNYA 241 (455)
T ss_pred CCcEEEeEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEecCc
Confidence 74 799999999 9999999999999999999999987763
|
This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein. |
| >PRK09249 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-13 Score=141.20 Aligned_cols=175 Identities=17% Similarity=0.231 Sum_probs=133.6
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CC---CchhHHHHHHHHH-----HCCCcEEEEEeeeCCCCCcccHHHHHHHH
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PP---DPDEPTNVAEAIA-----SWGLDYVVITSVDRDDLADQGSGHFAQTV 199 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l---~~eEi~~~a~al~-----~~G~~eIvLTsg~r~dl~d~g~~~~~elv 199 (376)
..-|+-+ --|+..|.||.+....... .. ..+.+.++++.++ ..+++.|.|.||+..-++ ...+.+++
T Consensus 50 ~~LYvHI-PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gGGtPs~l~---~~~l~~ll 125 (453)
T PRK09249 50 LSLYVHI-PFCRSLCYYCGCNKIITRDHEKADPYLDALEKEIALVAALLGPGRPVSQLHWGGGTPTFLS---PEQLRRLM 125 (453)
T ss_pred eEEEEEe-CCccccCCCCCCcccCCCCcchHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCcccccCC---HHHHHHHH
Confidence 3444444 5799999999987642211 12 1233444444332 235789999998754443 46788889
Q ss_pred HHHHhhCC---C--cEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCC
Q 017179 200 RKLKELKP---N--MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPA 273 (376)
Q Consensus 200 r~Ik~~~p---~--i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~ 273 (376)
+.|++.++ + +.+++ .|+.. +++.++.|+++|++.+..++|+.+ ++++.++ |.+++++.++.++.+++ .
T Consensus 126 ~~l~~~~~~~~~~e~tie~-np~~l-t~e~l~~l~~aG~~risiGvqS~~~~~L~~l~-r~~~~~~~~~ai~~l~~---~ 199 (453)
T PRK09249 126 ALLREHFNFAPDAEISIEI-DPREL-DLEMLDALRELGFNRLSLGVQDFDPEVQKAVN-RIQPFEFTFALVEAARE---L 199 (453)
T ss_pred HHHHHhCCCCCCCEEEEEe-cCCcC-CHHHHHHHHHcCCCEEEECCCCCCHHHHHHhC-CCCCHHHHHHHHHHHHH---c
Confidence 88887653 2 34443 45433 789999999999999999999765 9999999 89999999999999999 4
Q ss_pred Cc-eEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 274 GT-LTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 274 Gi-~tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
|+ .+..++|+|+ |||.+++.++++++.+++++.+.+..+.
T Consensus 200 G~~~v~~dli~GlPgqt~e~~~~~l~~~~~l~~~~i~~y~l~ 241 (453)
T PRK09249 200 GFTSINIDLIYGLPKQTPESFARTLEKVLELRPDRLAVFNYA 241 (453)
T ss_pred CCCcEEEEEEccCCCCCHHHHHHHHHHHHhcCCCEEEEccCc
Confidence 67 7899999999 9999999999999999999999997765
|
|
| >TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-13 Score=137.35 Aligned_cols=168 Identities=11% Similarity=0.215 Sum_probs=125.8
Q ss_pred CccCCCCcCCCCCCCCCCC-CC--CchhHHHHHHH-HHHCC---CcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhC---
Q 017179 137 DTCTRGCRFCNVKTSRAPP-PP--DPDEPTNVAEA-IASWG---LDYVVITSVDRDDLADQGSGHFAQTVRKLKELK--- 206 (376)
Q Consensus 137 d~C~~~C~FC~v~~~r~~~-~l--~~eEi~~~a~a-l~~~G---~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~--- 206 (376)
--|+..|.||.+....... .. -.+.+.++++. +...| ++.|.+.||+..-++ .+.+.++++.|++..
T Consensus 8 PFC~~~C~yC~f~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~v~~i~~GGGtPs~l~---~~~l~~ll~~i~~~~~~~ 84 (360)
T TIGR00539 8 PFCENKCGYCDFNSYENKSGPKEEYTQALCQDLKHALSQTDQEPLESIFIGGGTPNTLS---VEAFERLFESIYQHASLS 84 (360)
T ss_pred CCCcCcCCCCCCcccCcCccCHHHHHHHHHHHHHHHHHhcCCCcccEEEeCCCchhcCC---HHHHHHHHHHHHHhCCCC
Confidence 3699999999988642111 11 01222222222 23344 789999998754443 456777777776544
Q ss_pred CC--cEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCc-eEEEeEE
Q 017179 207 PN--MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGT-LTKTSIM 282 (376)
Q Consensus 207 p~--i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi-~tkt~im 282 (376)
++ +.+++ -|+.. +.+.++.|+++|++.+..++|+.+ ++++.|+ |.+++++.++.++.+++ .|+ .+..++|
T Consensus 85 ~~~eitie~-np~~l-t~e~l~~l~~~Gv~risiGvqS~~~~~l~~lg-R~~~~~~~~~ai~~l~~---~G~~~v~~dli 158 (360)
T TIGR00539 85 DDCEITTEA-NPELI-TAEWCKGLKGAGINRLSLGVQSFRDDKLLFLG-RQHSAKNIAPAIETALK---SGIENISLDLM 158 (360)
T ss_pred CCCEEEEEe-CCCCC-CHHHHHHHHHcCCCEEEEecccCChHHHHHhC-CCCCHHHHHHHHHHHHH---cCCCeEEEecc
Confidence 23 34443 45443 789999999999999999999875 9999997 89999999999999999 477 4899999
Q ss_pred Eec-CCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 283 LGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 283 vGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
+|+ |||.+++.++++.+.+++++.+.+..+.
T Consensus 159 ~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~ 190 (360)
T TIGR00539 159 YGLPLQTLNSLKEELKLAKELPINHLSAYALS 190 (360)
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCEEEeecce
Confidence 999 9999999999999999999999986653
|
Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo. |
| >PRK08208 coproporphyrinogen III oxidase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-13 Score=140.06 Aligned_cols=213 Identities=14% Similarity=0.182 Sum_probs=148.3
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CC---CchhHHHHHHHHHHC----CCcEEEEEeeeCCCCCcccHHHHHHHHH
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PP---DPDEPTNVAEAIASW----GLDYVVITSVDRDDLADQGSGHFAQTVR 200 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l---~~eEi~~~a~al~~~----G~~eIvLTsg~r~dl~d~g~~~~~elvr 200 (376)
..-|+-+ --|+..|.||.+....+.. .. ..+.++++++.+.+. .+..|.|-||+.--++ .+++.++++
T Consensus 40 ~~lYvHI-PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~i~~i~~GGGTPs~l~---~~~l~~Ll~ 115 (430)
T PRK08208 40 LSLYIHI-PFCEMRCGFCNLFTRTGADAEFIDSYLDALIRQAEQVAEALAPARFASFAVGGGTPTLLN---AAELEKLFD 115 (430)
T ss_pred eEEEEEe-CCccCcCCCCCCccccCCccchHHHHHHHHHHHHHHHHHHcCCCceeEEEEcCCccccCC---HHHHHHHHH
Confidence 5566655 5799999999987642111 11 234455555544422 2567777666533233 567888888
Q ss_pred HHHhhCC----C--cEEEEecCCCCCChHHHHHHHHcCcccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCC
Q 017179 201 KLKELKP----N--MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPA 273 (376)
Q Consensus 201 ~Ik~~~p----~--i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~ 273 (376)
.|++.++ . +.+++ .|+.. +++.++.|+++|++.+..++|+. +++++.|+ |+++.++.++.++.+++ .
T Consensus 116 ~i~~~~~~~~~~~eitiE~-~P~~l-t~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~-R~~~~~~~~~ai~~l~~---~ 189 (430)
T PRK08208 116 SVERVLGVDLGNIPKSVET-SPATT-TAEKLALLAARGVNRLSIGVQSFHDSELHALH-RPQKRADVHQALEWIRA---A 189 (430)
T ss_pred HHHHhCCCCCCCceEEEEe-CcCcC-CHHHHHHHHHcCCCEEEEecccCCHHHHHHhC-CCCCHHHHHHHHHHHHH---c
Confidence 8876653 1 33343 35433 78999999999999999999987 59999998 89999999999999999 4
Q ss_pred Cce-EEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCCh--HH----HHHHHHHHHHHhhhh
Q 017179 274 GTL-TKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITP--EA----FERYRALGMEMGFRY 345 (376)
Q Consensus 274 Gi~-tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~p--e~----~~~l~~~a~~~gf~~ 345 (376)
|+. +..++|+|+ |+|.+++.++++.+.+++++.+.+..+. + ..++++.+...+ +. ++...+.-.+.||..
T Consensus 190 g~~~i~~dlI~GlP~qt~e~~~~~l~~~~~l~~~~is~y~L~-~-~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy~~ 267 (430)
T PRK08208 190 GFPILNIDLIYGIPGQTHASWMESLDQALVYRPEELFLYPLY-V-RPLTGLGRRARAWDDQRLSLYRLARDLLLEAGYTQ 267 (430)
T ss_pred CCCeEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEEcccc-c-cCCCccchhcCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 675 689999999 9999999999999999999999997653 3 234555443332 22 333344455668766
Q ss_pred hccchhHh
Q 017179 346 VASGPMVR 353 (376)
Q Consensus 346 ~~sgp~vr 353 (376)
...+=++|
T Consensus 268 yei~~far 275 (430)
T PRK08208 268 TSMRMFRR 275 (430)
T ss_pred Eeecceec
Confidence 54444444
|
|
| >TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-13 Score=132.92 Aligned_cols=169 Identities=16% Similarity=0.301 Sum_probs=132.3
Q ss_pred EeeeCCccCCCCcCCCCCCCCCC--CCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCc
Q 017179 132 IMILGDTCTRGCRFCNVKTSRAP--PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM 209 (376)
Q Consensus 132 ~m~i~d~C~~~C~FC~v~~~r~~--~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i 209 (376)
.+.+++.|+.+|.||........ ..++.+|+.+.++.+...|++.|.||||+.--.++ +.++++.+++. ++
T Consensus 13 ~i~vT~~CNl~C~yC~~~~~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~-----l~~iv~~l~~~--g~ 85 (302)
T TIGR02668 13 RISVTDRCNLSCFYCHMEGEDRSGGNELSPEEIERIVRVASEFGVRKVKITGGEPLLRKD-----LIEIIRRIKDY--GI 85 (302)
T ss_pred EEEEcccccCCCCCCCccccCCCccCcCCHHHHHHHHHHHHHcCCCEEEEECcccccccC-----HHHHHHHHHhC--CC
Confidence 45679999999999987643222 24899999999999999999999999997322222 67788888764 23
Q ss_pred -EEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCce-EEEeEEEecC
Q 017179 210 -LIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLGCG 286 (376)
Q Consensus 210 -~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~-tkt~imvGlG 286 (376)
.+.+.+-... ..+.+..|+++|++.+++++|+.+ +.|+.++ ++.++++.++.++.+++ .|+. ++..+++--|
T Consensus 86 ~~v~i~TNG~l-l~~~~~~l~~~g~~~v~iSld~~~~~~~~~i~-~~~~~~~vl~~i~~~~~---~G~~~v~i~~v~~~g 160 (302)
T TIGR02668 86 KDVSMTTNGIL-LEKLAKKLKEAGLDRVNVSLDTLDPEKYKKIT-GRGALDRVIEGIESAVD---AGLTPVKLNMVVLKG 160 (302)
T ss_pred ceEEEEcCchH-HHHHHHHHHHCCCCEEEEEecCCCHHHhhhcc-CCCcHHHHHHHHHHHHH---cCCCcEEEEEEEeCC
Confidence 5555553221 356788899999999999999875 8999998 57899999999999999 4664 7777776558
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 287 ETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 287 ET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
++++++.+.+++++++++++ .+..|+
T Consensus 161 ~n~~ei~~~~~~~~~~g~~~-~~ie~~ 186 (302)
T TIGR02668 161 INDNEIPDMVEFAAEGGAIL-QLIELM 186 (302)
T ss_pred CCHHHHHHHHHHHHhcCCEE-EEEEEe
Confidence 99999999999999999974 444555
|
This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666). |
| >PRK13347 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.3e-13 Score=139.11 Aligned_cols=175 Identities=15% Similarity=0.218 Sum_probs=133.1
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCC-CCCCC---chhHHHHHHHHHH-----CCCcEEEEEeeeCCCCCcccHHHHHHHH
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRA-PPPPD---PDEPTNVAEAIAS-----WGLDYVVITSVDRDDLADQGSGHFAQTV 199 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~-~~~l~---~eEi~~~a~al~~-----~G~~eIvLTsg~r~dl~d~g~~~~~elv 199 (376)
..-|+-+ .-|+..|.||.+..... ..... .+.++++++.... .++..|.|.||+..-++ ..++.+++
T Consensus 51 ~~LYvHI-PfC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGGTPs~l~---~~~l~~ll 126 (453)
T PRK13347 51 VSLYLHV-PFCRSLCWFCGCNTIITQRDAPVEAYVAALIREIRLVAASLPQRRRVSQLHWGGGTPTILN---PDQFERLM 126 (453)
T ss_pred eEEEEEe-CCccccCCCCCCcCcCccccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCcccccCC---HHHHHHHH
Confidence 3445544 45999999999875321 11111 2333333333222 35789999998755444 46789999
Q ss_pred HHHHhhCC---C--cEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCC
Q 017179 200 RKLKELKP---N--MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPA 273 (376)
Q Consensus 200 r~Ik~~~p---~--i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~ 273 (376)
+.|++.++ + +.++ ..|+.. +++.++.|+++|++.+..++|+.+ ++++.++ |.++.++.++.++.+++ .
T Consensus 127 ~~i~~~~~~~~~~e~tie-~~p~~l-t~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~-R~~~~~~~~~ai~~lr~---~ 200 (453)
T PRK13347 127 AALRDAFDFAPEAEIAVE-IDPRTV-TAEMLQALAALGFNRASFGVQDFDPQVQKAIN-RIQPEEMVARAVELLRA---A 200 (453)
T ss_pred HHHHHhCCCCCCceEEEE-eccccC-CHHHHHHHHHcCCCEEEECCCCCCHHHHHHhC-CCCCHHHHHHHHHHHHh---c
Confidence 99988653 2 3444 345433 789999999999999999999765 9999999 88999999999999999 4
Q ss_pred Cce-EEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 274 GTL-TKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 274 Gi~-tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
|+. +..++|+|+ |+|.+++.++++.+.+++++.+.+..|.
T Consensus 201 G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~p~~i~~y~l~ 242 (453)
T PRK13347 201 GFESINFDLIYGLPHQTVESFRETLDKVIALSPDRIAVFGYA 242 (453)
T ss_pred CCCcEEEeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 675 899999999 9999999999999999999999998774
|
|
| >PRK09058 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-13 Score=141.48 Aligned_cols=175 Identities=16% Similarity=0.260 Sum_probs=133.6
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCCC---CCchhHHHHHHHHHH------CCCcEEEEEeeeCCCCCcccHHHHHHHH
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPPP---PDPDEPTNVAEAIAS------WGLDYVVITSVDRDDLADQGSGHFAQTV 199 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~~---l~~eEi~~~a~al~~------~G~~eIvLTsg~r~dl~d~g~~~~~elv 199 (376)
..-|+-+ --|...|.||.+.+...... .-.+.++++++...+ ..++.|.|-||+...++ .+.+.+++
T Consensus 62 ~~lYiHI-PFC~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~GGGTPs~L~---~~~l~~ll 137 (449)
T PRK09058 62 RLLYIHI-PFCRTHCTFCGFFQNAWNPEAVARYTDALIRELAMEADSPLTQSAPIHAVYFGGGTPTALS---AEDLARLI 137 (449)
T ss_pred eEEEEEe-CCcCCcCCCCCCcCcCCchhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEECCCccccCC---HHHHHHHH
Confidence 4555544 46999999999875311111 233455555555443 23567777676655454 56788888
Q ss_pred HHHHhhCC-----CcEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCC
Q 017179 200 RKLKELKP-----NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPA 273 (376)
Q Consensus 200 r~Ik~~~p-----~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~ 273 (376)
+.|++.+| .+.+++-...+ +.+.++.++++|++.+..++|+.+ ++++.|+ |.++.++.++.++.+++.
T Consensus 138 ~~i~~~~~l~~~~eitiE~~p~~~--t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lg-R~~~~~~~~~~i~~l~~~--- 211 (449)
T PRK09058 138 TALREYLPLAPDCEITLEGRINGF--DDEKADAALDAGANRFSIGVQSFNTQVRRRAG-RKDDREEVLARLEELVAR--- 211 (449)
T ss_pred HHHHHhCCCCCCCEEEEEeCcCcC--CHHHHHHHHHcCCCEEEecCCcCCHHHHHHhC-CCCCHHHHHHHHHHHHhC---
Confidence 88888764 24455433344 789999999999999999999764 9999999 899999999999999994
Q ss_pred C-ceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 274 G-TLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 274 G-i~tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
| ..+..++|+|+ |||.+++.++++++.+++++.|.+.++.
T Consensus 212 g~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~~~~is~y~L~ 253 (449)
T PRK09058 212 DRAAVVCDLIFGLPGQTPEIWQQDLAIVRDLGLDGVDLYALN 253 (449)
T ss_pred CCCcEEEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 5 57999999999 9999999999999999999999987763
|
|
| >PRK07379 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.8e-13 Score=136.65 Aligned_cols=168 Identities=14% Similarity=0.165 Sum_probs=127.3
Q ss_pred CccCCCCcCCCCCCCC-CCC--CCCc-------hhHHHHHHHHHH--CCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHh
Q 017179 137 DTCTRGCRFCNVKTSR-APP--PPDP-------DEPTNVAEAIAS--WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKE 204 (376)
Q Consensus 137 d~C~~~C~FC~v~~~r-~~~--~l~~-------eEi~~~a~al~~--~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~ 204 (376)
--|...|.||.++... +.. ..+. +.+.++++.... .+++.|.|-||+..-++ .+++.++++.|++
T Consensus 18 PFC~~~C~YC~f~~~~~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~i~~iy~GGGTps~l~---~~~l~~ll~~i~~ 94 (400)
T PRK07379 18 PFCRRRCFYCDFPISVVGDRTRGGTSGLIEEYVEVLCQEIAITPSFGQPLQTVFFGGGTPSLLS---VEQLERILTTLDQ 94 (400)
T ss_pred ccccCcCCCCCCccccccccccccccchHHHHHHHHHHHHHHhhccCCceeEEEECCCccccCC---HHHHHHHHHHHHH
Confidence 4799999999997531 110 1111 223333332222 24678888777654443 5778889988887
Q ss_pred hCC-----CcEEEEecCCCCCChHHHHHHHHcCcccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCce-E
Q 017179 205 LKP-----NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-T 277 (376)
Q Consensus 205 ~~p-----~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~-t 277 (376)
.++ .+.+++ .|+-. +.+.++.|+++|++.+..++|+. +++++.|+ |+++.++.++.++.+++ .|+. +
T Consensus 95 ~~~~~~~~eit~E~-~P~~l-t~e~l~~l~~~GvnrislGvQS~~d~~L~~l~-R~~~~~~~~~ai~~l~~---~G~~~v 168 (400)
T PRK07379 95 RFGIAPDAEISLEI-DPGTF-DLEQLQGYRSLGVNRVSLGVQAFQDELLALCG-RSHRVKDIFAAVDLIHQ---AGIENF 168 (400)
T ss_pred hCCCCCCCEEEEEe-CCCcC-CHHHHHHHHHCCCCEEEEEcccCCHHHHHHhC-CCCCHHHHHHHHHHHHH---cCCCeE
Confidence 653 244443 44332 78999999999999999999976 49999999 89999999999999999 4776 8
Q ss_pred EEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 278 KTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 278 kt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
+.++|+|+ |||.+++.++++.+.+++++.|.+..+.
T Consensus 169 ~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~ 205 (400)
T PRK07379 169 SLDLISGLPHQTLEDWQASLEAAIALNPTHLSCYDLV 205 (400)
T ss_pred EEEeecCCCCCCHHHHHHHHHHHHcCCCCEEEEecce
Confidence 99999999 9999999999999999999999987553
|
|
| >PRK08898 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.1e-13 Score=133.61 Aligned_cols=168 Identities=16% Similarity=0.195 Sum_probs=129.7
Q ss_pred CccCCCCcCCCCCCCCCC-C-CC----CchhHHHHHHHHHH----CCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhC
Q 017179 137 DTCTRGCRFCNVKTSRAP-P-PP----DPDEPTNVAEAIAS----WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK 206 (376)
Q Consensus 137 d~C~~~C~FC~v~~~r~~-~-~l----~~eEi~~~a~al~~----~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~ 206 (376)
--|...|.||.+...... . .. =.+.+.+.++.... ..++-|.|-||+..-++ .+.+.++++.|++.+
T Consensus 27 PFC~~~C~yC~f~~~~~~~~~~~~~~~Y~~~l~~ei~~~~~~~~~~~i~siy~GGGTPs~L~---~~~L~~ll~~i~~~~ 103 (394)
T PRK08898 27 PWCVRKCPYCDFNSHEWKDGGAIPEAAYLDALRADLEQALPLVWGRQVHTVFIGGGTPSLLS---AAGLDRLLSDVRALL 103 (394)
T ss_pred CCccCcCCCCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhccCCceeEEEECCCCcCCCC---HHHHHHHHHHHHHhC
Confidence 469999999999864211 1 11 12344444443322 23678888888766555 567889999998877
Q ss_pred CC-----cEEEEecCCCCCChHHHHHHHHcCcccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017179 207 PN-----MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (376)
Q Consensus 207 p~-----i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~ 280 (376)
|. +.+++ .|+.. +.+.++.|+++|++.+..++|+. +++++.|+ |.++.++..++++.+++. +..+..+
T Consensus 104 ~~~~~~eit~E~-~p~~~-~~e~L~~l~~~GvnrisiGvQS~~~~~L~~l~-R~~~~~~~~~~i~~~~~~---~~~v~~d 177 (394)
T PRK08898 104 PLDPDAEITLEA-NPGTF-EAEKFAQFRASGVNRLSIGIQSFNDAHLKALG-RIHDGAEARAAIEIAAKH---FDNFNLD 177 (394)
T ss_pred CCCCCCeEEEEE-CCCCC-CHHHHHHHHHcCCCeEEEecccCCHHHHHHhC-CCCCHHHHHHHHHHHHHh---CCceEEE
Confidence 42 44454 34432 68999999999999999999976 59999998 899999999999999984 3468999
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 281 imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
+|+|+ |+|.+++.++++.+.+++++.|.+..+.
T Consensus 178 lI~GlPgqt~~~~~~~l~~~~~l~p~~is~y~l~ 211 (394)
T PRK08898 178 LMYALPGQTLDEALADVETALAFGPPHLSLYHLT 211 (394)
T ss_pred EEcCCCCCCHHHHHHHHHHHHhcCCCEEEEeeeE
Confidence 99999 9999999999999999999999987764
|
|
| >PRK09057 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.5e-13 Score=133.59 Aligned_cols=173 Identities=12% Similarity=0.148 Sum_probs=133.0
Q ss_pred EEeeeCCccCCCCcCCCCCCCCCCCC---CCchhHHHHHHHHHH----CCCcEEEEEeeeCCCCCcccHHHHHHHHHHHH
Q 017179 131 TIMILGDTCTRGCRFCNVKTSRAPPP---PDPDEPTNVAEAIAS----WGLDYVVITSVDRDDLADQGSGHFAQTVRKLK 203 (376)
Q Consensus 131 t~m~i~d~C~~~C~FC~v~~~r~~~~---l~~eEi~~~a~al~~----~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik 203 (376)
-|+-+ --|...|.||.+.+...... .-.+.+.++++...+ ..++.|.|.||+..-++ .+.+.++++.|+
T Consensus 7 lYiHI-PFC~~kC~yC~f~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l~---~~~L~~ll~~i~ 82 (380)
T PRK09057 7 LYVHW-PFCLAKCPYCDFNSHVRHAIDQARFAAAFLRELATEAARTGPRTLTSIFFGGGTPSLMQ---PETVAALLDAIA 82 (380)
T ss_pred EEEEe-CCcCCcCCCCCCcccCcCcCCHHHHHHHHHHHHHHHHHHcCCCCcCeEEeCCCccccCC---HHHHHHHHHHHH
Confidence 34433 46999999999986421111 112334444443332 34788988888765554 567888999998
Q ss_pred hhCC-----CcEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceE
Q 017179 204 ELKP-----NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLT 277 (376)
Q Consensus 204 ~~~p-----~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~t 277 (376)
+.+| .+.+++-..++ +.+.++.|+++|++.+..++|+.+ ++++.|+ |+++.++..+.++.+++. +..+
T Consensus 83 ~~f~~~~~~eit~E~~P~~i--~~e~L~~l~~~GvnrislGvQS~~d~vL~~l~-R~~~~~~~~~ai~~~~~~---~~~v 156 (380)
T PRK09057 83 RLWPVADDIEITLEANPTSV--EAGRFRGYRAAGVNRVSLGVQALNDADLRFLG-RLHSVAEALAAIDLAREI---FPRV 156 (380)
T ss_pred HhCCCCCCccEEEEECcCcC--CHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHHHHHHHHHHHHHh---CccE
Confidence 8653 24555533344 789999999999999999999765 9999999 899999999999999994 4679
Q ss_pred EEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 278 KTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 278 kt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
..++|+|+ |+|.+++.++++.+.+++++.|.+.++.
T Consensus 157 ~~dli~GlPgqt~~~~~~~l~~~~~l~p~~is~y~L~ 193 (380)
T PRK09057 157 SFDLIYARPGQTLAAWRAELKEALSLAADHLSLYQLT 193 (380)
T ss_pred EEEeecCCCCCCHHHHHHHHHHHHhcCCCeEEeecce
Confidence 99999999 9999999999999999999999987664
|
|
| >COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.8e-13 Score=129.54 Aligned_cols=174 Identities=17% Similarity=0.258 Sum_probs=134.3
Q ss_pred EEEEe--eeCCccCCCCcCCCCCC-C-CCCC--CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHH
Q 017179 129 TATIM--ILGDTCTRGCRFCNVKT-S-RAPP--PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKL 202 (376)
Q Consensus 129 tat~m--~i~d~C~~~C~FC~v~~-~-r~~~--~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~I 202 (376)
..+++ .++|.|+.+|.||...- . -.|. .+++||+.+.++...+.|++.|.||||+.- +. ..+.++|+.|
T Consensus 9 ~~~~LRiSvTdrCNfrC~YCm~eg~~~~~~~~~~Ls~eei~~~~~~~~~~Gv~kvRlTGGEPl-lR----~dl~eIi~~l 83 (322)
T COG2896 9 PVRYLRISVTDRCNFRCTYCMPEGPLAFLPKEELLSLEEIRRLVRAFAELGVEKVRLTGGEPL-LR----KDLDEIIARL 83 (322)
T ss_pred EeceEEEEEecCcCCcccccCCCCCcccCcccccCCHHHHHHHHHHHHHcCcceEEEeCCCch-hh----cCHHHHHHHH
Confidence 55665 36899999999999876 2 1232 489999999999999999999999999731 21 1266788888
Q ss_pred HhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCc-eEEEe
Q 017179 203 KELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGT-LTKTS 280 (376)
Q Consensus 203 k~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi-~tkt~ 280 (376)
++. .--.|.+-+-.+. -....+.|++||++.++..+++.+ +.|.+|. +...+++.++-|+.|.+ .|+ ++|-+
T Consensus 84 ~~~-~~~~islTTNG~~-L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT-~~~~~~~Vl~GI~~A~~---~Gl~pVKlN 157 (322)
T COG2896 84 ARL-GIRDLSLTTNGVL-LARRAADLKEAGLDRVNVSLDSLDPEKFRKIT-GRDRLDRVLEGIDAAVE---AGLTPVKLN 157 (322)
T ss_pred hhc-ccceEEEecchhh-HHHHHHHHHHcCCcEEEeecccCCHHHHHHHh-CCCcHHHHHHHHHHHHH---cCCCceEEE
Confidence 764 1112332221111 356789999999999999999886 9999999 56669999999999999 578 49999
Q ss_pred EEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCC
Q 017179 281 IMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMR 314 (376)
Q Consensus 281 imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~ 314 (376)
++|==|-+++|+.+.+++.++.+++. .|-.||.
T Consensus 158 ~Vv~kgvNd~ei~~l~e~~~~~~~~l-rfIE~m~ 190 (322)
T COG2896 158 TVLMKGVNDDEIEDLLEFAKERGAQL-RFIELMP 190 (322)
T ss_pred EEEecCCCHHHHHHHHHHHhhcCCce-EEEEEee
Confidence 98877999999999999999999843 3335553
|
|
| >PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.8e-12 Score=125.70 Aligned_cols=171 Identities=15% Similarity=0.204 Sum_probs=133.4
Q ss_pred EEEEeeeCCccCCCCcCCCCCCC--CCCCCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhC
Q 017179 129 TATIMILGDTCTRGCRFCNVKTS--RAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK 206 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~--r~~~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~ 206 (376)
...++.+++.|+.+|.||..... +....++.+++.+.++.+.+.|+..|.||||+---.+ .|.++++.+++.
T Consensus 16 ~~l~i~iT~~CNl~C~~C~~~~~~~~~~~~~~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~-----~~~~il~~~~~~- 89 (378)
T PRK05301 16 LWLLAELTYRCPLQCPYCSNPLDLARHGAELSTEEWIRVLREARALGALQLHFSGGEPLLRK-----DLEELVAHAREL- 89 (378)
T ss_pred eEEEEEecCccCcCCCCCCCccccccccCCCCHHHHHHHHHHHHHcCCcEEEEECCccCCch-----hHHHHHHHHHHc-
Confidence 55566789999999999986532 2223589999999999999999999999999742222 377889888764
Q ss_pred CCcEEEEecCCCCCChHHHHHHHHcCcccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec
Q 017179 207 PNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 285 (376)
Q Consensus 207 p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl 285 (376)
++.+.+.+--..-+++.++.|+++|++.+...+++. ++.+..++..+.+|++.++.++.+++ .|+.+...+++ .
T Consensus 90 -g~~~~i~TNG~ll~~~~~~~L~~~g~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~---~g~~v~i~~vv-~ 164 (378)
T PRK05301 90 -GLYTNLITSGVGLTEARLAALKDAGLDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKA---HGYPLTLNAVI-H 164 (378)
T ss_pred -CCcEEEECCCccCCHHHHHHHHHcCCCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHH---CCCceEEEEEe-e
Confidence 355555554332267889999999999999999986 58899998444589999999999998 46655444433 3
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 286 GETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 286 GET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
..+.+++.+.++++.+++++.+.+.
T Consensus 165 ~~N~~~i~~~~~~~~~lgv~~i~~~ 189 (378)
T PRK05301 165 RHNIDQIPRIIELAVELGADRLELA 189 (378)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 7899999999999999999988874
|
|
| >TIGR01210 conserved hypothetical protein TIGR01210 | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.1e-12 Score=126.12 Aligned_cols=198 Identities=16% Similarity=0.278 Sum_probs=139.7
Q ss_pred cEEEEeeeCCccCC----CCcCCCCCCCCCCCCCCchhHHHHHHHHHH-CCCcE-----EEEEeee---CCCCCcccHHH
Q 017179 128 ATATIMILGDTCTR----GCRFCNVKTSRAPPPPDPDEPTNVAEAIAS-WGLDY-----VVITSVD---RDDLADQGSGH 194 (376)
Q Consensus 128 ~tat~m~i~d~C~~----~C~FC~v~~~r~~~~l~~eEi~~~a~al~~-~G~~e-----IvLTsg~---r~dl~d~g~~~ 194 (376)
.+.+++..+.||+. +|.||++.... ....+++++.+.++.+.+ .+.++ -++|+|. ...++ .+.
T Consensus 14 ~~~~~i~~srGC~~~~~g~C~FC~~~~~~-~r~~s~e~i~~~i~~~~~~~~~~~~~~~ikif~sgsf~D~~~~~---~~~ 89 (313)
T TIGR01210 14 KSLTIILRTRGCYWAREGGCYMCGYLADS-SPEVTEENLINQFDEAIEKYKEKIKDFVIKIFTSGSFLDDREVP---KET 89 (313)
T ss_pred ceEEEEEeCCCCCCCCCCcCccCCCCCCC-CCCCChhHHHHHHHHHHHHhhcccccEEEEEecCCCcCCcCcCC---HHH
Confidence 35566777999999 69999866432 123688888888777654 34332 2356662 22233 456
Q ss_pred HHHHHHHHHhhCC--CcEEEEecCCCCCChHHHHHHHHcCcc-cccccccch-HHHHH-hhcCCCCCHHHHHHHHHHHHH
Q 017179 195 FAQTVRKLKELKP--NMLIEALVPDFRGNNGCVREVAKSGLN-VFAHNIETV-EELQS-AVRDHRANFKQSLDVLMMAKD 269 (376)
Q Consensus 195 ~~elvr~Ik~~~p--~i~Ie~l~pd~~g~~e~l~~L~~aGld-~i~h~lEtv-~~l~~-~vr~r~~t~e~~L~vl~~ak~ 269 (376)
+.++++.|++... .+.+++ -|+.. +++.|+.|+++|.+ .+..++|+. +++++ .|+ ++++.++..++++.+++
T Consensus 90 ~~~i~~~l~~~~~~~~i~~es-rpd~i-~~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~in-Kg~t~~~~~~ai~~~~~ 166 (313)
T TIGR01210 90 RNYIFEKIAQRDNLKEVVVES-RPEFI-DEEKLEELRKIGVNVEVAVGLETANDRIREKSIN-KGSTFEDFIRAAELARK 166 (313)
T ss_pred HHHHHHHHHhcCCcceEEEEe-CCCcC-CHHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhC-CCCCHHHHHHHHHHHHH
Confidence 7788888876321 234443 56654 78999999999998 699999985 59995 798 89999999999999999
Q ss_pred hCCCCceEEEeEEEec-CC----CHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCc------ccCCh---HHHHHHH
Q 017179 270 YVPAGTLTKTSIMLGC-GE----TPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVS------EYITP---EAFERYR 335 (376)
Q Consensus 270 ~~p~Gi~tkt~imvGl-GE----T~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~------~~v~p---e~~~~l~ 335 (376)
.|+.++.++|+|+ |+ +.+++.++++.+.+++ +.+.+.+. .| .+++++. .|.+| ...+.|+
T Consensus 167 ---~Gi~v~~~~i~G~P~~se~ea~ed~~~ti~~~~~l~-~~vs~~~l-~v-~~gT~l~~~~~~G~~~pp~lws~~e~l~ 240 (313)
T TIGR01210 167 ---YGAGVKAYLLFKPPFLSEKEAIADMISSIRKCIPVT-DTVSINPT-NV-QKGTLVEFLWNRGLYRPPWLWSVAEVLK 240 (313)
T ss_pred ---cCCcEEEEEEecCCCCChhhhHHHHHHHHHHHHhcC-CcEEEECC-EE-eCCCHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 5899999999999 64 5567778999999998 88887533 23 2344432 23445 4556666
Q ss_pred HHH
Q 017179 336 ALG 338 (376)
Q Consensus 336 ~~a 338 (376)
+..
T Consensus 241 e~~ 243 (313)
T TIGR01210 241 EAK 243 (313)
T ss_pred HHH
Confidence 664
|
This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes. |
| >PRK06294 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.4e-13 Score=134.21 Aligned_cols=174 Identities=13% Similarity=0.236 Sum_probs=128.0
Q ss_pred EEEeeeCCccCCCCcCCCCCCCCCC-CCCC--chhHHHH-HHHHHH----CCCcEEEEEeeeCCCCCcccHHHHHHHHHH
Q 017179 130 ATIMILGDTCTRGCRFCNVKTSRAP-PPPD--PDEPTNV-AEAIAS----WGLDYVVITSVDRDDLADQGSGHFAQTVRK 201 (376)
Q Consensus 130 at~m~i~d~C~~~C~FC~v~~~r~~-~~l~--~eEi~~~-a~al~~----~G~~eIvLTsg~r~dl~d~g~~~~~elvr~ 201 (376)
.-|+-+ --|...|.||.+...... ...+ .+.+.++ .+.... ..++.|.+.||+..-++ .+.+.++++.
T Consensus 8 ~lYiHI-PFC~~~C~yC~f~~~~~~~~~~~~y~~~l~~E~~~~~~~~~~~~~i~~iy~GGGTPs~l~---~~~l~~ll~~ 83 (370)
T PRK06294 8 ALYIHI-PFCTKKCHYCSFYTIPYKEESVSLYCNAVLKEGLKKLAPLRCSHFIDTVFFGGGTPSLVP---PALIQDILKT 83 (370)
T ss_pred EEEEEe-CCccCcCCCCcCcccCCCccCHHHHHHHHHHHHHHHhhhhccCCceeEEEECCCccccCC---HHHHHHHHHH
Confidence 444443 579999999998764211 1111 1112222 221221 23577888888765444 4678888888
Q ss_pred HHhh-CCCcEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCce-EE
Q 017179 202 LKEL-KPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TK 278 (376)
Q Consensus 202 Ik~~-~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~-tk 278 (376)
|++. ...+.+++ .|+.. +.+.++.|+++|++.+..++|+.+ ++++.++ |+++.++.++.++.+++ .|+. ++
T Consensus 84 i~~~~~~eit~E~-~P~~~-~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~-R~~~~~~~~~ai~~~~~---~g~~~v~ 157 (370)
T PRK06294 84 LEAPHATEITLEA-NPENL-SESYIRALALTGINRISIGVQTFDDPLLKLLG-RTHSSSKAIDAVQECSE---HGFSNLS 157 (370)
T ss_pred HHhCCCCeEEEEe-CCCCC-CHHHHHHHHHCCCCEEEEccccCCHHHHHHcC-CCCCHHHHHHHHHHHHH---cCCCeEE
Confidence 8653 12456654 44432 789999999999999999999765 9999999 89999999999999999 4674 89
Q ss_pred EeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 279 TSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 279 t~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
.++|+|+ |||.+++.++++.+.+++++.+.+..+.
T Consensus 158 ~Dli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~ 193 (370)
T PRK06294 158 IDLIYGLPTQSLSDFIVDLHQAITLPITHISLYNLT 193 (370)
T ss_pred EEeecCCCCCCHHHHHHHHHHHHccCCCeEEEeeeE
Confidence 9999999 9999999999999999999999886664
|
|
| >KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.5e-13 Score=131.51 Aligned_cols=190 Identities=19% Similarity=0.259 Sum_probs=140.4
Q ss_pred EEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCC-CcccHHHHHHHHHHHHhhCC
Q 017179 130 ATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDL-ADQGSGHFAQTVRKLKELKP 207 (376)
Q Consensus 130 at~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl-~d~g~~~~~elvr~Ik~~~p 207 (376)
.-++.+.-+|-+.|.||--+..++.. +.+++++++.++..-+.|+.+|.+|+-|...+ .|-| ..+..++.++.+..|
T Consensus 188 ieIi~intgclgaCtyckTkharg~l~sy~~dslvervrt~f~egv~eIwltsedTgaygrdig-~slp~ll~klv~~iP 266 (547)
T KOG4355|consen 188 IEIISINTGCLGACTYCKTKHARGLLASYPKDSLVERVRTSFEEGVCEIWLTSEDTGAYGRDIG-KSLPKLLWKLVEVIP 266 (547)
T ss_pred eEEEEeccccccccccccccccccccccCCHHHHHHHHHHHHhcCcEEEEecccccchhhhhhh-hhhHHHHHHHHHhcc
Confidence 34566788999999999988877654 58999999999999999999999999874433 2223 235666777766666
Q ss_pred C---cEEEEecCCCCCChHHHHHHHH--cCccccccc---cc-chHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEE
Q 017179 208 N---MLIEALVPDFRGNNGCVREVAK--SGLNVFAHN---IE-TVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTK 278 (376)
Q Consensus 208 ~---i~Ie~l~pd~~g~~e~l~~L~~--aGld~i~h~---lE-tv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tk 278 (376)
. +++..-.|.+ -.+.+..++. -.+.+|... ++ .++.++-.|+ |-+...++-.+.+.+.+..|+ +.+.
T Consensus 267 e~cmlr~gmTnpP~--ilehl~e~a~vlrhp~vYsflhvpvqsgsdsvl~emk-reyc~~dfk~Vvd~LterVPg-i~IA 342 (547)
T KOG4355|consen 267 ESCMLRAGMTNPPY--ILEHLEEAAFVLRHPRVYSFLHVPVQSGSDSVLTEMK-REYCNFDFKIVVDFLTERVPG-ITIA 342 (547)
T ss_pred hhhhhhhcCCCCch--HHHHHHHHHHHhcCCeEEEEEecccccCchhHHHHHH-HHHhhhhHHHHHHHHHhhCCC-cEEe
Confidence 2 3333333433 2344443332 123444332 34 6789999999 888889999999999999985 9999
Q ss_pred EeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCCCCcc
Q 017179 279 TSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSE 324 (376)
Q Consensus 279 t~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~~v~~ 324 (376)
|+||.|| |||+|||.++|+.+++..+-.+.|.||+ ||+....++..
T Consensus 343 TDiIcgFPtETdeDFeeTmeLv~kYKFPslfInQfyPRpGTPAAkmkk 390 (547)
T KOG4355|consen 343 TDIICGFPTETDEDFEETMELVRKYKFPSLFINQFYPRPGTPAAKMKK 390 (547)
T ss_pred eeeeecCCCCchHHHHHHHHHHHHccCchhhhhhcCCCCCChHHhhhc
Confidence 9999999 9999999999999999999999999998 55433333433
|
|
| >PRK06582 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.7e-12 Score=130.06 Aligned_cols=174 Identities=10% Similarity=0.154 Sum_probs=130.0
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCCCCCc----hhHHHHHHHHH----HCCCcEEEEEeeeCCCCCcccHHHHHHHHH
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPPPPDP----DEPTNVAEAIA----SWGLDYVVITSVDRDDLADQGSGHFAQTVR 200 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~~l~~----eEi~~~a~al~----~~G~~eIvLTsg~r~dl~d~g~~~~~elvr 200 (376)
..-|+-+ --|...|.||.+.+..... ... +-+.++++... ...++.|.|.||+..-++ .+.+.++++
T Consensus 12 ~~lYiHi-PFC~~~C~yC~f~~~~~~~-~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l~---~~~l~~ll~ 86 (390)
T PRK06582 12 LSIYIHW-PFCLSKCPYCDFNSHVAST-IDHNQWLKSYEKEIEYFKDIIQNKYIKSIFFGGGTPSLMN---PVIVEGIIN 86 (390)
T ss_pred eEEEEEe-CCCcCcCCCCCCeeccCCC-CCHHHHHHHHHHHHHHHHHHccCCceeEEEECCCccccCC---HHHHHHHHH
Confidence 3444433 5899999999997642111 111 11222222222 234788999888765444 466777888
Q ss_pred HHHhhC--C---CcEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCC
Q 017179 201 KLKELK--P---NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAG 274 (376)
Q Consensus 201 ~Ik~~~--p---~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~G 274 (376)
.|++.+ + .+.+++-..++ +.+.++.|+++|++.+..++|+.+ ++++.+. |.++.++.++.++.+++. +
T Consensus 87 ~i~~~~~~~~~~eitiE~nP~~~--~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~lg-R~h~~~~~~~ai~~~~~~---~ 160 (390)
T PRK06582 87 KISNLAIIDNQTEITLETNPTSF--ETEKFKAFKLAGINRVSIGVQSLKEDDLKKLG-RTHDCMQAIKTIEAANTI---F 160 (390)
T ss_pred HHHHhCCCCCCCEEEEEeCCCcC--CHHHHHHHHHCCCCEEEEECCcCCHHHHHHcC-CCCCHHHHHHHHHHHHHh---C
Confidence 887753 2 35566533234 789999999999999999999764 9999999 899999999999999984 3
Q ss_pred ceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 275 TLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 275 i~tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
..++.++|+|+ |+|.+++.++++.+.+++++.|.+.++.
T Consensus 161 ~~v~~DlI~GlPgqt~e~~~~~l~~~~~l~p~his~y~L~ 200 (390)
T PRK06582 161 PRVSFDLIYARSGQTLKDWQEELKQAMQLATSHISLYQLT 200 (390)
T ss_pred CcEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEEecCE
Confidence 56999999999 9999999999999999999999987664
|
|
| >COG1032 Fe-S oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.1e-12 Score=131.72 Aligned_cols=190 Identities=20% Similarity=0.259 Sum_probs=131.9
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCccc--HHHHHHHHH-HHHhh
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQG--SGHFAQTVR-KLKEL 205 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g--~~~~~elvr-~Ik~~ 205 (376)
....+.++.||+++|+||.+.........+++.+++.++.+.+.|++.+.+..++.-.+...+ .....+++. .+.+.
T Consensus 198 ~~~~ve~~RGCp~~C~FC~~~~~~~~r~~~~~~v~~ei~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~~~~~ 277 (490)
T COG1032 198 RAFSVETSRGCPRGCRFCSITKHFKYRRRRPERVVEEIKELIEEGGKRVVFFVDDIFLYGSPALNDEKRFELLSLELIER 277 (490)
T ss_pred eEEEEEeccCCCCCCCCCCCcccccccCCCHHHHHHHHHHHHHHhhhcCcccccceeecCCccccchhhcccchHHHHHH
Confidence 466777899999999999998642123577888888888888888877664444321111100 112233332 23322
Q ss_pred C-C-CcEEEEec----CCCCCChHHHHHHHHcCcccccccccc-hHHHHHhhcCCCCCHHHHHH-HHHHHHHhCCCCceE
Q 017179 206 K-P-NMLIEALV----PDFRGNNGCVREVAKSGLNVFAHNIET-VEELQSAVRDHRANFKQSLD-VLMMAKDYVPAGTLT 277 (376)
Q Consensus 206 ~-p-~i~Ie~l~----pd~~g~~e~l~~L~~aGld~i~h~lEt-v~~l~~~vr~r~~t~e~~L~-vl~~ak~~~p~Gi~t 277 (376)
. + .-.+.... +|...+++.+..+..+|...+..++|+ ++++++.++ ++.+.++.++ .++.+++ .|+.+
T Consensus 278 ~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~g~~~~~iG~Esgs~~~l~~~~-k~~~~~~~~~~a~~~~~~---~~~~~ 353 (490)
T COG1032 278 GLRKGCRVHISAPSLRADTVTDEELLKLLREAGLRRVYIGIESGSEELLKKIN-KGITTEEVLEEAVKIAKE---HGLRV 353 (490)
T ss_pred hcccCceeeeeccccCchhcCHHHHHHHHhhCCCcceEEeccCCCHHHHHHHh-CCCChHHHHHHHHHHHHh---CCcee
Confidence 2 1 11223333 344323778888999999999999996 469999999 8999999995 9999988 57889
Q ss_pred EEeEEEec-CCCHHHHHHH---HHHHHHcCCc-EEEeecCCCCCCCCCCCcc
Q 017179 278 KTSIMLGC-GETPDQVVST---MEKVRAAGVD-VMTFGQYMRPSKRHMPVSE 324 (376)
Q Consensus 278 kt~imvGl-GET~ee~~e~---L~~Lrel~vd-~v~~~qY~~P~~~~~~v~~ 324 (376)
+.++|+|+ |||++|+.++ ++++++.+.. .+.+ .++.| ..+++...
T Consensus 354 ~~~~i~G~pget~ed~~~t~~~~~~~~~~~~~~~~~~-~~~~p-~p~t~~~~ 403 (490)
T COG1032 354 KLYFIVGLPGETEEDVKETIELAKFIKKLGPKLYVSP-SPFVP-LPGTPLQE 403 (490)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHHHhCccceEEE-eeeeC-CCCCchhh
Confidence 99999999 9999999999 8899999986 5655 44566 44555444
|
|
| >TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.2e-11 Score=124.14 Aligned_cols=215 Identities=17% Similarity=0.218 Sum_probs=149.1
Q ss_pred ccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCC-----CC---CCCCCchhHHHHHHHHHHC--CCcEEEEEe-eeCC
Q 017179 117 GECWSGGETGTATATIMILGDTCTRGCRFCNVKTS-----RA---PPPPDPDEPTNVAEAIASW--GLDYVVITS-VDRD 185 (376)
Q Consensus 117 ~ec~~~~~~~~~tat~m~i~d~C~~~C~FC~v~~~-----r~---~~~l~~eEi~~~a~al~~~--G~~eIvLTs-g~r~ 185 (376)
..||+...|...-.-.+.++.+|+.+|.||.-... +. ...++++|+++.++.+... +++.|.|+| |+.-
T Consensus 12 hpc~~~~~~~~~~r~~~~vt~~CNl~C~yC~~~~~~~~esrpg~~~~~Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEPL 91 (442)
T TIGR01290 12 HPCYSVEAHHYFARMHLAVAPACNIQCNYCNRKYDCANESRPGVVSELLTPEQALRKARQVAAEIPQLSVVGIAGPGDPL 91 (442)
T ss_pred CCCCChhhccCcCEEEEecCCCCCCcCcCCCCCCCCCcCCCCccccccCCHHHHHHHHHHHHHhcCCCCEEEEecCCCcc
Confidence 46887544444344457789999999999986532 21 1238999999999988764 678899998 7532
Q ss_pred CCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhh----cCC--CCC--
Q 017179 186 DLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAV----RDH--RAN-- 256 (376)
Q Consensus 186 dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~v----r~r--~~t-- 256 (376)
..+ +...++++.+++..|++.+.+.|-.+. .++.++.|++.|+|.+...+..++ +++.++ +.+ +++
T Consensus 92 l~~----e~~~~~l~~~~~~~~~i~i~lsTNG~~-l~e~i~~L~~~gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~ 166 (442)
T TIGR01290 92 ANI----GKTFQTLELVARQLPDVKLCLSTNGLM-LPEHVDRLVDLGVGHVTITINAIDPAVGEKIYPWVWYEGERYTGR 166 (442)
T ss_pred cCc----cccHHHHHHHHHhcCCCeEEEECCCCC-CHHHHHHHHHCCCCeEEEeccCCCHHHHhhcchhhccccccccCc
Confidence 212 235678888888888888887775543 478899999999999998888654 666654 111 111
Q ss_pred ------HHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCC-CCC-CCCCCCc--ccC
Q 017179 257 ------FKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM-RPS-KRHMPVS--EYI 326 (376)
Q Consensus 257 ------~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~-~~~~~v~--~~v 326 (376)
++..++.|+.+.+ .|+.++..+++=-|.+++|+.+..+++++++++.+.+-+|. .|. ....++. +.+
T Consensus 167 ~~~~il~e~~l~~l~~l~~---~G~~v~v~~vlIpGiND~~i~~l~~~~~~lg~~~~nl~p~~~~p~~G~~~~~~~~~~p 243 (442)
T TIGR01290 167 EAADLLIERQLEGLEKLTE---RGILVKVNSVLIPGINDEHLVEVSKQVKELGAFLHNVMPLISAPEHGTVYGLNGQREP 243 (442)
T ss_pred chHHHHHHHHHHHHHHHHh---CCCeEEEEEEeeCCcCHHHHHHHHHHHHhCCCcEEEeecCCCccccCCccCcCCCCCc
Confidence 5566788888887 46766666665557788999999999999999888776664 231 0111222 345
Q ss_pred ChHHHHHHHHHHH
Q 017179 327 TPEAFERYRALGM 339 (376)
Q Consensus 327 ~pe~~~~l~~~a~ 339 (376)
++++++.+++...
T Consensus 244 s~e~l~~~~~~~~ 256 (442)
T TIGR01290 244 DPDELAALRDRLE 256 (442)
T ss_pred CHHHHHHHHHHHH
Confidence 6677777766543
|
This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model. |
| >PRK08629 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-11 Score=125.40 Aligned_cols=178 Identities=10% Similarity=0.143 Sum_probs=125.1
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCC-CCCC--CCchhHHHHHHHHHHCCC--cEEEEEeeeCCCCCcccHHHHHHHHHHHH
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSR-APPP--PDPDEPTNVAEAIASWGL--DYVVITSVDRDDLADQGSGHFAQTVRKLK 203 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r-~~~~--l~~eEi~~~a~al~~~G~--~eIvLTsg~r~dl~d~g~~~~~elvr~Ik 203 (376)
..-|+-+ --|...|.||.+.+.. .... .-.+.+.++++.+.+.|. ..|.|-||+ +.+. .+.+.++++.|+
T Consensus 53 ~~LYvHI-PFC~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~siy~GGGT-Ps~l---~~~L~~ll~~i~ 127 (433)
T PRK08629 53 YMLYAHV-PFCHTLCPYCSFHRFYFKEDKARAYFISLRKEMEMVKELGYDFESMYVGGGT-TTIL---EDELAKTLELAK 127 (433)
T ss_pred EEEEEEe-CCccCcCCCCCCcCcCCCcchHHHHHHHHHHHHHHHHhcCCceEEEEECCCc-cccC---HHHHHHHHHHHH
Confidence 3444444 4699999999998632 1111 124666666666666553 455555554 3332 356888888888
Q ss_pred hhCCC--cEEEEecCCCCCChHHHHHHHHcCcccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017179 204 ELKPN--MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (376)
Q Consensus 204 ~~~p~--i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~ 280 (376)
+.++- +.+++ .|+.. +++.++.|+++ ++.+..++|+. +++++.|+ |.+++.+..++++.+++....+..+..+
T Consensus 128 ~~f~i~eis~E~-~P~~l-t~e~L~~l~~~-vnrlsiGVQS~~d~vLk~~g-R~h~~~~~~~~~~~l~~~~~~~~~v~~D 203 (433)
T PRK08629 128 KLFSIKEVSCES-DPNHL-DPPKLKQLKGL-IDRLSIGVQSFNDDILKMVD-RYEKFGSGQETFEKIMKAKGLFPIINVD 203 (433)
T ss_pred HhCCCceEEEEe-CcccC-CHHHHHHHHHh-CCeEEEecCcCCHHHHHHcC-CCCChhHHHHHHHHHHHHhccCCeEEEE
Confidence 77642 44443 55543 78999999999 99999999976 59999998 8887766644444444431122347999
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CC
Q 017179 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RP 315 (376)
Q Consensus 281 imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P 315 (376)
+|+|| |||.+++.++++.+.+++++.|++.+++ .|
T Consensus 204 lI~GlPgqT~e~~~~~l~~~~~l~p~~is~y~L~~~~ 240 (433)
T PRK08629 204 LIFNFPGQTDEVLQHDLDIAKRLDPRQITTYPLMKSH 240 (433)
T ss_pred EEccCCCCCHHHHHHHHHHHHhCCCCEEEEccceecc
Confidence 99999 9999999999999999999999998775 44
|
|
| >TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.5e-11 Score=119.18 Aligned_cols=170 Identities=16% Similarity=0.245 Sum_probs=131.1
Q ss_pred EEEeeeCCccCCCCcCCCCCCC--CCCCCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCC
Q 017179 130 ATIMILGDTCTRGCRFCNVKTS--RAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (376)
Q Consensus 130 at~m~i~d~C~~~C~FC~v~~~--r~~~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p 207 (376)
..++.+++.|+.+|.||..... +....++.+++.+.++++.+.|+..|.||||+.--.+ +|.++++.+++.
T Consensus 8 ~l~ieiT~~CNl~C~~C~~~~~~~~~~~~l~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~-----~~~~ii~~~~~~-- 80 (358)
T TIGR02109 8 WLLAELTHRCPLQCPYCSNPLELARRKAELTTEEWTDVLTQAAELGVLQLHFSGGEPLARP-----DLVELVAHARRL-- 80 (358)
T ss_pred EEEEeeccccCcCCCCCCCChhcccccCCCCHHHHHHHHHHHHhcCCcEEEEeCccccccc-----cHHHHHHHHHHc--
Confidence 3446689999999999986532 1123589999999999999999999999999743222 267888888775
Q ss_pred CcEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC
Q 017179 208 NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG 286 (376)
Q Consensus 208 ~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlG 286 (376)
++.+.+.+-...-+++.++.|+++|++.+...+++.+ +.+.+++....++++.++.++.+++ .|+.+...+++ ..
T Consensus 81 g~~~~l~TNG~ll~~e~~~~L~~~g~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~---~g~~v~v~~vv-~~ 156 (358)
T TIGR02109 81 GLYTNLITSGVGLTEARLDALADAGLDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKA---AGLPLTLNFVI-HR 156 (358)
T ss_pred CCeEEEEeCCccCCHHHHHHHHhCCCCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHh---CCCceEEEEEe-cc
Confidence 3556656543333688999999999999999999874 8888888434579999999999998 46655443333 27
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEee
Q 017179 287 ETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 287 ET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
.+.+++.+.++++++++++.+.+.
T Consensus 157 ~N~~~l~~~~~~~~~lg~~~i~~~ 180 (358)
T TIGR02109 157 HNIDQIPEIIELAIELGADRVELA 180 (358)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEE
Confidence 899999999999999999988763
|
This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. |
| >TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.8e-10 Score=102.60 Aligned_cols=163 Identities=15% Similarity=0.171 Sum_probs=115.6
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCC---CCCCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhh
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSR---APPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r---~~~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~ 205 (376)
..++++.+++|+.+|+||..+... ....++++++.+.++.. ...++.|.|+||+.--.+ ++.++++.+++.
T Consensus 16 ~~~~~~~t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~-~~~~~~i~~sGGEPll~~-----~l~~li~~~~~~ 89 (191)
T TIGR02495 16 KLAFTIFFQGCNLKCPYCHNPELIDREGSGEIEVEFLLEFLRSR-QGLIDGVVITGGEPTLQA-----GLPDFLRKVREL 89 (191)
T ss_pred CeEEEEEcCCCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHh-cCCCCeEEEECCcccCcH-----hHHHHHHHHHHC
Confidence 556667799999999999887421 11248888888877764 234789999998742212 277888888774
Q ss_pred CCCcEEEEecCCCCCChHHHHHHHHcC-cccccccccchHHHHHhhcCCCCCHH-HHHHHHHHHHHhCCCCceEEEeEEE
Q 017179 206 KPNMLIEALVPDFRGNNGCVREVAKSG-LNVFAHNIETVEELQSAVRDHRANFK-QSLDVLMMAKDYVPAGTLTKTSIML 283 (376)
Q Consensus 206 ~p~i~Ie~l~pd~~g~~e~l~~L~~aG-ld~i~h~lEtv~~l~~~vr~r~~t~e-~~L~vl~~ak~~~p~Gi~tkt~imv 283 (376)
++.+.+.+.-. .++.++.+.++| ++.+...++..++.+..+..+..+++ +.++.++.+++.... +.+.+.++-
T Consensus 90 --g~~v~i~TNg~--~~~~l~~l~~~g~~~~v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~gi~-~~i~~~v~~ 164 (191)
T TIGR02495 90 --GFEVKLDTNGS--NPRVLEELLEEGLVDYVAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLRSGIP-FELRTTVHR 164 (191)
T ss_pred --CCeEEEEeCCC--CHHHHHHHHhcCCCcEEEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHHcCCC-EEEEEEEeC
Confidence 56666655443 577888999988 58888888876666666653445665 899999999984222 345555555
Q ss_pred ecCCCHHHHHHHHHHHHHcC
Q 017179 284 GCGETPDQVVSTMEKVRAAG 303 (376)
Q Consensus 284 GlGET~ee~~e~L~~Lrel~ 303 (376)
|.-. ++|+.+.++++++.+
T Consensus 165 ~~~~-~~ei~~~~~~l~~~~ 183 (191)
T TIGR02495 165 GFLD-EEDLAEIATRIKENG 183 (191)
T ss_pred CCCC-HHHHHHHHHHhccCC
Confidence 6633 779999999999887
|
This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD. |
| >COG2516 Biotin synthase-related enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-10 Score=113.45 Aligned_cols=202 Identities=18% Similarity=0.293 Sum_probs=135.0
Q ss_pred EEEEeeeC--CccCCCCcCCCCCCCCC--CCC-------CCchhHHHHHHHHHH-C-CCcEEEEEeeeCCCCCcccHHHH
Q 017179 129 TATIMILG--DTCTRGCRFCNVKTSRA--PPP-------PDPDEPTNVAEAIAS-W-GLDYVVITSVDRDDLADQGSGHF 195 (376)
Q Consensus 129 tat~m~i~--d~C~~~C~FC~v~~~r~--~~~-------l~~eEi~~~a~al~~-~-G~~eIvLTsg~r~dl~d~g~~~~ 195 (376)
+..|+..+ .+|..+|+||.+.++.. |+. +..-.+....+.+.. . .++.|+++-.+.+... ...
T Consensus 29 ~ta~l~t~~~~~c~~~ca~c~~ar~s~a~p~~~~lsRv~w~~v~l~~~~~~~~~~~g~~~rici~~i~~p~~~----~d~ 104 (339)
T COG2516 29 TTAYLMTTYPGGCIADCAYCPQARSSTANPPKKVLSRVEWPAVALEEVLKRLFYDLGNFKRICIQQIAYPRAL----NDL 104 (339)
T ss_pred ceeeeeeecCCceeechhhChhhhhcccCCCcceeeecccccchHHHHHhHhhhhhcccccccceeecccccc----chh
Confidence 44445445 89999999999987431 211 111111122222222 2 3588888877654321 124
Q ss_pred HHHHHHHHhhC-CCcEEE-EecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhc-CCC--CCHHHHHHHHHHHHH
Q 017179 196 AQTVRKLKELK-PNMLIE-ALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVR-DHR--ANFKQSLDVLMMAKD 269 (376)
Q Consensus 196 ~elvr~Ik~~~-p~i~Ie-~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr-~r~--~t~e~~L~vl~~ak~ 269 (376)
..+++.+.-.. -.+.|. ++++-- ..+.+...+..|.|.+...+|.++ ++|++|+ .-+ ++|++.++.|+.+..
T Consensus 105 ~~i~~~~~~~~~~~itiseci~~~~--~~~~l~e~~klg~d~l~V~~daa~~~~~e~v~~~s~s~~S~e~~~~~l~~~~~ 182 (339)
T COG2516 105 KLILERLHIRLGDPITISECITAVS--LKEELEEYRKLGADYLGVAEDAANEELFEKVRKTSGSPHSWERYWEFLEKVAE 182 (339)
T ss_pred hhhhhhhhhccCCceehhhhhhccc--chHHHHHHHhcchhhhhHHHHhcCHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Confidence 45666665221 123333 233321 267788999999999999999775 9999884 223 789999999999999
Q ss_pred hCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHH
Q 017179 270 YVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEM 341 (376)
Q Consensus 270 ~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~ 341 (376)
.++.| .+..+++||+||||.++++++...+..+.-+--+. +-| .+++++..+.++ ..+++++++...
T Consensus 183 ~~~k~-rv~ihliVglGesD~~~ve~~~~v~~~g~~v~Lfa--f~P-~~gt~me~r~~~-pve~Yrk~q~a~ 249 (339)
T COG2516 183 AFGKG-RVGIHLIVGLGESDKDIVETIKRVRKRGGIVSLFA--FTP-LKGTQMENRKPP-PVERYRKIQVAR 249 (339)
T ss_pred HhccC-CcceeEEeccCCchHHHHHHHHHHHhcCceEEEEE--ecc-cccccccCCCCC-cHHHHHHHHHHH
Confidence 99875 79999999999999999999999999987554443 347 578888776443 566666665554
|
|
| >TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.5e-10 Score=108.66 Aligned_cols=169 Identities=17% Similarity=0.158 Sum_probs=123.1
Q ss_pred EEeeeCCccCCCCcCCCCCCCCCC---CCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCC
Q 017179 131 TIMILGDTCTRGCRFCNVKTSRAP---PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (376)
Q Consensus 131 t~m~i~d~C~~~C~FC~v~~~r~~---~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p 207 (376)
-.+.+++.|+.+|.||.......+ ..++++++.+.++ +.|+..|.|+||+.--.+| +.++++.+++.
T Consensus 30 l~le~T~~CNL~C~~C~~~~~~~~~~~~~ls~ee~~~~i~---e~g~~~V~i~GGEPLL~pd-----l~eiv~~~~~~-- 99 (318)
T TIGR03470 30 LMLEPLFRCNLACAGCGKIQYPAEILKQRLSVEECLRAVD---ECGAPVVSIPGGEPLLHPE-----IDEIVRGLVAR-- 99 (318)
T ss_pred EEEecccccCcCCcCCCCCcCCCcccccCCCHHHHHHHHH---HcCCCEEEEeCcccccccc-----HHHHHHHHHHc--
Confidence 335679999999999976532211 2378888776544 5799999999997322233 66788888764
Q ss_pred CcEEEEecCCCCCChHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCC
Q 017179 208 NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGE 287 (376)
Q Consensus 208 ~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGE 287 (376)
+..+.+.+--.. -.+.+..++++|.+.+...++..++.+.+++.++.+|+..++.|+.+++ .|+.+...+.+=-++
T Consensus 100 g~~v~l~TNG~l-l~~~~~~l~~~~~~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I~~l~~---~G~~v~v~~tv~~~~ 175 (318)
T TIGR03470 100 KKFVYLCTNALL-LEKKLDKFEPSPYLTFSVHLDGLREHHDASVCREGVFDRAVEAIREAKA---RGFRVTTNTTLFNDT 175 (318)
T ss_pred CCeEEEecCcee-hHHHHHHHHhCCCcEEEEEEecCchhhchhhcCCCcHHHHHHHHHHHHH---CCCcEEEEEEEeCCC
Confidence 345555553222 2455788999998888888888776666665467899999999999998 467666655443479
Q ss_pred CHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 288 TPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 288 T~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
+.+++.+.++++.++|++.+.+.+.+
T Consensus 176 n~~ei~~~~~~~~~lGv~~i~i~p~~ 201 (318)
T TIGR03470 176 DPEEVAEFFDYLTDLGVDGMTISPGY 201 (318)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 99999999999999999988885443
|
The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH |
| >COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3e-10 Score=116.08 Aligned_cols=177 Identities=16% Similarity=0.295 Sum_probs=131.4
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCC-CC-CCCC--chhHHHHHHHHHHC-----CCcEEEEEeeeCCCCCcccHHHHHHHH
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSR-AP-PPPD--PDEPTNVAEAIASW-----GLDYVVITSVDRDDLADQGSGHFAQTV 199 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r-~~-~~l~--~eEi~~~a~al~~~-----G~~eIvLTsg~r~dl~d~g~~~~~elv 199 (376)
..-|+-+ --|...|.||.+.+.- .. .+.+ .+-+.++.+..... -++.|.+=||+..-+. .+.+..++
T Consensus 35 ~slYiHi-PFC~~~C~YC~fn~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTPslL~---~~~l~~ll 110 (416)
T COG0635 35 LSLYIHI-PFCVSKCPYCDFNSHVTKRGQPVDEYLDALLEEIELVAALLGGQREVKTIYFGGGTPSLLS---PEQLERLL 110 (416)
T ss_pred eEEEEEc-ccccccCCCCCCeeeccCCCChHHHHHHHHHHHHHHHHhhcCCCCeEEEEEECCCccccCC---HHHHHHHH
Confidence 3444433 5899999999999632 11 1111 11222333333222 2567777666644443 46677777
Q ss_pred HHHHhhCC------CcEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCC
Q 017179 200 RKLKELKP------NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVP 272 (376)
Q Consensus 200 r~Ik~~~p------~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p 272 (376)
..|++.++ .+.||+-..++ +.+.++.++++|++++..++++.+ ++++.++ |.++.++..++++.+++.
T Consensus 111 ~~l~~~~~~~~~~~EitiE~nP~~~--~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lg-R~h~~~~~~~a~~~~~~~-- 185 (416)
T COG0635 111 KALRELFNDLDPDAEITIEANPGTV--EAEKFKALKEAGVNRISLGVQSFNDEVLKALG-RIHDEEEAKEAVELARKA-- 185 (416)
T ss_pred HHHHHhcccCCCCceEEEEeCCCCC--CHHHHHHHHHcCCCEEEeccccCCHHHHHHhc-CCCCHHHHHHHHHHHHHc--
Confidence 77776662 35666633345 789999999999999999999765 9999999 999999999999999994
Q ss_pred CCc-eEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CC
Q 017179 273 AGT-LTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RP 315 (376)
Q Consensus 273 ~Gi-~tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P 315 (376)
|+ .++.++|+|+ |+|.+++.++++.+.++++|.|++.+|. -|
T Consensus 186 -g~~~in~DLIyglP~QT~~~~~~~l~~a~~l~pdhis~y~L~~~p 230 (416)
T COG0635 186 -GFTSINIDLIYGLPGQTLESLKEDLEQALELGPDHLSLYSLAIEP 230 (416)
T ss_pred -CCCcEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEEeeeecCC
Confidence 44 5899999999 9999999999999999999999999884 45
|
|
| >COG1856 Uncharacterized homolog of biotin synthetase [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.8e-10 Score=104.91 Aligned_cols=203 Identities=12% Similarity=0.142 Sum_probs=149.8
Q ss_pred cEEEEeeeCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHHHCCCcEEEEEeeeC--CCCCcccHHHHHHHHHHHHhh
Q 017179 128 ATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDR--DDLADQGSGHFAQTVRKLKEL 205 (376)
Q Consensus 128 ~tat~m~i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~~G~~eIvLTsg~r--~dl~d~g~~~~~elvr~Ik~~ 205 (376)
++..+-+.|+.|..+|..|.-.......+.+..+++....++.+.|+.-++|+||.. .+.| ...|-+.++++|+.
T Consensus 10 k~~sISVTG~yC~lnC~HCg~~~L~~Mi~vt~~~l~k~~~el~kkGy~g~llSGGm~srg~VP---l~kf~d~lK~lke~ 86 (275)
T COG1856 10 KFISISVTGAYCSLNCPHCGRHYLEHMIKVTTKSLLKRCMELEKKGYEGCLLSGGMDSRGKVP---LWKFKDELKALKER 86 (275)
T ss_pred CCceEEEeccceEecChHHHHHHHHHhcccchHHHHHHHHHHHhcCceeEEEeCCcCCCCCcc---HHHHHHHHHHHHHh
Confidence 466777889999999999987765545556668899999999999999999999963 3444 78899999999987
Q ss_pred CCCcEEEEecCCCCCChHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec
Q 017179 206 KPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 285 (376)
Q Consensus 206 ~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl 285 (376)
. ++.+.+=++-. +++.++.|+.+++|++..-+=..+++.++|-.-..+.+++++.++.+++ .|+.+--||++|+
T Consensus 87 ~-~l~inaHvGfv--dE~~~eklk~~~vdvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e---~~irvvpHitiGL 160 (275)
T COG1856 87 T-GLLINAHVGFV--DESDLEKLKEELVDVVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKE---NGIRVVPHITIGL 160 (275)
T ss_pred h-CeEEEEEeeec--cHHHHHHHHHhcCcEEEEeecCChHHHHHHHcCCccHHHHHHHHHHHHH---cCceeceeEEEEe
Confidence 5 46665555433 6788999999999987654322334444443235688999999999999 5899999999999
Q ss_pred -CCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcc--cCChHHHHHHHHHHHHH
Q 017179 286 -GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSE--YITPEAFERYRALGMEM 341 (376)
Q Consensus 286 -GET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~--~v~pe~~~~l~~~a~~~ 341 (376)
+-..+.=.+.++.|.+...|.+-+.-++ |+ .++++.. .+++++....-+.|++.
T Consensus 161 ~~gki~~e~kaIdiL~~~~~DalVl~vli-Pt-pGtkm~~~~pp~~eE~i~v~~~AR~~ 217 (275)
T COG1856 161 DFGKIHGEFKAIDILVNYEPDALVLVVLI-PT-PGTKMGNSPPPPVEEAIKVVKYARKK 217 (275)
T ss_pred ccCcccchHHHHHHHhcCCCCeEEEEEEe-cC-CchhccCCCCcCHHHHHHHHHHHHHh
Confidence 5555666788999999999976664334 53 3455443 34556666666666653
|
|
| >TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.2e-10 Score=103.28 Aligned_cols=197 Identities=14% Similarity=0.186 Sum_probs=130.8
Q ss_pred EEeeeCCccCCCCcCCCCCCCC-C--CCCCCchhHHHHHHHHHHCC---CcEEEEEeeeCCCCCcccHHHHHHHHHHHHh
Q 017179 131 TIMILGDTCTRGCRFCNVKTSR-A--PPPPDPDEPTNVAEAIASWG---LDYVVITSVDRDDLADQGSGHFAQTVRKLKE 204 (376)
Q Consensus 131 t~m~i~d~C~~~C~FC~v~~~r-~--~~~l~~eEi~~~a~al~~~G---~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~ 204 (376)
.+++.+.+|+.+|.||...... . ...++++++.+.++.+...+ .+.|.||||+.- + . .+.+.++++.+++
T Consensus 17 ~~~v~~~gCnl~C~~C~~~~~~~~~~~~~~s~e~i~~~i~~~~~~~~~~~~~I~~~GGEPl-l-~--~~~~~~li~~~~~ 92 (235)
T TIGR02493 17 RFVVFMQGCPLRCQYCHNPDTWDLKGGTEVTPEELIKEVGSYKDFFKASGGGVTFSGGEPL-L-Q--PEFLSELFKACKE 92 (235)
T ss_pred eEEEEECCCCCcCCCCCChhhccCCCCEECCHHHHHHHHHHhHHHHhcCCCeEEEeCcccc-c-C--HHHHHHHHHHHHH
Confidence 4557789999999999865321 1 12489999988887766542 258999998632 2 1 3345688998887
Q ss_pred hCCCcEEEEecCCCC-CChHHHHHHHHcCcccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEE
Q 017179 205 LKPNMLIEALVPDFR-GNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIM 282 (376)
Q Consensus 205 ~~p~i~Ie~l~pd~~-g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~im 282 (376)
. ++.+.+.+..+. ...+.+..+.+ .+|.+...+++. ++.+.+++ + .++++.++.++.+++. |+.+...++
T Consensus 93 ~--g~~~~i~TNG~~~~~~~~~~~ll~-~~d~v~isl~~~~~~~~~~~~-g-~~~~~v~~~i~~l~~~---g~~~~v~~v 164 (235)
T TIGR02493 93 L--GIHTCLDTSGFLGGCTEAADELLE-YTDLVLLDIKHFNPEKYKKLT-G-VSLQPTLDFAKYLAKR---NKPIWIRYV 164 (235)
T ss_pred C--CCCEEEEcCCCCCccHHHHHHHHH-hCCEEEEeCCCCCHHHHHHHH-C-CCcHHHHHHHHHHHhC---CCcEEEEEe
Confidence 4 455555554432 12456676666 467788888876 58888887 3 3899999999999984 555544444
Q ss_pred E--ecCCCHHHHHHHHHHHHHcC-CcEEEeecCCCCCC--------CCCCCc--ccCChHHHHHHHHHHHH
Q 017179 283 L--GCGETPDQVVSTMEKVRAAG-VDVMTFGQYMRPSK--------RHMPVS--EYITPEAFERYRALGME 340 (376)
Q Consensus 283 v--GlGET~ee~~e~L~~Lrel~-vd~v~~~qY~~P~~--------~~~~v~--~~v~pe~~~~l~~~a~~ 340 (376)
+ |..++.+|+.+..+++++++ +..+.+.+| +|.. ...+.. ..++.++.+++++++.+
T Consensus 165 v~~~~~~n~~ei~~l~~~~~~l~~~~~~~~~p~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (235)
T TIGR02493 165 LVPGYTDSEEDIEALAEFVKTLPNVERVEVLPY-HQLGVYKWEALGIEYPLEGVKPPNKEQLERAAEIFKE 234 (235)
T ss_pred eeCCcCCCHHHHHHHHHHHHhCCCCceEEecCC-CcccHHHHHHcCCcCccCCCCCCCHHHHHHHHHHHhh
Confidence 4 44568899999999999999 567777444 3311 111111 22445667777776653
|
An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue. |
| >TIGR01211 ELP3 histone acetyltransferase, ELP3 family | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.6e-10 Score=116.36 Aligned_cols=176 Identities=15% Similarity=0.232 Sum_probs=131.8
Q ss_pred cEEEEeeeCCccC-CCCcCCCC-------CC---CCCCCC--------CCchhHHHHHHHHHHCC--Cc--EEEEEeeeC
Q 017179 128 ATATIMILGDTCT-RGCRFCNV-------KT---SRAPPP--------PDPDEPTNVAEAIASWG--LD--YVVITSVDR 184 (376)
Q Consensus 128 ~tat~m~i~d~C~-~~C~FC~v-------~~---~r~~~~--------l~~eEi~~~a~al~~~G--~~--eIvLTsg~r 184 (376)
++++.|-----|+ ..|.||-- +. +..|.. -+..++...++++...| ++ |+.|-||+-
T Consensus 67 ~~v~vm~~p~~cph~~c~~cp~~~~~~~~~~sy~~~ep~~~ra~~~~~dpy~q~~~rl~~l~~~g~~~~kvE~i~~GGTf 146 (522)
T TIGR01211 67 AVVAVMTSPHRCPHGKCLYCPGGPDSENSPQSYTGYEPAAMRGRQNDYDPYEQVTARLEQLEQIGHPVDKVELIIMGGTF 146 (522)
T ss_pred EEEEEecCCccCCCCceEeCCCCCCcCCCCcccCCCCcHhHHHHHcCCCcHHHHHHHHHHHHHhCCCCceEEEEEECCCc
Confidence 4555553346899 57999953 11 112221 24577788888999887 33 558888886
Q ss_pred CCCCcccHHHHHHHHHHHHhhCCC---------------------------cEEEEecCCCCCChHHHHHHHHcCccccc
Q 017179 185 DDLADQGSGHFAQTVRKLKELKPN---------------------------MLIEALVPDFRGNNGCVREVAKSGLNVFA 237 (376)
Q Consensus 185 ~dl~d~g~~~~~elvr~Ik~~~p~---------------------------i~Ie~l~pd~~g~~e~l~~L~~aGld~i~ 237 (376)
..++ .++...+|+.+.+..++ +.|+ .-||.. +++.|+.|+++|.+.+.
T Consensus 147 t~l~---~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiE-tRPD~i-~~e~L~~L~~~G~~rVs 221 (522)
T TIGR01211 147 PARD---LDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIE-TRPDYC-REEHIDRMLKLGATRVE 221 (522)
T ss_pred ccCC---HHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEE-EcCCcC-CHHHHHHHHHcCCCEEE
Confidence 6666 34444555554443322 2233 246655 78999999999999999
Q ss_pred ccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHH---cCCcEEEeecC
Q 017179 238 HNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRA---AGVDVMTFGQY 312 (376)
Q Consensus 238 h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET~ee~~e~L~~Lre---l~vd~v~~~qY 312 (376)
.++|+.+ ++++.|+ |+++.++..+.++.+++ .|+.+..++|+|+ |||.+++.++++.+.+ +++|.+.+.+.
T Consensus 222 lGVQS~~d~VL~~in-Rght~~~v~~Ai~~lr~---~G~~v~~~LM~GLPgqt~e~~~~t~~~l~~~~~l~pD~Ikiypl 297 (522)
T TIGR01211 222 LGVQTIYNDILERTK-RGHTVRDVVEATRLLRD---AGLKVVYHIMPGLPGSSFERDLEMFREIFEDPRFKPDMLKIYPT 297 (522)
T ss_pred EECccCCHHHHHHhC-CCCCHHHHHHHHHHHHH---cCCeEEEEeecCCCCCCHHHHHHHHHHHHhccCCCcCEEEEecc
Confidence 9999764 9999999 89999999999999999 5899999999999 9999999999999985 89999998643
|
The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases. |
| >COG1242 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.9e-10 Score=107.22 Aligned_cols=194 Identities=21% Similarity=0.312 Sum_probs=118.5
Q ss_pred ccHHHHHHHHhhc---Ch--hhhhhhcCCCCcccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCCCCC--C-CCc-h
Q 017179 90 DKYVQIKKKLREL---KL--HTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPP--P-PDP-D 160 (376)
Q Consensus 90 ~~~~~~~~~l~~~---~L--~tvce~A~cpn~~ec~~~~~~~~~tat~m~i~d~C~~~C~FC~v~~~r~~~--~-l~~-e 160 (376)
..|..+...|++. ++ .+|--...|||+.-..+ ..+|.||+...+.... + .+. +
T Consensus 6 k~y~t~~~~lr~~fg~Kv~Kv~ld~GF~CPNRDGti~------------------rGGCtFC~~~g~~d~~~~~~~~i~~ 67 (312)
T COG1242 6 KLYYTLNDYLREKFGEKVFKVTLDGGFSCPNRDGTIG------------------RGGCTFCSVAGSGDFAGQPKISIAE 67 (312)
T ss_pred hHHHHHHHHHHHHhCCeeEEEeccCCCCCCCCCCccc------------------CCceeeecCCCCCccccCcccCHHH
Confidence 3455555555533 22 34445678999974333 4579999887543111 1 233 3
Q ss_pred hHHHHHHHHH-HCCC-cEEE-EEeeeCCCCCcccHHHHHHHHHHHHhhCCC-cEEEEec-CCCCCChHHHHHHHHcC--c
Q 017179 161 EPTNVAEAIA-SWGL-DYVV-ITSVDRDDLADQGSGHFAQTVRKLKELKPN-MLIEALV-PDFRGNNGCVREVAKSG--L 233 (376)
Q Consensus 161 Ei~~~a~al~-~~G~-~eIv-LTsg~r~dl~d~g~~~~~elvr~Ik~~~p~-i~Ie~l~-pd~~g~~e~l~~L~~aG--l 233 (376)
++.+.++.+. +|+- +++. ++....- +.+ .+.+.+.-+..-.. ++ +-+.+-+ ||-. .++.++.|.+-. .
T Consensus 68 Q~~~q~~~~~kK~~~~kyiaYFQ~~TNT-yAp--vevLre~ye~aL~~-~~VVGLsIgTRPDCl-pd~VldlL~e~~~r~ 142 (312)
T COG1242 68 QFKEQAERMHKKWKRGKYIAYFQAYTNT-YAP--VEVLREMYEQALSE-AGVVGLSIGTRPDCL-PDDVLDLLAEYNKRY 142 (312)
T ss_pred HHHHHHHHHHHhhcCCcEEEEEeccccc-cCc--HHHHHHHHHHHhCc-CCeeEEeecCCCCCC-cHHHHHHHHHHhhhe
Confidence 4444555332 4554 4443 3444332 222 23333333222221 22 2333322 3432 244444444331 2
Q ss_pred cc-ccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 234 NV-FAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 234 d~-i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
++ +..+++|+. +..+.|+ |+++++.+.+.++.+++ .||.+++|+|+|| |||.+|++++++.+.++++|-|.+-
T Consensus 143 ~vWvELGLQT~h~~Tlk~iN-RgHd~~~y~dav~r~rk---rgIkvc~HiI~GLPgE~~~~mleTak~v~~~~v~GIKlH 218 (312)
T COG1242 143 EVWVELGLQTAHDKTLKRIN-RGHDFACYVDAVKRLRK---RGIKVCTHLINGLPGETRDEMLETAKIVAELGVDGIKLH 218 (312)
T ss_pred EEEEEeccchhhHHHHHHHh-cccchHHHHHHHHHHHH---cCCeEEEEEeeCCCCCCHHHHHHHHHHHHhcCCceEEEE
Confidence 21 355677776 9999999 99999999999999999 5899999999999 9999999999999999999987774
|
|
| >PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-09 Score=103.12 Aligned_cols=205 Identities=11% Similarity=0.166 Sum_probs=135.1
Q ss_pred EeeeCCccCCCCcCCCCCCC---CCCCCCCchhHHHHHHHHHHC---CCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhh
Q 017179 132 IMILGDTCTRGCRFCNVKTS---RAPPPPDPDEPTNVAEAIASW---GLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205 (376)
Q Consensus 132 ~m~i~d~C~~~C~FC~v~~~---r~~~~l~~eEi~~~a~al~~~---G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~ 205 (376)
+++...+|+.+|.||.-+.. .....++++|+++.+.....+ ..+.|++|||+.- + . .+.+.++++.+++.
T Consensus 23 ~~~f~~gCnl~C~~C~~~~~~~~~~~~~lt~eei~~~i~~~~~~~~~~~~~V~~sGGEPl-l-~--~~~~~~l~~~~k~~ 98 (246)
T PRK11145 23 FITFFQGCLMRCLYCHNRDTWDTHGGKEVTVEELMKEVVTYRHFMNASGGGVTASGGEAI-L-Q--AEFVRDWFRACKKE 98 (246)
T ss_pred EEEEECCCCCcCCCCCCHHHCCCCCCeEcCHHHHHHHHHHhHHHHhcCCCeEEEeCccHh-c-C--HHHHHHHHHHHHHc
Confidence 44567899999999986532 111248899998887765433 3467999998742 1 1 34456888999874
Q ss_pred CCCcEEEEecCCCC-CChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEE
Q 017179 206 KPNMLIEALVPDFR-GNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIML 283 (376)
Q Consensus 206 ~p~i~Ie~l~pd~~-g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imv 283 (376)
++.+.+.+-.+. ...+.++.+.+ .+|.+...+++.+ +.++.+++ .+.+..++.++.+++.... +.+.+-+|=
T Consensus 99 --g~~i~l~TNG~~~~~~~~~~~ll~-~~d~v~islk~~~~e~~~~~~g--~~~~~~l~~i~~l~~~g~~-v~i~~~li~ 172 (246)
T PRK11145 99 --GIHTCLDTNGFVRRYDPVIDELLD-VTDLVMLDLKQMNDEIHQNLVG--VSNHRTLEFARYLAKRNQK-TWIRYVVVP 172 (246)
T ss_pred --CCCEEEECCCCCCcchHHHHHHHH-hCCEEEECCCcCChhhcccccC--CChHHHHHHHHHHHhCCCc-EEEEEEEEC
Confidence 455555553332 12466777765 3787788888764 78888873 3557888888888874322 456666666
Q ss_pred ecCCCHHHHHHHHHHHHHcC-CcEEEeecCCCCCC-------CCCCCc--ccCChHHHHHHHHHHHHHhhhhh
Q 017179 284 GCGETPDQVVSTMEKVRAAG-VDVMTFGQYMRPSK-------RHMPVS--EYITPEAFERYRALGMEMGFRYV 346 (376)
Q Consensus 284 GlGET~ee~~e~L~~Lrel~-vd~v~~~qY~~P~~-------~~~~v~--~~v~pe~~~~l~~~a~~~gf~~~ 346 (376)
|+.++++|+.++.+++++++ +..+.+-+|-+++. ...++. +.+++++.+.+++++.+.|+.++
T Consensus 173 g~nd~~~ei~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~g~~~~ 245 (246)
T PRK11145 173 GWTDDDDSAHRLGEFIKDMGNIEKIELLPYHELGKHKWEAMGEEYKLDGVKPPSKETMERVKGILEQYGHKVM 245 (246)
T ss_pred CCCCCHHHHHHHHHHHHhcCCcceEEEecCCccchhHHHHcCCcccccCCCCCCHHHHHHHHHHHHHcCCccc
Confidence 77777889999999999885 55666644432210 111222 23567788888888888887654
|
|
| >TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.2e-09 Score=106.31 Aligned_cols=207 Identities=14% Similarity=0.171 Sum_probs=136.3
Q ss_pred ChhhhhhhcCCCCcccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCCCC---CCCCchhHHHHHHHHHH-CCCcEEE
Q 017179 103 KLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAP---PPPDPDEPTNVAEAIAS-WGLDYVV 178 (376)
Q Consensus 103 ~L~tvce~A~cpn~~ec~~~~~~~~~tat~m~i~d~C~~~C~FC~v~~~r~~---~~l~~eEi~~~a~al~~-~G~~eIv 178 (376)
...-++|+...|--+-. |-+.....+.++++|+.+|+||..+...++ ..++.+++.+.++.+++ .|+.+|+
T Consensus 67 ~~dp~~e~~~~~~~gl~-----hkyp~rvll~vT~~C~~~Cr~C~r~~~~~~~~~~~l~~~e~~~~i~~i~~~~~I~~Vi 141 (321)
T TIGR03822 67 RADPIGDDAHSPVPGIV-----HRYPDRVLLKPVHVCPVYCRFCFRREMVGPEGLGVLSPAELDAAFAYIADHPEIWEVI 141 (321)
T ss_pred CCCCcccccCCCCCCcc-----cCCCCEEEEEecCCCCCcCcCCCchhhcCCcccCcCCHHHHHHHHHHHHhCCCccEEE
Confidence 45667777655544321 112234445579999999999987642221 23677899998888875 4999999
Q ss_pred EEeeeCCCCCcccHHHHHHHHHHHHhhCCCc---EEEE----ecCCCCCChHHHHHHHHcCcccccccccchHHHHHhhc
Q 017179 179 ITSVDRDDLADQGSGHFAQTVRKLKELKPNM---LIEA----LVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVR 251 (376)
Q Consensus 179 LTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i---~Ie~----l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr 251 (376)
|||||.--+. ...+.++++.+++. |.+ ++.. ..|... +++.++.|+++|.. +..+++...
T Consensus 142 lSGGDPl~~~---~~~L~~ll~~l~~i-~~v~~iri~Tr~~v~~p~ri-t~ell~~L~~~g~~-v~i~l~~~h------- 208 (321)
T TIGR03822 142 LTGGDPLVLS---PRRLGDIMARLAAI-DHVKIVRFHTRVPVADPARV-TPALIAALKTSGKT-VYVALHANH------- 208 (321)
T ss_pred EeCCCcccCC---HHHHHHHHHHHHhC-CCccEEEEeCCCcccChhhc-CHHHHHHHHHcCCc-EEEEecCCC-------
Confidence 9999754333 34688888888764 443 3332 123322 68899999999954 456666532
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCceEEEeEEE--ecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChH
Q 017179 252 DHRANFKQSLDVLMMAKDYVPAGTLTKTSIML--GCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPE 329 (376)
Q Consensus 252 ~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imv--GlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe 329 (376)
++.. .++.++.++.+++ .|+.+....++ |..++.+++.++++++.++++....+.++ .|. .+....+ ++++
T Consensus 209 ~~el-~~~~~~ai~~L~~---~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~-~p~-~g~~~f~-~~~~ 281 (321)
T TIGR03822 209 AREL-TAEARAACARLID---AGIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLHHL-DLA-PGTAHFR-VTIE 281 (321)
T ss_pred hhhc-CHHHHHHHHHHHH---cCCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEec-CCC-CCccccc-CcHH
Confidence 1111 3788899999998 57777554444 88999999999999999999988777544 463 2333222 4454
Q ss_pred HHHHH
Q 017179 330 AFERY 334 (376)
Q Consensus 330 ~~~~l 334 (376)
+...+
T Consensus 282 ~~~~i 286 (321)
T TIGR03822 282 EGQAL 286 (321)
T ss_pred HHHHH
Confidence 44333
|
Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc. |
| >PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.8e-09 Score=103.43 Aligned_cols=201 Identities=13% Similarity=0.142 Sum_probs=136.0
Q ss_pred eCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHH--------HHCCCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHhh
Q 017179 135 LGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAI--------ASWGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKEL 205 (376)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al--------~~~G~~eIvLTs-g~r~dl~d~g~~~~~elvr~Ik~~ 205 (376)
.+.+|+.+|.||.-....-...++.+|+...+..+ ...|++.|+++| |+.-.. .+.+.+.|+.+++.
T Consensus 127 sq~GCnl~C~FC~tg~~g~~rnLt~~EI~~qv~~~~~~~~~~~~~~~v~nIvfmGmGEPLln----~d~v~~~i~~l~~~ 202 (368)
T PRK14456 127 SQAGCALRCSFCATGQMGFRRNLTAGEITGQVFALSDMLAERNRERGITNIVFMGMGEPLLN----TDNVFEAVLTLSTR 202 (368)
T ss_pred ecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhhccCCccEEEEeCcCccccC----HHHHHHHHHHHhcc
Confidence 47899999999987653222248899998876433 235789999999 764221 23577888888764
Q ss_pred -CC-C---cEEEEecCCCCCChHHHHHHHHcCcc-cccccccchH-HHHHhhcC---CCCCHHHHHHHHHHHHHhCCCCc
Q 017179 206 -KP-N---MLIEALVPDFRGNNGCVREVAKSGLN-VFAHNIETVE-ELQSAVRD---HRANFKQSLDVLMMAKDYVPAGT 275 (376)
Q Consensus 206 -~p-~---i~Ie~l~pd~~g~~e~l~~L~~aGld-~i~h~lEtv~-~l~~~vr~---r~~t~e~~L~vl~~ak~~~p~Gi 275 (376)
.. + -.|.+.+-. -.+.++.|.++|++ .++..+++.+ +.+.++.| +++.+++.++.++...+..+.-+
T Consensus 203 ~~~~~is~r~ItisT~G---l~~~i~~L~~~gl~~~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V 279 (368)
T PRK14456 203 KYRFSISQRKITISTVG---ITPEIDRLATSGLKTKLAVSLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGEPV 279 (368)
T ss_pred ccccCcCcCeeEEECCC---ChHHHHHHHHcCCCceEEEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 11 1 144444432 24568999999997 6899999864 99998853 36799999999985444332224
Q ss_pred eEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhh
Q 017179 276 LTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (376)
Q Consensus 276 ~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (376)
.+..-+|=|+-.+++|+.++.++++++.+ .|.+-+|. |. ...+. +.+.++..+.++++..+.|+...
T Consensus 280 ~ieyvLI~GvNDs~eda~~L~~~l~~~~~-~VnlIpyn-~~-~~~~~-~~ps~e~i~~F~~~L~~~Gi~vt 346 (368)
T PRK14456 280 TLVYMLLEGINDSPEDARKLIRFASRFFC-KINLIDYN-SI-VNIKF-EPVCSSTRERFRDRLLDAGLQVT 346 (368)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHHHhcCCC-eeEEeeec-cC-CCCCC-CCCCHHHHHHHHHHHHHCCCcEE
Confidence 45666777888999999999999999754 23333443 31 12221 23456778888888888887654
|
|
| >PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.4e-09 Score=103.86 Aligned_cols=201 Identities=13% Similarity=0.134 Sum_probs=133.3
Q ss_pred eeeCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHH---HCCCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHhhC--
Q 017179 133 MILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIA---SWGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELK-- 206 (376)
Q Consensus 133 m~i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~---~~G~~eIvLTs-g~r~dl~d~g~~~~~elvr~Ik~~~-- 206 (376)
+-.+.||+.+|.||.-....-...++.+||++.+..+. ..+++.|+++| |+.-.- .+.+.+.++.++...
T Consensus 105 issq~GC~l~C~fC~tg~~g~~r~lt~~EI~~qv~~~~~~~~~~v~~Vvf~GmGEPLln----~d~v~~~i~~l~~~~~~ 180 (343)
T PRK14469 105 ISTQVGCPVKCIFCATGQSGFVRNLTTGEIVSQILAMEKEEKKKVGNVVYMGMGEPLLN----YENVIKSIKILNHKKMK 180 (343)
T ss_pred EEecCCCCCcCcCCCCCCCCccccCCHHHHHHHHHHHHHhccCCcCeEEEEccChhhhh----HHHHHHHHHHHhchhcc
Confidence 44579999999999865422112488999988775543 24689999999 763211 334667777765321
Q ss_pred --CCcEEEEecCCCCCChHHHHHHHHcCccc-ccccccchH-HHHHhhcC--CCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017179 207 --PNMLIEALVPDFRGNNGCVREVAKSGLNV-FAHNIETVE-ELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (376)
Q Consensus 207 --p~i~Ie~l~pd~~g~~e~l~~L~~aGld~-i~h~lEtv~-~l~~~vr~--r~~t~e~~L~vl~~ak~~~p~Gi~tkt~ 280 (376)
+.-.|.+.+- |..+.++.|.++|+++ ++..+++.+ +.+.++.| +++++++.++.++...+.....+.+..-
T Consensus 181 ~~g~~~itisTn---G~~~~i~~L~~~~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~~~~~~v~i~yv 257 (343)
T PRK14469 181 NIGIRRITISTV---GIPEKIIQLAEEGLDVKLALSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQKKTGNRVTIEYI 257 (343)
T ss_pred cCCCCeEEEECC---CChHHHHHHHhhCCCcEEEEEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHHHhCCeEEEEEE
Confidence 1114554443 3467889999999994 888888764 87887653 4789999999988766542222444455
Q ss_pred EEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhh
Q 017179 281 IMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 281 imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
+|-|+..+++|+.+..++++.+++. |.+-+|- |... . .+.+.++..+.+.++..+.|+..
T Consensus 258 lI~g~NDs~ed~~~La~llk~~~~~-VnLIpyn-p~~~--~-~~~ps~e~l~~f~~~l~~~gi~v 317 (343)
T PRK14469 258 LIKGFNDEIEDAKKLAELLKGLKVF-VNLIPVN-PTVP--G-LEKPSRERIERFKEILLKNGIEA 317 (343)
T ss_pred EECCCCCCHHHHHHHHHHHhccCcE-EEEEecC-CCCc--c-CCCCCHHHHHHHHHHHHHCCCeE
Confidence 6668899999999999999998764 5554552 3211 1 12234567777777777777644
|
|
| >TIGR03278 methan_mark_10 putative methanogenesis marker protein 10 | Back alignment and domain information |
|---|
Probab=99.11 E-value=8e-09 Score=105.21 Aligned_cols=210 Identities=13% Similarity=0.167 Sum_probs=139.9
Q ss_pred CCccCC---CCcCCCCCCCC-CCCCCCchhHHHHHHHHHH-C--CCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCC
Q 017179 136 GDTCTR---GCRFCNVKTSR-APPPPDPDEPTNVAEAIAS-W--GLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN 208 (376)
Q Consensus 136 ~d~C~~---~C~FC~v~~~r-~~~~l~~eEi~~~a~al~~-~--G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~ 208 (376)
-..|.. +|.||.-.... ....++++|+++.+..... . ....|.|+||.-+-+. .++.++++.+++..
T Consensus 29 c~~C~~~~~~C~yC~~~~~e~~g~~~t~~evl~ev~~d~~~~~~~~ggVtisGGGepl~~----~~l~eLl~~lk~~g-- 102 (404)
T TIGR03278 29 CKNCPPGTKGCDYCTRSVWEINGDFIPPQVVLGEVQTSLGFRTGRDTKVTISGGGDVSCY----PELEELTKGLSDLG-- 102 (404)
T ss_pred CCcCCCCCCCCCCCCchhhhhcCCcCCHHHHHHHHHHHHHHhcCCCCEEEEECCcccccC----HHHHHHHHHHHhCC--
Confidence 356734 88888443211 1224899999999887654 2 4688999998654332 46889999999863
Q ss_pred cEEEEe-cC-CCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec
Q 017179 209 MLIEAL-VP-DFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 285 (376)
Q Consensus 209 i~Ie~l-~p-d~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl 285 (376)
+.+.+. +. ....+.+.++++++.|+|.+...+.+.+ ++++++. +..+.+..++.++.+.+. +.+..-+++=-
T Consensus 103 i~taI~~TnG~~l~~~e~~~~L~~~gld~v~iSvka~dpe~h~kl~-G~~~a~~ILe~L~~L~e~----~~v~~~ivlIP 177 (404)
T TIGR03278 103 LPIHLGYTSGKGFDDPEIAEFLIDNGVREVSFTVFATDPELRREWM-KDPTPEASLQCLRRFCES----CEVHAASVIIP 177 (404)
T ss_pred CCEEEeCCCCcccCCHHHHHHHHHcCCCEEEEecccCCHHHHHHHh-CCCCHHHHHHHHHHHHhc----CCEEEEEEEeC
Confidence 444432 43 2233788999999999999999999764 9999987 344558999999998882 33444444433
Q ss_pred CCCH-HHHHHHHHHHHHcCCcEEEeecCCCCCC-C----CC-C-Cc--ccCChHHHHHH-HHHHHHHhhhhhccchhHhh
Q 017179 286 GETP-DQVVSTMEKVRAAGVDVMTFGQYMRPSK-R----HM-P-VS--EYITPEAFERY-RALGMEMGFRYVASGPMVRS 354 (376)
Q Consensus 286 GET~-ee~~e~L~~Lrel~vd~v~~~qY~~P~~-~----~~-~-v~--~~v~pe~~~~l-~~~a~~~gf~~~~sgp~vrs 354 (376)
|-++ ++..+++++|.++++.-+.+.+| ++.. . ++ + +. +..+.+++..+ ++++.+.++...-+ |+|.-
T Consensus 178 GiND~eel~~ti~~L~~lg~~~V~L~~y-~~~g~~ky~lg~~~~~~~~~~~~~~e~~~~v~~~~~~~~i~~~g~-~~~~~ 255 (404)
T TIGR03278 178 GVNDGDVLWKTCADLESWGAKALILMRF-ANTEEQGLILGNAPIIPGIKPHTVSEFKNIVRETHKEFPIRVTGT-PLCDP 255 (404)
T ss_pred CccCcHHHHHHHHHHHHCCCCEEEEEec-ccccccccccCCcCcccCCCCCCHHHHHHHHHHHHHHhCCcccCC-ccccc
Confidence 5555 45569999999999998888666 2210 1 11 1 11 12345666666 78888877665544 68887
Q ss_pred hhhhcH
Q 017179 355 SYKAGE 360 (376)
Q Consensus 355 sy~a~~ 360 (376)
| ||.
T Consensus 256 ~--ag~ 259 (404)
T TIGR03278 256 E--TGA 259 (404)
T ss_pred C--CCC
Confidence 7 665
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon. |
| >COG0535 Predicted Fe-S oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.9e-08 Score=98.46 Aligned_cols=190 Identities=18% Similarity=0.294 Sum_probs=140.0
Q ss_pred eeeCCccCCCCcCCCCCCCCC-CCCCCchhHHHHHHHHHHCC-CcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcE
Q 017179 133 MILGDTCTRGCRFCNVKTSRA-PPPPDPDEPTNVAEAIASWG-LDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNML 210 (376)
Q Consensus 133 m~i~d~C~~~C~FC~v~~~r~-~~~l~~eEi~~~a~al~~~G-~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~ 210 (376)
+.++..|+.+|.||....... +..++.++..+....+.+.| ...+.++||+.--.+| +.++++.+++. +.+.
T Consensus 23 ~~~t~~Cnl~C~~C~~~~~~~~~~el~~~~~~~~~~~~~~~g~~~~v~~~gGEPll~~d-----~~ei~~~~~~~-~~~~ 96 (347)
T COG0535 23 IELTNRCNLACKHCYAEAGKKLPGELSTEEDLRVIDELAELGEIPVVIFTGGEPLLRPD-----LLEIVEYARKK-GGIR 96 (347)
T ss_pred EeeccccCCcCcccccccCCCCccccCHHHHHHHHHHHHHcCCeeEEEEeCCCcccccc-----HHHHHHHHhhc-CCeE
Confidence 447999999999998887653 45689999998899999999 8888899987432233 67788888765 5566
Q ss_pred EEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCC
Q 017179 211 IEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GET 288 (376)
Q Consensus 211 Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET 288 (376)
+.+.+--..-+.+.++.++++|++.+.+.++..+ +.+..+++....++..++.++.+++ .|+. ..+-+.+ +.+
T Consensus 97 ~~~~TnG~~~~~~~~~~l~~~g~~~v~iSid~~~~e~hd~~rg~~g~~~~~~~~i~~~~~---~g~~--~~~~~~v~~~n 171 (347)
T COG0535 97 VSLSTNGTLLTEEVLEKLKEAGLDYVSISLDGLDPETHDPIRGVKGVFKRAVEAIKNLKE---AGIL--VVINTTVTKIN 171 (347)
T ss_pred EEEeCCCccCCHHHHHHHHhcCCcEEEEEecCCChhhhhhhcCCCcHHHHHHHHHHHHHH---cCCe--eeEEEEEecCc
Confidence 6655533112578999999999999999999876 7767787567899999999999998 4654 2222223 788
Q ss_pred HHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCC-CcccCChHHHHHH
Q 017179 289 PDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMP-VSEYITPEAFERY 334 (376)
Q Consensus 289 ~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~-v~~~v~pe~~~~l 334 (376)
.+++.+.++.+.+++++.+.+.++. |..++.. .....+|+..+..
T Consensus 172 ~~~l~~~~~~~~~~g~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~ 217 (347)
T COG0535 172 YDELPEIADLAAELGVDELNVFPLI-PVGRGEENLELDLTPEEEELL 217 (347)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEe-ecccccccccccCCHHHHHHH
Confidence 9999999999999999877776554 4223332 3455566544433
|
|
| >PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.7e-08 Score=99.68 Aligned_cols=203 Identities=12% Similarity=0.122 Sum_probs=129.0
Q ss_pred EeeeCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHH-HCCCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHhhC---
Q 017179 132 IMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIA-SWGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELK--- 206 (376)
Q Consensus 132 ~m~i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~-~~G~~eIvLTs-g~r~dl~d~g~~~~~elvr~Ik~~~--- 206 (376)
.+-.+.+|+.+|.||.-........++++||++.+..+. ..++++|+++| |+ | +.. .+.+.+.++.+++..
T Consensus 106 cvSsq~GC~~~C~FC~tg~~~~~r~lt~~EI~~qv~~~~~~~~i~~IvfmG~GE-P-l~n--~~~vi~~l~~l~~~~gl~ 181 (349)
T PRK14463 106 CISSQVGCAMGCAFCLTGTFRLTRNLTTAEIVNQVCAVKRDVPVRNIVFMGMGE-P-LAN--LDNVIPALQILTDPDGLQ 181 (349)
T ss_pred EEEecCCcCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCccEEEEecCCc-c-hhc--HHHHHHHHHHhhcccccC
Confidence 345789999999999755422123489999998777654 45799999999 65 3 222 344555566654321
Q ss_pred -CCcEEEEecCCCCCChHHHHHHHHcCcccccccccch-HHHHHhhcC--CCCCHHHHHHHHHHHHHhCCCCceEEEeEE
Q 017179 207 -PNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKTSIM 282 (376)
Q Consensus 207 -p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~--r~~t~e~~L~vl~~ak~~~p~Gi~tkt~im 282 (376)
+.-.|.+.+-.. .+.+..+.....-.+..++++. ++++++|.| ++++.++.++.++...+....-+.+..-+|
T Consensus 182 ~s~r~itVsTnGl---~~~i~~l~~~~~~~LaiSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvLI 258 (349)
T PRK14463 182 FSTRKVTVSTSGL---VPEMEELGREVTVNLAVSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVMI 258 (349)
T ss_pred cCCceEEEECCCc---hHHHHHHhhccCeEEEEeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEe
Confidence 112455555333 2344555443311244668876 499998743 578888888888776654322244455566
Q ss_pred EecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhh
Q 017179 283 LGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 283 vGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
=|+.++++|+.++.++++++++ .|.+-+| .|. .+.. .+.+++++.+.++++..+.|+..
T Consensus 259 ~GvNDs~e~~~~L~~ll~~l~~-~vnlIPy-n~~-~~~~-~~~ps~e~i~~f~~~L~~~gi~v 317 (349)
T PRK14463 259 RGLNDSLEDAKRLVRLLSDIPS-KVNLIPF-NEH-EGCD-FRSPTQEAIDRFHKYLLDKHVTV 317 (349)
T ss_pred CCCCCCHHHHHHHHHHHhccCc-eEEEEec-CCC-CCCC-CCCCCHHHHHHHHHHHHHCCceE
Confidence 6779999999999999999876 5666566 342 1221 12245677888888877777654
|
|
| >PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.1e-08 Score=99.51 Aligned_cols=199 Identities=11% Similarity=0.132 Sum_probs=132.1
Q ss_pred eCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHHH------CCCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHhhCC
Q 017179 135 LGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIAS------WGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELKP 207 (376)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~------~G~~eIvLTs-g~r~dl~d~g~~~~~elvr~Ik~~~p 207 (376)
.+-||+.+|.||+.........++++||++.+..+.. .|++.|+++| |+.- + . .+.+.++++.+++..
T Consensus 115 sqvGC~~~C~FC~t~~~~~~r~lt~~EIv~qv~~~~~~~~~~g~~v~~Vv~~GmGEPL-l-n--~~~v~~~l~~l~~~~- 189 (356)
T PRK14455 115 TQVGCRIGCTFCASTLGGLKRDLEAGEIVAQVMLVQKYLDETEERVSHIVVMGIGEPF-D-N--YDNVMDFLRIINDDK- 189 (356)
T ss_pred CCCCCCCCCCcCCCCCCCCCccCCHHHHHHHHHHHHHHHhhcCCCcceEEEecccccc-C-C--HHHHHHHHHHHhccc-
Confidence 4679999999998886543335999999997765322 3688999999 5532 1 1 456788888887532
Q ss_pred Cc-----EEEEecCCCCCChHHHHHHHHcCccc-ccccccchH-HHHHhhcC--CCCCHHHHHHHHHHHHHhCCCCceEE
Q 017179 208 NM-----LIEALVPDFRGNNGCVREVAKSGLNV-FAHNIETVE-ELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTK 278 (376)
Q Consensus 208 ~i-----~Ie~l~pd~~g~~e~l~~L~~aGld~-i~h~lEtv~-~l~~~vr~--r~~t~e~~L~vl~~ak~~~p~Gi~tk 278 (376)
++ ++.+.+-.+ ...+..+.+.+++. +...+++.+ ++++++.| ++++.++.++.++.+.+....-+.+.
T Consensus 190 g~~~s~r~itvsT~G~---~~~i~~l~d~~l~~~LaiSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~v~ie 266 (356)
T PRK14455 190 GLAIGARHITVSTSGI---APKIYDFADEGLQINLAISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRRVTFE 266 (356)
T ss_pred CcccCCCceEEEecCc---hHhHHHHHhcccCeeEEeccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 22 434444322 23566777877652 345677654 88887553 56788999999998766321114445
Q ss_pred EeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhh
Q 017179 279 TSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 279 t~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
.-+|=|+.++++|+.+..++++.+++ .|.+-+|. |.. ..+. +.+++++...+.++..+.|+..
T Consensus 267 y~lI~gvNDs~ed~~~La~ll~~l~~-~VnLIPyn-p~~-~~ky-~~ps~e~l~~f~~~L~~~gi~v 329 (356)
T PRK14455 267 YILLGGVNDQVEHAEELADLLKGIKC-HVNLIPVN-PVP-ERDY-VRTPKEDIFAFEDTLKKNGVNC 329 (356)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCC-cEEEEecC-cCC-CCCC-cCCCHHHHHHHHHHHHHCCCcE
Confidence 55666789999999999999999874 45554443 421 1121 2245677888888888888765
|
|
| >PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.8e-08 Score=97.10 Aligned_cols=203 Identities=13% Similarity=0.128 Sum_probs=131.8
Q ss_pred EeeeCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHHHC-C-----CcEEEEEe-eeCCCCCcccHHHHHHHHHHHHh
Q 017179 132 IMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW-G-----LDYVVITS-VDRDDLADQGSGHFAQTVRKLKE 204 (376)
Q Consensus 132 ~m~i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~~-G-----~~eIvLTs-g~r~dl~d~g~~~~~elvr~Ik~ 204 (376)
.+..+.+|+.+|.||.-....-...++++|+++.+..+... | ++.|+++| |+.-. . .+.+.+.++.+..
T Consensus 96 cvSsq~GC~l~C~fC~tg~~g~~r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~GmGEPll--n--~~~v~~~i~~l~~ 171 (343)
T PRK14468 96 CVSTMVGCPAGCAFCATGAMGFGRNLTAAEILDQVLAVAGHEGISPREIRNVVLMGMGEPLL--N--YENVLKAARIMLH 171 (343)
T ss_pred EEEecCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcCcCcCCccEEEEeccCcccc--C--HHHHHHHHHHhcc
Confidence 34468999999999986543212358999999887665443 2 67999998 66321 1 3445555555532
Q ss_pred hCC-Cc---EEEEecCCCCCChHHHHHHHHcCcc-cccccccchH-HHHHhhcC--CCCCHHHHHHHHHHHHHhCCCCce
Q 017179 205 LKP-NM---LIEALVPDFRGNNGCVREVAKSGLN-VFAHNIETVE-ELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTL 276 (376)
Q Consensus 205 ~~p-~i---~Ie~l~pd~~g~~e~l~~L~~aGld-~i~h~lEtv~-~l~~~vr~--r~~t~e~~L~vl~~ak~~~p~Gi~ 276 (376)
... ++ .|.+.+- |....++.|.+++++ .+...+.+.+ +.++++.| ++++.++.++.++...+....-+.
T Consensus 172 ~~g~~l~~r~itvST~---G~~~~i~~L~~~~l~~~LaiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~~~~~~~~~~V~ 248 (343)
T PRK14468 172 PQALAMSPRRVTLSTV---GIPKGIRRLAEEDLGVRLALSLHAPDEETRQRIIPTAHRYSIAEIMAAVRHYQAVTGRRVT 248 (343)
T ss_pred cccccccCceEEEECC---CChHHHHHHHHhCcCcEEEEEcCCCCHHHHHHhccccccCCHHHHHHHHHHHHHhcCCeEE
Confidence 210 11 3444442 235678889998887 3677777665 88988874 356889999999866554322244
Q ss_pred EEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhh
Q 017179 277 TKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 277 tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
+..-+|=|+-.++||+.+..++++++.+ .|.+-+|. |.. . .-.+.+++++.+.++++..+.|+..
T Consensus 249 ieyvLI~GvNDs~e~~~~L~~ll~~~~~-~VnLIPyn-p~~-~-~~~~~ps~e~i~~f~~~L~~~Gi~v 313 (343)
T PRK14468 249 LEYTMLKGVNDHLWQAELLADLLRGLVS-HVNLIPFN-PWE-G-SPFQSSPRAQILAFADVLERRGVPV 313 (343)
T ss_pred EEEEEeCCCcCCHHHHHHHHHHHhcCCc-EEEEEcCC-CCC-C-CCCCCCCHHHHHHHHHHHHHCCCeE
Confidence 5566666889999999999999999865 45555554 311 1 1122355677777777767667644
|
|
| >TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.1e-08 Score=99.31 Aligned_cols=185 Identities=18% Similarity=0.263 Sum_probs=118.3
Q ss_pred EEeeeCCccCCCCcCCCCCCCCC-CCCCCchhHHHHHHHHHH-CCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhC--
Q 017179 131 TIMILGDTCTRGCRFCNVKTSRA-PPPPDPDEPTNVAEAIAS-WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK-- 206 (376)
Q Consensus 131 t~m~i~d~C~~~C~FC~v~~~r~-~~~l~~eEi~~~a~al~~-~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~-- 206 (376)
+.++++++|+.+|+||.-..... ...++.+++.+.++.+.+ .|+++|+||||+.-..+| ..+.++++.+....
T Consensus 98 ~l~~~t~~Cn~~Cr~C~~~~~~~~~~~~~~~~~~~~i~~i~~~~~i~~VvltGGEPL~~~d---~~L~~ll~~l~~i~~~ 174 (321)
T TIGR03821 98 VLLIVTGGCAINCRYCFRRHFPYQENQPNKAQWKEALEYIAQHPEINEVILSGGDPLMAKD---HRLDWLLNLLEQIPHL 174 (321)
T ss_pred EEEEeCCCcCCcCcCCCCCCcCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCcccccCCc---hHHHHHHHHHHhCCCC
Confidence 45668999999999998654321 123566777777777774 489999999997433333 23556666665421
Q ss_pred CCcEEE----EecCCCCCChHHHHHHHHcCccccc-ccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceE--EE
Q 017179 207 PNMLIE----ALVPDFRGNNGCVREVAKSGLNVFA-HNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLT--KT 279 (376)
Q Consensus 207 p~i~Ie----~l~pd~~g~~e~l~~L~~aGld~i~-h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~t--kt 279 (376)
..+.|. ++.|... +++.++.|+++|...+. ..++..+++. +...+.++.+++ .|+.+ .|
T Consensus 175 ~~iri~tr~~~~~p~ri-t~el~~~L~~~~~~~~~~~h~dh~~Ei~----------d~~~~ai~~L~~---~Gi~v~~qt 240 (321)
T TIGR03821 175 KRLRIHTRLPVVIPDRI-TSGLCDLLANSRLQTVLVVHINHANEID----------AEVADALAKLRN---AGITLLNQS 240 (321)
T ss_pred cEEEEecCcceeeHHHh-hHHHHHHHHhcCCcEEEEeeCCChHhCc----------HHHHHHHHHHHH---cCCEEEecc
Confidence 234444 2444432 67888999999876653 2344434433 335568888888 46655 44
Q ss_pred eEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHH
Q 017179 280 SIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYR 335 (376)
Q Consensus 280 ~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~ 335 (376)
.++=|+-.+.+++.++++.+.++++.-..+++ +.|.. +..- -.+++++..++.
T Consensus 241 vllkgiNDn~~~l~~L~~~l~~~gv~pyyl~~-~~p~g-g~~~-f~v~~~~~~~i~ 293 (321)
T TIGR03821 241 VLLRGVNDNADTLAALSERLFDAGVLPYYLHL-LDKVQ-GAAH-FDVDDERARALM 293 (321)
T ss_pred eeeCCCCCCHHHHHHHHHHHHHcCCeeCcccc-cCCCC-Cccc-ccCCHHHHHHHH
Confidence 45557778999999999999999998777643 35643 2221 235555544443
|
Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc. |
| >PRK13762 tRNA-modifying enzyme; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.7e-08 Score=98.60 Aligned_cols=205 Identities=12% Similarity=0.160 Sum_probs=131.5
Q ss_pred CccCCCCcCCCCCCCCC--C-----CCCCchhHHHHHHHHHH---C---C--------------CcEEEEEeeeCCCCCc
Q 017179 137 DTCTRGCRFCNVKTSRA--P-----PPPDPDEPTNVAEAIAS---W---G--------------LDYVVITSVDRDDLAD 189 (376)
Q Consensus 137 d~C~~~C~FC~v~~~r~--~-----~~l~~eEi~~~a~al~~---~---G--------------~~eIvLTsg~r~dl~d 189 (376)
.+|+.+|.||.-+.... . ...+++||++.+..... . | .+++.|+++--|-+
T Consensus 66 ~~C~~rC~fC~r~~~~~~~~~~~~~~~~~peeiv~~~~~~~~~~i~g~~g~~~v~~~~~~ea~~~~~v~iSl~GEPlL-- 143 (322)
T PRK13762 66 AWCNQRCLFCWRPLEEDVGLELKEPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDREKFEEAMEPKHVAISLSGEPTL-- 143 (322)
T ss_pred HHHhccCceeeccCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCHHHhhhccCCCEEEEeCCccccc--
Confidence 46999999998764321 1 12577888777654321 1 3 35788885422222
Q ss_pred ccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcC--CCCCHHHHHHHHHH
Q 017179 190 QGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRD--HRANFKQSLDVLMM 266 (376)
Q Consensus 190 ~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~--r~~t~e~~L~vl~~ 266 (376)
..++.++++.+++. ++.+.+.+-.. .++.++.| ++++|.+...++..+ +.|++++. .+.+++..++.|+.
T Consensus 144 --~p~l~eli~~~k~~--Gi~~~L~TNG~--~~e~l~~L-~~~~d~i~VSLda~~~e~~~~i~~~~~~~~~~~vl~~L~~ 216 (322)
T PRK13762 144 --YPYLPELIEEFHKR--GFTTFLVTNGT--RPDVLEKL-EEEPTQLYVSLDAPDEETYKKINRPVIPDAWERILETLEL 216 (322)
T ss_pred --hhhHHHHHHHHHHc--CCCEEEECCCC--CHHHHHHH-HhcCCEEEEEccCCCHHHHHHHhCCCCCCcHHHHHHHHHH
Confidence 12588999999875 46666656443 36788888 788999999999765 89999973 24689999999999
Q ss_pred HHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCC--CCCCcccCChHHHHHHHHHHHHH-hh
Q 017179 267 AKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKR--HMPVSEYITPEAFERYRALGMEM-GF 343 (376)
Q Consensus 267 ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~--~~~v~~~v~pe~~~~l~~~a~~~-gf 343 (376)
+++..-. +.+.+.++- |.++.+..+..+++++++++.|-+-+|+.-+.. .+.....+++++...+.+...+. |+
T Consensus 217 l~~~~~~-~~ir~tlv~--g~Nd~e~~~~a~l~~~~~~~~Iel~~y~~~G~~k~~l~~~~~p~~eev~~~~~~l~~~~~~ 293 (322)
T PRK13762 217 LPSKKTR-TVIRITLVK--GYNMHDPEGFAKLIERANPDFVEVKAYMHVGYSRNRLTRDNMPSHEEVREFAKELAEYTGY 293 (322)
T ss_pred HHhCCCC-EEEEEEEEC--CcCccHHHHHHHHHHHcCCCEEEEECCeECCCccccccccCCcCHHHHHHHHHHHHHhcCC
Confidence 9985211 334544444 455555558888899999999988777522211 12223345666666665554444 55
Q ss_pred hhhccchhHh
Q 017179 344 RYVASGPMVR 353 (376)
Q Consensus 344 ~~~~sgp~vr 353 (376)
..+...|..|
T Consensus 294 ~i~~~~~~s~ 303 (322)
T PRK13762 294 EILDESEPSR 303 (322)
T ss_pred eEEecCCCce
Confidence 5444444443
|
|
| >PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.9e-08 Score=96.52 Aligned_cols=200 Identities=16% Similarity=0.165 Sum_probs=133.5
Q ss_pred eCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHH---H-HC--C---CcEEEEEe-eeCCCCCcccHHHHHHHHHHHHh
Q 017179 135 LGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAI---A-SW--G---LDYVVITS-VDRDDLADQGSGHFAQTVRKLKE 204 (376)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al---~-~~--G---~~eIvLTs-g~r~dl~d~g~~~~~elvr~Ik~ 204 (376)
-+.+|+.+|.||+-....-...++++||++.+... . .. | ++.|+++| |+.- + . .+.+.+.++.+++
T Consensus 108 sq~GC~~~C~FC~tg~~g~~rnlt~~EI~~qv~~~~~~~~~~g~g~~~i~nIvfmGmGEPL-l-n--~~~v~~~l~~l~~ 183 (354)
T PRK14460 108 CQVGCAMGCTFCSTGTMGFERNMTMGEILGQVLVAREHLGDNGPDHPILRNLVFMGMGEPL-L-N--LDEVMRSLRTLNN 183 (354)
T ss_pred CCCCcCCCCccCCCCCCCCCcCCCHHHHHHHHHHHHHHHhhccCCCcceeEEEEecCCccc-C-C--HHHHHHHHHHHhh
Confidence 47899999999975543212248999999988433 2 22 3 78999999 5532 1 1 4556677777765
Q ss_pred hC----CCcEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCC--CCCHHHHHHHHHHHHHhCCCCceE
Q 017179 205 LK----PNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDH--RANFKQSLDVLMMAKDYVPAGTLT 277 (376)
Q Consensus 205 ~~----p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r--~~t~e~~L~vl~~ak~~~p~Gi~t 277 (376)
.. +...+.+.+-. ..+.++.|.++|+..++..+++.+ +.++++.|. +++.++.++.++.........+.+
T Consensus 184 ~~Gl~~~~r~itvsT~G---~~~~i~~L~~~~l~~L~iSLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~~v~i 260 (354)
T PRK14460 184 EKGLNFSPRRITVSTCG---IEKGLRELGESGLAFLAVSLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTRERVTF 260 (354)
T ss_pred hhccCCCCCeEEEECCC---ChHHHHHHHhCCCcEEEEeCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcCCeEEE
Confidence 32 11245555533 357788999999877888888765 999998743 367888888776543322222555
Q ss_pred EEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhh
Q 017179 278 KTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 278 kt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
..-+|=|+.++++|+.+..++++.+++ .|.+-+|- |. .+.+. +.+.+++.+.+.++..+.|+..
T Consensus 261 ey~LI~GvNDs~ed~~~l~~~l~~~~~-~VnLIpyn-~~-~g~~y-~~p~~e~v~~f~~~l~~~Gi~v 324 (354)
T PRK14460 261 EYLLLGGVNDSLEHARELVRLLSRTKC-KLNLIVYN-PA-EGLPY-SAPTEERILAFEKYLWSKGITA 324 (354)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCC-cEEEEcCC-CC-CCCCC-CCCCHHHHHHHHHHHHHCCCeE
Confidence 666777889999999999999999875 35554553 31 23332 2355677888888877777644
|
|
| >PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1e-07 Score=95.17 Aligned_cols=204 Identities=10% Similarity=0.043 Sum_probs=134.1
Q ss_pred EEeeeCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHHHC-CCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHhhCC-
Q 017179 131 TIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW-GLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELKP- 207 (376)
Q Consensus 131 t~m~i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~~-G~~eIvLTs-g~r~dl~d~g~~~~~elvr~Ik~~~p- 207 (376)
-.+-.+.||+.+|.||.-........++.+||+..+..+.+. +++.|+++| |+.- .. .+.+.+.++.++....
T Consensus 105 ~cvSsQvGC~~~C~FC~Tg~~g~~rnLt~~EIl~Qv~~~~~~~~i~nIvfmGmGEPL--~N--~d~vi~al~~l~~~~g~ 180 (345)
T PRK14466 105 LCVSSQVGCKMNCLFCMTGKQGFTGNLTAAQILNQIYSLPERDKLTNLVFMGMGEPL--DN--LDEVLKALEILTAPYGY 180 (345)
T ss_pred EEEEcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhhhhcCCCCeEEEeeeCcCc--cc--HHHHHHHHHHHhhcccc
Confidence 344457899999999986653222348999999998877543 689999999 7642 11 3455666666654321
Q ss_pred ---CcEEEEecCCCCCChHHHHHHHHcCcccccccccch-HHHHHhhcC--CCCCHHHHHHHHHHHHHhCCCCceEEEeE
Q 017179 208 ---NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKTSI 281 (376)
Q Consensus 208 ---~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~--r~~t~e~~L~vl~~ak~~~p~Gi~tkt~i 281 (376)
...|.+.+-. ....+..+.+...-.++..+.+. +++++++.| ++++.++.++.++...+....-+.+.--+
T Consensus 181 ~~s~r~ItVsT~G---~~~~i~~l~~~~~~~LavSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~L 257 (345)
T PRK14466 181 GWSPKRITVSTVG---LKKGLKRFLEESECHLAISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIV 257 (345)
T ss_pred CcCCceEEEEcCC---CchHHHHHhhccCcEEEEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEE
Confidence 1255555533 23335555554333445667755 499999886 45778999999988655433224555666
Q ss_pred EEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhh
Q 017179 282 MLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 282 mvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
|=|+-.++||..+..+.++.++ ..|++-+|- |. .+.+ .+.+..++.+.+.++-.+.|+..
T Consensus 258 i~gvND~~e~a~~L~~ll~~~~-~~VNLIp~N-p~-~~~~-~~~~s~~~~~~F~~~L~~~gi~~ 317 (345)
T PRK14466 258 FKGLNDSLKHAKELVKLLRGID-CRVNLIRFH-AI-PGVD-LEGSDMARMEAFRDYLTSHGVFT 317 (345)
T ss_pred eCCCCCCHHHHHHHHHHHcCCC-ceEEEEecC-CC-CCCC-CcCCCHHHHHHHHHHHHHCCCcE
Confidence 6688999999999999999887 456666664 31 1222 23355677888888777777643
|
|
| >PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-07 Score=95.04 Aligned_cols=204 Identities=11% Similarity=0.138 Sum_probs=134.4
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHHHC---CCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHh
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW---GLDYVVITS-VDRDDLADQGSGHFAQTVRKLKE 204 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~~---G~~eIvLTs-g~r~dl~d~g~~~~~elvr~Ik~ 204 (376)
+..++.-+-||+.+|.||.-....-...++++||+..+..+.+. +++.|+++| |+.-. . .+.+.+.++.++.
T Consensus 101 ~t~cvSsqvGC~~~C~FC~tg~~g~~rnlt~~EIv~qv~~~~~~~~~~~~~IvfmGmGEPll--n--~~~v~~~i~~l~~ 176 (345)
T PRK14457 101 LTVCVSSQVGCPMACDFCATGKGGLKRSLKAHEIVDQVLTVQEDMQRRVSHVVFMGMGEPLL--N--IDEVLAAIRCLNQ 176 (345)
T ss_pred CEEEEeCCCCCCCcCCcCCCCCCCCccccCHHHHHHHHHHHHHHhcCCCCEEEEEecCcccc--C--HHHHHHHHHHHhc
Confidence 34455556799999999976653212248999999988776542 589999999 76321 1 3446666666654
Q ss_pred hCCCc---EEEEecCCCCCChHHHHHHHHcC------cc-cccccccch-HHHHHhhcC--CCCCHHHHHHHHHH-HHHh
Q 017179 205 LKPNM---LIEALVPDFRGNNGCVREVAKSG------LN-VFAHNIETV-EELQSAVRD--HRANFKQSLDVLMM-AKDY 270 (376)
Q Consensus 205 ~~p~i---~Ie~l~pd~~g~~e~l~~L~~aG------ld-~i~h~lEtv-~~l~~~vr~--r~~t~e~~L~vl~~-ak~~ 270 (376)
.. ++ .|.+++- |..+.+..|.+.+ ++ .+...+... +++++++.| +++..++.++.++. +.+.
T Consensus 177 ~~-~i~~r~itvST~---G~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~ 252 (345)
T PRK14457 177 DL-GIGQRRITVSTV---GVPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAIT 252 (345)
T ss_pred cc-CCccCceEEECC---CchhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHh
Confidence 32 33 5555552 2455688888776 23 245556655 488988875 46778888866655 4442
Q ss_pred CCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhh
Q 017179 271 VPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 271 ~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
+.-+.+..-+|=|+-.++|++.++.++++.+++ .|.+-+| .|. ...+. +.+++++.+.+.++..+.|+..
T Consensus 253 -gr~I~iey~LIpGvNDs~e~a~~La~~l~~l~~-~VnLIPy-np~-~~~~~-~~ps~e~i~~f~~~L~~~Gi~v 322 (345)
T PRK14457 253 -GRRVSFEYILLGGVNDLPEHAEELANLLRGFQS-HVNLIPY-NPI-DEVEF-QRPSPKRIQAFQRVLEQRGVAV 322 (345)
T ss_pred -CCEEEEEEEEECCcCCCHHHHHHHHHHHhcCCC-eEEEecC-CCC-CCCCC-CCCCHHHHHHHHHHHHHCCCeE
Confidence 222667788888999999999999999999876 4665555 231 11222 2345677888888877777754
|
|
| >TIGR00238 KamA family protein | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.7e-08 Score=99.02 Aligned_cols=170 Identities=12% Similarity=0.166 Sum_probs=113.8
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCC-CCCCchhHHHHHHHHHH-CCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhC
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIAS-WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK 206 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~-~~l~~eEi~~~a~al~~-~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~ 206 (376)
...++.++++|+.+|+||..+..... .....+++.+.++.+.+ .|+++|+||||+.-.++| ..+.++++.|++..
T Consensus 113 ~rvll~~T~gCn~~C~yC~~~~~~~~~~~~~~~~~~~~i~~i~~~~~i~eV~lsGGDPLl~~d---~~L~~ll~~L~~i~ 189 (331)
T TIGR00238 113 NRALFLVKGGCAVNCRYCFRRHFPYKENPGNKKKWQKALDYIAEHPEIIEILISGGDPLMAKD---HELEWLLKRLEEIP 189 (331)
T ss_pred CcEEEEeCCCCCCCCcCCCCCCcCCCCCCccHHHHHHHHHHHHhCCCcCEEEEECCccccCCH---HHHHHHHHHHHhcC
Confidence 34467789999999999987543221 12236778887777764 589999999998544443 34777788877642
Q ss_pred --CCcEEEEecCCCC---CChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCc--eEE
Q 017179 207 --PNMLIEALVPDFR---GNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGT--LTK 278 (376)
Q Consensus 207 --p~i~Ie~l~pd~~---g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi--~tk 278 (376)
..+++..-+|... -+++.++.|+++|+..+-..+...+ ++ .++..+.++.+++ .|+ .+.
T Consensus 190 ~~~~IRi~tr~~~~~P~rit~el~~~L~~~~~~~~~vsh~nh~~Ei----------~~~~~~ai~~L~~---aGi~v~~q 256 (331)
T TIGR00238 190 HLVRLRIGTRLPVVIPQRITDELCELLASFELQLMLVTHINHCNEI----------TEEFAEAMKKLRT---VNVTLLNQ 256 (331)
T ss_pred CccEEEeecCCCccCchhcCHHHHHHHHhcCCcEEEEccCCChHhC----------CHHHHHHHHHHHH---cCCEEEee
Confidence 1244544444321 1688889999988776544333221 22 2556678888877 455 456
Q ss_pred EeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCC
Q 017179 279 TSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRP 315 (376)
Q Consensus 279 t~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P 315 (376)
+.++=|.-.+.+++.++++.+.++++.-..+++ +.|
T Consensus 257 tvLl~gvnD~~~~l~~L~~~l~~~gV~pyyl~~-~~~ 292 (331)
T TIGR00238 257 SVLLRGVNDRAQILAKLSIALFKVGIIPYYLHY-LDK 292 (331)
T ss_pred cceECCcCCCHHHHHHHHHHHhhcCeecCeecC-cCC
Confidence 777778888888999999999999987666643 345
|
Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein. |
| >PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.2e-07 Score=94.46 Aligned_cols=191 Identities=9% Similarity=0.006 Sum_probs=129.5
Q ss_pred eCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHHHC---CCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHhh----C
Q 017179 135 LGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW---GLDYVVITS-VDRDDLADQGSGHFAQTVRKLKEL----K 206 (376)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~~---G~~eIvLTs-g~r~dl~d~g~~~~~elvr~Ik~~----~ 206 (376)
-+.+|+.+|.||......-...++.+|++..+..+.+. .++.|+++| |+.-.- .+.+.+.++.++.. .
T Consensus 103 sq~GC~l~C~fC~tg~~g~~r~l~~~EI~~qi~~~~~~~~~~i~nIvfmGmGEPllN----~d~v~~~i~~l~~~~~~~~ 178 (336)
T PRK14470 103 SQAGCALGCAFCATGKLGLDRSLRSWEIVAQLLAVRADSERPITGVVFMGQGEPFLN----YDEVLRAAYALCDPAGARI 178 (336)
T ss_pred CCCCcCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEEecCccccC----HHHHHHHHHHHhCcccccc
Confidence 46799999999987753222247888888777665432 579999999 764221 23466677777643 2
Q ss_pred CCcEEEEecCCCCCChHHHHHHHHcCc-ccccccccchH-HHHHhhcCC--CCCHHHHHHHHHHHHHhCCCCceEEEeEE
Q 017179 207 PNMLIEALVPDFRGNNGCVREVAKSGL-NVFAHNIETVE-ELQSAVRDH--RANFKQSLDVLMMAKDYVPAGTLTKTSIM 282 (376)
Q Consensus 207 p~i~Ie~l~pd~~g~~e~l~~L~~aGl-d~i~h~lEtv~-~l~~~vr~r--~~t~e~~L~vl~~ak~~~p~Gi~tkt~im 282 (376)
+...|.+.|-.. ...+..+.+.++ +.+...+++.+ +.+.++.|. +++.++.++.++...+.. .-+.+.--+|
T Consensus 179 ~~~~ItVsTnG~---~p~i~~l~~~~~~~~LaiSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~~~-rri~ieyvLI 254 (336)
T PRK14470 179 DGRRISISTAGV---VPMIRRYTAEGHKFRLCISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAALR-GRVTLEYVMI 254 (336)
T ss_pred CCCceEEEecCC---hHHHHHHHhcCCCceEEEecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhC-CCeEEEEEEE
Confidence 345666666432 345677777776 66888888765 888888643 578999999999988762 2245566677
Q ss_pred EecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHH
Q 017179 283 LGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALG 338 (376)
Q Consensus 283 vGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a 338 (376)
-|+..+++|+.+..++++.+.+.+ .+-+|-.| . + .+ +.++.++.+.+.++-
T Consensus 255 ~GvNDseeda~~La~llk~l~~~v-nlI~~N~~-~-~-~~-~~p~~~~i~~f~~~l 305 (336)
T PRK14470 255 SGVNVGEEDAAALGRLLAGIPVRL-NPIAVNDA-T-G-RY-RPPDEDEWNAFRDAL 305 (336)
T ss_pred ecccCCHHHHHHHHHHHhcCCCeE-EEeccCCC-C-C-Cc-cCCCHHHHHHHHHHH
Confidence 788999999999999999887643 33355433 2 2 22 224456666666665
|
|
| >PRK13758 anaerobic sulfatase-maturase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.2e-07 Score=93.07 Aligned_cols=193 Identities=9% Similarity=0.112 Sum_probs=125.4
Q ss_pred EeeeCCccCCCCcCCCCCCCC-C-----CCCCCchhHHHHHHHHHHC--CCcEEEEEeeeCCCCCcccHHHHHHHHHHHH
Q 017179 132 IMILGDTCTRGCRFCNVKTSR-A-----PPPPDPDEPTNVAEAIASW--GLDYVVITSVDRDDLADQGSGHFAQTVRKLK 203 (376)
Q Consensus 132 ~m~i~d~C~~~C~FC~v~~~r-~-----~~~l~~eEi~~~a~al~~~--G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik 203 (376)
++..++.|+.+|.||...... . ...++.+.+...++.+.+. +...|.+|||+.--.+ .+.+.++++.++
T Consensus 8 ~~~~t~~CNl~C~yC~~~~~~~~~~~~~~~~m~~~~~~~~i~~~~~~~~~~~~i~~~GGEPll~~---~~~~~~~~~~~~ 84 (370)
T PRK13758 8 IKPASSGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMVKRVLNEAEGHCSFAFQGGEPTLAG---LEFFEELMELQR 84 (370)
T ss_pred EecCCCCcCCCCcccCCcCccccccccccCCCCHHHHHHHHHHHHhccCCceEEEEECCccccCC---hHHHHHHHHHHH
Confidence 334458999999999876421 1 1237777777777765554 4467899999632111 234567777776
Q ss_pred hhC-CCcE--EEEecCCCCCChHHHHHHHHcCcccccccccchHHHHHhhcC---CCCCHHHHHHHHHHHHHhCCCCceE
Q 017179 204 ELK-PNML--IEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRD---HRANFKQSLDVLMMAKDYVPAGTLT 277 (376)
Q Consensus 204 ~~~-p~i~--Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~---r~~t~e~~L~vl~~ak~~~p~Gi~t 277 (376)
+.. .++. +.+.|--..-+++.++.|.+.++ .+...+|..++++..+|. .+.+|+..++.|+.+++. |+.+
T Consensus 85 ~~~~~~~~~~~~i~TNG~ll~~~~~~~l~~~~~-~v~iSlDg~~~~hd~~R~~~~g~~~f~~v~~~i~~l~~~---~~~~ 160 (370)
T PRK13758 85 KHNYKNLKIYNSLQTNGTLIDESWAKFLSENKF-LVGLSMDGPKEIHNLNRKDCCGLDTFSKVERAAELFKKY---KVEF 160 (370)
T ss_pred HhccCCCeEEEEEEecCEecCHHHHHHHHHcCc-eEEEeecCCHHHhccccCCCCCCccHHHHHHHHHHHHHh---CCCc
Confidence 652 2232 34445332226788899988885 788889987777777762 357899999999999984 4555
Q ss_pred EEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcc-cCChHHHH
Q 017179 278 KTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSE-YITPEAFE 332 (376)
Q Consensus 278 kt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~-~v~pe~~~ 332 (376)
...+++.- .+.+++.+.++++++++++.+.+...+.|...+..... .+.|+.+.
T Consensus 161 ~i~~~v~~-~n~~~l~~i~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~ 215 (370)
T PRK13758 161 NILCVVTS-NTARHVNKIYKYFKEKDFKFLQFINCLDPLYEEKGKYNYSLKPKDYT 215 (370)
T ss_pred eEEEEecc-ccccCHHHHHHHHHHcCCCeEeeeeccCccccccCCCcCccCHHHHH
Confidence 55555554 46778888999999999988766444445332322222 24565443
|
|
| >COG2100 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.5e-08 Score=94.50 Aligned_cols=200 Identities=21% Similarity=0.269 Sum_probs=135.9
Q ss_pred CCccCCCCcCCCCCCC---CCCC---CCCchhHHHHHHHHHHC--CCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCC
Q 017179 136 GDTCTRGCRFCNVKTS---RAPP---PPDPDEPTNVAEAIASW--GLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (376)
Q Consensus 136 ~d~C~~~C~FC~v~~~---r~~~---~l~~eEi~~~a~al~~~--G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p 207 (376)
+.+|+.+|-||++..+ |... -.++|-+++-.+.+++. +.=|++|-|+--+-+ .-|+.++|+++++. |
T Consensus 114 ~tgCnlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEaHlDGqGEP~l----YP~l~~lVqalk~~-~ 188 (414)
T COG2100 114 STGCNLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEAHLDGQGEPLL----YPHLVDLVQALKEH-K 188 (414)
T ss_pred CccccceeEEEeccCCcccceeccceEecHHHHHHHHHHHHhhhCCCeEEEecCCCCCcc----chhHHHHHHHHhcC-C
Confidence 5699999999998753 2111 26888777777666654 235888888754433 24789999999886 4
Q ss_pred Cc-EEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcC-CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEe
Q 017179 208 NM-LIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRD-HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG 284 (376)
Q Consensus 208 ~i-~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~-r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvG 284 (376)
++ .|..-+-...-+.+.+++|.+||+|.+|.+++..| ++-+.+.+ +.++.+..+++.+.+.+ .|+.+-..=++=
T Consensus 189 ~v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~---a~idvlIaPv~l 265 (414)
T COG2100 189 GVEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIAN---AGIDVLIAPVWL 265 (414)
T ss_pred CceEEEEeeCceeccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHh---CCCCEEEeeeec
Confidence 54 33333322222789999999999999999999876 66666553 25788999999999988 455544444444
Q ss_pred cCCCHHHHHHHHHHHHHcCC----cEEEeecCCCCCCCCC-CC-cccCChHHH-HHHHHHHHHHhhh
Q 017179 285 CGETPDQVVSTMEKVRAAGV----DVMTFGQYMRPSKRHM-PV-SEYITPEAF-ERYRALGMEMGFR 344 (376)
Q Consensus 285 lGET~ee~~e~L~~Lrel~v----d~v~~~qY~~P~~~~~-~v-~~~v~pe~~-~~l~~~a~~~gf~ 344 (376)
.|-+|+|+...+.+.++++. -.+++ |-+.|.+.+- |+ .+-++=.+| ..|+++-.+.|.+
T Consensus 266 PG~ND~E~~~iIe~A~~iGaGkk~p~lgi-Qkyipyk~GRkp~~~k~~~fkeFYrwLrelEketg~k 331 (414)
T COG2100 266 PGVNDDEMPKIIEWAREIGAGKKWPPLGI-QKYIPYKFGRKPVIAKVWPFKEFYRWLRELEKETGVK 331 (414)
T ss_pred CCcChHHHHHHHHHHHHhCCCCCCCCcce-EEeeeecccCCccccccCcHHHHHHHHHHHHHHhCCC
Confidence 58899999999999999986 24555 4444643332 22 222222444 4557777788877
|
|
| >PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.3e-07 Score=91.62 Aligned_cols=201 Identities=15% Similarity=0.161 Sum_probs=132.1
Q ss_pred eCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHHH---C------C--CcEEEEEe-eeCCCCCcccHHHHHHHHHHH
Q 017179 135 LGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIAS---W------G--LDYVVITS-VDRDDLADQGSGHFAQTVRKL 202 (376)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~---~------G--~~eIvLTs-g~r~dl~d~g~~~~~elvr~I 202 (376)
.+.||+.+|.||+-....-...++++||+..+..+.+ . | ++.|++.| |+.-+ ..+.+.+.++.|
T Consensus 127 sQvGC~m~C~FCatg~~g~~RnLt~~EIv~Qv~~~~~~~~~~~~~~~~~~i~nVvfmGmGEPLl----N~d~V~~~i~~l 202 (373)
T PRK14459 127 SQAGCGMACPFCATGQGGLTRNLSTAEIVEQVRAAARALRDGEVPGGPGRLSNVVFMGMGEPLA----NYKRVVAAVRRI 202 (373)
T ss_pred ecCCCCCcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHhhhcccccCCCceeEEEEecCCcchh----hHHHHHHHHHHH
Confidence 4789999999998554221224999999998876642 1 2 67899999 65321 134577777777
Q ss_pred HhhCC---Cc---EEEEecCCCCCChHHHHHHHHcCcc-cccccccchH-HHHHhhcC--CCCCHHHHHHHHHHHHHhCC
Q 017179 203 KELKP---NM---LIEALVPDFRGNNGCVREVAKSGLN-VFAHNIETVE-ELQSAVRD--HRANFKQSLDVLMMAKDYVP 272 (376)
Q Consensus 203 k~~~p---~i---~Ie~l~pd~~g~~e~l~~L~~aGld-~i~h~lEtv~-~l~~~vr~--r~~t~e~~L~vl~~ak~~~p 272 (376)
++..| ++ +|.+.+-.+ ...+..|.+.+++ .++..+.+.+ ++++++.| ++++.++.++.++...+...
T Consensus 203 ~~~~~~g~gis~r~ITvST~Gl---~~~i~~la~~~l~~~LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~g 279 (373)
T PRK14459 203 TAPAPEGLGISARNVTVSTVGL---VPAIRKLADEGLPVTLAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATG 279 (373)
T ss_pred hCcccccCCccCCEEEEECcCc---hhHHHHHHHhcCCeEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhC
Confidence 66211 23 555554322 3567889998887 5677777765 99999885 46889999999766654321
Q ss_pred CCceEEEeEEEecCCCHHHHHHHHHHHHHcC--CcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhh
Q 017179 273 AGTLTKTSIMLGCGETPDQVVSTMEKVRAAG--VDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 273 ~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~--vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
.-+.+.--+|=|+-.+++|..+..++++.++ ...|.+-+|- |. .+.+. +....+..+.+.++-.+.|+..
T Consensus 280 rrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIpyN-p~-~~~~y-~~~~~~~~~~F~~~L~~~gi~~ 351 (373)
T PRK14459 280 RRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIPLN-PT-PGSKW-TASPPEVEREFVRRLRAAGVPC 351 (373)
T ss_pred CEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEccC-CC-CCCCC-cCCCHHHHHHHHHHHHHCCCeE
Confidence 1134455566688999999999999999884 3456665664 31 12221 2234466777777767777644
|
|
| >TIGR00048 radical SAM enzyme, Cfr family | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.5e-07 Score=89.51 Aligned_cols=200 Identities=14% Similarity=0.151 Sum_probs=129.6
Q ss_pred eCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHHH------CCCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHhhCC
Q 017179 135 LGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIAS------WGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELKP 207 (376)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~------~G~~eIvLTs-g~r~dl~d~g~~~~~elvr~Ik~~~p 207 (376)
-+.+|+.+|.||+.....-...++.+|+++.+..+.. .+++.|++.| |+.- + ..+.+.+.++.+++...
T Consensus 111 sQ~GC~l~C~fC~t~~~g~~r~lt~~Eiv~qv~~~~~~~~~~~~~v~nVvfmGmGEPL-l---n~d~v~~~l~~l~~~~g 186 (355)
T TIGR00048 111 SQVGCALGCTFCATAKGGFNRNLEASEIIGQVLRVQKINNETGERVSNVVFMGMGEPL-L---NLNEVVKAMEIMNDDFG 186 (355)
T ss_pred cCCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCeeEEEEecCCchh-h---CHHHHHHHHHHhhcccc
Confidence 4678999999998765322234899999987655432 2478899999 6532 1 13456677777764321
Q ss_pred -Cc---EEEEecCCCCCChHHHHHHHHcCccc-ccccccchH-HHHHhhcC--CCCCHHHHHHHHHHHHHhCCCCceEEE
Q 017179 208 -NM---LIEALVPDFRGNNGCVREVAKSGLNV-FAHNIETVE-ELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKT 279 (376)
Q Consensus 208 -~i---~Ie~l~pd~~g~~e~l~~L~~aGld~-i~h~lEtv~-~l~~~vr~--r~~t~e~~L~vl~~ak~~~p~Gi~tkt 279 (376)
++ ++.+.+-. ....+..|.+.+++. +...+...+ +.++++.| +++++++.++.++...+..+.-+.+..
T Consensus 187 ~~i~~~~itisT~G---~~~~i~~l~~~~l~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~Vtiey 263 (355)
T TIGR00048 187 LGISKRRITISTSG---VVPKIDILADKMLQVALAISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEY 263 (355)
T ss_pred cCcCCCeEEEECCC---chHHHHHHHHhCCCcEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEE
Confidence 23 55555533 346788898888884 567777665 88888753 457789999888755443222244455
Q ss_pred eEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhh
Q 017179 280 SIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 280 ~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
-+|=|+-.+++|+.+..++++.+++ .|.+-+|- |. ...+.. .+.+++.+.++++-.+.|+..
T Consensus 264 vLI~GvNDs~e~a~~La~llk~l~~-~VnLIPyn-p~-~~~~~~-~ps~e~i~~f~~~L~~~gi~v 325 (355)
T TIGR00048 264 VLLDGVNDQVEHAEELAELLKGTKC-KVNLIPWN-PF-PEADYE-RPSNEQIDRFAKTLMSYGFTV 325 (355)
T ss_pred EEECCCCCCHHHHHHHHHHHhcCCC-ceEEEecc-cC-CCCCCC-CCCHHHHHHHHHHHHHCCCeE
Confidence 5666888899999999999999875 34443442 31 122221 245677777887777777755
|
A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains. |
| >PRK14453 chloramphenicol/florfenicol resistance protein; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.5e-06 Score=87.11 Aligned_cols=201 Identities=11% Similarity=0.109 Sum_probs=126.4
Q ss_pred eCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHHHCC--CcEEEEEe-eeCCCCCcccHHHHHHHHHHHHhhC-CC--
Q 017179 135 LGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWG--LDYVVITS-VDRDDLADQGSGHFAQTVRKLKELK-PN-- 208 (376)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~~G--~~eIvLTs-g~r~dl~d~g~~~~~elvr~Ik~~~-p~-- 208 (376)
-+.||+.+|.||+.....-...++.+||++.+..+...| ++.|+++| |+.-.-. .+.+.|+.|++.. .+
T Consensus 106 sqvGC~~~C~FC~tg~~g~~rnLt~~EIv~qv~~~~~~~~~i~~IvfmGmGEPLln~-----~v~~~i~~l~~~~~~~~~ 180 (347)
T PRK14453 106 SQCGCGFGCRFCATGSIGLKRNLTADEITDQLLYFYLNGHRLDSISFMGMGEALANP-----ELFDALKILTDPNLFGLS 180 (347)
T ss_pred cCCCcCCCCCCCCCCCCCCcccCCHHHHHHHHHHHHhcCCCcceEEEeecCCccCCH-----HHHHHHHHHhcccccCCC
Confidence 478999999999887643223599999999988776665 89999999 7643221 2666676666522 11
Q ss_pred -cEEEEecCCCCCChHHHHHHHHcCcccccc--cccch-HHHHHhhcC--CCCCHHHHHHHHHHHHHhCCCCceEEEeEE
Q 017179 209 -MLIEALVPDFRGNNGCVREVAKSGLNVFAH--NIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKTSIM 282 (376)
Q Consensus 209 -i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h--~lEtv-~~l~~~vr~--r~~t~e~~L~vl~~ak~~~p~Gi~tkt~im 282 (376)
-.|.+.+-.+. ..++.+.+.... ++. .+.+. ++...++.| +++..++.++.++........-+.+..-+|
T Consensus 181 ~r~itVsT~G~~---~~i~~l~~~~~~-v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~~V~iry~LI 256 (347)
T PRK14453 181 QRRITISTIGII---PGIQRLTQEFPQ-VNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGRKVYIAYIML 256 (347)
T ss_pred CCcEEEECCCCc---hhHHHHHhhccC-cCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEEeE
Confidence 23455554331 224555444222 333 34443 366666553 356667776666555443222266788888
Q ss_pred EecCCCHHHHHHHHHHHHHcC----CcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhh
Q 017179 283 LGCGETPDQVVSTMEKVRAAG----VDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 283 vGlGET~ee~~e~L~~Lrel~----vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
=|+-.+++|+.+..++++.++ +..|.+-+|. |......-.+.+..++.+.+.++..+.|+..
T Consensus 257 ~GvNDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn-~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~v 322 (347)
T PRK14453 257 EGVNDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYN-STDKTPFKFQSSSAGQIKQFCSTLKSAGISV 322 (347)
T ss_pred CCCCCCHHHHHHHHHHHhhccccCCcceEEEecCC-CCCCCCccCCCCCHHHHHHHHHHHHHCCCcE
Confidence 899999999999999999873 4567776664 3211110123355677888888888888754
|
|
| >TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.6e-07 Score=90.55 Aligned_cols=180 Identities=19% Similarity=0.251 Sum_probs=120.5
Q ss_pred hhhhhhhcCCCCcccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCCC--CCCCCchhHHHHHHHHHH-CCCcEEEEE
Q 017179 104 LHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRA--PPPPDPDEPTNVAEAIAS-WGLDYVVIT 180 (376)
Q Consensus 104 L~tvce~A~cpn~~ec~~~~~~~~~tat~m~i~d~C~~~C~FC~v~~~r~--~~~l~~eEi~~~a~al~~-~G~~eIvLT 180 (376)
..-++|+...|--+- -|-+.....+.+++.|+..|+||..+...+ ...++.+++.+.++.+++ .++++|+||
T Consensus 88 ~Dpl~E~~~spvpGl-----~HrYp~rvLl~vT~~C~~~CryC~R~~~~g~~~~~ls~eei~~~i~yI~~~p~I~~VlLS 162 (417)
T TIGR03820 88 EDPLAEDEDSPVPGI-----THRYPDRVLFLVSNTCAMYCRHCTRKRKVGDRDSIPSKEQILEGIEYIRNTPQIRDVLLS 162 (417)
T ss_pred cCcccccccCCCCCc-----eeccCCEEEEEEcCCcCCCCcCCCCcccCCcccccCCHHHHHHHHHHHHhcCCCCEEEEe
Confidence 345566655553321 122334455567999999999998765211 124788999998888887 499999999
Q ss_pred eeeCCCCCcccHHHHHHHHHHHHhhCCCc---EEEEecCCCC---CChHHHHHHHHcCcccccccccchHHHHHhhcCCC
Q 017179 181 SVDRDDLADQGSGHFAQTVRKLKELKPNM---LIEALVPDFR---GNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHR 254 (376)
Q Consensus 181 sg~r~dl~d~g~~~~~elvr~Ik~~~p~i---~Ie~l~pd~~---g~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~ 254 (376)
|||.--++| ..+..+++.|++. |++ +|..-+|.+. -+++.++.|++.+...+...+...+++
T Consensus 163 GGDPLll~d---~~L~~iL~~L~~I-phV~~IRI~TR~pvv~P~RIT~ell~~Lk~~~~~~v~~h~nhp~Ei-------- 230 (417)
T TIGR03820 163 GGDPLLLSD---DYLDWILTELRAI-PHVEVIRIGTRVPVVLPQRITDELVAILKKHHPVWLNTHFNHPREI-------- 230 (417)
T ss_pred CCccccCCh---HHHHHHHHHHhhc-CCCceEEEeeccccccccccCHHHHHHHHhcCCeEEEEeCCChHhC--------
Confidence 998544444 3344556777653 444 3433333322 168899999999865554444433333
Q ss_pred CCHHHHHHHHHHHHHhCCCCceE--EEeEEEecCCCHHHHHHHHHHHHHcCCc
Q 017179 255 ANFKQSLDVLMMAKDYVPAGTLT--KTSIMLGCGETPDQVVSTMEKVRAAGVD 305 (376)
Q Consensus 255 ~t~e~~L~vl~~ak~~~p~Gi~t--kt~imvGlGET~ee~~e~L~~Lrel~vd 305 (376)
.++..+.++.+++ .|+.+ .|-++=|.-.+.+-+.++++.|.+++|.
T Consensus 231 --t~~a~~Al~~L~~---aGI~l~nQsVLLkGVND~~~~l~~L~~~L~~~gV~ 278 (417)
T TIGR03820 231 --TASSKKALAKLAD---AGIPLGNQSVLLAGVNDCPRIMKKLVHKLVANRVR 278 (417)
T ss_pred --hHHHHHHHHHHHH---cCCEEEeeceEECCcCCCHHHHHHHHHHHHHCCCe
Confidence 4677788888888 47654 5667778888999999999999999974
|
This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region. |
| >COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3e-06 Score=81.71 Aligned_cols=206 Identities=16% Similarity=0.196 Sum_probs=135.6
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCC---CCC---CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHH
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRA---PPP---PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKL 202 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~---~~~---l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~I 202 (376)
...+.+..-||+.+|.||.=+.... +.. ++++++.+.+ ....+++-|++|||+.- + ..+.+.++++..
T Consensus 35 ~~~~~vf~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~--~~~~~~~gvt~SGGEP~-~---q~e~~~~~~~~a 108 (260)
T COG1180 35 SIRLSVFLQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKA--FYSESGGGVTFSGGEPT-L---QAEFALDLLRAA 108 (260)
T ss_pred cEEEEEEeCCCCCCCCCCCChhHhcccccCchhhcCHHHHHHHh--hhcCCCCEEEEECCcch-h---hHHHHHHHHHHH
Confidence 3445555679999999997664321 111 3434333322 23347899999999742 2 156788899999
Q ss_pred HhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccc-hHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE
Q 017179 203 KELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI 281 (376)
Q Consensus 203 k~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEt-v~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~i 281 (376)
|+. ++.+.+-+--|. .++.++.|.+. +|.+..-+=. .+++|+.+. +.+.+..++.++.+.+.... +.+++-+
T Consensus 109 ke~--Gl~~~l~TnG~~-~~~~~~~l~~~-~D~v~~DlK~~~~~~y~~~t--g~~~~~vl~~~~~l~~~g~~-ve~r~lv 181 (260)
T COG1180 109 KER--GLHVALDTNGFL-PPEALEELLPL-LDAVLLDLKAFDDELYRKLT--GADNEPVLENLELLADLGVH-VEIRTLV 181 (260)
T ss_pred HHC--CCcEEEEcCCCC-CHHHHHHHHhh-cCeEEEeeccCChHHHHHHh--CCCcHHHHHHHHHHHcCCCe-EEEEEEE
Confidence 886 677776665443 56667777776 6766554433 457799988 45559999999999984222 4567777
Q ss_pred EEecCCCHHHHHHHHHHHHHcCC-cEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhccc
Q 017179 282 MLGCGETPDQVVSTMEKVRAAGV-DVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASG 349 (376)
Q Consensus 282 mvGlGET~ee~~e~L~~Lrel~v-d~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sg 349 (376)
+=|+...++|+.+..+++.++.. .-+.+-+|.++.. +.....-..+..+...+.+.+.|..++.-|
T Consensus 182 iPg~~d~~e~i~~i~~~i~~~~~~~p~~~l~fhp~~~--~~~~p~~~~~~le~~~~~a~~~~~~~v~~~ 248 (260)
T COG1180 182 IPGYNDDEEEIRELAEFIADLGPEIPIHLLRFHPDYK--LKDLPPTPVETLEEAKKLAKEEGLKFVYIG 248 (260)
T ss_pred ECCCCCCHHHHHHHHHHHHhcCCcccEEEeccccCcc--ccccCCCcHHHHHHhHhhhHHHHHHhHhhh
Confidence 77888999999999999998543 3466656643322 111112234667788888888887777543
|
|
| >COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.1e-07 Score=89.81 Aligned_cols=164 Identities=16% Similarity=0.273 Sum_probs=114.5
Q ss_pred EeeeCCccCCCCcCCCCCCCCC-CC-----CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhh
Q 017179 132 IMILGDTCTRGCRFCNVKTSRA-PP-----PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205 (376)
Q Consensus 132 ~m~i~d~C~~~C~FC~v~~~r~-~~-----~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~ 205 (376)
.+-+++.|+++|-||.++..|. .. ..+.....++.+.+..++..-+-||||+. +.. .+...++++.+|+.
T Consensus 31 VlFvTG~C~~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~~a~GasiTGGdP--l~~--ieR~~~~ir~LK~e 106 (353)
T COG2108 31 VLFVTGLCNRSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLMDALGASITGGDP--LLE--IERTVEYIRLLKDE 106 (353)
T ss_pred EEEEecccCCCcccCcCCHHhcCCcceeecccccCcHHHHHHHHHHhccccccccCCCh--HHH--HHHHHHHHHHHHHh
Confidence 3445899999999999986431 11 13444445555555566667778899863 211 56788899999988
Q ss_pred C-CCcEEEEecCCCCCChHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEe
Q 017179 206 K-PNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG 284 (376)
Q Consensus 206 ~-p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvG 284 (376)
+ .+.+|++.++....+++.++.|.+||+|-+-.+.. .+.....+.+++.|..|++. |+.+.-- |=.
T Consensus 107 fG~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~---------~~~~~~~e~~i~~l~~A~~~---g~dvG~E-iPa 173 (353)
T COG2108 107 FGEDFHIHLYTTGILATEEALKALAEAGLDEIRFHPP---------RPGSKSSEKYIENLKIAKKY---GMDVGVE-IPA 173 (353)
T ss_pred hccceeEEEeeccccCCHHHHHHHHhCCCCeEEecCC---------CccccccHHHHHHHHHHHHh---Cccceee-cCC
Confidence 8 46899999976666899999999999998765422 11223468889999999985 3322111 112
Q ss_pred cCCCHHHHHHHHHHHHHcCCcEEEeecC
Q 017179 285 CGETPDQVVSTMEKVRAAGVDVMTFGQY 312 (376)
Q Consensus 285 lGET~ee~~e~L~~Lrel~vd~v~~~qY 312 (376)
+=.-++.+.+..+.+.+.+.+++++.+.
T Consensus 174 ipg~e~~i~e~~~~~~~~~~~FlNiNEL 201 (353)
T COG2108 174 IPGEEEAILEFAKALDENGLDFLNINEL 201 (353)
T ss_pred CcchHHHHHHHHHHHHhcccceeeeeee
Confidence 2345678889999999999999998544
|
|
| >PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.4e-06 Score=83.81 Aligned_cols=202 Identities=11% Similarity=0.169 Sum_probs=126.3
Q ss_pred EeeeCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHHH----CCCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHhhC
Q 017179 132 IMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIAS----WGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELK 206 (376)
Q Consensus 132 ~m~i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~----~G~~eIvLTs-g~r~dl~d~g~~~~~elvr~Ik~~~ 206 (376)
.+-.+.||+.+|.||+-....-...++.+||+..+..+.. .++..|++.| |+.-. ..+.+.+.++.+++..
T Consensus 102 cvSsq~GC~l~C~FC~t~~~G~~rnlt~~EIv~Qv~~~~~~~~~~~v~~VvfmGmGEPL~----N~d~v~~~l~~l~~~~ 177 (348)
T PRK14467 102 CVSSQVGCAVGCKFCATAKDGLIRNLRTAEIIDQYIQVQKFLGENRIRNVVFMGMGEPLA----NYENVRKAVQIMTSPW 177 (348)
T ss_pred EEEcCCCCCCcCcCCCCCCCCCcCCCCHHHHHHHHHHHHHHhccCCCCeEEEEccChhhc----CHHHHHHHHHHHcChh
Confidence 3445899999999998765321125899999988766554 3579999999 75321 1456777777776532
Q ss_pred CCc-----EEEEecCCCCCChHHHHHHHHcC----cccccccccch-HHHHHhhcCC--CCCHHHHHHHHHHHHHhCCCC
Q 017179 207 PNM-----LIEALVPDFRGNNGCVREVAKSG----LNVFAHNIETV-EELQSAVRDH--RANFKQSLDVLMMAKDYVPAG 274 (376)
Q Consensus 207 p~i-----~Ie~l~pd~~g~~e~l~~L~~aG----ld~i~h~lEtv-~~l~~~vr~r--~~t~e~~L~vl~~ak~~~p~G 274 (376)
++ ++.+.|-.+ ...+..+.... ++ +...+... ++.++++.|. ++.++..++.++...+....-
T Consensus 178 -gl~~~~r~itvsT~G~---~~~i~~l~~~~~l~~v~-LalSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~~~~~g~~ 252 (348)
T PRK14467 178 -GLDLSKRRITISTSGI---IHQIKRMAEDPVMPEVN-LAVSLNASSQKLRERIMPISKTNTLEELMEVLKQYPLPPGRR 252 (348)
T ss_pred -ccCcCCCcEEEECCCC---hhHHHHHHhhccccCee-EEEECCCCCHHHHHHhcCCccccCHHHHHHHHHHHHHhcCCe
Confidence 23 555555433 23345555432 23 22456655 5889988852 356677777776544322112
Q ss_pred ceEEEeEEEecCCCHHHHHHHHHHHHHcC-CcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhh
Q 017179 275 TLTKTSIMLGCGETPDQVVSTMEKVRAAG-VDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 275 i~tkt~imvGlGET~ee~~e~L~~Lrel~-vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
+.+..-+|=|+-.+++++.++.++++.++ +..|.+-+| .|. ...+. +.+.+++.+.+.++..+.|+..
T Consensus 253 V~ieyvLIpGvNDs~e~a~~La~~l~~l~~~~~VnLIPy-np~-~~~~~-~~ps~e~i~~f~~~L~~~gi~v 321 (348)
T PRK14467 253 IMLEYVLIKGVNDSPEDALRLAQLIGKNKKKFKVNLIPF-NPD-PELPY-ERPELERVYKFQKILWDNGIST 321 (348)
T ss_pred EEEEEEEECCccCCHHHHHHHHHHHhcCCCceEEEEecC-CCC-CCCCC-CCCCHHHHHHHHHHHHHCCCcE
Confidence 55566677788899999999999999885 445666555 231 11222 2244567777777777777654
|
|
| >COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.7e-06 Score=88.20 Aligned_cols=178 Identities=15% Similarity=0.252 Sum_probs=128.3
Q ss_pred cEEEEeeeCCccCC-CCcCCCCCC------CC---CCCC-------C-CchhHHHHHHHHHHCCC---c-EEEEEeeeCC
Q 017179 128 ATATIMILGDTCTR-GCRFCNVKT------SR---APPP-------P-DPDEPTNVAEAIASWGL---D-YVVITSVDRD 185 (376)
Q Consensus 128 ~tat~m~i~d~C~~-~C~FC~v~~------~r---~~~~-------l-~~eEi~~~a~al~~~G~---~-eIvLTsg~r~ 185 (376)
+.+..|.--.+|+. .|-||...- +. .|.. . +..+....++++...|- + ++.|-||.=.
T Consensus 66 aVVaVmt~p~~CPHg~CvfCpgg~~~~spQSytg~ep~~~R~~~~~ydpY~q~~~Rl~qL~~igh~~~KvEliimGGTFt 145 (515)
T COG1243 66 AVVAVMTSPHGCPHGRCVFCPGGPDKDSPQSYTGEEPAALRAIKNRYDPYEQVRARLKQLETIGHTSDKVELIIMGGTFT 145 (515)
T ss_pred eEEEEecCCCCCCCCeEEeCCCCCCCCCCcccCCCCchhhhHhhccCCcHHHHHHHHHHHHHcCCCcceEEEEEeccccc
Confidence 35555555679997 999997661 11 1111 2 23566677888888885 3 8888999755
Q ss_pred CCCcccHHHHHHHH-HHHH----------hhC--CCcE---EEEe-cCCCCCChHHHHHHHHcCcccccccccchH-HHH
Q 017179 186 DLADQGSGHFAQTV-RKLK----------ELK--PNML---IEAL-VPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQ 247 (376)
Q Consensus 186 dl~d~g~~~~~elv-r~Ik----------~~~--p~i~---Ie~l-~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~ 247 (376)
.++..--++|...+ +++. ..+ ...+ |.+. -||+. +++.+..|+..|+..+..+++++. +++
T Consensus 146 a~~~~yqe~Fi~~~~~amn~f~~~le~a~~~ne~~~~r~vgitiETRPD~~-~ee~ld~mlkyG~TrVELGVQSiyd~Vl 224 (515)
T COG1243 146 ALSLEYQEWFLKVALKAMNDFGYDLEEAQRKNETAELRCVGITIETRPDYI-DEEHLDQMLKYGVTRVELGVQSIYDDVL 224 (515)
T ss_pred CCCHHHHHHHHHHHHHhhhccchhHHHHHHhhcccccceeEEEEecCcccc-CHHHHHHHHhcCCcEEEEeeeeHHHHHH
Confidence 44422223344333 3332 011 0112 2222 37776 789999999999999999999875 999
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHcC---CcEEEee
Q 017179 248 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAG---VDVMTFG 310 (376)
Q Consensus 248 ~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET~ee~~e~L~~Lrel~---vd~v~~~ 310 (376)
++++ |+|+.++..+.-+.+|. .|+.+..+||.|| |-+.|-=+++.+.+-+.+ .|++-|-
T Consensus 225 ~~~~-RGHtvedv~~a~rLlKd---~GfKv~~HiMpGLPgs~~erDl~~f~~~f~~p~f~PDmlKIY 287 (515)
T COG1243 225 ERTK-RGHTVEDVVEATRLLKD---AGFKVGYHIMPGLPGSDFERDLESFREIFEDPRFRPDMLKIY 287 (515)
T ss_pred HHhc-CCccHHHHHHHHHHHHh---cCcEEEEEecCCCCCCChHHHHHHHHHHHhCCCCCCCeEEEe
Confidence 9999 99999999999999999 6899999999999 999888888888888887 8998885
|
|
| >COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=4e-07 Score=88.15 Aligned_cols=170 Identities=16% Similarity=0.307 Sum_probs=114.8
Q ss_pred eeCCccCCCCcCCCCCCCC-CC-CCCCchhHHHHHHHHHHCCC-cEEEEEeee--CCCCCcccHHHHHHHHHHHHhh--C
Q 017179 134 ILGDTCTRGCRFCNVKTSR-AP-PPPDPDEPTNVAEAIASWGL-DYVVITSVD--RDDLADQGSGHFAQTVRKLKEL--K 206 (376)
Q Consensus 134 ~i~d~C~~~C~FC~v~~~r-~~-~~l~~eEi~~~a~al~~~G~-~eIvLTsg~--r~dl~d~g~~~~~elvr~Ik~~--~ 206 (376)
+++|.|..+|.||+-..+. .| ..++|+|++...-...+..+ .-..|+||- .+|+. -+.+.++.+.++-. +
T Consensus 59 LlTN~CiyDC~YCINr~s~~~pra~ftp~Eiv~ltlnfYrRnYIeGLFLSSGvi~~~DyT---mE~mi~var~LRle~~f 135 (404)
T COG4277 59 LLTNFCIYDCAYCINRSSNDTPRARFTPEEIVDLTLNFYRRNYIEGLFLSSGVIKNPDYT---MEEMIEVARILRLEHKF 135 (404)
T ss_pred HHhhhHHHhhHHHhccccCCCcccccCHHHHHHHHHHHHHHhhhhhheeccccccCcchH---HHHHHHHHHHHhhcccc
Confidence 4799999999999876543 23 24999999998766665554 667788774 34433 45666666666532 2
Q ss_pred -CCcEEEEecCCCCCChHHHHHHHHcCcccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHH---------------
Q 017179 207 -PNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKD--------------- 269 (376)
Q Consensus 207 -p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~--------------- 269 (376)
.-|+.. ++|.- +++.+++.--. +|.+.+|||+. ++-++.+.| ..++.+.++-+..++.
T Consensus 136 ~GYIHlK-~IPga--s~~li~eagly-adRvSiNIElp~~~~lk~lap-~K~p~dI~r~Mg~ir~~i~e~~e~~~r~r~t 210 (404)
T COG4277 136 RGYIHLK-IIPGA--SPDLIKEAGLY-ADRVSINIELPTDDGLKLLAP-EKDPTDILRSMGWIRLKILENAEDKRRKRHT 210 (404)
T ss_pred CcEEEEE-ecCCC--CHHHHHHHhhh-hheeEEeEecCCcchhhhhCC-CCChHHHHHHHHHHHHHHhhcccchhhhccC
Confidence 224444 44443 56666655433 68999999975 366677773 5556666665555544
Q ss_pred --hCCCCceEEEeEEEec-CCCHHHHHHHHHHHHH-cCCcEEEeecCC
Q 017179 270 --YVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRA-AGVDVMTFGQYM 313 (376)
Q Consensus 270 --~~p~Gi~tkt~imvGl-GET~ee~~e~L~~Lre-l~vd~v~~~qY~ 313 (376)
..|.| -+|.||||- ||||++++..-..|.. .....|-+..|+
T Consensus 211 p~fapaG--QSTQmivGA~~~tD~~Ilsrs~~ly~~y~lkRVyySaf~ 256 (404)
T COG4277 211 PEFAPAG--QSTQMIVGADGETDEDILSRSENLYGRYSLKRVYYSAFS 256 (404)
T ss_pred ccccCCC--CceEEEEecCCCchHHHHHHHHHHhhccceeEEEeeccc
Confidence 12444 478999999 9999999999888874 466777776554
|
|
| >PRK13745 anaerobic sulfatase-maturase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.7e-06 Score=88.36 Aligned_cols=170 Identities=9% Similarity=0.128 Sum_probs=115.6
Q ss_pred eCCccCCCCcCCCCCCCC-----CC-CCCCchhHHHHHHHHHHC-CCcEE--EEEeeeCCCCCcccHHHHHHHHHHHHhh
Q 017179 135 LGDTCTRGCRFCNVKTSR-----AP-PPPDPDEPTNVAEAIASW-GLDYV--VITSVDRDDLADQGSGHFAQTVRKLKEL 205 (376)
Q Consensus 135 i~d~C~~~C~FC~v~~~r-----~~-~~l~~eEi~~~a~al~~~-G~~eI--vLTsg~r~dl~d~g~~~~~elvr~Ik~~ 205 (376)
.++.|+.+|.||...... .+ ..++.+++.+.++.+.+. |...+ .++||+.- +. +...|.++++.+++.
T Consensus 20 ~~~~CNl~C~yC~~~~~~~~~~~~~~~~ms~e~~~~~i~~~~~~~~~~~v~i~f~GGEPl-L~--~~~~~~~~~~~~~~~ 96 (412)
T PRK13745 20 VGAVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKFIKEYINSQTMPQVLFTWHGGETL-MR--PLSFYKKALELQKKY 96 (412)
T ss_pred cCCCcCCCCcccCCcCCCcccccCccCCCCHHHHHHHHHHHHHcCCCCeEEEEEEccccC-CC--cHHHHHHHHHHHHHH
Confidence 457999999999875321 12 238999999988887754 66554 44788632 21 123455555544432
Q ss_pred CC--CcEEEEecCCCCCChHHHHHHHHcCcccccccccchHHHHHhhcC---CCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017179 206 KP--NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRD---HRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (376)
Q Consensus 206 ~p--~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~---r~~t~e~~L~vl~~ak~~~p~Gi~tkt~ 280 (376)
.. ++.+.+.|-...-+++.++.|++.+. .+...||..+++....|. .+.+|++.++.|+.+++ .|+.+..
T Consensus 97 ~~~~~i~~~i~TNG~ll~~e~~~~l~~~~~-~v~ISlDG~~~~hD~~R~~~~g~gsf~~v~~~i~~l~~---~gi~~~i- 171 (412)
T PRK13745 97 ARGRQIDNCIQTNGTLLTDEWCEFFRENNF-LVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLLKK---HGVEWNA- 171 (412)
T ss_pred cCCCceEEEEeecCEeCCHHHHHHHHHcCe-EEEEEecCCHHHhhhhcCCCCCCccHHHHHHHHHHHHH---cCCCEEE-
Confidence 22 34444544332226888999999986 788889987777766652 24689999999999998 4654433
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 281 imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
+.=+ .++.++..+.++++++++++.+.|.+++
T Consensus 172 -~~vv~~~n~~~~~e~~~~~~~lg~~~~~~~p~~ 204 (412)
T PRK13745 172 -MAVVNDFNADYPLDFYHFFKELDCHYIQFAPIV 204 (412)
T ss_pred -EEEEcCCccccHHHHHHHHHHcCCCeEEEEecc
Confidence 3333 6777888999999999999988776555
|
|
| >COG0731 Fe-S oxidoreductases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2e-06 Score=84.01 Aligned_cols=212 Identities=15% Similarity=0.230 Sum_probs=143.0
Q ss_pred CccCCCCcCCCCCCCC-----CCCCCCchhHHHHHHHHHHC------CCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhh
Q 017179 137 DTCTRGCRFCNVKTSR-----APPPPDPDEPTNVAEAIASW------GLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205 (376)
Q Consensus 137 d~C~~~C~FC~v~~~r-----~~~~l~~eEi~~~a~al~~~------G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~ 205 (376)
..|+.+|-||-..... .|....+++|.+..+.+... ..++|-|++.--|-|. .++-++|+.+|+.
T Consensus 32 ~~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~GEPTLy----~~L~elI~~~k~~ 107 (296)
T COG0731 32 KWCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISLSGEPTLY----PNLGELIEEIKKR 107 (296)
T ss_pred hhhcCCCeEEecccCCCCCCCCCceecHHHHHHHHHHHhcccccccCCCCEEEEeCCCCcccc----cCHHHHHHHHHhc
Confidence 3899999999774321 12236788888888887766 5689999876545542 2477888888876
Q ss_pred CCCcEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCC--CCCHHHHHHHHHHHHHh-CCCCceEEEeE
Q 017179 206 KPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDH--RANFKQSLDVLMMAKDY-VPAGTLTKTSI 281 (376)
Q Consensus 206 ~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r--~~t~e~~L~vl~~ak~~-~p~Gi~tkt~i 281 (376)
.. ..+-+++-.- .++.++.|. -+|.+-..+++.+ ..|++|+-+ +..++..++.|+..++. ... +.+.+.+
T Consensus 108 g~-~~tflvTNgs--lpdv~~~L~--~~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~~~~~~~~~-~vir~tl 181 (296)
T COG0731 108 GK-KTTFLVTNGS--LPDVLEELK--LPDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEIFRSEYKGR-TVIRTTL 181 (296)
T ss_pred CC-ceEEEEeCCC--hHHHHHHhc--cCCEEEEEeccCCHHHHHHhcCCCCcchHHHHHHHHHHhhhcCCCc-EEEEEEE
Confidence 32 4444455322 256777776 3688888899876 999999822 35799999999999986 333 5677777
Q ss_pred EEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCC--CCCcccCChHH-HHHHHHHHHHHhhhhhccchhHhhhhhh
Q 017179 282 MLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRH--MPVSEYITPEA-FERYRALGMEMGFRYVASGPMVRSSYKA 358 (376)
Q Consensus 282 mvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~--~~v~~~v~pe~-~~~l~~~a~~~gf~~~~sgp~vrssy~a 358 (376)
+=|+--++|++.+..++|+.+..|+|-+--|++|+... ++..+.+.-++ .+.-+.++...|+.++..-.-.|....+
T Consensus 182 vkg~N~~~e~~~~~a~ll~~~~Pd~velk~~~rpgas~~~l~~~~~p~~e~~~~f~~~l~~~~~~~~l~~~~~sr~~ll~ 261 (296)
T COG0731 182 VKGINDDEEELEEYAELLERINPDFVELKTYMRPGASRYRLPRSNMPLHEEVLEFAKELGEELGYEILDESEGSRVVLLA 261 (296)
T ss_pred eccccCChHHHHHHHHHHHhcCCCeEEEecCccCChHhhccCccccchhHHHHHHHHHhhcccCeeeeeccCCceEEEcc
Confidence 77787788889999999999999999999999985322 33333222222 2233344444456665444444554444
|
|
| >PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.7e-06 Score=83.37 Aligned_cols=200 Identities=11% Similarity=0.068 Sum_probs=123.1
Q ss_pred eCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHHHC-CCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHhhC--CCcE
Q 017179 135 LGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW-GLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELK--PNML 210 (376)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~~-G~~eIvLTs-g~r~dl~d~g~~~~~elvr~Ik~~~--p~i~ 210 (376)
-+.+|+.+|.||......-...++.+||++.+..+.+. .+++|+++| |+.-+. .+...+.++.|.+.. +.-.
T Consensus 102 sQvGC~~~C~FC~tg~~g~~RnLs~~EI~~Qv~~~~~~~~i~nIVfmGmGEPl~N----~d~vl~ai~~l~~~~~i~~r~ 177 (344)
T PRK14464 102 TQVGCAVGCVFCMTGRSGLLRQLGSAEIVAQVVLARRRRAVKKVVFMGMGEPAHN----LDNVLEAIDLLGTEGGIGHKN 177 (344)
T ss_pred ccCCcCCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeccCcccCC----HHHHHHHHHHhhchhcCCCce
Confidence 47899999999976543212248899999988776654 589999999 764322 234445444444321 2222
Q ss_pred EEEecCCCCCChHHHHHHHHcCcc-cccccccch-HHHHHhhcC--CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC
Q 017179 211 IEALVPDFRGNNGCVREVAKSGLN-VFAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG 286 (376)
Q Consensus 211 Ie~l~pd~~g~~e~l~~L~~aGld-~i~h~lEtv-~~l~~~vr~--r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlG 286 (376)
|-+++ .|..+.+.+|.+.++. .+...+++. ++++.++.| ++++.++.++.++...+....-+.+-.-+|=|+-
T Consensus 178 itiST---~G~~~~i~rL~~~~v~~~LaiSLhA~~~e~R~~imP~~~~~~l~el~~a~~~~~~~~grri~~EyvLl~GVN 254 (344)
T PRK14464 178 LVFST---VGDPRVFERLPQQRVKPALALSLHTTRAELRARLLPRAPRIAPEELVELGEAYARATGYPIQYQWTLLEGVN 254 (344)
T ss_pred EEEec---ccCchHHHHHHHhcCChHHHHHhcCCChhHhheeCCccCCCCHHHHHHHHHHHHHHHCCEEEEEEEEeCCCC
Confidence 22222 1245567777765433 234456655 488887775 4678899989888776653221222333444789
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhh
Q 017179 287 ETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 287 ET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
.+.|+..++.+.|+.+.+. |.+-+| .|. .+.... .+.+++.+.+++.-.+.|+..
T Consensus 255 Ds~e~a~~L~~~l~~~~~~-vNLIPy-N~v-~g~~~~-rp~~~~i~~f~~~L~~~gi~~ 309 (344)
T PRK14464 255 DSDEEMDGIVRLLKGKYAV-MNLIPY-NSV-DGDAYR-RPSGERIVAMARYLHRRGVLT 309 (344)
T ss_pred CCHHHHHHHHHHHhccccc-cceecC-Ccc-CCCCcc-CCCHHHHHHHHHHHHHCCceE
Confidence 9999999999999977653 333344 331 222222 244667777777767777644
|
|
| >COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.3e-06 Score=87.04 Aligned_cols=189 Identities=18% Similarity=0.270 Sum_probs=129.5
Q ss_pred eeeCCccCCC----CcCCCCCCCCCCCCCCchhHHHHHHHHHHCCCcEEEEEeee------CCC----CCcccHHHHHHH
Q 017179 133 MILGDTCTRG----CRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVD------RDD----LADQGSGHFAQT 198 (376)
Q Consensus 133 m~i~d~C~~~----C~FC~v~~~r~~~~l~~eEi~~~a~al~~~G~~eIvLTsg~------r~d----l~d~g~~~~~el 198 (376)
|-...+|.+. |+||.=+.-..+...++|.++++++++.+.|++++.|-=+. .++ .|.-..+-+.++
T Consensus 187 iETyRGC~r~~~ggCSFCtEp~~g~~~~R~~e~Vv~EVkaLY~~GvrhFRlGRQ~difsy~~~~~g~e~P~PnPealekL 266 (560)
T COG1031 187 IETYRGCPRRVSGGCSFCTEPVRGRPEFRPPEDVVEEVKALYRAGVRHFRLGRQADIFSYGADDNGGEVPRPNPEALEKL 266 (560)
T ss_pred EeeccCCcccccCCCccccCcCcCCcccCCHHHHHHHHHHHHHhccceeeeccccceeeecccccCCCCCCCCHHHHHHH
Confidence 4457899987 99998775433445899999999999999999999874331 111 111125678888
Q ss_pred HHHHHhhCCCcEE-EE--ecCCCCC-----ChHHHHHHHHcC--cccccccccchH-HHHHhhcCCCCCHHHHHHHHHHH
Q 017179 199 VRKLKELKPNMLI-EA--LVPDFRG-----NNGCVREVAKSG--LNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMA 267 (376)
Q Consensus 199 vr~Ik~~~p~i~I-e~--l~pd~~g-----~~e~l~~L~~aG--ld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~a 267 (376)
.+.|+...|++.+ ++ .-|.... +.+.++.+..-| -|+.+.++||.| ++.+.=+ -..+.++.++.++..
T Consensus 267 ~~Gir~~AP~l~tLHiDNaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfGlEsaDp~V~r~Nn-L~~spEEvl~AV~iv 345 (560)
T COG1031 267 FRGIRNVAPNLKTLHIDNANPATIARYPEESREIAKVIVKYGTPGNVAAFGLESADPRVARKNN-LNASPEEVLEAVEIV 345 (560)
T ss_pred HHHHHhhCCCCeeeeecCCCchhhhcChHHHHHHHHHHHhhCCCCceeeeeccccCHHHHhhcc-ccCCHHHHHHHHHHH
Confidence 9999988887643 21 1221111 244555555443 377888899987 7766544 688999999999999
Q ss_pred HHhCC----CCc---eEEEeEEEec-CCCHHHHHHHHHHHHHcC-----CcEEEeecCCCCCCCCCCCcc
Q 017179 268 KDYVP----AGT---LTKTSIMLGC-GETPDQVVSTMEKVRAAG-----VDVMTFGQYMRPSKRHMPVSE 324 (376)
Q Consensus 268 k~~~p----~Gi---~tkt~imvGl-GET~ee~~e~L~~Lrel~-----vd~v~~~qY~~P~~~~~~v~~ 324 (376)
-++.. +|+ .-..++++|| |||.|-+.-..++|+++= +..|++-|-+ + ..++++.+
T Consensus 346 n~vG~~rg~nGlP~lLPGINfv~GL~GEtkeT~~ln~efL~~ild~gllvRRINIRqV~-~-fpgT~~~~ 413 (560)
T COG1031 346 NEVGGGRGYNGLPYLLPGINFVFGLPGETKETYELNYEFLKEILDEGLLVRRINIRQVV-V-FPGTPMWE 413 (560)
T ss_pred HHhcCccCcCCCccccccceeEecCCCccHHHHHhhHHHHHHHHhcCceEEEeeeeeEe-e-cCCCchhh
Confidence 88743 133 3478999999 999999998888888763 2456665553 2 23555554
|
|
| >TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.7e-06 Score=81.04 Aligned_cols=146 Identities=12% Similarity=0.096 Sum_probs=100.5
Q ss_pred CCchhHHHHHHHHHH---CCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCc
Q 017179 157 PDPDEPTNVAEAIAS---WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGL 233 (376)
Q Consensus 157 l~~eEi~~~a~al~~---~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGl 233 (376)
++.+++.+.++.... .+...|.||||+.--. .+.+.++++.+++. ++.+.+.+--+. ..+.+..+... +
T Consensus 106 ~t~eel~~~i~~~~~~~~~~~~~V~~sGGEPll~----~~~l~~l~~~~k~~--g~~~~i~TnG~~-~~~~~~~ll~~-~ 177 (295)
T TIGR02494 106 MTVEEVMRVVLRDSIFYRNSGGGVTLSGGEPLLQ----PEFALALLQACHER--GIHTAVETSGFT-PWETIEKVLPY-V 177 (295)
T ss_pred CcHHHHHHHHHHHHHhcccCCCcEEeeCcchhch----HHHHHHHHHHHHHc--CCcEeeeCCCCC-CHHHHHHHHhh-C
Confidence 567777776655432 2456899999874311 23346889998875 355555554332 34667776653 6
Q ss_pred ccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcC--CcEEEee
Q 017179 234 NVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAG--VDVMTFG 310 (376)
Q Consensus 234 d~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~--vd~v~~~ 310 (376)
|.+...++.. ++.|.+++ +.+++..++.|+.+.+.... +.+.+.+|-|+-.+.+|+.+.++++++++ ++.+.+.
T Consensus 178 d~~~isl~~~~~~~~~~~~--g~~~~~vl~~i~~l~~~~~~-~~i~~~~v~~~n~~~~ei~~l~~~~~~~~~~v~~v~l~ 254 (295)
T TIGR02494 178 DLFLFDIKHLDDERHKEVT--GVDNEPILENLEALAAAGKN-VVIRIPVIPGFNDSEENIEAIAAFLRKLEPGVDEIDLL 254 (295)
T ss_pred CEEEEeeccCChHHHHHHh--CCChHHHHHHHHHHHhCCCc-EEEEeceeCCcCCCHHHHHHHHHHHHHhccCCceEEec
Confidence 7777777765 48888887 35789999999999884222 44555566677788899999999999998 7788886
Q ss_pred cCC
Q 017179 311 QYM 313 (376)
Q Consensus 311 qY~ 313 (376)
+|.
T Consensus 255 ~~~ 257 (295)
T TIGR02494 255 PYH 257 (295)
T ss_pred CCC
Confidence 664
|
This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0 |
| >PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.4e-05 Score=80.38 Aligned_cols=200 Identities=12% Similarity=0.134 Sum_probs=126.6
Q ss_pred eCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHHHC------CCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCC
Q 017179 135 LGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW------GLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN 208 (376)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~~------G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~ 208 (376)
-+.||..+|.||+-....-...++++||++.+..+... .+..||+.|+--+ +. ..+.+.+.++.+++.. +
T Consensus 116 sQvGC~~~C~FCatg~~g~~RnLt~~EIv~QV~~~~~~~~~~~~~~~~vVfmGmGEP-L~--N~d~v~~~l~~l~~~~-G 191 (356)
T PRK14462 116 SQVGCKVGCAFCLTAKGGFVRNLSAGEIVGQILWIKKDNNIPYEKRVNIVYMGMGEP-LD--NLDNVSKAIKIFSEND-G 191 (356)
T ss_pred ccccCCCCCccCCCCCCCCcccCCHHHHHHHHHHHHHhhhccccccCCeEEeCCccc-cc--CHHHHHHHHHHhcCcc-C
Confidence 46799999999976543212248999999988765442 2568888844222 21 2456778888887642 2
Q ss_pred c-----EEEEecCCCCCChHHHHHHHHcCccc-ccccccch-HHHHHhhcC--CCCCHHHHHHHHHHHHHhCCCCceEEE
Q 017179 209 M-----LIEALVPDFRGNNGCVREVAKSGLNV-FAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKT 279 (376)
Q Consensus 209 i-----~Ie~l~pd~~g~~e~l~~L~~aGld~-i~h~lEtv-~~l~~~vr~--r~~t~e~~L~vl~~ak~~~p~Gi~tkt 279 (376)
+ +|.+.|-.+ .+.+++|.+.++.+ +.+.+... ++.++++.| +++..++.++.++...+....-+.+.-
T Consensus 192 l~~~~r~itVsTsG~---~~~i~~L~~~dl~v~LaiSLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~iey 268 (356)
T PRK14462 192 LAISPRRQTISTSGL---ASKIKKLGEMNLGVQLAISLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEY 268 (356)
T ss_pred CCcCCCceEEECCCC---hHHHHHHHhcCCCeEEEEECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEE
Confidence 3 444455333 35677787764421 34445544 488888875 345668888877644322222256677
Q ss_pred eEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhh
Q 017179 280 SIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 280 ~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
-+|=|+-.++||..++.++++.+++ .|.+-+| .|. ...+. +.+.+++.+.++++..+.|+..
T Consensus 269 vLI~GvNDs~e~a~~La~llk~l~~-~VnLIPy-n~~-~~~~~-~~ps~e~i~~f~~~l~~~gi~v 330 (356)
T PRK14462 269 LVIKDVNDDLKSAKKLVKLLNGIKA-KVNLILF-NPH-EGSKF-ERPSLEDMIKFQDYLNSKGLLC 330 (356)
T ss_pred EEECCCCCCHHHHHHHHHHHhhcCc-EEEEEeC-CCC-CCCCC-CCCCHHHHHHHHHHHHHCCCcE
Confidence 7888999999999999999999875 5666554 231 11122 2345677888887777666644
|
|
| >PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.2e-05 Score=76.78 Aligned_cols=200 Identities=11% Similarity=0.135 Sum_probs=124.1
Q ss_pred eCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHHHC--------C--CcEEEEEeeeCCCCCcccHHHHHHHHHHHHh
Q 017179 135 LGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW--------G--LDYVVITSVDRDDLADQGSGHFAQTVRKLKE 204 (376)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~~--------G--~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~ 204 (376)
-+-||+.+|.||+-+...-...++.+||++.+..+... | ++.||+.|+--|-+ ..+.+.+.++.+++
T Consensus 109 sQvGC~~~C~FC~t~~~g~~rnLt~~EIv~Qv~~~~~~~~~~~~~gg~~~~nvV~mGmGEPL~---N~d~v~~al~~l~~ 185 (372)
T PRK11194 109 SQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGEPLL---NLNNVVPAMEIMLD 185 (372)
T ss_pred cCCCCCCcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHhhhccccCCcccceEEEecCCcccc---CHHHHHHHHHHHhh
Confidence 35899999999986643212248999999887655421 2 78999988532211 13455666777764
Q ss_pred hCC-Cc---EEEEecCCCCCChHHHHHHHHcCcc-cccccccc-hHHHHHhhcCC--CCCHHHHHHHHHHHHHhCC---C
Q 017179 205 LKP-NM---LIEALVPDFRGNNGCVREVAKSGLN-VFAHNIET-VEELQSAVRDH--RANFKQSLDVLMMAKDYVP---A 273 (376)
Q Consensus 205 ~~p-~i---~Ie~l~pd~~g~~e~l~~L~~aGld-~i~h~lEt-v~~l~~~vr~r--~~t~e~~L~vl~~ak~~~p---~ 273 (376)
... ++ +|.+.|-. ....+..|.+.. + .+...+.. .++.++++.|. ++..++.++.++...+..+ .
T Consensus 186 ~~g~~i~~r~itVsTsG---~~~~i~~l~~~~-d~~LaiSLha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~~~~~~r 261 (372)
T PRK11194 186 DFGFGLSKRRVTLSTSG---VVPALDKLGDMI-DVALAISLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSNANQG 261 (372)
T ss_pred hhccCcCCCeEEEECCC---CchHHHHHHhcc-CeEEEeeccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHhcccCCC
Confidence 331 12 55555432 234566676543 3 23334554 45888888753 3455777766555444321 1
Q ss_pred CceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhh
Q 017179 274 GTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 274 Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
-+.+..-+|=|+-.+++++.++.++++.+++ .|.+-+| .|. .+.+. +.+.++..+.+.++..+.|+..
T Consensus 262 rI~irypLIpGvNDs~e~a~~La~ll~~l~~-~VnLIPY-N~~-~~~~~-~~ps~e~v~~f~~~L~~~Gi~v 329 (372)
T PRK11194 262 RVTVEYVMLDHVNDGTEHAHQLAELLKDTPC-KINLIPW-NPF-PGAPY-GRSSNSRIDRFSKVLMEYGFTV 329 (372)
T ss_pred eEEEEEEeECCCCCCHHHHHHHHHHHhcCCc-eEEEecC-CCC-CCCCC-CCCCHHHHHHHHHHHHHCCCeE
Confidence 2678888899999999999999999999864 5555444 231 12222 2345667788888877777754
|
|
| >KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.6e-07 Score=88.13 Aligned_cols=172 Identities=19% Similarity=0.242 Sum_probs=119.2
Q ss_pred EEEEee--eCCccCCCCcCCCCCCCC--CCC--CCCchhHHHHHHHHHHCCCcEEEEEeee---CCCCCcccHHHHHHHH
Q 017179 129 TATIMI--LGDTCTRGCRFCNVKTSR--APP--PPDPDEPTNVAEAIASWGLDYVVITSVD---RDDLADQGSGHFAQTV 199 (376)
Q Consensus 129 tat~m~--i~d~C~~~C~FC~v~~~r--~~~--~l~~eEi~~~a~al~~~G~~eIvLTsg~---r~dl~d~g~~~~~elv 199 (376)
.-||+- +++.|+.+|.||++..++ .|. .+...||++++...+..|++.+.||||+ +.|..+ .+
T Consensus 9 ~htyLrislte~cnlrc~ycMpsegv~l~pk~~~lav~eilrl~~~F~~qgv~knrLtggeptIr~di~~--------i~ 80 (323)
T KOG2876|consen 9 EHTYLRISLTEKCNLRCQYCMPSEGVPLKPKRKLLAVSEILRLAGLFAPQGVDKNRLTGGEPLIRQDIVP--------IV 80 (323)
T ss_pred hhhhhhhhhhhccccccceechhcCCcCccchhhcchhhhHHhhhhhhHhhhhhhhhcCCCCcccccccc--------hh
Confidence 345554 579999999999999876 232 2788999999999999999999999997 344322 22
Q ss_pred HHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEE
Q 017179 200 RKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTK 278 (376)
Q Consensus 200 r~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tk 278 (376)
..+.. .|++.--..++.-.-....+-.+.++|++.++..+++.. .-+.++. ++.++...+.-++.+.+..-+ +++
T Consensus 81 ~g~~~-l~gLks~~ITtng~vl~R~lp~lhkaglssiNiSldtl~~aKfa~~~-rr~g~v~V~~~iq~a~~lgy~--pvk 156 (323)
T KOG2876|consen 81 AGLSS-LPGLKSIGITTNGLVLARLLPQLHKAGLSSINISLDTLVRAKFAKLT-RRKGFVKVWASIQLAIELGYN--PVK 156 (323)
T ss_pred hhhhc-ccchhhhceeccchhhhhhhhHHHhhcccchhhhhhhhhHHHHHHHh-hhccHHHHHHHHhHHhhhCCC--Ccc
Confidence 22211 122211112221111345678899999999999999754 7777777 688999999999999875332 356
Q ss_pred EeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 279 TSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 279 t~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
++..+-=|-.+.|+.+....=+..++|+..+ .||
T Consensus 157 vn~v~~k~~n~~ev~Dfv~~tr~~p~DVrfI-e~m 190 (323)
T KOG2876|consen 157 VNCVVMKGLNEDEVFDFVLLTRMRPLDVRFI-EFM 190 (323)
T ss_pred eeeEEEeccCCCcccceeeecCCCCcceEEE-Eec
Confidence 6665555666677777777777777777666 555
|
|
| >PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.8e-05 Score=76.24 Aligned_cols=203 Identities=10% Similarity=0.137 Sum_probs=123.4
Q ss_pred EEeeeCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHHH-C--CCcEEE-EEeeeCCCCCcccHHHHHHHHHHHHhhC
Q 017179 131 TIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIAS-W--GLDYVV-ITSVDRDDLADQGSGHFAQTVRKLKELK 206 (376)
Q Consensus 131 t~m~i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~-~--G~~eIv-LTsg~r~dl~d~g~~~~~elvr~Ik~~~ 206 (376)
..+..+.||+.+|.||+-....-...++++||++.+..... + .++.|| +.||+.-. ..+.+.++++.+++..
T Consensus 103 ~cvSsqvGC~~~C~FC~tg~~G~~rnlt~~EI~~qv~~~~~~~~~~~~gvV~mggGEPLl----n~d~v~~~l~~l~~~~ 178 (342)
T PRK14454 103 ICVSTQVGCRMGCKFCASTIGGMVRNLTAGEMLDQILAAQNDIGERISNIVLMGSGEPLD----NYENVMKFLKIVNSPY 178 (342)
T ss_pred EEEEcCCCCCCcCCcCCCCCCCCcccCCHHHHHHHHHHHHHHhcCCCCCEEEECCchhhc----CHHHHHHHHHHHhccc
Confidence 34556789999999997654321224899999998877654 2 355655 45554321 1455777888887532
Q ss_pred CCc-----EEEEecCCCCCChHHHHHHHHcCccc-ccccccch-HHHHHhhcC--CCCCHHHHHHHHHHHHHhCCCCceE
Q 017179 207 PNM-----LIEALVPDFRGNNGCVREVAKSGLNV-FAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLT 277 (376)
Q Consensus 207 p~i-----~Ie~l~pd~~g~~e~l~~L~~aGld~-i~h~lEtv-~~l~~~vr~--r~~t~e~~L~vl~~ak~~~p~Gi~t 277 (376)
++ ++.+.|-.+ ...+..+.+.++.+ +...+-.. ++.++++.| .++..++.++.++........-+.+
T Consensus 179 -gi~~~~r~itvsTsG~---~p~i~~l~~~~~~~~laisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~~~~~rv~i 254 (342)
T PRK14454 179 -GLNIGQRHITLSTCGI---VPKIYELADENLQITLAISLHAPNDELRKKMMPIANKYSIEELIEACKYYINKTNRRITF 254 (342)
T ss_pred -ccCcCCCceEEECcCC---hhHHHHHHhhcccceEEEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHhCCEEEE
Confidence 23 445555333 22366777654321 34445444 477888775 3455666666665422221111445
Q ss_pred EEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhh
Q 017179 278 KTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 278 kt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
.--+|=|+-.+++|+.+..++++.+.+ .|.+-+| .|.. ..+. +.+.+++.+.+.++..+.|+..
T Consensus 255 ey~LI~gvNDs~eda~~La~llk~l~~-~VnLiPy-n~~~-~~~~-~~ps~e~l~~f~~~l~~~gi~v 318 (342)
T PRK14454 255 EYALVKGVNDSKEDAKELGKLLKGMLC-HVNLIPV-NEVK-ENGF-KKSSKEKIKKFKNILKKNGIET 318 (342)
T ss_pred EEEeECCCCCCHHHHHHHHHHHhcCCc-eEEEEec-CCCC-CCCC-CCCCHHHHHHHHHHHHHCCCcE
Confidence 666777899999999999999998753 4555444 2311 1121 2345678888888888878755
|
|
| >PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00011 Score=73.69 Aligned_cols=198 Identities=10% Similarity=0.057 Sum_probs=123.8
Q ss_pred eCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHHH---CCCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHhhC----
Q 017179 135 LGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIAS---WGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELK---- 206 (376)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~---~G~~eIvLTs-g~r~dl~d~g~~~~~elvr~Ik~~~---- 206 (376)
-+.||+.+|+||+-....-...++.+||+..+-.+.+ ..+..||+-| |+.-+ ..+.+.+.++.|+...
T Consensus 111 sQvGC~m~C~FC~tg~~g~~rnlta~EI~~qv~~~~~~~~~~~~niVFmGmGEPL~----N~d~V~~~~~~l~~~~~~~~ 186 (342)
T PRK14465 111 SQIGCTLNCKFCATAKLEFQGNLKAHEIVDQVLQVEKIVGDRATNVVFMGMGEPMH----NYFNVIRAASILHDPDAFNL 186 (342)
T ss_pred ecCCCCCCCCCCcCCCCCccCCCCHHHHHHHHHHHHHhcCCCceEEEEEcCCcchh----hHHHHHHHHHHHhChhhhcC
Confidence 4679999999998765432234889999988766654 3589999999 65321 1344555666665431
Q ss_pred CCcEEEEecCCCCCChHHHHHHHHcCc-ccccccccchH-HHHHhhcC--CCCCHHHHHHHHHHHHHhCCCCceEEEeEE
Q 017179 207 PNMLIEALVPDFRGNNGCVREVAKSGL-NVFAHNIETVE-ELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKTSIM 282 (376)
Q Consensus 207 p~i~Ie~l~pd~~g~~e~l~~L~~aGl-d~i~h~lEtv~-~l~~~vr~--r~~t~e~~L~vl~~ak~~~p~Gi~tkt~im 282 (376)
..-+|.+.+-. ....+..+.+... -.++..+...+ +.+.++-| +++..++.++.++...+....-+.+.--+|
T Consensus 187 ~~r~itvST~G---~~~~i~~l~~~~~~~~LaiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI 263 (342)
T PRK14465 187 GAKRITISTSG---VVNGIRRFIENKEPYNFAISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMI 263 (342)
T ss_pred CCCeEEEeCCC---chHHHHHHHhhccCceEEEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEE
Confidence 11255555532 2344566664322 24566677654 88888754 578899999999866643322133344455
Q ss_pred EecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhh
Q 017179 283 LGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFR 344 (376)
Q Consensus 283 vGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~ 344 (376)
=|+-.++||+.+..++++.+++. |.+-+|= |. .... +.+++++.+.++++-.+.|+.
T Consensus 264 ~GvNDs~eda~~L~~ll~~l~~k-VnLIPyN-~~--~~~~-~~ps~e~i~~F~~~L~~~Gi~ 320 (342)
T PRK14465 264 PGVNMGRENANKLVKIARSLDCK-INVIPLN-TE--FFGW-RRPTDDEVAEFIMLLEPAGVP 320 (342)
T ss_pred CCccCCHHHHHHHHHHHhhCCCc-EEEEccC-CC--CCCC-CCCCHHHHHHHHHHHHHCCCe
Confidence 57788999999999999997643 4443442 31 2222 224566777777776666654
|
|
| >PRK10076 pyruvate formate lyase II activase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=9.8e-05 Score=69.27 Aligned_cols=180 Identities=8% Similarity=0.059 Sum_probs=127.0
Q ss_pred CCCchhHHHHHHHHHH---CCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcC
Q 017179 156 PPDPDEPTNVAEAIAS---WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSG 232 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~---~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aG 232 (376)
.++++|+++.+..-.. .+-.-|++|||+.--. .+.+.++++.+|+. ++.+.+-+.-+. +.+.++.+...
T Consensus 18 ~~t~eel~~~~~~~~~f~~~sggGVt~SGGEPllq----~~fl~~l~~~~k~~--gi~~~leTnG~~-~~~~~~~l~~~- 89 (213)
T PRK10076 18 DITLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQ----AEFATRFLQRLRLW--GVSCAIETAGDA-PASKLLPLAKL- 89 (213)
T ss_pred ccCHHHHHHHHHhhhHhhcCCCCEEEEeCchHHcC----HHHHHHHHHHHHHc--CCCEEEECCCCC-CHHHHHHHHHh-
Confidence 3889999988776433 2556899999974211 45567899999875 466665554332 56677777654
Q ss_pred cccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeec
Q 017179 233 LNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 311 (376)
Q Consensus 233 ld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~q 311 (376)
+|.+..-+=.. ++.|+++. +.+.+..++.++.+.+.... +.+.+-+|=|+--++|++....+++++++++-+.+-+
T Consensus 90 ~D~~l~DiK~~d~~~~~~~t--G~~~~~il~nl~~l~~~g~~-v~iR~~vIPg~nd~~e~i~~ia~~l~~l~~~~~~llp 166 (213)
T PRK10076 90 CDEVLFDLKIMDATQARDVV--KMNLPRVLENLRLLVSEGVN-VIPRLPLIPGFTLSRENMQQALDVLIPLGIKQIHLLP 166 (213)
T ss_pred cCEEEEeeccCCHHHHHHHH--CCCHHHHHHHHHHHHhCCCc-EEEEEEEECCCCCCHHHHHHHHHHHHHcCCceEEEec
Confidence 56555444444 48888887 47789999999999885433 6789999999988999999999999999888777766
Q ss_pred CCCCCC--------CCCCCcc--cCChHHHHHHHHHHHHHhhhhhc
Q 017179 312 YMRPSK--------RHMPVSE--YITPEAFERYRALGMEMGFRYVA 347 (376)
Q Consensus 312 Y~~P~~--------~~~~v~~--~v~pe~~~~l~~~a~~~gf~~~~ 347 (376)
|- |.. ...++.. ..+++..+.+++++.+.|+.++.
T Consensus 167 yh-~~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 167 FH-QYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred CC-ccchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEEe
Confidence 53 310 0122322 24567788889999988887653
|
|
| >PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00015 Score=73.02 Aligned_cols=198 Identities=13% Similarity=0.171 Sum_probs=125.0
Q ss_pred CCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHHHC-----------------CCcEEEEEeeeCCCCCcccHHHHHHH
Q 017179 136 GDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW-----------------GLDYVVITSVDRDDLADQGSGHFAQT 198 (376)
Q Consensus 136 ~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~~-----------------G~~eIvLTsg~r~dl~d~g~~~~~el 198 (376)
+-||.-+|+||+-...+-..-|+..||+..+..+.+. .++.||+-|---| ...|-++
T Consensus 114 QvGC~mgC~FCaTG~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMGMGEP------L~NydnV 187 (371)
T PRK14461 114 QAGCGMGCVFCATGTLGLLRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMGMGEP------FANYDRW 187 (371)
T ss_pred cCCccCCCCcccCCCCCcccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEccCCc------hhhHHHH
Confidence 5699999999976654322349999999887665421 2678888765222 3345555
Q ss_pred HHHHHhhC-C------CcEEEEecCCCCCChHHHHHHHHcCccc-ccccccch-HHHHHhhcC--CCCCHHHHHHHHHHH
Q 017179 199 VRKLKELK-P------NMLIEALVPDFRGNNGCVREVAKSGLNV-FAHNIETV-EELQSAVRD--HRANFKQSLDVLMMA 267 (376)
Q Consensus 199 vr~Ik~~~-p------~i~Ie~l~pd~~g~~e~l~~L~~aGld~-i~h~lEtv-~~l~~~vr~--r~~t~e~~L~vl~~a 267 (376)
+++|+-.. | .-+|-+++-. ....+++|.+.++.+ ++..+... ++++.++-| +++..++.++.++..
T Consensus 188 ~~ai~il~d~~g~~is~R~ITVST~G---ivp~I~~la~~~~~v~LAiSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y 264 (371)
T PRK14461 188 WQAVERLHDPQGFNLGARSMTVSTVG---LVKGIRRLANERLPINLAISLHAPDDALRSELMPVNRRYPIADLMAATRDY 264 (371)
T ss_pred HHHHHHhcCccccCcCCCceEEEeec---chhHHHHHHhcccCceEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHH
Confidence 65555332 2 1133344422 345678888766542 45556654 488888776 688899999998887
Q ss_pred HHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcC-----CcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHh
Q 017179 268 KDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAG-----VDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMG 342 (376)
Q Consensus 268 k~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~-----vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~g 342 (376)
-+....-+.+-=-+|=|+-.++||..++.+.|+.++ ...|++-+| .|. .+.+.. .+.+++.+.+.++-.+.|
T Consensus 265 ~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~-Np~-~~~~~~-~ps~~~i~~F~~~L~~~g 341 (371)
T PRK14461 265 IAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNLIPW-NPV-PGTPLG-RSERERVTTFQRILTDYG 341 (371)
T ss_pred HHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEEecC-CCC-CCCCCC-CCCHHHHHHHHHHHHHCC
Confidence 654333233444556677999999999999999872 235555444 342 233322 245677777777777777
Q ss_pred hhh
Q 017179 343 FRY 345 (376)
Q Consensus 343 f~~ 345 (376)
+..
T Consensus 342 i~v 344 (371)
T PRK14461 342 IPC 344 (371)
T ss_pred ceE
Confidence 643
|
|
| >COG1244 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.2e-05 Score=76.00 Aligned_cols=173 Identities=18% Similarity=0.343 Sum_probs=117.7
Q ss_pred cEEEEeeeCCccC----CCCcCCCCCCCCCCCCCCchhHHHHHHHHHH-CC--CcE---EEEEeee---CCCCCcccHHH
Q 017179 128 ATATIMILGDTCT----RGCRFCNVKTSRAPPPPDPDEPTNVAEAIAS-WG--LDY---VVITSVD---RDDLADQGSGH 194 (376)
Q Consensus 128 ~tat~m~i~d~C~----~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~-~G--~~e---IvLTsg~---r~dl~d~g~~~ 194 (376)
++.|++.-+.||. .+|.+|+......+.+.+.+++.+....+.+ .. ..+ -++|||- ....|+. -
T Consensus 46 k~l~vILrT~GC~w~~~~gC~MCgY~~d~~~~~vs~E~l~~qfd~~~~k~~~~~~~~~vkIFTSGSFLD~~EVP~e---~ 122 (358)
T COG1244 46 KSLTVILRTRGCRWYREGGCYMCGYPADSAGEPVSEENLINQFDEAYSKYEGKFDEFVVKIFTSGSFLDPEEVPRE---A 122 (358)
T ss_pred ceEEEEEecCCcceeccCCcceeccccccCCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEcccccCChhhCCHH---H
Confidence 3666666688885 4699999987644567888999887765543 22 233 3569984 2234432 2
Q ss_pred HHHHHHHHHhhC--CCcEEEEecCCCCCChHHHHHHHHc--Ccc-cccccccchH-HHH-HhhcCCCCCHHHHHHHHHHH
Q 017179 195 FAQTVRKLKELK--PNMLIEALVPDFRGNNGCVREVAKS--GLN-VFAHNIETVE-ELQ-SAVRDHRANFKQSLDVLMMA 267 (376)
Q Consensus 195 ~~elvr~Ik~~~--p~i~Ie~l~pd~~g~~e~l~~L~~a--Gld-~i~h~lEtv~-~l~-~~vr~r~~t~e~~L~vl~~a 267 (376)
-..+++.|.+.. -.+.|| .-|+|. ++|.|..+.+- |.. -+++++||++ ++. ..|+ .+.+++++++..+.+
T Consensus 123 R~~Il~~is~~~~v~~vvvE-SRpE~I-~eE~l~e~~~il~gk~~EvaIGLETanD~ire~sIN-KGftF~df~~A~~~i 199 (358)
T COG1244 123 RRYILERISENDNVKEVVVE-SRPEFI-REERLEEITEILEGKIVEVAIGLETANDKIREDSIN-KGFTFEDFVRAAEII 199 (358)
T ss_pred HHHHHHHHhhccceeEEEee-cCchhc-CHHHHHHHHHhhCCceEEEEEecccCcHHHHHHhhh-cCCcHHHHHHHHHHH
Confidence 233455555432 124444 456776 68888888866 432 2688899986 776 5688 799999999999999
Q ss_pred HHhCCCCceEEEeEEEec-----CCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 268 KDYVPAGTLTKTSIMLGC-----GETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 268 k~~~p~Gi~tkt~imvGl-----GET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
++ .|+.++|.+|+=. .|..+|++.++. ..+-+.|.|.|-
T Consensus 200 r~---~g~~vktYlllKP~FlSE~eAI~D~i~Si~-~~~~~~d~iSin 243 (358)
T COG1244 200 RN---YGAKVKTYLLLKPPFLSEKEAIEDVISSIV-AAKPGTDTISIN 243 (358)
T ss_pred HH---cCCceeEEEEecccccChHHHHHHHHHHHH-HhccCCCeEEec
Confidence 98 4789999999865 455667777777 445567888874
|
|
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.2e-05 Score=71.06 Aligned_cols=148 Identities=18% Similarity=0.287 Sum_probs=115.5
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
.++.++..+.++.+.+.|+++|-++++..+..... .....+.++++++..+++.+.++... ..+.++.++++|++.
T Consensus 15 ~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~-~~~~~~~i~~l~~~~~~~~~~~l~~~---~~~~i~~a~~~g~~~ 90 (265)
T cd03174 15 TFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQ-MEDDWEVLRAIRKLVPNVKLQALVRN---REKGIERALEAGVDE 90 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccCcCcccccc-CCCHHHHHHHHHhccCCcEEEEEccC---chhhHHHHHhCCcCE
Confidence 47999999999999999999999999875422100 12256788888887777888777653 267899999999999
Q ss_pred ccccccchH-HHHHhhc-CCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC--CCHHHHHHHHHHHHHcCCcEEEee
Q 017179 236 FAHNIETVE-ELQSAVR-DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG--ETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 236 i~h~lEtv~-~l~~~vr-~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlG--ET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
+...+.+++ ....+.+ ++...++..++.++.+++ .|+.+..+++.-++ .+.+++.+.++.+.+++++.+.+.
T Consensus 91 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~---~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~ 166 (265)
T cd03174 91 VRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKE---AGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLK 166 (265)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH---CCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 999888776 2222222 122367888899999998 57888888888888 999999999999999999998874
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.4e-05 Score=74.82 Aligned_cols=199 Identities=14% Similarity=0.237 Sum_probs=119.9
Q ss_pred CccCCCCcCCCCCC---CCCCCCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEE
Q 017179 137 DTCTRGCRFCNVKT---SRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA 213 (376)
Q Consensus 137 d~C~~~C~FC~v~~---~r~~~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~ 213 (376)
.+|+.+|-||--.- .+.....+++++.++...+.+.|.+-|-+.||+..- . ...+++.++.+....|.++..-
T Consensus 126 sgCnfrCVfCQNwdISq~~~g~~v~~e~La~i~~~~~~~GakNvN~Vgg~Ptp--~--lp~Ile~l~~~~~~iPvvwNSn 201 (335)
T COG1313 126 SGCNFRCVFCQNWDISQFGIGKEVTPEDLAEIILELRRHGAKNVNFVGGDPTP--H--LPFILEALRYASENIPVVWNSN 201 (335)
T ss_pred cCcceEEEEecCccccccCCCeEecHHHHHHHHHHHHHhcCcceeecCCCCCC--c--hHHHHHHHHHHhcCCCEEEecC
Confidence 49999999995332 221224899999999999999999999999997421 1 3357777777766556555432
Q ss_pred ecCCCCCChHHHHHHHHcCccccccccc-chHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCC-HHH
Q 017179 214 LVPDFRGNNGCVREVAKSGLNVFAHNIE-TVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGET-PDQ 291 (376)
Q Consensus 214 l~pd~~g~~e~l~~L~~aGld~i~h~lE-tv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET-~ee 291 (376)
. + -+.|.++.|... +|++-.-+- .-++.-.+...-+.=++-..+.+..+.+..+ |+.+.--+|=|+-|. -..
T Consensus 202 m---Y-~s~E~l~lL~gv-VDiyL~DfKYgNdeca~kySkvp~Y~eVv~rn~~~~~~~~g-~~iiRHLVlPghlecCTkp 275 (335)
T COG1313 202 M---Y-MSEETLKLLDGV-VDIYLPDFKYGNDECAEKYSKVPNYWEVVTRNILEAKEQVG-GLIIRHLVLPGHLECCTKP 275 (335)
T ss_pred C---c-cCHHHHHHhhcc-ceeeecccccCCHHHHHHhhcCCchHHHHHHHHHHHHHhcC-ceEEEEEecCCchhhccHH
Confidence 1 1 156666655332 565532221 1122222222111224444555666666433 488888888888776 555
Q ss_pred HHHHHHHHHHcCCcEEEeecCCCCCCCC--C-CCcccCChHHHHHHHHHHHHHhhhhh
Q 017179 292 VVSTMEKVRAAGVDVMTFGQYMRPSKRH--M-PVSEYITPEAFERYRALGMEMGFRYV 346 (376)
Q Consensus 292 ~~e~L~~Lrel~vd~v~~~qY~~P~~~~--~-~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (376)
+++-+...-...+-+=-++|| +|.-+. . .+.+.++.++.+...++|++.||...
T Consensus 276 I~~wiae~~g~~~~vNiM~QY-~P~ykA~eypeI~R~lt~eE~e~a~~~a~~~gl~~~ 332 (335)
T COG1313 276 ILRWIAENLGNDVRVNIMFQY-RPEYKAEEYPEINRRLTREEYEKALEYAEKLGLTNI 332 (335)
T ss_pred HHHHHHHhCCCCeeEEehhhc-cchhhhhhchhhcccCCHHHHHHHHHHHHHcCCcee
Confidence 554443332222222223577 575333 2 26677899999999999999998653
|
|
| >COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00011 Score=72.24 Aligned_cols=170 Identities=17% Similarity=0.268 Sum_probs=106.1
Q ss_pred eCCccCCCCcCCCCCCCCC--CC---CCCchh-HHHHHHH-HHHCCC--cEEEEEeeeCCCCCcccHHHHHHHHHHHHhh
Q 017179 135 LGDTCTRGCRFCNVKTSRA--PP---PPDPDE-PTNVAEA-IASWGL--DYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205 (376)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~--~~---~l~~eE-i~~~a~a-l~~~G~--~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~ 205 (376)
..-||..+|.||-...... +. .+..++ +.+.++. +.+-|. ..|.+.+...+..+.--...+..-+.++...
T Consensus 35 py~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~el~~~~~k~~~i~is~~TDpyqp~E~~~~ltR~ilei~~~ 114 (297)
T COG1533 35 PYRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERELRKPGPKRTVIAISSVTDPYQPIEKEYRLTRKILEILLK 114 (297)
T ss_pred CcCCCCCCCceeecccccccccCCCceeeechhHHHHHHHHHhhccCCceEEEEecCCCCCCcchHHHHHHHHHHHHHHH
Confidence 3469999999997764321 11 234555 5555543 443344 4555544444444421111222222223222
Q ss_pred CCCcEEEEec--CCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEE
Q 017179 206 KPNMLIEALV--PDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIM 282 (376)
Q Consensus 206 ~p~i~Ie~l~--pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~im 282 (376)
. +..+.+.| +-...+.+.+..+..-+.-.+...+-|.+ ++-+.+-|+..+.+.++++++.+.+ .|+ .++++
T Consensus 115 ~-~~~v~I~TKS~lv~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~e---aGi--~~~v~ 188 (297)
T COG1533 115 Y-GFPVSIVTKSALVLRDLDLLLELAERGKVRVAVSITTLDEELAKILEPRAPSPEERLEALKELSE---AGI--PVGLF 188 (297)
T ss_pred c-CCcEEEEECCcchhhhHHHHHhhhhccceEEEEEeecCcHHHHHhcCCCCcCHHHHHHHHHHHHH---CCC--eEEEE
Confidence 2 34444444 21222456677776666555666677765 6888888888899999999999999 674 66666
Q ss_pred Eec---CCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 283 LGC---GETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 283 vGl---GET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
|+= |.+|+|+.+.+..+.+.++..+..+
T Consensus 189 v~PIiP~~~d~e~e~~l~~~~~ag~~~v~~~ 219 (297)
T COG1533 189 VAPIIPGLNDEELERILEAAAEAGARVVVYG 219 (297)
T ss_pred EecccCCCChHHHHHHHHHHHHcCCCeeEee
Confidence 664 9999999999999999999876653
|
|
| >COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0005 Score=69.83 Aligned_cols=188 Identities=13% Similarity=0.156 Sum_probs=122.3
Q ss_pred CCc-cCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHC-CCcE--EEEEeeeCCCCCcccHHHHHHHHHHHHhhC-CCc
Q 017179 136 GDT-CTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASW-GLDY--VVITSVDRDDLADQGSGHFAQTVRKLKELK-PNM 209 (376)
Q Consensus 136 ~d~-C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~-G~~e--IvLTsg~r~dl~d~g~~~~~elvr~Ik~~~-p~i 209 (376)
+.. |+.+|.||-........ .++.+.+++.++.+.+. +.+. |...||+.- +. | ..|.+.+..+.+++ .+.
T Consensus 14 t~~~CNL~C~YC~~~~~~~~~~~Ms~etle~~i~~~~~~~~~~~v~~~w~GGEPl-L~--~-~~f~~~~~~l~~k~~~~~ 89 (378)
T COG0641 14 TGFECNLDCKYCFYLEKESLQRIMSDETLEEYVRQYIAASNGDKVTFTWQGGEPL-LA--G-LDFYRKAVALQQKYANGK 89 (378)
T ss_pred ccCccCCCCCeeCcccCCCCCCCCCHHHHHHHHHHHHhhCCCCeeEEEEECCccc-cc--h-HHHHHHHHHHHHHHhcCC
Confidence 344 99999999888643222 38888888888877654 4466 777888742 21 1 23445454444333 244
Q ss_pred EEE--EecCCCCCChHHHHHHHHcCcccccccccchHHHHHhhc---CCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEe
Q 017179 210 LIE--ALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVR---DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG 284 (376)
Q Consensus 210 ~Ie--~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr---~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvG 284 (376)
.|. +.+-...-+++..+.|++.+. .+.+.||..+++..+.| ..+.|++..++.|+.+++. ++.+.+.++
T Consensus 90 ~i~~siqTNg~LL~~e~~e~l~~~~~-~IgISiDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~~---~v~~~~~~v-- 163 (378)
T COG0641 90 TISNALQTNGTLLNDEWAEFLAEHDF-LIGISIDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQAH---GVDFNTLTV-- 163 (378)
T ss_pred eeEEEEEEcccccCHHHHHHHHhcCc-eEEEeccCchHhccccccCCCCCccHHHHHHHHHHHHHc---CCcEEEEEE--
Confidence 444 334322227888999999998 78888988766665554 2478999999999999993 455555555
Q ss_pred c-CCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCC-C-CcccCChHHHHHH
Q 017179 285 C-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHM-P-VSEYITPEAFERY 334 (376)
Q Consensus 285 l-GET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~-~-v~~~v~pe~~~~l 334 (376)
+ -++.+...+.+++|.+.++..+-|-+-+ ++.... + ....++++++..+
T Consensus 164 v~~~n~~~~~ei~~~l~~~g~~~i~fip~~-~~~~~~~~~~~~~~~~~~~~~f 215 (378)
T COG0641 164 VNRQNVLHPEEIYHFLKSEGSKFIQFIPLV-ESDNRGDSLLEFSVTAEEYGQF 215 (378)
T ss_pred EchhHhhCHHHHHHHHHHcccceEEEEecc-cCCCCCccccccccCHHHHHHH
Confidence 4 6888888889999999886666552222 222222 2 2344666665444
|
|
| >COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00015 Score=73.38 Aligned_cols=192 Identities=15% Similarity=0.194 Sum_probs=130.0
Q ss_pred ccCCC---CcCCCCCCC--CCCCCCCchhHHHHHHHHHHCCCc-----EEEEEeeeCCCCCcccHHHHHHHHHHHHhhC-
Q 017179 138 TCTRG---CRFCNVKTS--RAPPPPDPDEPTNVAEAIASWGLD-----YVVITSVDRDDLADQGSGHFAQTVRKLKELK- 206 (376)
Q Consensus 138 ~C~~~---C~FC~v~~~--r~~~~l~~eEi~~~a~al~~~G~~-----eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~- 206 (376)
-|... |.||..... ++ ....+..+++... .++|++ .+..+ +.++..- .-++.+.++.....+
T Consensus 36 ~c~~~~~~C~~cy~~v~~~~~-~~~~~~~v~~e~~--~~lg~~~e~~~~~~~~-~~~d~~c---~p~le~~~~r~~~~~~ 108 (414)
T COG1625 36 DCIPYRFGCDDCYLSVNELDT-GFIPPLMVEKEPD--EDLGLEFEEVLGAKQC-GNGDTFC---YPDLEPRGRRARLYYK 108 (414)
T ss_pred cCCCccccccceeeEEecccC-CCCCHhHhhcccc--cccccccccccceeec-CCCCccc---CcchhhhhhHHHhhcC
Confidence 34455 888876642 22 2244455544433 234442 22222 2233222 234667788777766
Q ss_pred -CCcEEEEecCCCCCChHHHHHHHHcCcccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEe
Q 017179 207 -PNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG 284 (376)
Q Consensus 207 -p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvG 284 (376)
+++++..+.+.+.-+.+..+.+.++|+|-+...+.|. +++++++- +....++.++.|+...+ .++.+-+.+++=
T Consensus 109 d~~~rL~~tsG~~~~lt~~~~~i~~~gvdev~~SVhtT~p~lR~klm-~n~~A~~~le~L~~f~~---~~~~v~a~iVl~ 184 (414)
T COG1625 109 DDDIRLSFTSGSGFTLTNRAERIIDAGVDEVYFSVHTTNPELRAKLM-KNPNAEQLLELLRRFAE---RCIEVHAQIVLC 184 (414)
T ss_pred CccceeeeeeccceeccchHHHHHHcCCCeeEEEEeeCCHHHHHHHh-cCCcHHHHHHHHHHHHH---hhhheeeEEEEc
Confidence 3467776777665567788889999999999998865 49998876 57788999999999988 457889999887
Q ss_pred cCCC-HHHHHHHHHHHHHcCCcEEEeecCCCC---CCCCCCCcccCChHHHHHHHHHHHHH
Q 017179 285 CGET-PDQVVSTMEKVRAAGVDVMTFGQYMRP---SKRHMPVSEYITPEAFERYRALGMEM 341 (376)
Q Consensus 285 lGET-~ee~~e~L~~Lrel~vd~v~~~qY~~P---~~~~~~v~~~v~pe~~~~l~~~a~~~ 341 (376)
=|-+ -+++.+++.+|.+.+...+.+.. ..| +....++-+.++|+..++++.+++++
T Consensus 185 PGvNdge~L~kT~~dL~~~g~~~~~~~~-~~pvGlt~~n~~~i~~~t~~~l~~~k~i~re~ 244 (414)
T COG1625 185 PGVNDGEELEKTLEDLEEWGAHEVILMR-VVPVGLTRYNRPGIRPPTPHELEEFKEIVREF 244 (414)
T ss_pred CCcCcHHHHHHHHHHHHHhCcCceeEEE-eecceeeecCCCCCCCCCHHHHHHHHHHHHHH
Confidence 7888 89999999999999987666643 235 12223366778888888887666543
|
|
| >COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00027 Score=70.51 Aligned_cols=180 Identities=17% Similarity=0.283 Sum_probs=114.9
Q ss_pred ChhhhhhhcCCCCcccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCCCCC--CCCchhHHHHHHHHHHC-CCcEEEE
Q 017179 103 KLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPP--PPDPDEPTNVAEAIASW-GLDYVVI 179 (376)
Q Consensus 103 ~L~tvce~A~cpn~~ec~~~~~~~~~tat~m~i~d~C~~~C~FC~v~~~r~~~--~l~~eEi~~~a~al~~~-G~~eIvL 179 (376)
..--++|...+|--+- .|-+.....|+.+++|.-.|+||--+..-+.. .+..+++....+.+++- -+++|+|
T Consensus 90 ~~Dpl~E~~~s~Vpgl-----~HrY~drvLll~t~~C~vyCRyCfRr~~~~~~~~~~~~~~~~~al~YIa~hPeI~eVll 164 (369)
T COG1509 90 SEDPLGEDDSSPVPGL-----THRYPDRVLLLVTGVCAVYCRYCFRRRFVGQDNQGFNKEEWDKALDYIAAHPEIREVLL 164 (369)
T ss_pred ccCcccccccCCCCCc-----eeecCCeEEEEecCcccceeeecccccccccccccCCHHHHHHHHHHHHcCchhheEEe
Confidence 3445566666665541 23355677788899999999999766542221 26888888888888765 4799999
Q ss_pred EeeeCCCCCcccHHHHHHHHHHHHhhCC--CcEEEE----ecCCCCCChHHHHHHHHcCcccc--cccccchHHHHHhhc
Q 017179 180 TSVDRDDLADQGSGHFAQTVRKLKELKP--NMLIEA----LVPDFRGNNGCVREVAKSGLNVF--AHNIETVEELQSAVR 251 (376)
Q Consensus 180 Tsg~r~dl~d~g~~~~~elvr~Ik~~~p--~i~Ie~----l~pd~~g~~e~l~~L~~aGld~i--~h~lEtv~~l~~~vr 251 (376)
||||.--+.| ..+..++++|.+... .++|.. ..|.-. +++..+.|.+++..++ .| +....++.+..
T Consensus 165 SGGDPL~ls~---~~L~~ll~~L~~IpHv~iiRi~TR~pvv~P~RI-t~~L~~~l~~~~~~v~~~tH-~NHp~Eit~e~- 238 (369)
T COG1509 165 SGGDPLSLSD---KKLEWLLKRLRAIPHVKIIRIGTRLPVVLPQRI-TDELCEILGKSRKPVWLVTH-FNHPNEITPEA- 238 (369)
T ss_pred cCCCccccCH---HHHHHHHHHHhcCCceeEEEeecccceechhhc-cHHHHHHHhccCceEEEEcc-cCChhhcCHHH-
Confidence 9998766665 457777777766431 134433 344332 5667777776554432 22 22223333322
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCceE--EEeEEEecCCCHHHHHHHHHHHHHcCCc
Q 017179 252 DHRANFKQSLDVLMMAKDYVPAGTLT--KTSIMLGCGETPDQVVSTMEKVRAAGVD 305 (376)
Q Consensus 252 ~r~~t~e~~L~vl~~ak~~~p~Gi~t--kt~imvGlGET~ee~~e~L~~Lrel~vd 305 (376)
.+.++.++. .|+.+ -|=++=|...+.+-+.++++.|.+++|-
T Consensus 239 ---------~~A~~~L~~---aGv~l~NQsVLLrGVND~~evl~~L~~~L~~~gV~ 282 (369)
T COG1509 239 ---------REACAKLRD---AGVPLLNQSVLLRGVNDDPEVLKELSRALFDAGVK 282 (369)
T ss_pred ---------HHHHHHHHH---cCceeecchheecccCCCHHHHHHHHHHHHHcCCc
Confidence 255555665 46654 3445668889999999999999999964
|
|
| >TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00013 Score=69.35 Aligned_cols=132 Identities=11% Similarity=0.099 Sum_probs=81.6
Q ss_pred EEEEeeeCCccCCCCcCCCCCCC-C--CC-C--CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHH
Q 017179 129 TATIMILGDTCTRGCRFCNVKTS-R--AP-P--PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKL 202 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~-r--~~-~--~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~I 202 (376)
.+.|+- ..+|+.+|.||..+.. . .. . .++.+|+++.++.+...|++.|+||||+.- +. .++.++++.+
T Consensus 23 ~~~FvR-~~gCNlrC~~Cdt~~~~~~~~~~~~~~~s~~ei~~~i~~~~~~~~~~V~lTGGEPl-l~----~~l~~li~~l 96 (238)
T TIGR03365 23 KTMFVR-TGGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALGGGTPLHVSLSGGNPA-LQ----KPLGELIDLG 96 (238)
T ss_pred eEEEEE-eCCcCCcCcCCCCccccCcccCCccccCCHHHHHHHHHHHhCCCCCeEEEeCCchh-hh----HhHHHHHHHH
Confidence 455554 5799999999986642 1 11 1 278899999988887778999999999742 11 2478899999
Q ss_pred HhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEE
Q 017179 203 KELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIM 282 (376)
Q Consensus 203 k~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~im 282 (376)
++. ++.+.+.+-... ..+ .+.+ +|.+...+...+. . ....++...+.++.+++ |..+...++
T Consensus 97 ~~~--g~~v~leTNGtl-~~~---~l~~--~d~v~vs~K~~~s-----g-~~~~~~~~~~~ik~l~~----~~~~~vK~V 158 (238)
T TIGR03365 97 KAK--GYRFALETQGSV-WQD---WFRD--LDDLTLSPKPPSS-----G-METDWQALDDCIERLDD----GPQTSLKVV 158 (238)
T ss_pred HHC--CCCEEEECCCCC-cHH---HHhh--CCEEEEeCCCCCC-----C-CCCcHHHHHHHHHHhhh----cCceEEEEE
Confidence 875 456655553321 112 2322 4455444433221 1 12347777777777776 245566666
Q ss_pred Ee
Q 017179 283 LG 284 (376)
Q Consensus 283 vG 284 (376)
|+
T Consensus 159 v~ 160 (238)
T TIGR03365 159 VF 160 (238)
T ss_pred EC
Confidence 66
|
This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine. |
| >PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A | Back alignment and domain information |
|---|
Probab=97.86 E-value=4.5e-05 Score=65.39 Aligned_cols=70 Identities=16% Similarity=0.322 Sum_probs=46.7
Q ss_pred CCccCCCCcCCCCCCCCCCC---CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCC
Q 017179 136 GDTCTRGCRFCNVKTSRAPP---PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (376)
Q Consensus 136 ~d~C~~~C~FC~v~~~r~~~---~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p 207 (376)
+++|+.+|.||..+...... .++.+.+.+.++.+...++..|.|+||+. -+. .....+.++++.+++..+
T Consensus 12 t~~Cnl~C~yC~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~i~l~GGEP-ll~-~~~~~l~~i~~~~k~~~~ 84 (139)
T PF13353_consen 12 TNGCNLRCKYCFNSEIWKFKRGKELSEEIIEEIIEELKNYGIKGIVLTGGEP-LLH-ENYDELLEILKYIKEKFP 84 (139)
T ss_dssp EC--SB--TT-TTCCCS-TT-SEEC-HHHHHHHCHHHCCCCCCEEEEECSTG-GGH-HSHHHHHHHHHHHHHTT-
T ss_pred cCcccccCcCcCCcccCcccccccccchhhhhhhhHHhcCCceEEEEcCCCe-eee-ccHhHHHHHHHHHHHhCC
Confidence 78899999999876543211 26777777778888889999999999873 231 125679999999999876
|
|
| >PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A | Back alignment and domain information |
|---|
Probab=97.71 E-value=4.5e-05 Score=63.87 Aligned_cols=80 Identities=19% Similarity=0.277 Sum_probs=45.2
Q ss_pred eCCccCCCCcCCCCCCCCC---CCCCCchhHHHHHHHHHHCCC--cEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCc
Q 017179 135 LGDTCTRGCRFCNVKTSRA---PPPPDPDEPTNVAEAIASWGL--DYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM 209 (376)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~---~~~l~~eEi~~~a~al~~~G~--~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i 209 (376)
.+++|+.+|.||....... ...++.+++.+.++.+...+. ..|.||||+.--..+ .+.+.++++.+++..|..
T Consensus 4 ~t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~GGEPll~~~--~~~l~~~i~~~~~~~~~~ 81 (119)
T PF13394_consen 4 RTSGCNLRCSYCYNKSSWSPKKGEEMSIEELEEIIDELKEKGFRPSTVVFTGGEPLLYLN--PEDLIELIEYLKERGPEI 81 (119)
T ss_dssp --S--S---TTTS-TTTSST-GGGS--HHHHHHHHHHHHHTT----EEEEESSSGGGSTT--HHHHHHHHCTSTT-----
T ss_pred ccCCcCCCCccCCcCccCCCccCCcccHhHHHHHHHHHHhcCCceEEEEEECCCCccccC--HHHHHHHHHHHHhhCCCc
Confidence 4789999999999754221 124788899999888888877 679999987321122 456889999998887778
Q ss_pred EEEEecC
Q 017179 210 LIEALVP 216 (376)
Q Consensus 210 ~Ie~l~p 216 (376)
.|.+.+-
T Consensus 82 ~i~i~TN 88 (119)
T PF13394_consen 82 KIRIETN 88 (119)
T ss_dssp EEEEEE-
T ss_pred eEEEEeC
Confidence 8877774
|
|
| >TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00034 Score=61.96 Aligned_cols=96 Identities=13% Similarity=0.140 Sum_probs=63.6
Q ss_pred EEEEeeeCCccCCCCcCCCCCCC-CC--CCCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhh
Q 017179 129 TATIMILGDTCTRGCRFCNVKTS-RA--PPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~-r~--~~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~ 205 (376)
..++++.-.+|+.+|.||.-+.. .. ...++.+++.+.++... ..+..|+||||+ +- .+.+.++++.+++.
T Consensus 15 ~~~~~vfl~GCnlrC~~C~n~~~~~~~~g~~lt~eel~~~I~~~~-~~~~gVt~SGGE---l~---~~~l~~ll~~lk~~ 87 (147)
T TIGR02826 15 EYSLAFYITGCPLGCKGCHSPESWHLSEGTKLTPEYLTKTLDKYR-SLISCVLFLGGE---WN---REALLSLLKIFKEK 87 (147)
T ss_pred CEEEEEEeCCCCCCCCCCCChHHcCCCCCcCCCHHHHHHHHHHhC-CCCCEEEEechh---cC---HHHHHHHHHHHHHC
Confidence 45555566799999999987743 21 23588999988877754 236899999998 22 45688999999876
Q ss_pred CCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 206 KPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 206 ~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
++.+.+.+... .++..+.+.+. +|.+
T Consensus 88 --Gl~i~l~Tg~~--~~~~~~~il~~-iD~l 113 (147)
T TIGR02826 88 --GLKTCLYTGLE--PKDIPLELVQH-LDYL 113 (147)
T ss_pred --CCCEEEECCCC--CHHHHHHHHHh-CCEE
Confidence 45666566532 33344444332 4443
|
Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes. |
| >PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.003 Score=61.90 Aligned_cols=142 Identities=19% Similarity=0.268 Sum_probs=105.7
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCC-CCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD-LADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLN 234 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~d-l~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (376)
.++.++-+++++.+.+.|+++|=+++-..+. .|..+ .-.+.++.|.+ .++..+..+.+ +.+.++...++|++
T Consensus 22 ~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~--d~~e~~~~l~~-~~~~~~~~l~~----~~~~ie~A~~~g~~ 94 (287)
T PRK05692 22 FIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMA--DAAEVMAGIQR-RPGVTYAALTP----NLKGLEAALAAGAD 94 (287)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccccc--cHHHHHHhhhc-cCCCeEEEEec----CHHHHHHHHHcCCC
Confidence 4899999999999999999999988655444 33211 12567777765 46677777775 56778999999999
Q ss_pred cccccccchHH-HHHhhcCCCCCHHH----HHHHHHHHHHhCCCCceEEEeEEEecC---C---CHHHHHHHHHHHHHcC
Q 017179 235 VFAHNIETVEE-LQSAVRDHRANFKQ----SLDVLMMAKDYVPAGTLTKTSIMLGCG---E---TPDQVVSTMEKVRAAG 303 (376)
Q Consensus 235 ~i~h~lEtv~~-l~~~vr~r~~t~e~----~L~vl~~ak~~~p~Gi~tkt~imvGlG---E---T~ee~~e~L~~Lrel~ 303 (376)
.+...+.+++. ...+++ .+.++ ..++++.|++ .|+.+..+|..-|| + +++.+.+..+.+.+.|
T Consensus 95 ~v~i~~~~s~~~~~~n~~---~~~~e~l~~~~~~v~~ak~---~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G 168 (287)
T PRK05692 95 EVAVFASASEAFSQKNIN---CSIAESLERFEPVAEAAKQ---AGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALG 168 (287)
T ss_pred EEEEEEecCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---cCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcC
Confidence 99888877773 444443 45665 4456777777 47888888887664 2 6789999999999999
Q ss_pred CcEEEee
Q 017179 304 VDVMTFG 310 (376)
Q Consensus 304 vd~v~~~ 310 (376)
+|.|.+.
T Consensus 169 ~d~i~l~ 175 (287)
T PRK05692 169 CYEISLG 175 (287)
T ss_pred CcEEEec
Confidence 9998873
|
|
| >TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0023 Score=65.78 Aligned_cols=78 Identities=9% Similarity=0.097 Sum_probs=64.9
Q ss_pred ChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCH-HHHHHHHHH
Q 017179 221 NNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETP-DQVVSTMEK 298 (376)
Q Consensus 221 ~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~-ee~~e~L~~ 298 (376)
+++.++++.+.+++-++..+.+.+ ++..+|- +.....+.++.++.+.+ .||.+.+.+++==|-++ +++.+|+.+
T Consensus 127 ~~~d~~RI~~~~lspl~iSVhat~p~lR~~ll-~n~~a~~il~~l~~l~~---~~I~~h~qiVlcPGiNDg~~L~~Ti~d 202 (433)
T TIGR03279 127 PPAEWQRIEQLRLSPLYVSVHATEPSLRARLL-KNPRAGLILEQLKWFQE---RRLQLHAQVVVCPGINDGKHLERTLRD 202 (433)
T ss_pred CHHHHHHHHHcCCCCEEEEEecCCHHHHHHHh-CCCCHHHHHHHHHHHHH---cCCeEEEEEEEcCCcCCHHHHHHHHHH
Confidence 467788888888888888888654 8888876 45578999999999988 57999999988778777 689999999
Q ss_pred HHHc
Q 017179 299 VRAA 302 (376)
Q Consensus 299 Lrel 302 (376)
|.++
T Consensus 203 L~~~ 206 (433)
T TIGR03279 203 LAQF 206 (433)
T ss_pred HHhh
Confidence 9988
|
Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis. |
| >TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0018 Score=57.54 Aligned_cols=69 Identities=14% Similarity=0.178 Sum_probs=50.6
Q ss_pred CccCCCCcCCCCCCCC---CCCCCCchhHHHHHHHHHHCC-CcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCC
Q 017179 137 DTCTRGCRFCNVKTSR---APPPPDPDEPTNVAEAIASWG-LDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (376)
Q Consensus 137 d~C~~~C~FC~v~~~r---~~~~l~~eEi~~~a~al~~~G-~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p 207 (376)
.+|+.+|.||.-+... ....++.+++.++++.+.+.+ +..|.||||+.-..++ .+.+.++++.+++..+
T Consensus 23 ~gCnl~C~~C~n~~~~~~~~g~~~~~~~~~~i~~~l~~~~~~~gVt~sGGEPllq~~--~~~l~~ll~~~k~~~~ 95 (154)
T TIGR02491 23 AGCKHHCEGCFNKETWNFNGGKEFTEALEKEIIRDLNDNPLIDGLTLSGGDPLYPRN--VEELIELVKKIKAEFP 95 (154)
T ss_pred CCCCCCCcCCCcccccCCCCCCcCCHHHHHHHHHHHHhcCCcCeEEEeChhhCCCCC--HHHHHHHHHHHHHhCC
Confidence 6899999999877532 123588777877788877775 6789999997432222 4678899999987654
|
This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer. |
| >cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0054 Score=59.64 Aligned_cols=145 Identities=20% Similarity=0.272 Sum_probs=104.0
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCC-CCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD-LADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLN 234 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~d-l~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (376)
.++.++-+++++++.+.|+++|-+.+.-.+. .|-. ....++++.|... ++..+.++.+ +.+.++...++|++
T Consensus 16 ~~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~--~d~~~~~~~l~~~-~~~~~~~~~~----~~~dv~~A~~~g~~ 88 (274)
T cd07938 16 FIPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQM--ADAEEVLAGLPRR-PGVRYSALVP----NLRGAERALAAGVD 88 (274)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCCCCccccccc--CCHHHHHhhcccC-CCCEEEEECC----CHHHHHHHHHcCcC
Confidence 4889999999999999999999998654433 3321 1123456666543 3577777764 56779999999999
Q ss_pred cccccccchH-HHHHhhcC-CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC-----C-CHHHHHHHHHHHHHcCCcE
Q 017179 235 VFAHNIETVE-ELQSAVRD-HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-----E-TPDQVVSTMEKVRAAGVDV 306 (376)
Q Consensus 235 ~i~h~lEtv~-~l~~~vr~-r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlG-----E-T~ee~~e~L~~Lrel~vd~ 306 (376)
.+...+-+++ -+..+++. +....+...+.++.+++ .|+.+..+++.-|| . +.+.+.+.++.+.+.+++.
T Consensus 89 ~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~---~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~~ 165 (274)
T cd07938 89 EVAVFVSASETFSQKNINCSIAESLERFEPVAELAKA---AGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLGCDE 165 (274)
T ss_pred EEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHH---CCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 9888877777 44455541 11234566677788888 57888888886663 3 5677889999999999999
Q ss_pred EEee
Q 017179 307 MTFG 310 (376)
Q Consensus 307 v~~~ 310 (376)
|.+.
T Consensus 166 i~l~ 169 (274)
T cd07938 166 ISLG 169 (274)
T ss_pred EEEC
Confidence 8873
|
3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy |
| >COG5014 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.001 Score=60.41 Aligned_cols=154 Identities=16% Similarity=0.199 Sum_probs=91.3
Q ss_pred CccCCCCcCCCCCCCCC-CC----CCCchhHHHHHHHH-HHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcE
Q 017179 137 DTCTRGCRFCNVKTSRA-PP----PPDPDEPTNVAEAI-ASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNML 210 (376)
Q Consensus 137 d~C~~~C~FC~v~~~r~-~~----~l~~eEi~~~a~al-~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~ 210 (376)
-+|+..|.||-....+. +. -++|+|+.+...++ ++.|.+.+.|+|++. - .+.+|+.++|+-+.... ..
T Consensus 49 VGCnl~CayCw~y~r~~~~~rag~f~~P~eVaeRL~ei~K~~g~d~vRiSG~EP-~---l~~EHvlevIeLl~~~t--Fv 122 (228)
T COG5014 49 VGCNLLCAYCWNYFRNLRPKRAGDFLSPEEVAERLLEISKKRGCDLVRISGAEP-I---LGREHVLEVIELLVNNT--FV 122 (228)
T ss_pred cccceeeHHhhhhhhcCCccccccccCHHHHHHHHHHHHHhcCCcEEEeeCCCc-c---ccHHHHHHHHHhccCce--EE
Confidence 48999999997653221 11 27888877665554 577999999998863 2 34689999987763311 12
Q ss_pred EEE--ecCCCCCChHHHHHHHHcCcccccccccch-HHHHHhhcCC-CCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-
Q 017179 211 IEA--LVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDH-RANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC- 285 (376)
Q Consensus 211 Ie~--l~pd~~g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~r-~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl- 285 (376)
++. +.-.| +...+++|.+----.+-..+-.. ++-|.+|..- ..-+..-|+.|+.+++ .|+.+-.-+|.||
T Consensus 123 lETNG~~~g~--drslv~el~nr~nv~vRVsvKG~dpesF~kIT~asp~~F~~QL~aLr~L~~---~g~rf~pA~~~~f~ 197 (228)
T COG5014 123 LETNGLMFGF--DRSLVDELVNRLNVLVRVSVKGWDPESFEKITGASPEYFRYQLKALRHLHG---KGHRFWPAVVYDFF 197 (228)
T ss_pred EEeCCeEEec--CHHHHHHHhcCCceEEEEEecCCCHHHHHHHhcCChHHHHHHHHHHHHHHh---cCceeeehhhhccc
Confidence 221 11112 56667777542111122334433 3667777621 1125566888888877 6888899999988
Q ss_pred CCCHHHHHHHHHHHHHcC
Q 017179 286 GETPDQVVSTMEKVRAAG 303 (376)
Q Consensus 286 GET~ee~~e~L~~Lrel~ 303 (376)
-|.-+- ++.+.|-+++
T Consensus 198 ~Ed~~k--~Lak~Lgehp 213 (228)
T COG5014 198 REDGLK--ELAKRLGEHP 213 (228)
T ss_pred hhhhHH--HHHHHhccCC
Confidence 443221 2344454544
|
|
| >COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.011 Score=59.23 Aligned_cols=196 Identities=14% Similarity=0.207 Sum_probs=110.2
Q ss_pred CCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHH-HCC------CcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhC--
Q 017179 136 GDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIA-SWG------LDYVVITSVDRDDLADQGSGHFAQTVRKLKELK-- 206 (376)
Q Consensus 136 ~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~-~~G------~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~-- 206 (376)
+-||.-+|+||+.....--.-|+..||+..+..+. ..| +..||+-|---| +..|..++.++.-..
T Consensus 108 QvGC~~~C~FCaTg~~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEP------l~N~dnV~~a~~i~~~~ 181 (349)
T COG0820 108 QVGCPVGCTFCATGQGGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEP------LLNLDNVVKALEIINDD 181 (349)
T ss_pred CCCcCCCCCeeccccccceeccCHHHHHHHHHHHHHhcCccccceeeeEEEecCCch------hhhHHHHHHHHHhhcCc
Confidence 45999999999877643222489999998877655 223 456776653222 223444555444322
Q ss_pred --CCc---EEEEecCCCCCChHHHHHHHHcCccc-ccccccchH-HHHHhhcC--CCCCHHHHHHHHHHHHHhCCCCceE
Q 017179 207 --PNM---LIEALVPDFRGNNGCVREVAKSGLNV-FAHNIETVE-ELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLT 277 (376)
Q Consensus 207 --p~i---~Ie~l~pd~~g~~e~l~~L~~aGld~-i~h~lEtv~-~l~~~vr~--r~~t~e~~L~vl~~ak~~~p~Gi~t 277 (376)
.++ +|-+.+..+ ...|.++.+..+++ ++.++.+.+ ++...+-| ++++.++.++.++.-.+.....+..
T Consensus 182 ~G~~ls~R~iTvSTsGi---~~~I~~l~~~~~~v~LAiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~~rVt~ 258 (349)
T COG0820 182 EGLGLSKRRITVSTSGI---VPRIRKLADEQLGVALAISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSGRRVTF 258 (349)
T ss_pred ccccccceEEEEecCCC---chhHHHHHhhcCCeEEEEecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccCceEEE
Confidence 112 233344333 34566676543432 455666554 77666543 5678888888888777653322333
Q ss_pred EEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhh
Q 017179 278 KTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFR 344 (376)
Q Consensus 278 kt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~ 344 (376)
-=.++=|.-.+.++-.++.+.|+.+.+ .|++-+| .|. .+... +..+-++.+...++-.+.|+.
T Consensus 259 EY~Ll~~VND~~e~A~~L~~ll~~~~~-~VNLIP~-Np~-~~~~y-~r~~~~~i~~F~~~L~~~gv~ 321 (349)
T COG0820 259 EYVLLDGVNDSLEHAKELAKLLKGIPC-KVNLIPY-NPV-PGSDY-ERSSKERIRKFLKILKKAGVL 321 (349)
T ss_pred EeeecccccCCHHHHHHHHHHhcCCCc-eEEEeec-CCC-CCCCc-cCCcHHHHHHHHHHHHhCCee
Confidence 444555667778888888888888876 4444333 342 23332 222334444444443344443
|
|
| >PLN02746 hydroxymethylglutaryl-CoA lyase | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0098 Score=59.83 Aligned_cols=142 Identities=16% Similarity=0.194 Sum_probs=102.3
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCC-CCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD-LADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLN 234 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~d-l~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (376)
.++.++-+++++.+.+.|+++|-+++.-.+. .|-. ..-.+.++.|++ .++..+.++.+ +.+.++...++|++
T Consensus 64 ~~s~e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqm--ad~~ev~~~i~~-~~~~~~~~l~~----n~~die~A~~~g~~ 136 (347)
T PLN02746 64 IVPTSVKVELIQRLVSSGLPVVEATSFVSPKWVPQL--ADAKDVMAAVRN-LEGARFPVLTP----NLKGFEAAIAAGAK 136 (347)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCcCccccccc--ccHHHHHHHHHh-ccCCceeEEcC----CHHHHHHHHHcCcC
Confidence 4899999999999999999999988654332 2321 123456666655 34555656665 67889999999999
Q ss_pred cccccccchHHHH-HhhcCCCCCHHHHH----HHHHHHHHhCCCCceEEEeEEEecC------CCHHHHHHHHHHHHHcC
Q 017179 235 VFAHNIETVEELQ-SAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIMLGCG------ETPDQVVSTMEKVRAAG 303 (376)
Q Consensus 235 ~i~h~lEtv~~l~-~~vr~r~~t~e~~L----~vl~~ak~~~p~Gi~tkt~imvGlG------ET~ee~~e~L~~Lrel~ 303 (376)
.+...+-+++... .+++ .+.++.+ ++++.+++ .|+.+..++..-|| -+.+.+++.++.+.+.|
T Consensus 137 ~v~i~~s~Sd~h~~~n~~---~t~~e~l~~~~~~v~~Ak~---~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~G 210 (347)
T PLN02746 137 EVAVFASASESFSKSNIN---CSIEESLVRYREVALAAKK---HSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMG 210 (347)
T ss_pred EEEEEEecCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---cCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcC
Confidence 9988887777433 3333 4566666 57778877 47888877765443 25677889999999999
Q ss_pred CcEEEee
Q 017179 304 VDVMTFG 310 (376)
Q Consensus 304 vd~v~~~ 310 (376)
++.|.|.
T Consensus 211 ad~I~l~ 217 (347)
T PLN02746 211 CYEISLG 217 (347)
T ss_pred CCEEEec
Confidence 9998874
|
|
| >PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0021 Score=57.20 Aligned_cols=79 Identities=15% Similarity=0.183 Sum_probs=53.2
Q ss_pred CccCCCCcCCCCCCC-C--CCCCCCchhHHHHHHHHHHCCC--cEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEE
Q 017179 137 DTCTRGCRFCNVKTS-R--APPPPDPDEPTNVAEAIASWGL--DYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLI 211 (376)
Q Consensus 137 d~C~~~C~FC~v~~~-r--~~~~l~~eEi~~~a~al~~~G~--~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~I 211 (376)
.+|+.+|.||.-+.. . .....+.+.+.++.+.+...+. ..|.||||+.- +. .....+.++++++++..|+..|
T Consensus 24 ~GCnl~C~~C~n~~~~~~~~g~~~~~~~~~~il~~~~~~~~~~~gvt~sGGEPl-~~-~~~~~l~~l~~~~k~~~~~~~i 101 (154)
T PRK11121 24 SGCVHQCPGCYNKSTWRLNSGHPFTKEMEDQIIADLNDTRIKRQGLSLSGGDPL-HP-QNVPDILKLVQRVKAECPGKDI 101 (154)
T ss_pred CCCCCcCcCCCChhhccCCCCcccCHHHHHHHHHHHHHhCCCCCcEEEECCCcc-ch-hhHHHHHHHHHHHHHHCCCCCE
Confidence 899999999966542 1 1112555555555666666655 78999999752 22 1256788999999988777666
Q ss_pred EEecCC
Q 017179 212 EALVPD 217 (376)
Q Consensus 212 e~l~pd 217 (376)
-+.++-
T Consensus 102 ~~~tGy 107 (154)
T PRK11121 102 WVWTGY 107 (154)
T ss_pred EEecCC
Confidence 556654
|
|
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.019 Score=55.40 Aligned_cols=142 Identities=16% Similarity=0.221 Sum_probs=104.2
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcC---
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSG--- 232 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aG--- 232 (376)
.++.++....++.+.+.|++.|-+.+... . ...+ +.++.+.+..|++.+.++.. ++.+.++...++|
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~---~---~~~~-~~~~~l~~~~~~~~~~~l~r---~~~~~v~~a~~~~~~~ 85 (268)
T cd07940 16 SLTPEEKLEIARQLDELGVDVIEAGFPAA---S---PGDF-EAVKRIAREVLNAEICGLAR---AVKKDIDAAAEALKPA 85 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCC---C---HHHH-HHHHHHHHhCCCCEEEEEcc---CCHhhHHHHHHhCCCC
Confidence 48899999999999999999999875321 1 1122 67888877677888887762 2456678888888
Q ss_pred -cccccccccchH-HHHHhhcC-CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEe
Q 017179 233 -LNVFAHNIETVE-ELQSAVRD-HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (376)
Q Consensus 233 -ld~i~h~lEtv~-~l~~~vr~-r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~ 309 (376)
++.+....-+++ .+...++- +....+...+.++.+++ .|+.+.-+.+.+..-+++.+.+.++.+.+++++.+.+
T Consensus 86 ~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~---~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l 162 (268)
T cd07940 86 KVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKS---HGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTINI 162 (268)
T ss_pred CCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH---cCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 888877666666 55555551 11234556678888888 4777776666666667888899999999999999887
Q ss_pred e
Q 017179 310 G 310 (376)
Q Consensus 310 ~ 310 (376)
.
T Consensus 163 ~ 163 (268)
T cd07940 163 P 163 (268)
T ss_pred C
Confidence 3
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.018 Score=55.23 Aligned_cols=139 Identities=15% Similarity=0.192 Sum_probs=103.5
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
.++.++..+.++.+.+.|+++|-+.. +...+ . -.+.++.|.+..++..+-.+.. .+.+.++...++|++.
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iE~g~---p~~~~---~-~~e~~~~l~~~~~~~~~~~~~r---~~~~~v~~a~~~g~~~ 85 (259)
T cd07939 16 AFSREEKLAIARALDEAGVDEIEVGI---PAMGE---E-EREAIRAIVALGLPARLIVWCR---AVKEDIEAALRCGVTA 85 (259)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEec---CCCCH---H-HHHHHHHHHhcCCCCEEEEecc---CCHHHHHHHHhCCcCE
Confidence 48999999999999999999998852 22221 1 1356777776556666665542 2567788899999999
Q ss_pred ccccccchH-HHHHhhcCCCCCHHH----HHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 236 FAHNIETVE-ELQSAVRDHRANFKQ----SLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 236 i~h~lEtv~-~l~~~vr~r~~t~e~----~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
+...+-+++ .+.+.++ .+.++ ..+.++.+++ .|+.+.-+++.+..-+++.+.+.++.+.+.+++.+.+.
T Consensus 86 i~i~~~~s~~~~~~~~~---~~~~~~~~~~~~~i~~a~~---~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~ 159 (259)
T cd07939 86 VHISIPVSDIHLAHKLG---KDRAWVLDQLRRLVGRAKD---RGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFA 159 (259)
T ss_pred EEEEEecCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---CCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeC
Confidence 888777777 5555665 34444 4477788888 57878877777777789999999999999999998773
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.032 Score=53.96 Aligned_cols=139 Identities=15% Similarity=0.183 Sum_probs=100.4
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
.++.++.+++++.+.+.|+++|-+.+. ... ....+.++.+.+......+-.. ...+.+.++...++|++.
T Consensus 18 ~~s~~~k~~i~~~L~~~Gv~~IEvG~P---~~~----~~~~~~~~~l~~~~~~~~v~~~---~r~~~~di~~a~~~g~~~ 87 (262)
T cd07948 18 FFDTEDKIEIAKALDAFGVDYIELTSP---AAS----PQSRADCEAIAKLGLKAKILTH---IRCHMDDARIAVETGVDG 87 (262)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEECC---CCC----HHHHHHHHHHHhCCCCCcEEEE---ecCCHHHHHHHHHcCcCE
Confidence 489999999999999999999998862 221 2234555555443222333222 123677899999999999
Q ss_pred ccccccchHH-HHHhhcCCCCCHHH----HHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 236 FAHNIETVEE-LQSAVRDHRANFKQ----SLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 236 i~h~lEtv~~-l~~~vr~r~~t~e~----~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
+...+-+++. ....++ .+.++ ..++++.+++ .|+.+..+++-.++=+++++.+.++.+.+++++.+.+.
T Consensus 88 i~i~~~~S~~~~~~~~~---~~~~e~~~~~~~~i~~a~~---~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~ 161 (262)
T cd07948 88 VDLVFGTSPFLREASHG---KSITEIIESAVEVIEFVKS---KGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGIA 161 (262)
T ss_pred EEEEEecCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---CCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 8887777773 333333 34555 5555678877 57999999999998889999999999999999988773
|
Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th |
| >TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.032 Score=56.37 Aligned_cols=142 Identities=13% Similarity=0.199 Sum_probs=105.1
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
.++.++.+++++.+.+.|+++|-+..-.. ++ .-.+.++.|.+..+...|..+.. .+.+.++...++|++.
T Consensus 18 ~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~---~~----~~~e~i~~i~~~~~~~~v~~~~r---~~~~di~~a~~~g~~~ 87 (363)
T TIGR02090 18 SLTVEQKVEIARKLDELGVDVIEAGFPIA---SE----GEFEAIKKISQEGLNAEICSLAR---ALKKDIDKAIDCGVDS 87 (363)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCC---Ch----HHHHHHHHHHhcCCCcEEEEEcc---cCHHHHHHHHHcCcCE
Confidence 48999999999999999999998754211 11 12467777776655666665553 3678899999999999
Q ss_pred ccccccchH-HHHHhhc-CCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 236 FAHNIETVE-ELQSAVR-DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 236 i~h~lEtv~-~l~~~vr-~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
+...+-+++ .+...++ ++....+...+.++.|++ .|+.+.-+++-..--+.+.+.+.++.+.+.+++.|.+.
T Consensus 88 i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~---~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~ 161 (363)
T TIGR02090 88 IHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKE---HGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINIA 161 (363)
T ss_pred EEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH---cCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 888777777 4444554 112235666678888888 57888877776666778999999999999999998774
|
Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. |
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.052 Score=52.18 Aligned_cols=137 Identities=14% Similarity=0.126 Sum_probs=98.5
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeC-----CC--CCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDR-----DD--LADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREV 228 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r-----~d--l~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L 228 (376)
.++.++....++.+.+.|+++|-+..... .+ .+. .. =.+.++.+++..+++.+.++...-.++.+.++..
T Consensus 18 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~--~~-~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a 94 (263)
T cd07943 18 QFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAA--HT-DEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMA 94 (263)
T ss_pred ecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCC--CC-hHHHHHHHHHhccCCEEEEEecCCccCHHHHHHH
Confidence 48899999999999999999998872210 00 111 11 1346677766666777766532112256778999
Q ss_pred HHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEE
Q 017179 229 AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMT 308 (376)
Q Consensus 229 ~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~ 308 (376)
.++|+|.+....-..+ .+...+.++.+++ .|+.+..+++-...-+++.+.+.++.+.+.+++.+.
T Consensus 95 ~~~g~~~iri~~~~s~------------~~~~~~~i~~ak~---~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~ 159 (263)
T cd07943 95 ADLGVDVVRVATHCTE------------ADVSEQHIGAARK---LGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVY 159 (263)
T ss_pred HHcCCCEEEEEechhh------------HHHHHHHHHHHHH---CCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEE
Confidence 9999998766432222 2356788999998 578888888777778999999999999999999987
Q ss_pred ee
Q 017179 309 FG 310 (376)
Q Consensus 309 ~~ 310 (376)
+.
T Consensus 160 l~ 161 (263)
T cd07943 160 VT 161 (263)
T ss_pred Ec
Confidence 73
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >TIGR02660 nifV_homocitr homocitrate synthase NifV | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.036 Score=55.98 Aligned_cols=138 Identities=18% Similarity=0.263 Sum_probs=101.0
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
.++.++.+++++.+.+.|+++|-+.. +...+ .=.+.++.|.+..+...+..+. +.+.+.++...++|++.
T Consensus 19 ~~s~~~k~~ia~~L~~~Gv~~IEvG~---p~~~~----~~~e~i~~i~~~~~~~~i~~~~---r~~~~di~~a~~~g~~~ 88 (365)
T TIGR02660 19 AFTAAEKLAIARALDEAGVDELEVGI---PAMGE----EERAVIRAIVALGLPARLMAWC---RARDADIEAAARCGVDA 88 (365)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC---CCCCH----HHHHHHHHHHHcCCCcEEEEEc---CCCHHHHHHHHcCCcCE
Confidence 48999999999999999999998742 22221 1235677777665666665554 22678899999999999
Q ss_pred ccccccchH-HHHHhhcCCCCCHHHHH----HHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEe
Q 017179 236 FAHNIETVE-ELQSAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (376)
Q Consensus 236 i~h~lEtv~-~l~~~vr~r~~t~e~~L----~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~ 309 (376)
+...+-+++ .+..+++ .+.++.+ +.++.|++ .|+.+.-+.+-+.--+.+.+.+.++.+.+.+++.+.+
T Consensus 89 i~i~~~~Sd~~~~~~~~---~s~~e~l~~~~~~i~~ak~---~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l 161 (365)
T TIGR02660 89 VHISIPVSDLQIEAKLR---KDRAWVLERLARLVSFARD---RGLFVSVGGEDASRADPDFLVELAEVAAEAGADRFRF 161 (365)
T ss_pred EEEEEccCHHHHHHHhC---cCHHHHHHHHHHHHHHHHh---CCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEE
Confidence 888877777 4555554 3455555 77788887 4777776666655566888899999999999999877
|
This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase. |
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.054 Score=54.28 Aligned_cols=138 Identities=15% Similarity=0.195 Sum_probs=100.6
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCC---CCCccc--HHHHHHHHHHHHhhCCCcEEEE-ecCCCCCChHHHHHHH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRD---DLADQG--SGHFAQTVRKLKELKPNMLIEA-LVPDFRGNNGCVREVA 229 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~---dl~d~g--~~~~~elvr~Ik~~~p~i~Ie~-l~pd~~g~~e~l~~L~ 229 (376)
.++.++...+++++.+.|++.|-++-++.- .+ +.| ...=.+.++.+.+..++..+.+ +.|.+ ++.+.++...
T Consensus 21 ~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~-~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~-~~~~dl~~a~ 98 (337)
T PRK08195 21 QYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSF-NYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGI-GTVDDLKMAY 98 (337)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccc-cCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCc-ccHHHHHHHH
Confidence 489999999999999999999999744310 00 000 0001356677766566777776 44543 3677889999
Q ss_pred HcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEe
Q 017179 230 KSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (376)
Q Consensus 230 ~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~ 309 (376)
++|+|.+....- ....+...+.++.+|+ .|+.+...+|....-+++++.+.++.+.+.+++.|.+
T Consensus 99 ~~gvd~iri~~~------------~~e~~~~~~~i~~ak~---~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i 163 (337)
T PRK08195 99 DAGVRVVRVATH------------CTEADVSEQHIGLARE---LGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYV 163 (337)
T ss_pred HcCCCEEEEEEe------------cchHHHHHHHHHHHHH---CCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEe
Confidence 999998755321 1223567888999999 5788988898888889999999999999999999877
Q ss_pred e
Q 017179 310 G 310 (376)
Q Consensus 310 ~ 310 (376)
.
T Consensus 164 ~ 164 (337)
T PRK08195 164 V 164 (337)
T ss_pred C
Confidence 3
|
|
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.042 Score=53.18 Aligned_cols=140 Identities=19% Similarity=0.219 Sum_probs=98.4
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHH--HHHHHHHHhhC-CCcEEEEecCCCCCChHHHHHHHHcC
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHF--AQTVRKLKELK-PNMLIEALVPDFRGNNGCVREVAKSG 232 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~--~elvr~Ik~~~-p~i~Ie~l~pd~~g~~e~l~~L~~aG 232 (376)
.++.++..++++.+.+.|+++|=+.-.....-...|...| .+.+++|.+.. ++..+.++.-....+.+.++...+.|
T Consensus 16 ~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g 95 (266)
T cd07944 16 DFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASGSV 95 (266)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHhcCC
Confidence 3899999999999999999999876221110000000000 23444444332 35677665533323567788888888
Q ss_pred cccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 233 LNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 233 ld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
++.+.... +....++.++.++.+++ .|+.+..+++-.++-+++.+.+.++.+.+.+++.+.+.
T Consensus 96 v~~iri~~------------~~~~~~~~~~~i~~ak~---~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~ 158 (266)
T cd07944 96 VDMIRVAF------------HKHEFDEALPLIKAIKE---KGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIV 158 (266)
T ss_pred cCEEEEec------------ccccHHHHHHHHHHHHH---CCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 88765532 23468888999999998 47889999999999999999999999999999998874
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >PRK11858 aksA trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.047 Score=55.51 Aligned_cols=139 Identities=17% Similarity=0.202 Sum_probs=101.4
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
.++.++..++++.+.+.|+++|-+.. +...+ .-.+.++.|.+......+-++.. ...+.++...++|++.
T Consensus 22 ~~s~e~k~~ia~~L~~~GV~~IE~G~---p~~~~----~~~e~i~~i~~~~~~~~i~~~~r---~~~~di~~a~~~g~~~ 91 (378)
T PRK11858 22 VFTNEEKLAIARMLDEIGVDQIEAGF---PAVSE----DEKEAIKAIAKLGLNASILALNR---AVKSDIDASIDCGVDA 91 (378)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEeC---CCcCh----HHHHHHHHHHhcCCCeEEEEEcc---cCHHHHHHHHhCCcCE
Confidence 48999999999999999999998642 22222 12456777766443444444432 1467789999999999
Q ss_pred ccccccchH-HHHHhhcCCCCCHHHHHH----HHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 236 FAHNIETVE-ELQSAVRDHRANFKQSLD----VLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 236 i~h~lEtv~-~l~~~vr~r~~t~e~~L~----vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
+...+.+++ .+..+++ .+.++.++ .++.|++ .|+.+..+.+-+.--+.+.+.+.++.+.+.+++.|.+.
T Consensus 92 i~i~~~~Sd~h~~~~~~---~s~~~~l~~~~~~v~~a~~---~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~ 165 (378)
T PRK11858 92 VHIFIATSDIHIKHKLK---KTREEVLERMVEAVEYAKD---HGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRFC 165 (378)
T ss_pred EEEEEcCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---CCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 888888877 4555554 45666655 7777777 47777777777777789999999999999999998774
|
|
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.07 Score=53.44 Aligned_cols=136 Identities=14% Similarity=0.187 Sum_probs=99.1
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeC-----CC--CCcccHHHHHHHHHHHHhhCCCcEEEE-ecCCCCCChHHHHH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDR-----DD--LADQGSGHFAQTVRKLKELKPNMLIEA-LVPDFRGNNGCVRE 227 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r-----~d--l~d~g~~~~~elvr~Ik~~~p~i~Ie~-l~pd~~g~~e~l~~ 227 (376)
.++.++...+++++.+.|++.|-++-++. -+ .+- ... .+.++++.+..++..+.+ +.|.. ++.+.++.
T Consensus 20 ~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~--~~~-~e~i~~~~~~~~~~~~~~ll~pg~-~~~~dl~~ 95 (333)
T TIGR03217 20 QFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSA--HTD-LEYIEAAADVVKRAKVAVLLLPGI-GTVHDLKA 95 (333)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCC--CCh-HHHHHHHHHhCCCCEEEEEeccCc-cCHHHHHH
Confidence 48899999999999999999999984321 00 110 111 244555555555677764 44543 36788999
Q ss_pred HHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEE
Q 017179 228 VAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVM 307 (376)
Q Consensus 228 L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v 307 (376)
..++|+|.+..... ....+...+.++.+|+ .|+.+...+|..+.-+++++.+.++.+.+.+++.|
T Consensus 96 a~~~gvd~iri~~~------------~~e~d~~~~~i~~ak~---~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i 160 (333)
T TIGR03217 96 AYDAGARTVRVATH------------CTEADVSEQHIGMARE---LGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCV 160 (333)
T ss_pred HHHCCCCEEEEEec------------cchHHHHHHHHHHHHH---cCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEE
Confidence 99999998765421 1223567788999998 57888888988888899999999999999999998
Q ss_pred Eee
Q 017179 308 TFG 310 (376)
Q Consensus 308 ~~~ 310 (376)
.+.
T Consensus 161 ~i~ 163 (333)
T TIGR03217 161 YIV 163 (333)
T ss_pred EEc
Confidence 774
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >PF00682 HMGL-like: HMGL-like of this family is not conserved in other members | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.051 Score=51.04 Aligned_cols=143 Identities=17% Similarity=0.239 Sum_probs=92.0
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecC-CCCCChHHHHHHHHcCcc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVP-DFRGNNGCVREVAKSGLN 234 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~p-d~~g~~e~l~~L~~aGld 234 (376)
.++.++..+.++.+.+.|+++|-+... ...+ . -.+.++.+.+..+...+..+.. ........++.++++|++
T Consensus 10 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~---~~~~---~-~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~ 82 (237)
T PF00682_consen 10 AFSTEEKLEIAKALDEAGVDYIEVGFP---FASE---D-DFEQVRRLREALPNARLQALCRANEEDIERAVEAAKEAGID 82 (237)
T ss_dssp T--HHHHHHHHHHHHHHTTSEEEEEHC---TSSH---H-HHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHHHTTSS
T ss_pred CcCHHHHHHHHHHHHHhCCCEEEEccc---ccCH---H-HHHHhhhhhhhhcccccceeeeehHHHHHHHHHhhHhccCC
Confidence 378899999999999999999987611 1111 1 1234444444444455554433 111013335556679999
Q ss_pred cccccccchHHHHHhhcCCCCCHH----HHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 235 VFAHNIETVEELQSAVRDHRANFK----QSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 235 ~i~h~lEtv~~l~~~vr~r~~t~e----~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
.+...+..++...+... +.+.+ ...+.++.+++ .|+.+.-+++-...-+++++.+.++.+.+++++.|.+.
T Consensus 83 ~i~i~~~~s~~~~~~~~--~~~~~~~~~~~~~~v~~ak~---~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~ 157 (237)
T PF00682_consen 83 IIRIFISVSDLHIRKNL--NKSREEALERIEEAVKYAKE---LGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLA 157 (237)
T ss_dssp EEEEEEETSHHHHHHHT--CSHHHHHHHHHHHHHHHHHH---TTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEE
T ss_pred EEEecCcccHHHHHHhh--cCCHHHHHHHHHHHHHHHHh---cCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEee
Confidence 99888777773333322 34544 44566677777 47778777766667789999999999999999999884
|
are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A .... |
| >PRK09389 (R)-citramalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.13 Score=54.10 Aligned_cols=138 Identities=15% Similarity=0.190 Sum_probs=97.5
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
.++.++-+++++.+.+.|+++|-+.+--. + ... .+.++.|.+......|..+..- ..+.++...++|++.
T Consensus 20 ~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~---~---~~d-~e~v~~i~~~~~~~~i~a~~r~---~~~di~~a~~~g~~~ 89 (488)
T PRK09389 20 SLTPEEKLEIARKLDELGVDVIEAGSAIT---S---EGE-REAIKAVTDEGLNAEICSFARA---VKVDIDAALECDVDS 89 (488)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEeCCcC---C---HHH-HHHHHHHHhcCCCcEEEeeccc---CHHHHHHHHhCCcCE
Confidence 58999999999999999999998754321 1 111 3456677655445666665543 356688899999999
Q ss_pred ccccccchHH-HHHhhcCCCCCHHHHH----HHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEe
Q 017179 236 FAHNIETVEE-LQSAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (376)
Q Consensus 236 i~h~lEtv~~-l~~~vr~r~~t~e~~L----~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~ 309 (376)
+...+-+++. +..+++ .+.++.+ +.++.|++ .|+.+.-+++-+.--+.+.+.+.++.+.+.+.+.+.+
T Consensus 90 v~i~~~~Sd~h~~~~l~---~s~~e~l~~~~~~v~~ak~---~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l 162 (488)
T PRK09389 90 VHLVVPTSDLHIEYKLK---KTREEVLETAVEAVEYAKD---HGLIVELSGEDASRADLDFLKELYKAGIEAGADRICF 162 (488)
T ss_pred EEEEEccCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---CCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 8887777773 333433 3555544 55566766 4677777777665555677779999999999999877
|
|
| >cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.22 Score=48.58 Aligned_cols=140 Identities=16% Similarity=0.253 Sum_probs=95.5
Q ss_pred CCCchhHHHHHHHH-HHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhC------CCcEEEEecCCCCCChHHHHHH
Q 017179 156 PPDPDEPTNVAEAI-ASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK------PNMLIEALVPDFRGNNGCVREV 228 (376)
Q Consensus 156 ~l~~eEi~~~a~al-~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~------p~i~Ie~l~pd~~g~~e~l~~L 228 (376)
.++.++-+++++.+ .+.|+++|=+++-- .. .+.+ +.++++.+.. +++.+-++.+ +...++..
T Consensus 15 ~~s~e~K~~i~~~L~~~~Gv~~IEvg~~~---~s---~~e~-~av~~~~~~~~~~~~~~~~~~~a~~~----~~~~~~~A 83 (280)
T cd07945 15 SFSPSEKLNIAKILLQELKVDRIEVASAR---VS---EGEF-EAVQKIIDWAAEEGLLDRIEVLGFVD----GDKSVDWI 83 (280)
T ss_pred ccCHHHHHHHHHHHHHHhCCCEEEecCCC---CC---HHHH-HHHHHHHHHhhhhccccCcEEEEecC----cHHHHHHH
Confidence 48999999999996 77899999887631 11 1112 4555554321 2345544554 44568889
Q ss_pred HHcCcccccccccchH-HHHHhhcC-CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC----CCHHHHHHHHHHHHHc
Q 017179 229 AKSGLNVFAHNIETVE-ELQSAVRD-HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG----ETPDQVVSTMEKVRAA 302 (376)
Q Consensus 229 ~~aGld~i~h~lEtv~-~l~~~vr~-r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlG----ET~ee~~e~L~~Lrel 302 (376)
+++|++.+...+-+++ ....+++. +....++..++++.+++ .|+.+..+++- +| -+.+.+.+.++.+.+.
T Consensus 84 ~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~---~G~~v~~~~~d-~~~~~r~~~~~~~~~~~~~~~~ 159 (280)
T cd07945 84 KSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIK---NGIEVNIYLED-WSNGMRDSPDYVFQLVDFLSDL 159 (280)
T ss_pred HHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHh---CCCEEEEEEEe-CCCCCcCCHHHHHHHHHHHHHc
Confidence 9999999888887777 55555541 12233444566777777 47888877775 55 3688889999999999
Q ss_pred CCcEEEee
Q 017179 303 GVDVMTFG 310 (376)
Q Consensus 303 ~vd~v~~~ 310 (376)
|++.|.+.
T Consensus 160 G~~~i~l~ 167 (280)
T cd07945 160 PIKRIMLP 167 (280)
T ss_pred CCCEEEec
Confidence 99998874
|
Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con |
| >COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.036 Score=51.96 Aligned_cols=70 Identities=19% Similarity=0.266 Sum_probs=42.8
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCC------CCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHH
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAP------PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKL 202 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~------~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~I 202 (376)
-+-|+-+ .||+.+|.||.-+.+-.+ ..++.+||++.++.+. .+.+.|+||||+. -+. ..+.++++.+
T Consensus 23 ~~vFVR~-~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~-~~~~~V~lTGGEP-~~~----~~l~~Ll~~l 95 (212)
T COG0602 23 PSVFVRF-AGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLG-YKARGVSLTGGEP-LLQ----PNLLELLELL 95 (212)
T ss_pred eeEEEEc-CCCCCCCCCCCChhhhcccccCCCCccCHHHHHHHHHhcC-CCcceEEEeCCcC-CCc----ccHHHHHHHH
Confidence 4555554 599999999986643211 2355666655554321 2456999999986 222 1256677777
Q ss_pred Hhh
Q 017179 203 KEL 205 (376)
Q Consensus 203 k~~ 205 (376)
++.
T Consensus 96 ~~~ 98 (212)
T COG0602 96 KRL 98 (212)
T ss_pred HhC
Confidence 654
|
|
| >PRK00915 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.22 Score=52.73 Aligned_cols=138 Identities=12% Similarity=0.129 Sum_probs=94.7
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHH----HHHHc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVR----EVAKS 231 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~----~L~~a 231 (376)
.++.++-+++++.+.+.|+++|-+...- .. ... .+.++.|.+..++..|.++..- ..+.++ .++++
T Consensus 22 ~~s~e~K~~ia~~L~~~Gv~~IE~G~p~---~s---~~d-~~~v~~i~~~~~~~~i~a~~r~---~~~did~a~~a~~~~ 91 (513)
T PRK00915 22 SLTVEEKLQIAKQLERLGVDVIEAGFPA---SS---PGD-FEAVKRIARTVKNSTVCGLARA---VKKDIDAAAEALKPA 91 (513)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCC---CC---hHH-HHHHHHHHhhCCCCEEEEEccC---CHHHHHHHHHHhhcC
Confidence 4899999999999999999999875421 11 111 2345777665566777776631 233344 44478
Q ss_pred CcccccccccchH-HHHHhhcCCCCCHHHHH----HHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcE
Q 017179 232 GLNVFAHNIETVE-ELQSAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDV 306 (376)
Q Consensus 232 Gld~i~h~lEtv~-~l~~~vr~r~~t~e~~L----~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~ 306 (376)
|.+.+...+-+++ .+...++ .+.++.+ +.++.|++ .|+.+.-+.+-+.--+.+.+.+.++.+.+.+++.
T Consensus 92 ~~~~v~i~~~~Sd~h~~~~l~---~s~~e~l~~~~~~v~~ak~---~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~ 165 (513)
T PRK00915 92 EAPRIHTFIATSPIHMEYKLK---MSREEVLEMAVEAVKYARS---YTDDVEFSAEDATRTDLDFLCRVVEAAIDAGATT 165 (513)
T ss_pred CCCEEEEEECCcHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---CCCeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 8888888777777 5555554 4566655 67777777 4676665555444445677889999999999998
Q ss_pred EEe
Q 017179 307 MTF 309 (376)
Q Consensus 307 v~~ 309 (376)
+.+
T Consensus 166 i~l 168 (513)
T PRK00915 166 INI 168 (513)
T ss_pred EEE
Confidence 877
|
|
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.32 Score=46.23 Aligned_cols=158 Identities=8% Similarity=0.028 Sum_probs=98.0
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.|+..+.+.++.+.+.|++++++-=-|..-.|...+. ..+|+.|++..| +.+++.+-+ ..+.++.++++|+|.+
T Consensus 22 ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVPNitfG--p~~i~~i~~~~~-~DvHLMv~~---P~~~i~~~~~aGad~I 95 (228)
T PRK08091 22 SNWLKFNETLTTLSENQLRLLHFDIADGQFSPFFTVG--AIAIKQFPTHCF-KDVHLMVRD---QFEVAKACVAAGADIV 95 (228)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccC--HHHHHHhCCCCC-EEEEeccCC---HHHHHHHHHHhCCCEE
Confidence 5667888899999999999999865554333331111 345666654334 555655532 2457899999999999
Q ss_pred cccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCC
Q 017179 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPS 316 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~ 316 (376)
....|... +..++|+.+|+ .|+.+++++.+.-+-..+++...+.. +|.|.+-. ..|+
T Consensus 96 t~H~Ea~~--------------~~~~~l~~Ik~---~g~~~kaGlalnP~Tp~~~i~~~l~~-----vD~VLiMt-V~PG 152 (228)
T PRK08091 96 TLQVEQTH--------------DLALTIEWLAK---QKTTVLIGLCLCPETPISLLEPYLDQ-----IDLIQILT-LDPR 152 (228)
T ss_pred EEcccCcc--------------cHHHHHHHHHH---CCCCceEEEEECCCCCHHHHHHHHhh-----cCEEEEEE-ECCC
Confidence 99888532 12356667777 46667999999998777777665553 55554421 1465
Q ss_pred CCCCCCcccCChHHHHHHHHHHHHHhhh
Q 017179 317 KRHMPVSEYITPEAFERYRALGMEMGFR 344 (376)
Q Consensus 317 ~~~~~v~~~v~pe~~~~l~~~a~~~gf~ 344 (376)
..+-+..+. .-++..+++++-.+.|+.
T Consensus 153 fgGQ~f~~~-~l~KI~~lr~~~~~~~~~ 179 (228)
T PRK08091 153 TGTKAPSDL-ILDRVIQVENRLGNRRVE 179 (228)
T ss_pred CCCccccHH-HHHHHHHHHHHHHhcCCC
Confidence 444332211 124556666665555554
|
|
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.4 Score=46.57 Aligned_cols=139 Identities=17% Similarity=0.186 Sum_probs=93.4
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCC--CCcccHHHHHHHHHHHHhhCCCcEEEEecC-----CCC-----CChH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD--LADQGSGHFAQTVRKLKELKPNMLIEALVP-----DFR-----GNNG 223 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~d--l~d~g~~~~~elvr~Ik~~~p~i~Ie~l~p-----d~~-----g~~e 223 (376)
.++.+|.++++..+.+.|++.|-+.++-..+ +...+.+. .+.++.+.+..|+..+.++.- .+. ..++
T Consensus 17 ~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~-~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~ 95 (275)
T cd07937 17 RMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDP-WERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVEL 95 (275)
T ss_pred eccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCH-HHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHH
Confidence 3789999999999999999999887643111 00001111 356677776666666654432 110 1466
Q ss_pred HHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec--CCCHHHHHHHHHHHHH
Q 017179 224 CVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC--GETPDQVVSTMEKVRA 301 (376)
Q Consensus 224 ~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl--GET~ee~~e~L~~Lre 301 (376)
.++...++|++.+....- ..+.+...+.++.+++ .|+.+..+++.-. .-+++.+.+.++.+.+
T Consensus 96 di~~~~~~g~~~iri~~~------------~~~~~~~~~~i~~ak~---~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~ 160 (275)
T cd07937 96 FVEKAAKNGIDIFRIFDA------------LNDVRNLEVAIKAVKK---AGKHVEGAICYTGSPVHTLEYYVKLAKELED 160 (275)
T ss_pred HHHHHHHcCCCEEEEeec------------CChHHHHHHHHHHHHH---CCCeEEEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 678888888887655322 2336777889999998 4777766665433 4567888899999999
Q ss_pred cCCcEEEee
Q 017179 302 AGVDVMTFG 310 (376)
Q Consensus 302 l~vd~v~~~ 310 (376)
.+++.|.+.
T Consensus 161 ~Ga~~i~l~ 169 (275)
T cd07937 161 MGADSICIK 169 (275)
T ss_pred cCCCEEEEc
Confidence 999998884
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.92 Score=43.98 Aligned_cols=145 Identities=14% Similarity=0.192 Sum_probs=92.1
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhC-CCcEEEEe----cCCCC-CChHHHHHHH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK-PNMLIEAL----VPDFR-GNNGCVREVA 229 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~-p~i~Ie~l----~pd~~-g~~e~l~~L~ 229 (376)
.++.++..+.++++.+.|+++|-+.+.--. + .-.+.++.+.+.. ++..+-.+ .+++. .++..++.+.
T Consensus 16 ~~s~e~k~~i~~~L~~~Gv~~IE~G~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~ 88 (273)
T cd07941 16 SFSVEDKLRIARKLDELGVDYIEGGWPGSN--P-----KDTEFFARAKKLKLKHAKLAAFGSTRRAGVKAEEDPNLQALL 88 (273)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecCCcCC--H-----HHHHHHHHHHHcCCCCcEEEEEecccccCCCccchHHHHHHH
Confidence 489999999999999999999998653110 1 1133455554432 23333322 12221 1345688899
Q ss_pred HcCcccccccccchH-HHHHhhc-CCCCCHHHHHHHHHHHHHhCCCCceEEEeEE---EecCCCHHHHHHHHHHHHHcCC
Q 017179 230 KSGLNVFAHNIETVE-ELQSAVR-DHRANFKQSLDVLMMAKDYVPAGTLTKTSIM---LGCGETPDQVVSTMEKVRAAGV 304 (376)
Q Consensus 230 ~aGld~i~h~lEtv~-~l~~~vr-~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~im---vGlGET~ee~~e~L~~Lrel~v 304 (376)
++|++.+...+-+++ .+...++ ++....+...+.++.+++ .|+.+..+.| -|.--+.+.+.+.++.+.+.++
T Consensus 89 ~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~---~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~ 165 (273)
T cd07941 89 EAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKS---HGREVIFDAEHFFDGYKANPEYALATLKAAAEAGA 165 (273)
T ss_pred hCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHH---cCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCCC
Confidence 999998877666666 3444443 112345555667778887 4676666544 2333467777899999999999
Q ss_pred cEEEee
Q 017179 305 DVMTFG 310 (376)
Q Consensus 305 d~v~~~ 310 (376)
+.+.+.
T Consensus 166 ~~i~l~ 171 (273)
T cd07941 166 DWLVLC 171 (273)
T ss_pred CEEEEe
Confidence 988773
|
Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in |
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.7 Score=49.88 Aligned_cols=139 Identities=18% Similarity=0.220 Sum_probs=93.5
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCC--cccHHHHHHHHHHHHhhCCCcEEEEec--CCCCC--------ChH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA--DQGSGHFAQTVRKLKELKPNMLIEALV--PDFRG--------NNG 223 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~--d~g~~~~~elvr~Ik~~~p~i~Ie~l~--pd~~g--------~~e 223 (376)
.++.++.+.++.++.+.|+..|-+.||..-|.. -. .+.-.+.++.+++..|++.+.++. ++..| ..+
T Consensus 22 r~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl-~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~ 100 (592)
T PRK09282 22 RMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYL-NEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEK 100 (592)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccC-CccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHH
Confidence 378899999999999999999999887532210 00 012346678888888888888773 33333 245
Q ss_pred HHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC--CCHHHHHHHHHHHHH
Q 017179 224 CVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG--ETPDQVVSTMEKVRA 301 (376)
Q Consensus 224 ~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlG--ET~ee~~e~L~~Lre 301 (376)
.++...++|+|++....-..+ .+.....++.+++ .|..+...+-+-++ -|.+.+++.++.+.+
T Consensus 101 ~v~~A~~~Gvd~irif~~lnd------------~~n~~~~i~~ak~---~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~ 165 (592)
T PRK09282 101 FVEKAAENGIDIFRIFDALND------------VRNMEVAIKAAKK---AGAHVQGTISYTTSPVHTIEKYVELAKELEE 165 (592)
T ss_pred HHHHHHHCCCCEEEEEEecCh------------HHHHHHHHHHHHH---cCCEEEEEEEeccCCCCCHHHHHHHHHHHHH
Confidence 577888999998776433322 1334455677777 46666655533332 367888888888888
Q ss_pred cCCcEEEee
Q 017179 302 AGVDVMTFG 310 (376)
Q Consensus 302 l~vd~v~~~ 310 (376)
.|+|.|.|-
T Consensus 166 ~Gad~I~i~ 174 (592)
T PRK09282 166 MGCDSICIK 174 (592)
T ss_pred cCCCEEEEC
Confidence 888888773
|
|
| >PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.78 Score=43.37 Aligned_cols=128 Identities=19% Similarity=0.209 Sum_probs=94.0
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.+.+.+..++++....|.++|-|- .| .++|+.+++. .++.|++..= +++.+-.-.++|+|.+
T Consensus 24 Fd~~~V~~i~~AA~~ggAt~vDIA-------ad------p~LV~~~~~~-s~lPICVSaV----ep~~f~~aV~AGAdli 85 (242)
T PF04481_consen 24 FDAESVAAIVKAAEIGGATFVDIA-------AD------PELVKLAKSL-SNLPICVSAV----EPELFVAAVKAGADLI 85 (242)
T ss_pred cCHHHHHHHHHHHHccCCceEEec-------CC------HHHHHHHHHh-CCCCeEeecC----CHHHHHHHHHhCCCEE
Confidence 688899999999999999998543 12 3566666654 3566765442 4566777788999987
Q ss_pred cccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEe
Q 017179 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~ 309 (376)
.++ -.|.+|..= |..+.++.|++-++.|++.|+ +..+- -|=+.-..++-+++..+|.++|+|++--
T Consensus 86 EIG--NfDsFY~qG--r~f~a~eVL~Lt~~tR~LLP~-~~LsV--TVPHiL~ld~Qv~LA~~L~~~GaDiIQT 151 (242)
T PF04481_consen 86 EIG--NFDSFYAQG--RRFSAEEVLALTRETRSLLPD-ITLSV--TVPHILPLDQQVQLAEDLVKAGADIIQT 151 (242)
T ss_pred Eec--chHHHHhcC--CeecHHHHHHHHHHHHHhCCC-CceEE--ecCccccHHHHHHHHHHHHHhCCcEEEc
Confidence 554 346777763 578999999999999999987 54333 3344457788889999999999998743
|
As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis. |
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=1.2 Score=46.49 Aligned_cols=136 Identities=15% Similarity=0.204 Sum_probs=91.4
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCC-----CCcccHHHHHHHHHHHHhhCCCcEEEEec--CCCCC--------
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD-----LADQGSGHFAQTVRKLKELKPNMLIEALV--PDFRG-------- 220 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~d-----l~d~g~~~~~elvr~Ik~~~p~i~Ie~l~--pd~~g-------- 220 (376)
.++.++.+.+++++.+.|+..|-++||..-| +.+. =.+.++.|++..|++.+..+. +++.|
T Consensus 22 ~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~----p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddv 97 (448)
T PRK12331 22 RMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNED----PWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDV 97 (448)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCC----HHHHHHHHHHhCCCCEEEEEeccccccccccCchhh
Confidence 4789999999999999999999998885332 1111 246778888777888877433 22222
Q ss_pred ChHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC--CCHHHHHHHHHH
Q 017179 221 NNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG--ETPDQVVSTMEK 298 (376)
Q Consensus 221 ~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlG--ET~ee~~e~L~~ 298 (376)
..+.++...++|+|++....-..+ + +...+.++.+++ .|+.+...|-.-++ -+.+-+.+..+.
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd-~-----------~n~~~~v~~ak~---~G~~v~~~i~~t~~p~~~~~~~~~~a~~ 162 (448)
T PRK12331 98 VESFVQKSVENGIDIIRIFDALND-V-----------RNLETAVKATKK---AGGHAQVAISYTTSPVHTIDYFVKLAKE 162 (448)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCc-H-----------HHHHHHHHHHHH---cCCeEEEEEEeecCCCCCHHHHHHHHHH
Confidence 245678888999998877543333 1 123446778887 46555444333333 256778888888
Q ss_pred HHHcCCcEEEee
Q 017179 299 VRAAGVDVMTFG 310 (376)
Q Consensus 299 Lrel~vd~v~~~ 310 (376)
+.+.|+|.|.|.
T Consensus 163 l~~~Gad~I~i~ 174 (448)
T PRK12331 163 MQEMGADSICIK 174 (448)
T ss_pred HHHcCCCEEEEc
Confidence 999999888773
|
|
| >COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.44 Score=49.11 Aligned_cols=141 Identities=18% Similarity=0.238 Sum_probs=97.2
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCC---CcEEEEecCCCCCChHHHHHHHHcC
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP---NMLIEALVPDFRGNNGCVREVAKSG 232 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p---~i~Ie~l~pd~~g~~e~l~~L~~aG 232 (376)
+++.++-++++++|.++|+++|-.....-. .+ -.+.++.|....+ ...+.++.++ ....++.+.++|
T Consensus 20 ~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~~s---~~----~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~ea~~~a~ 89 (409)
T COG0119 20 SFSVEEKIRIAKALDDLGVDYIEAGFPVAS---PG----DFEFVRAIAEKAGLFICALIAALARA---IKRDIEALLEAG 89 (409)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeCCcCC---hh----hHHHHHHHHHhcCcccchhhhhhHHh---HHhhHHHHHhCC
Confidence 589999999999999999999987654321 11 1234444442222 2233333333 355789999999
Q ss_pred cccccccccchH-HHHHhhc-CCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEe
Q 017179 233 LNVFAHNIETVE-ELQSAVR-DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (376)
Q Consensus 233 ld~i~h~lEtv~-~l~~~vr-~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~ 309 (376)
.+.+...+-+++ -+...++ .+....+...++++.|++ .|+.+.-+..-.+.-+.+.+.+.++.+.+.|++.|.+
T Consensus 90 ~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~---~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~ga~~i~l 165 (409)
T COG0119 90 VDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARD---HGLEVRFSAEDATRTDPEFLAEVVKAAIEAGADRINL 165 (409)
T ss_pred CCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH---cCCeEEEEeeccccCCHHHHHHHHHHHHHcCCcEEEE
Confidence 999888888887 4433332 122334445556677777 4677777777777888899999999999999999988
|
|
| >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=94.63 E-value=1.1 Score=48.26 Aligned_cols=138 Identities=17% Similarity=0.188 Sum_probs=92.3
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCC--CcccHHHHHHHHHHHHhhCCCcEEEEec--CCCCC--------ChH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDL--ADQGSGHFAQTVRKLKELKPNMLIEALV--PDFRG--------NNG 223 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl--~d~g~~~~~elvr~Ik~~~p~i~Ie~l~--pd~~g--------~~e 223 (376)
.++.++.+.+++++.+.|+..|-+.||..-|. .-.+. .=.+.++.|++..|++.+..|. +...| ..+
T Consensus 17 ~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e-~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~ 95 (582)
T TIGR01108 17 RMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNE-DPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVER 95 (582)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCC-CHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHH
Confidence 47899999999999999999999988754331 10011 1246788888877888888873 33322 244
Q ss_pred HHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec--CCCHHHHHHHHHHHHH
Q 017179 224 CVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC--GETPDQVVSTMEKVRA 301 (376)
Q Consensus 224 ~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl--GET~ee~~e~L~~Lre 301 (376)
.++...++|+|++....-..+ .+.....++.+++ .|+.+...+-.-+ --|.+.+.+.++.+.+
T Consensus 96 ~v~~a~~~Gvd~irif~~lnd------------~~n~~~~i~~ak~---~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~ 160 (582)
T TIGR01108 96 FVKKAVENGMDVFRIFDALND------------PRNLQAAIQAAKK---HGAHAQGTISYTTSPVHTLETYLDLAEELLE 160 (582)
T ss_pred HHHHHHHCCCCEEEEEEecCc------------HHHHHHHHHHHHH---cCCEEEEEEEeccCCCCCHHHHHHHHHHHHH
Confidence 577788999998766533222 1334456677777 4665555443222 1367888888888888
Q ss_pred cCCcEEEe
Q 017179 302 AGVDVMTF 309 (376)
Q Consensus 302 l~vd~v~~ 309 (376)
.|+|.+.|
T Consensus 161 ~Gad~I~i 168 (582)
T TIGR01108 161 MGVDSICI 168 (582)
T ss_pred cCCCEEEE
Confidence 88888776
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane. |
| >TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type | Back alignment and domain information |
|---|
Probab=94.48 E-value=1.1 Score=47.38 Aligned_cols=138 Identities=15% Similarity=0.111 Sum_probs=92.8
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHH----Hc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVA----KS 231 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~----~a 231 (376)
+++.++-+++++.+.+.|+++|-+..-- .. ...+ +.++.|.+..+...+.++.+- ..+.++... .+
T Consensus 19 ~~s~e~K~~ia~~L~~~GV~~IEvG~p~---~s---~~d~-e~v~~i~~~~~~~~i~al~r~---~~~did~a~~al~~~ 88 (494)
T TIGR00973 19 SLTVEEKLQIALALERLGVDIIEAGFPV---SS---PGDF-EAVQRIARTVKNPRVCGLARC---VEKDIDAAAEALKPA 88 (494)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEECCC---CC---HHHH-HHHHHHHHhCCCCEEEEEcCC---CHHhHHHHHHhcccc
Confidence 4899999999999999999999764321 11 1222 445777655566777777652 234444444 44
Q ss_pred CcccccccccchH-HHHHhhcCCCCCHHHHH----HHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcE
Q 017179 232 GLNVFAHNIETVE-ELQSAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDV 306 (376)
Q Consensus 232 Gld~i~h~lEtv~-~l~~~vr~r~~t~e~~L----~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~ 306 (376)
+.+.+...+-+++ .+..+++ .+.++.+ +.++.+++ .|..+.-+..-+.--+.+.+.+.++.+.+.+++.
T Consensus 89 ~~~~v~i~~~~S~~h~~~~l~---~s~~e~l~~~~~~v~~a~~---~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~ 162 (494)
T TIGR00973 89 EKFRIHTFIATSPIHLEHKLK---MTRDEVLERAVGMVKYAKN---FTDDVEFSCEDAGRTEIPFLARIVEAAINAGATT 162 (494)
T ss_pred CCCEEEEEEccCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---cCCeEEEEcCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 6666777677777 4444443 4556655 56677777 3566666666555566788889999999999998
Q ss_pred EEe
Q 017179 307 MTF 309 (376)
Q Consensus 307 v~~ 309 (376)
+.+
T Consensus 163 i~l 165 (494)
T TIGR00973 163 INI 165 (494)
T ss_pred EEe
Confidence 887
|
A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes. |
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=94.18 E-value=1.1 Score=41.86 Aligned_cols=112 Identities=21% Similarity=0.290 Sum_probs=84.2
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.++++..+.++++.+.|++-+-||--. + .-.+.|+++++.+|++.|.+=+ -. +.+.++...++|.+.+
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit~~t----~-----~a~~~i~~l~~~~~~~~vGAGT-Vl--~~~~a~~a~~aGA~Fi 84 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVTLRT----P-----VALDAIRLLRKEVPDALIGAGT-VL--NPEQLRQAVDAGAQFI 84 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCC----c-----cHHHHHHHHHHHCCCCEEEEEe-CC--CHHHHHHHHHcCCCEE
Confidence 478999999999999999999888521 2 2467899999889987776532 11 6788999999999866
Q ss_pred cccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
|. +..+ -++++.+++ .|+..-.++| |..|+...+ +.|.+++.+|
T Consensus 85 -------------vs-P~~~----~~v~~~~~~---~~i~~iPG~~-----TptEi~~A~----~~Ga~~vKlF 128 (204)
T TIGR01182 85 -------------VS-PGLT----PELAKHAQD---HGIPIIPGVA-----TPSEIMLAL----ELGITALKLF 128 (204)
T ss_pred -------------EC-CCCC----HHHHHHHHH---cCCcEECCCC-----CHHHHHHHH----HCCCCEEEEC
Confidence 33 2332 278888888 4677777764 888887654 6799988887
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >PRK14057 epimerase; Provisional | Back alignment and domain information |
|---|
Probab=94.18 E-value=1.1 Score=43.46 Aligned_cols=155 Identities=12% Similarity=0.032 Sum_probs=93.2
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCc--ccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD--QGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLN 234 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d--~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (376)
.|+-.+.+.++.+.+.|++.+++==-|..-.|. .| .++|+.|++..| +.+++.+-+ ....++.+.++|+|
T Consensus 29 aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPNitfG----p~~i~~i~~~~p-~DvHLMV~~---P~~~i~~~~~aGad 100 (254)
T PRK14057 29 GQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVG----PWAVGQLPQTFI-KDVHLMVAD---QWTAAQACVKAGAH 100 (254)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEeccCCccCCccccC----HHHHHHhccCCC-eeEEeeeCC---HHHHHHHHHHhCCC
Confidence 566788899999999999999986555433332 13 346666765444 455555432 24568999999999
Q ss_pred cccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCce-------EEEeEEEecCCCHHHHHHHHHHHHHcCCcEE
Q 017179 235 VFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-------TKTSIMLGCGETPDQVVSTMEKVRAAGVDVM 307 (376)
Q Consensus 235 ~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~-------tkt~imvGlGET~ee~~e~L~~Lrel~vd~v 307 (376)
.+....|+.+. ..++|+.+|+ .|++ +++++-+.-+-..+.+...+. .+|.|
T Consensus 101 ~It~H~Ea~~~--------------~~~~l~~Ir~---~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~-----~vD~V 158 (254)
T PRK14057 101 CITLQAEGDIH--------------LHHTLSWLGQ---QTVPVIGGEMPVIRGISLCPATPLDVIIPILS-----DVEVI 158 (254)
T ss_pred EEEEeeccccC--------------HHHHHHHHHH---cCCCcccccccceeEEEECCCCCHHHHHHHHH-----hCCEE
Confidence 99998885321 1345555555 2432 578888888766666665554 35655
Q ss_pred EeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhh
Q 017179 308 TFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGF 343 (376)
Q Consensus 308 ~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf 343 (376)
.+- -..|+..+-+..+. .-++..+++++-.+.|+
T Consensus 159 LvM-tV~PGfgGQ~Fi~~-~l~KI~~lr~~~~~~~~ 192 (254)
T PRK14057 159 QLL-AVNPGYGSKMRSSD-LHERVAQLLCLLGDKRE 192 (254)
T ss_pred EEE-EECCCCCchhccHH-HHHHHHHHHHHHHhcCC
Confidence 442 02565444332221 12345555555445554
|
|
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.99 E-value=2.2 Score=44.79 Aligned_cols=136 Identities=16% Similarity=0.187 Sum_probs=91.0
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCC-----CCcccHHHHHHHHHHHHhhCCCcEEEEec--CCCCCC-------
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD-----LADQGSGHFAQTVRKLKELKPNMLIEALV--PDFRGN------- 221 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~d-----l~d~g~~~~~elvr~Ik~~~p~i~Ie~l~--pd~~g~------- 221 (376)
.++.++.+.+++++.+.|+..|=+.||..-| +.. .=.+.++.|++..|++.+.++. +...|-
T Consensus 21 ~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e----~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDv 96 (467)
T PRK14041 21 RMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNE----NPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDV 96 (467)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCC----CHHHHHHHHHHhCCCCEEEEEeccccccCcccccchh
Confidence 4789999999999999999999997764322 111 1246788888777888887632 232221
Q ss_pred -hHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC--CCHHHHHHHHHH
Q 017179 222 -NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG--ETPDQVVSTMEK 298 (376)
Q Consensus 222 -~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlG--ET~ee~~e~L~~ 298 (376)
...++...++|+|++....-.++ .+.....++.+++ .|..+...+-.-++ -|.+.+++..+.
T Consensus 97 v~~fv~~A~~~Gvd~irif~~lnd------------~~n~~~~i~~ak~---~G~~v~~~i~~t~~p~~t~e~~~~~a~~ 161 (467)
T PRK14041 97 VELFVKKVAEYGLDIIRIFDALND------------IRNLEKSIEVAKK---HGAHVQGAISYTVSPVHTLEYYLEFARE 161 (467)
T ss_pred hHHHHHHHHHCCcCEEEEEEeCCH------------HHHHHHHHHHHHH---CCCEEEEEEEeccCCCCCHHHHHHHHHH
Confidence 22367778899998877544433 1233455677777 35655555443333 467888888888
Q ss_pred HHHcCCcEEEee
Q 017179 299 VRAAGVDVMTFG 310 (376)
Q Consensus 299 Lrel~vd~v~~~ 310 (376)
+.+.|+|.|.|.
T Consensus 162 l~~~Gad~I~i~ 173 (467)
T PRK14041 162 LVDMGVDSICIK 173 (467)
T ss_pred HHHcCCCEEEEC
Confidence 888888888773
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=93.90 E-value=1.4 Score=41.84 Aligned_cols=162 Identities=17% Similarity=0.202 Sum_probs=93.2
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
.+|++.|+.+.+.|++++++.--+.. . |...-.++|++|.+.. .+.+.+ -+..+ +.|.++.+.++|++.+..+
T Consensus 32 ~dp~~~a~~~~~~g~~~l~ivDLd~~--~--g~~~n~~~i~~i~~~~-~~pv~v-gGGir-s~edv~~~l~~Ga~kvviG 104 (241)
T PRK14024 32 GSPLDAALAWQRDGAEWIHLVDLDAA--F--GRGSNRELLAEVVGKL-DVKVEL-SGGIR-DDESLEAALATGCARVNIG 104 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEecccc--C--CCCccHHHHHHHHHHc-CCCEEE-cCCCC-CHHHHHHHHHCCCCEEEEC
Confidence 37888999999999999999855432 1 1222348888887754 343432 12222 7899999999999987766
Q ss_pred ccch--HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE--EEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCC
Q 017179 240 IETV--EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI--MLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRP 315 (376)
Q Consensus 240 lEtv--~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~i--mvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P 315 (376)
-+.. +++...+- +...+..-.++.++-+. +.|.-++..+..+.++.+.+.+++.+.+..--
T Consensus 105 s~~l~~p~l~~~i~-------------~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~-- 169 (241)
T PRK14024 105 TAALENPEWCARVI-------------AEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYVVTDVT-- 169 (241)
T ss_pred chHhCCHHHHHHHH-------------HHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEEEEeec--
Confidence 4432 23333332 22222100012222111 22444566678888899999999988875211
Q ss_pred CCCCCCCcccCChHHHHHHHHHHHHHhhhhhccc
Q 017179 316 SKRHMPVSEYITPEAFERYRALGMEMGFRYVASG 349 (376)
Q Consensus 316 ~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sg 349 (376)
..++- .. | .++.++++.....+..+++|
T Consensus 170 -~~g~~-~G---~-d~~~i~~i~~~~~ipviasG 197 (241)
T PRK14024 170 -KDGTL-TG---P-NLELLREVCARTDAPVVASG 197 (241)
T ss_pred -CCCCc-cC---C-CHHHHHHHHhhCCCCEEEeC
Confidence 11111 11 2 35556666665556666666
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=93.68 E-value=2.5 Score=39.82 Aligned_cols=133 Identities=13% Similarity=0.122 Sum_probs=81.0
Q ss_pred chhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccc
Q 017179 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (376)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h 238 (376)
.+++.+.++.+.+.|+++++++..+++.. ..+ ...+++++|++.. .+.|.+ .+... +.+.++.+...|++.+-.
T Consensus 26 ~~d~~~~a~~~~~~G~~~i~i~d~~~~~~-~~~--~~~~~i~~i~~~~-~~pv~~-~GGI~-s~~d~~~~l~~G~~~v~i 99 (243)
T cd04731 26 AGDPVELAKRYNEQGADELVFLDITASSE-GRE--TMLDVVERVAEEV-FIPLTV-GGGIR-SLEDARRLLRAGADKVSI 99 (243)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEcCCcccc-cCc--ccHHHHHHHHHhC-CCCEEE-eCCCC-CHHHHHHHHHcCCceEEE
Confidence 45788889999999999999998876422 122 2457888888764 233332 22222 677888888888887655
Q ss_pred cccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEE------------ecCCCHHHHHHHHHHHHHcCCcE
Q 017179 239 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIML------------GCGETPDQVVSTMEKVRAAGVDV 306 (376)
Q Consensus 239 ~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imv------------GlGET~ee~~e~L~~Lrel~vd~ 306 (376)
+-.. + . +.+...++.+...+ ..+.+..++.. |.-++..+..+.++.+.+.+++.
T Consensus 100 g~~~----~---~----~p~~~~~i~~~~~~---~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~ 165 (243)
T cd04731 100 NSAA----V---E----NPELIREIAKRFGS---QCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGE 165 (243)
T ss_pred Cchh----h---h----ChHHHHHHHHHcCC---CCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCE
Confidence 4221 1 1 12222222222221 12444444332 23456777888889999999999
Q ss_pred EEeec
Q 017179 307 MTFGQ 311 (376)
Q Consensus 307 v~~~q 311 (376)
+.+..
T Consensus 166 i~v~~ 170 (243)
T cd04731 166 ILLTS 170 (243)
T ss_pred EEEec
Confidence 88854
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=93.43 E-value=1.2 Score=41.31 Aligned_cols=112 Identities=21% Similarity=0.382 Sum_probs=81.4
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.++++.++.++++.+.|++-+=||--. ++ ..+.|+.+++.+|++.|.+=+ -. +.+.++...++|++.+
T Consensus 17 ~~~~~a~~~~~al~~gGi~~iEiT~~t----~~-----a~~~I~~l~~~~p~~~vGAGT-V~--~~e~a~~a~~aGA~Fi 84 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEGGIRAIEITLRT----PN-----ALEAIEALRKEFPDLLVGAGT-VL--TAEQAEAAIAAGAQFI 84 (196)
T ss_dssp SSGGGHHHHHHHHHHTT--EEEEETTS----TT-----HHHHHHHHHHHHTTSEEEEES-----SHHHHHHHHHHT-SEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCC----cc-----HHHHHHHHHHHCCCCeeEEEe-cc--CHHHHHHHHHcCCCEE
Confidence 478999999999999999998888421 22 467889999889998887633 11 6889999999998865
Q ss_pred cccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
|.| ..+ -++++.+++. |+.+-.+.| |..|+.+.+ ++|.+++.+|
T Consensus 85 -------------vSP-~~~----~~v~~~~~~~---~i~~iPG~~-----TptEi~~A~----~~G~~~vK~F 128 (196)
T PF01081_consen 85 -------------VSP-GFD----PEVIEYAREY---GIPYIPGVM-----TPTEIMQAL----EAGADIVKLF 128 (196)
T ss_dssp -------------EES-S------HHHHHHHHHH---TSEEEEEES-----SHHHHHHHH----HTT-SEEEET
T ss_pred -------------ECC-CCC----HHHHHHHHHc---CCcccCCcC-----CHHHHHHHH----HCCCCEEEEe
Confidence 332 221 2677888884 688888885 999987765 6899999987
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional | Back alignment and domain information |
|---|
Probab=93.40 E-value=1.4 Score=46.77 Aligned_cols=140 Identities=17% Similarity=0.261 Sum_probs=90.1
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEee-eCCCCCcccHHHHHHHHHHHHhhC-CCcEEEEec----CCCCC-ChHHHHHH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSV-DRDDLADQGSGHFAQTVRKLKELK-PNMLIEALV----PDFRG-NNGCVREV 228 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg-~r~dl~d~g~~~~~elvr~Ik~~~-p~i~Ie~l~----pd~~g-~~e~l~~L 228 (376)
+++.++.+++++.+.+.|+++|-+... ..++ | .+.++.|.+.. .+..+..+. ++... ++..++.+
T Consensus 23 ~~s~e~Kl~ia~~L~~~Gvd~IEvG~p~as~~--d------~~~~~~i~~~~l~~~~i~~~~~~~~~~i~~~~d~~~e~~ 94 (524)
T PRK12344 23 SFSVEDKLRIARKLDELGVDYIEGGWPGSNPK--D------TEFFKRAKELKLKHAKLAAFGSTRRAGVSAEEDPNLQAL 94 (524)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCcCChh--H------HHHHHHHHHhCCCCcEEEEEeeccccCCCcccHHHHHHH
Confidence 589999999999999999999988542 1111 1 23455555422 234554433 23311 35678889
Q ss_pred HHcCcccccccccchH-HHHHhhcCCCCCHHHHH----HHHHHHHHhCCCCceEEEeEE---EecCCCHHHHHHHHHHHH
Q 017179 229 AKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIM---LGCGETPDQVVSTMEKVR 300 (376)
Q Consensus 229 ~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L----~vl~~ak~~~p~Gi~tkt~im---vGlGET~ee~~e~L~~Lr 300 (376)
.++|.+.+...+-+++ .+...++ .+.++.+ +.++.+++ .|+.+.-+.+ -|.-.+.+-+.+.++.+.
T Consensus 95 ~~~g~~~i~i~~~~Sd~h~~~~l~---~s~~e~l~~~~~~v~~ak~---~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~ 168 (524)
T PRK12344 95 LDAGTPVVTIFGKSWDLHVTEALR---TTLEENLAMIRDSVAYLKA---HGREVIFDAEHFFDGYKANPEYALATLKAAA 168 (524)
T ss_pred HhCCCCEEEEEECCCHHHHHHHcC---CCHHHHHHHHHHHHHHHHH---cCCeEEEccccccccccCCHHHHHHHHHHHH
Confidence 9999999888877777 3334443 3455555 55666776 3666554443 222234566778899999
Q ss_pred HcCCcEEEe
Q 017179 301 AAGVDVMTF 309 (376)
Q Consensus 301 el~vd~v~~ 309 (376)
+.+++.+.+
T Consensus 169 ~~Gad~i~l 177 (524)
T PRK12344 169 EAGADWVVL 177 (524)
T ss_pred hCCCCeEEE
Confidence 999998877
|
|
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.39 E-value=2.4 Score=44.80 Aligned_cols=135 Identities=18% Similarity=0.200 Sum_probs=85.8
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCC-----CCcccHHHHHHHHHHHHhhCCCcEEEEecC--CCCC--------
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD-----LADQGSGHFAQTVRKLKELKPNMLIEALVP--DFRG-------- 220 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~d-----l~d~g~~~~~elvr~Ik~~~p~i~Ie~l~p--d~~g-------- 220 (376)
.++.++.+.+|+++.+.|+..|-+.||..-| +.+ + =.+.|+.+++..|++.+..|.- +..|
T Consensus 23 r~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~E---d-pwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddv 98 (499)
T PRK12330 23 RMAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNE---D-PWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEV 98 (499)
T ss_pred cCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCC---C-HHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhH
Confidence 3789999999999999999999998875333 221 1 1467888888889998887763 1111
Q ss_pred ChHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE--EEecCCCHHHHHHHHHH
Q 017179 221 NNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI--MLGCGETPDQVVSTMEK 298 (376)
Q Consensus 221 ~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~i--mvGlGET~ee~~e~L~~ 298 (376)
....++...+.|.|++.+.....+ .+.....++.+++. |..+...| +++---|.+.+++..+.
T Consensus 99 v~~fv~~a~~~Gidi~RIfd~lnd------------v~nl~~ai~~vk~a---g~~~~~~i~yt~sp~~t~e~~~~~a~~ 163 (499)
T PRK12330 99 VDRFVEKSAENGMDVFRVFDALND------------PRNLEHAMKAVKKV---GKHAQGTICYTVSPIHTVEGFVEQAKR 163 (499)
T ss_pred HHHHHHHHHHcCCCEEEEEecCCh------------HHHHHHHHHHHHHh---CCeEEEEEEEecCCCCCHHHHHHHHHH
Confidence 144677778889998766422222 12233344445542 33332332 33444567777777777
Q ss_pred HHHcCCcEEEe
Q 017179 299 VRAAGVDVMTF 309 (376)
Q Consensus 299 Lrel~vd~v~~ 309 (376)
+.+.|++.|.|
T Consensus 164 l~~~Gad~I~I 174 (499)
T PRK12330 164 LLDMGADSICI 174 (499)
T ss_pred HHHcCCCEEEe
Confidence 77777777666
|
|
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.22 E-value=1.9 Score=46.52 Aligned_cols=138 Identities=18% Similarity=0.176 Sum_probs=91.3
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCC--CCcccHHHHHHHHHHHHhhCCCcEEEEecCC--CCC--------ChH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD--LADQGSGHFAQTVRKLKELKPNMLIEALVPD--FRG--------NNG 223 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~d--l~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd--~~g--------~~e 223 (376)
.++.++.+.+|+++.+.|+..+=+.||-.-| ++..+.+ =.+.|+.|++..|++.+..|.+. +.| ..+
T Consensus 23 r~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~-p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~ 101 (593)
T PRK14040 23 RLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGED-PWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVER 101 (593)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCC-HHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHH
Confidence 4789999999999999999999998774322 1111111 14678888888899998887752 111 133
Q ss_pred HHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEE--ecCCCHHHHHHHHHHHHH
Q 017179 224 CVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIML--GCGETPDQVVSTMEKVRA 301 (376)
Q Consensus 224 ~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imv--GlGET~ee~~e~L~~Lre 301 (376)
.++..+++|+|++.... .++ ..+.....++.+++ .|..+...+-+ .---|.+.+.+.++.+.+
T Consensus 102 ~v~~a~~~Gid~~rifd--------~ln----d~~~~~~ai~~ak~---~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~ 166 (593)
T PRK14040 102 FVERAVKNGMDVFRVFD--------AMN----DPRNLETALKAVRK---VGAHAQGTLSYTTSPVHTLQTWVDLAKQLED 166 (593)
T ss_pred HHHHHHhcCCCEEEEee--------eCC----cHHHHHHHHHHHHH---cCCeEEEEEEEeeCCccCHHHHHHHHHHHHH
Confidence 47778888999876642 111 13455567777877 35543333322 223466778888888888
Q ss_pred cCCcEEEe
Q 017179 302 AGVDVMTF 309 (376)
Q Consensus 302 l~vd~v~~ 309 (376)
.|+|.+.|
T Consensus 167 ~Gad~i~i 174 (593)
T PRK14040 167 MGVDSLCI 174 (593)
T ss_pred cCCCEEEE
Confidence 88888877
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=92.98 E-value=3 Score=39.04 Aligned_cols=161 Identities=13% Similarity=0.138 Sum_probs=94.1
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
.++++.|+.+.+.|+++++++-.++.... .| .-.+++++|.+.. .+.+.+ -+... +.+.++.+.++|++.+-.+
T Consensus 30 ~dp~~~a~~~~~~g~~~i~i~dl~~~~~~-~~--~n~~~~~~i~~~~-~~pv~~-~ggi~-~~~d~~~~~~~G~~~vilg 103 (232)
T TIGR03572 30 GDPVNAARIYNAKGADELIVLDIDASKRG-RE--PLFELISNLAEEC-FMPLTV-GGGIR-SLEDAKKLLSLGADKVSIN 103 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCcccC-CC--CCHHHHHHHHHhC-CCCEEE-ECCCC-CHHHHHHHHHcCCCEEEEC
Confidence 47888899999999999999987764221 12 2356777777654 233422 22322 5677888888898876554
Q ss_pred ccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCC-ceEEEeEEEec----------C---CCHHHHHHHHHHHHHcCCc
Q 017179 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAG-TLTKTSIMLGC----------G---ETPDQVVSTMEKVRAAGVD 305 (376)
Q Consensus 240 lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~G-i~tkt~imvGl----------G---ET~ee~~e~L~~Lrel~vd 305 (376)
-.+ + . + .+.++.+.+.++.. +.+..++-.|+ | ++..+..+.++.+.+.+++
T Consensus 104 ~~~----l---~----~----~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d 168 (232)
T TIGR03572 104 TAA----L---E----N----PDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAG 168 (232)
T ss_pred hhH----h---c----C----HHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcCCC
Confidence 221 1 1 0 13333333433221 33344433321 1 2345567888899999999
Q ss_pred EEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhccc
Q 017179 306 VMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASG 349 (376)
Q Consensus 306 ~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sg 349 (376)
.+.+.... + .++ ... + .++.++++........+++|
T Consensus 169 ~i~i~~i~-~--~g~-~~g---~-~~~~~~~i~~~~~ipvia~G 204 (232)
T TIGR03572 169 EILLNSID-R--DGT-MKG---Y-DLELIKTVSDAVSIPVIALG 204 (232)
T ss_pred EEEEeCCC-c--cCC-cCC---C-CHHHHHHHHhhCCCCEEEEC
Confidence 99886432 2 111 111 1 36667777766666777777
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 | Back alignment and domain information |
|---|
Probab=92.88 E-value=1.6 Score=40.63 Aligned_cols=157 Identities=16% Similarity=0.243 Sum_probs=94.6
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCC--cEEEEecCCCCCChHHHHHHHHcCcc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN--MLIEALVPDFRGNNGCVREVAKSGLN 234 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~--i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (376)
.++..+.+.++++.+.|++.+++==.|..-.|..++ =.++|++|++.. . +.+++.+-+ ....++.++++|++
T Consensus 9 ad~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~~~--g~~~i~~i~~~~-~~~~DvHLMv~~---P~~~i~~~~~~g~~ 82 (201)
T PF00834_consen 9 ADFLNLEEEIKRLEEAGADWLHIDIMDGHFVPNLTF--GPDIIKAIRKIT-DLPLDVHLMVEN---PERYIEEFAEAGAD 82 (201)
T ss_dssp S-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSSB-B---HHHHHHHHTTS-SSEEEEEEESSS---GGGHHHHHHHHT-S
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeecccccCCcccC--CHHHHHHHhhcC-CCcEEEEeeecc---HHHHHHHHHhcCCC
Confidence 467788899999999999999997777554454222 246788887753 3 455555543 24679999999999
Q ss_pred cccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCC
Q 017179 235 VFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMR 314 (376)
Q Consensus 235 ~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~ 314 (376)
.+...+|+.+. ..++++.+|+ .| .++++.+.-+-..+.+...+. .+|.|.+-- ..
T Consensus 83 ~i~~H~E~~~~--------------~~~~i~~ik~---~g--~k~GialnP~T~~~~~~~~l~-----~vD~VlvMs-V~ 137 (201)
T PF00834_consen 83 YITFHAEATED--------------PKETIKYIKE---AG--IKAGIALNPETPVEELEPYLD-----QVDMVLVMS-VE 137 (201)
T ss_dssp EEEEEGGGTTT--------------HHHHHHHHHH---TT--SEEEEEE-TTS-GGGGTTTGC-----CSSEEEEES-S-
T ss_pred EEEEcccchhC--------------HHHHHHHHHH---hC--CCEEEEEECCCCchHHHHHhh-----hcCEEEEEE-ec
Confidence 99888885332 2346667777 35 577888777654444433222 477776631 25
Q ss_pred CCCCCCCCcccCChHHHHHHHHHHHHHhhhh
Q 017179 315 PSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 315 P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
|+..+-+..+. .-++.++++++..+.|+.+
T Consensus 138 PG~~Gq~f~~~-~~~KI~~l~~~~~~~~~~~ 167 (201)
T PF00834_consen 138 PGFGGQKFIPE-VLEKIRELRKLIPENGLDF 167 (201)
T ss_dssp TTTSSB--HGG-HHHHHHHHHHHHHHHTCGS
T ss_pred CCCCcccccHH-HHHHHHHHHHHHHhcCCce
Confidence 75544433221 2356777777777766433
|
1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D .... |
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=92.88 E-value=2.5 Score=39.48 Aligned_cols=113 Identities=21% Similarity=0.248 Sum_probs=83.6
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.++++.++.++++.+.|++-|=||--. ++ -.+.|+++++.+|++.|.+=+ -. +.+.++...++|.+.+
T Consensus 13 ~~~~~a~~ia~al~~gGi~~iEit~~t----p~-----a~~~I~~l~~~~~~~~vGAGT-Vl--~~e~a~~ai~aGA~Fi 80 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLPAIEITLRT----PA-----ALDAIRAVAAEVEEAIVGAGT-IL--NAKQFEDAAKAGSRFI 80 (201)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCC----cc-----HHHHHHHHHHHCCCCEEeeEe-Cc--CHHHHHHHHHcCCCEE
Confidence 478999999999999999988888521 22 457888898888987776532 11 6788999999998865
Q ss_pred cccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeec
Q 017179 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 311 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~q 311 (376)
|. +..+ -++++.+++ .|+..-.+.| |..|+...+ +.|.++|-+|+
T Consensus 81 -------------vS-P~~~----~~vi~~a~~---~~i~~iPG~~-----TptEi~~A~----~~Ga~~vK~FP 125 (201)
T PRK06015 81 -------------VS-PGTT----QELLAAAND---SDVPLLPGAA-----TPSEVMALR----EEGYTVLKFFP 125 (201)
T ss_pred -------------EC-CCCC----HHHHHHHHH---cCCCEeCCCC-----CHHHHHHHH----HCCCCEEEECC
Confidence 33 2222 367778887 4677777774 888887754 67999888873
|
|
| >TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein | Back alignment and domain information |
|---|
Probab=92.73 E-value=7.6 Score=41.43 Aligned_cols=141 Identities=17% Similarity=0.229 Sum_probs=93.7
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHhhC-CCcEEEEec----CCCC-CChHHHHHH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELK-PNMLIEALV----PDFR-GNNGCVREV 228 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTs-g~r~dl~d~g~~~~~elvr~Ik~~~-p~i~Ie~l~----pd~~-g~~e~l~~L 228 (376)
+++.+|-+++++.+.+.|+++|=+.- ... .. =.+.+++|.+.. .+..|..+. ++.. .++..++.+
T Consensus 19 ~~s~eeKl~Ia~~L~~~GVd~IE~G~p~~s-------~~-d~~~v~~i~~~~~~~~~i~~~~r~~r~~~~~~~d~~~ea~ 90 (526)
T TIGR00977 19 SFSLEDKIRIAERLDDLGIHYIEGGWPGAN-------PK-DVQFFWQLKEMNFKNAKIVAFCSTRRPHKKVEEDKMLQAL 90 (526)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCC-------hH-HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchHHHHHHH
Confidence 58999999999999999999998741 111 11 123455555433 235665554 2321 135678999
Q ss_pred HHcCcccccccccchH-HHHHhhcCCCCCHHHHHHH----HHHHHHhCCCCceEEEeEE---EecCCCHHHHHHHHHHHH
Q 017179 229 AKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDV----LMMAKDYVPAGTLTKTSIM---LGCGETPDQVVSTMEKVR 300 (376)
Q Consensus 229 ~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~v----l~~ak~~~p~Gi~tkt~im---vGlGET~ee~~e~L~~Lr 300 (376)
.++|.+.+...+-+++ .+...++ .+.++.++. ++.|++ .|+.+.-+.+ -|.--+.+.+.+.++.+.
T Consensus 91 ~~~~~~~v~i~~~~Sd~h~~~~l~---~s~ee~l~~~~~~v~~ak~---~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~ 164 (526)
T TIGR00977 91 IKAETPVVTIFGKSWDLHVLEALQ---TTLEENLAMIYDTVAYLKR---QGDEVIYDAEHFFDGYKANPEYALATLATAQ 164 (526)
T ss_pred hcCCCCEEEEEeCCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---cCCeEEEEeeeeeecccCCHHHHHHHHHHHH
Confidence 9999998888777877 4444444 456666655 667777 3555543333 444456788899999999
Q ss_pred HcCCcEEEee
Q 017179 301 AAGVDVMTFG 310 (376)
Q Consensus 301 el~vd~v~~~ 310 (376)
+.+.+.+.+.
T Consensus 165 ~aGad~i~i~ 174 (526)
T TIGR00977 165 QAGADWLVLC 174 (526)
T ss_pred hCCCCeEEEe
Confidence 9999998873
|
This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases. |
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=92.71 E-value=2.4 Score=39.53 Aligned_cols=161 Identities=14% Similarity=0.150 Sum_probs=88.7
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
.++.+.|+.+.+.|+++++++..+.- . .|.....++++.|.+.. .+.| .......+.+.++.+.++|++.+-.+
T Consensus 30 ~~~~~~a~~~~~~g~~~i~v~dld~~--~-~g~~~~~~~i~~i~~~~-~~pv--~~~GGI~~~ed~~~~~~~Ga~~vilg 103 (233)
T PRK00748 30 DDPVAQAKAWEDQGAKWLHLVDLDGA--K-AGKPVNLELIEAIVKAV-DIPV--QVGGGIRSLETVEALLDAGVSRVIIG 103 (233)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCcc--c-cCCcccHHHHHHHHHHC-CCCE--EEcCCcCCHHHHHHHHHcCCCEEEEC
Confidence 47788899999999999999976431 1 11223567888887753 2333 33444447888999999999877554
Q ss_pred ccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe----EE--Eec-CCCHHHHHHHHHHHHHcCCcEEEeecC
Q 017179 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS----IM--LGC-GETPDQVVSTMEKVRAAGVDVMTFGQY 312 (376)
Q Consensus 240 lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~----im--vGl-GET~ee~~e~L~~Lrel~vd~v~~~qY 312 (376)
-...+ . .+...++.+.. +..+.+.-+ .+ .|. ..+..+..+..+.+.+.+++.+.+..-
T Consensus 104 ~~~l~----~-------~~~l~ei~~~~----~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~~~ 168 (233)
T PRK00748 104 TAAVK----N-------PELVKEACKKF----PGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIYTDI 168 (233)
T ss_pred chHHh----C-------HHHHHHHHHHh----CCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEEeee
Confidence 22211 0 11111222222 221222222 22 222 335566778888899999997666311
Q ss_pred CCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhccc
Q 017179 313 MRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASG 349 (376)
Q Consensus 313 ~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sg 349 (376)
.+ .++. .. + .++.++++........+++|
T Consensus 169 -~~--~g~~-~G-~---d~~~i~~l~~~~~ipvia~G 197 (233)
T PRK00748 169 -SR--DGTL-SG-P---NVEATRELAAAVPIPVIASG 197 (233)
T ss_pred -cC--cCCc-CC-C---CHHHHHHHHHhCCCCEEEeC
Confidence 11 1111 11 1 24555555555556666666
|
|
| >PLN03228 methylthioalkylmalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.42 E-value=2.6 Score=44.70 Aligned_cols=136 Identities=13% Similarity=0.189 Sum_probs=82.8
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCC---------cEEEEecCCCCCChHHHH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN---------MLIEALVPDFRGNNGCVR 226 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~---------i~Ie~l~pd~~g~~e~l~ 226 (376)
.++.+|-+++++.+.+.|+++|-+.. +... ..-.+.+++|.+..+. ..+..+..- ..+.++
T Consensus 102 ~fs~eeKi~Ia~~L~~~GVd~IEvG~---Pa~s----~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~---~~~dId 171 (503)
T PLN03228 102 SLTPPQKLEIARQLAKLRVDIMEVGF---PGSS----EEEFEAVKTIAKTVGNEVDEETGYVPVICGIARC---KKRDIE 171 (503)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC---CCCC----HHHHHHHHHHHHhcccccccccccceEEeeeccc---CHhhHH
Confidence 48999999999999999999998754 2211 1224456666543211 222222221 233445
Q ss_pred HHHHc----CcccccccccchH-HHHHhhcCCCCCHHHH----HHHHHHHHHhCCCCceEEEeEEEec---CCCHHH-HH
Q 017179 227 EVAKS----GLNVFAHNIETVE-ELQSAVRDHRANFKQS----LDVLMMAKDYVPAGTLTKTSIMLGC---GETPDQ-VV 293 (376)
Q Consensus 227 ~L~~a----Gld~i~h~lEtv~-~l~~~vr~r~~t~e~~----L~vl~~ak~~~p~Gi~tkt~imvGl---GET~ee-~~ 293 (376)
...++ |.+.+...+-+++ .+..+++ .+.++. .+.++.|++ .|+. .+.+|. +.++.| +.
T Consensus 172 ~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~---~s~ee~l~~~~~~V~~Ak~---~G~~---~v~f~~EDa~Rtd~efl~ 242 (503)
T PLN03228 172 AAWEALKYAKRPRILAFTSTSDIHMKYKLK---KTKEEVIEMAVSSIRYAKS---LGFH---DIQFGCEDGGRSDKEFLC 242 (503)
T ss_pred HHHHhhcccCCCEEEEEecCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---cCCc---eEEeccccccccCHHHHH
Confidence 44444 6666776666777 4344443 345544 556667777 3543 244555 556655 47
Q ss_pred HHHHHHHHcCCcEEEee
Q 017179 294 STMEKVRAAGVDVMTFG 310 (376)
Q Consensus 294 e~L~~Lrel~vd~v~~~ 310 (376)
+.++.+.+.+++.|.+.
T Consensus 243 ~~~~~a~~~Gad~I~l~ 259 (503)
T PLN03228 243 KILGEAIKAGATSVGIA 259 (503)
T ss_pred HHHHHHHhcCCCEEEEe
Confidence 88889999999998773
|
|
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=92.24 E-value=4 Score=38.35 Aligned_cols=112 Identities=18% Similarity=0.221 Sum_probs=77.8
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.++++.++.++++.+.|++-|=||- +. + .-.+.|+.+++.+|++.|.+=+ .. +.+.++...++|.+.+
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl--~~--~-----~~~~~I~~l~~~~p~~~IGAGT--Vl-~~~~a~~a~~aGA~Fi 91 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTL--RT--P-----AALEAIRLIAKEVPEALIGAGT--VL-NPEQLAQAIEAGAQFI 91 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEec--CC--c-----cHHHHHHHHHHHCCCCEEEEee--cc-CHHHHHHHHHcCCCEE
Confidence 5789999999999999999998882 21 1 1357889999889987765422 11 5788999999999865
Q ss_pred cccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
+. +..+. ++++.+++ .|+..-.+. -|..|+.+ ..++|.+++-+|
T Consensus 92 -------------vs-P~~~~----~vi~~a~~---~~i~~iPG~-----~TptEi~~----a~~~Ga~~vKlF 135 (212)
T PRK05718 92 -------------VS-PGLTP----PLLKAAQE---GPIPLIPGV-----STPSELML----GMELGLRTFKFF 135 (212)
T ss_pred -------------EC-CCCCH----HHHHHHHH---cCCCEeCCC-----CCHHHHHH----HHHCCCCEEEEc
Confidence 22 23222 66777777 345555455 37777443 556788888775
|
|
| >cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=92.18 E-value=1.4 Score=43.00 Aligned_cols=132 Identities=11% Similarity=0.104 Sum_probs=79.7
Q ss_pred CCchhHHHHHHHHHHCC-----CcEEEEEeeeCCCCCcccHHHHHHHHHHHHhh--CCCcEEEEecCCCCCChHHHHHHH
Q 017179 157 PDPDEPTNVAEAIASWG-----LDYVVITSVDRDDLADQGSGHFAQTVRKLKEL--KPNMLIEALVPDFRGNNGCVREVA 229 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G-----~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~--~p~i~Ie~l~pd~~g~~e~l~~L~ 229 (376)
.+.++=++.++.+.+.| +++|-+++-. ...+.++.+.+... .|.+..- +.| +.+.++...
T Consensus 18 ~~~~~Kv~i~~~L~~~G~~~~~v~~IE~~s~~--------~~d~~~v~~~~~~~~~~~~v~~~-~r~----~~~die~A~ 84 (279)
T cd07947 18 YTVEQIVKIYDYLHELGGGSGVIRQTEFFLYT--------EKDREAVEACLDRGYKFPEVTGW-IRA----NKEDLKLVK 84 (279)
T ss_pred CCHHHHHHHHHHHHHcCCCCCccceEEecCcC--------hHHHHHHHHHHHcCCCCCEEEEE-ecC----CHHHHHHHH
Confidence 48888899999999999 9999875421 12233333333221 2332221 333 677889999
Q ss_pred HcCcccccccccchH-HHHHhhcCCCCCHHHHH----HHHHHHHHhCCCCceEEEeEEEecCCCHHH--------HHHHH
Q 017179 230 KSGLNVFAHNIETVE-ELQSAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIMLGCGETPDQ--------VVSTM 296 (376)
Q Consensus 230 ~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L----~vl~~ak~~~p~Gi~tkt~imvGlGET~ee--------~~e~L 296 (376)
++|++.+...+-+++ -.+..++ .+.++.+ ++++.|++ .|+.+..++ -|.+..+ +.+.+
T Consensus 85 ~~g~~~v~i~~s~S~~~~~~~~~---~t~~e~l~~~~~~v~~a~~---~g~~v~~~~---ed~~r~d~~~~v~~~~~~~~ 155 (279)
T cd07947 85 EMGLKETGILMSVSDYHIFKKLK---MTREEAMEKYLEIVEEALD---HGIKPRCHL---EDITRADIYGFVLPFVNKLM 155 (279)
T ss_pred HcCcCEEEEEEcCCHHHHHHHhC---cCHHHHHHHHHHHHHHHHH---CCCeEEEEE---EcccCCCcccchHHHHHHHH
Confidence 999999988887777 4445554 3455555 45566666 466555444 1444442 22333
Q ss_pred HHHHHcCCc-EEEee
Q 017179 297 EKVRAAGVD-VMTFG 310 (376)
Q Consensus 297 ~~Lrel~vd-~v~~~ 310 (376)
+...+.|++ .+.+.
T Consensus 156 ~~~~~~G~~~~i~l~ 170 (279)
T cd07947 156 KLSKESGIPVKIRLC 170 (279)
T ss_pred HHHHHCCCCEEEEec
Confidence 344458998 67763
|
Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with |
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=92.10 E-value=5.8 Score=36.14 Aligned_cols=113 Identities=19% Similarity=0.300 Sum_probs=78.3
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.++++....++++.+.|++-|.++.-+. .-.+.++.+++.+|++.|.+-+- . +.+.++...++|.+.+
T Consensus 13 ~~~~~~~~~~~~l~~~G~~~vev~~~~~---------~~~~~i~~l~~~~~~~~iGag~v-~--~~~~~~~a~~~Ga~~i 80 (190)
T cd00452 13 DDAEDALALAEALIEGGIRAIEITLRTP---------GALEAIRALRKEFPEALIGAGTV-L--TPEQADAAIAAGAQFI 80 (190)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCh---------hHHHHHHHHHHHCCCCEEEEEeC-C--CHHHHHHHHHcCCCEE
Confidence 4688999999999999999999884211 13558899999888766654221 1 5788999999999876
Q ss_pred cccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeec
Q 017179 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 311 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~q 311 (376)
.. +..+ .++++.+++. |+ .+|+|.- |.+|..+.+ +.|+|++.+++
T Consensus 81 ~~--------------p~~~----~~~~~~~~~~---~~----~~i~gv~-t~~e~~~A~----~~Gad~i~~~p 125 (190)
T cd00452 81 VS--------------PGLD----PEVVKAANRA---GI----PLLPGVA-TPTEIMQAL----ELGADIVKLFP 125 (190)
T ss_pred Ec--------------CCCC----HHHHHHHHHc---CC----cEECCcC-CHHHHHHHH----HCCCCEEEEcC
Confidence 32 1211 2466666662 33 3566776 888876664 58999998863
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >PRK08005 epimerase; Validated | Back alignment and domain information |
|---|
Probab=92.00 E-value=8.1 Score=36.31 Aligned_cols=117 Identities=13% Similarity=0.092 Sum_probs=76.0
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCC-CcEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NMLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p-~i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
.|+..+.+.++++.++|++.+++==-|..-.|...+. .++++.|++... .+.+++.+-+ ....++.+.++|+|.
T Consensus 10 ad~~~l~~el~~l~~~g~d~lHiDvMDG~FVPN~tfG--~~~i~~l~~~t~~~~DvHLMv~~---P~~~i~~~~~~gad~ 84 (210)
T PRK08005 10 ADPLRYAEALTALHDAPLGSLHLDIEDTSFINNITFG--MKTIQAVAQQTRHPLSFHLMVSS---PQRWLPWLAAIRPGW 84 (210)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccC--HHHHHHHHhcCCCCeEEEeccCC---HHHHHHHHHHhCCCE
Confidence 4566788889999999999999865554333331111 346777765421 1555554432 245689999999999
Q ss_pred ccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHH
Q 017179 236 FAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTME 297 (376)
Q Consensus 236 i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~ 297 (376)
+....|+.+. ..++|+.+|+ .| .++++-+.-+-..+.+...+.
T Consensus 85 It~H~Ea~~~--------------~~~~l~~Ik~---~G--~k~GlAlnP~Tp~~~i~~~l~ 127 (210)
T PRK08005 85 IFIHAESVQN--------------PSEILADIRA---IG--AKAGLALNPATPLLPYRYLAL 127 (210)
T ss_pred EEEcccCccC--------------HHHHHHHHHH---cC--CcEEEEECCCCCHHHHHHHHH
Confidence 9988885321 2346666777 45 477888888766666655444
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=91.99 E-value=4.8 Score=38.46 Aligned_cols=130 Identities=14% Similarity=0.178 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
.+|++.|+.+.+.|+++++++--++..- +...-.+++++|.+.. ++.|.+ .+... +.+.++.+..+|++.+-.+
T Consensus 30 ~dp~~~a~~~~~~G~~~l~v~Dl~~~~~---~~~~n~~~i~~i~~~~-~~pv~~-~GGi~-s~~d~~~~~~~Ga~~vivg 103 (254)
T TIGR00735 30 GDPVELAQRYDEEGADELVFLDITASSE---GRTTMIDVVERTAETV-FIPLTV-GGGIK-SIEDVDKLLRAGADKVSIN 103 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCcccc---cChhhHHHHHHHHHhc-CCCEEE-ECCCC-CHHHHHHHHHcCCCEEEEC
Confidence 4678889999999999999997665421 1223467888887754 233432 22222 6788899999998877555
Q ss_pred ccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCC-CCceEEEeE-------------EE--ecCCCHHHHHHHHHHHHHcC
Q 017179 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVP-AGTLTKTSI-------------ML--GCGETPDQVVSTMEKVRAAG 303 (376)
Q Consensus 240 lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p-~Gi~tkt~i-------------mv--GlGET~ee~~e~L~~Lrel~ 303 (376)
-++.+ ..+.++.+.+.++ .-+.+..++ .+ |.-++.++..+.++.+.+.+
T Consensus 104 t~~~~---------------~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G 168 (254)
T TIGR00735 104 TAAVK---------------NPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLG 168 (254)
T ss_pred hhHhh---------------ChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcC
Confidence 22211 0133333333333 113333332 11 12345678889999999999
Q ss_pred CcEEEee
Q 017179 304 VDVMTFG 310 (376)
Q Consensus 304 vd~v~~~ 310 (376)
++.+.+.
T Consensus 169 ~~~iivt 175 (254)
T TIGR00735 169 AGEILLT 175 (254)
T ss_pred CCEEEEe
Confidence 9988884
|
|
| >PRK09722 allulose-6-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=91.81 E-value=5 Score=38.22 Aligned_cols=155 Identities=19% Similarity=0.245 Sum_probs=89.9
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhC--CCcEEEEecCCCCCChHHHHHHHHcCcc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK--PNMLIEALVPDFRGNNGCVREVAKSGLN 234 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~--p~i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (376)
.|+-.+.+.++.+.. |++.+++==.|.--.|...+. .++|+.|++.. | +.+++.+-+ ....++.+.++|+|
T Consensus 12 ad~~~l~~el~~l~~-g~d~lH~DiMDG~FVPN~tfg--~~~i~~ir~~t~~~-~DvHLMv~~---P~~~i~~~~~aGad 84 (229)
T PRK09722 12 MDLLKFKEQIEFLNS-KADYFHIDIMDGHFVPNLTLS--PFFVSQVKKLASKP-LDVHLMVTD---PQDYIDQLADAGAD 84 (229)
T ss_pred cCHHHHHHHHHHHHh-CCCEEEEecccCccCCCcccC--HHHHHHHHhcCCCC-eEEEEEecC---HHHHHHHHHHcCCC
Confidence 455677778888877 999999866654333331111 34677777642 3 455555532 24568999999999
Q ss_pred cccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCC
Q 017179 235 VFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMR 314 (376)
Q Consensus 235 ~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~ 314 (376)
.+....|+.+ ....++|+.+|+ .| .++++-+.-+-..+.+...|.. +|.|.+-- ..
T Consensus 85 ~it~H~Ea~~-------------~~~~~~i~~Ik~---~G--~kaGlalnP~T~~~~l~~~l~~-----vD~VLvMs-V~ 140 (229)
T PRK09722 85 FITLHPETIN-------------GQAFRLIDEIRR---AG--MKVGLVLNPETPVESIKYYIHL-----LDKITVMT-VD 140 (229)
T ss_pred EEEECccCCc-------------chHHHHHHHHHH---cC--CCEEEEeCCCCCHHHHHHHHHh-----cCEEEEEE-Ec
Confidence 9998888532 112356677777 45 5788888887555555555543 45444410 14
Q ss_pred CCCCCCCCcccCChHHHHHHHHHHHHHhh
Q 017179 315 PSKRHMPVSEYITPEAFERYRALGMEMGF 343 (376)
Q Consensus 315 P~~~~~~v~~~v~pe~~~~l~~~a~~~gf 343 (376)
|+..+-+..+. .-++..+++++-.+.|+
T Consensus 141 PGf~GQ~fi~~-~l~KI~~lr~~~~~~~~ 168 (229)
T PRK09722 141 PGFAGQPFIPE-MLDKIAELKALRERNGL 168 (229)
T ss_pred CCCcchhccHH-HHHHHHHHHHHHHhcCC
Confidence 65444332211 12345555555445453
|
|
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=91.79 E-value=5 Score=38.06 Aligned_cols=116 Identities=14% Similarity=0.093 Sum_probs=80.3
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.++++..+.++++.+.|++-+=||--. + ...+.+.++.+.+++.+|++.|.+=+ -. +.+.++...++|++.+
T Consensus 24 ~~~~~a~~~~~al~~gGi~~iEiT~~t----p-~a~~~i~~l~~~~~~~~p~~~vGaGT-Vl--~~e~a~~a~~aGA~Fi 95 (222)
T PRK07114 24 ADVEVAKKVIKACYDGGARVFEFTNRG----D-FAHEVFAELVKYAAKELPGMILGVGS-IV--DAATAALYIQLGANFI 95 (222)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCC----C-cHHHHHHHHHHHHHhhCCCeEEeeEe-Cc--CHHHHHHHHHcCCCEE
Confidence 478999999999999999988887421 1 12333444445556677887776533 11 6888999999998865
Q ss_pred cccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
|. +..+ -++++.+++ .|+..-.+.| |..|+.+.+ +.|.++|-+|
T Consensus 96 -------------Vs-P~~~----~~v~~~~~~---~~i~~iPG~~-----TpsEi~~A~----~~Ga~~vKlF 139 (222)
T PRK07114 96 -------------VT-PLFN----PDIAKVCNR---RKVPYSPGCG-----SLSEIGYAE----ELGCEIVKLF 139 (222)
T ss_pred -------------EC-CCCC----HHHHHHHHH---cCCCEeCCCC-----CHHHHHHHH----HCCCCEEEEC
Confidence 33 2222 267777777 3576666664 888887665 5788888887
|
|
| >PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=91.64 E-value=5.8 Score=37.58 Aligned_cols=117 Identities=14% Similarity=0.198 Sum_probs=76.6
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCC--cEEEEecCCCCCChHHHHHHHHcCcc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN--MLIEALVPDFRGNNGCVREVAKSGLN 234 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~--i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (376)
.|+-.+.+.++.+.+.|++.+++==.|..-.|...+. .++++.|++..++ +.+++.+-+ ....++.++++|+|
T Consensus 13 ad~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN~tfg--~~~i~~lr~~~~~~~~dvHLMv~~---P~~~i~~~~~~gad 87 (223)
T PRK08745 13 ADFARLGEEVDNVLKAGADWVHFDVMDNHYVPNLTIG--PMVCQALRKHGITAPIDVHLMVEP---VDRIVPDFADAGAT 87 (223)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcccC--HHHHHHHHhhCCCCCEEEEeccCC---HHHHHHHHHHhCCC
Confidence 4566788889999999999999866554333331111 3467777764222 455555532 24568999999999
Q ss_pred cccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHH
Q 017179 235 VFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTME 297 (376)
Q Consensus 235 ~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~ 297 (376)
.+....|..+ +..++|+.+|+ .| .++++.+.-+-..+.+...+.
T Consensus 88 ~I~~H~Ea~~--------------~~~~~l~~Ir~---~g--~k~GlalnP~T~~~~i~~~l~ 131 (223)
T PRK08745 88 TISFHPEASR--------------HVHRTIQLIKS---HG--CQAGLVLNPATPVDILDWVLP 131 (223)
T ss_pred EEEEcccCcc--------------cHHHHHHHHHH---CC--CceeEEeCCCCCHHHHHHHHh
Confidence 9998888532 12356666777 35 578888888766666655544
|
|
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=91.30 E-value=2.1 Score=46.20 Aligned_cols=81 Identities=15% Similarity=0.193 Sum_probs=56.3
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCc--ccHHHHHHHHHHHHhhCCCcEEEEecC-----CCCC-----ChHH
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD--QGSGHFAQTVRKLKELKPNMLIEALVP-----DFRG-----NNGC 224 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d--~g~~~~~elvr~Ik~~~p~i~Ie~l~p-----d~~g-----~~e~ 224 (376)
+..++++.++.++.+.|+..+-+.||..-|-.- .+-+ =.+.++.+++..|++.+..|+- .+.. -...
T Consensus 23 ~~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~ed-pwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~ 101 (596)
T PRK14042 23 MRTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKED-PWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAF 101 (596)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCC-HHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHH
Confidence 678999999999999999999999996432210 0001 1367888888889998887761 1111 1335
Q ss_pred HHHHHHcCcccccc
Q 017179 225 VREVAKSGLNVFAH 238 (376)
Q Consensus 225 l~~L~~aGld~i~h 238 (376)
++..++.|+|++-.
T Consensus 102 v~~a~~~Gidv~Ri 115 (596)
T PRK14042 102 VKLAVNNGVDVFRV 115 (596)
T ss_pred HHHHHHcCCCEEEE
Confidence 67778889888754
|
|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=91.23 E-value=4.8 Score=38.88 Aligned_cols=114 Identities=17% Similarity=0.138 Sum_probs=64.1
Q ss_pred ccHHHHHHHHHHHHhhCCCcEEEEec-C-CCCCChHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHH
Q 017179 190 QGSGHFAQTVRKLKELKPNMLIEALV-P-DFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMA 267 (376)
Q Consensus 190 ~g~~~~~elvr~Ik~~~p~i~Ie~l~-p-d~~g~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~a 267 (376)
.|.+.|.+.++..++..++..+-+.+ + +...-.+.++.+.++|+|.+..|+-+-... .-++-..+.+...++++.+
T Consensus 80 ~g~~~~~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~--~~~~~~~~~~~~~eiv~~v 157 (289)
T cd02810 80 LGLDVWLQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVG--GGRQLGQDPEAVANLLKAV 157 (289)
T ss_pred cCHHHHHHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCC--CCcccccCHHHHHHHHHHH
Confidence 34556666665554432222222211 1 100013456666777788777765432200 0000123567777888888
Q ss_pred HHhCCCCceEEEeEEEec--CCCHHHHHHHHHHHHHcCCcEEEeec
Q 017179 268 KDYVPAGTLTKTSIMLGC--GETPDQVVSTMEKVRAAGVDVMTFGQ 311 (376)
Q Consensus 268 k~~~p~Gi~tkt~imvGl--GET~ee~~e~L~~Lrel~vd~v~~~q 311 (376)
++.. .--+++.+ +.+.+|..+.++.+.+.++|.+.+..
T Consensus 158 r~~~------~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~ 197 (289)
T cd02810 158 KAAV------DIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAIN 197 (289)
T ss_pred HHcc------CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 8742 11233333 67888999999999999999998854
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=91.15 E-value=5.8 Score=37.27 Aligned_cols=112 Identities=17% Similarity=0.189 Sum_probs=80.1
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhC---CCcEEEEecCCCCCChHHHHHHHHcCc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK---PNMLIEALVPDFRGNNGCVREVAKSGL 233 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~---p~i~Ie~l~pd~~g~~e~l~~L~~aGl 233 (376)
.+.++.+..++++.+.|++-+=||-- -++ -.+.|++|++.+ |++.|.+=+ -+ +.+.++...++|.
T Consensus 22 ~~~~~a~~~~~al~~~Gi~~iEit~~----~~~-----a~~~i~~l~~~~~~~p~~~vGaGT-V~--~~~~~~~a~~aGA 89 (213)
T PRK06552 22 ESKEEALKISLAVIKGGIKAIEVTYT----NPF-----ASEVIKELVELYKDDPEVLIGAGT-VL--DAVTARLAILAGA 89 (213)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECC----Ccc-----HHHHHHHHHHHcCCCCCeEEeeee-CC--CHHHHHHHHHcCC
Confidence 47899999999999999998887742 122 357888888877 456666422 11 6788999999998
Q ss_pred ccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 234 NVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 234 d~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
+.+ |. +..+ -++++.+++ .|+..-.+. .|..|+.+.+ +.|.|++.+|
T Consensus 90 ~Fi-------------vs-P~~~----~~v~~~~~~---~~i~~iPG~-----~T~~E~~~A~----~~Gad~vklF 136 (213)
T PRK06552 90 QFI-------------VS-PSFN----RETAKICNL---YQIPYLPGC-----MTVTEIVTAL----EAGSEIVKLF 136 (213)
T ss_pred CEE-------------EC-CCCC----HHHHHHHHH---cCCCEECCc-----CCHHHHHHHH----HcCCCEEEEC
Confidence 865 33 2322 267777777 356665555 4888887775 5899999885
|
|
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=90.85 E-value=8.7 Score=34.86 Aligned_cols=77 Identities=12% Similarity=0.230 Sum_probs=50.1
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCC-CcEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NMLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p-~i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
.+++...+.++++.+.|+++|.|--.|...++. ...-.+.+++|++..+ .+.+.+..-+ ..+.++.+.++|+|.
T Consensus 8 ~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~--~~~~~~~v~~i~~~~~~~v~v~lm~~~---~~~~~~~~~~~gadg 82 (210)
T TIGR01163 8 ADFARLGEEVKAVEEAGADWIHVDVMDGHFVPN--LTFGPPVLEALRKYTDLPIDVHLMVEN---PDRYIEDFAEAGADI 82 (210)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCC--cccCHHHHHHHHhcCCCcEEEEeeeCC---HHHHHHHHHHcCCCE
Confidence 567788999999999999999995333333322 2223567888876421 2224444433 356688888999997
Q ss_pred ccc
Q 017179 236 FAH 238 (376)
Q Consensus 236 i~h 238 (376)
+..
T Consensus 83 v~v 85 (210)
T TIGR01163 83 ITV 85 (210)
T ss_pred EEE
Confidence 544
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.75 E-value=2.6 Score=41.42 Aligned_cols=99 Identities=12% Similarity=0.135 Sum_probs=63.0
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCC--CCCccc-HHHHHHHHHHHHhhCCC-cEEEE-ecCCCCCC----hHHHHH
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRD--DLADQG-SGHFAQTVRKLKELKPN-MLIEA-LVPDFRGN----NGCVRE 227 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~--dl~d~g-~~~~~elvr~Ik~~~p~-i~Ie~-l~pd~~g~----~e~l~~ 227 (376)
.+..++...++.+.+.|++.|++..||.+ |.+ ++ ..+-.++|+.||....+ ..|.+ +.|+.... ...+..
T Consensus 89 ~n~~~i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~-~~~~~~s~dLv~lik~~~~~~f~i~~A~~Pe~h~~s~~~~~d~~~ 167 (291)
T COG0685 89 RNRIEIISILKGAAALGIRNILALRGDPPAGDKP-GGKDLYSVDLVELIKKMRGGIFDIGVAAYPEGHPESKDVKEDIKR 167 (291)
T ss_pred CCHHHHHHHHHHHHHhCCceEEEecCCCCCCCCC-CccccCHHHHHHHHHHhcCCeEEEEEEeCCCCCccchhhHHHHHH
Confidence 46789999999999999999999999975 333 22 34567888888876655 55553 56655321 223333
Q ss_pred HH---HcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 017179 228 VA---KSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKD 269 (376)
Q Consensus 228 L~---~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~ 269 (376)
|+ ++|+|.+ .-.+ -++.+.+.+..+.+++
T Consensus 168 lkrKv~aGAd~~----------iTQ~---~fd~e~~~~~~~~~~~ 199 (291)
T COG0685 168 LKRKVDAGADFF----------ITQF---FFDVEAFERFAERVRA 199 (291)
T ss_pred HHHHHhcchHHH----------HHHH---ccCHHHHHHHHHHHHh
Confidence 33 4555432 2221 2456666666777766
|
|
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=90.72 E-value=7.3 Score=37.03 Aligned_cols=131 Identities=15% Similarity=0.168 Sum_probs=76.0
Q ss_pred chhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccc
Q 017179 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (376)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h 238 (376)
..++.+.++.+.+.|+++++++.-+++.- . ...-.+++++|++.. .+.|.+ .+... +.+.++.+.++|++.+-.
T Consensus 29 ~~d~~~~a~~~~~~G~~~i~i~dl~~~~~-~--~~~~~~~i~~i~~~~-~ipv~~-~GGi~-s~~~~~~~l~~Ga~~Vii 102 (253)
T PRK02083 29 AGDPVELAKRYNEEGADELVFLDITASSE-G--RDTMLDVVERVAEQV-FIPLTV-GGGIR-SVEDARRLLRAGADKVSI 102 (253)
T ss_pred cCCHHHHHHHHHHcCCCEEEEEeCCcccc-c--CcchHHHHHHHHHhC-CCCEEe-eCCCC-CHHHHHHHHHcCCCEEEE
Confidence 34778888888899999999998776321 1 234567888887754 233332 22332 678888888899888765
Q ss_pred cccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCC-CCceEEEeEE-----------E--ecCCCHHHHHHHHHHHHHcCC
Q 017179 239 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP-AGTLTKTSIM-----------L--GCGETPDQVVSTMEKVRAAGV 304 (376)
Q Consensus 239 ~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p-~Gi~tkt~im-----------v--GlGET~ee~~e~L~~Lrel~v 304 (376)
+-+.. . + .+.++.+.+.++ ..+.+..++. + |.-.+..+..+..+.+.+.++
T Consensus 103 gt~~l-------~----~----p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~ 167 (253)
T PRK02083 103 NSAAV-------A----N----PELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGA 167 (253)
T ss_pred ChhHh-------h----C----cHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCC
Confidence 42211 1 0 123333333332 1122333321 1 111234456677777888999
Q ss_pred cEEEee
Q 017179 305 DVMTFG 310 (376)
Q Consensus 305 d~v~~~ 310 (376)
+.+.+.
T Consensus 168 ~~ii~~ 173 (253)
T PRK02083 168 GEILLT 173 (253)
T ss_pred CEEEEc
Confidence 988774
|
|
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=90.70 E-value=3.6 Score=38.31 Aligned_cols=131 Identities=11% Similarity=0.142 Sum_probs=76.1
Q ss_pred chhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccc
Q 017179 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (376)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h 238 (376)
..++.+.|+.+.+.|++++.+..-+.. +. |.....+++++|++.. .+.+ .......+.+.++.+.++|+|.+-.
T Consensus 28 ~~dp~~~a~~~~~~g~d~l~v~dl~~~-~~--~~~~~~~~i~~i~~~~-~~pv--~~~GgI~~~e~~~~~~~~Gad~vvi 101 (234)
T cd04732 28 SDDPVEVAKKWEEAGAKWLHVVDLDGA-KG--GEPVNLELIEEIVKAV-GIPV--QVGGGIRSLEDIERLLDLGVSRVII 101 (234)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCcc-cc--CCCCCHHHHHHHHHhc-CCCE--EEeCCcCCHHHHHHHHHcCCCEEEE
Confidence 467888999999999999999843321 11 1223466788887764 2333 2222222678899999999988754
Q ss_pred cccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCC-CceEEEeE----EE--ec-CCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 239 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPA-GTLTKTSI----ML--GC-GETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 239 ~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~-Gi~tkt~i----mv--Gl-GET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
+-...+ + .+.++.+.+.++. -+.+..++ ++ |. ..+..+..+.++.+.+.+++.+.+.
T Consensus 102 gs~~l~-----------d----p~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~ 166 (234)
T cd04732 102 GTAAVK-----------N----PELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYT 166 (234)
T ss_pred CchHHh-----------C----hHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEE
Confidence 422111 0 1223333332221 12222221 11 11 3456677788888999999988875
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=90.61 E-value=8.3 Score=40.57 Aligned_cols=134 Identities=18% Similarity=0.194 Sum_probs=81.1
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCC-----CCcccHHHHHHHHHHHHhhCCCcEEEEecCC--CCC--------C
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDD-----LADQGSGHFAQTVRKLKELKPNMLIEALVPD--FRG--------N 221 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~d-----l~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd--~~g--------~ 221 (376)
++.++++.+|+++.+.|+..+-+.||-.-| +.+. =.+.++.+++..|++.+..|.-. +.| .
T Consensus 32 ~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~ed----pwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv 107 (468)
T PRK12581 32 LSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNED----PWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIV 107 (468)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCC----HHHHHHHHHHhCCCCceeeeeccccccCccCCcchHH
Confidence 778999999999999999999999986433 2221 13678888888898888876532 112 1
Q ss_pred hHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec--CCCHHHHHHHHHHH
Q 017179 222 NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC--GETPDQVVSTMEKV 299 (376)
Q Consensus 222 ~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl--GET~ee~~e~L~~L 299 (376)
...++..++.|+|++-.. ..++ ..+.....++.+++ .|..+...|.+=. .-|.+-+.+..+.+
T Consensus 108 ~~fv~~a~~~Gidi~Rif--------d~ln----d~~n~~~ai~~ak~---~G~~~~~~i~yt~sp~~t~~y~~~~a~~l 172 (468)
T PRK12581 108 DKFISLSAQNGIDVFRIF--------DALN----DPRNIQQALRAVKK---TGKEAQLCIAYTTSPVHTLNYYLSLVKEL 172 (468)
T ss_pred HHHHHHHHHCCCCEEEEc--------ccCC----CHHHHHHHHHHHHH---cCCEEEEEEEEEeCCcCcHHHHHHHHHHH
Confidence 223677778888876442 2222 23444455555555 2443332221111 23444466666666
Q ss_pred HHcCCcEEEe
Q 017179 300 RAAGVDVMTF 309 (376)
Q Consensus 300 rel~vd~v~~ 309 (376)
.+.|++.|.|
T Consensus 173 ~~~Gad~I~I 182 (468)
T PRK12581 173 VEMGADSICI 182 (468)
T ss_pred HHcCCCEEEE
Confidence 6666666655
|
|
| >TIGR01496 DHPS dihydropteroate synthase | Back alignment and domain information |
|---|
Probab=90.40 E-value=9.5 Score=36.77 Aligned_cols=77 Identities=13% Similarity=0.220 Sum_probs=51.8
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeee--CCCCCcc----cHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVD--RDDLADQ----GSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVA 229 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~--r~dl~d~----g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~ 229 (376)
..+++++.+.|++..+.|.+.|-| |+. +++.... ..+.+..+|+.+++.. ++.|.+ -.+ +.+.++.-.
T Consensus 19 ~~~~~~~~~~a~~~~~~GA~iIDI-G~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~-~~plsi--DT~--~~~vi~~al 92 (257)
T TIGR01496 19 FLSVDKAVAHAERMLEEGADIIDV-GGESTRPGADRVSPEEELNRVVPVIKALRDQP-DVPISV--DTY--RAEVARAAL 92 (257)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEE-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeEEE--eCC--CHHHHHHHH
Confidence 378899999999999999999998 432 3332211 1235777777777643 344432 122 567788777
Q ss_pred HcCcccccc
Q 017179 230 KSGLNVFAH 238 (376)
Q Consensus 230 ~aGld~i~h 238 (376)
++|.+.+++
T Consensus 93 ~~G~~iINs 101 (257)
T TIGR01496 93 EAGADIIND 101 (257)
T ss_pred HcCCCEEEE
Confidence 889998877
|
This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284. |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.19 E-value=7.6 Score=41.06 Aligned_cols=131 Identities=21% Similarity=0.302 Sum_probs=82.8
Q ss_pred CchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccc
Q 017179 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFA 237 (376)
Q Consensus 158 ~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~ 237 (376)
.+++ .+.++++.+.|++.|+|+..+.. .....+.|+.|++.+|++.|-+ ++.. +.+..+.+.++|+|.+-
T Consensus 239 ~~~~-~~~~~~l~~ag~d~i~id~a~G~------s~~~~~~i~~ik~~~~~~~v~a--G~V~-t~~~a~~~~~aGad~I~ 308 (495)
T PTZ00314 239 RPED-IERAAALIEAGVDVLVVDSSQGN------SIYQIDMIKKLKSNYPHVDIIA--GNVV-TADQAKNLIDAGADGLR 308 (495)
T ss_pred CHHH-HHHHHHHHHCCCCEEEEecCCCC------chHHHHHHHHHHhhCCCceEEE--CCcC-CHHHHHHHHHcCCCEEE
Confidence 3444 78899999999999999875322 2234689999999888765543 3332 67889999999999984
Q ss_pred cc-----ccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEE--eEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 238 HN-----IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKT--SIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 238 h~-----lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt--~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
.+ +.+...+. -+. ...+....++.+.+++ .|+++-+ +| -|..|+...+. +|.+.|-+|
T Consensus 309 vg~g~Gs~~~t~~~~-~~g--~p~~~ai~~~~~~~~~---~~v~vIadGGi-----~~~~di~kAla----~GA~~Vm~G 373 (495)
T PTZ00314 309 IGMGSGSICITQEVC-AVG--RPQASAVYHVARYARE---RGVPCIADGGI-----KNSGDICKALA----LGADCVMLG 373 (495)
T ss_pred ECCcCCcccccchhc-cCC--CChHHHHHHHHHHHhh---cCCeEEecCCC-----CCHHHHHHHHH----cCCCEEEEC
Confidence 33 22222111 111 1233444455555555 2444333 33 57788877664 788888887
Q ss_pred cCC
Q 017179 311 QYM 313 (376)
Q Consensus 311 qY~ 313 (376)
..+
T Consensus 374 ~~~ 376 (495)
T PTZ00314 374 SLL 376 (495)
T ss_pred chh
Confidence 665
|
|
| >PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function | Back alignment and domain information |
|---|
Probab=90.01 E-value=3.5 Score=40.16 Aligned_cols=142 Identities=18% Similarity=0.255 Sum_probs=78.7
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCC-CCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCC-C-hHHHHHHHHcC
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD-LADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG-N-NGCVREVAKSG 232 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~d-l~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g-~-~e~l~~L~~aG 232 (376)
+.+++|+.+.|.+..+.|..-|++=.=+.+| .+-...+.|.++++.|++..|++.|...++.-.+ + .+.+..+..-.
T Consensus 22 P~tpeEia~~A~~c~~AGAa~vH~H~R~~~~G~~s~d~~~~~e~~~~IR~~~pd~iv~~Ttg~~~~~~~~~R~~~v~~~~ 101 (272)
T PF05853_consen 22 PITPEEIAADAVACYEAGAAIVHIHARDDEDGRPSLDPELYAEVVEAIRAACPDLIVQPTTGGGGGPDPEERLAHVEAWK 101 (272)
T ss_dssp --SHHHHHHHHHHHHHHTESEEEE-EE-TTTS-EE--HHHHHHHHHHHHHHSTTSEEEEESSTTTTSGHHHHCTHHHHH-
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCHHHHHHHHHhcC
Confidence 6899999999999999999888775442211 1112368899999999999999999987764222 2 33333333324
Q ss_pred cccccccc----------------cchHHHHHhhcCCC-------CCHHHHHHHHHHHHHhCCCCc---eEEEeEEEec-
Q 017179 233 LNVFAHNI----------------ETVEELQSAVRDHR-------ANFKQSLDVLMMAKDYVPAGT---LTKTSIMLGC- 285 (376)
Q Consensus 233 ld~i~h~l----------------Etv~~l~~~vr~r~-------~t~e~~L~vl~~ak~~~p~Gi---~tkt~imvGl- 285 (376)
+|....+. +.+.++++.++.++ ++... ++.+..+.+ .|+ +.--.+++|.
T Consensus 102 pd~asl~~gs~n~~~~~~~~~n~~~~~~~~~~~~~e~Gi~pe~ev~d~~~-l~~~~~l~~---~G~l~~p~~~~~vlG~~ 177 (272)
T PF05853_consen 102 PDMASLNPGSMNFGTRDRVYINTPADARELARRMRERGIKPEIEVFDPGH-LRNARRLIE---KGLLPGPLLVNFVLGVP 177 (272)
T ss_dssp -SEEEEE-S-EEESGGCSEE---HHHHHHHHHHHHHTT-EEEEEESSHHH-HHHHHHHHH---TTSS-SSEEEEEEES-T
T ss_pred CCeEEecccccccccCCceecCCHHHHHHHHHHHHHcCCeEEEEEEcHHH-HHHHHHHHH---CCCCCCCeEEEEcccCC
Confidence 55544431 23345555554222 22233 333333333 133 4556666666
Q ss_pred C---CCHHHHHHHHHHHHH
Q 017179 286 G---ETPDQVVSTMEKVRA 301 (376)
Q Consensus 286 G---ET~ee~~e~L~~Lre 301 (376)
| -|.+++...++.+.+
T Consensus 178 ~g~~~~~~~l~~~l~~l~~ 196 (272)
T PF05853_consen 178 GGMPATPENLLAMLDMLPE 196 (272)
T ss_dssp TS--S-HHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhcCC
Confidence 4 556666666666665
|
; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B .... |
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=89.88 E-value=12 Score=36.53 Aligned_cols=167 Identities=17% Similarity=0.162 Sum_probs=95.0
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.+.+-+..+++++.+.+.--|+..+...-++. +|...|...++.+.+....+.|- +.-|+..+.+.+....++|.+++
T Consensus 24 ~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~vpv~-lhlDH~~~~e~i~~ai~~Gf~sV 101 (282)
T TIGR01859 24 NNLEWTQAILEAAEEENSPVIIQVSEGAIKYM-GGYKMAVAMVKTLIERMSIVPVA-LHLDHGSSYESCIKAIKAGFSSV 101 (282)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCcchhhcc-CcHHHHHHHHHHHHHHCCCCeEE-EECCCCCCHHHHHHHHHcCCCEE
Confidence 45677888888888888877776665433332 34677888998887766323332 34465556788888889998765
Q ss_pred cccccchHHHHHhhcCCCCCHHH----HHHHHHHHHHhCCCCceE--EEeEEEecCCCH---------HHHHHHHHHHHH
Q 017179 237 AHNIETVEELQSAVRDHRANFKQ----SLDVLMMAKDYVPAGTLT--KTSIMLGCGETP---------DQVVSTMEKVRA 301 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~----~L~vl~~ak~~~p~Gi~t--kt~imvGlGET~---------ee~~e~L~~Lre 301 (376)
-+ +. ...++++ ..++.+.++.. |+.+ ..+. +| |+.+ .+..+..+++++
T Consensus 102 mi--d~----------s~l~~~eni~~t~~v~~~a~~~---gv~Ve~ElG~-~g-g~ed~~~g~~~~~t~~eea~~f~~~ 164 (282)
T TIGR01859 102 MI--DG----------SHLPFEENLALTKKVVEIAHAK---GVSVEAELGT-LG-GIEDGVDEKEAELADPDEAEQFVKE 164 (282)
T ss_pred EE--CC----------CCCCHHHHHHHHHHHHHHHHHc---CCEEEEeeCC-Cc-CccccccccccccCCHHHHHHHHHH
Confidence 32 21 1223333 33555555552 4432 2222 12 2211 256666778888
Q ss_pred cCCcEEEe--ecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhccc
Q 017179 302 AGVDVMTF--GQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASG 349 (376)
Q Consensus 302 l~vd~v~~--~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sg 349 (376)
.++|++.+ |+.. +..... ++-.++.|+++....+...|+=|
T Consensus 165 tgvD~Lavs~Gt~h-g~~~~~------~~l~~e~L~~i~~~~~iPlv~hG 207 (282)
T TIGR01859 165 TGVDYLAAAIGTSH-GKYKGE------PGLDFERLKEIKELTNIPLVLHG 207 (282)
T ss_pred HCcCEEeeccCccc-cccCCC------CccCHHHHHHHHHHhCCCEEEEC
Confidence 89999884 4321 111111 11236667777666665555433
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >TIGR02146 LysS_fung_arch homocitrate synthase | Back alignment and domain information |
|---|
Probab=89.81 E-value=21 Score=35.16 Aligned_cols=142 Identities=16% Similarity=0.171 Sum_probs=90.1
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
.++.++..+.++.+.+.|++++-+++.... ++ ..+..+.+........+-.+.+. ..+.++...+.|++.
T Consensus 16 ~~~~~~ki~i~~~l~~~Gv~~iE~g~p~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~ 85 (344)
T TIGR02146 16 NFSTEQKIEIAKALDEFGIDYIEVTHPAAS--KQ-----SRIDIEIIASLGLKANIVTHIRC---RLDDAKVAVELGVDG 85 (344)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCC--HH-----HHHHHHHHHhcCCCcEEEEECCC---CHHHHHHHHHCCcCE
Confidence 378889999999999999999998874211 11 12223333322211223334432 356677788888887
Q ss_pred ccccccchH-HHHHhhc-CCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 236 FAHNIETVE-ELQSAVR-DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 236 i~h~lEtv~-~l~~~vr-~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
+....-..+ .....+. ......+.....++.+++ .|+.+..+++-.+-...+++++..+.+.+.+++.+.+.
T Consensus 86 ~~~~~~~s~~~~~~~~~~~~~~~~~~v~~~~e~a~~---~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~i~~~ 159 (344)
T TIGR02146 86 IDIFFGTSKLLRIAEHRSDAKSILESARETIEYAKS---AGLEVRFSAEDTFRSELADLLSIYETVGVFGVDRVGIA 159 (344)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH---CCCeEEEEEeeCCCCCHHHHHHHHHHHHHCCCCEEEEc
Confidence 655433222 2233322 112223456677788887 46778888887777778999999999999999987663
|
This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs. |
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=89.56 E-value=2.6 Score=40.20 Aligned_cols=185 Identities=19% Similarity=0.245 Sum_probs=100.6
Q ss_pred HHHHHHHCCCcEEEEEeee---CCCCCccc---HHHHHHHHHHHHhhCCCcEEEEecCCCCCC----hHHHHHHHHcCcc
Q 017179 165 VAEAIASWGLDYVVITSVD---RDDLADQG---SGHFAQTVRKLKELKPNMLIEALVPDFRGN----NGCVREVAKSGLN 234 (376)
Q Consensus 165 ~a~al~~~G~~eIvLTsg~---r~dl~d~g---~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~----~e~l~~L~~aGld 234 (376)
.|+.+.+.|++-+.++|-. --.++|.+ .+.+...++.|.... .+.+-+=.+.-.|+ .+.++.+.++|++
T Consensus 21 sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~-~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~ 99 (243)
T cd00377 21 SARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAV-DLPVIADADTGYGNALNVARTVRELEEAGAA 99 (243)
T ss_pred HHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhc-cCCEEEEcCCCCCCHHHHHHHHHHHHHcCCE
Confidence 3566677799887776642 11445544 344445555554432 11111101110123 3446778888877
Q ss_pred cccccccchHHHHHhhcC-----CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEe-----cC-CCHHHHHHHHHHHHHcC
Q 017179 235 VFAHNIETVEELQSAVRD-----HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG-----CG-ETPDQVVSTMEKVRAAG 303 (376)
Q Consensus 235 ~i~h~lEtv~~l~~~vr~-----r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvG-----lG-ET~ee~~e~L~~Lrel~ 303 (376)
.+.. | +..+++-+. .-.+.++..+.|+.+++.... + ...-|+.+ .| +..+|.++-.+...+.|
T Consensus 100 gv~i--E--D~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~-~-~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AG 173 (243)
T cd00377 100 GIHI--E--DQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDD-L-PDFVIIARTDALLAGEEGLDEAIERAKAYAEAG 173 (243)
T ss_pred EEEE--e--cCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhc-c-CCeEEEEEcCchhccCCCHHHHHHHHHHHHHcC
Confidence 6544 3 122222110 124788888888888886533 3 34445555 55 68999999999999999
Q ss_pred CcEEEeecCCCCC-------CCCCCCcccCChH----HHHHHHHHHHHHhhhhhccch-hHhhhhhhcH
Q 017179 304 VDVMTFGQYMRPS-------KRHMPVSEYITPE----AFERYRALGMEMGFRYVASGP-MVRSSYKAGE 360 (376)
Q Consensus 304 vd~v~~~qY~~P~-------~~~~~v~~~v~pe----~~~~l~~~a~~~gf~~~~sgp-~vrssy~a~~ 360 (376)
.|.+-+-....+. ....|+.=+..|. ..++|. ++||..+.-|+ +.|+.++|=+
T Consensus 174 AD~v~v~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~l~----~lG~~~v~~~~~~~~~a~~a~~ 238 (243)
T cd00377 174 ADGIFVEGLKDPEEIRAFAEAPDVPLNVNMTPGGNLLTVAELA----ELGVRRVSYGLALLRAAAKAMR 238 (243)
T ss_pred CCEEEeCCCCCHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHH----HCCCeEEEEChHHHHHHHHHHH
Confidence 9988663111110 1123322222221 133333 45998887666 7788877743
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=89.56 E-value=11 Score=36.25 Aligned_cols=130 Identities=11% Similarity=0.128 Sum_probs=77.6
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
.+|++.|+.+.+.|+++++++=.++..-. ...-.+++++|.+.. .+.|.+- +... +.+.++.+.++|++.+-.|
T Consensus 30 ~dp~~~a~~~~~~g~~~l~i~Dl~~~~~~---~~~n~~~i~~i~~~~-~~pv~~g-GGi~-s~~d~~~l~~~G~~~vvig 103 (258)
T PRK01033 30 GDPINAVRIFNEKEVDELIVLDIDASKRG---SEPNYELIENLASEC-FMPLCYG-GGIK-TLEQAKKIFSLGVEKVSIN 103 (258)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCCcCC---CcccHHHHHHHHHhC-CCCEEEC-CCCC-CHHHHHHHHHCCCCEEEEC
Confidence 37888999999999999999976654211 122367788887653 3444322 2222 5677888888898877665
Q ss_pred ccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCC-CceEEEeEEEec------------CCCHHHHHHHHHHHHHcCCcE
Q 017179 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPA-GTLTKTSIMLGC------------GETPDQVVSTMEKVRAAGVDV 306 (376)
Q Consensus 240 lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~-Gi~tkt~imvGl------------GET~ee~~e~L~~Lrel~vd~ 306 (376)
-++.+ . .+.++.+.+.++. -+.+.-++=-|. -.+..+..+.++.+.+.+++.
T Consensus 104 s~~~~----~-----------~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ 168 (258)
T PRK01033 104 TAALE----D-----------PDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGE 168 (258)
T ss_pred hHHhc----C-----------HHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCE
Confidence 22211 0 1233333333321 133333332221 134556788888899999998
Q ss_pred EEee
Q 017179 307 MTFG 310 (376)
Q Consensus 307 v~~~ 310 (376)
+.+.
T Consensus 169 ii~~ 172 (258)
T PRK01033 169 ILLN 172 (258)
T ss_pred EEEE
Confidence 8775
|
|
| >cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=89.45 E-value=15 Score=36.08 Aligned_cols=138 Identities=12% Similarity=0.136 Sum_probs=85.3
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhh---CCCcEEEEecCCCCCChHHHHHHHHc-
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL---KPNMLIEALVPDFRGNNGCVREVAKS- 231 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~---~p~i~Ie~l~pd~~g~~e~l~~L~~a- 231 (376)
.++.++-+++++.+.+.|+++|-+.- |-..+ . =.+.++.|.+. .++..+.++.+... +.++...++
T Consensus 19 ~~s~~~Ki~ia~~L~~~Gv~~IE~gf---P~~~~--~--e~e~~~~i~~~~~~~~~~~~~al~r~~~---~die~a~~~~ 88 (284)
T cd07942 19 PMSVEQKLRFFKLLVKIGFKEIEVGF---PSASQ--T--DFDFVRELIEEDLIPDDVTIQVLTQARE---DLIERTFEAL 88 (284)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC---CCCCH--H--HHHHHHHHHHccCCCCCCEEEEEcCCCh---hhHHHHHHHh
Confidence 48999999999999999999998762 44433 1 23567777443 23577778887653 335566665
Q ss_pred -Ccc--cccccccchH-HHHHhhcCCCCCHHHHHH----HHHHHHHhCCCCce-EEEeEEEec-C----CC-HHHHHHHH
Q 017179 232 -GLN--VFAHNIETVE-ELQSAVRDHRANFKQSLD----VLMMAKDYVPAGTL-TKTSIMLGC-G----ET-PDQVVSTM 296 (376)
Q Consensus 232 -Gld--~i~h~lEtv~-~l~~~vr~r~~t~e~~L~----vl~~ak~~~p~Gi~-tkt~imvGl-G----ET-~ee~~e~L 296 (376)
|++ .+...+-+++ -+..+++ .+.++.++ +++.+++. |+. +.+++-+-+ | .+ .+.+.+.+
T Consensus 89 ~~~~~~~v~i~~~~Sd~h~~~~~~---~s~~e~~~~~~~~v~~a~~~---g~~~~~~~~~~~~~~EDasr~~~~~l~~~~ 162 (284)
T cd07942 89 RGAKKAIVHLYNATSPLQRRVVFG---KSKEEIIEIAVDGAKLVKEL---AAKYPETDWRFEYSPESFSDTELDFALEVC 162 (284)
T ss_pred CCCCCCEEEEEEcCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHh---cccccCceEEEEECCccCCCCCHHHHHHHH
Confidence 554 4666666777 4444554 34555555 55566663 432 234555555 5 35 45567777
Q ss_pred HHHHHc---CCc---EEEe
Q 017179 297 EKVRAA---GVD---VMTF 309 (376)
Q Consensus 297 ~~Lrel---~vd---~v~~ 309 (376)
+.+.+. +++ .|.+
T Consensus 163 ~~~~~~~~~g~~~~~~i~l 181 (284)
T cd07942 163 EAVIDVWQPTPENKIILNL 181 (284)
T ss_pred HHHHHhhcCCCCcceEEEc
Confidence 777776 444 5555
|
Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong |
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=89.41 E-value=5.8 Score=37.20 Aligned_cols=130 Identities=15% Similarity=0.205 Sum_probs=73.4
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
.++++.++.+.+.|++++++---+.. ..+.....+.|+.|.+..+ +.+.+ -+..+ +.+.++.+.++|++.+..+
T Consensus 32 ~~~~e~a~~~~~~G~~~l~i~dl~~~---~~~~~~~~~~i~~i~~~~~-~~l~v-~GGi~-~~~~~~~~~~~Ga~~v~iG 105 (241)
T PRK13585 32 GDPVEVAKRWVDAGAETLHLVDLDGA---FEGERKNAEAIEKIIEAVG-VPVQL-GGGIR-SAEDAASLLDLGVDRVILG 105 (241)
T ss_pred CCHHHHHHHHHHcCCCEEEEEechhh---hcCCcccHHHHHHHHHHcC-CcEEE-cCCcC-CHHHHHHHHHcCCCEEEEC
Confidence 45788888888999999987633211 1122345667777777653 33332 22222 5778899999999987654
Q ss_pred ccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCC-CceEEEe----EEE--ec-CCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPA-GTLTKTS----IML--GC-GETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 240 lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~-Gi~tkt~----imv--Gl-GET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
-+..+ + .+.++.+.+.++. -+.+..+ -++ |. .++..+..+..+.+.+.+++.+.+.
T Consensus 106 s~~~~-----------~----~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~ 169 (241)
T PRK13585 106 TAAVE-----------N----PEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILFT 169 (241)
T ss_pred hHHhh-----------C----hHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEE
Confidence 32211 0 1223333333221 1222222 112 33 3333467778888889999988774
|
|
| >PLN02321 2-isopropylmalate synthase | Back alignment and domain information |
|---|
Probab=89.22 E-value=5.6 Score=43.37 Aligned_cols=140 Identities=15% Similarity=0.166 Sum_probs=80.4
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEee-eCCCCCcccHHHHHHHHHHHHhhC-CCc----EEEEecCCCCCChHHHHHHH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSV-DRDDLADQGSGHFAQTVRKLKELK-PNM----LIEALVPDFRGNNGCVREVA 229 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg-~r~dl~d~g~~~~~elvr~Ik~~~-p~i----~Ie~l~pd~~g~~e~l~~L~ 229 (376)
.++.+|-+++++.+.+.|+++|-+..- ..++ | ++ .++.|.+.. +.+ .+..+..--+.+.+.++...
T Consensus 104 ~~s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp~--D--~e----~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~A~ 175 (632)
T PLN02321 104 TLTSKEKLDIARQLAKLGVDIIEAGFPIASPD--D--LE----AVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDAAW 175 (632)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCcCCCcc--H--HH----HHHHHHHhcccCCCccccceeeeeehhccHHhHHHHH
Confidence 489999999999999999999988652 1111 2 22 255554331 111 11212111122566667666
Q ss_pred HcCcc----cccccccchH-HHHHhhcCCCCCHHHHHHHH----HHHHHhCCCCc-eEEEeEEEecCCCHHHHHHHHHHH
Q 017179 230 KSGLN----VFAHNIETVE-ELQSAVRDHRANFKQSLDVL----MMAKDYVPAGT-LTKTSIMLGCGETPDQVVSTMEKV 299 (376)
Q Consensus 230 ~aGld----~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl----~~ak~~~p~Gi-~tkt~imvGlGET~ee~~e~L~~L 299 (376)
+++.+ .+...+-+++ .+..+++ .+.++.++.+ +.|++ .|. .+.-+..-+.--+.+.+.+.++.+
T Consensus 176 ~al~~a~~~~I~i~~stSd~h~~~~l~---~t~ee~l~~~~~~V~~Ak~---~G~~~v~fs~EDa~rtd~d~l~~~~~~a 249 (632)
T PLN02321 176 EAVKHAKRPRIHTFIATSEIHMEHKLR---KTPDEVVEIARDMVKYARS---LGCEDVEFSPEDAGRSDPEFLYRILGEV 249 (632)
T ss_pred HHhcCCCCCEEEEEEcCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---cCCceEEEecccCCCCCHHHHHHHHHHH
Confidence 66332 3555555666 3444443 4677776644 55555 233 233333222223456677888999
Q ss_pred HHcCCcEEEe
Q 017179 300 RAAGVDVMTF 309 (376)
Q Consensus 300 rel~vd~v~~ 309 (376)
.+.|++.|.+
T Consensus 250 ~~aGa~~I~L 259 (632)
T PLN02321 250 IKAGATTLNI 259 (632)
T ss_pred HHcCCCEEEe
Confidence 9999999887
|
|
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=88.90 E-value=9.7 Score=34.72 Aligned_cols=118 Identities=14% Similarity=0.174 Sum_probs=69.9
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEE----EecCCCCCChHHHHHHHHcC
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIE----ALVPDFRGNNGCVREVAKSG 232 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie----~l~pd~~g~~e~l~~L~~aG 232 (376)
.++++.++.++++ +-|++-|-++..... ..| .+.|+.|++.+|+..+- ++.|+ ...++.+.++|
T Consensus 9 ~~~~~a~~~~~~l-~~~v~~iev~~~l~~---~~g----~~~i~~l~~~~~~~~i~~d~k~~d~~----~~~~~~~~~~G 76 (206)
T TIGR03128 9 LDIEEALELAEKV-ADYVDIIEIGTPLIK---NEG----IEAVKEMKEAFPDRKVLADLKTMDAG----EYEAEQAFAAG 76 (206)
T ss_pred CCHHHHHHHHHHc-ccCeeEEEeCCHHHH---HhC----HHHHHHHHHHCCCCEEEEEEeeccch----HHHHHHHHHcC
Confidence 5678889999988 778776655322110 111 56788888877754332 22222 23588899999
Q ss_pred cccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec---CCCHHHHHHHHHHHHHcCCcEEEe
Q 017179 233 LNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC---GETPDQVVSTMEKVRAAGVDVMTF 309 (376)
Q Consensus 233 ld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl---GET~ee~~e~L~~Lrel~vd~v~~ 309 (376)
+|.+....++.. ....++++.+++ .|+.+ ++++ .+..+++ ..+.++++|++.+
T Consensus 77 ad~i~vh~~~~~-------------~~~~~~i~~~~~---~g~~~----~~~~~~~~t~~~~~----~~~~~~g~d~v~~ 132 (206)
T TIGR03128 77 ADIVTVLGVADD-------------ATIKGAVKAAKK---HGKEV----QVDLINVKDKVKRA----KELKELGADYIGV 132 (206)
T ss_pred CCEEEEeccCCH-------------HHHHHHHHHHHH---cCCEE----EEEecCCCChHHHH----HHHHHcCCCEEEE
Confidence 998876544321 223467777777 35432 3342 2323333 3345679999988
Q ss_pred e
Q 017179 310 G 310 (376)
Q Consensus 310 ~ 310 (376)
+
T Consensus 133 ~ 133 (206)
T TIGR03128 133 H 133 (206)
T ss_pred c
Confidence 5
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=88.89 E-value=13 Score=36.08 Aligned_cols=161 Identities=14% Similarity=0.003 Sum_probs=91.3
Q ss_pred chhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccc
Q 017179 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (376)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h 238 (376)
.++|++.|+...+.|++.++|. || |+|...-.++|++|.+ .+ +.|++ -+-.+ . +.++.+.++|++.+-.
T Consensus 42 ~~dP~~~A~~~~~~Ga~~lHvV-----DL-dgg~~~n~~~i~~i~~-~~-~~vqv-GGGIR-~-e~i~~~l~~Ga~rVii 110 (262)
T PLN02446 42 DKSAAEFAEMYKRDGLTGGHVI-----ML-GADDASLAAALEALRA-YP-GGLQV-GGGVN-S-ENAMSYLDAGASHVIV 110 (262)
T ss_pred CCCHHHHHHHHHHCCCCEEEEE-----EC-CCCCcccHHHHHHHHh-CC-CCEEE-eCCcc-H-HHHHHHHHcCCCEEEE
Confidence 3689999999999999999987 33 2222222678888877 43 55543 22333 4 8899999999998877
Q ss_pred cccchHHHHHhhcCCCCCHHHHHHHHHHHHHhC-CCCceEEEeE--------EEecC---CCHHHHHHHHHHHHHcCCcE
Q 017179 239 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYV-PAGTLTKTSI--------MLGCG---ETPDQVVSTMEKVRAAGVDV 306 (376)
Q Consensus 239 ~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~-p~Gi~tkt~i--------mvGlG---ET~ee~~e~L~~Lrel~vd~ 306 (376)
+=-. +..+..+. +.++.+.+.+ |.-+.+..+. +.=-| +|.-+..+.+..+.+.++..
T Consensus 111 gT~A-------v~~~~~~p----~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~g~~e 179 (262)
T PLN02446 111 TSYV-------FRDGQIDL----ERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLAAYCDE 179 (262)
T ss_pred chHH-------HhCCCCCH----HHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHHHhCCCE
Confidence 5110 11011122 2333333333 2213332222 11112 25667788778888888887
Q ss_pred EEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhccc
Q 017179 307 MTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASG 349 (376)
Q Consensus 307 v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sg 349 (376)
+-+..--+- ++. .. | -++.+++++.......++||
T Consensus 180 ii~TdI~rD---Gtl-~G---~-d~el~~~l~~~~~ipVIASG 214 (262)
T PLN02446 180 FLVHGVDVE---GKR-LG---I-DEELVALLGEHSPIPVTYAG 214 (262)
T ss_pred EEEEEEcCC---Ccc-cC---C-CHHHHHHHHhhCCCCEEEEC
Confidence 766433222 221 11 1 35566666666666666766
|
|
| >COG1856 Uncharacterized homolog of biotin synthetase [Function unknown] | Back alignment and domain information |
|---|
Probab=88.62 E-value=7.1 Score=37.33 Aligned_cols=110 Identities=18% Similarity=0.197 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhhC----CCcEEEEecCCCCCChHHHHHHHHcCccccccc--ccchHHHHHhhcCCCCCHHHHHHHHHH
Q 017179 193 GHFAQTVRKLKELK----PNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN--IETVEELQSAVRDHRANFKQSLDVLMM 266 (376)
Q Consensus 193 ~~~~elvr~Ik~~~----p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~--lEtv~~l~~~vr~r~~t~e~~L~vl~~ 266 (376)
+.|...++.|++.. |.+.|.+--+-..+..+.++.|.+-.+|.+-.+ +-|.-.-+... +.-+.++.+++++.
T Consensus 136 ~dyl~~l~~L~e~~irvvpHitiGL~~gki~~e~kaIdiL~~~~~DalVl~vliPtpGtkm~~~--~pp~~eE~i~v~~~ 213 (275)
T COG1856 136 EDYLRSLLLLKENGIRVVPHITIGLDFGKIHGEFKAIDILVNYEPDALVLVVLIPTPGTKMGNS--PPPPVEEAIKVVKY 213 (275)
T ss_pred HHHHHHHHHHHHcCceeceeEEEEeccCcccchHHHHHHHhcCCCCeEEEEEEecCCchhccCC--CCcCHHHHHHHHHH
Confidence 45666666666543 445554433334445677888877777765443 23322112222 45789999999999
Q ss_pred HHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEe
Q 017179 267 AKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (376)
Q Consensus 267 ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~ 309 (376)
|++.+|+ ++..+.|==.||..-++. +++..+++|.|++
T Consensus 214 AR~~f~~--pv~iGCmrP~Ge~rvk~d---~~av~~gVd~It~ 251 (275)
T COG1856 214 ARKKFPN--PVSIGCMRPRGEWRVKLD---KEAVLAGVDRITF 251 (275)
T ss_pred HHHhCCC--CeeEeecCcCchhHHHHH---HHHHHcCCceeec
Confidence 9999986 677777777787655554 5667789999987
|
|
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=88.41 E-value=20 Score=35.18 Aligned_cols=167 Identities=10% Similarity=0.084 Sum_probs=96.2
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.+.+.+..++++..+.+.--|+-++...-.+ .|.+.+..+++...+.. .+.|- +.-|+..+.+.+....++|.+++
T Consensus 26 ~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~--~~~~~~~~~~~~~a~~~-~vpv~-lHlDH~~~~e~i~~Al~~G~tsV 101 (281)
T PRK06806 26 ANMEMVMGAIKAAEELNSPIILQIAEVRLNH--SPLHLIGPLMVAAAKQA-KVPVA-VHFDHGMTFEKIKEALEIGFTSV 101 (281)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCcchhcc--CChHHHHHHHHHHHHHC-CCCEE-EECCCCCCHHHHHHHHHcCCCEE
Confidence 4567778888888888876665555433222 34667777777766654 23333 45566557888999999998877
Q ss_pred cccccchHHHHHhhcCCCCCHHHH----HHHHHHHHHhCCCCceEEEeE-EEe-------c-CCCHHHHHHHHHHHHHcC
Q 017179 237 AHNIETVEELQSAVRDHRANFKQS----LDVLMMAKDYVPAGTLTKTSI-MLG-------C-GETPDQVVSTMEKVRAAG 303 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~~----L~vl~~ak~~~p~Gi~tkt~i-mvG-------l-GET~ee~~e~L~~Lrel~ 303 (376)
.+- ....++++. .++.+.+++ .|+.+...+ -+| . |.+-.+..+..++.++.+
T Consensus 102 m~d------------~s~~~~~eni~~t~~v~~~a~~---~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg 166 (281)
T PRK06806 102 MFD------------GSHLPLEENIQKTKEIVELAKQ---YGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETD 166 (281)
T ss_pred EEc------------CCCCCHHHHHHHHHHHHHHHHH---cCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhC
Confidence 541 122334443 345555555 355554332 223 1 222235556677777889
Q ss_pred CcEEEe--ecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhccc
Q 017179 304 VDVMTF--GQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASG 349 (376)
Q Consensus 304 vd~v~~--~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sg 349 (376)
+|++.+ |+.. ++.+ ..++-.++.|+++........|+=|
T Consensus 167 ~DyLAvaiG~~h-g~~~------~~~~l~~~~L~~i~~~~~iPlV~hG 207 (281)
T PRK06806 167 VDALAVAIGNAH-GMYN------GDPNLRFDRLQEINDVVHIPLVLHG 207 (281)
T ss_pred CCEEEEccCCCC-CCCC------CCCccCHHHHHHHHHhcCCCEEEEC
Confidence 999998 6332 2221 1122346667777666555445433
|
|
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=88.41 E-value=2 Score=43.17 Aligned_cols=71 Identities=23% Similarity=0.273 Sum_probs=51.1
Q ss_pred chhHHHHHHHHHH--CCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 159 PDEPTNVAEAIAS--WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 159 ~eEi~~~a~al~~--~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
+++. +.++++.+ .|++.|+|-.-+ +-..++.++|+.||+.+|++.| .-++. .+.+..+.|.++|+|.+
T Consensus 107 ~~d~-er~~~L~~~~~g~D~iviD~Ah------Ghs~~~i~~ik~ik~~~P~~~v--IaGNV-~T~e~a~~Li~aGAD~v 176 (346)
T PRK05096 107 DADF-EKTKQILALSPALNFICIDVAN------GYSEHFVQFVAKAREAWPDKTI--CAGNV-VTGEMVEELILSGADIV 176 (346)
T ss_pred HHHH-HHHHHHHhcCCCCCEEEEECCC------CcHHHHHHHHHHHHHhCCCCcE--EEecc-cCHHHHHHHHHcCCCEE
Confidence 4554 44556665 599999985443 3367899999999999998654 33332 26788999999999998
Q ss_pred ccc
Q 017179 237 AHN 239 (376)
Q Consensus 237 ~h~ 239 (376)
-.+
T Consensus 177 KVG 179 (346)
T PRK05096 177 KVG 179 (346)
T ss_pred EEc
Confidence 544
|
|
| >cd00739 DHPS DHPS subgroup of Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=88.25 E-value=11 Score=36.45 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=49.9
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEee-eCCCCCc----ccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSV-DRDDLAD----QGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK 230 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg-~r~dl~d----~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~ 230 (376)
.++++++++.|++..+.|.+.|-|=+. .+++... ...+.+..+|+.|++.. ++.|. +-.+ +.+.++.-.+
T Consensus 20 ~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~-~~plS--IDT~--~~~v~e~al~ 94 (257)
T cd00739 20 FLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL-DVLIS--VDTF--RAEVARAALE 94 (257)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCcEE--EeCC--CHHHHHHHHH
Confidence 478999999999999999999988332 2333221 12345666777777653 23332 2222 5677777777
Q ss_pred cCccccc
Q 017179 231 SGLNVFA 237 (376)
Q Consensus 231 aGld~i~ 237 (376)
+|.+.+|
T Consensus 95 ~G~~iIN 101 (257)
T cd00739 95 AGADIIN 101 (257)
T ss_pred hCCCEEE
Confidence 7888776
|
DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. |
| >TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type | Back alignment and domain information |
|---|
Probab=87.93 E-value=10 Score=40.85 Aligned_cols=140 Identities=11% Similarity=0.063 Sum_probs=85.4
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhh---CCCcEEEEecCCCCCC-hHHHHHHHHc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL---KPNMLIEALVPDFRGN-NGCVREVAKS 231 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~---~p~i~Ie~l~pd~~g~-~e~l~~L~~a 231 (376)
+++.++=+++++.|.+.|+++|-+.-..-. ... .+.++++.+. .++..+.++.+...++ +..++.+..+
T Consensus 44 ~~s~e~Ki~ia~~L~~~Gvd~IE~Gfp~~s------~~D-~e~v~~i~~~~l~~~~~~i~al~~~~~~did~a~~a~~~~ 116 (564)
T TIGR00970 44 PMSPARKRRYFDLLVRIGFKEIEVGFPSAS------QTD-FDFVREIIEQGAIPDDVTIQVLTQSREELIERTFEALSGA 116 (564)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCC------HHH-HHHHHHHHHhcCCCCCcEEEEEcCCchhhHHHHHHHhcCC
Confidence 589999999999999999999987522111 112 2344444333 1357888888865432 2334444445
Q ss_pred CcccccccccchH-HHHHhhcCCCCCHHHHHHHHHH----HHHhCCCC-ceEEEeEEEec-CC----C-HHHHHHHHHHH
Q 017179 232 GLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMM----AKDYVPAG-TLTKTSIMLGC-GE----T-PDQVVSTMEKV 299 (376)
Q Consensus 232 Gld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~----ak~~~p~G-i~tkt~imvGl-GE----T-~ee~~e~L~~L 299 (376)
+.+.+...+-+++ -+...++ .+.++.++.+.. +++....+ ..+.+.+.+-| +| + .+.+++.++.+
T Consensus 117 ~~~~v~i~~~~Sd~h~~~~l~---~s~ee~l~~~~~~v~~ak~~~~~~~~~~~~~~~v~f~~Ed~~r~d~~~l~~~~~~a 193 (564)
T TIGR00970 117 KRATVHFYNATSILFREVVFR---ASRAEVQAIATDGTKLVRKCTKQAAKYPGTQWRFEYSPESFSDTELEFAKEVCEAV 193 (564)
T ss_pred CCCEEEEEEcCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecccCCCCCHHHHHHHHHHH
Confidence 5456777777777 3334443 567777665544 55532111 12345556666 77 5 46677888999
Q ss_pred HHcCCc
Q 017179 300 RAAGVD 305 (376)
Q Consensus 300 rel~vd 305 (376)
.+.+.+
T Consensus 194 ~~ag~~ 199 (564)
T TIGR00970 194 KEVWAP 199 (564)
T ss_pred HHhCCC
Confidence 999763
|
A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria. |
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=87.87 E-value=10 Score=35.20 Aligned_cols=131 Identities=15% Similarity=0.161 Sum_probs=74.5
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
.+|.+.|+.+.+.|++++++. |.+.... |...-.++++.+.+..+ +.+ .......+.+.++.+.++|++.+-.+
T Consensus 28 ~dp~~~a~~~~~~g~~~l~v~--dl~~~~~-g~~~~~~~i~~i~~~~~-~pi--~~ggGI~~~ed~~~~~~~Ga~~vvlg 101 (230)
T TIGR00007 28 DDPVEAAKKWEEEGAERIHVV--DLDGAKE-GGPVNLPVIKKIVRETG-VPV--QVGGGIRSLEDVEKLLDLGVDRVIIG 101 (230)
T ss_pred CCHHHHHHHHHHcCCCEEEEE--eCCcccc-CCCCcHHHHHHHHHhcC-CCE--EEeCCcCCHHHHHHHHHcCCCEEEEC
Confidence 467888999999999999984 4333322 12223567777766542 323 33444447889999999999876443
Q ss_pred ccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEE------EecCC-CHHHHHHHHHHHHHcCCcEEEee
Q 017179 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIM------LGCGE-TPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 240 lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~im------vGlGE-T~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
-+..+ +.+...++.+... ..-+.+..++- -|.-| +..+..+.++.+.+.+++.+.+.
T Consensus 102 s~~l~-----------d~~~~~~~~~~~g---~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~ 165 (230)
T TIGR00007 102 TAAVE-----------NPDLVKELLKEYG---PERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYT 165 (230)
T ss_pred hHHhh-----------CHHHHHHHHHHhC---CCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEE
Confidence 22111 1122223333321 11133333322 12211 23566788888899999977764
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=87.80 E-value=12 Score=36.89 Aligned_cols=188 Identities=17% Similarity=0.245 Sum_probs=103.3
Q ss_pred CCcEEEEEeee---CCCCCcccHHHHHHHHHHHHhhCCCcEEEE-ecCCCCCC----hHHHHHHHHcCcccccccccchH
Q 017179 173 GLDYVVITSVD---RDDLADQGSGHFAQTVRKLKELKPNMLIEA-LVPDFRGN----NGCVREVAKSGLNVFAHNIETVE 244 (376)
Q Consensus 173 G~~eIvLTsg~---r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~-l~pd~~g~----~e~l~~L~~aGld~i~h~lEtv~ 244 (376)
|++-+-+||.- .-.+||+|.-.+.+++..++...+.+.+-+ ...|-.++ ...++.+.++|+..+ ++| |
T Consensus 38 Gf~ai~~ss~~~a~s~G~pD~~~~~~~e~~~~~~~I~~a~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi--~iE--D 113 (285)
T TIGR02320 38 GFDGIWSSSLTDSTSRGVPDIEEASWTQRLDVVEFMFDVTTKPIILDGDTGGNFEHFRRLVRKLERRGVSAV--CIE--D 113 (285)
T ss_pred CcCEEEechHHHHHHCCCCCcCcCCHHHHHHHHHHHHhhcCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEE--EEe--c
Confidence 99988777642 234667653334444444443332221111 11121133 445788889887654 444 2
Q ss_pred HHHHhhcC--------CCCCHHHHHHHHHHHHHhCC-CCceE--EEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 245 ELQSAVRD--------HRANFKQSLDVLMMAKDYVP-AGTLT--KTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 245 ~l~~~vr~--------r~~t~e~~L~vl~~ak~~~p-~Gi~t--kt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
..+++.|+ .-.+.++..+.|+.+++... ..+.+ .|+-.++ ++..+|.++-.+...+.|.|.+-+ .+.
T Consensus 114 q~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~-~~~~~eAi~Ra~ay~eAGAD~ifv-~~~ 191 (285)
T TIGR02320 114 KLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLIL-GKGMEDALKRAEAYAEAGADGIMI-HSR 191 (285)
T ss_pred cCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccc-cCCHHHHHHHHHHHHHcCCCEEEe-cCC
Confidence 23333221 12467899999999887521 11333 4444321 345788888899999999998876 332
Q ss_pred CCC-----------CC---CCCCcccCC--h-HHHHHHHHHHHHHhhhhhccc-hhHhhhhhhcHHHHHHHHHhh
Q 017179 314 RPS-----------KR---HMPVSEYIT--P-EAFERYRALGMEMGFRYVASG-PMVRSSYKAGEFYIKSMIESD 370 (376)
Q Consensus 314 ~P~-----------~~---~~~v~~~v~--p-e~~~~l~~~a~~~gf~~~~sg-p~vrssy~a~~~~~~~~~~~~ 370 (376)
.++ .. ..|+.-... | -.+++|. ++||..+.-| -+.|..|+|-+.....+++..
T Consensus 192 ~~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL~----~lG~~~v~~~~~~~~aa~~a~~~~~~~~~~~g 262 (285)
T TIGR02320 192 KKDPDEILEFARRFRNHYPRTPLVIVPTSYYTTPTDEFR----DAGISVVIYANHLLRAAYAAMQQVAERILEHG 262 (285)
T ss_pred CCCHHHHHHHHHHhhhhCCCCCEEEecCCCCCCCHHHHH----HcCCCEEEEhHHHHHHHHHHHHHHHHHHHHcC
Confidence 121 10 123211010 1 1244444 4588887543 356999999888888877544
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=87.78 E-value=6.2 Score=38.07 Aligned_cols=102 Identities=12% Similarity=0.145 Sum_probs=66.1
Q ss_pred hHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHH
Q 017179 222 NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVR 300 (376)
Q Consensus 222 ~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET~ee~~e~L~~Lr 300 (376)
.+.++.+.+.|++.+-.+-.+.+- ..-+.+++.++++.+.+.... ...+|+|. +.+-+|.++..+..+
T Consensus 24 ~~~i~~l~~~Gv~gl~v~GstGE~-------~~lt~~Er~~l~~~~~~~~~~----~~~vi~gv~~~~~~~~~~~a~~a~ 92 (284)
T cd00950 24 ERLIEFQIENGTDGLVVCGTTGES-------PTLSDEEHEAVIEAVVEAVNG----RVPVIAGTGSNNTAEAIELTKRAE 92 (284)
T ss_pred HHHHHHHHHcCCCEEEECCCCcch-------hhCCHHHHHHHHHHHHHHhCC----CCcEEeccCCccHHHHHHHHHHHH
Confidence 456677778888776443222221 135678899999988886432 45688999 578999999999999
Q ss_pred HcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHh
Q 017179 301 AAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMG 342 (376)
Q Consensus 301 el~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~g 342 (376)
++|+|.+-+. .|. ..+.. ..+-++++++++...+
T Consensus 93 ~~G~d~v~~~---~P~--~~~~~---~~~l~~~~~~ia~~~~ 126 (284)
T cd00950 93 KAGADAALVV---TPY--YNKPS---QEGLYAHFKAIAEATD 126 (284)
T ss_pred HcCCCEEEEc---ccc--cCCCC---HHHHHHHHHHHHhcCC
Confidence 9999977663 231 11111 1344666777766533
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.77 E-value=2.6 Score=41.01 Aligned_cols=110 Identities=13% Similarity=0.247 Sum_probs=62.7
Q ss_pred HHHHHHHHHhhCCCcEEEEec---CCCCCChHHHHHHHHcCcccccccccc---------hH-HHHHhhcCCCCCHHHHH
Q 017179 195 FAQTVRKLKELKPNMLIEALV---PDFRGNNGCVREVAKSGLNVFAHNIET---------VE-ELQSAVRDHRANFKQSL 261 (376)
Q Consensus 195 ~~elvr~Ik~~~p~i~Ie~l~---pd~~g~~e~l~~L~~aGld~i~h~lEt---------v~-~l~~~vr~r~~t~e~~L 261 (376)
+.+.++++++..-...|-.++ |+.....+.++.|.++|+|.+..++-. .. ...+.++ .+.+.++.+
T Consensus 4 ~~~~F~~l~~~~~~a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~-~g~t~~~~l 82 (265)
T COG0159 4 LDQKFAQLKAENRGALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALA-AGVTLEDTL 82 (265)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHH-CCCCHHHHH
Confidence 445566666554334444333 333224566777788888888776422 22 2334566 588999999
Q ss_pred HHHHHHHHhCCCCceEEEeEEEec-CCC-HHHHHHHHHHHHHcCCcEEEe
Q 017179 262 DVLMMAKDYVPAGTLTKTSIMLGC-GET-PDQVVSTMEKVRAAGVDVMTF 309 (376)
Q Consensus 262 ~vl~~ak~~~p~Gi~tkt~imvGl-GET-~ee~~e~L~~Lrel~vd~v~~ 309 (376)
++++.+++..+. +-- ++++. ..- .--+...++.+++.|+|-+-+
T Consensus 83 el~~~~r~~~~~---~Pi-vlm~Y~Npi~~~Gie~F~~~~~~~GvdGliv 128 (265)
T COG0159 83 ELVEEIRAKGVK---VPI-VLMTYYNPIFNYGIEKFLRRAKEAGVDGLLV 128 (265)
T ss_pred HHHHHHHhcCCC---CCE-EEEEeccHHHHhhHHHHHHHHHHcCCCEEEe
Confidence 999999974221 112 22222 221 122344577788888887766
|
|
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=87.47 E-value=5.2 Score=39.09 Aligned_cols=92 Identities=16% Similarity=0.141 Sum_probs=61.9
Q ss_pred CCcEEEEecCCC-CC--C----hHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEE
Q 017179 207 PNMLIEALVPDF-RG--N----NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKT 279 (376)
Q Consensus 207 p~i~Ie~l~pd~-~g--~----~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt 279 (376)
.++..-.++|-- .+ | ...++.+.+.|++.+-.+=.|.+- ..-+.+++.++++.+.+.... +.
T Consensus 7 ~Gi~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~-------~~Lt~eEr~~v~~~~~~~~~g----~~ 75 (296)
T TIGR03249 7 SGLLSFPVTPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEF-------FSLTPAEYEQVVEIAVSTAKG----KV 75 (296)
T ss_pred CceEEeeeCCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCc-------ccCCHHHHHHHHHHHHHHhCC----CC
Confidence 456666677721 11 2 455677777887765433222221 235688999999988885422 55
Q ss_pred eEEEecCCCHHHHHHHHHHHHHcCCcEEEe
Q 017179 280 SIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (376)
Q Consensus 280 ~imvGlGET~ee~~e~L~~Lrel~vd~v~~ 309 (376)
.+|+|.|.+-+|-++..+...+.|+|.+-+
T Consensus 76 pvi~gv~~~t~~ai~~a~~a~~~Gadav~~ 105 (296)
T TIGR03249 76 PVYTGVGGNTSDAIEIARLAEKAGADGYLL 105 (296)
T ss_pred cEEEecCccHHHHHHHHHHHHHhCCCEEEE
Confidence 688888778889999999999999987655
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=87.38 E-value=2.5 Score=44.49 Aligned_cols=133 Identities=19% Similarity=0.299 Sum_probs=88.0
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
+++.+.++++.+.|++-|+|-.-+ +-...+.++|+.|++.+|++.|-+ ++..+.+..+.|.++|+|.+..+
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a~------g~~~~~~~~i~~i~~~~~~~~vi~---g~~~t~~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTAH------GHQVKMISAIKAVRALDLGVPIVA---GNVVSAEGVRDLLEAGANIIKVG 294 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCCC------CCcHHHHHHHHHHHHHCCCCeEEE---eccCCHHHHHHHHHhCCCEEEEC
Confidence 577788999999999999985443 224679999999999988866543 44447899999999999998744
Q ss_pred cc----chHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 240 IE----TVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 240 lE----tv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
+= +.-+.+.-+. .....-.+++.+.+++. |+++-++ |=--+..|+...|. +|-+.|.+|-+|
T Consensus 295 ~g~Gs~~ttr~~~~~g--~~~~~a~~~~~~~~~~~---~~~viad---Ggi~~~~di~kala----~GA~~vm~g~~~ 360 (475)
T TIGR01303 295 VGPGAMCTTRMMTGVG--RPQFSAVLECAAEARKL---GGHVWAD---GGVRHPRDVALALA----AGASNVMVGSWF 360 (475)
T ss_pred CcCCccccCccccCCC--CchHHHHHHHHHHHHHc---CCcEEEe---CCCCCHHHHHHHHH----cCCCEEeechhh
Confidence 32 1113332222 23455556666666663 3432221 11257777776654 677888887665
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=87.10 E-value=16 Score=33.08 Aligned_cols=113 Identities=19% Similarity=0.203 Sum_probs=60.7
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
++..+.++.+.+.|++.|+|.-. |.. ...+.+.++.+++......+.+++. +.++.+.++|+|.+...
T Consensus 21 ~~~~~~~~~~~~~gv~~v~lr~~---~~~---~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~a~~~gad~vh~~ 88 (212)
T PRK00043 21 RDLLEVVEAALEGGVTLVQLREK---GLD---TRERLELARALKELCRRYGVPLIVN------DRVDLALAVGADGVHLG 88 (212)
T ss_pred ccHHHHHHHHHhcCCCEEEEeCC---CCC---HHHHHHHHHHHHHHHHHhCCeEEEe------ChHHHHHHcCCCEEecC
Confidence 45667788888999999987532 222 2334556666554321122223443 34777888999876442
Q ss_pred ccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 240 lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
.+..+ ...++..+. .|. ++|. --|.+|..+.. +.++|+|.++.++
T Consensus 89 ~~~~~----------------~~~~~~~~~---~~~------~~g~~~~t~~e~~~a~----~~gaD~v~~~~~~ 134 (212)
T PRK00043 89 QDDLP----------------VADARALLG---PDA------IIGLSTHTLEEAAAAL----AAGADYVGVGPIF 134 (212)
T ss_pred cccCC----------------HHHHHHHcC---CCC------EEEEeCCCHHHHHHHh----HcCCCEEEECCcc
Confidence 22100 111122211 222 3343 34777665443 6799999987655
|
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=87.10 E-value=16 Score=35.48 Aligned_cols=167 Identities=20% Similarity=0.241 Sum_probs=92.5
Q ss_pred CchhHHHHHHHHHHCCCcEEEEEeee--C----CCCCcccHHHHHHHHHHHHhhC--CCcEEEEecCCCCCChHHHHHHH
Q 017179 158 DPDEPTNVAEAIASWGLDYVVITSVD--R----DDLADQGSGHFAQTVRKLKELK--PNMLIEALVPDFRGNNGCVREVA 229 (376)
Q Consensus 158 ~~eEi~~~a~al~~~G~~eIvLTsg~--r----~dl~d~g~~~~~elvr~Ik~~~--p~i~Ie~l~pd~~g~~e~l~~L~ 229 (376)
++++..+.|+.+.+.|++.|-|.-.- . +.+. ...+.+.++++++++.. | +.+. +.|+.....+.++.+.
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~-~~~~~~~eiv~~vr~~~~~P-v~vK-l~~~~~~~~~~a~~~~ 176 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG-TDPEAVAEIVKAVKKATDVP-VIVK-LTPNVTDIVEIARAAE 176 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc-CCHHHHHHHHHHHHhccCCC-EEEE-eCCCchhHHHHHHHHH
Confidence 37889999999999999988885431 0 1111 12466788999998863 3 4444 4555422245567788
Q ss_pred HcCcccccc-c--------ccchHHHH----HhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-C-CCHHHHHH
Q 017179 230 KSGLNVFAH-N--------IETVEELQ----SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-G-ETPDQVVS 294 (376)
Q Consensus 230 ~aGld~i~h-~--------lEtv~~l~----~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-G-ET~ee~~e 294 (376)
++|+|.+.. | .++..... .-+. ........++.++.+++.. +++ |+|- | .+.+|+.+
T Consensus 177 ~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~s-g~~~~~~~~~~i~~i~~~~--~ip-----ii~~GGI~~~~da~~ 248 (296)
T cd04740 177 EAGADGLTLINTLKGMAIDIETRKPILGNVTGGLS-GPAIKPIALRMVYQVYKAV--EIP-----IIGVGGIASGEDALE 248 (296)
T ss_pred HcCCCEEEEECCCcccccccccCceeecCCcceec-CcccchHHHHHHHHHHHhc--CCC-----EEEECCCCCHHHHHH
Confidence 899986532 1 11110000 0011 1122334677777777742 122 3333 3 57788887
Q ss_pred HHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhh
Q 017179 295 TMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (376)
Q Consensus 295 ~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (376)
.|. .|.|.|-++..+ .. -| .+..+-.+.+.++..+.||..+
T Consensus 249 ~l~----~GAd~V~igra~---l~-~p---~~~~~i~~~l~~~~~~~g~~~~ 289 (296)
T cd04740 249 FLM----AGASAVQVGTAN---FV-DP---EAFKEIIEGLEAYLDEEGIKSI 289 (296)
T ss_pred HHH----cCCCEEEEchhh---hc-Ch---HHHHHHHHHHHHHHHHcCCCCH
Confidence 773 688999887322 11 11 1112234445566667777554
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=87.04 E-value=9.6 Score=39.69 Aligned_cols=129 Identities=21% Similarity=0.288 Sum_probs=81.4
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
++-.+.++++.+.|++-|+|+.-++. ..+..+.|+.|++.+|++.|-+ ++.. +.+..+.+.++|+|.+..+
T Consensus 223 ~~~~~r~~~L~~aG~d~I~vd~a~g~------~~~~~~~i~~i~~~~~~~~vi~--G~v~-t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 223 EFDKERAEALVKAGVDVIVIDSSHGH------SIYVIDSIKEIKKTYPDLDIIA--GNVA-TAEQAKALIDAGADGLRVG 293 (450)
T ss_pred hhHHHHHHHHHHhCCCEEEEECCCCc------HhHHHHHHHHHHHhCCCCCEEE--EeCC-CHHHHHHHHHhCCCEEEEC
Confidence 34567788999999999999775432 4568899999999888765533 2221 6788999999999998433
Q ss_pred -----ccchHHHHHhhcCCC-CCHHHHHHHHHHHHHhCCCCceEEE--eEEEecCCCHHHHHHHHHHHHHcCCcEEEeec
Q 017179 240 -----IETVEELQSAVRDHR-ANFKQSLDVLMMAKDYVPAGTLTKT--SIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 311 (376)
Q Consensus 240 -----lEtv~~l~~~vr~r~-~t~e~~L~vl~~ak~~~p~Gi~tkt--~imvGlGET~ee~~e~L~~Lrel~vd~v~~~q 311 (376)
+.+.. .+.+.+ ....-..++.+.+++ .|+++-+ +| -+..|+...|. +|.+.|-+|.
T Consensus 294 ~g~G~~~~t~----~~~~~g~p~~~~i~~~~~~~~~---~~vpviadGGi-----~~~~di~kAla----~GA~~V~~G~ 357 (450)
T TIGR01302 294 IGPGSICTTR----IVAGVGVPQITAVYDVAEYAAQ---SGIPVIADGGI-----RYSGDIVKALA----AGADAVMLGS 357 (450)
T ss_pred CCCCcCCccc----eecCCCccHHHHHHHHHHHHhh---cCCeEEEeCCC-----CCHHHHHHHHH----cCCCEEEECc
Confidence 22222 121111 122333344444444 2344322 33 67788877664 5889888886
Q ss_pred CC
Q 017179 312 YM 313 (376)
Q Consensus 312 Y~ 313 (376)
.|
T Consensus 358 ~~ 359 (450)
T TIGR01302 358 LL 359 (450)
T ss_pred hh
Confidence 66
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=86.94 E-value=14 Score=35.60 Aligned_cols=140 Identities=17% Similarity=0.215 Sum_probs=81.2
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCccc---------------HHHHHHHHHHHHhhCCCcEEEE---ecCCC
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQG---------------SGHFAQTVRKLKELKPNMLIEA---LVPDF 218 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g---------------~~~~~elvr~Ik~~~p~i~Ie~---l~pd~ 218 (376)
.+++.-.+.++++.+.|++-|-|----.|-+.||. .+.+.+++++|++..+++.+-. .-|-+
T Consensus 21 P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~ 100 (256)
T TIGR00262 21 PTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIF 100 (256)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHh
Confidence 46788888899999999988877433333344431 2467788888886533333222 22322
Q ss_pred C-CChHHHHHHHHcCcccccccc---cchHHHHHhhcC----------CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEe
Q 017179 219 R-GNNGCVREVAKSGLNVFAHNI---ETVEELQSAVRD----------HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG 284 (376)
Q Consensus 219 ~-g~~e~l~~L~~aGld~i~h~l---Etv~~l~~~vr~----------r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvG 284 (376)
. |.++.++.++++|+|.+-..- |...++...++. +..+.++...+++.+ .|+.-.-+.. |
T Consensus 101 ~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~-----~gfiy~vs~~-G 174 (256)
T TIGR00262 101 RKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKS-----QGFVYLVSRA-G 174 (256)
T ss_pred hhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhC-----CCCEEEEECC-C
Confidence 2 336779999999999865542 333445444331 222333333333322 2454443444 8
Q ss_pred c-CCC---HHHHHHHHHHHHHc
Q 017179 285 C-GET---PDQVVSTMEKVRAA 302 (376)
Q Consensus 285 l-GET---~ee~~e~L~~Lrel 302 (376)
+ |+. ..++.+.++.++++
T Consensus 175 ~TG~~~~~~~~~~~~i~~lr~~ 196 (256)
T TIGR00262 175 VTGARNRAASALNELVKRLKAY 196 (256)
T ss_pred CCCCcccCChhHHHHHHHHHhh
Confidence 8 763 46678888888875
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.78 E-value=8.8 Score=36.15 Aligned_cols=112 Identities=23% Similarity=0.296 Sum_probs=81.3
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.++||.+..++++.+-|++-|-||= |. ++ -.+.|+.+++.+|++.|.+=+ -+ +.+.++.+.++|.+.+
T Consensus 22 ~~~e~a~~~a~Ali~gGi~~IEITl--~s--p~-----a~e~I~~l~~~~p~~lIGAGT-VL--~~~q~~~a~~aGa~fi 89 (211)
T COG0800 22 DDVEEALPLAKALIEGGIPAIEITL--RT--PA-----ALEAIRALAKEFPEALIGAGT-VL--NPEQARQAIAAGAQFI 89 (211)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEec--CC--CC-----HHHHHHHHHHhCcccEEcccc-cc--CHHHHHHHHHcCCCEE
Confidence 5789999999999999999888873 11 11 367899999999976665422 11 6889999999998865
Q ss_pred cccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
|. ++.+ -++++.+.+ .|+.+.-+++ |.-|+...+ ++|.+.+.||
T Consensus 90 -------------Vs-P~~~----~ev~~~a~~---~~ip~~PG~~-----TptEi~~Al----e~G~~~lK~F 133 (211)
T COG0800 90 -------------VS-PGLN----PEVAKAANR---YGIPYIPGVA-----TPTEIMAAL----ELGASALKFF 133 (211)
T ss_pred -------------EC-CCCC----HHHHHHHHh---CCCcccCCCC-----CHHHHHHHH----HcChhheeec
Confidence 22 2322 256777777 4677777774 888877655 5677777776
|
|
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=86.54 E-value=22 Score=31.36 Aligned_cols=131 Identities=13% Similarity=0.156 Sum_probs=78.7
Q ss_pred CchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCC--cEEE--EecCC----CCCChHHHHHHH
Q 017179 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN--MLIE--ALVPD----FRGNNGCVREVA 229 (376)
Q Consensus 158 ~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~--i~Ie--~l~pd----~~g~~e~l~~L~ 229 (376)
+.+.+.+.++.+.+.|++-|+++| ++++.+.+..++ +.+- +-.+. .....+.++...
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g---------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~ 75 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP---------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAI 75 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH---------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHH
Confidence 788899999999999999988876 234444333332 3332 22222 111345677888
Q ss_pred HcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEe
Q 017179 230 KSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (376)
Q Consensus 230 ~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~ 309 (376)
++|+|.+... .-.|... ..+.+..++.++.+.+..+.++++....+.+.--+.+++.+..+.+.+.+++.+..
T Consensus 76 ~~Gad~i~v~----~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~ 148 (201)
T cd00945 76 DLGADEIDVV----INIGSLK---EGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKT 148 (201)
T ss_pred HcCCCEEEEe----ccHHHHh---CCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEe
Confidence 8888876431 1112111 11245555555555553212466665555444346788888888888899999887
Q ss_pred e
Q 017179 310 G 310 (376)
Q Consensus 310 ~ 310 (376)
+
T Consensus 149 ~ 149 (201)
T cd00945 149 S 149 (201)
T ss_pred C
Confidence 4
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=86.48 E-value=3.4 Score=41.85 Aligned_cols=135 Identities=21% Similarity=0.309 Sum_probs=83.4
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
++-.+.++++.+.|++.++|-+-+. -..+..+.|+.||+.+|++.|- .+.. .+.+..+.|.++|+|.+-.+
T Consensus 107 ~~~~er~~~L~~agvD~ivID~a~g------~s~~~~~~ik~ik~~~~~~~vi--aGNV-~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 107 DDDFERAEALVEAGVDVIVIDSAHG------HSEHVIDMIKKIKKKFPDVPVI--AGNV-VTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp TCHHHHHHHHHHTT-SEEEEE-SST------TSHHHHHHHHHHHHHSTTSEEE--EEEE--SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHHHHHcCCCEEEccccCc------cHHHHHHHHHHHHHhCCCceEE--eccc-CCHHHHHHHHHcCCCEEEEe
Confidence 4457788889999999999966542 2678999999999999976553 2322 16788999999999998666
Q ss_pred cc-chHHHHHhhcC-CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 240 IE-TVEELQSAVRD-HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 240 lE-tv~~l~~~vr~-r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
+= .+--..+.+.. ......-..++-+.++++ |+++-++- | --+.-|+...| ..|-|.|-+|.+|
T Consensus 178 iGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~---~v~iIADG--G-i~~sGDi~KAl----a~GAd~VMlG~ll 243 (352)
T PF00478_consen 178 IGPGSICTTREVTGVGVPQLTAVYECAEAARDY---GVPIIADG--G-IRTSGDIVKAL----AAGADAVMLGSLL 243 (352)
T ss_dssp SSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCT---TSEEEEES--S--SSHHHHHHHH----HTT-SEEEESTTT
T ss_pred ccCCcccccccccccCCcHHHHHHHHHHHhhhc---cCceeecC--C-cCcccceeeee----eecccceeechhh
Confidence 43 11111222221 122344455666666653 45554442 1 15677777665 3677888888666
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=86.14 E-value=3.6 Score=39.18 Aligned_cols=93 Identities=19% Similarity=0.293 Sum_probs=56.3
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCccc---------------HHHHHHHHHHHHhhCCCcEEEE--e-cCCC
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQG---------------SGHFAQTVRKLKELKPNMLIEA--L-VPDF 218 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g---------------~~~~~elvr~Ik~~~p~i~Ie~--l-~pd~ 218 (376)
.+.+...+.++.+.+.|++.+.|-=--.|-+.||. .....+.++.+++.. ++.+.+ . .|-|
T Consensus 11 P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~-~~pv~lm~y~n~~~ 89 (242)
T cd04724 11 PDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN-TIPIVLMGYYNPIL 89 (242)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC-CCCEEEEEecCHHH
Confidence 45688899999999999999988511111122321 125677888887653 233333 2 3323
Q ss_pred C-CChHHHHHHHHcCcccccc---cccchHHHHHhh
Q 017179 219 R-GNNGCVREVAKSGLNVFAH---NIETVEELQSAV 250 (376)
Q Consensus 219 ~-g~~e~l~~L~~aGld~i~h---~lEtv~~l~~~v 250 (376)
. |.++.++.++++|++.+-. ..|..+++.+.+
T Consensus 90 ~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~ 125 (242)
T cd04724 90 QYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAA 125 (242)
T ss_pred HhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHH
Confidence 2 2367789999999997755 344444444443
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.88 E-value=2.5 Score=43.52 Aligned_cols=102 Identities=15% Similarity=0.179 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
|+=....+.++..|++.|+|-|-. |...+..++|+.||+.+|++.|- -++.. +.+..+.|.++|+|.+-.+
T Consensus 250 e~dK~rl~ll~~aGvdvviLDSSq------GnS~~qiemik~iK~~yP~l~Vi--aGNVV-T~~qa~nLI~aGaDgLrVG 320 (503)
T KOG2550|consen 250 DDDKERLDLLVQAGVDVVILDSSQ------GNSIYQLEMIKYIKETYPDLQII--AGNVV-TKEQAANLIAAGADGLRVG 320 (503)
T ss_pred cchhHHHHHhhhcCCcEEEEecCC------CcchhHHHHHHHHHhhCCCceee--cccee-eHHHHHHHHHccCceeEec
Confidence 333455677889999999996543 33678999999999999987662 22221 5788999999999998766
Q ss_pred ccchH-HHHHhhc-CCCCCHHHHHHHHHHHHHh
Q 017179 240 IETVE-ELQSAVR-DHRANFKQSLDVLMMAKDY 270 (376)
Q Consensus 240 lEtv~-~l~~~vr-~r~~t~e~~L~vl~~ak~~ 270 (376)
+=+-. -+.+++. -.+.-.....++.+.|+..
T Consensus 321 MGsGSiCiTqevma~GrpQ~TAVy~va~~A~q~ 353 (503)
T KOG2550|consen 321 MGSGSICITQKVMACGRPQGTAVYKVAEFANQF 353 (503)
T ss_pred cccCceeeeceeeeccCCcccchhhHHHHHHhc
Confidence 43211 1222221 1122334566777777774
|
|
| >cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
Probab=85.78 E-value=23 Score=31.31 Aligned_cols=66 Identities=20% Similarity=0.222 Sum_probs=40.8
Q ss_pred chhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.+++.+.++++.+.|+..|+|.-.+ .....+.+.++.|++......+.+++.+ .++...++|+|.+
T Consensus 11 ~~~~~~~l~~l~~~g~~~i~lr~~~------~~~~~~~~~~~~i~~~~~~~~~~l~~~~------~~~~a~~~g~~~v 76 (196)
T cd00564 11 GEDLLEVVEAALKGGVTLVQLREKD------LSARELLELARALRELCRKYGVPLIIND------RVDLALAVGADGV 76 (196)
T ss_pred cchHHHHHHHHHhcCCCEEEEeCCC------CCHHHHHHHHHHHHHHHHHhCCeEEEeC------hHHHHHHcCCCEE
Confidence 3567788888989999998876332 1233455566666654322334445533 3566778888855
|
TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. |
| >cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR) | Back alignment and domain information |
|---|
Probab=85.72 E-value=11 Score=36.33 Aligned_cols=50 Identities=12% Similarity=0.064 Sum_probs=36.4
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCc------ccHHHHHHHHHHHHhhC
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD------QGSGHFAQTVRKLKELK 206 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d------~g~~~~~elvr~Ik~~~ 206 (376)
.+..++...+..+.+.|++.|++.+||.+...+ .+..+-.++|+.++..+
T Consensus 70 ~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~~ 125 (274)
T cd00537 70 RNRIELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKEN 125 (274)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhc
Confidence 345788888999999999999999998654322 22345667777777654
|
5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease. |
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=84.97 E-value=20 Score=36.02 Aligned_cols=132 Identities=14% Similarity=0.227 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHCCC--cEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccc
Q 017179 161 EPTNVAEAIASWGL--DYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (376)
Q Consensus 161 Ei~~~a~al~~~G~--~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h 238 (376)
+-.+.+.++.+.|+ +-|+|-.-+ +......++|+.|++.+|++.|-+ ++.. +.+....+.++|+|.+-.
T Consensus 97 ~~~~~~~~Lv~ag~~~d~i~iD~a~------gh~~~~~e~I~~ir~~~p~~~vi~--g~V~-t~e~a~~l~~aGad~i~v 167 (326)
T PRK05458 97 DEYDFVDQLAAEGLTPEYITIDIAH------GHSDSVINMIQHIKKHLPETFVIA--GNVG-TPEAVRELENAGADATKV 167 (326)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCC------CchHHHHHHHHHHHhhCCCCeEEE--EecC-CHHHHHHHHHcCcCEEEE
Confidence 34567888888865 988874433 225678899999999998755432 2211 678889999999998754
Q ss_pred cc-cchHHHHHhhcC-CCCCHHHHHHHHHHHHHhCCCCce-EEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 239 NI-ETVEELQSAVRD-HRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 239 ~l-Etv~~l~~~vr~-r~~t~e~~L~vl~~ak~~~p~Gi~-tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
+. .......+.... ...+| -+..+..+.+... ++ +..+- -.+..|+...|. +|.+.|.+|.++
T Consensus 168 g~~~G~~~~t~~~~g~~~~~w--~l~ai~~~~~~~~--ipVIAdGG----I~~~~Di~KaLa----~GA~aV~vG~~~ 233 (326)
T PRK05458 168 GIGPGKVCITKIKTGFGTGGW--QLAALRWCAKAAR--KPIIADGG----IRTHGDIAKSIR----FGATMVMIGSLF 233 (326)
T ss_pred CCCCCcccccccccCCCCCcc--HHHHHHHHHHHcC--CCEEEeCC----CCCHHHHHHHHH----hCCCEEEechhh
Confidence 32 111111111110 11222 2334555555321 21 22222 378888887765 488998888666
|
|
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=84.94 E-value=31 Score=31.74 Aligned_cols=121 Identities=13% Similarity=0.229 Sum_probs=72.2
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.+.+++.+.|++..+.|.+-+++..-+. ...+. .+.++.|++.. ++.|. ..++.-+.+.++.+.++|+|.+
T Consensus 28 ~~~~~~~~~A~~~~~~GA~~l~v~~~~~--~~~g~----~~~~~~i~~~v-~iPi~--~~~~i~~~~~v~~~~~~Gad~v 98 (217)
T cd00331 28 REDFDPVEIAKAYEKAGAAAISVLTEPK--YFQGS----LEDLRAVREAV-SLPVL--RKDFIIDPYQIYEARAAGADAV 98 (217)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeCcc--ccCCC----HHHHHHHHHhc-CCCEE--ECCeecCHHHHHHHHHcCCCEE
Confidence 5778899999999999999997753221 11111 24556665542 33332 3454446678999999999988
Q ss_pred cccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
..+... ...+..-+.++.++.. |+.+ |+.. -+++| ++.+.+.+++++.++
T Consensus 99 ~l~~~~------------~~~~~~~~~~~~~~~~---g~~~----~v~v-~~~~e----~~~~~~~g~~~i~~t 148 (217)
T cd00331 99 LLIVAA------------LDDEQLKELYELAREL---GMEV----LVEV-HDEEE----LERALALGAKIIGIN 148 (217)
T ss_pred EEeecc------------CCHHHHHHHHHHHHHc---CCeE----EEEE-CCHHH----HHHHHHcCCCEEEEe
Confidence 754211 1123334455555552 4433 4433 26665 444556788888775
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >PRK11613 folP dihydropteroate synthase; Provisional | Back alignment and domain information |
|---|
Probab=84.89 E-value=22 Score=34.94 Aligned_cols=139 Identities=12% Similarity=0.136 Sum_probs=79.8
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEee-eCCCCCcc----cHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSV-DRDDLADQ----GSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK 230 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg-~r~dl~d~----g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~ 230 (376)
..+++++++.|+++.+.|.+-|-|=|. .|++...- -.+.+..+|+.|++.. ++.| ++-.+ +.+.++.-.+
T Consensus 34 ~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~-~~~I--SIDT~--~~~va~~AL~ 108 (282)
T PRK11613 34 HNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF-EVWI--SVDTS--KPEVIRESAK 108 (282)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeE--EEECC--CHHHHHHHHH
Confidence 368999999999999999988877443 24443211 1234666777777543 3333 33233 5777888888
Q ss_pred cCcccccc--cccchHHHHHhh----------cCC--------CCCH--------HHHHHHHHHHHHhCCCCc---eEEE
Q 017179 231 SGLNVFAH--NIETVEELQSAV----------RDH--------RANF--------KQSLDVLMMAKDYVPAGT---LTKT 279 (376)
Q Consensus 231 aGld~i~h--~lEtv~~l~~~v----------r~r--------~~t~--------e~~L~vl~~ak~~~p~Gi---~tkt 279 (376)
+|++.+|- ++. .+++++.+ ..+ ...| +..-+.++.+.+ .|+ .+-.
T Consensus 109 ~GadiINDI~g~~-d~~~~~~~a~~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~---~GI~~~~Iil 184 (282)
T PRK11613 109 AGAHIINDIRSLS-EPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEA---AGIAKEKLLL 184 (282)
T ss_pred cCCCEEEECCCCC-CHHHHHHHHHcCCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHH---cCCChhhEEE
Confidence 88888733 121 12222211 100 1111 222344455555 465 3444
Q ss_pred eEEEecCCCHHHHHHHHHHHHHcC
Q 017179 280 SIMLGCGETPDQVVSTMEKVRAAG 303 (376)
Q Consensus 280 ~imvGlGET~ee~~e~L~~Lrel~ 303 (376)
+--+|||.+.++=++.|+.|..+.
T Consensus 185 DPGiGF~k~~~~n~~ll~~l~~l~ 208 (282)
T PRK11613 185 DPGFGFGKNLSHNYQLLARLAEFH 208 (282)
T ss_pred eCCCCcCCCHHHHHHHHHHHHHHH
Confidence 444699999988777777765553
|
|
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=84.83 E-value=21 Score=34.69 Aligned_cols=115 Identities=15% Similarity=0.183 Sum_probs=63.9
Q ss_pred CcccHHHHHHHHHHHHhhCC-CcEEEEecCCCCCChHHHHHHHHcC--cccccccccchHHHHHhhcC-CCCCHHHHHHH
Q 017179 188 ADQGSGHFAQTVRKLKELKP-NMLIEALVPDFRGNNGCVREVAKSG--LNVFAHNIETVEELQSAVRD-HRANFKQSLDV 263 (376)
Q Consensus 188 ~d~g~~~~~elvr~Ik~~~p-~i~Ie~l~pd~~g~~e~l~~L~~aG--ld~i~h~lEtv~~l~~~vr~-r~~t~e~~L~v 263 (376)
...|.+.+.+.++..++..+ .+.+.+.-.+...-.+..+.+.+++ .|.+..|+-.-.. +.... -..+.+...++
T Consensus 71 ~~~g~~~~~~~~~~~~~~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~--~~~g~~l~~~~~~~~ei 148 (300)
T TIGR01037 71 QNPGVEAFLEELKPVREEFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHV--KGGGIAIGQDPELSADV 148 (300)
T ss_pred CCcCHHHHHHHHHHHhccCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCC--CCCccccccCHHHHHHH
Confidence 33356677777766554432 1333332211100134456666553 7877777543221 00000 12467888889
Q ss_pred HHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 264 LMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 264 l~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
++.+++....-+.+|.. -+.+|..+..+.+.+.|+|.+++.
T Consensus 149 v~~vr~~~~~pv~vKi~------~~~~~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 149 VKAVKDKTDVPVFAKLS------PNVTDITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred HHHHHHhcCCCEEEECC------CChhhHHHHHHHHHHcCCCEEEEE
Confidence 99988853111223332 355788999999999999999885
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=84.72 E-value=15 Score=34.62 Aligned_cols=116 Identities=17% Similarity=0.248 Sum_probs=72.8
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCC--cEEEEecCCCCCChHHHHHHHHcCcc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN--MLIEALVPDFRGNNGCVREVAKSGLN 234 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~--i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (376)
.|+-.+.+.++.+.+.|++.+++==-|..-.|...+. .++++.|++..++ +.+++.+-+ ....++.++++|+|
T Consensus 9 ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~tfg--~~~i~~i~~~~~~~~~dvHLMv~~---p~~~i~~~~~~gad 83 (220)
T PRK08883 9 ADFARLGEDVEKVLAAGADVVHFDVMDNHYVPNLTFG--APICKALRDYGITAPIDVHLMVKP---VDRIIPDFAKAGAS 83 (220)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCcccCccccC--HHHHHHHHHhCCCCCEEEEeccCC---HHHHHHHHHHhCCC
Confidence 4566788889999999999999865554333321111 3567777764212 555555532 24568999999999
Q ss_pred cccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHH
Q 017179 235 VFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTM 296 (376)
Q Consensus 235 ~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L 296 (376)
.+....|+.+. ..++|+.+|+ .| .++++.+.-+-..+.+...+
T Consensus 84 ~i~~H~Ea~~~--------------~~~~l~~ik~---~g--~k~GlalnP~Tp~~~i~~~l 126 (220)
T PRK08883 84 MITFHVEASEH--------------VDRTLQLIKE---HG--CQAGVVLNPATPLHHLEYIM 126 (220)
T ss_pred EEEEcccCccc--------------HHHHHHHHHH---cC--CcEEEEeCCCCCHHHHHHHH
Confidence 99998885321 2245555566 35 46677776664555554443
|
|
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=84.57 E-value=8.7 Score=37.29 Aligned_cols=77 Identities=12% Similarity=0.130 Sum_probs=49.4
Q ss_pred hHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHH
Q 017179 222 NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVR 300 (376)
Q Consensus 222 ~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET~ee~~e~L~~Lr 300 (376)
.+.++.+.+.|++.+-.+--+.+ . ..-+.+++.++++.+.+..+. +..+|+|. +.+-+|.++..+..+
T Consensus 25 ~~~i~~l~~~Gv~gi~~~Gs~GE-----~--~~ls~~Er~~~~~~~~~~~~~----~~~vi~gv~~~~~~~~i~~a~~a~ 93 (292)
T PRK03170 25 RKLVDYLIANGTDGLVVVGTTGE-----S--PTLTHEEHEELIRAVVEAVNG----RVPVIAGTGSNSTAEAIELTKFAE 93 (292)
T ss_pred HHHHHHHHHcCCCEEEECCcCCc-----c--ccCCHHHHHHHHHHHHHHhCC----CCcEEeecCCchHHHHHHHHHHHH
Confidence 44566666777766533212222 1 134677888888877775432 34578888 468888888888888
Q ss_pred HcCCcEEEe
Q 017179 301 AAGVDVMTF 309 (376)
Q Consensus 301 el~vd~v~~ 309 (376)
++|+|.+-+
T Consensus 94 ~~G~d~v~~ 102 (292)
T PRK03170 94 KAGADGALV 102 (292)
T ss_pred HcCCCEEEE
Confidence 888886655
|
|
| >PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=84.47 E-value=13 Score=34.97 Aligned_cols=82 Identities=23% Similarity=0.375 Sum_probs=55.2
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEE-ecCCCCCChHHHHHHHHcCccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA-LVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~-l~pd~~g~~e~l~~L~~aGld~ 235 (376)
.|+..+.+.++.+.+.|++.+++==-|..-.|..... .+.|+.|++..|++.+.+ +.++- ....++.+.++|+|.
T Consensus 16 ~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G--~~~v~~lr~~~~~~~lDvHLm~~~--p~~~i~~~~~~Gad~ 91 (228)
T PTZ00170 16 ADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFG--PPVVKSLRKHLPNTFLDCHLMVSN--PEKWVDDFAKAGASQ 91 (228)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCcC--HHHHHHHHhcCCCCCEEEEECCCC--HHHHHHHHHHcCCCE
Confidence 4666788889999999999999866554333331111 467888887666654433 22322 345678999999999
Q ss_pred ccccccc
Q 017179 236 FAHNIET 242 (376)
Q Consensus 236 i~h~lEt 242 (376)
+....|+
T Consensus 92 itvH~ea 98 (228)
T PTZ00170 92 FTFHIEA 98 (228)
T ss_pred EEEeccC
Confidence 9887664
|
|
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=84.35 E-value=16 Score=34.56 Aligned_cols=128 Identities=15% Similarity=0.080 Sum_probs=72.2
Q ss_pred chhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccc
Q 017179 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (376)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h 238 (376)
..+|++.|+.+.+.|+++++|.=-+. .. |...-.++|+.|.+.. .+.+.+-- ..+ +.|.++.+..+|++.+-.
T Consensus 34 ~~dp~~~a~~~~~~g~~~l~i~DLd~--~~--~~~~n~~~i~~i~~~~-~~~v~vgG-Gir-~~edv~~~l~~Ga~~vii 106 (233)
T cd04723 34 TSDPLDVARAYKELGFRGLYIADLDA--IM--GRGDNDEAIRELAAAW-PLGLWVDG-GIR-SLENAQEWLKRGASRVIV 106 (233)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEeCcc--cc--CCCccHHHHHHHHHhC-CCCEEEec-CcC-CHHHHHHHHHcCCCeEEE
Confidence 45789999999999999999873332 11 1223466788887653 23333222 222 678899999999887665
Q ss_pred cccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCC-CceEEEeEEEec---CCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 239 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPA-GTLTKTSIMLGC---GETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 239 ~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~-Gi~tkt~imvGl---GET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
+-++.+ . +.++.+-+.++. -+.+.-++-=|. -++..+..+.++.+.+. ++.+.+.
T Consensus 107 gt~~~~--------------~--~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~ 165 (233)
T cd04723 107 GTETLP--------------S--DDDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELLRRLAKW-PEELIVL 165 (233)
T ss_pred cceecc--------------c--hHHHHHHHhcCCCCeEEEEeccCCeeccccCcCCHHHHHHHHHHh-CCeEEEE
Confidence 544322 1 233333333332 122333322110 02444566667777777 7766664
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=84.27 E-value=19 Score=35.28 Aligned_cols=52 Identities=15% Similarity=0.238 Sum_probs=36.9
Q ss_pred HHHHHHHHHhCCCCceEEEeEEEe----cCCCHHHHHHHHHHHHHcCCcEEEeecC
Q 017179 261 LDVLMMAKDYVPAGTLTKTSIMLG----CGETPDQVVSTMEKVRAAGVDVMTFGQY 312 (376)
Q Consensus 261 L~vl~~ak~~~p~Gi~tkt~imvG----lGET~ee~~e~L~~Lrel~vd~v~~~qY 312 (376)
+++++.+++..+.++.+...+=.+ -|.+.+|.++.++.|.+.++|++.+...
T Consensus 195 ~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g 250 (327)
T cd02803 195 LEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGG 250 (327)
T ss_pred HHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 678888888764434333322211 2568999999999999999999998643
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.20 E-value=3.9 Score=43.07 Aligned_cols=133 Identities=17% Similarity=0.349 Sum_probs=83.2
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
+++.+.++++.+.|++-|+|-.-++. .....++|+.||+.+|++.| .-++.. +.+..+.|.++|+|.+..+
T Consensus 226 ~~~~~~a~~Lv~aGvd~i~~D~a~~~------~~~~~~~i~~ik~~~p~~~v--~agnv~-t~~~a~~l~~aGad~v~vg 296 (479)
T PRK07807 226 GDVAAKARALLEAGVDVLVVDTAHGH------QEKMLEALRAVRALDPGVPI--VAGNVV-TAEGTRDLVEAGADIVKVG 296 (479)
T ss_pred hhHHHHHHHHHHhCCCEEEEeccCCc------cHHHHHHHHHHHHHCCCCeE--EeeccC-CHHHHHHHHHcCCCEEEEC
Confidence 56778899999999999988655443 35689999999999998655 333332 6788899999999998654
Q ss_pred ccc----hHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 240 IET----VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 240 lEt----v~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
+=+ .-+.+--+. ...+.-..++.+.+++ .|+++ |.=|=--+..|+...|. +|.+.+-+|.+|
T Consensus 297 ig~gsictt~~~~~~~--~p~~~av~~~~~~~~~---~~~~v---ia~ggi~~~~~~~~al~----~ga~~v~~g~~~ 362 (479)
T PRK07807 297 VGPGAMCTTRMMTGVG--RPQFSAVLECAAAARE---LGAHV---WADGGVRHPRDVALALA----AGASNVMIGSWF 362 (479)
T ss_pred ccCCcccccccccCCc--hhHHHHHHHHHHHHHh---cCCcE---EecCCCCCHHHHHHHHH----cCCCeeeccHhh
Confidence 432 112222222 1233333444444444 23332 12223367777776665 577777776665
|
|
| >KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=83.86 E-value=13 Score=37.67 Aligned_cols=135 Identities=16% Similarity=0.161 Sum_probs=82.1
Q ss_pred hhHHHHHHHHHHCCC----cEEEEEeeeCCCCCcccHHHHHHHH-HHH------------Hh--h----CCCcEEEEecC
Q 017179 160 DEPTNVAEAIASWGL----DYVVITSVDRDDLADQGSGHFAQTV-RKL------------KE--L----KPNMLIEALVP 216 (376)
Q Consensus 160 eEi~~~a~al~~~G~----~eIvLTsg~r~dl~d~g~~~~~elv-r~I------------k~--~----~p~i~Ie~l~p 216 (376)
++....++++..+|- -+.++-||.--.+|+.-.++|..-+ .++ +- . .-+++|+ --|
T Consensus 153 ~QaR~Rv~QLk~LGHsvDKVE~i~MGGTFMsLPe~YRd~FI~nLHdALSGhts~~v~EAv~yse~s~tKCiGiTIE-TRP 231 (554)
T KOG2535|consen 153 LQARGRVEQLKQLGHSVDKVEFIVMGGTFMSLPEEYRDYFIRNLHDALSGHTSANVEEAVKYSERSLTKCIGITIE-TRP 231 (554)
T ss_pred HHHHHHHHHHHHhCCccceeEEEEecceeecChHHHHHHHHHHHHHHhcCCCccCHHHHHHhhhhccceeeeEEee-cCc
Confidence 445566888999884 3556667753344432222332222 111 10 0 0123443 235
Q ss_pred CCCCChHHHHHHHHcCcccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec--CCCHHHHH
Q 017179 217 DFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC--GETPDQVV 293 (376)
Q Consensus 217 d~~g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl--GET~ee~~ 293 (376)
|+- ....|..+..-|...+.++++.+ +.+-+.-+ |+++....-+....++. .|+++-++||--+ ---+.|+.
T Consensus 232 DyC-~~~Hl~~ML~YGCTRlEiGVQS~YEDVARDTN-RGHTV~aVce~F~laKD---aG~KvV~HMMPdLPNVg~eRDie 306 (554)
T KOG2535|consen 232 DYC-LKRHLSDMLTYGCTRLEIGVQSVYEDVARDTN-RGHTVKAVCESFHLAKD---AGFKVVAHMMPDLPNVGMERDIE 306 (554)
T ss_pred ccc-hhhhHHHHHhcCCceEEeccchhHHHhhhccc-CCccHHHHHHHhhhhhc---cCceeehhhCCCCCCCchhhhHH
Confidence 653 35668888888998888887654 46655556 89999999999999998 6899999999665 22233444
Q ss_pred HHHHHHH
Q 017179 294 STMEKVR 300 (376)
Q Consensus 294 e~L~~Lr 300 (376)
+..++..
T Consensus 307 qF~E~Fe 313 (554)
T KOG2535|consen 307 QFKEYFE 313 (554)
T ss_pred HHHHHhc
Confidence 4444443
|
|
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=83.69 E-value=12 Score=36.77 Aligned_cols=91 Identities=16% Similarity=0.173 Sum_probs=60.0
Q ss_pred CcEEEEecCCC-CC--C----hHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017179 208 NMLIEALVPDF-RG--N----NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (376)
Q Consensus 208 ~i~Ie~l~pd~-~g--~----~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~ 280 (376)
++..-.++|-- .+ | ...++.+.+.|++.+-.+=-|.+ . ..-+.+++.++++.+.+.... +..
T Consensus 10 Gv~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE-----~--~~Lt~eEr~~~~~~~~~~~~~----~~p 78 (303)
T PRK03620 10 GLLSFPVTPFDADGSFDEAAYREHLEWLAPYGAAALFAAGGTGE-----F--FSLTPDEYSQVVRAAVETTAG----RVP 78 (303)
T ss_pred ceEEeeeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcC-----c--ccCCHHHHHHHHHHHHHHhCC----CCc
Confidence 45555666621 11 2 45567777778776533211222 1 235678899999988875432 456
Q ss_pred EEEecCCCHHHHHHHHHHHHHcCCcEEEe
Q 017179 281 IMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (376)
Q Consensus 281 imvGlGET~ee~~e~L~~Lrel~vd~v~~ 309 (376)
+|+|.|.+.+|.++..+...++|+|.+-+
T Consensus 79 vi~gv~~~t~~~i~~~~~a~~~Gadav~~ 107 (303)
T PRK03620 79 VIAGAGGGTAQAIEYAQAAERAGADGILL 107 (303)
T ss_pred EEEecCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 78888668899999999999999997765
|
|
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=83.68 E-value=25 Score=33.97 Aligned_cols=17 Identities=0% Similarity=0.188 Sum_probs=10.3
Q ss_pred CCCCHHHHHHHHHHHHH
Q 017179 253 HRANFKQSLDVLMMAKD 269 (376)
Q Consensus 253 r~~t~e~~L~vl~~ak~ 269 (376)
.+.+.++.++.++.+++
T Consensus 69 ~G~~~~~~~~~~~~~r~ 85 (258)
T PRK13111 69 AGVTLADVFELVREIRE 85 (258)
T ss_pred cCCCHHHHHHHHHHHHh
Confidence 35566666666666663
|
|
| >PRK02227 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.96 E-value=29 Score=33.30 Aligned_cols=161 Identities=19% Similarity=0.240 Sum_probs=97.3
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCc-EEEEecCCCC-----CChHHHHH
Q 017179 154 PPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM-LIEALVPDFR-----GNNGCVRE 227 (376)
Q Consensus 154 ~~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i-~Ie~l~pd~~-----g~~e~l~~ 227 (376)
..+..+.++...+..+...|++||-+ |.....-.+.-.+.+..+++.++...++. .|-++..|+. ...+.+..
T Consensus 61 D~p~~p~~~~~aa~~~a~~GvDyVKv-Gl~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~ 139 (238)
T PRK02227 61 DVPYKPGTISLAALGAAATGADYVKV-GLYGGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAI 139 (238)
T ss_pred CCCCCchHHHHHHHHHHhhCCCEEEE-cCCCCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHH
Confidence 44567788888888899999999976 22111100001223444456666555543 5556666653 23566777
Q ss_pred HHHcCcccccccccchH----HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHc
Q 017179 228 VAKSGLNVFAHNIETVE----ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAA 302 (376)
Q Consensus 228 L~~aGld~i~h~lEtv~----~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET~ee~~e~L~~Lrel 302 (376)
.+++|.+. .+++|.. .+|..| +.++--+.++.+|+ .| +|.|| |-=. .+.+..|+.+
T Consensus 140 a~~aGf~g--~MlDTa~Kdg~~Lfd~l-----~~~~L~~Fv~~ar~---~G------l~~gLAGSL~---~~dip~L~~l 200 (238)
T PRK02227 140 AADAGFDG--AMLDTAIKDGKSLFDHM-----DEEELAEFVAEARS---HG------LMSALAGSLK---FEDIPALKRL 200 (238)
T ss_pred HHHcCCCE--EEEecccCCCcchHhhC-----CHHHHHHHHHHHHH---cc------cHhHhcccCc---hhhHHHHHhc
Confidence 88888663 3578753 566554 46777788888887 34 56677 5332 3456677999
Q ss_pred CCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHH
Q 017179 303 GVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRAL 337 (376)
Q Consensus 303 ~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~ 337 (376)
+.|++.|---+--.. .-...+.|++...|++.
T Consensus 201 ~pD~lGfRgavC~g~---dR~~~id~~~V~~~~~~ 232 (238)
T PRK02227 201 GPDILGVRGAVCGGG---DRTGRIDPELVAELREA 232 (238)
T ss_pred CCCEEEechhccCCC---CcccccCHHHHHHHHHH
Confidence 999999832221111 01124568887777654
|
|
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=82.66 E-value=18 Score=34.12 Aligned_cols=168 Identities=18% Similarity=0.209 Sum_probs=95.7
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
....+|++.|+.+.+.|+++++|.=-+. .. .|...-.++|+.|.+..+ +.+.+=-+ .+ +.+.++.+.++|++.+
T Consensus 26 ~~~~dP~~~a~~~~~~g~~~l~ivDLda--a~-~g~~~n~~~i~~i~~~~~-~~i~vgGG-Ir-s~ed~~~ll~~Ga~~V 99 (229)
T PF00977_consen 26 VYSGDPVEVAKAFNEQGADELHIVDLDA--AK-EGRGSNLELIKEIAKETG-IPIQVGGG-IR-SIEDAERLLDAGADRV 99 (229)
T ss_dssp CECCCHHHHHHHHHHTT-SEEEEEEHHH--HC-CTHHHHHHHHHHHHHHSS-SEEEEESS-E--SHHHHHHHHHTT-SEE
T ss_pred EECcCHHHHHHHHHHcCCCEEEEEEccC--cc-cCchhHHHHHHHHHhcCC-ccEEEeCc-cC-cHHHHHHHHHhCCCEE
Confidence 3456788899999999999999873221 11 133445688888888754 55543222 22 6888999999999977
Q ss_pred cccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCC-CceEEEeEEEe-----cCCC---HHHHHHHHHHHHHcCCcEE
Q 017179 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPA-GTLTKTSIMLG-----CGET---PDQVVSTMEKVRAAGVDVM 307 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~-Gi~tkt~imvG-----lGET---~ee~~e~L~~Lrel~vd~v 307 (376)
-.+-++.+ + .+.++.+.+.++. -+.+.-++.-| .|.. .-+..+.++.+.+.++..+
T Consensus 100 vigt~~~~-------~--------~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g~~~i 164 (229)
T PF00977_consen 100 VIGTEALE-------D--------PELLEELAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEELGAGEI 164 (229)
T ss_dssp EESHHHHH-------C--------CHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHTT-SEE
T ss_pred EeChHHhh-------c--------hhHHHHHHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhcCCcEE
Confidence 66544322 0 0222222222221 13333333333 3333 4578899999999999887
Q ss_pred EeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhccchhHhh
Q 017179 308 TFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRS 354 (376)
Q Consensus 308 ~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrs 354 (376)
-+..--+- ++. .. | .++.+++++.......+++| =|||
T Consensus 165 i~tdi~~d---Gt~-~G---~-d~~~~~~l~~~~~~~viasG-Gv~~ 202 (229)
T PF00977_consen 165 ILTDIDRD---GTM-QG---P-DLELLKQLAEAVNIPVIASG-GVRS 202 (229)
T ss_dssp EEEETTTT---TTS-SS------HHHHHHHHHHHSSEEEEES-S--S
T ss_pred EEeecccc---CCc-CC---C-CHHHHHHHHHHcCCCEEEec-CCCC
Confidence 66422222 221 11 2 35667777777777778887 4444
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=82.50 E-value=41 Score=31.86 Aligned_cols=130 Identities=11% Similarity=0.100 Sum_probs=76.3
Q ss_pred hhHHHHHHHHHH-CCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccc
Q 017179 160 DEPTNVAEAIAS-WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (376)
Q Consensus 160 eEi~~~a~al~~-~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h 238 (376)
.+|.+.|+...+ .|+++++|.=-+. .. .|...-.++|++|.+. ..+.|.+ -+..+ +.|.++.+.++|++.+-.
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l~ivDLd~--a~-~~~~~n~~~I~~i~~~-~~~pi~v-GGGIr-s~e~v~~~l~~Ga~kvvi 104 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRIHIVDLIG--AK-AQHAREFDYIKSLRRL-TTKDIEV-GGGIR-TKSQIMDYFAAGINYCIV 104 (234)
T ss_pred CCHHHHHHHHHhccCCCEEEEEECcc--cc-cCCcchHHHHHHHHhh-cCCeEEE-cCCcC-CHHHHHHHHHCCCCEEEE
Confidence 366778888888 5999999873221 11 1223356788888763 3344432 12222 788899999999998866
Q ss_pred cccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE----EEecC---CCHHHHHHHHHHHHHcCCcEEEee
Q 017179 239 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI----MLGCG---ETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 239 ~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~i----mvGlG---ET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
+-++.+ ..+.++.+.+.+|..+.+.-+. ++-.| ++.-+..+.++.+.++++..+-+.
T Consensus 105 gt~a~~---------------~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~t 168 (234)
T PRK13587 105 GTKGIQ---------------DTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYT 168 (234)
T ss_pred CchHhc---------------CHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEEe
Confidence 644332 1234444444444323333332 22122 355566788888888888766554
|
|
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=82.22 E-value=7.7 Score=37.57 Aligned_cols=77 Identities=10% Similarity=0.196 Sum_probs=53.1
Q ss_pred hHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHH
Q 017179 222 NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVR 300 (376)
Q Consensus 222 ~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET~ee~~e~L~~Lr 300 (376)
.+.++.+.+.|++.+-.+--+.+ . ..-+.+++.++++.+.+..+. +.-+|+|. +.+-+|.++..+..+
T Consensus 25 ~~~i~~l~~~Gv~gl~~~GstGE-----~--~~Lt~~Er~~l~~~~~~~~~~----~~~vi~gv~~~st~~~i~~a~~a~ 93 (289)
T PF00701_consen 25 KRLIDFLIEAGVDGLVVLGSTGE-----F--YSLTDEERKELLEIVVEAAAG----RVPVIAGVGANSTEEAIELARHAQ 93 (289)
T ss_dssp HHHHHHHHHTTSSEEEESSTTTT-----G--GGS-HHHHHHHHHHHHHHHTT----SSEEEEEEESSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEECCCCcc-----c--ccCCHHHHHHHHHHHHHHccC----ceEEEecCcchhHHHHHHHHHHHh
Confidence 45566677778776543322222 1 134678889999998885432 45589999 679999999999999
Q ss_pred HcCCcEEEe
Q 017179 301 AAGVDVMTF 309 (376)
Q Consensus 301 el~vd~v~~ 309 (376)
++|+|.+-+
T Consensus 94 ~~Gad~v~v 102 (289)
T PF00701_consen 94 DAGADAVLV 102 (289)
T ss_dssp HTT-SEEEE
T ss_pred hcCceEEEE
Confidence 999997655
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >KOG2368 consensus Hydroxymethylglutaryl-CoA lyase [Energy production and conversion; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.20 E-value=20 Score=34.34 Aligned_cols=145 Identities=17% Similarity=0.266 Sum_probs=96.0
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCC-CcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDL-ADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl-~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
++.+--++.++.+.+.|+.-|--||--.+.. |. ...-.++++.|++ +|++...+|+|... -++.-.++|+.-
T Consensus 37 vpt~vKveLI~~Lse~Gl~~vEtTSFVSpKWVPQ--l~D~~ev~k~i~~-~~Gv~yPVLtPNlk----Gf~~AvaaGa~E 109 (316)
T KOG2368|consen 37 VPTEVKVELIDRLSECGLQVVETTSFVSPKWVPQ--LADHNEVMKGIRK-FPGVSYPVLTPNLK----GFEAAVAAGAEE 109 (316)
T ss_pred CCchHHHHHHHHHHHcCCceeeeecccCcccccc--ccchHHHHHhhhc-CCCccccccCcchh----hHHHHHhcCcee
Confidence 3333346778899999999888887643322 22 1224678888865 68899899999764 466677888877
Q ss_pred ccccccchHHHHHhhcCCCCCH----HHHHHHHHHHHHhCCCCceE--EEeEEEec-CC---CHHHHHHHHHHHHHcCCc
Q 017179 236 FAHNIETVEELQSAVRDHRANF----KQSLDVLMMAKDYVPAGTLT--KTSIMLGC-GE---TPDQVVSTMEKVRAAGVD 305 (376)
Q Consensus 236 i~h~lEtv~~l~~~vr~r~~t~----e~~L~vl~~ak~~~p~Gi~t--kt~imvGl-GE---T~ee~~e~L~~Lrel~vd 305 (376)
+...--.++ .|..-+ -..+. .++.++++.|++. ++++ --+..+|. -| +++-+.+..+.|.+.++.
T Consensus 110 vavFgaASe-~FslkN-iNctiees~~rf~~v~kaA~~~---ni~vRGYVScvvGCPyeG~v~P~kVa~V~k~ly~mGCy 184 (316)
T KOG2368|consen 110 VAVFGAASE-AFSLKN-INCTIEESLKRFMEVLKAAQEH---NIRVRGYVSCVVGCPYEGAVQPSKVAEVVKKLYEMGCY 184 (316)
T ss_pred EEeeehhhh-hhhhcc-CCccHHHHHHHHHHHHHHHHHc---CCccceEEEEEecCCccCCcCHHHHHHHHHHHHhCCcE
Confidence 766433333 222211 12344 4455677777773 4554 45678888 44 688999999999999998
Q ss_pred EEEeecCC
Q 017179 306 VMTFGQYM 313 (376)
Q Consensus 306 ~v~~~qY~ 313 (376)
.|.+|.-+
T Consensus 185 EiSLGDTI 192 (316)
T KOG2368|consen 185 EISLGDTI 192 (316)
T ss_pred EEeccccc
Confidence 88776443
|
|
| >TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form | Back alignment and domain information |
|---|
Probab=82.17 E-value=9.7 Score=36.86 Aligned_cols=111 Identities=12% Similarity=0.117 Sum_probs=66.5
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCC----CcccHHHHHHHHHHHHhhCCCcEEEE-ecCCCC---CC-hHHHH-
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDL----ADQGSGHFAQTVRKLKELKPNMLIEA-LVPDFR---GN-NGCVR- 226 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl----~d~g~~~~~elvr~Ik~~~p~i~Ie~-l~pd~~---g~-~e~l~- 226 (376)
.+..++......+.+.|++.|++.+||.+.. +.+.+.+-.++|+.|++.+++..|.+ ..|+-. .+ .+.++
T Consensus 70 ~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~ 149 (272)
T TIGR00676 70 ATREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIEN 149 (272)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHH
Confidence 4677888888899999999999877775421 12334556788888888777777764 555421 11 12233
Q ss_pred --HHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec
Q 017179 227 --EVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 285 (376)
Q Consensus 227 --~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl 285 (376)
.=.++|++.+ |.-.-++.+.+.+.++.+++ .|+ +.-|+.|+
T Consensus 150 L~~K~~aGA~f~-------------iTQ~~fd~~~~~~~~~~~~~---~gi--~~PIi~Gi 192 (272)
T TIGR00676 150 LKRKVDAGADYA-------------ITQLFFDNDDYYRFVDRCRA---AGI--DVPIIPGI 192 (272)
T ss_pred HHHHHHcCCCeE-------------eeccccCHHHHHHHHHHHHH---cCC--CCCEeccc
Confidence 3336676632 11123455666666666666 243 23466666
|
This protein is an FAD-containing flavoprotein. |
| >PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=82.12 E-value=24 Score=33.86 Aligned_cols=162 Identities=20% Similarity=0.296 Sum_probs=96.8
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCc-EEEEecCCCCC-----ChHHHHH
Q 017179 154 PPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM-LIEALVPDFRG-----NNGCVRE 227 (376)
Q Consensus 154 ~~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i-~Ie~l~pd~~g-----~~e~l~~ 227 (376)
..++.|..+...+...+..|++||-+==-...+. +...+.+..++++++...++. .|-++..|+.. ..+..+.
T Consensus 61 Dlp~~p~~~~~aa~~~a~~GvdyvKvGl~g~~~~-~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~ 139 (235)
T PF04476_consen 61 DLPMKPGTASLAALGAAATGVDYVKVGLFGCKDY-DEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEI 139 (235)
T ss_pred CCCCCchHHHHHHHHHHhcCCCEEEEecCCCCCH-HHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHH
Confidence 4456677777667777788999998621101111 112344555667777665544 55667777631 2455667
Q ss_pred HHHcCcccccccccchH----HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHc
Q 017179 228 VAKSGLNVFAHNIETVE----ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAA 302 (376)
Q Consensus 228 L~~aGld~i~h~lEtv~----~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET~ee~~e~L~~Lrel 302 (376)
++++|.+ ...++|.. .+|..| +.++--+.++.+|+ .| ++.|| |-=. .+.+..|+.+
T Consensus 140 a~~aG~~--gvMlDTa~Kdg~~L~d~~-----~~~~L~~Fv~~ar~---~g------L~~aLAGSL~---~~di~~L~~l 200 (235)
T PF04476_consen 140 AAEAGFD--GVMLDTADKDGGSLFDHL-----SEEELAEFVAQARA---HG------LMCALAGSLR---FEDIPRLKRL 200 (235)
T ss_pred HHHcCCC--EEEEecccCCCCchhhcC-----CHHHHHHHHHHHHH---cc------chhhccccCC---hhHHHHHHhc
Confidence 7888865 34678763 455544 46777888888888 34 56677 5332 3456677789
Q ss_pred CCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHH
Q 017179 303 GVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRAL 337 (376)
Q Consensus 303 ~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~ 337 (376)
+.|++.|---+=-+ +.--...+.|++...|++.
T Consensus 201 ~pD~lGfRGAvC~g--gdR~~G~id~~~V~~lr~~ 233 (235)
T PF04476_consen 201 GPDILGFRGAVCGG--GDRRAGRIDPELVAALRAL 233 (235)
T ss_pred CCCEEEechhhCCC--CCcCccccCHHHHHHHHHh
Confidence 99999983222111 0111123568888877754
|
|
| >PRK02227 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=81.95 E-value=50 Score=31.74 Aligned_cols=167 Identities=14% Similarity=0.144 Sum_probs=99.7
Q ss_pred HHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCC-cEEEEecCCCCCCh----HHHHHHHHcCccccccc
Q 017179 165 VAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN-MLIEALVPDFRGNN----GCVREVAKSGLNVFAHN 239 (376)
Q Consensus 165 ~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~-i~Ie~l~pd~~g~~----e~l~~L~~aGld~i~h~ 239 (376)
+|....+.|.+-|-+==-.+.. .| ..+..+|++|.+..++ ..|..-++|+-..+ ..+..+..+|+|.+-.+
T Consensus 12 EA~~Al~~GaDiIDvK~P~~Ga---LG-A~~p~vir~Iv~~~~~~~pvSAtiGD~p~~p~~~~~aa~~~a~~GvDyVKvG 87 (238)
T PRK02227 12 EALEALAGGADIIDVKNPKEGS---LG-ANFPWVIREIVAAVPGRKPVSATIGDVPYKPGTISLAALGAAATGADYVKVG 87 (238)
T ss_pred HHHHHHhcCCCEEEccCCCCCC---CC-CCCHHHHHHHHHHhCCCCCceeeccCCCCCchHHHHHHHHHHhhCCCEEEEc
Confidence 3445567777766332111111 13 2467888888877654 67777777764332 23455667888887665
Q ss_pred ccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCH----HHHHHHHHHHHHcCCcEEEeecCCCC
Q 017179 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETP----DQVVSTMEKVRAAGVDVMTFGQYMRP 315 (376)
Q Consensus 240 lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~----ee~~e~L~~Lrel~vd~v~~~qY~~P 315 (376)
+- +..++++.+++++...+..+.--.-+.-+-+|+-+.. -.-.+.+..+.+.+++.+-+=.+.
T Consensus 88 l~-----------~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlDTa~-- 154 (238)
T PRK02227 88 LY-----------GGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLDTAI-- 154 (238)
T ss_pred CC-----------CCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCCCEEEEeccc--
Confidence 42 2344555555554433221110112344555554411 023366777889999988885443
Q ss_pred CCCCCCCcccCChHHHHHHHHHHHHHhhhhhccc
Q 017179 316 SKRHMPVSEYITPEAFERYRALGMEMGFRYVASG 349 (376)
Q Consensus 316 ~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sg 349 (376)
+.+..+.+++..++...+-+.+++.|......|
T Consensus 155 -Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~~gLAG 187 (238)
T PRK02227 155 -KDGKSLFDHMDEEELAEFVAEARSHGLMSALAG 187 (238)
T ss_pred -CCCcchHhhCCHHHHHHHHHHHHHcccHhHhcc
Confidence 566777788889999999999998888776655
|
|
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=81.64 E-value=7.7 Score=38.30 Aligned_cols=118 Identities=16% Similarity=0.255 Sum_probs=73.5
Q ss_pred HHHHHHHHcCcccccccccc-hHHHHHhhcC--CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHH
Q 017179 223 GCVREVAKSGLNVFAHNIET-VEELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKV 299 (376)
Q Consensus 223 e~l~~L~~aGld~i~h~lEt-v~~l~~~vr~--r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~L 299 (376)
+..+.+.+.|.|.+..|+=. ++.+.+.=.+ --.+.+...++++.+++..+ ++++.-|=+|..++.++.++.++.|
T Consensus 70 ~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~--~pvsvKiR~g~~~~~~~~~~~~~~l 147 (309)
T PF01207_consen 70 EAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVP--IPVSVKIRLGWDDSPEETIEFARIL 147 (309)
T ss_dssp HHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-S--SEEEEEEESECT--CHHHHHHHHHH
T ss_pred HHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccc--cceEEecccccccchhHHHHHHHHh
Confidence 34455555588888888653 3444443110 01357888888888888643 6888888889998999999999999
Q ss_pred HHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhccc
Q 017179 300 RAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASG 349 (376)
Q Consensus 300 rel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sg 349 (376)
.+.|++.+++. + .++...|-.+...+.+.++........++.|
T Consensus 148 ~~~G~~~i~vH----~---Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NG 190 (309)
T PF01207_consen 148 EDAGVSAITVH----G---RTRKQRYKGPADWEAIAEIKEALPIPVIANG 190 (309)
T ss_dssp HHTT--EEEEE----C---S-TTCCCTS---HHHHHHCHHC-TSEEEEES
T ss_pred hhcccceEEEe----c---CchhhcCCcccchHHHHHHhhcccceeEEcC
Confidence 99999999996 3 2455555446677777777777666666666
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=81.57 E-value=43 Score=32.94 Aligned_cols=136 Identities=16% Similarity=0.157 Sum_probs=83.0
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.+.+.+..+++++.+.+.--|+-++...-++ .|.. +..+++.+.+.. .+.|- +.-|+..+.+.+....++|.+++
T Consensus 21 ~n~e~~~avi~AAee~~sPvIl~~~~~~~~~--~~~~-~~~~~~~~a~~~-~vPV~-lHLDHg~~~e~i~~ai~~Gf~SV 95 (283)
T PRK08185 21 ADSCFLRAVVEEAEANNAPAIIAIHPNELDF--LGDN-FFAYVRERAKRS-PVPFV-IHLDHGATIEDVMRAIRCGFTSV 95 (283)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeCcchhhh--ccHH-HHHHHHHHHHHC-CCCEE-EECCCCCCHHHHHHHHHcCCCEE
Confidence 4678888888889898887777666543222 2334 788888877655 24433 45566557888999999997664
Q ss_pred cccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceE--EEeEEEecCCCH------H----HHHHHHHHHHHcCC
Q 017179 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLT--KTSIMLGCGETP------D----QVVSTMEKVRAAGV 304 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~t--kt~imvGlGET~------e----e~~e~L~~Lrel~v 304 (376)
.++.+.- |-..+.+...++++.++.. |+.+ .-+. +|..|.. + +..+..+++++.++
T Consensus 96 --M~D~S~l------~~eeNi~~t~~vv~~a~~~---gv~vE~ElG~-vg~~e~~~~~~~~~~~~t~peea~~f~~~Tgv 163 (283)
T PRK08185 96 --MIDGSLL------PYEENVALTKEVVELAHKV---GVSVEGELGT-IGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGV 163 (283)
T ss_pred --EEeCCCC------CHHHHHHHHHHHHHHHHHc---CCeEEEEEee-ccCcccccccccccccCCCHHHHHHHHHhhCC
Confidence 3332220 0011233445666666663 4443 4444 4432211 1 56677888899999
Q ss_pred cEEEe
Q 017179 305 DVMTF 309 (376)
Q Consensus 305 d~v~~ 309 (376)
|.+-+
T Consensus 164 D~LAv 168 (283)
T PRK08185 164 DTLAV 168 (283)
T ss_pred CEEEe
Confidence 98777
|
|
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=81.36 E-value=4.2 Score=39.47 Aligned_cols=47 Identities=9% Similarity=0.292 Sum_probs=22.4
Q ss_pred hHHHHHHHHcCcccccccc-------c--chH-HHHHhhcCCCCCHHHHHHHHHHHHH
Q 017179 222 NGCVREVAKSGLNVFAHNI-------E--TVE-ELQSAVRDHRANFKQSLDVLMMAKD 269 (376)
Q Consensus 222 ~e~l~~L~~aGld~i~h~l-------E--tv~-~l~~~vr~r~~t~e~~L~vl~~ak~ 269 (376)
.+.++.|.++|+|.+..++ | +.. .-.+.+. .+.+.++.++.++.+++
T Consensus 27 ~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~-~G~~~~~~~~~~~~ir~ 83 (259)
T PF00290_consen 27 LEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALK-NGFTLEKIFELVKEIRK 83 (259)
T ss_dssp HHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHH-TT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHH-CCCCHHHHHHHHHHHhc
Confidence 4455555556666654442 1 111 2222334 46666777777777763
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=81.21 E-value=24 Score=35.42 Aligned_cols=54 Identities=20% Similarity=0.298 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhCCCCceEE--EeEEEec--CCCHHHHHHHHHHHHHcCCcEEEeec
Q 017179 258 KQSLDVLMMAKDYVPAGTLTK--TSIMLGC--GETPDQVVSTMEKVRAAGVDVMTFGQ 311 (376)
Q Consensus 258 e~~L~vl~~ak~~~p~Gi~tk--t~imvGl--GET~ee~~e~L~~Lrel~vd~v~~~q 311 (376)
+-.+++++.+++..+..+.+. .+..=.. |.+.+|.++.++.|.+.++|++++..
T Consensus 188 r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~ 245 (353)
T cd02930 188 RFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGI 245 (353)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 444677888888765434333 2211011 46889999999999999999999853
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=81.12 E-value=59 Score=32.01 Aligned_cols=169 Identities=15% Similarity=0.150 Sum_probs=100.3
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCC-CcEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NMLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p-~i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
.+.+.+..++++..+.+.--|+-++...-.+. .|...+..+++.+.+... .+.|. +.-|+..+.+.+....++|-.+
T Consensus 26 ~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~VPV~-lHLDHg~~~e~i~~ai~~GftS 103 (285)
T PRK07709 26 NNLEWTQAILAAAEEEKSPVILGVSEGAARHM-TGFKTVVAMVKALIEEMNITVPVA-IHLDHGSSFEKCKEAIDAGFTS 103 (285)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEcCcchhhhc-CCHHHHHHHHHHHHHHcCCCCcEE-EECCCCCCHHHHHHHHHcCCCE
Confidence 45677788888888888776665554322220 346778888888877542 23333 5556665778888888998665
Q ss_pred ccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec--CCCH---------HHHHHHHHHHHHcC
Q 017179 236 FAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC--GETP---------DQVVSTMEKVRAAG 303 (376)
Q Consensus 236 i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl--GET~---------ee~~e~L~~Lrel~ 303 (376)
+ ++|.+. .+ ..+.+...++++.||.. |+.+-.- +|. |+.+ -+-.+..+|+++.|
T Consensus 104 V--M~DgS~lp~-------eeNi~~Trevv~~Ah~~---gv~VEaE--lG~igg~ed~~~~~~~~yT~peeA~~Fv~~Tg 169 (285)
T PRK07709 104 V--MIDASHHPF-------EENVETTKKVVEYAHAR---NVSVEAE--LGTVGGQEDDVIAEGVIYADPAECKHLVEATG 169 (285)
T ss_pred E--EEeCCCCCH-------HHHHHHHHHHHHHHHHc---CCEEEEE--EeccCCccCCcccccccCCCHHHHHHHHHHhC
Confidence 4 445443 21 12345566888888883 6554332 233 2222 36778899999999
Q ss_pred CcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhh
Q 017179 304 VDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (376)
Q Consensus 304 vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (376)
+|.+-+. + +.-|-.-.. .+.=.|++|+++....+...|
T Consensus 170 vD~LAva--i--Gt~HG~Y~~-~p~L~~~~L~~I~~~~~iPLV 207 (285)
T PRK07709 170 IDCLAPA--L--GSVHGPYKG-EPNLGFAEMEQVRDFTGVPLV 207 (285)
T ss_pred CCEEEEe--e--cccccCcCC-CCccCHHHHHHHHHHHCCCEE
Confidence 9986653 1 112211111 111246677777776666443
|
|
| >COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=81.04 E-value=19 Score=36.27 Aligned_cols=149 Identities=21% Similarity=0.290 Sum_probs=88.4
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.|.+.-++.+.++.++|.+-|.+|-.+ .. -++.+.+|++..+ +. |..|+.-+...+....+.|+|-+
T Consensus 33 ~Dv~aTv~QI~~L~~aG~dIVRvtv~~---~e------~A~A~~~Ik~~~~-vP---LVaDiHf~~rla~~~~~~g~~k~ 99 (361)
T COG0821 33 ADVEATVAQIKALERAGCDIVRVTVPD---ME------AAEALKEIKQRLN-VP---LVADIHFDYRLALEAAECGVDKV 99 (361)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEecCC---HH------HHHHHHHHHHhCC-CC---EEEEeeccHHHHHHhhhcCcceE
Confidence 466677777888899999998887432 22 2567778887652 21 34444335666677777777766
Q ss_pred cccccchHHHHHhhcCCCCC-HHHHHHHHHHHHHhCCCCceEEEeEEEec----------CCCHHHHH----HHHHHHHH
Q 017179 237 AHNIETVEELQSAVRDHRAN-FKQSLDVLMMAKDYVPAGTLTKTSIMLGC----------GETPDQVV----STMEKVRA 301 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t-~e~~L~vl~~ak~~~p~Gi~tkt~imvGl----------GET~ee~~----e~L~~Lre 301 (376)
-+ +|.... .++.-++++.|++ .|+++..++=-|- +-|.|.++ .+.+.+.+
T Consensus 100 RI------------NPGNig~~~~v~~vVe~Ak~---~g~piRIGVN~GSLek~~~~ky~~pt~ealveSAl~~a~~~e~ 164 (361)
T COG0821 100 RI------------NPGNIGFKDRVREVVEAAKD---KGIPIRIGVNAGSLEKRLLEKYGGPTPEALVESALEHAELLEE 164 (361)
T ss_pred EE------------CCcccCcHHHHHHHHHHHHH---cCCCEEEecccCchhHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 43 343333 3457788899998 4677766654332 12223322 33456777
Q ss_pred cCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhh
Q 017179 302 AGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFR 344 (376)
Q Consensus 302 l~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~ 344 (376)
++++-+-+. .++..+ ..-.+.|+.+|...-+.
T Consensus 165 l~f~~i~iS------~K~Sdv-----~~~v~aYr~lA~~~dyP 196 (361)
T COG0821 165 LGFDDIKVS------VKASDV-----QLMVAAYRLLAKRCDYP 196 (361)
T ss_pred CCCCcEEEE------EEcCCH-----HHHHHHHHHHHHhcCCC
Confidence 787755553 122222 23566677777766553
|
|
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=80.86 E-value=11 Score=35.37 Aligned_cols=78 Identities=19% Similarity=0.310 Sum_probs=46.4
Q ss_pred CchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHH-HHHHHHHHhhCCC-cEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHF-AQTVRKLKELKPN-MLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 158 ~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~-~elvr~Ik~~~p~-i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
++..+.+.++++.+.|++.++|=--|....+. ..| .++++.|++.... +.+++.+-+ ..+.++.+.++|+|.
T Consensus 18 ~~~~l~~~l~~~~~~g~~~ihld~~d~~f~~~---~~~g~~~~~~l~~~~~~~~~vhlmv~~---p~d~~~~~~~~gad~ 91 (229)
T PLN02334 18 DFANLAEEAKRVLDAGADWLHVDVMDGHFVPN---LTIGPPVVKALRKHTDAPLDCHLMVTN---PEDYVPDFAKAGASI 91 (229)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCcCCc---cccCHHHHHHHHhcCCCcEEEEeccCC---HHHHHHHHHHcCCCE
Confidence 44578888999999999999982111110111 000 1677778765211 245545522 145678888999998
Q ss_pred cccccc
Q 017179 236 FAHNIE 241 (376)
Q Consensus 236 i~h~lE 241 (376)
+...+|
T Consensus 92 v~vH~~ 97 (229)
T PLN02334 92 FTFHIE 97 (229)
T ss_pred EEEeec
Confidence 855444
|
|
| >cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll | Back alignment and domain information |
|---|
Probab=80.78 E-value=13 Score=36.99 Aligned_cols=54 Identities=24% Similarity=0.445 Sum_probs=42.2
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCc-cc------HHHHHHHHHHHHhhCCCcEE
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD-QG------SGHFAQTVRKLKELKPNMLI 211 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d-~g------~~~~~elvr~Ik~~~p~i~I 211 (376)
.++.+++++.++.+.++|++-|.|=|+. +..| .| ..-+...|+.||+.+|++.|
T Consensus 47 r~s~d~l~~~~~~~~~~Gi~~v~LFgv~--~~Kd~~gs~A~~~~g~v~~air~iK~~~p~l~v 107 (314)
T cd00384 47 RLSVDSLVEEAEELADLGIRAVILFGIP--EHKDEIGSEAYDPDGIVQRAIRAIKEAVPELVV 107 (314)
T ss_pred eeCHHHHHHHHHHHHHCCCCEEEEECCC--CCCCCCcccccCCCChHHHHHHHHHHhCCCcEE
Confidence 4799999999999999999999999983 1222 11 12367899999999998765
|
This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste |
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=80.60 E-value=8.1 Score=38.93 Aligned_cols=68 Identities=19% Similarity=0.286 Sum_probs=48.7
Q ss_pred HHHHHHHHHC--CCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 163 TNVAEAIASW--GLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 163 ~~~a~al~~~--G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
.+.++++.+. |++.|+|-+- .+-..++.+.|+.||+.+|+..| +-++.. +.+..+.|.++|+|.+-.+
T Consensus 109 ~er~~~L~~a~~~~d~iviD~A------hGhs~~~i~~ik~ir~~~p~~~v--iaGNV~-T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 109 LEKMTSILEAVPQLKFICLDVA------NGYSEHFVEFVKLVREAFPEHTI--MAGNVV-TGEMVEELILSGADIVKVG 178 (343)
T ss_pred HHHHHHHHhcCCCCCEEEEECC------CCcHHHHHHHHHHHHhhCCCCeE--EEeccc-CHHHHHHHHHcCCCEEEEc
Confidence 3556667666 5899998543 33367899999999999987544 222221 6788999999999988443
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=80.49 E-value=21 Score=34.75 Aligned_cols=139 Identities=15% Similarity=0.199 Sum_probs=78.7
Q ss_pred CchhHHHHHHHHHHCC-CcEEEEEeee------CCCCCcccHHHHHHHHHHHHhhCCCcEEEE-ecCCCCCChHHHHHHH
Q 017179 158 DPDEPTNVAEAIASWG-LDYVVITSVD------RDDLADQGSGHFAQTVRKLKELKPNMLIEA-LVPDFRGNNGCVREVA 229 (376)
Q Consensus 158 ~~eEi~~~a~al~~~G-~~eIvLTsg~------r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~-l~pd~~g~~e~l~~L~ 229 (376)
++++..+.|+.+.+.| ++.|-|--+- ...+. ...+.+.++|+++++.. ++.|-+ +.|++....+.++.+.
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~-~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~a~~l~ 179 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFG-TDPELAYEVVKAVKEVV-KVPVIVKLTPNVTDIVEIAKAAE 179 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccc-cCHHHHHHHHHHHHHhc-CCCEEEEcCCCchhHHHHHHHHH
Confidence 4789999999999998 8988773221 01111 12467889999999864 233332 3444421245567788
Q ss_pred HcCcccccc-c--------ccchHHHH----HhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec--CCCHHHHHH
Q 017179 230 KSGLNVFAH-N--------IETVEELQ----SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC--GETPDQVVS 294 (376)
Q Consensus 230 ~aGld~i~h-~--------lEtv~~l~----~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl--GET~ee~~e 294 (376)
++|+|.+.. | +++..... .-+. ........++.+..+++.. +++ ++|. -.|.++..+
T Consensus 180 ~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~s-g~~~~p~~l~~v~~i~~~~--~ip-----vi~~GGI~~~~da~~ 251 (301)
T PRK07259 180 EAGADGLSLINTLKGMAIDIKTRKPILANVTGGLS-GPAIKPIALRMVYQVYQAV--DIP-----IIGMGGISSAEDAIE 251 (301)
T ss_pred HcCCCEEEEEccccccccccccCceeecCCcCccC-CcCcccccHHHHHHHHHhC--CCC-----EEEECCCCCHHHHHH
Confidence 899886532 1 11110000 0011 1111223567777777742 122 3344 368888888
Q ss_pred HHHHHHHcCCcEEEee
Q 017179 295 TMEKVRAAGVDVMTFG 310 (376)
Q Consensus 295 ~L~~Lrel~vd~v~~~ 310 (376)
.|. .|.|.|-++
T Consensus 252 ~l~----aGAd~V~ig 263 (301)
T PRK07259 252 FIM----AGASAVQVG 263 (301)
T ss_pred HHH----cCCCceeEc
Confidence 773 578888886
|
|
| >COG4474 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.47 E-value=3 Score=37.88 Aligned_cols=53 Identities=28% Similarity=0.323 Sum_probs=43.8
Q ss_pred chhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCC
Q 017179 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPD 217 (376)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd 217 (376)
.+-|.+..+++.+.|++.++|||..+-++ +-++++..|++.+|.+.+-+++|-
T Consensus 28 Kkai~~~l~~lleeGleW~litGqLG~E~------WA~Evv~eLk~eyp~ik~avitpF 80 (180)
T COG4474 28 KKAIKKKLEALLEEGLEWVLITGQLGFEL------WAAEVVIELKEEYPHIKLAVITPF 80 (180)
T ss_pred HHHHHHHHHHHHhcCceEEEEeccccHHH------HHHHHHHHHHhhCCCeeEEEEech
Confidence 36677888999999999999999654322 357899999999999999999983
|
|
| >TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type | Back alignment and domain information |
|---|
Probab=80.34 E-value=14 Score=36.01 Aligned_cols=110 Identities=12% Similarity=0.112 Sum_probs=64.4
Q ss_pred CchhHHHHHHHHHHCCCcEEEEEeeeCCCC------CcccHHHHHHHHHHHHhhCCC-cEEEE-ecCCCC---CChH-HH
Q 017179 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDL------ADQGSGHFAQTVRKLKELKPN-MLIEA-LVPDFR---GNNG-CV 225 (376)
Q Consensus 158 ~~eEi~~~a~al~~~G~~eIvLTsg~r~dl------~d~g~~~~~elvr~Ik~~~p~-i~Ie~-l~pd~~---g~~e-~l 225 (376)
+.+++...+..+.+.|++.|++.+||.+.. +.+.+++-.++|+.|++..+. ..|.+ ..|+-. .+.+ .+
T Consensus 72 ~~~~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~~~~d~ 151 (281)
T TIGR00677 72 PIEMIDDALERAYSNGIQNILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAESVELDL 151 (281)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCCCHHHHH
Confidence 456888888888999999998888886421 223456677889998876543 55553 444321 1222 23
Q ss_pred HHHH---HcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec
Q 017179 226 REVA---KSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 285 (376)
Q Consensus 226 ~~L~---~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl 285 (376)
+.|+ ++|+|.+ . .-.-++.+.+.+.++.+++ .|+ +.-||.|+
T Consensus 152 ~~L~~Ki~aGA~f~-i------------TQ~~Fd~~~~~~f~~~~~~---~gi--~~PIi~GI 196 (281)
T TIGR00677 152 KYLKEKVDAGADFI-I------------TQLFYDVDNFLKFVNDCRA---IGI--DCPIVPGI 196 (281)
T ss_pred HHHHHHHHcCCCEe-e------------ccceecHHHHHHHHHHHHH---cCC--CCCEEeec
Confidence 3333 5776633 1 1112455666666666666 232 23456666
|
This protein is an FAD-containing flavoprotein. |
| >PLN02540 methylenetetrahydrofolate reductase | Back alignment and domain information |
|---|
Probab=80.32 E-value=23 Score=38.18 Aligned_cols=51 Identities=14% Similarity=0.116 Sum_probs=39.5
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCC------cccHHHHHHHHHHHHhhCC
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLA------DQGSGHFAQTVRKLKELKP 207 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~------d~g~~~~~elvr~Ik~~~p 207 (376)
++.+++...+..+.+.|++.|+...||.+.-. ++++.+-.++|+.|++.+.
T Consensus 70 ~n~~~L~~~L~~a~~~GIrNILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~g 126 (565)
T PLN02540 70 MPVEKIDHALETIKSNGIQNILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYG 126 (565)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCC
Confidence 45678888888899999999988888754221 2456778899999998764
|
|
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=80.25 E-value=42 Score=32.02 Aligned_cols=162 Identities=15% Similarity=0.230 Sum_probs=89.8
Q ss_pred chhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccc
Q 017179 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (376)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h 238 (376)
..+|++.|+...+.|+++++|.=-+.. . .|...-.++|++|.+.. ..+.+ -+-.+ +.+.++.+.++|++.+-.
T Consensus 29 ~~dP~~~A~~~~~~ga~~lhivDLd~a-~--~g~~~n~~~i~~i~~~~--~~v~v-GGGIr-s~e~~~~~l~~Ga~rvvi 101 (241)
T PRK14114 29 EKDPAELVEKLIEEGFTLIHVVDLSKA-I--ENSVENLPVLEKLSEFA--EHIQI-GGGIR-SLDYAEKLRKLGYRRQIV 101 (241)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEECCCc-c--cCCcchHHHHHHHHhhc--CcEEE-ecCCC-CHHHHHHHHHCCCCEEEE
Confidence 358899999999999999999733321 1 12334567888887653 22221 11222 678899999999998766
Q ss_pred cccchH--HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE----EEecC---CCHHHHHHHHHHHHHcCCcEEEe
Q 017179 239 NIETVE--ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI----MLGCG---ETPDQVVSTMEKVRAAGVDVMTF 309 (376)
Q Consensus 239 ~lEtv~--~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~i----mvGlG---ET~ee~~e~L~~Lrel~vd~v~~ 309 (376)
+-++++ ++.+.+ .+ ++..+.+.-++ ++--| .|.-+..+.++.+.+.++..+-+
T Consensus 102 gT~a~~~p~~l~~~-----------------~~-~~~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~ 163 (241)
T PRK14114 102 SSKVLEDPSFLKFL-----------------KE-IDVEPVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVH 163 (241)
T ss_pred CchhhCCHHHHHHH-----------------HH-hCCCEEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHhcCCCEEEE
Confidence 644332 233322 11 11112222221 22112 35667888889999999987766
Q ss_pred ecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhccchhHhh
Q 017179 310 GQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRS 354 (376)
Q Consensus 310 ~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrs 354 (376)
..--+- ++. .. | .++.+++++..-....++|| =|||
T Consensus 164 tdI~rd---Gt~-~G---~-d~el~~~l~~~~~~pviasG-Gv~s 199 (241)
T PRK14114 164 TEIEKD---GTL-QE---H-DFSLTRKIAIEAEVKVFAAG-GISS 199 (241)
T ss_pred Eeechh---hcC-CC---c-CHHHHHHHHHHCCCCEEEEC-CCCC
Confidence 422222 221 11 1 24445555554455555666 3444
|
|
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=80.20 E-value=62 Score=31.85 Aligned_cols=169 Identities=14% Similarity=0.116 Sum_probs=97.4
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.+.+.+..+++++.+.+.--|+-++...-.+ .|...+..+++.+.+.. .+.|- +.-|+..+.+.+..-.++|.+++
T Consensus 26 ~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~--~~~~~~~~~~~~~a~~~-~vpV~-lHlDH~~~~e~i~~Ai~~GftSV 101 (286)
T PRK06801 26 LDSHFLRALFAAAKQERSPFIINIAEVHFKY--ISLESLVEAVKFEAARH-DIPVV-LNLDHGLHFEAVVRALRLGFSSV 101 (286)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEeCcchhhc--CCHHHHHHHHHHHHHHC-CCCEE-EECCCCCCHHHHHHHHHhCCcEE
Confidence 3577788888888888876666555533222 34778999998887765 24333 44466546788888889998776
Q ss_pred cccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceE--EEeEEEecCCC------------HHHHHHHHHHHHHc
Q 017179 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLT--KTSIMLGCGET------------PDQVVSTMEKVRAA 302 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~t--kt~imvGlGET------------~ee~~e~L~~Lrel 302 (376)
-+ +.+.. +-..+.+...++.+.|+.. |+.+ -.+.+ | |+. ..+..+..++.++.
T Consensus 102 m~--D~S~l------~~eeNi~~t~~v~~~a~~~---gv~VE~ElG~v-g-g~e~~v~~~~~~~~~~T~pe~a~~f~~~t 168 (286)
T PRK06801 102 MF--DGSTL------EYEENVRQTREVVKMCHAV---GVSVEAELGAV-G-GDEGGALYGEADSAKFTDPQLARDFVDRT 168 (286)
T ss_pred EE--cCCCC------CHHHHHHHHHHHHHHHHHc---CCeEEeecCcc-c-CCCCCcccCCcccccCCCHHHHHHHHHHH
Confidence 44 22210 0112344455667777773 4433 33332 2 211 11446778888899
Q ss_pred CCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhc
Q 017179 303 GVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVA 347 (376)
Q Consensus 303 ~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~ 347 (376)
++|.+-+.-+-. |..-.. .++-.|+.++++....+.-.|+
T Consensus 169 gvD~LAvaiGt~----Hg~y~~-~~~l~~e~l~~i~~~~~~PLVl 208 (286)
T PRK06801 169 GIDALAVAIGNA----HGKYKG-EPKLDFARLAAIHQQTGLPLVL 208 (286)
T ss_pred CcCEEEeccCCC----CCCCCC-CCCCCHHHHHHHHHhcCCCEEE
Confidence 999988842222 222111 1123566666666555544443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 376 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-10 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.4 bits (148), Expect = 3e-10
Identities = 54/413 (13%), Positives = 119/413 (28%), Gaps = 137/413 (33%)
Query: 42 LRARLASES--PAL--SDFIDLQSNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKK 97
L + + +E P++ +I+ Q + Y+ K + + + Y+++++
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIE-QRDRLYNDNQVFAKYNVSRLQ----------PYLKLRQ 142
Query: 98 KLRELK------LH------------TVCEEAK---CPNLGECW-SGGETGTATATIMIL 135
L EL+ + VC K + W + + + +L
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202
Query: 136 GDTCTR-GCRFCNVKTSRAPPPPDPDEPTNVAEA-----IASWG-------LDYV----- 177
+ + SR+ + + +A + S L V
Sbjct: 203 QKLLYQIDPNWT----SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 178 ----------VITSVDR---DDLADQGSGH------------------FAQTVR-KLKEL 205
++T+ + D L+ + H + + + ++L
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 206 KPNM---------LIEALVPDF--RGNNGCVREVAKSGLNVFAHNIE-TVEELQSAVRDH 253
+ +I + D +N + V L IE ++ L+ A ++
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDN--WKHVNCDKLT---TIIESSLNVLEPA--EY 371
Query: 254 RANFKQSLDVLMMAKD-YVPAGTLTKTSIMLGCG---ETPDQVVSTMEKVRAAGVDVMTF 309
R F + L V ++P L+ ++ VV+ + K
Sbjct: 372 RKMFDR-LSVFP--PSAHIPTILLS----LIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 310 -----GQYMRPSKRHMP---------VSEYITPEAFERYRALGMEMGFRYVAS 348
Y+ K + V Y P+ F+ L +Y S
Sbjct: 425 TISIPSIYLE-LKVKLENEYALHRSIVDHYNIPKTFD-SDDLIPPYLDQYFYS 475
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 376 | |||
| 3t7v_A | 350 | Methylornithine synthase PYLB; TIM-barrel fold, mu | 99.94 | |
| 3iix_A | 348 | Biotin synthetase, putative; adoMet radical, SAM r | 99.92 | |
| 2qgq_A | 304 | Protein TM_1862; alpha-beta protein, structural ge | 99.91 | |
| 1r30_A | 369 | Biotin synthase; SAM radical protein, TIM barrel, | 99.89 | |
| 1olt_A | 457 | Oxygen-independent coproporphyrinogen III oxidase; | 99.73 | |
| 1tv8_A | 340 | MOAA, molybdenum cofactor biosynthesis protein A; | 99.65 | |
| 3c8f_A | 245 | Pyruvate formate-lyase 1-activating enzyme; adoMet | 99.56 | |
| 2yx0_A | 342 | Radical SAM enzyme; predicted tRNA modification en | 99.5 | |
| 2z2u_A | 311 | UPF0026 protein MJ0257; metal binding protein; 2.4 | 99.36 | |
| 2a5h_A | 416 | L-lysine 2,3-aminomutase; radical SAM, four-iron-f | 99.19 | |
| 3rfa_A | 404 | Ribosomal RNA large subunit methyltransferase N; r | 99.09 | |
| 3can_A | 182 | Pyruvate-formate lyase-activating enzyme; structur | 98.37 | |
| 2cw6_A | 298 | Hydroxymethylglutaryl-COA lyase, mitochondrial; HM | 97.85 | |
| 4fhd_A | 368 | Spore photoproduct lyase; partial TIM-barrel, DNA | 97.72 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 97.67 | |
| 1ydo_A | 307 | HMG-COA lyase; TIM-barrel protein, structural geno | 97.64 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 97.64 | |
| 3ble_A | 337 | Citramalate synthase from leptospira interrogans; | 97.05 | |
| 3ewb_X | 293 | 2-isopropylmalate synthase; LEUA, structural genom | 96.69 | |
| 3eeg_A | 325 | 2-isopropylmalate synthase; 11106D, beta barrel, P | 96.67 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 96.49 | |
| 3ivs_A | 423 | Homocitrate synthase, mitochondrial; TIM barrel, m | 96.18 | |
| 3rmj_A | 370 | 2-isopropylmalate synthase; LEUA, truncation, neis | 95.86 | |
| 1rqb_A | 539 | Transcarboxylase 5S subunit; TIM-barrel, carbamyla | 95.71 | |
| 2nx9_A | 464 | Oxaloacetate decarboxylase 2, subunit alpha; carbo | 95.61 | |
| 2ztj_A | 382 | Homocitrate synthase; (beta/alpha)8 TIM barrel, su | 95.35 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 93.8 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 93.79 | |
| 1aj0_A | 282 | DHPS, dihydropteroate synthase; antibiotic, resist | 93.12 | |
| 3dxi_A | 320 | Putative aldolase; TIM barrel, 11107N, PSI2, NYSGX | 92.72 | |
| 1eye_A | 280 | DHPS 1, dihydropteroate synthase I; alpha-beta bar | 92.16 | |
| 2yci_X | 271 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 91.55 | |
| 2y7e_A | 282 | 3-keto-5-aminohexanoate cleavage enzyme; lyase, al | 91.05 | |
| 3chv_A | 284 | Prokaryotic domain of unknown function (DUF849) W | 90.79 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 90.25 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 89.59 | |
| 2vp8_A | 318 | Dihydropteroate synthase 2; RV1207 transferase, fo | 89.18 | |
| 2dqw_A | 294 | Dihydropteroate synthase; dimer, structural genomi | 89.18 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 89.0 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 87.95 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 87.92 | |
| 3no5_A | 275 | Uncharacterized protein; PFAM DUF849 domain contai | 87.79 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 87.68 | |
| 3lot_A | 314 | Uncharacterized protein; protein of unknown functi | 87.26 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 87.18 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 86.48 | |
| 3fst_A | 304 | 5,10-methylenetetrahydrofolate reductase; TIM barr | 86.38 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 86.0 | |
| 3apt_A | 310 | Methylenetetrahydrofolate reductase; TIM barrel, o | 85.88 | |
| 3bg3_A | 718 | Pyruvate carboxylase, mitochondrial; TIM barrel, A | 84.96 | |
| 3tr9_A | 314 | Dihydropteroate synthase; biosynthesis of cofactor | 84.66 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 84.58 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 84.4 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 84.23 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 83.91 | |
| 3e96_A | 316 | Dihydrodipicolinate synthase; structural genomics, | 83.82 | |
| 2y5s_A | 294 | DHPS, dihydropteroate synthase; transferase, folat | 83.7 | |
| 2wje_A | 247 | CPS4B, tyrosine-protein phosphatase CPSB; capsule | 83.7 | |
| 1tx2_A | 297 | DHPS, dihydropteroate synthase; folate biosynthesi | 83.36 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 82.91 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 82.31 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 82.16 | |
| 3hq1_A | 644 | 2-isopropylmalate synthase; LEUA, mycobacterium tu | 82.08 | |
| 3c6c_A | 316 | 3-keto-5-aminohexanoate cleavage enzyme; DUF849 fa | 81.06 | |
| 3e49_A | 311 | Uncharacterized protein DUF849 with A TIM barrel; | 81.05 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 80.58 | |
| 3hbl_A | 1150 | Pyruvate carboxylase; TIM barrel, ligase; HET: BTI | 80.4 |
| >3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-26 Score=226.23 Aligned_cols=235 Identities=15% Similarity=0.234 Sum_probs=179.1
Q ss_pred cHHHHHHHHhh---cChhhhhhhcCCCCcccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCCCCC--CCCchhHHHH
Q 017179 91 KYVQIKKKLRE---LKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPP--PPDPDEPTNV 165 (376)
Q Consensus 91 ~~~~~~~~l~~---~~L~tvce~A~cpn~~ec~~~~~~~~~tat~m~i~d~C~~~C~FC~v~~~r~~~--~l~~eEi~~~ 165 (376)
+..++..++.. .+|..+++.|+-.+.. .+|+. -...+++.++++|+.+|.||+++...... .++++|+++.
T Consensus 24 ~~~e~~~l~~~~~~~~~~~L~~~A~~~r~~-~~g~~---v~~~~~i~~t~~C~~~C~fC~~~~~~~~~~~~ls~eei~~~ 99 (350)
T 3t7v_A 24 TDNDLRTLLSLESKEGLERLYSAARKVRDH-YFGNR---VFLNCFIYFSTYCKNQCSFCYYNCRNEINRYRLTMEEIKET 99 (350)
T ss_dssp CHHHHHHHHTCCSHHHHHHHHHHHHHHHHH-HHTTE---EEEEEEEEEECCCCCCCTTCTTCTTSCCCCCBCCHHHHHHH
T ss_pred CHHHHHHHhcCCChhHHHHHHHHHHHHHHH-HCCCE---EEEEEeeecCCCcCCCCCcCCCcCcCCCCceeCCHHHHHHH
Confidence 35677777764 3567777777643332 22321 11223466799999999999998654222 3899999999
Q ss_pred HHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccch-H
Q 017179 166 AEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-E 244 (376)
Q Consensus 166 a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv-~ 244 (376)
++.+.+.|+++|+|+||+.+.+. ...+++.++++.|++.++ +.+.+..+.. +.+.++.|+++|++.+.+++|+. +
T Consensus 100 ~~~~~~~G~~~i~l~gGe~p~~~-~~~~~~~~l~~~ik~~~~-i~i~~s~g~~--~~e~l~~L~~aG~~~i~i~lEt~~~ 175 (350)
T 3t7v_A 100 CKTLKGAGFHMVDLTMGEDPYYY-EDPNRFVELVQIVKEELG-LPIMISPGLM--DNATLLKAREKGANFLALYQETYDT 175 (350)
T ss_dssp HHHHTTSCCSEEEEEECCCHHHH-HSTHHHHHHHHHHHHHHC-SCEEEECSSC--CHHHHHHHHHTTEEEEECCCBCSCH
T ss_pred HHHHHHCCCCEEEEeeCCCCccc-cCHHHHHHHHHHHHhhcC-ceEEEeCCCC--CHHHHHHHHHcCCCEEEEeeecCCH
Confidence 99999999999999999755331 014678999999997764 6776544334 78999999999999999999987 6
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcc
Q 017179 245 ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSE 324 (376)
Q Consensus 245 ~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~ 324 (376)
++|++|+ +++++++++++++.+++. |+.+++++|+|+|||.+|+.++++++++++++.++|.+|. | ..++++.+
T Consensus 176 ~~~~~i~-~~~~~~~~l~~i~~a~~~---Gi~v~~~~i~Glget~e~~~~~l~~l~~l~~~~v~~~~f~-p-~~gT~l~~ 249 (350)
T 3t7v_A 176 ELYRKLR-VGQSFDGRVNARRFAKQQ---GYCVEDGILTGVGNDIESTILSLRGMSTNDPDMVRVMTFL-P-QEGTPLEG 249 (350)
T ss_dssp HHHHHHS-TTCCHHHHHHHHHHHHHH---TCEEEEEEEESSSCCHHHHHHHHHHHHHTCCSEEEEEECC-C-CTTSTTTT
T ss_pred HHHHHhC-CCCCHHHHHHHHHHHHHc---CCeEccceEeecCCCHHHHHHHHHHHHhCCCCEEEeccee-e-CCCCcCcc
Confidence 9999999 589999999999999995 7999999999999999999999999999999999997665 5 35677665
Q ss_pred cCChHHHHHHHHHHH
Q 017179 325 YITPEAFERYRALGM 339 (376)
Q Consensus 325 ~v~pe~~~~l~~~a~ 339 (376)
...+...+.++.+|.
T Consensus 250 ~~~~~~~e~l~~ia~ 264 (350)
T 3t7v_A 250 FRDKSNLSELKIISV 264 (350)
T ss_dssp CCCCCCCCHHHHHHH
T ss_pred CCCCChHHHHHHHHH
Confidence 433333333343433
|
| >3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-23 Score=203.85 Aligned_cols=227 Identities=16% Similarity=0.293 Sum_probs=177.5
Q ss_pred cHHHHHHHHhhcC---hhhhhhhcCCCCcccccCCCCCCccEEE---EeeeCCccCCCCcCCCCCCCCCC-C--CCCchh
Q 017179 91 KYVQIKKKLRELK---LHTVCEEAKCPNLGECWSGGETGTATAT---IMILGDTCTRGCRFCNVKTSRAP-P--PPDPDE 161 (376)
Q Consensus 91 ~~~~~~~~l~~~~---L~tvce~A~cpn~~ec~~~~~~~~~tat---~m~i~d~C~~~C~FC~v~~~r~~-~--~l~~eE 161 (376)
+..++..++...+ +..+++.|+-.+.. .+|+ ..+ ++.++++|+.+|.||.+....+. . .++++|
T Consensus 16 ~~~e~~~ll~~~~~~~~~~l~~~A~~ir~~-~~g~------~v~~~~~i~~t~~C~~~C~fC~~~~~~~~~~~~~ls~ee 88 (348)
T 3iix_A 16 TREVLKEALSINDRGFNEALFKLADEIRRK-YVGD------EVHIRAIIEFSNVCRKNCLYCGLRRDNKNLKRYRMTPEE 88 (348)
T ss_dssp CHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-HHCS------EEEEEEEEEEECCCSCCCTTCTTCTTCCSSCCCBCCHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-HcCC------EEEEEEEeEecCCcCCcCccCCCCCCCCCcCceeCCHHH
Confidence 4567777776543 56677776644432 2332 333 25679999999999998865422 1 379999
Q ss_pred HHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccccc
Q 017179 162 PTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIE 241 (376)
Q Consensus 162 i~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lE 241 (376)
+++.++.+.+.|+++|+|+||+.+.+. .+++.++++.|++. ++.|.+..+.. +++.++.|+++|++.+.+++|
T Consensus 89 i~~~i~~~~~~g~~~i~~~gGe~p~~~---~~~~~~li~~i~~~--~~~i~~s~g~l--~~e~l~~L~~ag~~~v~i~le 161 (348)
T 3iix_A 89 IVERARLAVQFGAKTIVLQSGEDPYXM---PDVISDIVKEIKKM--GVAVTLSLGEW--PREYYEKWKEAGADRYLLRHE 161 (348)
T ss_dssp HHHHHHHHHHTTCSEEEEEESCCGGGT---THHHHHHHHHHHTT--SCEEEEECCCC--CHHHHHHHHHHTCCEEECCCB
T ss_pred HHHHHHHHHHCCCCEEEEEeCCCCCcc---HHHHHHHHHHHHhc--CceEEEecCCC--CHHHHHHHHHhCCCEEeeeee
Confidence 999999999999999999999855443 46799999999886 67777544444 789999999999999999999
Q ss_pred ch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCC
Q 017179 242 TV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRH 319 (376)
Q Consensus 242 tv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~ 319 (376)
+. +++++.++ ++.+++++++.++.+++ .|+.+.+++|+|+ |||.+++.++++++++++++.+.+.+|. | ..+
T Consensus 162 t~~~~~~~~i~-~~~~~~~~~~~i~~~~~---~Gi~v~~~~i~G~p~et~e~~~~~~~~l~~l~~~~i~i~~~~-p-~~g 235 (348)
T 3iix_A 162 TANPVLHRKLR-PDTSFENRLNCLLTLKE---LGYETGAGSMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFI-P-HPD 235 (348)
T ss_dssp CSCHHHHHHHS-TTSCHHHHHHHHHHHHH---TTCEEEECBEESCTTCCHHHHHHHHHHHHHHTCSEECCEECC-C-CTT
T ss_pred eCCHHHHHHhC-CCcCHHHHHHHHHHHHH---hCCeeccceEEeCCCCCHHHHHHHHHHHHhcCCCEEeeeeee-c-CCC
Confidence 87 59999999 56799999999999999 5899999999999 9999999999999999999999997665 6 356
Q ss_pred CCCcccCChHHHHHHHHH
Q 017179 320 MPVSEYITPEAFERYRAL 337 (376)
Q Consensus 320 ~~v~~~v~pe~~~~l~~~ 337 (376)
+++.+...+...+.++.+
T Consensus 236 t~l~~~~~~~~~e~~~~~ 253 (348)
T 3iix_A 236 TPLANEKKGDFTLTLKMV 253 (348)
T ss_dssp STTTTSCCCCHHHHHHHH
T ss_pred CCcccCCCCCHHHHHHHH
Confidence 777665433333333333
|
| >2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-23 Score=201.78 Aligned_cols=213 Identities=16% Similarity=0.269 Sum_probs=151.7
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcc--cHHHHHHHHHHHHhh
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQ--GSGHFAQTVRKLKEL 205 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~--g~~~~~elvr~Ik~~ 205 (376)
+..|+.++++|+.+|+||.++..+++. .++++++++.++.+.+.|+++|+|+|++-..+..+ +...+.++++.|++.
T Consensus 4 ~~~~v~is~GC~~~C~fC~~~~~~g~~r~r~~e~i~~ei~~l~~~G~~ei~l~g~~~~~yG~~~~~~~~l~~Ll~~l~~~ 83 (304)
T 2qgq_A 4 PYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLNSL 83 (304)
T ss_dssp SEEEEESBCCC-------------CCCCBCCHHHHHHHHHHHHHTTCCEEEEECTTGGGTTHHHHSSCCHHHHHHHHHTS
T ss_pred EEEEEEECCCCCCcCccCCccccCCCceeeCHHHHHHHHHHHHHCCCcEEEEEeEcccccCCCCCcHHHHHHHHHHHHhc
Confidence 677888999999999999999765443 58999999999999999999999998753222100 124588999999875
Q ss_pred CCCc-EEEEe--cCCCCCChHHHHHHHHcC--cccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEE
Q 017179 206 KPNM-LIEAL--VPDFRGNNGCVREVAKSG--LNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKT 279 (376)
Q Consensus 206 ~p~i-~Ie~l--~pd~~g~~e~l~~L~~aG--ld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt 279 (376)
+++ ++.+. .|+.. +++.++.|+++| ++.+..++|+. +++++.|+ |+++++++++.++.+++.+|+ +.+.+
T Consensus 84 -~gi~~ir~~~~~p~~l-~~e~l~~l~~~g~~~~~l~i~lqs~s~~vl~~m~-r~~t~e~~~~~i~~l~~~~~g-i~i~~ 159 (304)
T 2qgq_A 84 -NGEFWIRVMYLHPDHL-TEEIISAMLELDKVVKYFDVPVQHGSDKILKLMG-RTKSSEELKKMLSSIRERFPD-AVLRT 159 (304)
T ss_dssp -SSSCEEEECCCCGGGC-CHHHHHHHHHCTTBCCEEECCCBCSCHHHHHHTT-CCSCHHHHHHHHHHHHHHCTT-CEEEE
T ss_pred -CCCcEEEEeeeecccC-CHHHHHHHHhCCCCccEEEEecccCCHHHHHHhC-CCCCHHHHHHHHHHHHhhCCC-CEEEE
Confidence 444 56543 35433 789999999999 88899999974 69999999 899999999999999998664 99999
Q ss_pred eEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCCCCcccCC----hHHHHHHHHHHHHHhhhh
Q 017179 280 SIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYIT----PEAFERYRALGMEMGFRY 345 (376)
Q Consensus 280 ~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~~v~~~v~----pe~~~~l~~~a~~~gf~~ 345 (376)
++|+|| |||++|+.++++++++++++.+.+++|+ .|+.....+...++ .++++.+++++.++...+
T Consensus 160 ~~IvG~PgEt~ed~~~t~~~l~~l~~~~v~~~~~~p~pgT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~ 231 (304)
T 2qgq_A 160 SIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLKEKVDPEMAKRRQEELLLLQAEISNSR 231 (304)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECCC-----------CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeeCCCCChhHhCcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 9999999999999999999999999886 34222111222344 345666777776655443
|
| >1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=4.4e-22 Score=197.20 Aligned_cols=231 Identities=14% Similarity=0.216 Sum_probs=171.5
Q ss_pred HHHHHHHhhcChhhhhhhcCCCCcccccCCCCCCccEEEEeee-CCccCCCCcCCCCCCCC--C--CC-CCCchhHHHHH
Q 017179 93 VQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMIL-GDTCTRGCRFCNVKTSR--A--PP-PPDPDEPTNVA 166 (376)
Q Consensus 93 ~~~~~~l~~~~L~tvce~A~cpn~~ec~~~~~~~~~tat~m~i-~d~C~~~C~FC~v~~~r--~--~~-~l~~eEi~~~a 166 (376)
.++..+++ ..+..+++.|.-.+...+.++. -...+++.+ +++|+.+|.||.++... + .. .++++|+++.+
T Consensus 33 ~e~~~l~~-~~~~~L~~~A~~~~~~~~~~~~---v~~~~~i~i~t~~C~~~C~yC~~~~~~~~~~~~~~~~s~eei~~~~ 108 (369)
T 1r30_A 33 SQVTELFE-KPLLDLLFEAQQVHRQHFDPRQ---VQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESA 108 (369)
T ss_dssp TTTHHHHH-SCHHHHHHHHHHHHHHHSCTTC---CEEEEEEEEECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHH
T ss_pred HHHHHHHh-ccHHHHHHHHHHHHHHhcCCCE---EEEEEEEEEECCCCcccCccCCCCCcCCCCCcccccCCHHHHHHHH
Confidence 33444554 4667777776654443221221 112444554 99999999999988631 1 11 37999999999
Q ss_pred HHHHHCCCcEEEEEeeeC-CCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccchHH
Q 017179 167 EAIASWGLDYVVITSVDR-DDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEE 245 (376)
Q Consensus 167 ~al~~~G~~eIvLTsg~r-~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~~ 245 (376)
+.+.+.|++.|+|+|+.. +.. ...+++.++++.|++. ++.|. +++... +++.++.|+++|+|.+++++|+.++
T Consensus 109 ~~~~~~g~~~i~~~gg~~~p~~--~~~~~l~~ll~~ik~~--g~~i~-~t~G~l-~~e~l~~L~~aGvd~v~i~les~~e 182 (369)
T 1r30_A 109 RKAKAAGSTRFCMGAAWKNPHE--RDMPYLEQMVQGVKAM--GLEAC-MTLGTL-SESQAQRLANAGLDYYNHNLDTSPE 182 (369)
T ss_dssp HHHHHTTCSEEEEEECCSSCCT--TTHHHHHHHHHHHHHT--TSEEE-EECSSC-CHHHHHHHHHHCCCEEECCCBSCHH
T ss_pred HHHHHcCCcEEEEEeCCCCCCc--CCHHHHHHHHHHHHHc--CCeEE-EecCCC-CHHHHHHHHHCCCCEEeecCcCCHH
Confidence 999999999999998742 211 2267899999999986 35554 355443 7899999999999999999999779
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcC--CcEEEeecCCCCCCCCCCCc
Q 017179 246 LQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAG--VDVMTFGQYMRPSKRHMPVS 323 (376)
Q Consensus 246 l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~--vd~v~~~qY~~P~~~~~~v~ 323 (376)
+|+.++ ++++++++++.++.+++. |+.+++++|+|+|||.+|+.++++++++++ ++.+++..| .| ..++++.
T Consensus 183 ~~~~i~-~~~~~~~~l~~i~~a~~~---Gi~v~~~~I~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~l-~p-~~gT~l~ 256 (369)
T 1r30_A 183 FYGNII-TTRTYQERLDTLEKVRDA---GIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINML-VK-VKGTPLA 256 (369)
T ss_dssp HHHHHC-CSSCHHHHHHHHHHHHHH---HCEEECCEEECSSCCHHHHHHHHHHHHSSSSCCSEEEEEEC-CC-CTTSTTS
T ss_pred HHHHhC-CCCCHHHHHHHHHHHHHc---CCeeeeeeEeeCCCCHHHHHHHHHHHHhhcCCCCEEEeeee-ee-cCCCcCC
Confidence 999999 689999999999999995 789999999999999999999999999998 889998555 46 3466665
Q ss_pred cc--CChHHHHHHHHHHH
Q 017179 324 EY--ITPEAFERYRALGM 339 (376)
Q Consensus 324 ~~--v~pe~~~~l~~~a~ 339 (376)
+. ++++++..+..+++
T Consensus 257 ~~~~~~~~~~~~~~~~~r 274 (369)
T 1r30_A 257 DNDDVDAFDFIRTIAVAR 274 (369)
T ss_dssp SCCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 43 33444444444443
|
| >1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=5.4e-17 Score=165.43 Aligned_cols=218 Identities=15% Similarity=0.229 Sum_probs=158.1
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCC-CC---CCCchhHHHHHHHHHHC----CCcEEEEEeeeCCCCCcccHHHHHHHHH
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRA-PP---PPDPDEPTNVAEAIASW----GLDYVVITSVDRDDLADQGSGHFAQTVR 200 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~-~~---~l~~eEi~~~a~al~~~----G~~eIvLTsg~r~dl~d~g~~~~~elvr 200 (376)
...|+.+. .|+.+|.||.+..... .. ....+++.++++.+.+. ++..|.++||+...++ .+.+.++++
T Consensus 53 ~~lYihIp-fC~~~C~yC~~~~~~~~~~~~~~~~~~~l~~Ei~~~~~~~~~~~i~~i~fgGGtpt~l~---~~~l~~ll~ 128 (457)
T 1olt_A 53 LSLYVHIP-FCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLN---KAQISRLMK 128 (457)
T ss_dssp EEEEEEEC-EESSCCTTCCSSCEECSCTHHHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEESCGGGSC---HHHHHHHHH
T ss_pred eEEEEEcC-CCCCCCCCCCCceeccCCcchHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCCcccCC---HHHHHHHHH
Confidence 45566664 6999999999886321 11 12346666666665543 4678888887643233 567999999
Q ss_pred HHHhhCC-----CcEEEEecCCCCCChHHHHHHHHcCcccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCC
Q 017179 201 KLKELKP-----NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAG 274 (376)
Q Consensus 201 ~Ik~~~p-----~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~G 274 (376)
.|++.++ .+.++ .-|+.. +++.++.|+++|++.+.+++|+. +++++.|+ |+++++++++.++.+++ .|
T Consensus 129 ~i~~~~~~~~~~eitie-~~p~~l-~~e~l~~L~~~G~~rislGvQS~~~~~l~~i~-R~~~~~~~~~ai~~~r~---~G 202 (457)
T 1olt_A 129 LLRENFQFNADAEISIE-VDPREI-ELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVN-REQDEEFIFALLNHARE---IG 202 (457)
T ss_dssp HHHHHSCEEEEEEEEEE-ECSSSC-CTHHHHHHHHTTCCEEEEEEECCCHHHHHHHT-CCCCHHHHHHHHHHHHH---TT
T ss_pred HHHHhCCCCCCcEEEEE-EccCcC-CHHHHHHHHHcCCCEEEEeeccCCHHHHHHhC-CCCCHHHHHHHHHHHHH---cC
Confidence 9988653 23343 245543 78999999999999999999986 59999999 89999999999999999 47
Q ss_pred ce-EEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCCC-C-ccc--CChH----HHHHHHHHHHHHhh
Q 017179 275 TL-TKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMP-V-SEY--ITPE----AFERYRALGMEMGF 343 (376)
Q Consensus 275 i~-tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~~-v-~~~--v~pe----~~~~l~~~a~~~gf 343 (376)
+. +++++|+|+ |||.+++.++++.+.+++++.+.+.+|. .|...... . .+. +.++ .++...+...+.||
T Consensus 203 ~~~v~~dlI~GlPget~e~~~~tl~~~~~l~~~~i~~y~l~~~p~t~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy 282 (457)
T 1olt_A 203 FTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLTQSGY 282 (457)
T ss_dssp CCSCEEEEEESCTTCCHHHHHHHHHHHHHHCCSEEEEEECCCCTTTSGGGGGSCGGGSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCcEEEEEEcCCCCCCHHHHHHHHHHHHhcCcCEEEeecCcCCcCchhHhhccccCCCcCHHHHHHHHHHHHHHHHHCCC
Confidence 87 999999999 9999999999999999999999998886 44321111 1 111 1222 24444555667788
Q ss_pred hhhccchhHhhhh
Q 017179 344 RYVASGPMVRSSY 356 (376)
Q Consensus 344 ~~~~sgp~vrssy 356 (376)
.....+.++|..+
T Consensus 283 ~~yeis~fa~~~~ 295 (457)
T 1olt_A 283 QFIGMDHFARPDD 295 (457)
T ss_dssp EEEETTEEECTTS
T ss_pred eEEEechhcCCCc
Confidence 7776666776553
|
| >1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=7e-15 Score=143.37 Aligned_cols=172 Identities=17% Similarity=0.268 Sum_probs=134.4
Q ss_pred EeeeCCccCCCCcCCCCCC----CC----CCCCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHH
Q 017179 132 IMILGDTCTRGCRFCNVKT----SR----APPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLK 203 (376)
Q Consensus 132 ~m~i~d~C~~~C~FC~v~~----~r----~~~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik 203 (376)
.+.++++|+.+|.||.... .. ....++.+++.+.++.+.+.|++.|.||||+.--.++ +.++++.++
T Consensus 17 ~i~~T~~CNl~C~yC~~~~~~~~~~~~~~~~~~ls~e~i~~~i~~~~~~g~~~i~~tGGEPll~~~-----l~~li~~~~ 91 (340)
T 1tv8_A 17 RLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRD-----LDVLIAKLN 91 (340)
T ss_dssp EEECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHTTCCEEEEESSCGGGSTT-----HHHHHHHHT
T ss_pred EEEeCCCcCCcCCCCCcCcccCCCcccCCccCCCCHHHHHHHHHHHHHCCCCEEEEeCCCccchhh-----HHHHHHHHH
Confidence 4557999999999998765 11 1124899999999999999999999999987322222 678888887
Q ss_pred hhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccch-HHHHHhhcCCCC-CHHHHHHHHHHHHHhCCCCceEEEeE
Q 017179 204 ELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRA-NFKQSLDVLMMAKDYVPAGTLTKTSI 281 (376)
Q Consensus 204 ~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~r~~-t~e~~L~vl~~ak~~~p~Gi~tkt~i 281 (376)
+......+.+.+-... ..+.++.|+++|++.+.+++|+. ++.++.++ ++. ++++.++.|+.+++ .|+.++.++
T Consensus 92 ~~~~~~~i~i~TNG~l-l~~~~~~L~~~g~~~v~iSld~~~~~~~~~i~-~~~~~~~~v~~~i~~l~~---~g~~v~i~~ 166 (340)
T 1tv8_A 92 QIDGIEDIGLTTNGLL-LKKHGQKLYDAGLRRINVSLDAIDDTLFQSIN-NRNIKATTILEQIDYATS---IGLNVKVNV 166 (340)
T ss_dssp TCTTCCEEEEEECSTT-HHHHHHHHHHHTCCEEEEECCCSSHHHHHHHH-SSCCCHHHHHHHHHHHHH---TTCEEEEEE
T ss_pred hCCCCCeEEEEeCccc-hHHHHHHHHHCCCCEEEEecCCCCHHHHHHhh-CCCCCHHHHHHHHHHHHH---CCCCEEEEE
Confidence 7543225555553221 24678999999999999999986 58999999 566 99999999999999 478889998
Q ss_pred EEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCC
Q 017179 282 MLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRP 315 (376)
Q Consensus 282 mvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P 315 (376)
++.-|++++|+.++++++++++++ +.+.+|+ |
T Consensus 167 vv~~g~n~~ei~~~~~~~~~~g~~-~~~i~~~-p 198 (340)
T 1tv8_A 167 VIQKGINDDQIIPMLEYFKDKHIE-IRFIEFM-D 198 (340)
T ss_dssp EECTTTTGGGHHHHHHHHHHTTCC-EEEEECC-C
T ss_pred EEeCCCCHHHHHHHHHHHHhcCCe-EEEEEee-E
Confidence 886699999999999999999998 3443554 5
|
| >3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=5.1e-14 Score=128.99 Aligned_cols=204 Identities=11% Similarity=0.144 Sum_probs=144.3
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCC--CC-CCCCchhHHHHHHHHHHC---CCcEEEEEeeeCCCCCcccHHHHHHHHHHH
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSR--AP-PPPDPDEPTNVAEAIASW---GLDYVVITSVDRDDLADQGSGHFAQTVRKL 202 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r--~~-~~l~~eEi~~~a~al~~~---G~~eIvLTsg~r~dl~d~g~~~~~elvr~I 202 (376)
..++ +++++|+.+|.||..+... .. ..++++++.+.++.+.+. ++..|.|+||+.- + . .+.+.++++.+
T Consensus 20 ~~~~-i~t~~Cn~~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~GGEP~-l-~--~~~l~~l~~~~ 94 (245)
T 3c8f_A 20 IRFI-TFFQGCLMRCLYCHNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAI-L-Q--AEFVRDWFRAC 94 (245)
T ss_dssp EEEE-EEESCCSCCCTTCSCGGGCCTTCSEEECHHHHHHHHGGGHHHHTSTTCEEEEEESCGG-G-G--HHHHHHHHHHH
T ss_pred cEEE-EEeCCCCCCCCCCCCchhcccccCccCCHHHHHHHHHHhhhhhcCCCCeEEEECCCcC-C-C--HHHHHHHHHHH
Confidence 4444 4678999999999886432 11 237889999988877654 4789999998632 2 1 34467899999
Q ss_pred HhhCCCcEEEEecCCCCC-ChHHHHHHHHcCcccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017179 203 KELKPNMLIEALVPDFRG-NNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (376)
Q Consensus 203 k~~~p~i~Ie~l~pd~~g-~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~ 280 (376)
++. ++.+.+.+-.+.- +.+.++.|.+. ++.+..++++. ++.+++++ + .++++.++.++.+++. |+.+...
T Consensus 95 ~~~--~~~i~i~Tng~~~~~~~~~~~l~~~-~~~v~isld~~~~~~~~~~~-~-~~~~~~~~~i~~l~~~---g~~v~i~ 166 (245)
T 3c8f_A 95 KKE--GIHTCLDTNGFVRRYDPVIDELLEV-TDLVMLDLKQMNDEIHQNLV-G-VSNHRTLEFAKYLANK---NVKVWIR 166 (245)
T ss_dssp HTT--TCCEEEEECCCCCCCCHHHHHHHHT-CSEEEEECCCSSHHHHHHHH-S-SCSHHHHHHHHHHHHH---TCCEEEE
T ss_pred HHc--CCcEEEEeCCCcCcCHHHHHHHHHh-CCEEEEeCCCCCHHHhhhcc-C-CCHHHHHHHHHHHHhc---CCEEEEE
Confidence 875 4556555532221 46778888887 88899999985 69999998 3 4579999999999985 4554444
Q ss_pred --EEEecCCCHHHHHHHHHHHHHcCC-cEEEeecCCCCCC-------CCCCCc--ccCChHHHHHHHHHHHHHhhhh
Q 017179 281 --IMLGCGETPDQVVSTMEKVRAAGV-DVMTFGQYMRPSK-------RHMPVS--EYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 281 --imvGlGET~ee~~e~L~~Lrel~v-d~v~~~qY~~P~~-------~~~~v~--~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
++-|++++.+++.++++++++++. +.+.+.+|..... +..+.. ..+++++.+.+.+.+.+.||..
T Consensus 167 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v 243 (245)
T 3c8f_A 167 YVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGILEQYGHKV 243 (245)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHHCCEEEEEEEECCCCSHHHHHHTTCCCTTTTCCCCCHHHHHHHHHHHHTTTCCB
T ss_pred EeecCCCCCCHHHHHHHHHHHHhcCCCceeEEEeccccChhHHHhhCcccccccCCCCCHHHHHHHHHHHHhcCCee
Confidence 444556888999999999999995 7788877753221 111222 2345677888888888888754
|
| >2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.9e-13 Score=129.55 Aligned_cols=204 Identities=14% Similarity=0.098 Sum_probs=141.2
Q ss_pred CccCCCCcCCCCCCCC------CCCCCCchhHHHHHHHHHH------CC--------------CcEEEEE-eeeCCCCCc
Q 017179 137 DTCTRGCRFCNVKTSR------APPPPDPDEPTNVAEAIAS------WG--------------LDYVVIT-SVDRDDLAD 189 (376)
Q Consensus 137 d~C~~~C~FC~v~~~r------~~~~l~~eEi~~~a~al~~------~G--------------~~eIvLT-sg~r~dl~d 189 (376)
++|+.+|.||..+... ....++++|+++.+..... .| ++.|+|+ ||+.--.+
T Consensus 79 ~gCnl~C~fC~~~~~~~~~~~~~~~~~~~eei~~~i~~~~~~~~~~~~g~~~v~~~~~~e~~~~~~v~~sggGEPll~~- 157 (342)
T 2yx0_A 79 AWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNPTHAAISLSGEPMLYP- 157 (342)
T ss_dssp SCCSBCCTTCCCSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHHHHTSCCEEEECSSSCGGGST-
T ss_pred hhhhCcCcccCCCCCCCcccccccCcCCHHHHHHHHHHHHHHHhhccCCCcccchhhhhhccCCCEEEEcCCCcccchh-
Confidence 7999999999986431 1123788888876655432 12 5789998 66522112
Q ss_pred ccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcC--cccccccccch-HHHHHhhcCC--CCCHHHHHHHH
Q 017179 190 QGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSG--LNVFAHNIETV-EELQSAVRDH--RANFKQSLDVL 264 (376)
Q Consensus 190 ~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aG--ld~i~h~lEtv-~~l~~~vr~r--~~t~e~~L~vl 264 (376)
.+.++++.+++. ++.+.+.+-.. .++.++.|+++| ++.+.+++++. +++++.+++. +.++++.++.+
T Consensus 158 ----~l~~ll~~~~~~--g~~i~l~TNG~--~~e~l~~L~~~g~~~~~l~isld~~~~e~~~~i~~~~~~~~~~~~~~~i 229 (342)
T 2yx0_A 158 ----YMGDLVEEFHKR--GFTTFIVTNGT--IPERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWERILRFL 229 (342)
T ss_dssp ----THHHHHHHHHHT--TCEEEEEECSC--CHHHHHHHHHTTCCCSEEEEEECCSSHHHHHHHHCBSSSCHHHHHHHHH
T ss_pred ----hHHHHHHHHHHC--CCcEEEEcCCC--cHHHHHHHHhcCCCCCEEEEEccCCCHHHHHHHhCCCcccHHHHHHHHH
Confidence 377888888775 56777666444 277899999988 89999999986 5999999832 56799999999
Q ss_pred HHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCc--ccCChHHHHHHHHHHHHH-
Q 017179 265 MMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVS--EYITPEAFERYRALGMEM- 341 (376)
Q Consensus 265 ~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~--~~v~pe~~~~l~~~a~~~- 341 (376)
+.+++ .|+.+...+++.-|++++++.++++++++++++.+.+..|........++. ..++++++..+.+...+.
T Consensus 230 ~~l~~---~g~~v~i~~~l~~g~n~~~~~~l~~~l~~~~~~~i~l~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~l~~~l 306 (342)
T 2yx0_A 230 ELMRD---LPTRTVVRLTLVKGENMHSPEKYAKLILKARPMFVEAKAYMFVGYSRNRLTINNMPSHQDIREFAEALVKHL 306 (342)
T ss_dssp HHHTT---CSSEEEEEEEECTTTTCCCHHHHHHHHHHHCCSEEEEEECC------CCCCGGGSCCHHHHHHHHHHHHTTC
T ss_pred HHHHh---CCCCEEEEEEEECCccHHHHHHHHHHHHHcCCCEEEEEeeeecCCCcccccccCCCCHHHHHHHHHHHHHhc
Confidence 99988 467888888886699999999999999999999998877753211122322 234566666665555443
Q ss_pred -hhhhhccchhH
Q 017179 342 -GFRYVASGPMV 352 (376)
Q Consensus 342 -gf~~~~sgp~v 352 (376)
++.....+|..
T Consensus 307 ~~~~I~~~~~~~ 318 (342)
T 2yx0_A 307 PGYHIEDEYEPS 318 (342)
T ss_dssp TTEEEEEEEGGG
T ss_pred cCCceeeccccc
Confidence 34433334433
|
| >2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.7e-12 Score=123.33 Aligned_cols=203 Identities=12% Similarity=0.157 Sum_probs=123.6
Q ss_pred eeeC-CccCCCCcCCCCCCCC----------CCCCCCchhHHHHHHHHHH---------------------CCCcEEEEE
Q 017179 133 MILG-DTCTRGCRFCNVKTSR----------APPPPDPDEPTNVAEAIAS---------------------WGLDYVVIT 180 (376)
Q Consensus 133 m~i~-d~C~~~C~FC~v~~~r----------~~~~l~~eEi~~~a~al~~---------------------~G~~eIvLT 180 (376)
+.++ ++|+.+|.||..+... ....++++|+++.+....+ ..+++|+|+
T Consensus 55 i~~t~~~Cn~~C~fC~~~~~~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~~~~~~~g~~~v~~~~r~~~~~~~~~i~~s 134 (311)
T 2z2u_A 55 CTPSVIWCQQNCIFCWRVLPRDIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKFKEALEPKHVAIS 134 (311)
T ss_dssp EESCSSCCSCC----------------CCSCCCCCCCHHHHHHHHHHHHHHHHHGGGGGHHHHCHHHHHHHTSCCEEEEC
T ss_pred eccChhHHhCcCcccCCCCCCcccccccccCccccCCHHHHHHHHHHHHHHHhhccCCCcCcchhhhhhhccCCCEEEEe
Confidence 4457 7999999999866311 1234888998876544321 225789999
Q ss_pred -eeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccch-HHHHHhhcCCC--CC
Q 017179 181 -SVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHR--AN 256 (376)
Q Consensus 181 -sg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~r~--~t 256 (376)
||+.--.+ ++.++++.+++. ++.+.+.+-.. .++.++.| |++.+.+++++. ++++++++ +. .+
T Consensus 135 ~gGEPll~~-----~l~~li~~~~~~--g~~~~l~TNG~--~~~~l~~L---~~~~v~isld~~~~~~~~~i~-~~~~~~ 201 (311)
T 2z2u_A 135 LSGEPTLYP-----YLDELIKIFHKN--GFTTFVVSNGI--LTDVIEKI---EPTQLYISLDAYDLDSYRRIC-GGKKEY 201 (311)
T ss_dssp SSSCGGGST-----THHHHHHHHHHT--TCEEEEEECSC--CHHHHHHC---CCSEEEEECCCSSTTTC-----CCCHHH
T ss_pred CCcCccchh-----hHHHHHHHHHHC--CCcEEEECCCC--CHHHHHhC---CCCEEEEEeecCCHHHHHHHh-CCccch
Confidence 66532112 377888888775 56777666444 24555544 789999999986 58999998 44 67
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCC--CCCCCCcccCChHHHHHH
Q 017179 257 FKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPS--KRHMPVSEYITPEAFERY 334 (376)
Q Consensus 257 ~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~--~~~~~v~~~v~pe~~~~l 334 (376)
+++.++.++.+++. | .+...+++.-|+++ |+.+.++++++++++.+.+.+|++-+ ...+.....++++++..+
T Consensus 202 ~~~v~~~i~~l~~~---g-~v~i~~~~~~g~n~-~~~~~~~~~~~~~~~~i~l~~~~p~g~~~~~~~~~~~~~~~e~~~~ 276 (311)
T 2z2u_A 202 WESILNTLDILKEK---K-RTCIRTTLIRGYND-DILKFVELYERADVHFIELKSYMHVGYSQKRLKKEDMLQHDEILKL 276 (311)
T ss_dssp HHHHHHHHHHHTTS---S-SEEEEEEECTTTTC-CGGGTHHHHHHHTCSEEEEEECC------------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhc---C-CEEEEEEEECCcch-hHHHHHHHHHHcCCCEEEEEeeEEccccccccccccCCCHHHHHHH
Confidence 99999999999883 5 56666655557777 89999999999999999998786321 111222234566666665
Q ss_pred HHHHHH-HhhhhhccchhHh
Q 017179 335 RALGME-MGFRYVASGPMVR 353 (376)
Q Consensus 335 ~~~a~~-~gf~~~~sgp~vr 353 (376)
.+...+ .|+.+....|..|
T Consensus 277 ~~~l~~~~g~~~~~~~~~~~ 296 (311)
T 2z2u_A 277 AKMLDENSSYKLIDDSEDSR 296 (311)
T ss_dssp HHHHHTSSSEEEEEEEGGGT
T ss_pred HHHHHHhcCceEEeccCcce
Confidence 555444 6776654444433
|
| >2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale} | Back alignment and structure |
|---|
Probab=99.19 E-value=7.7e-10 Score=111.55 Aligned_cols=161 Identities=16% Similarity=0.219 Sum_probs=116.1
Q ss_pred EEeeeCCccCCCCcCCCCCCCCC-C-CCCCchhHHHHHHHHHH-CCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCC
Q 017179 131 TIMILGDTCTRGCRFCNVKTSRA-P-PPPDPDEPTNVAEAIAS-WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (376)
Q Consensus 131 t~m~i~d~C~~~C~FC~v~~~r~-~-~~l~~eEi~~~a~al~~-~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p 207 (376)
..+.++++|+.+|+||......+ . ..++.+++.+.++.+.+ .|+++|+||||+.--.++ ..+.++++.+++. +
T Consensus 117 v~l~vT~~Cnl~C~yC~~~~~~~~~~~~ls~eei~~~i~~i~~~~gi~~V~ltGGEPll~~d---~~L~~il~~l~~~-~ 192 (416)
T 2a5h_A 117 VLLLITDMCSMYCRHCTRRRFAGQSDDSMPMERIDKAIDYIRNTPQVRDVLLSGGDALLVSD---ETLEYIIAKLREI-P 192 (416)
T ss_dssp EEEEEESCCSSCCTTCTTTTTTTSSSSBCCHHHHHHHHHHHHTCTTCCEEEEEESCTTSSCH---HHHHHHHHHHHTS-T
T ss_pred EEEecCCCccccCcCCCCcccCCCccCCCCHHHHHHHHHHHHhcCCCcEEEEECCCCCCCCH---HHHHHHHHHHHhc-C
Confidence 34456899999999997765322 2 24899999999999988 799999999997433332 3477888888764 3
Q ss_pred Cc-EEEEec------CCCCCChHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017179 208 NM-LIEALV------PDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (376)
Q Consensus 208 ~i-~Ie~l~------pd~~g~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~ 280 (376)
++ .|.+.+ |... +++.++.|+++ +.+..++++... +.+ + ++.++.++.+++ .|+.+...
T Consensus 193 ~v~~i~i~Tng~~~~p~~i-t~e~l~~L~~~--~~v~Isl~~~~~--~ei-----~-~~v~~ai~~L~~---aGi~v~i~ 258 (416)
T 2a5h_A 193 HVEIVRIGSRTPVVLPQRI-TPELVNMLKKY--HPVWLNTHFNHP--NEI-----T-EESTRACQLLAD---AGVPLGNQ 258 (416)
T ss_dssp TCCEEEEECSHHHHCGGGC-CHHHHHHHGGG--CSEEEEECCCSG--GGC-----C-HHHHHHHHHHHH---TTCCEEEE
T ss_pred CccEEEEEecccccccccC-CHHHHHHHHhc--CcEEEEEecCCH--HHH-----h-HHHHHHHHHHHH---cCCEEEEE
Confidence 33 444433 2222 67889999887 666666665321 222 2 888999999998 46766555
Q ss_pred EEE--ecCCCHHHHHHHHHHHHHcCCcEEEe
Q 017179 281 IML--GCGETPDQVVSTMEKVRAAGVDVMTF 309 (376)
Q Consensus 281 imv--GlGET~ee~~e~L~~Lrel~vd~v~~ 309 (376)
.++ |+.++.+++.++++++.+++++...+
T Consensus 259 ~vll~GvNd~~e~l~~l~~~l~~lgv~~~~i 289 (416)
T 2a5h_A 259 SVLLRGVNDCVHVMKELVNKLVKIRVRPYYI 289 (416)
T ss_dssp EECCTTTTCSHHHHHHHHHHHHHTTEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHcCCceEEE
Confidence 554 88899999999999999999987655
|
| >3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.9e-09 Score=108.42 Aligned_cols=199 Identities=11% Similarity=0.111 Sum_probs=136.6
Q ss_pred eCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHHH----------CCCcEEEEEe-eeCCCCCcccHHHHHHHHHHHH
Q 017179 135 LGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIAS----------WGLDYVVITS-VDRDDLADQGSGHFAQTVRKLK 203 (376)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~----------~G~~eIvLTs-g~r~dl~d~g~~~~~elvr~Ik 203 (376)
.+.+|+.+|.||.-........++++||++.+..+.. .+++.|+|+| |+. -+. .+.+.++++.++
T Consensus 121 sq~GCnl~C~fC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~g~~gg~~i~~Ivf~GgGEP-Lln---~d~v~~~i~~lk 196 (404)
T 3rfa_A 121 SQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEP-LLN---LNNVVPAMEIML 196 (404)
T ss_dssp CEEECSSCCTTCGGGTTCEEEECCHHHHHHHHHHHHHHHCCHHHHSSCSCSEEEECSSSCG-GGC---HHHHHHHHHHHH
T ss_pred eCCCCCCcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHhhhcccccCCCccEEEEeCCCCc-ccC---HHHHHHHHHHHH
Confidence 3579999999998664321124899999988766543 2478999995 542 111 456788888888
Q ss_pred hhCCCc-----EEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcC--CCCCHHHHHHHHHHHHHhCCC--
Q 017179 204 ELKPNM-----LIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRD--HRANFKQSLDVLMMAKDYVPA-- 273 (376)
Q Consensus 204 ~~~p~i-----~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~--r~~t~e~~L~vl~~ak~~~p~-- 273 (376)
+.. ++ .|.+.+-.+ .+.++.|.+.+...++..+.+.+ ++++++.| ++++.++.++.++...+..+.
T Consensus 197 ~~~-Gl~~s~r~itlsTnG~---~p~i~~L~~~~d~~LaiSLka~d~e~~~~i~pv~~~~~le~vl~ai~~~~~~~g~~~ 272 (404)
T 3rfa_A 197 DDF-GFGLSKRRVTLSTSGV---VPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQ 272 (404)
T ss_dssp STT-TTCCCGGGEEEEESCC---HHHHHHHHHHCCCEEEEECCCSSHHHHHHHSGGGGTSCHHHHHHHHHHHHHHCTTTT
T ss_pred hhc-CcCcCCCceEEECCCc---HHHHHHHHHhhcceEEecccCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCCc
Confidence 642 34 566555333 35678888875445667788765 88888874 368899999999655432211
Q ss_pred -CceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhh
Q 017179 274 -GTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 274 -Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
.+.+.+-+|=|+.++++|+.+..++++++++ .|.+-+|. |. ....+ ...++++.+.++++..+.|+..
T Consensus 273 ~~V~ie~vLI~GvNDs~e~~~~La~ll~~l~~-~VnLIpyn-P~-~~~~~-~~ps~e~i~~f~~iL~~~Gi~v 341 (404)
T 3rfa_A 273 GRVTIEYVMLDHVNDGTEHAHQLAELLKDTPC-KINLIPWN-PF-PGAPY-GRSSNSRIDRFSKVLMSYGFTT 341 (404)
T ss_dssp TCEEEEEEEBTTTTCSHHHHHHHHHHTTTSCE-EEEEEECC-CC-TTCCC-CBCCHHHHHHHHHHHHHTTCEE
T ss_pred ccEEEEEEEecCCCCCHHHHHHHHHHHHcCCC-cEEEEecc-CC-CCCCC-CCCCHHHHHHHHHHHHHcCCcE
Confidence 2455666666889999999999999999875 45555553 42 12222 2356788999999999888755
|
| >3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=98.37 E-value=3.9e-06 Score=74.01 Aligned_cols=161 Identities=7% Similarity=0.074 Sum_probs=112.3
Q ss_pred cEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccch-HHHHHhhcCC
Q 017179 175 DYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDH 253 (376)
Q Consensus 175 ~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~r 253 (376)
..|+||||+.--. .+.+.++++.+++. ++.+.+.+--+. +++.++.|.+. +|.+...++.. ++.+.++++
T Consensus 5 ~~v~~tGGEPll~----~~~~~~l~~~~~~~--g~~~~l~TNG~l-~~~~~~~l~~~-~d~v~isld~~~~~~~~~~~g- 75 (182)
T 3can_A 5 GGVTFCGGEPLLH----PEFLIDILKRCGQQ--GIHRAVDTTLLA-RKETVDEVMRN-CELLLIDLKSMDSTVHQTFCD- 75 (182)
T ss_dssp CCEEECSSTGGGS----HHHHHHHHHHHHHT--TCCEEEECTTCC-CHHHHHHHHHT-CSEEEEECCCSCHHHHHHHHS-
T ss_pred CEEEEEcccccCC----HHHHHHHHHHHHHC--CCcEEEECCCCC-CHHHHHHHHhh-CCEEEEECCCCCHHHHHHHhC-
Confidence 5689999863211 22235888888874 467776665443 57888888887 88888889986 588999883
Q ss_pred CCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHc-CC-cEEEeecCCCCCCCC--------CCCc
Q 017179 254 RANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAA-GV-DVMTFGQYMRPSKRH--------MPVS 323 (376)
Q Consensus 254 ~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel-~v-d~v~~~qY~~P~~~~--------~~v~ 323 (376)
.+++..++.++.+++.... +.+.+.++-|+.++.+++.+.+++++++ ++ ..+.+.+|. |.... .++.
T Consensus 76 -~~~~~i~~~i~~l~~~g~~-v~i~~~v~~~~n~n~~~~~~~~~~~~~~~g~~~~~~l~~~~-p~g~~~~~~l~~~y~~~ 152 (182)
T 3can_A 76 -VPNELILKNIRRVAEADFP-YYIRIPLIEGVNADEKNIKLSAEFLASLPRHPEIINLLPYH-DIGKGKHAKLGSIYNPK 152 (182)
T ss_dssp -SCSHHHHHHHHHHHHTTCC-EEEEEEECBTTTCSHHHHHHHHHHHHHSSSCCSEEEEEECC-C----------------
T ss_pred -CCHHHHHHHHHHHHhCCCe-EEEEEEEECCCCCCHHHHHHHHHHHHhCcCccceEEEecCc-ccCHHHHHHhCCcCccc
Confidence 4579999999999884222 3455555666778999999999999999 98 888886665 42111 1122
Q ss_pred c--cCChHH--HHHHHHHHHHHhhhhhc
Q 017179 324 E--YITPEA--FERYRALGMEMGFRYVA 347 (376)
Q Consensus 324 ~--~v~pe~--~~~l~~~a~~~gf~~~~ 347 (376)
+ .+++++ .+.+.+++.+.|+.++.
T Consensus 153 ~~~~~~~e~~~l~~~~~~~~~~g~~~~i 180 (182)
T 3can_A 153 GYKMQTPSEEVQQQCIQILTDYGLKATI 180 (182)
T ss_dssp --CCBCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCceEe
Confidence 2 234566 88999999998887654
|
| >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=6.9e-05 Score=71.93 Aligned_cols=145 Identities=14% Similarity=0.203 Sum_probs=106.7
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCC-CCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD-LADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLN 234 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~d-l~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (376)
.++.+|.+++++++.+.|+++|-++++..+. .|- .....++++.+++ .|++.+.++.+ +.+.++...++|++
T Consensus 23 ~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~--~~d~~~~~~~~~~-~~~~~~~~l~~----~~~~i~~a~~ag~~ 95 (298)
T 2cw6_A 23 IVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQ--MGDHTEVLKGIQK-FPGINYPVLTP----NLKGFEAAVAAGAK 95 (298)
T ss_dssp CCCHHHHHHHHHHHHHTTCSEECCEECCCTTTCGG--GTTHHHHHHHSCC-CTTCBCCEECC----SHHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHHHHHHcCcCEEEECCCcCcccccc--cCCHHHHHHHHhh-CCCCEEEEEcC----CHHhHHHHHHCCCC
Confidence 4889999999999999999999998865432 231 1123456677765 46677666664 56789999999999
Q ss_pred cccccccchH-HHHHhhc-CCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC-C-----CHHHHHHHHHHHHHcCCcE
Q 017179 235 VFAHNIETVE-ELQSAVR-DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-E-----TPDQVVSTMEKVRAAGVDV 306 (376)
Q Consensus 235 ~i~h~lEtv~-~l~~~vr-~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlG-E-----T~ee~~e~L~~Lrel~vd~ 306 (376)
.+....-+++ .....++ ++...++...+.++.+++ .|+.+..+++.-+| | +.+++.+.++.+.+.|++.
T Consensus 96 ~v~i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~---~G~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~ 172 (298)
T 2cw6_A 96 EVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQS---ANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMGCYE 172 (298)
T ss_dssp EEEEEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHH---TTCEEEEEEETTTCBTTTBSCCHHHHHHHHHHHHHTTCSE
T ss_pred EEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH---CCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcCCCE
Confidence 9988776666 4445554 112234555666777887 57888888886653 2 6889999999999999999
Q ss_pred EEee
Q 017179 307 MTFG 310 (376)
Q Consensus 307 v~~~ 310 (376)
+.+.
T Consensus 173 i~l~ 176 (298)
T 2cw6_A 173 ISLG 176 (298)
T ss_dssp EEEE
T ss_pred EEec
Confidence 9885
|
| >4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=6e-05 Score=74.77 Aligned_cols=164 Identities=11% Similarity=0.100 Sum_probs=96.0
Q ss_pred EEeeeCCccCCCCcCCCCCCC--CCCC---CCCchhHHHHHHH-HHHCCCc-EEEEEeeeCCCCCc-ccHHHHHHHHHHH
Q 017179 131 TIMILGDTCTRGCRFCNVKTS--RAPP---PPDPDEPTNVAEA-IASWGLD-YVVITSVDRDDLAD-QGSGHFAQTVRKL 202 (376)
Q Consensus 131 t~m~i~d~C~~~C~FC~v~~~--r~~~---~l~~eEi~~~a~a-l~~~G~~-eIvLTsg~r~dl~d-~g~~~~~elvr~I 202 (376)
+.+....||..+|.||..... ..+. ..+.+|+++.++. +.+.+-+ .++-+|.+-|-++- .-....-++|+.+
T Consensus 109 Y~ln~y~GC~~~C~YCYl~~~~~~~~~I~v~vN~~eiL~~l~~~l~~~~~~~~~i~~g~~TDpyp~E~~~~ltr~~le~l 188 (368)
T 4fhd_A 109 YAIPLATGCMGHCHYCYLQTTLGSKPYIRVYVNLDDIFAQAQKYINERAPEITRFEAACTSDIVGIDHLTHSLKKAIEFI 188 (368)
T ss_dssp EECCSEEBCSCCCTTCTHHHHTTTCCSEEEECCHHHHHHHHHHHHHHHTTSCEEEESCSSBCHHHHHTTTCHHHHHHHHH
T ss_pred eeeCCccCCCCCCceEeccccCCCCCeEEEecCHHHHHHHHHHHHhhcCCCceEEEEEcCCCcchhhHHHhHHHHHHHHH
Confidence 345567899999999976632 1221 2678888887654 4443333 34445554443321 0011233455555
Q ss_pred HhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEE
Q 017179 203 KELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIM 282 (376)
Q Consensus 203 k~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~im 282 (376)
.+ +++..+++.+=.- +.+.|..+...|.-.+...+-+ +++.+.+-|+..+.+++|++++.+++ .|++|...+.
T Consensus 189 ~~-~~~~~v~i~TKs~--lid~L~~l~~~~~v~V~~Sitt-~~l~r~~EP~aps~~~RL~Ai~~l~~---aGipv~v~ia 261 (368)
T 4fhd_A 189 GA-TDYGRLRFVTKYE--HVDHLLDARHNGKTRFRFSINS-RYVINHFEPGTSSFDGRLAAARKVAG---AGYKLGFVVA 261 (368)
T ss_dssp HH-CSSEEEEEEESCC--CCGGGTTCCCTTCEEEEEEECC-HHHHHHHCTTSCCHHHHHHHHHHHHH---TTCEEEEEEE
T ss_pred Hh-CCCceEEEEeCCc--CHHHHHhcCcCCceEEEEEEcC-HHHHHHcCCCCCCHHHHHHHHHHHHH---CCCeEEEEEe
Confidence 44 4556677766422 1122333322232233334433 68888888888899999999999999 6876555544
Q ss_pred Eec-CCCH-HHHHHHHHHHHH
Q 017179 283 LGC-GETP-DQVVSTMEKVRA 301 (376)
Q Consensus 283 vGl-GET~-ee~~e~L~~Lre 301 (376)
==+ ++++ ++..+.++.|.+
T Consensus 262 PIiP~~~~~e~y~~lle~l~~ 282 (368)
T 4fhd_A 262 PIYRHEGWERGYFELFQELAR 282 (368)
T ss_dssp EECCCTTHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHH
Confidence 335 7877 466677775554
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00046 Score=66.30 Aligned_cols=142 Identities=20% Similarity=0.280 Sum_probs=104.3
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCC-CCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD-LADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLN 234 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~d-l~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (376)
.++.++.+++++++.+.|+++|-+.+...+. .+.. ....++++.+.+. +++.+.++.+ +.+.++...++|.+
T Consensus 26 ~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~~~~--~d~~~~~~~~~~~-~~~~~~~l~~----~~~~i~~a~~aG~~ 98 (302)
T 2ftp_A 26 PIEVADKIRLVDDLSAAGLDYIEVGSFVSPKWVPQM--AGSAEVFAGIRQR-PGVTYAALAP----NLKGFEAALESGVK 98 (302)
T ss_dssp CCCHHHHHHHHHHHHHTTCSEEEEEECSCTTTCGGG--TTHHHHHHHSCCC-TTSEEEEECC----SHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHcCcCEEEECCCcCccccccc--cCHHHHHHHhhhc-CCCEEEEEeC----CHHHHHHHHhCCcC
Confidence 4889999999999999999999998754332 3321 1244566777653 6788887775 56889999999999
Q ss_pred cccccccchH-HHHHhhcCCCCCHHHH----HHHHHHHHHhCCCCceEEEeEEEecC-C-----CHHHHHHHHHHHHHcC
Q 017179 235 VFAHNIETVE-ELQSAVRDHRANFKQS----LDVLMMAKDYVPAGTLTKTSIMLGCG-E-----TPDQVVSTMEKVRAAG 303 (376)
Q Consensus 235 ~i~h~lEtv~-~l~~~vr~r~~t~e~~----L~vl~~ak~~~p~Gi~tkt~imvGlG-E-----T~ee~~e~L~~Lrel~ 303 (376)
++....-+++ .....++ .++++. .++++.+++ .|+.+...++.-+| | +.+++.+.++.+.+.|
T Consensus 99 ~v~i~~~~s~~~~~~~~~---~s~ee~l~~~~~~v~~a~~---~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G 172 (302)
T 2ftp_A 99 EVAVFAAASEAFSQRNIN---CSIKDSLERFVPVLEAARQ---HQVRVRGYISCVLGCPYDGDVDPRQVAWVARELQQMG 172 (302)
T ss_dssp EEEEEEESCHHHHHHHHS---SCHHHHHHHHHHHHHHHHH---TTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHTT
T ss_pred EEEEEEecCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---CCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcC
Confidence 8877655555 4445554 345554 555677777 47888888776664 3 6788999999999999
Q ss_pred CcEEEee
Q 017179 304 VDVMTFG 310 (376)
Q Consensus 304 vd~v~~~ 310 (376)
+|.+.+.
T Consensus 173 ~d~i~l~ 179 (302)
T 2ftp_A 173 CYEVSLG 179 (302)
T ss_dssp CSEEEEE
T ss_pred CCEEEEe
Confidence 9999885
|
| >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00066 Score=65.60 Aligned_cols=142 Identities=18% Similarity=0.209 Sum_probs=106.1
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCC-CCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD-LADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLN 234 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~d-l~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (376)
.++.++.+++++++.+.|+++|-+.+...+. .+. .....++++.+++. +++.+.++.+ +.+.++...++|++
T Consensus 24 ~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~--~~d~~~~~~~~~~~-~~~~~~~l~~----~~~~i~~a~~~g~~ 96 (307)
T 1ydo_A 24 WIATEDKITWINQLSRTGLSYIEITSFVHPKWIPA--LRDAIDVAKGIDRE-KGVTYAALVP----NQRGLENALEGGIN 96 (307)
T ss_dssp CCCHHHHHHHHHHHHTTTCSEEEEEECSCTTTCGG--GTTHHHHHHHSCCC-TTCEEEEECC----SHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCcCcccccc--cCCHHHHHHHhhhc-CCCeEEEEeC----CHHhHHHHHhCCcC
Confidence 4889999999999999999999998865432 221 11123566666554 7888888886 46779999999999
Q ss_pred cccccccchH-HHHHhhcCCCCCHHHH----HHHHHHHHHhCCCCceEEEeEEEecC------CCHHHHHHHHHHHHHcC
Q 017179 235 VFAHNIETVE-ELQSAVRDHRANFKQS----LDVLMMAKDYVPAGTLTKTSIMLGCG------ETPDQVVSTMEKVRAAG 303 (376)
Q Consensus 235 ~i~h~lEtv~-~l~~~vr~r~~t~e~~----L~vl~~ak~~~p~Gi~tkt~imvGlG------ET~ee~~e~L~~Lrel~ 303 (376)
.+...+-+++ -....++ .+.++. .++++.+++ .|+.+..+++.-|| -+.+.+.+.++.+.+.|
T Consensus 97 ~v~i~~~~sd~~~~~~l~---~s~~e~l~~~~~~v~~ak~---~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G 170 (307)
T 1ydo_A 97 EACVFMSASETHNRKNIN---KSTSESLHILKQVNNDAQK---ANLTTRAYLSTVFGCPYEKDVPIEQVIRLSEALFEFG 170 (307)
T ss_dssp EEEEEEESSHHHHHTTTC---SCHHHHHHHHHHHHHHHHH---TTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred EEEEEeecCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---CCCEEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcC
Confidence 9888776666 3333443 455554 566777777 57888888888774 36789999999999999
Q ss_pred CcEEEee
Q 017179 304 VDVMTFG 310 (376)
Q Consensus 304 vd~v~~~ 310 (376)
++.|.+.
T Consensus 171 a~~i~l~ 177 (307)
T 1ydo_A 171 ISELSLG 177 (307)
T ss_dssp CSCEEEE
T ss_pred CCEEEEc
Confidence 9999885
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00044 Score=66.03 Aligned_cols=143 Identities=16% Similarity=0.161 Sum_probs=103.1
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCC-CcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDL-ADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLN 234 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl-~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (376)
.++.++.+++++++.+.|++.|.+++...+.+ |. .....+.++.+++. +++.+.++.+ +.+.++...++|.+
T Consensus 22 ~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~--~~~~~e~~~~i~~~-~~~~v~~l~~----n~~~i~~a~~~G~~ 94 (295)
T 1ydn_A 22 FVPTADKIALINRLSDCGYARIEATSFVSPKWVPQ--LADSREVMAGIRRA-DGVRYSVLVP----NMKGYEAAAAAHAD 94 (295)
T ss_dssp CCCHHHHHHHHHHHTTTTCSEEEEEECSCTTTCGG--GTTHHHHHHHSCCC-SSSEEEEECS----SHHHHHHHHHTTCS
T ss_pred CcCHHHHHHHHHHHHHcCcCEEEEccCcCcccccc--ccCHHHHHHHHHhC-CCCEEEEEeC----CHHHHHHHHHCCCC
Confidence 48899999999999999999999987543322 21 11245778888664 6788877775 56889999999999
Q ss_pred cccccccchHHHHHhhcCCCCCHHHH----HHHHHHHHHhCCCCceEEEeEEEec------CCCHHHHHHHHHHHHHcCC
Q 017179 235 VFAHNIETVEELQSAVRDHRANFKQS----LDVLMMAKDYVPAGTLTKTSIMLGC------GETPDQVVSTMEKVRAAGV 304 (376)
Q Consensus 235 ~i~h~lEtv~~l~~~vr~r~~t~e~~----L~vl~~ak~~~p~Gi~tkt~imvGl------GET~ee~~e~L~~Lrel~v 304 (376)
.+...+-+++...+. + -+.++++. .++++.|++ .|+.+...++.-+ --+.+++.+.++.+.+.|+
T Consensus 95 ~V~i~~~~S~~h~~~-~-~~~~~~e~~~~~~~~v~~a~~---~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~ 169 (295)
T 1ydn_A 95 EIAVFISASEGFSKA-N-INCTIAESIERLSPVIGAAIN---DGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGC 169 (295)
T ss_dssp EEEEEEESCHHHHHH-H-TSSCHHHHHHHHHHHHHHHHH---TTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHTC
T ss_pred EEEEEEecCHHHHHH-H-cCCCHHHHHHHHHHHHHHHHH---cCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCC
Confidence 987766566533222 1 12345544 455788888 5788876666433 2378899999999999999
Q ss_pred cEEEee
Q 017179 305 DVMTFG 310 (376)
Q Consensus 305 d~v~~~ 310 (376)
|.+.+.
T Consensus 170 d~i~l~ 175 (295)
T 1ydn_A 170 HEVSLG 175 (295)
T ss_dssp SEEEEE
T ss_pred CEEEec
Confidence 999886
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.003 Score=61.71 Aligned_cols=138 Identities=21% Similarity=0.211 Sum_probs=99.7
Q ss_pred CCCchhHHHHHH-HHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHh------hCCCcEEEEecCCCCCChHHHHHH
Q 017179 156 PPDPDEPTNVAE-AIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKE------LKPNMLIEALVPDFRGNNGCVREV 228 (376)
Q Consensus 156 ~l~~eEi~~~a~-al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~------~~p~i~Ie~l~pd~~g~~e~l~~L 228 (376)
.++.++.+++++ ++.+.|+++|-+.+.... ++ . .+.|+++++ ..|++.+.++.+.. +.++..
T Consensus 37 ~~~~~~k~~i~~~~L~~~Gv~~IE~g~~~~~--~~-~----~~~v~~~~~~~~~~~~~~~~~i~~l~~~~----~~i~~a 105 (337)
T 3ble_A 37 SFSTSEKLNIAKFLLQKLNVDRVEIASARVS--KG-E----LETVQKIMEWAATEQLTERIEILGFVDGN----KTVDWI 105 (337)
T ss_dssp CCCHHHHHHHHHHHHHTTCCSEEEEEETTSC--TT-H----HHHHHHHHHHHHHTTCGGGEEEEEESSTT----HHHHHH
T ss_pred CcCHHHHHHHHHHHHHHcCCCEEEEeCCCCC--hh-H----HHHHHHHHhhhhhhccCCCCeEEEEccch----hhHHHH
Confidence 488999999999 999999999998775421 11 1 234445544 34677888888743 368889
Q ss_pred HHcCcccccccccchH-HHHHhhcCCCCCHHHHH----HHHHHHHHhCCCCceEEEeEEE---ecCCCHHHHHHHHHHHH
Q 017179 229 AKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIML---GCGETPDQVVSTMEKVR 300 (376)
Q Consensus 229 ~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L----~vl~~ak~~~p~Gi~tkt~imv---GlGET~ee~~e~L~~Lr 300 (376)
.++|+|.+...+-+++ .....++ .+.++.+ ++++.+++ .|+.+..+++- +.--+.+.+.+.++.+.
T Consensus 106 ~~~g~~~v~i~~~~s~~~~~~~~~---~s~~e~l~~~~~~v~~ak~---~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (337)
T 3ble_A 106 KDSGAKVLNLLTKGSLHHLEKQLG---KTPKEFFTDVSFVIEYAIK---SGLKINVYLEDWSNGFRNSPDYVKSLVEHLS 179 (337)
T ss_dssp HHHTCCEEEEEEECSHHHHHHHTC---CCHHHHHHHHHHHHHHHHH---TTCEEEEEEETHHHHHHHCHHHHHHHHHHHH
T ss_pred HHCCCCEEEEEEecCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---CCCEEEEEEEECCCCCcCCHHHHHHHHHHHH
Confidence 9999999988777777 5555554 3555544 55666677 47777766654 33345788999999999
Q ss_pred HcCCcEEEee
Q 017179 301 AAGVDVMTFG 310 (376)
Q Consensus 301 el~vd~v~~~ 310 (376)
+.|++.|.+.
T Consensus 180 ~~Ga~~i~l~ 189 (337)
T 3ble_A 180 KEHIERIFLP 189 (337)
T ss_dssp TSCCSEEEEE
T ss_pred HcCCCEEEEe
Confidence 9999999885
|
| >3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.025 Score=54.14 Aligned_cols=142 Identities=11% Similarity=0.111 Sum_probs=96.4
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCC-ChHHHHHHHHcCcc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG-NNGCVREVAKSGLN 234 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g-~~e~l~~L~~aGld 234 (376)
.++.++-+++++.+.+.|+++|-+.+... . ... .+.++++.+..+++.+.++.+.... -+..++.++.+|.+
T Consensus 23 ~~~~~~K~~i~~~L~~~Gv~~IE~g~p~~---~---~~d-~e~v~~i~~~~~~~~i~~l~~~~~~di~~a~~~~~~ag~~ 95 (293)
T 3ewb_X 23 NFDVKEKIQIALQLEKLGIDVIEAGFPIS---S---PGD-FECVKAIAKAIKHCSVTGLARCVEGDIDRAEEALKDAVSP 95 (293)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEEECGGG---C---HHH-HHHHHHHHHHCCSSEEEEEEESSHHHHHHHHHHHTTCSSE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCC---C---ccH-HHHHHHHHHhcCCCEEEEEecCCHHHHHHHHHHHhhcCCC
Confidence 48999999999999999999998876321 1 112 2346777777788899888863210 12233444457988
Q ss_pred cccccccchH-HHHHhhcCCCCCHHHHHHHH----HHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEe
Q 017179 235 VFAHNIETVE-ELQSAVRDHRANFKQSLDVL----MMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (376)
Q Consensus 235 ~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl----~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~ 309 (376)
.+...+-+++ .....++ .+.++.++.+ +.+++ .|+.+.-++.-+.--+.+.+.+.++.+.+.|++.|.+
T Consensus 96 ~v~i~~~~Sd~~~~~nl~---~s~~e~l~~~~~~v~~a~~---~g~~v~~~~~d~~~~~~~~~~~~~~~~~~~G~~~i~l 169 (293)
T 3ewb_X 96 QIHIFLATSDVHMEYKLK---MSRAEVLASIKHHISYARQ---KFDVVQFSPEDATRSDRAFLIEAVQTAIDAGATVINI 169 (293)
T ss_dssp EEEEEEECSHHHHHHTTC---CCHHHHHHHHHHHHHHHHT---TCSCEEEEEETGGGSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEecCcHHHHHHHhC---CCHHHHHHHHHHHHHHHHh---CCCEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 8887776766 4444443 5667665554 55565 4666665555433456677889999999999999988
Q ss_pred e
Q 017179 310 G 310 (376)
Q Consensus 310 ~ 310 (376)
.
T Consensus 170 ~ 170 (293)
T 3ewb_X 170 P 170 (293)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.025 Score=54.93 Aligned_cols=142 Identities=15% Similarity=0.158 Sum_probs=96.6
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHH----HHHHc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVR----EVAKS 231 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~----~L~~a 231 (376)
.++.++-+++++.+.+.|+++|-+.+ +... ...+ +.+++|.+..+++.+.++.+- +.+.++ .+..+
T Consensus 24 ~~~~~~Kl~ia~~L~~~Gv~~IE~g~---p~~~---~~d~-e~v~~i~~~~~~~~i~~l~r~---~~~~i~~a~~al~~a 93 (325)
T 3eeg_A 24 QLNTEEKIIVAKALDELGVDVIEAGF---PVSS---PGDF-NSVVEITKAVTRPTICALTRA---KEADINIAGEALRFA 93 (325)
T ss_dssp -CCTTHHHHHHHHHHHHTCSEEEEEC---TTSC---HHHH-HHHHHHHHHCCSSEEEEECCS---CHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC---CCCC---HhHH-HHHHHHHHhCCCCEEEEeecC---CHHHHHHHHHhhccc
Confidence 48999999999999999999998864 2211 1223 456777777788888888742 334444 44445
Q ss_pred CcccccccccchH-HHHHhhc-CCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEe
Q 017179 232 GLNVFAHNIETVE-ELQSAVR-DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (376)
Q Consensus 232 Gld~i~h~lEtv~-~l~~~vr-~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~ 309 (376)
|.+.+...+-+++ .....++ ++....+...++++.+++ .|+.+.-+...+.--+.+.+.+.++.+.+.|++.|.+
T Consensus 94 g~~~v~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~a~~---~g~~v~f~~~d~~~~~~~~~~~~~~~~~~~G~~~i~l 170 (325)
T 3eeg_A 94 KRSRIHTGIGSSDIHIEHKLRSTRENILEMAVAAVKQAKK---VVHEVEFFCEDAGRADQAFLARMVEAVIEAGADVVNI 170 (325)
T ss_dssp SSEEEEEEEECSHHHHC----CCCTTGGGTTHHHHHHHHT---TSSEEEEEEETGGGSCHHHHHHHHHHHHHHTCSEEEC
T ss_pred CCCEEEEEecccHHHHHHHhCCCHHHHHHHHHHHHHHHHH---CCCEEEEEccccccchHHHHHHHHHHHHhcCCCEEEe
Confidence 9998887766666 3333343 234556677778888888 4676655555444456677789999999999999887
Q ss_pred e
Q 017179 310 G 310 (376)
Q Consensus 310 ~ 310 (376)
.
T Consensus 171 ~ 171 (325)
T 3eeg_A 171 P 171 (325)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=96.49 E-value=0.012 Score=57.56 Aligned_cols=137 Identities=12% Similarity=0.135 Sum_probs=90.4
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEE-----eeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEe-cCCCCCChHHHHHHH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVIT-----SVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL-VPDFRGNNGCVREVA 229 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLT-----sg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l-~pd~~g~~e~l~~L~ 229 (376)
.++.++.+++++++.+.|+++|=+. ++..++.. .....-.+.++++++..|++.+.++ .|.. ++.+.++...
T Consensus 26 ~~~~e~k~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g-~~~~~~~e~l~~i~~~~~~~~i~~l~~p~~-~~~~~i~~a~ 103 (345)
T 1nvm_A 26 QYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYG-FGRHTDLEYIEAVAGEISHAQIATLLLPGI-GSVHDLKNAY 103 (345)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTB-CCSSCHHHHHHHHHTTCSSSEEEEEECBTT-BCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccc-CCCCCHHHHHHHHHhhCCCCEEEEEecCCc-ccHHHHHHHH
Confidence 4899999999999999999999985 22211110 0011134678888777788888887 6643 3678899999
Q ss_pred HcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEe
Q 017179 230 KSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (376)
Q Consensus 230 ~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~ 309 (376)
++|+|.+....-.. ..+...+.++.+++. |+.+...++-...-+++.+.+.++.+.+.|++.|.+
T Consensus 104 ~aGvd~v~I~~~~s------------~~~~~~~~i~~ak~~---G~~v~~~~~~a~~~~~e~~~~ia~~~~~~Ga~~i~l 168 (345)
T 1nvm_A 104 QAGARVVRVATHCT------------EADVSKQHIEYARNL---GMDTVGFLMMSHMIPAEKLAEQGKLMESYGATCIYM 168 (345)
T ss_dssp HHTCCEEEEEEETT------------CGGGGHHHHHHHHHH---TCEEEEEEESTTSSCHHHHHHHHHHHHHHTCSEEEE
T ss_pred hCCcCEEEEEEecc------------HHHHHHHHHHHHHHC---CCEEEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 99999876542211 113344556666663 555555555455556667777777777777777666
|
| >3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.054 Score=54.55 Aligned_cols=142 Identities=18% Similarity=0.196 Sum_probs=96.4
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
.++.++-+++++.|.+.|+++|-+.+ +... ..-.+.++.|.+......+-.+. +.+.+.++...++|++.
T Consensus 57 ~~s~eeKl~Ia~~L~~~Gv~~IEvG~---P~as----p~d~~~~~~i~~~~~~~~v~~~~---r~~~~di~~A~~aG~~~ 126 (423)
T 3ivs_A 57 FFDTEKKIQIAKALDNFGVDYIELTS---PVAS----EQSRQDCEAICKLGLKCKILTHI---RCHMDDARVAVETGVDG 126 (423)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEECC---TTSC----HHHHHHHHHHHTSCCSSEEEEEE---ESCHHHHHHHHHTTCSE
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEee---cccC----HHHHHHHHHHHhcCCCCEEEEee---ccChhhHHHHHHcCCCE
Confidence 58999999999999999999998865 2111 12345566666543233332211 12567789999999999
Q ss_pred ccccccchHHHHH-hhc-CCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 236 FAHNIETVEELQS-AVR-DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 236 i~h~lEtv~~l~~-~vr-~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
+...+-+++-..+ .++ .+....+...++++.|++ .|+.+.-++.-++.-+.+.+++.++.+.+.|++.|.+.
T Consensus 127 V~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~ak~---~G~~V~~~~eda~r~d~~~~~~v~~~~~~~Ga~~i~l~ 200 (423)
T 3ivs_A 127 VDVVIGTSQYLRKYSHGKDMTYIIDSATEVINFVKS---KGIEVRFSSEDSFRSDLVDLLSLYKAVDKIGVNRVGIA 200 (423)
T ss_dssp EEEEEEC-------------CHHHHHHHHHHHHHHT---TTCEEEEEEESGGGSCHHHHHHHHHHHHHHCCSEEEEE
T ss_pred EEEEeeccHHHHHHHcCCCHHHHHHHHHHHHHHHHH---CCCEEEEEEccCcCCCHHHHHHHHHHHHHhCCCccccC
Confidence 8887777763222 222 112224566678888888 47888888887888889999999999999999998884
|
| >3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.059 Score=53.25 Aligned_cols=139 Identities=14% Similarity=0.122 Sum_probs=96.3
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHH----HHHHHc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCV----REVAKS 231 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l----~~L~~a 231 (376)
.++.++-+++++++.+.|+++|-+.+- ... ... .+.|+++.+..++..+.++.+- +.+.+ +.++.+
T Consensus 30 ~~~~~~Kl~ia~~L~~~Gv~~IE~g~p---~~~---~~d-~e~v~~i~~~~~~~~i~~l~r~---~~~di~~a~~al~~a 99 (370)
T 3rmj_A 30 AMTKEEKIRVARQLEKLGVDIIEAGFA---AAS---PGD-FEAVNAIAKTITKSTVCSLSRA---IERDIRQAGEAVAPA 99 (370)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEEEEG---GGC---HHH-HHHHHHHHTTCSSSEEEEEEES---SHHHHHHHHHHHTTS
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEeCC---CCC---HHH-HHHHHHHHHhCCCCeEEEEecC---CHHHHHHHHHHHhhC
Confidence 489999999999999999999987652 111 111 3456666666678888887742 33334 444559
Q ss_pred CcccccccccchH-HHHHhhcCCCCCHHHHHHHH----HHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcE
Q 017179 232 GLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVL----MMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDV 306 (376)
Q Consensus 232 Gld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl----~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~ 306 (376)
|.+.+...+-+++ .....++ .+.++.++.+ +.|++ .|..+.-+...+.--+.+.+.+.++.+.+.|++.
T Consensus 100 g~~~v~if~~~Sd~h~~~~l~---~s~~e~l~~~~~~v~~a~~---~g~~v~~~~ed~~r~~~~~~~~~~~~~~~~Ga~~ 173 (370)
T 3rmj_A 100 PKKRIHTFIATSPIHMEYKLK---MKPKQVIEAAVKAVKIARE---YTDDVEFSCEDALRSEIDFLAEICGAVIEAGATT 173 (370)
T ss_dssp SSEEEEEEEECSHHHHHHTTC---CCHHHHHHHHHHHHHHHTT---TCSCEEEEEETGGGSCHHHHHHHHHHHHHHTCCE
T ss_pred CCCEEEEEecCcHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---cCCEEEEecCCCCccCHHHHHHHHHHHHHcCCCE
Confidence 9999988777777 4444554 5677776664 55555 3555554454444556777889999999999999
Q ss_pred EEee
Q 017179 307 MTFG 310 (376)
Q Consensus 307 v~~~ 310 (376)
|.+.
T Consensus 174 i~l~ 177 (370)
T 3rmj_A 174 INIP 177 (370)
T ss_dssp EEEE
T ss_pred EEec
Confidence 9884
|
| >1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.072 Score=55.20 Aligned_cols=135 Identities=17% Similarity=0.179 Sum_probs=94.3
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeC-----CC-CCcccHHHHHHHHHHHHhhCCCcEEEEec--CCCCC-------
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDR-----DD-LADQGSGHFAQTVRKLKELKPNMLIEALV--PDFRG------- 220 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r-----~d-l~d~g~~~~~elvr~Ik~~~p~i~Ie~l~--pd~~g------- 220 (376)
.++.++.+++++.+.+.|+++|-+.++-. .- .++ =.+.++.|++..|++.+.++. +...|
T Consensus 43 ~~~tedKl~Ia~~L~~~Gv~~IE~G~patF~~~~rfl~~d-----~~e~lr~l~~~~~~~~l~~L~R~~N~~G~~~ypdd 117 (539)
T 1rqb_A 43 RMAMEDMVGACADIDAAGYWSVECWGGATYDSCIRFLNED-----PWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYNDE 117 (539)
T ss_dssp CCCGGGTGGGHHHHHHTTCSEEEEEETTHHHHHHHTSCCC-----HHHHHHHHHHHCTTSCEEEEECGGGTTSSSCCCHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCcccccccchhccCCC-----HHHHHHHHHHhCCCCEEEEEeccccccCcccCccc
Confidence 47899999999999999999999987521 00 111 135667777667888888877 22222
Q ss_pred -ChHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE--EEecCCCHHHHHHHHH
Q 017179 221 -NNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI--MLGCGETPDQVVSTME 297 (376)
Q Consensus 221 -~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~i--mvGlGET~ee~~e~L~ 297 (376)
....++...++|+|++....-+.+ .+...+.++.+++ .|..+...+ ..|..-+.+.+++.++
T Consensus 118 v~~~~ve~a~~aGvd~vrIf~s~sd------------~~ni~~~i~~ak~---~G~~v~~~i~~~~~~~~~~e~~~~~a~ 182 (539)
T 1rqb_A 118 VVDRFVDKSAENGMDVFRVFDAMND------------PRNMAHAMAAVKK---AGKHAQGTICYTISPVHTVEGYVKLAG 182 (539)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTCC------------THHHHHHHHHHHH---TTCEEEEEEECCCSTTCCHHHHHHHHH
T ss_pred ccHHHHHHHHhCCCCEEEEEEehhH------------HHHHHHHHHHHHH---CCCeEEEEEEeeeCCCCCHHHHHHHHH
Confidence 245678889999998876432222 2445677888888 466665455 4455668888889999
Q ss_pred HHHHcCCcEEEee
Q 017179 298 KVRAAGVDVMTFG 310 (376)
Q Consensus 298 ~Lrel~vd~v~~~ 310 (376)
.+.+.|++.|.|.
T Consensus 183 ~l~~~Gad~I~L~ 195 (539)
T 1rqb_A 183 QLLDMGADSIALK 195 (539)
T ss_dssp HHHHTTCSEEEEE
T ss_pred HHHHcCCCEEEeC
Confidence 9999999888774
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.1 Score=53.09 Aligned_cols=135 Identities=18% Similarity=0.173 Sum_probs=93.3
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCC-----C-CCcccHHHHHHHHHHHHhhCCCcEEEEec--CCCCC-------
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRD-----D-LADQGSGHFAQTVRKLKELKPNMLIEALV--PDFRG------- 220 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~-----d-l~d~g~~~~~elvr~Ik~~~p~i~Ie~l~--pd~~g------- 220 (376)
.++.++.+++++.+.+.|+++|-+.++-.- - -+| -.+.++.|++..|++.+.+++ +...|
T Consensus 26 ~~~~~dkl~Ia~~L~~~Gv~~IE~g~~atF~~~~r~~~~d-----~~e~l~~i~~~~~~~~l~~l~R~~N~~G~~~~~dd 100 (464)
T 2nx9_A 26 RLRIDDMLPIAQQLDQIGYWSLECWGGATFDSCIRFLGED-----PWQRLRLLKQAMPNTPLQMLLRGQNLLGYRHYADD 100 (464)
T ss_dssp CCCGGGTGGGHHHHHTSCCSEEEEEETTHHHHHHHTTCCC-----HHHHHHHHHHHCSSSCEEEEECGGGTTSSSCCCHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCcCccccchhhccCCC-----HHHHHHHHHHhCCCCeEEEEeccccccCcccccch
Confidence 478899999999999999999999875210 0 112 145677777767888888776 33322
Q ss_pred -ChHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE--EEecCCCHHHHHHHHH
Q 017179 221 -NNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI--MLGCGETPDQVVSTME 297 (376)
Q Consensus 221 -~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~i--mvGlGET~ee~~e~L~ 297 (376)
....++...++|+|++....-+.+ .+...+.++.+++ .|..+..++ ..|.--+.+.+++.++
T Consensus 101 v~~~~v~~a~~~Gvd~i~if~~~sd------------~~ni~~~i~~ak~---~G~~v~~~i~~~~~~~~~~e~~~~~a~ 165 (464)
T 2nx9_A 101 VVDTFVERAVKNGMDVFRVFDAMND------------VRNMQQALQAVKK---MGAHAQGTLCYTTSPVHNLQTWVDVAQ 165 (464)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTCC------------THHHHHHHHHHHH---TTCEEEEEEECCCCTTCCHHHHHHHHH
T ss_pred hhHHHHHHHHhCCcCEEEEEEecCH------------HHHHHHHHHHHHH---CCCEEEEEEEeeeCCCCCHHHHHHHHH
Confidence 144578888999998776422211 2345577788888 466665454 4455567888888999
Q ss_pred HHHHcCCcEEEee
Q 017179 298 KVRAAGVDVMTFG 310 (376)
Q Consensus 298 ~Lrel~vd~v~~~ 310 (376)
.+.+.|++.|.|.
T Consensus 166 ~l~~~Gad~I~l~ 178 (464)
T 2nx9_A 166 QLAELGVDSIALK 178 (464)
T ss_dssp HHHHTTCSEEEEE
T ss_pred HHHHCCCCEEEEc
Confidence 9999999888774
|
| >2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.13 Score=50.78 Aligned_cols=140 Identities=13% Similarity=0.187 Sum_probs=96.7
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
.++.++.+++++++.+.|+++|-+.+. .. .....+.++.|++..+...+..+. +++.+.++...++|++.
T Consensus 21 ~~~~~~k~~ia~~L~~~Gv~~IE~g~p---~~----~~~~~~~~~~i~~~~~~~~v~~~~---r~~~~di~~a~~~g~~~ 90 (382)
T 2ztj_A 21 NFSTQDKVEIAKALDEFGIEYIEVTTP---VA----SPQSRKDAEVLASLGLKAKVVTHI---QCRLDAAKVAVETGVQG 90 (382)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEECCT---TS----CHHHHHHHHHHHTSCCSSEEEEEE---ESCHHHHHHHHHTTCSE
T ss_pred CcCHHHHHHHHHHHHHcCcCEEEEcCC---cC----CHHHHHHHHHHHhcCCCcEEEEEc---ccChhhHHHHHHcCCCE
Confidence 588999999999999999999988652 11 122456777777765555554432 12466789999999999
Q ss_pred ccccccchHHHHHhhcCCCCCHHH----HHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 236 FAHNIETVEELQSAVRDHRANFKQ----SLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 236 i~h~lEtv~~l~~~vr~r~~t~e~----~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
+...+-+++-....+ +.+.++ ..+.++.+++..+. +.+.-++.-++.-+.+.+.+.++.+.+. ++.|.+.
T Consensus 91 v~i~~~~s~~~~~~~---~~s~~e~l~~~~~~v~~ak~~g~~-~~v~~~~ed~~~~~~~~~~~~~~~~~~~-a~~i~l~ 164 (382)
T 2ztj_A 91 IDLLFGTSKYLRAPH---GRDIPRIIEEAKEVIAYIREAAPH-VEVRFSAEDTFRSEEQDLLAVYEAVAPY-VDRVGLA 164 (382)
T ss_dssp EEEEECC-----------CCCHHHHHHHHHHHHHHHHHHCTT-SEEEEEETTTTTSCHHHHHHHHHHHGGG-CSEEEEE
T ss_pred EEEEeccCHHHHHHh---CCCHHHHHHHHHHHHHHHHHcCCC-EEEEEEEEeCCCCCHHHHHHHHHHHHHh-cCEEEec
Confidence 887766666222233 345544 56677788885211 7777777767777889999999999999 9998884
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=93.80 E-value=1.2 Score=41.20 Aligned_cols=114 Identities=18% Similarity=0.242 Sum_probs=83.5
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.++++....++++.+.|++-|-+|--. ++ -.+.|++|++.+|++.|.+=+ -+ +.+.++...++|.+.+
T Consensus 43 ~~~~~a~~~a~al~~gGi~~iEvt~~t----~~-----a~e~I~~l~~~~~~~~iGaGT-Vl--t~~~a~~Ai~AGA~fI 110 (232)
T 4e38_A 43 DNAEDIIPLGKVLAENGLPAAEITFRS----DA-----AVEAIRLLRQAQPEMLIGAGT-IL--NGEQALAAKEAGATFV 110 (232)
T ss_dssp SSGGGHHHHHHHHHHTTCCEEEEETTS----TT-----HHHHHHHHHHHCTTCEEEEEC-CC--SHHHHHHHHHHTCSEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCC----CC-----HHHHHHHHHHhCCCCEEeECC-cC--CHHHHHHHHHcCCCEE
Confidence 468999999999999999999987421 21 257888899888888776533 22 6889999999999976
Q ss_pred cccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecC
Q 017179 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQY 312 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY 312 (376)
- . +..+ .++++.+++. |+.+-.+++ |..|+...+ +.|.|+|.+|+.
T Consensus 111 v-------------s-P~~~----~~vi~~~~~~---gi~~ipGv~-----TptEi~~A~----~~Gad~vK~FPa 156 (232)
T 4e38_A 111 V-------------S-PGFN----PNTVRACQEI---GIDIVPGVN-----NPSTVEAAL----EMGLTTLKFFPA 156 (232)
T ss_dssp E-------------C-SSCC----HHHHHHHHHH---TCEEECEEC-----SHHHHHHHH----HTTCCEEEECST
T ss_pred E-------------e-CCCC----HHHHHHHHHc---CCCEEcCCC-----CHHHHHHHH----HcCCCEEEECcC
Confidence 2 2 2222 3566777774 566555543 899988774 689999999743
|
| >1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A | Back alignment and structure |
|---|
Probab=93.12 E-value=1.1 Score=42.64 Aligned_cols=140 Identities=12% Similarity=0.094 Sum_probs=90.8
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEe-eeCCCCC----cccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITS-VDRDDLA----DQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK 230 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTs-g~r~dl~----d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~ 230 (376)
..+++++++.|+++.+.|.+.|-|-+ ..|+.-. +...+.+..+|+.|++.. ++.|.+=+ + +.+.++.-.+
T Consensus 34 ~~~~~~a~~~a~~~v~~GAdiIDIGgestrPga~~v~~~eE~~rv~pvi~~l~~~~-~~piSIDT--~--~~~va~aAl~ 108 (282)
T 1aj0_A 34 HNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRF-EVWISVDT--S--KPEVIRESAK 108 (282)
T ss_dssp CTHHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHC-CCEEEEEC--C--CHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhhc-CCeEEEeC--C--CHHHHHHHHH
Confidence 36789999999999999999999876 3455421 123566788888887764 45554422 2 5788888888
Q ss_pred cCccccccc-ccchHHHHHh----------hcCC--CCC--------------HHHHHHHHHHHHHhCCCCce---EEEe
Q 017179 231 SGLNVFAHN-IETVEELQSA----------VRDH--RAN--------------FKQSLDVLMMAKDYVPAGTL---TKTS 280 (376)
Q Consensus 231 aGld~i~h~-lEtv~~l~~~----------vr~r--~~t--------------~e~~L~vl~~ak~~~p~Gi~---tkt~ 280 (376)
+|.+.+|.- -+..+++++- |+.+ ..+ .+...+.++.+.+ .|+. +--+
T Consensus 109 aGa~iINdvsg~~d~~~~~~~a~~~~~vVlmh~~G~p~tm~~~~~y~d~~~ev~~~l~~~i~~a~~---~Gi~~~~IilD 185 (282)
T 1aj0_A 109 VGAHIINDIRSLSEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQ---AGIAKEKLLLD 185 (282)
T ss_dssp TTCCEEEETTTTCSTTHHHHHHHHTCCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHH---TTCCGGGEEEE
T ss_pred cCCCEEEECCCCCCHHHHHHHHHhCCeEEEEccCCCCccccccCccchHHHHHHHHHHHHHHHHHH---cCCChhhEEEe
Confidence 899888752 1122233322 1111 011 4555566677776 4654 5556
Q ss_pred EEEecCCCHHHHHHHHHHHHHcC
Q 017179 281 IMLGCGETPDQVVSTMEKVRAAG 303 (376)
Q Consensus 281 imvGlGET~ee~~e~L~~Lrel~ 303 (376)
-.+|||.|.++-+++|+.++++.
T Consensus 186 Pg~gf~k~~~~n~~ll~~l~~~~ 208 (282)
T 1aj0_A 186 PGFGFGKNLSHNYSLLARLAEFH 208 (282)
T ss_dssp CCTTSSCCHHHHHHHHHTGGGGG
T ss_pred CCCCcccCHHHHHHHHHHHHHHh
Confidence 66688999998888888777653
|
| >3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=92.72 E-value=0.38 Score=46.52 Aligned_cols=137 Identities=9% Similarity=0.072 Sum_probs=80.7
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCC-CCcccHHHH--HHHHHHHHhhCCCcEEEEecCCCCCChHHHHHH---H
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD-LADQGSGHF--AQTVRKLKELKPNMLIEALVPDFRGNNGCVREV---A 229 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~d-l~d~g~~~~--~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L---~ 229 (376)
.++.++.+++++++.+.|+++|=+++...+. ..++ .-.| .+.++.|++ .|++.+.+|+|......+.+..+ .
T Consensus 20 ~~~~~~k~~ia~~L~~aGv~~IEvg~~~~p~~~f~~-~~~~~~~e~l~~i~~-~~~~~~~~L~r~~~~~~~dv~~~~~a~ 97 (320)
T 3dxi_A 20 DFNSKIVDAYILAMNELPIDYLEVGYRNKPSKEYMG-KFGYTPVSVLKHLRN-ISTKKIAIMLNEKNTTPEDLNHLLLPI 97 (320)
T ss_dssp CCCHHHHHHHHHHHHTTTCCEEEEEECCSCCSSCCC-HHHHCCHHHHHHHHH-HCCSEEEEEEEGGGCCGGGHHHHHGGG
T ss_pred cCCHHHHHHHHHHHHHhCCCEEEEecccCCcccccc-ccccChHHHHHHHhh-ccCCeEEEEecCCCCChhhHHHHHHhh
Confidence 4889999999999999999999998754221 1111 1112 356677766 48899999886532112234433 3
Q ss_pred HcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHH-HHHHHHHHHHHcCCcEEE
Q 017179 230 KSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPD-QVVSTMEKVRAAGVDVMT 308 (376)
Q Consensus 230 ~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~e-e~~e~L~~Lrel~vd~v~ 308 (376)
++|+|.+..... ..+.++..++++.+++ .|+.+..+++..-+-++. +++..+..+ +.|++.|.
T Consensus 98 ~~Gvd~~ri~~~------------~~nle~~~~~v~~ak~---~G~~v~~~~~~~~~~~~~~~~l~~~~~~-~~G~~~i~ 161 (320)
T 3dxi_A 98 IGLVDMIRIAID------------PQNIDRAIVLAKAIKT---MGFEVGFNVMYMSKWAEMNGFLSKLKAI-DKIADLFC 161 (320)
T ss_dssp TTTCSEEEEEEC------------GGGHHHHHHHHHHHHT---TTCEEEEEECCTTTGGGSTTSGGGGGGG-TTTCSEEE
T ss_pred hcCCCEEEEEec------------HHHHHHHHHHHHHHHH---CCCEEEEEEEeCCCCCCHHHHHHHHHHh-hCCCCEEE
Confidence 467776654311 1236677777777777 466665555542232222 344444332 34677766
Q ss_pred ee
Q 017179 309 FG 310 (376)
Q Consensus 309 ~~ 310 (376)
+.
T Consensus 162 l~ 163 (320)
T 3dxi_A 162 MV 163 (320)
T ss_dssp EE
T ss_pred EC
Confidence 63
|
| >1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1 | Back alignment and structure |
|---|
Probab=92.16 E-value=3.3 Score=39.14 Aligned_cols=138 Identities=13% Similarity=0.083 Sum_probs=84.8
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEee-eCCCCC----cccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSV-DRDDLA----DQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK 230 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg-~r~dl~----d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~ 230 (376)
..+++++++.|+++.+.|.+.|-|-|. .|+... +.-...+..+|+.|++. ++.|.+=+ + +.+.++.-.+
T Consensus 25 ~~~~~~a~~~a~~~v~~GAdiIDIGgestrpga~~v~~~eE~~Rv~pvi~~l~~~--~~piSIDT--~--~~~va~aAl~ 98 (280)
T 1eye_A 25 YLDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQ--GITVSIDT--M--RADVARAALQ 98 (280)
T ss_dssp CCSHHHHHHHHHHHHHTTCSEEEEECC--------------HHHHHHHHHHHHHT--TCCEEEEC--S--CHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCCCCHHHHHHHHHHHHHHhhcC--CCEEEEeC--C--CHHHHHHHHH
Confidence 468999999999999999999988663 244311 11256778888888764 45554322 2 5778888888
Q ss_pred cCccccccc-ccc-hHHHHHh----------hcCCC---------CC--------HHHHHHHHHHHHHhCCCCce---EE
Q 017179 231 SGLNVFAHN-IET-VEELQSA----------VRDHR---------AN--------FKQSLDVLMMAKDYVPAGTL---TK 278 (376)
Q Consensus 231 aGld~i~h~-lEt-v~~l~~~----------vr~r~---------~t--------~e~~L~vl~~ak~~~p~Gi~---tk 278 (376)
+|.+.+|.- -+. .+++++- |+.++ .. .+...+.++.+.+ .|+. +-
T Consensus 99 aGa~iINdvsg~~~d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~dv~~~v~~~l~~~i~~a~~---~Gi~~~~Ii 175 (280)
T 1eye_A 99 NGAQMVNDVSGGRADPAMGPLLAEADVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVA---AGVDPARLV 175 (280)
T ss_dssp TTCCEEEETTTTSSCTTHHHHHHHHTCCEEEECCCCSCTTCTTSCCCCSSHHHHHHHHHHHHHHHHHH---TTCCGGGEE
T ss_pred cCCCEEEECCCCCCCHHHHHHHHHhCCeEEEEcCCCCCcchhhcCcchhHHHHHHHHHHHHHHHHHHH---cCCChhhEE
Confidence 898888652 111 2233322 11110 11 3444456677776 4653 55
Q ss_pred EeEEEecCCCHHHHHHHHHHHHHc
Q 017179 279 TSIMLGCGETPDQVVSTMEKVRAA 302 (376)
Q Consensus 279 t~imvGlGET~ee~~e~L~~Lrel 302 (376)
-+--+|||.|.++=+++|+.++++
T Consensus 176 lDPg~Gf~k~~~~n~~ll~~l~~~ 199 (280)
T 1eye_A 176 LDPGLGFAKTAQHNWAILHALPEL 199 (280)
T ss_dssp EECCTTSSCCHHHHHHHHHTHHHH
T ss_pred EECCCCcccCHHHHHHHHHHHHHh
Confidence 555568999998888888777765
|
| >2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X* | Back alignment and structure |
|---|
Probab=91.55 E-value=4.1 Score=38.24 Aligned_cols=136 Identities=13% Similarity=0.122 Sum_probs=89.1
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHc--Ccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKS--GLN 234 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~a--Gld 234 (376)
.+.+++++.|++..+.|.+.|-|=++.. . +...+.+..+|+.|++.. ++.|.+=+. +.+.++.-.++ |.+
T Consensus 31 ~~~~~a~~~a~~~v~~GAdiIDIg~~s~-~--~eE~~rv~~vi~~l~~~~-~~pisIDT~----~~~v~~aal~a~~Ga~ 102 (271)
T 2yci_X 31 KDPRPIQEWARRQAEKGAHYLDVNTGPT-A--DDPVRVMEWLVKTIQEVV-DLPCCLDST----NPDAIEAGLKVHRGHA 102 (271)
T ss_dssp TCCHHHHHHHHHHHHTTCSEEEEECCSC-S--SCHHHHHHHHHHHHHHHC-CCCEEEECS----CHHHHHHHHHHCCSCC
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEcCCcC-c--hhHHHHHHHHHHHHHHhC-CCeEEEeCC----CHHHHHHHHHhCCCCC
Confidence 5789999999999999999998866542 1 123678889999998764 344544332 57888888888 999
Q ss_pred ccc-ccccch--HHHHHh----------hcC--C--CCCHHHHHH----HHHHHHHhCCCCce---EEEeEEEec-CCCH
Q 017179 235 VFA-HNIETV--EELQSA----------VRD--H--RANFKQSLD----VLMMAKDYVPAGTL---TKTSIMLGC-GETP 289 (376)
Q Consensus 235 ~i~-h~lEtv--~~l~~~----------vr~--r--~~t~e~~L~----vl~~ak~~~p~Gi~---tkt~imvGl-GET~ 289 (376)
.+| .+.+.. +++.+- |+. + ..+.++.++ .++.+.+ .|+. +--+-.+|+ |-+.
T Consensus 103 iINdvs~~~d~~~~~~~~~a~~~~~vv~m~~d~~G~p~t~~~~~~~l~~~~~~a~~---~Gi~~~~IilDPg~gfigk~~ 179 (271)
T 2yci_X 103 MINSTSADQWKMDIFFPMAKKYEAAIIGLTMNEKGVPKDANDRSQLAMELVANADA---HGIPMTELYIDPLILPVNVAQ 179 (271)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHTCEEEEESCBTTBCCCSHHHHHHHHHHHHHHHHH---TTCCGGGEEEECCCCCTTTST
T ss_pred EEEECCCCccccHHHHHHHHHcCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHH---CCCCcccEEEecCCCccccCH
Confidence 887 444322 344432 221 1 134444444 4455555 4664 667777788 8888
Q ss_pred HHHHHHHHHHHHcC
Q 017179 290 DQVVSTMEKVRAAG 303 (376)
Q Consensus 290 ee~~e~L~~Lrel~ 303 (376)
++-+++|+.++.+.
T Consensus 180 ~~~~~~l~~l~~~~ 193 (271)
T 2yci_X 180 EHAVEVLETIRQIK 193 (271)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 87777777766654
|
| >2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A | Back alignment and structure |
|---|
Probab=91.05 E-value=3.1 Score=39.51 Aligned_cols=80 Identities=16% Similarity=0.244 Sum_probs=56.9
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCC--ChHHHHHHHHcCc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG--NNGCVREVAKSGL 233 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g--~~e~l~~L~~aGl 233 (376)
+++++||.+.|.+..+.|..-|+|=.=|.+.-+....+.|.+++..|++..|++.|.+.++.-.. .++.+..+ +..+
T Consensus 30 PvTpeEia~~A~~a~~AGAaivHlHvRd~~G~ps~d~~~~~e~~~~IR~~~pd~ii~~TTg~~~~~~~eeR~~~~-~~~P 108 (282)
T 2y7e_A 30 PITPEEQAKEAKACFEAGARVIHLHIREDDGRPSQRLDRFQEAISAIREVVPEIIIQISTGGAVGESFDKRLAPL-ALKP 108 (282)
T ss_dssp CCSHHHHHHHHHHHHHHTEEEEEECEECTTSCEECCHHHHHHHHHHHHHHCTTSEEEECSSCSTTCCHHHHHGGG-GGCC
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCHHHHHHHh-hcCC
Confidence 68999999999999999998777754431111212377899999999998899999988753211 23444444 5567
Q ss_pred ccc
Q 017179 234 NVF 236 (376)
Q Consensus 234 d~i 236 (376)
|..
T Consensus 109 e~a 111 (282)
T 2y7e_A 109 EMA 111 (282)
T ss_dssp SEE
T ss_pred CEE
Confidence 766
|
| >3chv_A Prokaryotic domain of unknown function (DUF849) W barrel fold; TIM barrel fold, structural genomics, joint center for struc genomics; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A | Back alignment and structure |
|---|
Probab=90.79 E-value=1.6 Score=41.55 Aligned_cols=83 Identities=11% Similarity=0.077 Sum_probs=57.8
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCC-CChHHHHHHHHcCcc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFR-GNNGCVREVAKSGLN 234 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~-g~~e~l~~L~~aGld 234 (376)
+++++||.+.|.+..+.|..-|+|=.=+.+.-+....+.|.+++..|++..|++.|.+.++.-. ..++.+..+ ...+|
T Consensus 30 PvTpeEia~~A~~~~~AGAaivHlH~Rd~~G~ps~d~~~~~e~~~~IR~~~pd~ii~~TTgg~~~~~eeR~~~~-~~~Pe 108 (284)
T 3chv_A 30 PITVSEQVESTQEAFEAGAAIAHCHVRNDDGTPSSDPDRFARLTEGLHTHCPGMIVQFSTGGRSGAGQARGGML-PLKPD 108 (284)
T ss_dssp CCSHHHHHHHHHHHHHHTCCEEEECEECTTSCEECCHHHHHHHHHHHHHHSTTCEEEECCCTTTCCGGGGGTTG-GGCCS
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEeeecCCCCCcCCCHHHHHHHHHHHHHhCCCeEEEeCCCCCCCCHHHHHHhh-hcCCC
Confidence 6899999999999999999888775433221222237889999999999889999998774211 123344444 45667
Q ss_pred ccccc
Q 017179 235 VFAHN 239 (376)
Q Consensus 235 ~i~h~ 239 (376)
....+
T Consensus 109 ~aSl~ 113 (284)
T 3chv_A 109 MASLS 113 (284)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 65444
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=90.25 E-value=1.4 Score=41.47 Aligned_cols=146 Identities=10% Similarity=0.139 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhhCCCcEEEEecC-C--CCCChHHHHHHHHcCcccccccccc---------hH-HHHHhhcCCCCCHHHH
Q 017179 194 HFAQTVRKLKELKPNMLIEALVP-D--FRGNNGCVREVAKSGLNVFAHNIET---------VE-ELQSAVRDHRANFKQS 260 (376)
Q Consensus 194 ~~~elvr~Ik~~~p~i~Ie~l~p-d--~~g~~e~l~~L~~aGld~i~h~lEt---------v~-~l~~~vr~r~~t~e~~ 260 (376)
.+.+.++++++......|-.++. | +....+.++.|.++|+|.+..++.. +. .-.+.+. .+.+.++.
T Consensus 4 ri~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~-~G~~~~~~ 82 (267)
T 3vnd_A 4 RYQAKFAALKAQDKGAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLA-AGTTSSDC 82 (267)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHH-TTCCHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHH-cCCCHHHH
Confidence 35667777776654455554442 2 2224667888889999998777422 22 2223444 57889999
Q ss_pred HHHHHHHHHhCCCCceEEEeEEEecCC-CHH---HHHHHHHHHHHcCCcEEEeecCCCCC----------CCCCCCcccC
Q 017179 261 LDVLMMAKDYVPAGTLTKTSIMLGCGE-TPD---QVVSTMEKVRAAGVDVMTFGQYMRPS----------KRHMPVSEYI 326 (376)
Q Consensus 261 L~vl~~ak~~~p~Gi~tkt~imvGlGE-T~e---e~~e~L~~Lrel~vd~v~~~qY~~P~----------~~~~~v~~~v 326 (376)
+++++.+++..+. ++ ..+ ++. +.- -+.+.++.+.+.|+|.+.+ .-+.+. ..++.+--.+
T Consensus 83 ~~~v~~ir~~~~~-~P--ivl---m~Y~npv~~~g~e~f~~~~~~aGvdgvii-~Dlp~ee~~~~~~~~~~~gl~~i~li 155 (267)
T 3vnd_A 83 FDIITKVRAQHPD-MP--IGL---LLYANLVFANGIDEFYTKAQAAGVDSVLI-ADVPVEESAPFSKAAKAHGIAPIFIA 155 (267)
T ss_dssp HHHHHHHHHHCTT-CC--EEE---EECHHHHHHHCHHHHHHHHHHHTCCEEEE-TTSCGGGCHHHHHHHHHTTCEEECEE
T ss_pred HHHHHHHHhcCCC-CC--EEE---EecCcHHHHhhHHHHHHHHHHcCCCEEEe-CCCCHhhHHHHHHHHHHcCCeEEEEE
Confidence 9999999985323 32 222 232 211 1256677888889998777 333221 1222222223
Q ss_pred ChH-HHHHHHHHHHHH-hhhhhc
Q 017179 327 TPE-AFERYRALGMEM-GFRYVA 347 (376)
Q Consensus 327 ~pe-~~~~l~~~a~~~-gf~~~~ 347 (376)
.|. ..++++.++..- ||.|+.
T Consensus 156 aP~t~~eri~~i~~~~~gfvY~v 178 (267)
T 3vnd_A 156 PPNADADTLKMVSEQGEGYTYLL 178 (267)
T ss_dssp CTTCCHHHHHHHHHHCCSCEEES
T ss_pred CCCCCHHHHHHHHHhCCCcEEEE
Confidence 332 235666666553 788874
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=89.59 E-value=2.1 Score=38.18 Aligned_cols=76 Identities=14% Similarity=0.212 Sum_probs=52.7
Q ss_pred CchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccc
Q 017179 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFA 237 (376)
Q Consensus 158 ~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~ 237 (376)
..+++.+.++.+.+.|++.+.++..+... . +.....++++.|++.. ++.+-+ .....+.+.++.+.++|+|.+.
T Consensus 31 ~~~~~~~~a~~~~~~G~d~i~v~~~~~~~-~--~~~~~~~~i~~i~~~~-~ipvi~--~g~i~~~~~~~~~~~~Gad~V~ 104 (253)
T 1h5y_A 31 EVGDPVEMAVRYEEEGADEIAILDITAAP-E--GRATFIDSVKRVAEAV-SIPVLV--GGGVRSLEDATTLFRAGADKVS 104 (253)
T ss_dssp EEECHHHHHHHHHHTTCSCEEEEECCCCT-T--THHHHHHHHHHHHHHC-SSCEEE--ESSCCSHHHHHHHHHHTCSEEE
T ss_pred ecccHHHHHHHHHHcCCCEEEEEeCCccc-c--CCcccHHHHHHHHHhc-CCCEEE--ECCCCCHHHHHHHHHcCCCEEE
Confidence 45688999999999999999998544321 1 2334577888888765 343332 2222267788999999999887
Q ss_pred cc
Q 017179 238 HN 239 (376)
Q Consensus 238 h~ 239 (376)
.+
T Consensus 105 i~ 106 (253)
T 1h5y_A 105 VN 106 (253)
T ss_dssp ES
T ss_pred EC
Confidence 65
|
| >2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=89.18 E-value=1.6 Score=42.10 Aligned_cols=140 Identities=11% Similarity=0.080 Sum_probs=79.6
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEee-eCCC--CCc-ccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSV-DRDD--LAD-QGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKS 231 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg-~r~d--l~d-~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~a 231 (376)
..+++++++.|+++.+.|.+-|-|=|. .|+. ... .-.+.+..+|+.|++..|++.|.+=+ + +.+.++.-.++
T Consensus 61 ~~~~~~a~~~A~~~v~~GAdIIDIGgeSTrPG~~v~~~eEl~Rv~pvI~~l~~~~~~vpISIDT--~--~~~VaeaAl~a 136 (318)
T 2vp8_A 61 TFSDAAARDAVHRAVADGADVIDVGGVKAGPGERVDVDTEITRLVPFIEWLRGAYPDQLISVDT--W--RAQVAKAACAA 136 (318)
T ss_dssp ---CHHHHHHHHHHHHTTCSEEEEC----------CHHHHHHHHHHHHHHHHHHSTTCEEEEEC--S--CHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEeC--C--CHHHHHHHHHh
Confidence 368899999999999999999887543 2443 111 11345677788888877677775533 2 56777777778
Q ss_pred Ccccccc-cccchHHHHHh----------hcCCCC---------CH------------HHHHHHHHHHHHhCCCCce---
Q 017179 232 GLNVFAH-NIETVEELQSA----------VRDHRA---------NF------------KQSLDVLMMAKDYVPAGTL--- 276 (376)
Q Consensus 232 Gld~i~h-~lEtv~~l~~~----------vr~r~~---------t~------------e~~L~vl~~ak~~~p~Gi~--- 276 (376)
|.+.+|- +-+..+++++- |+.++. .| +...+.++.+.+ .|+.
T Consensus 137 Ga~iINDVsg~~d~~m~~vaa~~g~~vVlmh~~G~~p~tmq~~~~y~~~~~dv~~ev~~~l~~~i~~a~~---aGI~~~~ 213 (318)
T 2vp8_A 137 GADLINDTWGGVDPAMPEVAAEFGAGLVCAHTGGALPRTRPFRVSYGTTTRGVVDAVISQVTAAAERAVA---AGVAREK 213 (318)
T ss_dssp TCCEEEETTSSSSTTHHHHHHHHTCEEEEECC-------------CCSCHHHHHHHHHHHHHHHHHHHHH---TTCCGGG
T ss_pred CCCEEEECCCCCchHHHHHHHHhCCCEEEECCCCCCccccccccccccccccHHHHHHHHHHHHHHHHHH---cCCChhh
Confidence 8887753 11112233221 221111 12 233344566666 4653
Q ss_pred EEEeEEEecCCCHHHHHHHHHHHHHc
Q 017179 277 TKTSIMLGCGETPDQVVSTMEKVRAA 302 (376)
Q Consensus 277 tkt~imvGlGET~ee~~e~L~~Lrel 302 (376)
+--+--+|||.|.++-+++|+.++++
T Consensus 214 IilDPG~GF~Kt~~~nl~ll~~l~~l 239 (318)
T 2vp8_A 214 VLIDPAHDFGKNTFHGLLLLRHVADL 239 (318)
T ss_dssp EEEETTTTCCTTSHHHHHHHHTHHHH
T ss_pred EEEcCCCCcccCHHHHHHHHHHHHHH
Confidence 44454557888888777777766654
|
| >2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A* | Back alignment and structure |
|---|
Probab=89.18 E-value=5.1 Score=38.14 Aligned_cols=139 Identities=13% Similarity=0.096 Sum_probs=76.0
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEee-eCCCCC----cccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSV-DRDDLA----DQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK 230 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg-~r~dl~----d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~ 230 (376)
..+++++++.|+++.+.|.+.|-|=|. .|+... +.-.+.+..+|+.|++. ++.|.+=+ + +.+.++.-.+
T Consensus 48 ~~~~~~a~~~a~~~v~~GAdIIDIGgeSTrPga~~v~~~eE~~Rv~pvI~~l~~~--~vpiSIDT--~--~~~Va~aAl~ 121 (294)
T 2dqw_A 48 YLDPERALERAREMVAEGADILDLGAESTRPGAAPVPVEEEKRRLLPVLEAVLSL--GVPVSVDT--R--KPEVAEEALK 121 (294)
T ss_dssp -----CCHHHHHHHHHHTCSEEEEECC-----------CCHHHHHHHHHHHHHTT--CSCEEEEC--S--CHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhC--CCeEEEEC--C--CHHHHHHHHH
Confidence 368899999999999999999988552 344311 11256788888888764 45554322 2 5667777777
Q ss_pred cCcccccc-cccchHHHHHh----------hcCC---CCC--------------HHHHHHHHHHHHHhCCCCce-EEEeE
Q 017179 231 SGLNVFAH-NIETVEELQSA----------VRDH---RAN--------------FKQSLDVLMMAKDYVPAGTL-TKTSI 281 (376)
Q Consensus 231 aGld~i~h-~lEtv~~l~~~----------vr~r---~~t--------------~e~~L~vl~~ak~~~p~Gi~-tkt~i 281 (376)
+|.+.+|- +-+..+++++- |+.+ ..+ .+...+.++.+.+ .|+. +--+-
T Consensus 122 aGa~iINdVsg~~d~~m~~v~a~~~~~vVlmh~~eG~p~tm~~~~~y~dv~~ev~~~l~~~i~~a~~---~Gi~~IilDP 198 (294)
T 2dqw_A 122 LGAHLLNDVTGLRDERMVALAARHGVAAVVMHMPVPDPATMMAHARYRDVVAEVKAFLEAQARRALS---AGVPQVVLDP 198 (294)
T ss_dssp HTCSEEECSSCSCCHHHHHHHHHHTCEEEEECCSSSCTTTGGGGCCCSSHHHHHHHHHHHHHHHHHH---TTCSCEEEEC
T ss_pred hCCCEEEECCCCCChHHHHHHHHhCCCEEEEcCCCCCCccccccCccccHHHHHHHHHHHHHHHHHH---CCCCcEEEcC
Confidence 78777653 11122233322 2211 111 2233445566666 3553 22222
Q ss_pred EEecCCCHHHHHHHHHHHHHcC
Q 017179 282 MLGCGETPDQVVSTMEKVRAAG 303 (376)
Q Consensus 282 mvGlGET~ee~~e~L~~Lrel~ 303 (376)
-+|||.|.++-+++|+.++++.
T Consensus 199 G~Gf~kt~~~n~~ll~~l~~~~ 220 (294)
T 2dqw_A 199 GFGFGKLLEHNLALLRRLDEIV 220 (294)
T ss_dssp CTTSSCCHHHHHHHHHTHHHHH
T ss_pred CCCcccCHHHHHHHHHHHHHHh
Confidence 2378999988888887776653
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=89.00 E-value=12 Score=33.69 Aligned_cols=112 Identities=16% Similarity=0.183 Sum_probs=78.0
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.++++.++.++++.+.|++-|-|+- +. ++ -.+.++.+++.+|++.+..=+ -+ +.+.++...++|.|.+
T Consensus 25 ~~~~~~~~~~~al~~gGv~~iel~~--k~--~~-----~~~~i~~l~~~~~~~~vgagt-vi--~~d~~~~A~~aGAd~v 92 (214)
T 1wbh_A 25 KKLEHAVPMAKALVAGGVRVLNVTL--RT--EC-----AVDAIRAIAKEVPEAIVGAGT-VL--NPQQLAEVTEAGAQFA 92 (214)
T ss_dssp SSGGGHHHHHHHHHHTTCCEEEEES--CS--TT-----HHHHHHHHHHHCTTSEEEEES-CC--SHHHHHHHHHHTCSCE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeC--CC--hh-----HHHHHHHHHHHCcCCEEeeCE-EE--EHHHHHHHHHcCCCEE
Confidence 5788999999999999999998882 21 11 246888888888887776533 22 6788999999999976
Q ss_pred cccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
... ..+ .++++.+++. |+ .+|.| -.|.+|+.+. .+.|.|++.+|
T Consensus 93 ~~p--------------~~d----~~v~~~~~~~---g~----~~i~G-~~t~~e~~~A----~~~Gad~v~~F 136 (214)
T 1wbh_A 93 ISP--------------GLT----EPLLKAATEG---TI----PLIPG-ISTVSELMLG----MDYGLKEFKFF 136 (214)
T ss_dssp EES--------------SCC----HHHHHHHHHS---SS----CEEEE-ESSHHHHHHH----HHTTCCEEEET
T ss_pred EcC--------------CCC----HHHHHHHHHh---CC----CEEEe-cCCHHHHHHH----HHCCCCEEEEe
Confidence 321 111 3566666663 43 34456 3677777554 36899999885
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=87.95 E-value=13 Score=33.62 Aligned_cols=113 Identities=22% Similarity=0.280 Sum_probs=78.6
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.++++.++.++++.+.|++-|-|+- +. ++ -.+.++++++.+|++.+..=+ -+ +.+.++...++|+|.+
T Consensus 26 ~~~~~~~~~~~al~~gGv~~iel~~--k~--~~-----~~~~i~~l~~~~~~l~vgaGt-vl--~~d~~~~A~~aGAd~v 93 (224)
T 1vhc_A 26 DNADDILPLADTLAKNGLSVAEITF--RS--EA-----AADAIRLLRANRPDFLIAAGT-VL--TAEQVVLAKSSGADFV 93 (224)
T ss_dssp SSGGGHHHHHHHHHHTTCCEEEEET--TS--TT-----HHHHHHHHHHHCTTCEEEEES-CC--SHHHHHHHHHHTCSEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEec--cC--ch-----HHHHHHHHHHhCcCcEEeeCc-Ee--eHHHHHHHHHCCCCEE
Confidence 5788999999999999999888872 21 11 246888888888887776544 22 5688999999999977
Q ss_pred cccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeec
Q 017179 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 311 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~q 311 (376)
-. +..+ .++++.+++. |.. +|+| -.|.+|+.+. .+.|.|++.+|+
T Consensus 94 ~~--------------p~~d----~~v~~~ar~~---g~~----~i~G-v~t~~e~~~A----~~~Gad~vk~Fp 138 (224)
T 1vhc_A 94 VT--------------PGLN----PKIVKLCQDL---NFP----ITPG-VNNPMAIEIA----LEMGISAVKFFP 138 (224)
T ss_dssp EC--------------SSCC----HHHHHHHHHT---TCC----EECE-ECSHHHHHHH----HHTTCCEEEETT
T ss_pred EE--------------CCCC----HHHHHHHHHh---CCC----EEec-cCCHHHHHHH----HHCCCCEEEEee
Confidence 22 1211 4566777773 332 3445 3578887553 468999998853
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=87.92 E-value=3.2 Score=39.05 Aligned_cols=110 Identities=9% Similarity=0.195 Sum_probs=65.3
Q ss_pred HHHHHHHHHhhCCCcEEEEec---CCCCCChHHHHHHHHcCcccccccccc---------hH-HHHHhhcCCCCCHHHHH
Q 017179 195 FAQTVRKLKELKPNMLIEALV---PDFRGNNGCVREVAKSGLNVFAHNIET---------VE-ELQSAVRDHRANFKQSL 261 (376)
Q Consensus 195 ~~elvr~Ik~~~p~i~Ie~l~---pd~~g~~e~l~~L~~aGld~i~h~lEt---------v~-~l~~~vr~r~~t~e~~L 261 (376)
+.++++++++......|-.++ |++....+.++.|.++|+|.+..++.. .. .-.+.+. .+.+.++.+
T Consensus 7 i~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~-~G~~~~~~~ 85 (271)
T 3nav_A 7 YQALFQRLSAAQQGAFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALA-AKTTPDICF 85 (271)
T ss_dssp HHHHHHHHHHTTBCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHH-TTCCHHHHH
T ss_pred HHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHH-cCCCHHHHH
Confidence 556677777655445555554 333224566788888899988777432 22 2233455 578899999
Q ss_pred HHHHHHHHhCCCCceEEEeEEEecCCCHH--HHHHHHHHHHHcCCcEEEe
Q 017179 262 DVLMMAKDYVPAGTLTKTSIMLGCGETPD--QVVSTMEKVRAAGVDVMTF 309 (376)
Q Consensus 262 ~vl~~ak~~~p~Gi~tkt~imvGlGET~e--e~~e~L~~Lrel~vd~v~~ 309 (376)
+.++.+++.++. +++ -+| |.-.... -+.+.++.+.+.|+|.+.+
T Consensus 86 ~~v~~~r~~~~~-~Pi--vlm-~Y~n~v~~~g~~~f~~~~~~aGvdGvIi 131 (271)
T 3nav_A 86 ELIAQIRARNPE-TPI--GLL-MYANLVYARGIDDFYQRCQKAGVDSVLI 131 (271)
T ss_dssp HHHHHHHHHCTT-SCE--EEE-ECHHHHHHTCHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHhcCCC-CCE--EEE-ecCcHHHHHhHHHHHHHHHHCCCCEEEE
Confidence 999999885333 222 122 2111111 1255677778888887766
|
| >3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=87.79 E-value=4.7 Score=38.04 Aligned_cols=81 Identities=15% Similarity=0.199 Sum_probs=55.3
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCC-hHHHHHHHHcCcc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGN-NGCVREVAKSGLN 234 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~-~e~l~~L~~aGld 234 (376)
+++++|+.+.|.+..+.|..-|+|=-=|.+.-+....+.|.+++..|++..|++.|.+.++.-.+. ++. ..+.+..+|
T Consensus 26 PvTpeEia~~A~~~~~AGAaivHlHvRd~~G~~s~d~~~~~e~~~~IR~~~pd~ii~~Ttg~~~~~~e~R-~~~~~~~Pe 104 (275)
T 3no5_A 26 PITVSEQVESTQAAFEAGATLVHLHVRNDDETPTSNPDRFALVLEGIRKHAPGMITQVSTGGRSGAGNER-GAMLSLRPD 104 (275)
T ss_dssp CCSHHHHHHHHHHHHHHTCCEEEECEECTTSCEECCHHHHHHHHHHHHHHSTTCEEEECCCCCTTCCGGG-GTTGGGCCS
T ss_pred CCCHHHHHHHHHHHHHccCcEEEEeecCCCCCcCCCHHHHHHHHHHHHHhCCCeEEEeCCCCCCCCHHHH-hhHhhcCCC
Confidence 699999999999999999987777543322222123678999999999999999998877531111 222 333444566
Q ss_pred ccc
Q 017179 235 VFA 237 (376)
Q Consensus 235 ~i~ 237 (376)
...
T Consensus 105 ~aS 107 (275)
T 3no5_A 105 MAS 107 (275)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=87.68 E-value=16 Score=33.12 Aligned_cols=112 Identities=19% Similarity=0.278 Sum_probs=76.9
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.++++.++.++++.+.|++-|-|+- +. + .-.+.++.+++.+|++.+..=+. + +.+.++...++|.|.+
T Consensus 35 ~~~~~~~~~~~al~~gGv~~iel~~--k~--~-----~~~~~i~~l~~~~~~~~igagtv-l--~~d~~~~A~~aGAd~v 102 (225)
T 1mxs_A 35 AREEDILPLADALAAGGIRTLEVTL--RS--Q-----HGLKAIQVLREQRPELCVGAGTV-L--DRSMFAAVEAAGAQFV 102 (225)
T ss_dssp SCGGGHHHHHHHHHHTTCCEEEEES--SS--T-----HHHHHHHHHHHHCTTSEEEEECC-C--SHHHHHHHHHHTCSSE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEec--CC--c-----cHHHHHHHHHHhCcccEEeeCeE-e--eHHHHHHHHHCCCCEE
Confidence 4688999999999999999888872 21 1 13467888888888888766443 3 6788999999999976
Q ss_pred cccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
... ..+ .++++.+++. |+ .+|.| -.|.+|+.+.+ +.|.|++.+|
T Consensus 103 ~~p--------------~~d----~~v~~~~~~~---g~----~~i~G-~~t~~e~~~A~----~~Gad~vk~F 146 (225)
T 1mxs_A 103 VTP--------------GIT----EDILEAGVDS---EI----PLLPG-ISTPSEIMMGY----ALGYRRFKLF 146 (225)
T ss_dssp ECS--------------SCC----HHHHHHHHHC---SS----CEECE-ECSHHHHHHHH----TTTCCEEEET
T ss_pred EeC--------------CCC----HHHHHHHHHh---CC----CEEEe-eCCHHHHHHHH----HCCCCEEEEc
Confidence 321 111 3556666662 33 34445 36777765543 6788888885
|
| >3lot_A Uncharacterized protein; protein of unknown function, structural genomics, joint CENT structural genomics, JCSG; HET: MSE; 1.89A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=87.26 E-value=2.1 Score=41.23 Aligned_cols=139 Identities=18% Similarity=0.176 Sum_probs=83.4
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeC-CCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCC--C--CChHHHHHHHH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDR-DDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF--R--GNNGCVREVAK 230 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r-~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~--~--g~~e~l~~L~~ 230 (376)
+++++||.+.|.+..+.|..-++|=.=+. +..+....+.|.+++..|++. +++.|.+.++.- . ..++.+..+.+
T Consensus 28 PvTpeEia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~y~e~i~~IR~~-~d~iI~~TTgg~~~~~~~~eeR~~~~~~ 106 (314)
T 3lot_A 28 PVTPDQIVEEAVKAAEAGAGMVHIHARDPKDGRPTTDVEVFRYICREIKKQ-SDVVINVTTGGGGTLGIPVEERAKVVPA 106 (314)
T ss_dssp CCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHHHHHHHHHHH-CCCEEEECSSTTGGGTCCHHHHTTHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCcCCCHHHHHHHHHHHHhc-CCeEEEeCCCCcCCCCCCHHHHHHHHHh
Confidence 69999999999999999998777754432 122222377899999999987 688888877521 1 13445555556
Q ss_pred cCcccccccccchH-H---HHHhhcCC-----------------CCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCH
Q 017179 231 SGLNVFAHNIETVE-E---LQSAVRDH-----------------RANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETP 289 (376)
Q Consensus 231 aGld~i~h~lEtv~-~---l~~~vr~r-----------------~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ 289 (376)
..+|....|.=+.+ - ...++... ..+++..-+.++.+++. | |+.-+.+ -+.
T Consensus 107 ~~Pe~aSln~Gs~Nf~~~~~~~~~~~~~~~~e~~~~~~~~~~v~~N~~~~i~~~~~~~~e~---G--i~pE~e~---fd~ 178 (314)
T 3lot_A 107 LKPEIATFNMGSMNFAIHPLLKKYKEFKYDWEPEYLEMTRDIVFRNTFKDLEALSRIFKEN---D--TKPELEC---YDI 178 (314)
T ss_dssp HCCSEEEEECCCEECBCTTHHHHCCCCSSTHHHHHHHHGGGCEECCCHHHHHHHHHHHHHH---T--CEEEEEE---CSH
T ss_pred cCCceeeecCCCcccccccccccccccccccchhhcccCCCceecCCHHHHHHHHHHHHHc---C--CEEEEEE---ECH
Confidence 56776655432221 0 00111101 13567777777777773 5 4555544 244
Q ss_pred HHHHHHHHHHHHcCC
Q 017179 290 DQVVSTMEKVRAAGV 304 (376)
Q Consensus 290 ee~~e~L~~Lrel~v 304 (376)
.++.. +..|.+-|+
T Consensus 179 g~l~~-~~~l~~~Gl 192 (314)
T 3lot_A 179 GQIYN-TAFMFHEGY 192 (314)
T ss_dssp HHHHH-HHHHHHTTC
T ss_pred HHHHH-HHHHHHCCC
Confidence 44444 444555554
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=87.18 E-value=3.2 Score=38.51 Aligned_cols=153 Identities=13% Similarity=0.141 Sum_probs=89.9
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCc--ccHHHHHHHHHHHHhhCCCcEEE--EecCCCCCChHHHHHHHHcC
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD--QGSGHFAQTVRKLKELKPNMLIE--ALVPDFRGNNGCVREVAKSG 232 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d--~g~~~~~elvr~Ik~~~p~i~Ie--~l~pd~~g~~e~l~~L~~aG 232 (376)
.|...+.+.++.+.+.|++.+++==.|..-.|. .| .++|++|++..|+..+. +.+-+ ..+.++.+.++|
T Consensus 37 aD~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpnit~G----~~~v~~lr~~~p~~~ldvHLmv~~---p~~~i~~~~~aG 109 (246)
T 3inp_A 37 ADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFG----PMVLKALRDYGITAGMDVHLMVKP---VDALIESFAKAG 109 (246)
T ss_dssp SCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCC----HHHHHHHHHHTCCSCEEEEEECSS---CHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEecCCCcCcchhcC----HHHHHHHHHhCCCCeEEEEEeeCC---HHHHHHHHHHcC
Confidence 688888999999999999988886665432222 23 36788888877554443 33322 245788999999
Q ss_pred cccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecC
Q 017179 233 LNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQY 312 (376)
Q Consensus 233 ld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY 312 (376)
+|.+....|+.+. ..++++.+++ .|+ +.++.+--+ |+.+.++-+ .+ .+|+|.+. -
T Consensus 110 Ad~itvH~Ea~~~--------------~~~~i~~ir~---~G~--k~Gvalnp~-Tp~e~l~~~---l~-~vD~VlvM-s 164 (246)
T 3inp_A 110 ATSIVFHPEASEH--------------IDRSLQLIKS---FGI--QAGLALNPA-TGIDCLKYV---ES-NIDRVLIM-S 164 (246)
T ss_dssp CSEEEECGGGCSC--------------HHHHHHHHHT---TTS--EEEEEECTT-CCSGGGTTT---GG-GCSEEEEE-C
T ss_pred CCEEEEccccchh--------------HHHHHHHHHH---cCC--eEEEEecCC-CCHHHHHHH---Hh-cCCEEEEe-e
Confidence 9999888775431 1345556666 354 566654433 333333222 11 36777653 1
Q ss_pred CCCCCCCCCCcccCChHHHHHHHHHHHHHh
Q 017179 313 MRPSKRHMPVSEYITPEAFERYRALGMEMG 342 (376)
Q Consensus 313 ~~P~~~~~~v~~~v~pe~~~~l~~~a~~~g 342 (376)
..|+..+-+... ...++.++|+++..+.|
T Consensus 165 V~PGfgGQ~fi~-~~l~KI~~lr~~~~~~~ 193 (246)
T 3inp_A 165 VNPGFGGQKFIP-AMLDKAKEISKWISSTD 193 (246)
T ss_dssp SCTTC--CCCCT-THHHHHHHHHHHHHHHT
T ss_pred ecCCCCCcccch-HHHHHHHHHHHHHHhcC
Confidence 246543332211 12356677777665555
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=86.48 E-value=1.4 Score=39.69 Aligned_cols=75 Identities=7% Similarity=0.060 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
.++.+.++.+.+.|++.+.+..-+....+ ...+ +.+++|++.. ++.+.+ .....+++.++.+.++|+|.+..+
T Consensus 31 ~d~~~~a~~~~~~Gad~i~v~~~d~~~~~---~~~~-~~i~~i~~~~-~ipv~v--~ggi~~~~~~~~~l~~Gad~V~lg 103 (244)
T 2y88_A 31 GSAVDAALGWQRDGAEWIHLVDLDAAFGR---GSNH-ELLAEVVGKL-DVQVEL--SGGIRDDESLAAALATGCARVNVG 103 (244)
T ss_dssp EEHHHHHHHHHHTTCSEEEEEEHHHHTTS---CCCH-HHHHHHHHHC-SSEEEE--ESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCcccccC---CChH-HHHHHHHHhc-CCcEEE--ECCCCCHHHHHHHHHcCCCEEEEC
Confidence 37888899999999999998753321111 1124 8888888765 344432 222236788999999999988776
Q ss_pred cc
Q 017179 240 IE 241 (376)
Q Consensus 240 lE 241 (376)
.+
T Consensus 104 ~~ 105 (244)
T 2y88_A 104 TA 105 (244)
T ss_dssp HH
T ss_pred ch
Confidence 44
|
| >3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A* | Back alignment and structure |
|---|
Probab=86.38 E-value=4.2 Score=38.86 Aligned_cols=99 Identities=16% Similarity=0.134 Sum_probs=58.8
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEE-ecCCCC---CCh-HHHHHH---
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA-LVPDFR---GNN-GCVREV--- 228 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~-l~pd~~---g~~-e~l~~L--- 228 (376)
.+.+++...+..+.+.|++.|+...||.+...+++..+-.++|+.|++.. +..|.+ ..|+.. .+. ..++.|
T Consensus 94 ~~~~~l~~~L~~~~~~GI~nILaLrGDpp~~~~~~~~~A~dLv~~ir~~~-~f~IgvA~yPE~Hp~a~~~~~d~~~Lk~K 172 (304)
T 3fst_A 94 ATPDELRTIARDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEVA-DFDISVAAYPEVHPEAKSAQADLLNLKRK 172 (304)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEEECCCCC------CCCHHHHHHHHHHHC-CCEEEEEECTTCCTTCSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCCCCCCCHHHHHHHHHHcC-CCeEEEEeCCCcCCCCCCHHHHHHHHHHH
Confidence 45788999999999999999999998865333334455677888887753 455554 344321 121 223333
Q ss_pred HHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 017179 229 AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKD 269 (376)
Q Consensus 229 ~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~ 269 (376)
.++|+|.+ |.-.-++.+.+++.++.+++
T Consensus 173 vdAGAdf~-------------iTQ~ffD~~~~~~f~~~~r~ 200 (304)
T 3fst_A 173 VDAGANRA-------------ITQFFFDVESYLRFRDRCVS 200 (304)
T ss_dssp HHHTCCEE-------------EECCCSCHHHHHHHHHHHHH
T ss_pred HHcCCCEE-------------EeCccCCHHHHHHHHHHHHh
Confidence 36777753 12123556666666666666
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=86.00 E-value=6.8 Score=35.16 Aligned_cols=132 Identities=17% Similarity=0.212 Sum_probs=76.4
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCC-CcEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NMLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p-~i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
.|.....+.++.+.+.|++.+.|---|....+.. ..-.+.+++|++..+ .+.+.+.+-| ..+.++.+.++|+|.
T Consensus 16 ~d~~~l~~~i~~~~~~Gad~i~l~i~Dg~fv~~~--~~~~~~~~~lr~~~~~~~~v~lmv~d---~~~~i~~~~~agad~ 90 (228)
T 1h1y_A 16 SDFANLAAEADRMVRLGADWLHMDIMDGHFVPNL--TIGAPVIQSLRKHTKAYLDCHLMVTN---PSDYVEPLAKAGASG 90 (228)
T ss_dssp SCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCB--CBCHHHHHHHHTTCCSEEEEEEESSC---GGGGHHHHHHHTCSE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEEecCCcCcch--hhCHHHHHHHHhhcCCcEEEEEEecC---HHHHHHHHHHcCCCE
Confidence 5777888889999999999887764443322211 011367888887653 2445556533 234588888999999
Q ss_pred ccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHc--CCcEEEeecCC
Q 017179 236 FAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAA--GVDVMTFGQYM 313 (376)
Q Consensus 236 i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel--~vd~v~~~qY~ 313 (376)
+....|..+.. +.++++.+++ .|+. .++.+. -.|+.+. ++.+.+. ++|++.+....
T Consensus 91 v~vH~~~~~~~-------------~~~~~~~i~~---~g~~--igv~~~-p~t~~e~---~~~~~~~~~~~d~vl~~sv~ 148 (228)
T 1h1y_A 91 FTFHIEVSRDN-------------WQELIQSIKA---KGMR--PGVSLR-PGTPVEE---VFPLVEAENPVELVLVMTVE 148 (228)
T ss_dssp EEEEGGGCTTT-------------HHHHHHHHHH---TTCE--EEEEEC-TTSCGGG---GHHHHHSSSCCSEEEEESSC
T ss_pred EEECCCCcccH-------------HHHHHHHHHH---cCCC--EEEEEe-CCCCHHH---HHHHHhcCCCCCEEEEEeec
Confidence 86655532211 0244555555 3543 233332 2344333 3344555 78988886443
Q ss_pred CCC
Q 017179 314 RPS 316 (376)
Q Consensus 314 ~P~ 316 (376)
|+
T Consensus 149 -pg 150 (228)
T 1h1y_A 149 -PG 150 (228)
T ss_dssp -TT
T ss_pred -CC
Confidence 54
|
| >3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A* | Back alignment and structure |
|---|
Probab=85.88 E-value=1.7 Score=41.56 Aligned_cols=100 Identities=15% Similarity=0.126 Sum_probs=60.2
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCC-C---c--ccHHHHHHHHHHHHhhCCC-cEEEE-ecCCC---CCCh-HH
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDL-A---D--QGSGHFAQTVRKLKELKPN-MLIEA-LVPDF---RGNN-GC 224 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl-~---d--~g~~~~~elvr~Ik~~~p~-i~Ie~-l~pd~---~g~~-e~ 224 (376)
.+.+++...+..+.+.|++.|+...||.+.. . + +|+.+-.++|+.|++.+++ ..|.+ ..|+- ..+. ..
T Consensus 83 ~~~~~l~~~L~~~~~~GI~niLaLrGD~p~~~g~~~~~~~~f~~a~~Lv~~ir~~~g~~f~igvA~yPE~Hp~~~~~~~d 162 (310)
T 3apt_A 83 QSRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRPHPEGFRYAAELVALIRERYGDRVSVGGAAYPEGHPESESLEAD 162 (310)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEEECCCCSTTCCSCCCCTTSCSSHHHHHHHHHHHHGGGSEEEEEECTTCCTTSSCHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEEEeCCCcCCCCCCHHHH
Confidence 5688999999999999999999999985422 1 1 2355667888888876443 56654 44531 1121 12
Q ss_pred HH---HHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 017179 225 VR---EVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKD 269 (376)
Q Consensus 225 l~---~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~ 269 (376)
++ .=.++|+|.+ |.-.-++.+.+++.++.+++
T Consensus 163 ~~~Lk~Kv~aGAdf~-------------iTQ~ffD~~~~~~f~~~~r~ 197 (310)
T 3apt_A 163 LRHFKAKVEAGLDFA-------------ITQLFFNNAHYFGFLERARR 197 (310)
T ss_dssp HHHHHHHHHHHCSEE-------------EECCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEE-------------EecccCCHHHHHHHHHHHHH
Confidence 33 3336777643 11123455666666666665
|
| >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A | Back alignment and structure |
|---|
Probab=84.96 E-value=12 Score=39.93 Aligned_cols=136 Identities=17% Similarity=0.120 Sum_probs=89.9
Q ss_pred CCCchhHHHHHHHHHHCC--CcEEEEEeeeCCC-----CCcccHHHHHHHHHHHHhhCCCcEEEEecCC--CCC------
Q 017179 156 PPDPDEPTNVAEAIASWG--LDYVVITSVDRDD-----LADQGSGHFAQTVRKLKELKPNMLIEALVPD--FRG------ 220 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G--~~eIvLTsg~r~d-----l~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd--~~g------ 220 (376)
.++.++.+++++++.+.| +..|-+.||..-| +.+. =.+.|+.+++..|++.+..+.-. ..|
T Consensus 121 r~~~edkl~Ia~~Ld~~Gvg~~~IE~gGGatfd~~~~f~~e~----p~e~l~~l~~~~~~~~l~~l~R~~n~vgy~~~p~ 196 (718)
T 3bg3_A 121 RVRTHDLKKIAPYVAHNFSKLFSMENWGGATFDVAMRFLYEC----PWRRLQELRELIPNIPFQMLLRGANAVGYTNYPD 196 (718)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCSEEEEEETTHHHHHHHTSCCC----HHHHHHHHHHHCSSSCEEEEECGGGTTSSSCCCH
T ss_pred CCCHHHHHHHHHHHHHhcCCCcEEEecCCcchhhccccCCCC----HHHHHHHHHHHcccchHHHHhcccccccccccCC
Confidence 378999999999999985 6668887664211 1111 13467777777788877765521 111
Q ss_pred --ChHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEe---c-C----CCHH
Q 017179 221 --NNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG---C-G----ETPD 290 (376)
Q Consensus 221 --~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvG---l-G----ET~e 290 (376)
..+.++...++|+|++....-. ...+.....++.+++ .|..+...+.+. . + -+.+
T Consensus 197 ~~~~~~i~~a~~~Gvd~irIf~s~------------n~l~~l~~~i~~ak~---~G~~v~~~i~~~~d~~dp~r~~~~~e 261 (718)
T 3bg3_A 197 NVVFKFCEVAKENGMDVFRVFDSL------------NYLPNMLLGMEAAGS---AGGVVEAAISYTGDVADPSRTKYSLQ 261 (718)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECSS------------CCHHHHHHHHHHHHT---TTSEEEEEEECCSCTTCTTCCTTCHH
T ss_pred cchHHHHHHHHhcCcCEEEEEecH------------HHHHHHHHHHHHHHH---cCCeEEEEEEeeccccCCCCCCCCHH
Confidence 2456788899999987664321 124455566777777 466666666555 1 1 1678
Q ss_pred HHHHHHHHHHHcCCcEEEee
Q 017179 291 QVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 291 e~~e~L~~Lrel~vd~v~~~ 310 (376)
.+++.++.+.+.|++.|.|.
T Consensus 262 ~~~~~a~~l~~~Ga~~I~l~ 281 (718)
T 3bg3_A 262 YYMGLAEELVRAGTHILCIK 281 (718)
T ss_dssp HHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEc
Confidence 88888888999999888874
|
| >3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=84.66 E-value=17 Score=34.94 Aligned_cols=138 Identities=14% Similarity=0.130 Sum_probs=81.6
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEee-eCCCCC--------cccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHH
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSV-DRDDLA--------DQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVRE 227 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg-~r~dl~--------d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~ 227 (376)
.+++++++.|+++.+.|.+.|-|=|. .||.-. +...+.+..+|+.|++.. ++.|.+=+ + +.+.++.
T Consensus 46 ~~~~~al~~A~~~v~~GAdIIDIGgeSTrPga~~~~~~V~~~eE~~Rv~pvI~~l~~~~-~vpISIDT--~--~~~Va~a 120 (314)
T 3tr9_A 46 LDLNSALRTAEKMVDEGADILDIGGEATNPFVDIKTDSPSTQIELDRLLPVIDAIKKRF-PQLISVDT--S--RPRVMRE 120 (314)
T ss_dssp CSHHHHHHHHHHHHHTTCSEEEEECCCSCTTC-----CHHHHHHHHHHHHHHHHHHHHC-CSEEEEEC--S--CHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhC-CCeEEEeC--C--CHHHHHH
Confidence 57899999999999999998887442 355322 011334677778887753 45554433 2 5778888
Q ss_pred HHHcCcccccc-cccchHHHHHh----------hcCCC--CC-------------HHHHHHHHHHHHHhCCCCce---EE
Q 017179 228 VAKSGLNVFAH-NIETVEELQSA----------VRDHR--AN-------------FKQSLDVLMMAKDYVPAGTL---TK 278 (376)
Q Consensus 228 L~~aGld~i~h-~lEtv~~l~~~----------vr~r~--~t-------------~e~~L~vl~~ak~~~p~Gi~---tk 278 (376)
-.++|.+.+|- +-+..+++++- |..++ .+ .+...+.++.|.+ .|+. +-
T Consensus 121 Al~aGa~iINDVsg~~~~~m~~v~a~~g~~vVlMh~~G~P~tmq~~~~ydvv~ev~~~l~~~i~~a~~---~GI~~~~Ii 197 (314)
T 3tr9_A 121 AVNTGADMINDQRALQLDDALTTVSALKTPVCLMHFPSETRKPGSTTHFYFLQSVKKELQESIQRCKK---AGISEDRII 197 (314)
T ss_dssp HHHHTCCEEEETTTTCSTTHHHHHHHHTCCEEEECCCCTTCCTTSSCHHHHHHHHHHHHHHHHHHHHH---TTCCGGGEE
T ss_pred HHHcCCCEEEECCCCCchHHHHHHHHhCCeEEEECCCCCCcccccccccchHHHHHHHHHHHHHHHHH---cCCCHhHEE
Confidence 88889887743 12222233332 12111 11 2333445566666 4653 33
Q ss_pred EeEEEe---cCCCHHHHHHHHHHHHHc
Q 017179 279 TSIMLG---CGETPDQVVSTMEKVRAA 302 (376)
Q Consensus 279 t~imvG---lGET~ee~~e~L~~Lrel 302 (376)
-+--+| ||.|.++=+++|+.|+++
T Consensus 198 lDPG~G~~~F~Kt~~~n~~lL~~l~~l 224 (314)
T 3tr9_A 198 IDPGFGQGNYGKNVSENFYLLNKLPEF 224 (314)
T ss_dssp EECCCCSGGGCCCHHHHHHHHHTTHHH
T ss_pred EeCCCCchhhcCCHHHHHHHHHHHHHH
Confidence 333458 889998777777666554
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=84.58 E-value=21 Score=36.14 Aligned_cols=134 Identities=16% Similarity=0.228 Sum_probs=82.9
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
++..+.++++.+.|++.|+|.+.... ...+.+.|+.+++.+|++.|-+ ++. .+.+..+.+.++|+|.+-.+
T Consensus 228 ~~~~~~a~~l~~aG~d~I~id~a~g~------~~~~~~~v~~i~~~~p~~~Vi~--g~v-~t~e~a~~l~~aGaD~I~vg 298 (490)
T 4avf_A 228 ADTGERVAALVAAGVDVVVVDTAHGH------SKGVIERVRWVKQTFPDVQVIG--GNI-ATAEAAKALAEAGADAVKVG 298 (490)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECSCCS------BHHHHHHHHHHHHHCTTSEEEE--EEE-CSHHHHHHHHHTTCSEEEEC
T ss_pred cchHHHHHHHhhcccceEEecccCCc------chhHHHHHHHHHHHCCCceEEE--eee-CcHHHHHHHHHcCCCEEEEC
Confidence 45677888999999999999765421 3467899999999988765533 211 15788899999999988653
Q ss_pred cc-chHHHHHhhcCC-CCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC-CCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 240 IE-TVEELQSAVRDH-RANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 240 lE-tv~~l~~~vr~r-~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlG-ET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
.. ...-..+.+..- ...++...++.+.+++ .+++ +|..-| -+.+|+.+.+. +|.+.|-+|..+
T Consensus 299 ~g~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~---~~iP----VIa~GGI~~~~di~kal~----~GAd~V~vGs~~ 364 (490)
T 4avf_A 299 IGPGSICTTRIVAGVGVPQISAIANVAAALEG---TGVP----LIADGGIRFSGDLAKAMV----AGAYCVMMGSMF 364 (490)
T ss_dssp SSCSTTCHHHHHTCBCCCHHHHHHHHHHHHTT---TTCC----EEEESCCCSHHHHHHHHH----HTCSEEEECTTT
T ss_pred CCCCcCCCccccCCCCccHHHHHHHHHHHhcc---CCCc----EEEeCCCCCHHHHHHHHH----cCCCeeeecHHH
Confidence 21 111111112111 2234444444444433 1343 233222 48888888774 589999998665
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=84.40 E-value=9.9 Score=38.58 Aligned_cols=131 Identities=17% Similarity=0.258 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
++..+.++++.+.|++.|+|.+.... ...+.+.|+.|++.+|++.|-+ +.. .+.+..+.+.++|+|.+-.+
T Consensus 230 ~d~~~~a~~l~~aG~d~I~id~a~g~------~~~~~~~i~~ir~~~p~~~Vi~--g~v-~t~e~a~~l~~aGaD~I~Vg 300 (496)
T 4fxs_A 230 PGNEERVKALVEAGVDVLLIDSSHGH------SEGVLQRIRETRAAYPHLEIIG--GNV-ATAEGARALIEAGVSAVKVG 300 (496)
T ss_dssp SCCHHHHHHHHHTTCSEEEEECSCTT------SHHHHHHHHHHHHHCTTCCEEE--EEE-CSHHHHHHHHHHTCSEEEEC
T ss_pred cchHHHHHHHHhccCceEEecccccc------chHHHHHHHHHHHHCCCceEEE--ccc-CcHHHHHHHHHhCCCEEEEC
Confidence 44567788888999999999876421 3567899999999988765433 111 15678899999999988643
Q ss_pred -----ccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 240 -----IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 240 -----lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
.-+. +...-+. ...+....++.+.+++. +++ +|..- --+.+|+.+.+. +|.+.|-+|..+
T Consensus 301 ~g~Gs~~~t-r~~~g~g--~p~~~~i~~v~~~~~~~---~iP----VIa~GGI~~~~di~kala----~GAd~V~iGs~f 366 (496)
T 4fxs_A 301 IGPGSICTT-RIVTGVG--VPQITAIADAAGVANEY---GIP----VIADGGIRFSGDISKAIA----AGASCVMVGSMF 366 (496)
T ss_dssp SSCCTTBCH-HHHHCCC--CCHHHHHHHHHHHHGGG---TCC----EEEESCCCSHHHHHHHHH----TTCSEEEESTTT
T ss_pred CCCCcCccc-ccccCCC--ccHHHHHHHHHHHhccC---CCe----EEEeCCCCCHHHHHHHHH----cCCCeEEecHHH
Confidence 1121 2211121 23455555666665552 343 33322 257888887764 689999898665
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=84.23 E-value=14 Score=32.90 Aligned_cols=122 Identities=18% Similarity=0.227 Sum_probs=73.2
Q ss_pred CCch--hHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEE-EEecCCC------C-CChHHHH
Q 017179 157 PDPD--EPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLI-EALVPDF------R-GNNGCVR 226 (376)
Q Consensus 157 l~~e--Ei~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~I-e~l~pd~------~-g~~e~l~ 226 (376)
..++ ++.+.++++.+.|+..+.+.+ . +.++.|++.. ++.+ .+...+| . ...+.++
T Consensus 31 ~~~~~~~~~~~a~~~~~~G~~~i~~~~----------~----~~i~~i~~~~-~~p~i~~~~~~~~~~~~~i~~~~~~i~ 95 (234)
T 1yxy_A 31 YSETGGIMPLMAKAAQEAGAVGIRANS----------V----RDIKEIQAIT-DLPIIGIIKKDYPPQEPFITATMTEVD 95 (234)
T ss_dssp CCTTCCSHHHHHHHHHHHTCSEEEEES----------H----HHHHHHHTTC-CSCEEEECBCCCTTSCCCBSCSHHHHH
T ss_pred cCCccchHHHHHHHHHHCCCcEeecCC----------H----HHHHHHHHhC-CCCEEeeEcCCCCccccccCChHHHHH
Confidence 4567 889999999999999887631 1 3467777654 2333 2222221 1 1457899
Q ss_pred HHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcE
Q 017179 227 EVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDV 306 (376)
Q Consensus 227 ~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~ 306 (376)
.+.++|+|.+....+... ++.+. ...++++.+++.+| |+. ++++. .|.++ +..+.+.++|+
T Consensus 96 ~~~~~Gad~V~l~~~~~~------~~~~~---~~~~~i~~i~~~~~-~~~----v~~~~-~t~~e----a~~a~~~Gad~ 156 (234)
T 1yxy_A 96 QLAALNIAVIAMDCTKRD------RHDGL---DIASFIRQVKEKYP-NQL----LMADI-STFDE----GLVAHQAGIDF 156 (234)
T ss_dssp HHHTTTCSEEEEECCSSC------CTTCC---CHHHHHHHHHHHCT-TCE----EEEEC-SSHHH----HHHHHHTTCSE
T ss_pred HHHHcCCCEEEEcccccC------CCCCc---cHHHHHHHHHHhCC-CCe----EEEeC-CCHHH----HHHHHHcCCCE
Confidence 999999998865544211 11011 23567777777654 343 22232 45555 55567789999
Q ss_pred E--EeecC
Q 017179 307 M--TFGQY 312 (376)
Q Consensus 307 v--~~~qY 312 (376)
+ +++.+
T Consensus 157 i~~~v~g~ 164 (234)
T 1yxy_A 157 VGTTLSGY 164 (234)
T ss_dssp EECTTTTS
T ss_pred Eeeecccc
Confidence 9 55433
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=83.91 E-value=3.3 Score=42.83 Aligned_cols=135 Identities=16% Similarity=0.166 Sum_probs=82.4
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
++-.+.++++.+.|++-|+|-+-+ +-..+..++++.||+.+|++.|-+ +.. .+.+..+.|.++|+|.+-.+
T Consensus 280 ~d~~eR~~aLv~AGvD~iviD~ah------Ghs~~v~~~i~~ik~~~p~~~via--GNV-aT~e~a~~Li~aGAD~vkVG 350 (556)
T 4af0_A 280 PGDKDRLKLLAEAGLDVVVLDSSQ------GNSVYQIEFIKWIKQTYPKIDVIA--GNV-VTREQAAQLIAAGADGLRIG 350 (556)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCSC------CCSHHHHHHHHHHHHHCTTSEEEE--EEE-CSHHHHHHHHHHTCSEEEEC
T ss_pred ccHHHHHHHHHhcCCcEEEEeccc------cccHHHHHHHHHHHhhCCcceEEe--ccc-cCHHHHHHHHHcCCCEEeec
Confidence 345678899999999999985543 335789999999999999876532 221 16788999999999998655
Q ss_pred ccc-hHHHHHhhcCC-CCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 240 IET-VEELQSAVRDH-RANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 240 lEt-v~~l~~~vr~r-~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
+=. +--..+.+..- .....-.+++-+.+++. |+++-++- | --+.-|+...| ..|-|.|-+|-+|
T Consensus 351 iGpGSiCtTr~v~GvG~PQ~tAi~~~a~~a~~~---~vpvIADG--G-I~~sGDi~KAl----aaGAd~VMlGsll 416 (556)
T 4af0_A 351 MGSGSICITQEVMAVGRPQGTAVYAVAEFASRF---GIPCIADG--G-IGNIGHIAKAL----ALGASAVMMGGLL 416 (556)
T ss_dssp SSCSTTBCCTTTCCSCCCHHHHHHHHHHHHGGG---TCCEEEES--C-CCSHHHHHHHH----HTTCSEEEESTTT
T ss_pred CCCCcccccccccCCCCcHHHHHHHHHHHHHHc---CCCEEecC--C-cCcchHHHHHh----hcCCCEEEEchhh
Confidence 421 11111222211 12244455666666664 45443332 1 13555555544 3566666666555
|
| >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=83.82 E-value=11 Score=35.88 Aligned_cols=120 Identities=15% Similarity=0.224 Sum_probs=77.0
Q ss_pred HHhhCCCcEEEEecCCC--CC--C----hHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCC
Q 017179 202 LKELKPNMLIEALVPDF--RG--N----NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPA 273 (376)
Q Consensus 202 Ik~~~p~i~Ie~l~pd~--~g--~----~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~ 273 (376)
++..+.++..-+++|-- .+ | ...++.+.++|+|.+-.+=-|-+- ..-+.+++.++++.+.+....
T Consensus 8 ~~~~~~Gv~~a~vTPf~~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~-------~~Ls~eEr~~v~~~~v~~~~g 80 (316)
T 3e96_A 8 LAKALETISGIPITPFRKSDGSIDWHHYKETVDRIVDNGIDVIVPCGNTSEF-------YALSLEEAKEEVRRTVEYVHG 80 (316)
T ss_dssp HHHHTSSEEECCCCCBCTTTCCBCHHHHHHHHHHHHTTTCCEECTTSGGGTG-------GGSCHHHHHHHHHHHHHHHTT
T ss_pred hhhcCCceEEeeeCCccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCccccCc-------ccCCHHHHHHHHHHHHHHhCC
Confidence 34445566666666632 22 3 345667778888765433222221 135689999999999886432
Q ss_pred CceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee-cCCCCCCCCCCCcccCC-hHHHHHHHHHHHHHh
Q 017179 274 GTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG-QYMRPSKRHMPVSEYIT-PEAFERYRALGMEMG 342 (376)
Q Consensus 274 Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~-qY~~P~~~~~~v~~~v~-pe~~~~l~~~a~~~g 342 (376)
+.-+|+|.|.+-+|.++..+...++|+|.+-+. +|+.+ .+ .+-+++++.+|...+
T Consensus 81 ----rvpViaGvg~~t~~ai~la~~A~~~Gadavlv~~P~y~~----------~s~~~l~~~f~~va~a~~ 137 (316)
T 3e96_A 81 ----RALVVAGIGYATSTAIELGNAAKAAGADAVMIHMPIHPY----------VTAGGVYAYFRDIIEALD 137 (316)
T ss_dssp ----SSEEEEEECSSHHHHHHHHHHHHHHTCSEEEECCCCCSC----------CCHHHHHHHHHHHHHHHT
T ss_pred ----CCcEEEEeCcCHHHHHHHHHHHHhcCCCEEEEcCCCCCC----------CCHHHHHHHHHHHHHhCC
Confidence 345788887799999999999999999987663 33211 12 234666777777654
|
| >2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A* | Back alignment and structure |
|---|
Probab=83.70 E-value=6.5 Score=37.39 Aligned_cols=139 Identities=14% Similarity=0.104 Sum_probs=85.6
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEee-eCCCCCc----ccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSV-DRDDLAD----QGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK 230 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg-~r~dl~d----~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~ 230 (376)
..+++++++.|+++.+.|.+.|-|=|. .|+.... ...+.+..+|+.|++. ++.|.+=+ + +.+.++.-.+
T Consensus 42 ~~~~~~a~~~a~~~v~~GAdiIDIGgeSTrPga~~v~~~eE~~Rv~pvi~~l~~~--~vpiSIDT--~--~~~Va~aAl~ 115 (294)
T 2y5s_A 42 FLARDDALRRAERMIAEGADLLDIGGESTRPGAPPVPLDEELARVIPLVEALRPL--NVPLSIDT--Y--KPAVMRAALA 115 (294)
T ss_dssp --CTTHHHHHHHHHHHTTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHGGG--CSCEEEEC--C--CHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHhhC--CCeEEEEC--C--CHHHHHHHHH
Confidence 368899999999999999999988552 3554221 1245677777777654 45454322 2 5677887778
Q ss_pred cCcccccc-cccchHHHHHh----------hcCC----C-------C-C-----HHHHHHHHHHHHHhCCCCce---EEE
Q 017179 231 SGLNVFAH-NIETVEELQSA----------VRDH----R-------A-N-----FKQSLDVLMMAKDYVPAGTL---TKT 279 (376)
Q Consensus 231 aGld~i~h-~lEtv~~l~~~----------vr~r----~-------~-t-----~e~~L~vl~~ak~~~p~Gi~---tkt 279 (376)
+|.+.+|- +-+..+++++- |+.+ . | + .+...+.++.+.+ .|+. +--
T Consensus 116 aGa~iINdVsg~~d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~dv~~ev~~~l~~~i~~a~~---~Gi~~~~Iil 192 (294)
T 2y5s_A 116 AGADLINDIWGFRQPGAIDAVRDGNSGLCAMHMLGEPQTMQVGEPDYGDVVTDVRDFLAARAQALRD---AGVAAERICV 192 (294)
T ss_dssp HTCSEEEETTTTCSTTHHHHHSSSSCEEEEECCCEETTTTEECCCCCSSHHHHHHHHHHHHHHHHHH---TTCCGGGEEE
T ss_pred cCCCEEEECCCCCchHHHHHHHHhCCCEEEECCCCCCccccccCCccccHHHHHHHHHHHHHHHHHH---cCCChhhEEE
Confidence 88887753 22222344433 1111 1 1 0 2333445566666 4654 555
Q ss_pred eEEEecCCCH-HHHHHHHHHHHHcC
Q 017179 280 SIMLGCGETP-DQVVSTMEKVRAAG 303 (376)
Q Consensus 280 ~imvGlGET~-ee~~e~L~~Lrel~ 303 (376)
+--+|||.|. ++-+++|+.++++.
T Consensus 193 DPG~Gf~kt~~~~n~~ll~~l~~l~ 217 (294)
T 2y5s_A 193 DPGFGFGKAVVDDNYALLAALPDTA 217 (294)
T ss_dssp ECCTTSSSCTTHHHHHHHHTGGGGS
T ss_pred eCCCcccccchHHHHHHHHHHHHHH
Confidence 6566889999 98888888888765
|
| >2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule biogenesis/degradation, manganese, hydrolase, exopolysaccharide synthesis; 1.90A {Streptococcus pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A | Back alignment and structure |
|---|
Probab=83.70 E-value=13 Score=33.67 Aligned_cols=48 Identities=17% Similarity=0.255 Sum_probs=31.1
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLK 203 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik 203 (376)
..++++.++.++++.+.|++.|++|-=...+..+...+.+.+.+..++
T Consensus 20 ~~~~e~~~e~i~~A~~~Gi~~i~~TdH~~~~~~~~~~~~~~~~~~~l~ 67 (247)
T 2wje_A 20 PKSREESKALLAESYRQGVRTIVSTSHRRKGMFETPEEKIAENFLQVR 67 (247)
T ss_dssp CSSHHHHHHHHHHHHHTTEEEEECCCEEBTTTBCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHH
Confidence 456889999999999999999999964332222222333444444443
|
| >1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ... | Back alignment and structure |
|---|
Probab=83.36 E-value=11 Score=35.94 Aligned_cols=139 Identities=14% Similarity=0.219 Sum_probs=83.3
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEee-eCCCCCcc----cHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSV-DRDDLADQ----GSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKS 231 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg-~r~dl~d~----g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~a 231 (376)
.+++++++.|++..+.|.+.|-|-+. .|+....- -.+.+..+|+.|++.. ++.|.+=+ + +.+.++.-.++
T Consensus 60 ~~~~~a~~~a~~~v~~GAdiIDIGgeStrPga~~v~~~eE~~RvvpvI~~l~~~~-~vpiSIDT--~--~~~V~~aAl~a 134 (297)
T 1tx2_A 60 NEVDAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEV-KLPISIDT--Y--KAEVAKQAIEA 134 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHS-CSCEEEEC--S--CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CceEEEeC--C--CHHHHHHHHHc
Confidence 57899999999999999999988653 34432211 1345666778887654 34444322 2 57888888888
Q ss_pred Cccccccc-ccc-hHHHHHh----------hcCCC-CC--------HHHHHHHHHHHHHhCCCCce---EEEeEEEecCC
Q 017179 232 GLNVFAHN-IET-VEELQSA----------VRDHR-AN--------FKQSLDVLMMAKDYVPAGTL---TKTSIMLGCGE 287 (376)
Q Consensus 232 Gld~i~h~-lEt-v~~l~~~----------vr~r~-~t--------~e~~L~vl~~ak~~~p~Gi~---tkt~imvGlGE 287 (376)
|.+.+|.- .+. .+++++- |..++ .. .+...+.++.+.+ .|+. +--+-.+|||-
T Consensus 135 Ga~iINdvsg~~~d~~m~~~aa~~g~~vVlmh~~G~p~y~d~v~ev~~~l~~~i~~a~~---~GI~~~~IilDPg~Gfgk 211 (297)
T 1tx2_A 135 GAHIINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKD---AGVRDENIILDPGIGFAK 211 (297)
T ss_dssp TCCEEEETTTTSSCTHHHHHHHHHTCCEEEECCCSCCCCSSHHHHHHHHHHHHHHHHHH---TTCCGGGEEEECCTTSSC
T ss_pred CCCEEEECCCCCCCHHHHHHHHHhCCcEEEEeCCCCCCcchHHHHHHHHHHHHHHHHHH---cCCChhcEEEeCCCCcCC
Confidence 99988652 222 2344332 11111 11 2333445556665 4654 55566668899
Q ss_pred CHHHHHHHHHHHHHcC
Q 017179 288 TPDQVVSTMEKVRAAG 303 (376)
Q Consensus 288 T~ee~~e~L~~Lrel~ 303 (376)
+.++-+++|+.++++.
T Consensus 212 ~~~~n~~ll~~l~~l~ 227 (297)
T 1tx2_A 212 TPEQNLEAMRNLEQLN 227 (297)
T ss_dssp CHHHHHHHHHTGGGGG
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9997777777766543
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=82.91 E-value=1.3 Score=40.12 Aligned_cols=75 Identities=9% Similarity=0.105 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccc
Q 017179 161 EPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNI 240 (376)
Q Consensus 161 Ei~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~l 240 (376)
++.+.++.+.+.|++.+.+..-+.... +...+ +.+++|++.. ++.+.+ .....+++.++.+.++|+|.+..+.
T Consensus 33 d~~~~a~~~~~~Gad~i~v~~~d~~~~---~~~~~-~~i~~i~~~~-~ipv~v--~ggI~~~~~~~~~l~~Gad~V~lg~ 105 (244)
T 1vzw_A 33 SPLEAALAWQRSGAEWLHLVDLDAAFG---TGDNR-ALIAEVAQAM-DIKVEL--SGGIRDDDTLAAALATGCTRVNLGT 105 (244)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEHHHHHT---SCCCH-HHHHHHHHHC-SSEEEE--ESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred CHHHHHHHHHHcCCCEEEEecCchhhc---CCChH-HHHHHHHHhc-CCcEEE--ECCcCCHHHHHHHHHcCCCEEEECc
Confidence 778888999999999999875332110 11125 7888888765 344432 2222267889999999999887764
Q ss_pred cc
Q 017179 241 ET 242 (376)
Q Consensus 241 Et 242 (376)
+.
T Consensus 106 ~~ 107 (244)
T 1vzw_A 106 AA 107 (244)
T ss_dssp HH
T ss_pred hH
Confidence 43
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=82.31 E-value=20 Score=32.94 Aligned_cols=119 Identities=16% Similarity=0.135 Sum_probs=73.3
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
..+.+.|++..+.|..-|.+. +.+.+..+.. +.++.|++.. ++. ++..||.-++..+....++|+|.+..+
T Consensus 65 ~~p~~~A~~~~~~GA~~isvl--t~~~~f~G~~----~~l~~i~~~v-~lP--vl~kdfI~d~~qi~~a~~~GAD~VlL~ 135 (254)
T 1vc4_A 65 VDPVEAALAYARGGARAVSVL--TEPHRFGGSL----LDLKRVREAV-DLP--LLRKDFVVDPFMLEEARAFGASAALLI 135 (254)
T ss_dssp CCHHHHHHHHHHTTCSEEEEE--CCCSSSCCCH----HHHHHHHHHC-CSC--EEEESCCCSHHHHHHHHHTTCSEEEEE
T ss_pred CCHHHHHHHHHHcCCCEEEEe--cchhhhccCH----HHHHHHHHhc-CCC--EEECCcCCCHHHHHHHHHcCCCEEEEC
Confidence 778999999999999998773 2223332222 3445555543 233 356788767778888999999988764
Q ss_pred ccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecC
Q 017179 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQY 312 (376)
Q Consensus 240 lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY 312 (376)
....+ ++.-++++.++++ |+.+...+ .+++|.. ...+++.+++.+.+.
T Consensus 136 ~~~l~-------------~~l~~l~~~a~~l---Gl~~lvev-----~~~~E~~----~a~~~gad~IGvn~~ 183 (254)
T 1vc4_A 136 VALLG-------------ELTGAYLEEARRL---GLEALVEV-----HTERELE----IALEAGAEVLGINNR 183 (254)
T ss_dssp HHHHG-------------GGHHHHHHHHHHH---TCEEEEEE-----CSHHHHH----HHHHHTCSEEEEESB
T ss_pred ccchH-------------HHHHHHHHHHHHC---CCeEEEEE-----CCHHHHH----HHHHcCCCEEEEccc
Confidence 32111 2233556666664 55443222 3556543 445567899998754
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=82.16 E-value=6.1 Score=36.60 Aligned_cols=80 Identities=18% Similarity=0.284 Sum_probs=51.8
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCccc---------------HHHHHHHHHHHHhhCCCcEEEEec---CCC
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQG---------------SGHFAQTVRKLKELKPNMLIEALV---PDF 218 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g---------------~~~~~elvr~Ik~~~p~i~Ie~l~---pd~ 218 (376)
.+.++..+.++++.+.|++.|.|-.--.+.+-|+. .....+++++|++.++++.|.++. |-+
T Consensus 28 p~~~~~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~ 107 (268)
T 1qop_A 28 PGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVF 107 (268)
T ss_dssp SCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHHH
Confidence 34578889999999999999988432222223331 133457899999874445555432 212
Q ss_pred -CCChHHHHHHHHcCcccc
Q 017179 219 -RGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 219 -~g~~e~l~~L~~aGld~i 236 (376)
.+..+.++.+.++|+|.+
T Consensus 108 ~~g~~~~~~~~~~aGadgi 126 (268)
T 1qop_A 108 NNGIDAFYARCEQVGVDSV 126 (268)
T ss_dssp TTCHHHHHHHHHHHTCCEE
T ss_pred HhhHHHHHHHHHHcCCCEE
Confidence 133677899999999944
|
| >3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis inhibition, bromopyruvate, amino-acid biosynthesis; HET: FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A 3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A | Back alignment and structure |
|---|
Probab=82.08 E-value=22 Score=37.44 Aligned_cols=142 Identities=11% Similarity=0.085 Sum_probs=88.3
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhC---CCcEEEEecCCCCC-ChHHHHHHHHc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK---PNMLIEALVPDFRG-NNGCVREVAKS 231 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~---p~i~Ie~l~pd~~g-~~e~l~~L~~a 231 (376)
.++.+|-++++++|.++|+++|-... +... ... .+.++.|.+.. ++..|.+|.+...+ .+..++.++.+
T Consensus 89 ~~s~eeKl~Ia~~L~~lGVd~IEaGf---P~as---p~D-~e~v~~i~~~~l~~~~~~i~aL~r~~~~did~a~eal~~a 161 (644)
T 3hq1_A 89 PMSPARKRRMFDLLVRMGYKEIEVGF---PSAS---QTD-FDFVREIIEQGAIPDDVTIQVLTQCRPELIERTFQACSGA 161 (644)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEEEC---TTTC---HHH-HHHHHHHHHTTCSCTTCEEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC---CCCC---hhH-HHHHHHHHhcCCCCCCeEEEEEecCCHhhHHHHHHHHhcC
Confidence 58999999999999999999998754 2111 111 34566666542 47888888874321 12345567788
Q ss_pred CcccccccccchH-HHHHhhcCCCCCHHHHHHHHH----HHHHhCCCCceEEEeEEEec-CC-----CHHHHHHHHHHHH
Q 017179 232 GLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLM----MAKDYVPAGTLTKTSIMLGC-GE-----TPDQVVSTMEKVR 300 (376)
Q Consensus 232 Gld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~----~ak~~~p~Gi~tkt~imvGl-GE-----T~ee~~e~L~~Lr 300 (376)
+.+.+...+-+++ -+...+ +.+.++.++.+. .+++.... . +.+++-+=| +| ..+-+++.++.+.
T Consensus 162 ~~~~Vhif~stSd~h~~~~l---~~s~eevle~~~~~v~~a~~~~~~-~-~~~~~~v~fs~Edasrtd~dfl~ev~~aa~ 236 (644)
T 3hq1_A 162 PRAIVHFYNSTSILQRRVVF---RANRAEVQAIATDGARKCVEQAAK-Y-PGTQWRFEYSPESYTGTELEYAKQVCDAVG 236 (644)
T ss_dssp SEEEEEEEEECCHHHHHHTT---CCCHHHHHHHHHHHHHHHHHHHHH-S-CSSEEEEEEEEETGGGSCHHHHHHHHHHHH
T ss_pred CCCEEEEEecCCHHHHHHHh---CCCHHHHHHHHHHHHHHHHHHhhh-c-cCceEEEEEcCcccCCCCHHHHHHHHHHHH
Confidence 9888888888887 333333 467888887654 33342101 1 122333333 44 4566668888888
Q ss_pred Hc---CCc---EEEe
Q 017179 301 AA---GVD---VMTF 309 (376)
Q Consensus 301 el---~vd---~v~~ 309 (376)
+. +.+ .+.|
T Consensus 237 eaG~~Gad~~~~I~L 251 (644)
T 3hq1_A 237 EVIAPTPERPIIFNL 251 (644)
T ss_dssp HHHCCCSSSCEEEEE
T ss_pred HhcCCCCCceeEEEe
Confidence 75 456 4554
|
| >3c6c_A 3-keto-5-aminohexanoate cleavage enzyme; DUF849 family protein, TIM beta/alpha-barrel fold, structura genomics; HET: MSE; 1.72A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=81.06 E-value=3.6 Score=39.64 Aligned_cols=88 Identities=11% Similarity=0.160 Sum_probs=58.4
Q ss_pred EEEEeeeCCccCCCCcCCCCCCC--CCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCC-CCcccHHHHHHHHHHHHh
Q 017179 129 TATIMILGDTCTRGCRFCNVKTS--RAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDD-LADQGSGHFAQTVRKLKE 204 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~--r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~d-l~d~g~~~~~elvr~Ik~ 204 (376)
.-||..+.+.|.-.|.-+.-... ..|. +++|+||.+.|.+..+.|..-|+|=.=+.+| -+....+.|.+++..|++
T Consensus 14 ~~~~~~~~~kviIt~A~tGa~~t~~~~P~lPvTpeEIa~~A~~a~~AGAaivHlHvRd~~~G~ps~d~~~y~e~~~~IR~ 93 (316)
T 3c6c_A 14 NLYFQGMSRKVILTCAVTGNAPFNPKHPSMPITPAQIADACVEAAKAGASVAHIHVRDPKTGGGSRDPVLFKEVVDRVRS 93 (316)
T ss_dssp -------CCEECEEEECCCSSCCCTTSTTCCCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHHHHHHHHHT
T ss_pred cccccCCCCCeEEEEecCCCcCCccCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHH
Confidence 44555566666666765544322 3343 6899999999999999999888875444212 222237889999999998
Q ss_pred hCCCcEEEEecC
Q 017179 205 LKPNMLIEALVP 216 (376)
Q Consensus 205 ~~p~i~Ie~l~p 216 (376)
..|++.|.+.++
T Consensus 94 ~~~d~ii~~TTg 105 (316)
T 3c6c_A 94 SGTDIVLNLTCG 105 (316)
T ss_dssp TTCCCEEEEECC
T ss_pred HCCCeEEEeCCC
Confidence 878999988775
|
| >3e49_A Uncharacterized protein DUF849 with A TIM barrel; structural genomics, joint center for structural genomics; HET: MSE; 1.75A {Burkholderia xenovorans LB400} | Back alignment and structure |
|---|
Probab=81.05 E-value=14 Score=35.47 Aligned_cols=83 Identities=18% Similarity=0.185 Sum_probs=56.6
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeC-CCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCC--CChHHHHHHHHcC
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDR-DDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFR--GNNGCVREVAKSG 232 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r-~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~--g~~e~l~~L~~aG 232 (376)
+++++||.+.|.+..+.|..-|+|=.=+. +.-+....+.|.+++..|++..| +.|.+.++.-. ..++.+..+.+..
T Consensus 28 PvTpeEia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~~~e~~~~IR~~~d-~iI~~TTgg~~~~~~eerla~~~~~~ 106 (311)
T 3e49_A 28 PVTPDEVAQASIGAAEAGAAVIHLHARDPRDGRPTQDPAAFAEFLPRIKSNTD-AVINLTTGGSPHMTVEERLRPATHYM 106 (311)
T ss_dssp CCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHTTHHHHHHHHCC-CEEEECSCSCTTSCHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHhCC-cEEEECCCCCCCCCHHHHHHHHHhcC
Confidence 69999999999999999998777754332 12222236789999999999875 66666554211 1345566666656
Q ss_pred ccccccc
Q 017179 233 LNVFAHN 239 (376)
Q Consensus 233 ld~i~h~ 239 (376)
+|....|
T Consensus 107 Pe~aSln 113 (311)
T 3e49_A 107 PELASLN 113 (311)
T ss_dssp CSEEEEE
T ss_pred CCeeeec
Confidence 7665444
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=80.58 E-value=18 Score=36.71 Aligned_cols=132 Identities=16% Similarity=0.258 Sum_probs=83.2
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
++..+.++++.+.|++.|+|.+.+. ....+.++|+.|++.+|++.|-+ .+. .+.+..+.+.++|+|.+-.+
T Consensus 255 ~d~~era~aLveaGvd~I~Id~a~g------~~~~v~~~i~~i~~~~~~~~vi~--g~v-~t~e~a~~~~~aGad~i~vg 325 (511)
T 3usb_A 255 ADAMTRIDALVKASVDAIVLDTAHG------HSQGVIDKVKEVRAKYPSLNIIA--GNV-ATAEATKALIEAGANVVKVG 325 (511)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECSCT------TSHHHHHHHHHHHHHCTTSEEEE--EEE-CSHHHHHHHHHHTCSEEEEC
T ss_pred cchHHHHHHHHhhccceEEeccccc------chhhhhhHHHHHHHhCCCceEEe--eee-ccHHHHHHHHHhCCCEEEEC
Confidence 4567778899999999999986542 24568899999999988754432 111 15778899999999988543
Q ss_pred ccc-h---HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 240 IET-V---EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 240 lEt-v---~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
+.. . .+...-+. ..++....++.+.+++. +++ +|..- --+.+|+.+.+. +|.+.|-+|..+
T Consensus 326 ~g~gsi~~~~~~~g~g--~p~~~~l~~v~~~~~~~---~iP----VIa~GGI~~~~di~kala----~GA~~V~vGs~~ 391 (511)
T 3usb_A 326 IGPGSICTTRVVAGVG--VPQLTAVYDCATEARKH---GIP----VIADGGIKYSGDMVKALA----AGAHVVMLGSMF 391 (511)
T ss_dssp SSCSTTCCHHHHHCCC--CCHHHHHHHHHHHHHTT---TCC----EEEESCCCSHHHHHHHHH----TTCSEEEESTTT
T ss_pred CCCccccccccccCCC--CCcHHHHHHHHHHHHhC---CCc----EEEeCCCCCHHHHHHHHH----hCchhheecHHH
Confidence 321 1 12211121 22344444555555542 333 33322 258888887764 799999998665
|
| >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* | Back alignment and structure |
|---|
Probab=80.40 E-value=11 Score=42.23 Aligned_cols=79 Identities=22% Similarity=0.212 Sum_probs=57.3
Q ss_pred CCchhHHHHHHHHHHC--CCcEEEEEeeeCC-----CCCcccHHHHHHHHHHHHhhCCCcEEEEec--CCCCC-------
Q 017179 157 PDPDEPTNVAEAIASW--GLDYVVITSVDRD-----DLADQGSGHFAQTVRKLKELKPNMLIEALV--PDFRG------- 220 (376)
Q Consensus 157 l~~eEi~~~a~al~~~--G~~eIvLTsg~r~-----dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~--pd~~g------- 220 (376)
++.++.+.+++++.+. |+..+-..||+.- -+.+. =.+.++.|++..|++.+..+. ++..|
T Consensus 552 ~~~~~kl~ia~~L~~~~~G~~~lE~~Gga~~e~~~~~~~e~----~~e~l~~l~~~~~~~~~~~l~R~~n~vgy~~~pd~ 627 (1150)
T 3hbl_A 552 VRTKDMINIASKTADVFKDGFSLEMWGGATFDVAYNFLKEN----PWERLERLRKAIPNVLFQMLLRASNAVGYKNYPDN 627 (1150)
T ss_dssp CCHHHHHHHHHHHHHHTTTCSEEEEEETTHHHHHHHTSCCC----HHHHHHHHHHHCCSSEEEEEEETTTBTCSSCCCHH
T ss_pred CCHHHHHHHHHHHHHhhCCCcEEeecCCceEEecccccCCC----HHHHHHHHHHhCCCCeEEEEeccccccccccCCch
Confidence 7899999999999998 9999998887521 11111 136778888888999988877 22222
Q ss_pred -ChHHHHHHHHcCccccccc
Q 017179 221 -NNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 221 -~~e~l~~L~~aGld~i~h~ 239 (376)
..+.++...++|+|++...
T Consensus 628 v~~~~v~~a~~~Gvd~irif 647 (1150)
T 3hbl_A 628 VIHKFVQESAKAGIDVFRIF 647 (1150)
T ss_dssp HHHHHHHHHHHTTCCEEEEE
T ss_pred hHHHHHHHHHhCCcCEEEEE
Confidence 2445788889999988664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 376 | ||||
| d1r30a_ | 312 | c.1.28.1 (A:) Biotin synthase {Escherichia coli [T | 2e-11 |
| >d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Biotin synthase domain: Biotin synthase species: Escherichia coli [TaxId: 562]
Score = 62.3 bits (150), Expect = 2e-11
Identities = 36/259 (13%), Positives = 79/259 (30%), Gaps = 18/259 (6%)
Query: 78 KPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGD 137
+P+W + +L E L + EA+ + + + I
Sbjct: 1 RPRWTLSQV----------TELFEKPLLDLLFEAQ--QVHRQHFDPRQVQVSTLLSIKTG 48
Query: 138 TCTRGCRFCNV-KTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFA 196
C C++C + + A +
Sbjct: 49 ACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMP 108
Query: 197 QTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRAN 256
+ ++ +K L + + R +GL+ + HN++T E +
Sbjct: 109 YLEQMVQGVKAMGLEACMTLGTLSESQAQRLA-NAGLDYYNHNLDTSPEFYGNII-TTRT 166
Query: 257 FKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPS 316
+++ LD L +D AG + ++G GET + ++ + M
Sbjct: 167 YQERLDTLEKVRD---AGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVK 223
Query: 317 KRHMPVSEYITPEAFERYR 335
+ P+++ +AF+ R
Sbjct: 224 VKGTPLADNDDVDAFDFIR 242
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 376 | |||
| d1r30a_ | 312 | Biotin synthase {Escherichia coli [TaxId: 562]} | 99.94 | |
| d1olta_ | 441 | Oxygen-independent coproporphyrinogen III oxidase | 99.56 | |
| d1tv8a_ | 327 | Molybdenum cofactor biosynthesis protein A MoaA {S | 99.37 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 94.52 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 94.2 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 93.4 | |
| d1nvma2 | 289 | 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d | 90.63 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 88.83 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 84.32 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 83.06 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 82.37 | |
| d1n7ka_ | 234 | Deoxyribose-phosphate aldolase DeoC {Archaeon Aero | 81.24 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 80.03 |
| >d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Biotin synthase domain: Biotin synthase species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=1.4e-25 Score=213.85 Aligned_cols=235 Identities=15% Similarity=0.226 Sum_probs=177.3
Q ss_pred HHHHHHhhcChhhhhhhcCCCCcccccCCCCCCccEEEE-eeeCCccCCCCcCCCCCCCCC-C----CCCCchhHHHHHH
Q 017179 94 QIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATI-MILGDTCTRGCRFCNVKTSRA-P----PPPDPDEPTNVAE 167 (376)
Q Consensus 94 ~~~~~l~~~~L~tvce~A~cpn~~ec~~~~~~~~~tat~-m~i~d~C~~~C~FC~v~~~r~-~----~~l~~eEi~~~a~ 167 (376)
++..++ +..|..++..|...+. ..|++. -....+. ++.||+|+.+|.||+++.... . ..++++++++.++
T Consensus 8 e~~~L~-~~~~~dL~~~A~~v~r-~~~~~~--~~~~~~~~~~~TngC~~~C~fC~~~~~~~~~~~~~~~~~~e~i~~~~~ 83 (312)
T d1r30a_ 8 QVTELF-EKPLLDLLFEAQQVHR-QHFDPR--QVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESAR 83 (312)
T ss_dssp TTHHHH-HSCHHHHHHHHHHHHH-HHSCTT--CCEEEEEEEEECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHHH
T ss_pred HHHHHH-cCCHHHHHHHHHHHHH-HHcCCC--EEEEeeeeEeeCCCCCCcCCcCCCCccCCCCCccccccchHHHHHHHH
Confidence 444555 3567777777765544 235543 1122223 345999999999999875321 1 1379999999999
Q ss_pred HHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccchHHHH
Q 017179 168 AIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQ 247 (376)
Q Consensus 168 al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~~l~ 247 (376)
++.+.|+++++++++..+... ...+++.++++.+++..+ .+.+-.... +.+.++.|+++|++.+.+++|+.++++
T Consensus 84 ~~~~~G~~~~~~~~g~~~~~~-~~~~~~~~~i~~~~~~~~--~~~~~~~~l--~~e~l~~lk~aG~~~i~~~iEs~~~~~ 158 (312)
T d1r30a_ 84 KAKAAGSTRFCMGAAWKNPHE-RDMPYLEQMVQGVKAMGL--EACMTLGTL--SESQAQRLANAGLDYYNHNLDTSPEFY 158 (312)
T ss_dssp HHHHTTCSEEEEEECCSSCCT-TTHHHHHHHHHHHHHTTS--EEEEECSSC--CHHHHHHHHHHCCCEEECCCBSCHHHH
T ss_pred HHHHcCCEEEEEccCCCCCch-hhHHHHHHHHHhcccccc--eeeeccccc--hHHHHHHhhcccceeEecccchhhhhh
Confidence 999999999999998654332 337789999999887654 343333333 789999999999999999999999888
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCc--EEEeecCCCCCCCCCCCccc
Q 017179 248 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVD--VMTFGQYMRPSKRHMPVSEY 325 (376)
Q Consensus 248 ~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd--~v~~~qY~~P~~~~~~v~~~ 325 (376)
..++ ++.++++++++++.|++. |+.+++++|+|+|||.+|+++++..|++++.+ .+.++.+ .| ..++++...
T Consensus 159 ~~~~-~~~~~~~~~~~~~~a~~~---Gi~~~~~~i~G~~et~~d~~~~l~~l~~l~~~~~~i~~~~~-~p-~~gT~l~~~ 232 (312)
T d1r30a_ 159 GNII-TTRTYQERLDTLEKVRDA---GIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINML-VK-VKGTPLADN 232 (312)
T ss_dssp HHHC-CSSCHHHHHHHHHHHHHH---HCEEECCEEECSSCCHHHHHHHHHHHHSSSSCCSEEEEEEC-CC-CTTSTTSSC
T ss_pred ccCC-CCCCHHHHHHHHHHHHHh---ccceecceEecCcCcHHHHHHHHHHHHhcCCCCCeeeeccc-cC-CCCcccccc
Confidence 8888 689999999999999995 89999999999999999999999999998764 6666433 46 357777766
Q ss_pred CChHHHHHHHHHHHHHhh
Q 017179 326 ITPEAFERYRALGMEMGF 343 (376)
Q Consensus 326 v~pe~~~~l~~~a~~~gf 343 (376)
..+...+.++.+|..+=|
T Consensus 233 ~~~~~~e~l~~iA~~Rl~ 250 (312)
T d1r30a_ 233 DDVDAFDFIRTIAVARIM 250 (312)
T ss_dssp CCCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHh
Confidence 556666777777766544
|
| >d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Oxygen-independent coproporphyrinogen III oxidase HemN domain: Oxygen-independent coproporphyrinogen III oxidase HemN species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=1.9e-14 Score=143.84 Aligned_cols=178 Identities=17% Similarity=0.251 Sum_probs=133.5
Q ss_pred EEEEeeeCCccCCCCcCCCCCCC--CCCCCCC--chhHHHHHHHHH----HCCCcEEEEEeeeCCCCCcccHHHHHHHHH
Q 017179 129 TATIMILGDTCTRGCRFCNVKTS--RAPPPPD--PDEPTNVAEAIA----SWGLDYVVITSVDRDDLADQGSGHFAQTVR 200 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~--r~~~~l~--~eEi~~~a~al~----~~G~~eIvLTsg~r~dl~d~g~~~~~elvr 200 (376)
..-|+-+ --|...|.||.+.+. +.....+ .+-+.++++..+ ...+..|.+-||+..-++ .+.+.++++
T Consensus 50 lsLYiHi-PFC~~~C~yC~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~v~~i~~GGGTPt~L~---~~~l~~ll~ 125 (441)
T d1olta_ 50 LSLYVHI-PFCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLN---KAQISRLMK 125 (441)
T ss_dssp EEEEEEE-CEESSCCTTCCSSCEECSCTHHHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEESCGGGSC---HHHHHHHHH
T ss_pred eEEEEEe-CCCCCCCCCCcCeeecCCCcchHHHHHHHHHHHHHHhhHhcCCCccceeEecCCCcCCCC---HHHHHHHHH
Confidence 4455543 479999999998753 2111111 122333333322 334678888888755454 467888888
Q ss_pred HHHhhCCC-----cEEEEecCCCCCChHHHHHHHHcCcccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCC
Q 017179 201 KLKELKPN-----MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAG 274 (376)
Q Consensus 201 ~Ik~~~p~-----i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~G 274 (376)
.|++.++- +.+|+ .|... +.+.++.|+++|++.+..++++. +++++.|+ |.++.++..++++.+++. |
T Consensus 126 ~l~~~~~~~~~~e~t~E~-~P~~~-~~~~l~~l~~~G~nRiSlGvQs~~~~vl~~i~-R~~~~~~~~~~~~~~r~~---g 199 (441)
T d1olta_ 126 LLRENFQFNADAEISIEV-DPREI-ELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVN-REQDEEFIFALLNHAREI---G 199 (441)
T ss_dssp HHHHHSCEEEEEEEEEEE-CSSSC-CTHHHHHHHHTTCCEEEEEEECCCHHHHHHHT-CCCCHHHHHHHHHHHHHT---T
T ss_pred HHhhhccccchhcccccc-ccccc-chHHHHHHHHhCCceEEecchhcchhhhhhhh-cCCCHHHHHHHHHHHHhc---c
Confidence 88887642 34443 44332 78899999999999999999976 59999999 999999999999999994 6
Q ss_pred ce-EEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCC
Q 017179 275 TL-TKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPS 316 (376)
Q Consensus 275 i~-tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~ 316 (376)
+. ++.++|+|+ |||.+++.++|+.+.++++|.|.+++|. .|+
T Consensus 200 ~~~vn~DLI~GlPgqT~~~~~~tl~~~~~l~pd~is~y~~~~~p~ 244 (441)
T d1olta_ 200 FTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPT 244 (441)
T ss_dssp CCSCEEEEEESCTTCCHHHHHHHHHHHHHHCCSEEEEEECCCCTT
T ss_pred cceeecccccccCCcchHHHHHHHHHHHhhCCCccccccceeccc
Confidence 64 899999999 9999999999999999999999999995 553
|
| >d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: MoCo biosynthesis proteins domain: Molybdenum cofactor biosynthesis protein A MoaA species: Staphylococcus aureus [TaxId: 1280]
Probab=99.37 E-value=2e-11 Score=114.19 Aligned_cols=192 Identities=16% Similarity=0.230 Sum_probs=139.2
Q ss_pred EeeeCCccCCCCcCCCCCCCCC--------CCCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHH
Q 017179 132 IMILGDTCTRGCRFCNVKTSRA--------PPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLK 203 (376)
Q Consensus 132 ~m~i~d~C~~~C~FC~v~~~r~--------~~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik 203 (376)
.+-+|+.|+.+|+||....... ...|+.|++.+.++.+.++|+..+.+|||+..-.+| +.+++.++.
T Consensus 15 ~ieiT~~CNlrC~~C~~~~~~~~~~~~~~~~~~ls~e~~~~li~~~~~~g~~~v~~~GGEp~l~~~-----~~e~i~~~~ 89 (327)
T d1tv8a_ 15 RLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRD-----LDVLIAKLN 89 (327)
T ss_dssp EEECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHTTCCEEEEESSCGGGSTT-----HHHHHHHHT
T ss_pred EEEeccccCCcCcCCCCccccCCCCccCCccccCCHHHHHHHHHHHHHcCCeEEEeCCCccccccc-----HHHHHHHHh
Confidence 3668999999999996542110 113899999999999999999999999997432233 566666665
Q ss_pred hhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEE
Q 017179 204 ELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIM 282 (376)
Q Consensus 204 ~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~im 282 (376)
+... ....+++-...-+++.++.|+++|++.+...++..+ +.+..++..+..++..++.++.+++ .|+.+...++
T Consensus 90 ~~~~-~~~~~~Tng~ll~~~~~~~l~~~g~~~i~iSldg~~~e~~~~~rg~~g~~~~~~~~~~~~~~---~g~~~~~~~~ 165 (327)
T d1tv8a_ 90 QIDG-IEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATS---IGLNVKVNVV 165 (327)
T ss_dssp TCTT-CCEEEEEECSTTHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHH---TTCEEEEEEE
T ss_pred hhcc-ccccccccccccchhHHHHHHHcCCCEEeeecccCCHHHhhhheeeccccchhhhHHHHHHH---cCCCcceeEE
Confidence 5432 333333322222688899999999999999999875 8888888667889999999999999 4788888887
Q ss_pred EecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCC-CCCCCCcccCChHHHHH
Q 017179 283 LGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPS-KRHMPVSEYITPEAFER 333 (376)
Q Consensus 283 vGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~-~~~~~v~~~v~pe~~~~ 333 (376)
+--|.+..++.+.++.+.+.+++...+ +++.+. ........++++++...
T Consensus 166 v~~~~n~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 216 (327)
T d1tv8a_ 166 IQKGINDDQIIPMLEYFKDKHIEIRFI-EFMDVGNDNGWDFSKVVTKDEMLT 216 (327)
T ss_dssp ECTTTTGGGHHHHHHHHHHTTCCEEEE-ECCCBCSSSSBCCSSCCCHHHHHH
T ss_pred EecCccccccHHHHHHHHhhcccccee-eeecccCcccccccccccHHHHHH
Confidence 766899999999999999999986554 444332 22222334445554433
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=94.52 E-value=0.46 Score=41.21 Aligned_cols=112 Identities=16% Similarity=0.185 Sum_probs=86.8
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.++++....++++.+.|++-|=||-- . +. -.+.|+.+++.+|++.|.+-+ -. +.+.++...++|++.+
T Consensus 24 ~~~~~a~~~~~al~~~Gi~~iEitl~--t--p~-----a~~~I~~l~~~~p~~~vGaGT-V~--~~~~~~~a~~aGa~Fi 91 (213)
T d1wbha1 24 KKLEHAVPMAKALVAGGVRVLNVTLR--T--EC-----AVDAIRAIAKEVPEAIVGAGT-VL--NPQQLAEVTEAGAQFA 91 (213)
T ss_dssp SSGGGHHHHHHHHHHTTCCEEEEESC--S--TT-----HHHHHHHHHHHCTTSEEEEES-CC--SHHHHHHHHHHTCSCE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCC--C--hh-----HHHHHHHHHHHCCCCeeeccc-cc--cHHHHHHHHHCCCcEE
Confidence 57899999999999999999988852 1 21 467899999999998887533 11 7899999999998865
Q ss_pred cccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
|. +..+ .++++.+++ .|+..-.++ .|..|+...+ +.|.+.+-+|
T Consensus 92 -------------vS-P~~~----~~v~~~a~~---~~i~~iPGv-----~TpsEi~~A~----~~G~~~vKlF 135 (213)
T d1wbha1 92 -------------IS-PGLT----EPLLKAATE---GTIPLIPGI-----STVSELMLGM----DYGLKEFKFF 135 (213)
T ss_dssp -------------EE-SSCC----HHHHHHHHH---SSSCEEEEE-----SSHHHHHHHH----HTTCCEEEET
T ss_pred -------------EC-CCCC----HHHHHHHHh---cCCCccCCc-----CCHHHHHHHH----HCCCCEEEec
Confidence 33 2332 377888888 468888888 5999988754 6899999887
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=94.20 E-value=0.48 Score=41.15 Aligned_cols=112 Identities=19% Similarity=0.256 Sum_probs=86.0
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.++++....++++.+.|++.+=||--+ + .-.+.|+.+++.+|++.|.+-+= . +.+.++...++|++.+
T Consensus 26 ~~~~~a~~~~~al~~~Gi~~iEitl~~----p-----~a~~~i~~l~~~~p~~~vGaGTV-~--~~~~~~~a~~aGa~Fi 93 (216)
T d1mxsa_ 26 AREEDILPLADALAAGGIRTLEVTLRS----Q-----HGLKAIQVLREQRPELCVGAGTV-L--DRSMFAAVEAAGAQFV 93 (216)
T ss_dssp SCGGGHHHHHHHHHHTTCCEEEEESSS----T-----HHHHHHHHHHHHCTTSEEEEECC-C--SHHHHHHHHHHTCSSE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCC----h-----hHHHHHHHHHHhCCCcceeeeee-e--cHHHHHHHHhCCCCEE
Confidence 468999999999999999998888421 2 24678999999999988876431 1 6899999999998865
Q ss_pred cccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
|. +..+ .++++.+++ .|+..-.++ .|..|+...+ ++|.+.+-+|
T Consensus 94 -------------vs-P~~~----~~v~~~a~~---~~i~~iPGv-----~TpsEi~~A~----~~G~~~vKlF 137 (216)
T d1mxsa_ 94 -------------VT-PGIT----EDILEAGVD---SEIPLLPGI-----STPSEIMMGY----ALGYRRFKLF 137 (216)
T ss_dssp -------------EC-SSCC----HHHHHHHHH---CSSCEECEE-----CSHHHHHHHH----TTTCCEEEET
T ss_pred -------------EC-CCCc----HHHHHHHHh---cCCCccCCc-----CCHHHHHHHH----HCCCCEEEec
Confidence 33 2333 467788888 468777787 5999987754 6789998887
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=93.40 E-value=0.99 Score=38.93 Aligned_cols=112 Identities=21% Similarity=0.300 Sum_probs=85.7
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.+.++....++++.+.|++.|=||- +. +. -.+.|+.+++.+|++.|.+-+ -. +.+.++...++|++.+
T Consensus 23 ~~~~~~~~~~~al~~~Gi~~iEitl--~~--~~-----a~~~I~~l~~~~p~~~vGaGT-V~--~~~~~~~a~~aGa~Fi 90 (212)
T d1vhca_ 23 DNADDILPLADTLAKNGLSVAEITF--RS--EA-----AADAIRLLRANRPDFLIAAGT-VL--TAEQVVLAKSSGADFV 90 (212)
T ss_dssp SSGGGHHHHHHHHHHTTCCEEEEET--TS--TT-----HHHHHHHHHHHCTTCEEEEES-CC--SHHHHHHHHHHTCSEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeC--CC--hh-----HHHHHHHHHhcCCCceEeeee-cc--cHHHHHHHHhhCCcEE
Confidence 4689999999999999999999884 21 21 367889999999998887633 11 6889999999998865
Q ss_pred cccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
|. +..+ .++++.+++ .++..-.++ .|..|+.+.+ ++|.+++-+|
T Consensus 91 -------------vS-P~~~----~~v~~~a~~---~~i~~iPGv-----~TpsEi~~A~----~~G~~~vK~F 134 (212)
T d1vhca_ 91 -------------VT-PGLN----PKIVKLCQD---LNFPITPGV-----NNPMAIEIAL----EMGISAVKFF 134 (212)
T ss_dssp -------------EC-SSCC----HHHHHHHHH---TTCCEECEE-----CSHHHHHHHH----HTTCCEEEET
T ss_pred -------------EC-CCCC----HHHHHHHHh---cCCCccCCc-----CCHHHHHHHH----HCCCCEEEEc
Confidence 33 2333 367888888 467777787 4999987754 6899999987
|
| >d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain species: Pseudomonas sp. [TaxId: 306]
Probab=90.63 E-value=0.64 Score=40.88 Aligned_cols=140 Identities=12% Similarity=0.086 Sum_probs=85.2
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCC--CCcc--cHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD--LADQ--GSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKS 231 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~d--l~d~--g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~a 231 (376)
.++.++..+.++.+.+.|+++|-+.++.... ..+. ....-.+.++.+....+...+..+...-....+.+....++
T Consensus 25 ~~s~e~k~~i~~~L~~~Gv~~IEvG~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 104 (289)
T d1nvma2 25 QYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEISHAQIATLLLPGIGSVHDLKNAYQA 104 (289)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCSSSEEEEEECBTTBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccchhhhccchHHHHHHHHHHhcchhHHHHHHhhhhhhHHHHHHHHHh
Confidence 4889999999999999999999886442111 0000 01113455666666555566665543222356667777778
Q ss_pred CcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 232 GLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 232 Gld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
+.+.+..... ....+...+.++.+++. |+.+..+++.-..-+.+.+.+.++.+.+.+++.|.+.
T Consensus 105 ~~~~~r~~~~------------~~~~~~~~~~~~~a~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~I~l~ 168 (289)
T d1nvma2 105 GARVVRVATH------------CTEADVSKQHIEYARNL---GMDTVGFLMMSHMIPAEKLAEQGKLMESYGATCIYMA 168 (289)
T ss_dssp TCCEEEEEEE------------TTCGGGGHHHHHHHHHH---TCEEEEEEESTTSSCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred cccceEEEee------------hhhhhhHhHHHHHHHHh---CCceeeEeeeccccCchhhhHHHHhhccccceeeeec
Confidence 8776544321 11223334556666663 5655555554445566667788888888888887774
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=88.83 E-value=2.7 Score=35.71 Aligned_cols=112 Identities=20% Similarity=0.251 Sum_probs=80.6
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhh-CCCcEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL-KPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~-~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
-++++....++++.+.|++-+=||- |. ++ -.+.|+.|++. .|++.|.+-+= . +.+.++...++|++.
T Consensus 18 ~~~~~a~~~~~al~~~Gi~~iEitl--r~--p~-----a~~~i~~l~~~~~~~~~vGaGTV-~--~~~~~~~a~~aGa~f 85 (202)
T d1wa3a1 18 NSVEEAKEKALAVFEGGVHLIEITF--TV--PD-----ADTVIKELSFLKEKGAIIGAGTV-T--SVEQCRKAVESGAEF 85 (202)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEET--TS--TT-----HHHHHHHTHHHHHTTCEEEEESC-C--SHHHHHHHHHHTCSE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEec--CC--cc-----HHHHHHHHHHhcCCCcEEEeccc-c--cHHHHHHHHhhcccE
Confidence 3689999999999999999988873 21 22 35677777653 47887765331 1 678999999999886
Q ss_pred ccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 236 FAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 236 i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
+ |. ++.+ .++++.+++. |+..-.++ .|..|+...+ +.|.+.+.++
T Consensus 86 i-------------vs-P~~~----~~v~~~~~~~---~i~~iPGv-----~TpsEi~~A~----~~G~~~lK~f 130 (202)
T d1wa3a1 86 I-------------VS-PHLD----EEISQFCKEK---GVFYMPGV-----MTPTELVKAM----KLGHTILKLF 130 (202)
T ss_dssp E-------------EC-SSCC----HHHHHHHHHH---TCEEECEE-----CSHHHHHHHH----HTTCCEEEET
T ss_pred E-------------eC-CCCc----HHHHHHHHhc---CCceeCCc-----CcHHHHHHHH----HCCCCEEEec
Confidence 5 33 3443 3677777773 57777777 5888888775 5888888875
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=84.32 E-value=2.4 Score=37.08 Aligned_cols=78 Identities=13% Similarity=0.171 Sum_probs=57.0
Q ss_pred hHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHH
Q 017179 222 NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVR 300 (376)
Q Consensus 222 ~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET~ee~~e~L~~Lr 300 (376)
.+.++.+.+.|++.+-.+--+.+- ..-+.+++.++++.+.+... -+..+|+|. +.+-+|.++..+..+
T Consensus 27 ~~~i~~l~~~Gv~gl~~~G~tGE~-------~~Ls~~Er~~l~~~~~~~~~----~~~~vi~gv~~~s~~~~i~~a~~a~ 95 (292)
T d1xkya1 27 TKLVNYLIDNGTTAIVVGGTTGES-------PTLTSEEKVALYRHVVSVVD----KRVPVIAGTGSNNTHASIDLTKKAT 95 (292)
T ss_dssp HHHHHHHHHTTCCEEEESSTTTTG-------GGSCHHHHHHHHHHHHHHHT----TSSCEEEECCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEECeEccch-------hhCCHHHHHHHHHHHHHHhC----CCceEEEecCcccHHHHHHHHHHHH
Confidence 456777788888876543223221 13568889999988888532 256788899 788999999999999
Q ss_pred HcCCcEEEee
Q 017179 301 AAGVDVMTFG 310 (376)
Q Consensus 301 el~vd~v~~~ 310 (376)
++|.|.+-+.
T Consensus 96 ~~Gad~ilv~ 105 (292)
T d1xkya1 96 EVGVDAVMLV 105 (292)
T ss_dssp HTTCSEEEEE
T ss_pred HcCCCEEEEC
Confidence 9999987774
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=83.06 E-value=11 Score=33.99 Aligned_cols=149 Identities=10% Similarity=0.020 Sum_probs=86.7
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecC-----CCCC----ChHHHHH
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVP-----DFRG----NNGCVRE 227 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~p-----d~~g----~~e~l~~ 227 (376)
...-+|++.|+...++|++++++.-.+...-...+...+.++|+.|.+.. .+.|.+--+ |... ..|..+.
T Consensus 45 r~iGdP~~~a~~~~~~gaDeL~ivDidas~~~~~~~~~~~~~I~~i~~~~-~vPi~vGGGIrsi~di~~~~~~~~e~A~~ 123 (323)
T d1jvna1 45 RNLGKPVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTV-FVPLTVGGGIKDIVDVDGTKIPALEVASL 123 (323)
T ss_dssp --CHHHHHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTC-CSCEEEESSCSCEECTTCCEECHHHHHHH
T ss_pred cccCCHHHHHHHHHHCCCCEEEEEECcCCCCCcCCCchHHHHHHhhcccc-ceeEEEecCcccHHHhhhccchhhHHHHH
Confidence 34568999999999999999999655421100011234678888886643 234432211 1100 1466789
Q ss_pred HHHcCcccccccccch--HHHHHhhcCCCCCHHHHHHHHHHHHHhCCC-CceEEEeEEEecC------------------
Q 017179 228 VAKSGLNVFAHNIETV--EELQSAVRDHRANFKQSLDVLMMAKDYVPA-GTLTKTSIMLGCG------------------ 286 (376)
Q Consensus 228 L~~aGld~i~h~lEtv--~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~-Gi~tkt~imvGlG------------------ 286 (376)
|.++|+|.+..|=..+ ++.+..+..+..+.. .++.+.+.++. -+.+.-++.-+.+
T Consensus 124 ll~~GadKVvI~T~ai~~p~~~~e~~~~~~n~~----li~~i~~~fGsq~IvvsiD~k~~~~~~~~~~~~~~~~~~~~~~ 199 (323)
T d1jvna1 124 YFRSGADKVSIGTDAVYAAEKYYELGNRGDGTS----PIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYPGP 199 (323)
T ss_dssp HHHHTCSEEEECHHHHHHHHHHHHTTSCCCSCS----HHHHHHHHHCGGGEEEEECEEEEEESSGGGCSSCCEECSSCCT
T ss_pred HHHcCCCeEEechHHhhChHHHHHHHhhcccch----hHHHHHHHhCCceEEEEEEEEeccccccccccccccccccccC
Confidence 9999999998874433 355555542222222 34444443321 1445555544331
Q ss_pred -----------------CCHHHHHHHHHHHHHcCCcEEEee
Q 017179 287 -----------------ETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 287 -----------------ET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
.|.-++.+.++.+.+.++-.+-+.
T Consensus 200 ~~~~~~~y~v~~~gg~~~t~~~l~~~i~~~~~~G~GEIllt 240 (323)
T d1jvna1 200 NGEKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLN 240 (323)
T ss_dssp TCCCEEEEEEEETTTTEEEEEEHHHHHHHHHHTTCCEEEEC
T ss_pred CCccceeEEEEEcCCeEecCchHHHHhhhhhccCcceeEEE
Confidence 233378899999999999888774
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=82.37 E-value=1.8 Score=38.51 Aligned_cols=110 Identities=11% Similarity=0.211 Sum_probs=58.7
Q ss_pred HHHHHHHHHhhCCCcEEEEec---CCCCCChHHHHHHHHcCcccccccc-------c--chH-HHHHhhcCCCCCHHHHH
Q 017179 195 FAQTVRKLKELKPNMLIEALV---PDFRGNNGCVREVAKSGLNVFAHNI-------E--TVE-ELQSAVRDHRANFKQSL 261 (376)
Q Consensus 195 ~~elvr~Ik~~~p~i~Ie~l~---pd~~g~~e~l~~L~~aGld~i~h~l-------E--tv~-~l~~~vr~r~~t~e~~L 261 (376)
+.++++.+|+......|..++ |++..+.+.++.|.++|+|.+..++ | +.. ...+.+. .+.+.++.+
T Consensus 4 i~~~f~~lk~~~~~ali~y~t~G~P~~~~~~~~~~~l~~~GaDiiElGiPfSDP~aDGpvIq~a~~~al~-~G~~~~~~~ 82 (267)
T d1qopa_ 4 YENLFAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFA-AGVTPAQCF 82 (267)
T ss_dssp HHHHHHHHHHTTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHH-TTCCHHHHH
T ss_pred HHHHHHHHHHcCCceEEEEEeCcCCCHHHHHHHHHHHHHcCCCEEEECCCCCcccccchHHHhhhhhccc-ccchhhhhh
Confidence 445666666554444444433 2332235566777777777776653 2 112 2334455 577888888
Q ss_pred HHHHHHHHhCCCCceEEEeEEEecCCCHHH--HHHHHHHHHHcCCcEEEe
Q 017179 262 DVLMMAKDYVPAGTLTKTSIMLGCGETPDQ--VVSTMEKVRAAGVDVMTF 309 (376)
Q Consensus 262 ~vl~~ak~~~p~Gi~tkt~imvGlGET~ee--~~e~L~~Lrel~vd~v~~ 309 (376)
+.++.+++..+. . .=++.|.-..... +.+.++.+++.|++-+-+
T Consensus 83 ~~~~~~r~~~~~-~---pivlm~Y~N~i~~~G~~~f~~~~~~~Gv~Glii 128 (267)
T d1qopa_ 83 EMLAIIREKHPT-I---PIGLLMYANLVFNNGIDAFYARCEQVGVDSVLV 128 (267)
T ss_dssp HHHHHHHHHCSS-S---CEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEE
T ss_pred hhhhhhcccccc-c---ceEEEeeccchhhcCchHHHHHHHhcCCCceec
Confidence 888888875322 1 1122232111111 135566777777776655
|
| >d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=81.24 E-value=12 Score=32.06 Aligned_cols=166 Identities=17% Similarity=0.214 Sum_probs=100.6
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCC------hHHHHHHH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGN------NGCVREVA 229 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~------~e~l~~L~ 229 (376)
..+.+++.+.+++..+.|+.-|++. | .|...++.+.+.. ++.|...++.-.|. ....+...
T Consensus 32 ~~T~~~i~~lc~~A~~~~~~avcV~-------p-----~~v~~a~~~l~~s-~v~v~tVigFP~G~~~~~~k~~E~~~Ai 98 (234)
T d1n7ka_ 32 RATEEDVRNLVREASDYGFRCAVLT-------P-----VYTVKISGLAEKL-GVKLCSVIGFPLGQAPLEVKLVEAQTVL 98 (234)
T ss_dssp TCCHHHHHHHHHHHHHHTCSEEEEC-------H-----HHHHHHHHHHHHH-TCCEEEEESTTTCCSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCeEEEEC-------c-----HhHHHHHHHhhcC-CCceEEEEecCCCCCcHHHHHHHHHHHH
Confidence 3678999999999999999988863 1 2455555544432 47777666533442 33355666
Q ss_pred HcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEE
Q 017179 230 KSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMT 308 (376)
Q Consensus 230 ~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~ 308 (376)
+.|+|-+..-+.. .... ...|++..++++.++. .|..+| +|+=. --|++++....+...+.|.|+|-
T Consensus 99 ~~GAdEID~Vin~-----~~~~--~~~~~ev~~~~~~~~~---~g~~lK--VIlEt~~L~~~~i~~a~~~a~~aGadFVK 166 (234)
T d1n7ka_ 99 EAGATELDVVPHL-----SLGP--EAVYREVSGIVKLAKS---YGAVVK--VILEAPLWDDKTLSLLVDSSRRAGADIVK 166 (234)
T ss_dssp HHTCCEEEECCCG-----GGCH--HHHHHHHHHHHHHHHH---TTCEEE--EECCGGGSCHHHHHHHHHHHHHTTCSEEE
T ss_pred HcCCCeEEEEech-----hhhh--hhhHHHHHHHHHHHhc---cCceEE--EEEeccccchHHHHHHHHHHHHhhhhhee
Confidence 7787765432211 0111 1234555566666666 355555 44433 23789999999999999999997
Q ss_pred eecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhccchhHhhh
Q 017179 309 FGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSS 355 (376)
Q Consensus 309 ~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrss 355 (376)
-+.-+.+ .--+|+....++......+...-+|| =+|+-
T Consensus 167 TSTG~~~--------~gat~~~~~~l~~~~~~~~vgIKasG-GIrt~ 204 (234)
T d1n7ka_ 167 TSTGVYT--------KGGDPVTVFRLASLAKPLGMGVKASG-GIRSG 204 (234)
T ss_dssp SCCSSSC--------CCCSHHHHHHHHHHHGGGTCEEEEES-SCCSH
T ss_pred ecccccC--------CCCCHHHHHHHHHHhcCCCCcEEeeC-CcCCH
Confidence 6422211 01246667777766554445556787 56664
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=80.03 E-value=2.3 Score=39.68 Aligned_cols=133 Identities=17% Similarity=0.214 Sum_probs=82.4
Q ss_pred chhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccc
Q 017179 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (376)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h 238 (376)
+++-.+.+.++.+.|++.++|.+-+ +-..++.++++.|++.+|++.| ..+... +.+....|.++|+|.+-.
T Consensus 149 ~~~~~~ra~~L~~aG~D~ivID~Ah------G~s~~~~~~i~~ik~~~~~v~v--IaGNV~-T~e~a~~L~~~GaD~VkV 219 (388)
T d1eepa_ 149 DIDTIERVEELVKAHVDILVIDSAH------GHSTRIIELIKKIKTKYPNLDL--IAGNIV-TKEAALDLISVGADCLKV 219 (388)
T ss_dssp CTTHHHHHHHHHHTTCSEEEECCSC------CSSHHHHHHHHHHHHHCTTCEE--EEEEEC-SHHHHHHHHTTTCSEEEE
T ss_pred CHHHHHHHHHHHhhccceeeeeccc------cchHHHHHHHHHHHHHCCCCce--eecccc-CHHHHHHHHhcCCCeeee
Confidence 3455677889999999999996543 2267899999999999988765 222221 678889999999998855
Q ss_pred cc-----cchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 239 NI-----ETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 239 ~l-----Etv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
++ =|...+.- +. .-.+.-.+++.+.++. .++++-++- =--+.-|+...| ..|-|.|-+|-+|
T Consensus 220 GiGpGs~CtTr~~~G-vG--~pq~sai~~~~~~~~~---~~vpiIADG---Gi~~~Gdi~KAl----a~GAd~VMlG~~l 286 (388)
T d1eepa_ 220 GIGPGSICTTRIVAG-VG--VPQITAICDVYEACNN---TNICIIADG---GIRFSGDVVKAI----AAGADSVMIGNLF 286 (388)
T ss_dssp CSSCSTTSHHHHHHC-CC--CCHHHHHHHHHHHHTT---SSCEEEEES---CCCSHHHHHHHH----HHTCSEEEECHHH
T ss_pred ccccccccccccccc-cC--cchHHHHHHHHHHhcc---CCceEEecc---ccCcCCceeeeE----Eeccceeecchhh
Confidence 43 22222221 11 1123333344444433 234433321 126777887777 4677877777554
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