Citrus Sinensis ID: 017200
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 375 | 2.2.26 [Sep-21-2011] | |||||||
| B9H5L9 | 385 | Lipoyl synthase, mitochon | yes | no | 0.952 | 0.927 | 0.856 | 1e-171 | |
| B7FM45 | 378 | Lipoyl synthase, mitochon | N/A | no | 0.949 | 0.941 | 0.840 | 1e-168 | |
| Q3LSN5 | 376 | Lipoyl synthase 2, mitoch | N/A | no | 0.952 | 0.949 | 0.843 | 1e-164 | |
| Q3LSN4 | 376 | Lipoyl synthase 1, mitoch | N/A | no | 0.952 | 0.949 | 0.843 | 1e-163 | |
| A5CB81 | 393 | Lipoyl synthase, mitochon | yes | no | 0.88 | 0.839 | 0.861 | 1e-163 | |
| Q9ZWT1 | 374 | Lipoyl synthase, mitochon | yes | no | 0.938 | 0.941 | 0.817 | 1e-157 | |
| B9RW49 | 348 | Lipoyl synthase, mitochon | N/A | no | 0.88 | 0.948 | 0.857 | 1e-156 | |
| A2XU53 | 382 | Lipoyl synthase, mitochon | N/A | no | 0.832 | 0.816 | 0.836 | 1e-154 | |
| Q7XRF1 | 382 | Lipoyl synthase, mitochon | yes | no | 0.832 | 0.816 | 0.833 | 1e-153 | |
| C5Y9R0 | 386 | Lipoyl synthase, mitochon | N/A | no | 0.84 | 0.816 | 0.819 | 1e-153 |
| >sp|B9H5L9|LIAS_POPTR Lipoyl synthase, mitochondrial OS=Populus trichocarpa GN=LIP1 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 600 bits (1546), Expect = e-171, Method: Compositional matrix adjust.
Identities = 310/362 (85%), Positives = 329/362 (90%), Gaps = 5/362 (1%)
Query: 1 MRSRFTLALARTLTSRT-----RPFSSSAQTPPTEPPTKFPQTLAGLRARLASESPALSD 55
M+SRFT RTL S T R FSSS T+ P +F QTLAGLRARLA ESP LSD
Sbjct: 1 MQSRFTFLATRTLKSTTTKAKNRTFSSSTVESSTKQPPQFSQTLAGLRARLAVESPTLSD 60
Query: 56 FIDLQSNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPN 115
FI LQSN++YSVEVGTKKKPLPKPKWM+E+IPGG+KYVQIKKKLRELKLHTVCEEAKCPN
Sbjct: 61 FIHLQSNNTYSVEVGTKKKPLPKPKWMREAIPGGEKYVQIKKKLRELKLHTVCEEAKCPN 120
Query: 116 LGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLD 175
LGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSR PPPPDP+EPTNVAEAIASWGLD
Sbjct: 121 LGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRTPPPPDPNEPTNVAEAIASWGLD 180
Query: 176 YVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235
YVVITSVDRDDLADQGSGHFA+TV KLK LKPNMLIEALVPDFRG+ GCV +VAKSGL+V
Sbjct: 181 YVVITSVDRDDLADQGSGHFAETVHKLKTLKPNMLIEALVPDFRGDRGCVEKVAKSGLDV 240
Query: 236 FAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVST 295
FAHNIETVEELQS+VRDHRANFKQSLDVLMMAK+Y P GTLTKTSIMLGCGE P+QVV T
Sbjct: 241 FAHNIETVEELQSSVRDHRANFKQSLDVLMMAKEYAPPGTLTKTSIMLGCGEAPEQVVKT 300
Query: 296 MEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSS 355
MEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITP+AFE+Y+ LGMEMGFRYVASGPMVRSS
Sbjct: 301 MEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPDAFEKYKTLGMEMGFRYVASGPMVRSS 360
Query: 356 YK 357
YK
Sbjct: 361 YK 362
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Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. Populus trichocarpa (taxid: 3694) EC: 2EC: .EC: 8EC: .EC: 1EC: .EC: 8 |
| >sp|B7FM45|LIAS_MEDTR Lipoyl synthase, mitochondrial OS=Medicago truncatula GN=LIP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 592 bits (1527), Expect = e-168, Method: Compositional matrix adjust.
Identities = 301/358 (84%), Positives = 323/358 (90%), Gaps = 2/358 (0%)
Query: 1 MRSRFTLALARTLTSRTRPFS-SSAQTPPTEPPTKFPQTLAGLRARLASESPALSDFIDL 59
M SRF +A+ L S T+PFS ++A T T ++FPQ L LRARLA ESP+LSDFI L
Sbjct: 2 MYSRFR-TVAKNLKSTTKPFSFTTATTTTTVSSSEFPQNLTELRARLARESPSLSDFISL 60
Query: 60 QSNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGEC 119
+SN++YSVEVGTKK PLPKPKWMKESIPGG KYVQIKKKLRELKLHTVCEEAKCPN+GEC
Sbjct: 61 KSNNAYSVEVGTKKNPLPKPKWMKESIPGGWKYVQIKKKLRELKLHTVCEEAKCPNMGEC 120
Query: 120 WSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVI 179
WSGGETGTATATIMILGDTCTRGCRFCNVKTSR PPPPDPDEPTNVAEAIASWGLDYVVI
Sbjct: 121 WSGGETGTATATIMILGDTCTRGCRFCNVKTSRTPPPPDPDEPTNVAEAIASWGLDYVVI 180
Query: 180 TSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239
TSV RDDL DQGS HF +TV+KLK LKP++LIEALVPDFRGN CV +V+KSGL+VFAHN
Sbjct: 181 TSVGRDDLPDQGSSHFTETVQKLKILKPSILIEALVPDFRGNAECVEKVSKSGLDVFAHN 240
Query: 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKV 299
IETVEELQSAVRDHRANF QSLDVL MAKDY PAGTLTKTSIMLGCGETPDQ+V TMEKV
Sbjct: 241 IETVEELQSAVRDHRANFNQSLDVLRMAKDYAPAGTLTKTSIMLGCGETPDQIVKTMEKV 300
Query: 300 RAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYK 357
RAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFE+Y+ LGMEMGFRYVASGPMVRSSYK
Sbjct: 301 RAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFEKYQTLGMEMGFRYVASGPMVRSSYK 358
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Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. Medicago truncatula (taxid: 3880) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q3LSN5|LIAS2_PEA Lipoyl synthase 2, mitochondrial OS=Pisum sativum GN=LIP1-2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 577 bits (1486), Expect = e-164, Method: Compositional matrix adjust.
Identities = 301/357 (84%), Positives = 321/357 (89%)
Query: 1 MRSRFTLALARTLTSRTRPFSSSAQTPPTEPPTKFPQTLAGLRARLASESPALSDFIDLQ 60
M SRF + R SSS T T P++ Q LA LRARLA ESP+LSDFI L+
Sbjct: 2 MYSRFRTVAGNLNCAAKRLSSSSTTTTTTSAPSELQQNLAALRARLAMESPSLSDFISLK 61
Query: 61 SNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECW 120
S+++YSVEVGTKKKPLPKPKWMKESIPGG+KYVQIKKKLRELKLHTVCEEAKCPNLGECW
Sbjct: 62 SDNAYSVEVGTKKKPLPKPKWMKESIPGGEKYVQIKKKLRELKLHTVCEEAKCPNLGECW 121
Query: 121 SGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVIT 180
SGGETGTATATIMILGDTCTRGCRFCNVKTSR PPPPDPDEPTNVAEAIASWGLDYVVIT
Sbjct: 122 SGGETGTATATIMILGDTCTRGCRFCNVKTSRTPPPPDPDEPTNVAEAIASWGLDYVVIT 181
Query: 181 SVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNI 240
SVDRDDL DQGSGHF +TV+KLK LKP+MLIEALVPDFRGN CV +V+KSGL+VFAHNI
Sbjct: 182 SVDRDDLPDQGSGHFTETVQKLKALKPSMLIEALVPDFRGNAECVEKVSKSGLDVFAHNI 241
Query: 241 ETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVR 300
ETVEELQSAVRDHRANFKQSLDVLMMAK+Y PAGTLTKTSIMLGCGETPDQ+V TMEKVR
Sbjct: 242 ETVEELQSAVRDHRANFKQSLDVLMMAKEYAPAGTLTKTSIMLGCGETPDQIVKTMEKVR 301
Query: 301 AAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYK 357
AAGVDVMTFGQ+MRPSKRHMPVSEYITPEAFE+Y+ LGMEMGFRYVASGPMVRSSYK
Sbjct: 302 AAGVDVMTFGQHMRPSKRHMPVSEYITPEAFEKYQTLGMEMGFRYVASGPMVRSSYK 358
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Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. Pisum sativum (taxid: 3888) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q3LSN4|LIAS1_PEA Lipoyl synthase 1, mitochondrial OS=Pisum sativum GN=LIP1-1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 576 bits (1484), Expect = e-163, Method: Compositional matrix adjust.
Identities = 301/357 (84%), Positives = 320/357 (89%)
Query: 1 MRSRFTLALARTLTSRTRPFSSSAQTPPTEPPTKFPQTLAGLRARLASESPALSDFIDLQ 60
M SRF + R SSS T T P++ Q LA LRARLA ESP+LSDFI L+
Sbjct: 2 MYSRFRTVAGNLNCAAKRLSSSSTTTTTTSAPSELQQNLAALRARLAMESPSLSDFISLK 61
Query: 61 SNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECW 120
S+++YSVEVGTKKKPLPKPKWMKESIPGG+KYVQIKKKLRELKLHTVCEEAKCPNLGECW
Sbjct: 62 SDNAYSVEVGTKKKPLPKPKWMKESIPGGEKYVQIKKKLRELKLHTVCEEAKCPNLGECW 121
Query: 121 SGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVIT 180
SGGETGTATATIMILGDTCTRGCRFCNVKTSR PPPPDPDEPTNVAEAIASWGLDYVVIT
Sbjct: 122 SGGETGTATATIMILGDTCTRGCRFCNVKTSRTPPPPDPDEPTNVAEAIASWGLDYVVIT 181
Query: 181 SVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNI 240
SVDRDDL DQGSGHF +TV+KLK LKP+ LIEALVPDFRGN CV +V+KSGL+VFAHNI
Sbjct: 182 SVDRDDLPDQGSGHFTETVQKLKALKPSTLIEALVPDFRGNAECVEKVSKSGLDVFAHNI 241
Query: 241 ETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVR 300
ETVEELQSAVRDHRANFKQSLDVLMMAK+Y PAGTLTKTSIMLGCGETPDQ+V TMEKVR
Sbjct: 242 ETVEELQSAVRDHRANFKQSLDVLMMAKEYAPAGTLTKTSIMLGCGETPDQIVKTMEKVR 301
Query: 301 AAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYK 357
AAGVDVMTFGQYMRPSKRHMPVSEYITPEAFE+Y+ LGMEMGFRYVASGPMVRSSYK
Sbjct: 302 AAGVDVMTFGQYMRPSKRHMPVSEYITPEAFEKYQTLGMEMGFRYVASGPMVRSSYK 358
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Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. Pisum sativum (taxid: 3888) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|A5CB81|LIAS_VITVI Lipoyl synthase, mitochondrial OS=Vitis vinifera GN=LIP1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 574 bits (1480), Expect = e-163, Method: Compositional matrix adjust.
Identities = 286/332 (86%), Positives = 307/332 (92%), Gaps = 2/332 (0%)
Query: 26 TPPTEPPTKFPQTLAGLRARLASESPALSDFIDLQSNSSYSVEVGTKKKPLPKPKWMKES 85
+PPT P + PQTLA LR RLA ESP+LSDF+ LQ++ YSVEVGTKKKPL KPKWMKES
Sbjct: 35 SPPTNP--EPPQTLASLRHRLAVESPSLSDFVRLQTSDDYSVEVGTKKKPLSKPKWMKES 92
Query: 86 IPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRF 145
IPGG KY QIKKKLR+L LHTVCEEA+CPN+GECWSGGETGTATATIMILGDTCTRGCRF
Sbjct: 93 IPGGAKYTQIKKKLRQLNLHTVCEEARCPNMGECWSGGETGTATATIMILGDTCTRGCRF 152
Query: 146 CNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205
CNVKTSR PPPPDPDEP+ VAEAIASWGLDYVVITSVDRDDL DQGSGHFA+TV+KLK L
Sbjct: 153 CNVKTSRTPPPPDPDEPSKVAEAIASWGLDYVVITSVDRDDLPDQGSGHFAETVQKLKIL 212
Query: 206 KPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLM 265
KPNMLIEALVPDFRG+ GCV +V+KSGL+VFAHNIETVEELQSAVRDHRANFKQSL+VL
Sbjct: 213 KPNMLIEALVPDFRGDPGCVEKVSKSGLDVFAHNIETVEELQSAVRDHRANFKQSLEVLK 272
Query: 266 MAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEY 325
+AK+Y AGTLTKTSIMLGCGETPDQVV TMEKVRAAGVDVMTFGQYMRPSKRHMPVSEY
Sbjct: 273 LAKEYADAGTLTKTSIMLGCGETPDQVVRTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEY 332
Query: 326 ITPEAFERYRALGMEMGFRYVASGPMVRSSYK 357
ITPEAFE+YR LGM+MGFRYVASGPMVRSSYK
Sbjct: 333 ITPEAFEKYRILGMDMGFRYVASGPMVRSSYK 364
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Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. Vitis vinifera (taxid: 29760) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q9ZWT1|LIAS_ARATH Lipoyl synthase, mitochondrial OS=Arabidopsis thaliana GN=LIP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 553 bits (1426), Expect = e-157, Method: Compositional matrix adjust.
Identities = 292/357 (81%), Positives = 318/357 (89%), Gaps = 5/357 (1%)
Query: 1 MRSRFTLALARTLTSRTRPFSSSAQTPPTEPPTKFPQTLAGLRARLASESPALSDFIDLQ 60
M SR L L R L +R FSSS+ P T+ P++L LRARLA+ESP+L+DFI
Sbjct: 1 MHSRSAL-LYRFLRPASRCFSSSSAVTPV-TVTQSPKSLEALRARLANESPSLTDFIH-- 56
Query: 61 SNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECW 120
+YSVEVGTKKKPLPKPKWMKESIPGG++YVQIKKKLR+LKLHTVCEEAKCPNLGECW
Sbjct: 57 -GDTYSVEVGTKKKPLPKPKWMKESIPGGERYVQIKKKLRDLKLHTVCEEAKCPNLGECW 115
Query: 121 SGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVIT 180
SGGETGTATATIMILGDTCTRGCRFCNVKTSR PPPPDP+EP NVAEAIASWG+DYVVIT
Sbjct: 116 SGGETGTATATIMILGDTCTRGCRFCNVKTSRTPPPPDPNEPNNVAEAIASWGVDYVVIT 175
Query: 181 SVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNI 240
SVDRDDL DQGSGHFA+TV++LK LKP MLIEALVPDFRG+ GCV +V+KSGL+V AHNI
Sbjct: 176 SVDRDDLPDQGSGHFAETVQRLKFLKPEMLIEALVPDFRGDGGCVEKVSKSGLDVLAHNI 235
Query: 241 ETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVR 300
ETVEELQS VRDHRANFKQSLDVL MAK+Y PAGTLTKTS+MLGCGETPDQVV TMEKVR
Sbjct: 236 ETVEELQSFVRDHRANFKQSLDVLRMAKEYAPAGTLTKTSVMLGCGETPDQVVKTMEKVR 295
Query: 301 AAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYK 357
AAGVDVMTFGQYMRPSKRHMPV+EY+TP+AFERYR LGMEMGFRYVASGPMVRSSYK
Sbjct: 296 AAGVDVMTFGQYMRPSKRHMPVAEYVTPDAFERYRLLGMEMGFRYVASGPMVRSSYK 352
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Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|B9RW49|LIAS_RICCO Lipoyl synthase, mitochondrial OS=Ricinus communis GN=LIP1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 551 bits (1421), Expect = e-156, Method: Compositional matrix adjust.
Identities = 288/336 (85%), Positives = 313/336 (93%), Gaps = 6/336 (1%)
Query: 1 MRSRFTLALARTL-TSRTRPFSSSAQTPPTEPPTKFPQTLAGLRARLASESPALSDFIDL 59
+SRFT+ L RTL +S++R FSS+ + PT+P +FPQTLAGLRARLA+ESP+LS+F DL
Sbjct: 2 FQSRFTI-LIRTLNSSKSRHFSSTIE--PTKP--QFPQTLAGLRARLAAESPSLSEFSDL 56
Query: 60 QSNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGEC 119
QSN+SYSVEVGTKKKPLPKPKWM+E+IPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGEC
Sbjct: 57 QSNNSYSVEVGTKKKPLPKPKWMREAIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGEC 116
Query: 120 WSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVI 179
WSGGETGTATATIMILGDTCTRGCRFCNVKTSR PPPPDPDEP NVAEAIASWGLDYVVI
Sbjct: 117 WSGGETGTATATIMILGDTCTRGCRFCNVKTSRTPPPPDPDEPANVAEAIASWGLDYVVI 176
Query: 180 TSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239
TSVDRDDL DQGS HFAQTV+KLK LKP+MLIEALVPDFRG+ GCV VAKSGL+VFAHN
Sbjct: 177 TSVDRDDLPDQGSNHFAQTVQKLKALKPHMLIEALVPDFRGDPGCVENVAKSGLDVFAHN 236
Query: 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKV 299
IETVE+LQS +RDHRANFKQSLDVLMMAKD+ P GTLTKTSIMLGCGETP+QVV TMEKV
Sbjct: 237 IETVEDLQSVIRDHRANFKQSLDVLMMAKDHAPKGTLTKTSIMLGCGETPEQVVKTMEKV 296
Query: 300 RAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYR 335
RAAGVDVMTFGQYMRPSKRHMPVSEY+TPEAFE+YR
Sbjct: 297 RAAGVDVMTFGQYMRPSKRHMPVSEYVTPEAFEQYR 332
|
Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. Ricinus communis (taxid: 3988) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|A2XU53|LIAS_ORYSI Lipoyl synthase, mitochondrial OS=Oryza sativa subsp. indica GN=LIP1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 544 bits (1402), Expect = e-154, Method: Compositional matrix adjust.
Identities = 267/319 (83%), Positives = 292/319 (91%), Gaps = 7/319 (2%)
Query: 39 LAGLRARLASESPALSDFIDLQSNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKK 98
LA LR RL +++P+L DF +YSVEVGT+KKPLPKPKWMKE+IPGG KY IK K
Sbjct: 50 LAELRQRLQADAPSLGDF-------TYSVEVGTRKKPLPKPKWMKETIPGGAKYAGIKAK 102
Query: 99 LRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPD 158
LRELKLHTVCEEA+CPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSR PPPPD
Sbjct: 103 LRELKLHTVCEEARCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRTPPPPD 162
Query: 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF 218
PDEP+NVA+AIASWGL+Y+VITSVDRDDL DQGSGHFA+TV+KLK LKP MLIEALVPDF
Sbjct: 163 PDEPSNVAQAIASWGLEYIVITSVDRDDLPDQGSGHFAETVQKLKVLKPEMLIEALVPDF 222
Query: 219 RGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTK 278
RG+ CV +VA SGL+VFAHNIETVEELQ VRDHRANFKQS+DVL +AK+Y PAGTLTK
Sbjct: 223 RGDPACVEKVATSGLHVFAHNIETVEELQRNVRDHRANFKQSIDVLKLAKEYAPAGTLTK 282
Query: 279 TSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALG 338
TSIMLGCGETPDQV+STMEKVRAAGVDVMTFGQYMRPSKRHMPVSEY+TPEAFERYR+LG
Sbjct: 283 TSIMLGCGETPDQVISTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYVTPEAFERYRSLG 342
Query: 339 MEMGFRYVASGPMVRSSYK 357
++MGFRYVASGPMVRSSYK
Sbjct: 343 VDMGFRYVASGPMVRSSYK 361
|
Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. Oryza sativa subsp. indica (taxid: 39946) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q7XRF1|LIAS_ORYSJ Lipoyl synthase, mitochondrial OS=Oryza sativa subsp. japonica GN=LIP1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 542 bits (1396), Expect = e-153, Method: Compositional matrix adjust.
Identities = 266/319 (83%), Positives = 291/319 (91%), Gaps = 7/319 (2%)
Query: 39 LAGLRARLASESPALSDFIDLQSNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKK 98
LA LR RL +++P+L DF +YSVEVGT+KKPLPKPKWMKE+IPGG KY IK K
Sbjct: 50 LAELRQRLQADAPSLGDF-------TYSVEVGTRKKPLPKPKWMKETIPGGAKYAGIKAK 102
Query: 99 LRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPD 158
LRELKLHTVCEEA+CPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSR PPPPD
Sbjct: 103 LRELKLHTVCEEARCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRTPPPPD 162
Query: 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF 218
PDEP+NVA+AIASWGL+Y+VITSVDRDDL DQGSGHFA+TV+KLK LKP MLIEALVPDF
Sbjct: 163 PDEPSNVAQAIASWGLEYIVITSVDRDDLPDQGSGHFAETVQKLKVLKPEMLIEALVPDF 222
Query: 219 RGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTK 278
RG+ CV +VA SGL+VFAHNIETVEELQ VRDHRANFKQS+DVL +AK+Y PAGTLTK
Sbjct: 223 RGDPACVEKVATSGLHVFAHNIETVEELQRNVRDHRANFKQSIDVLKLAKEYAPAGTLTK 282
Query: 279 TSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALG 338
TSIMLGCGETPDQV+ST EKVRAAGVDVMTFGQYMRPSKRHMPVSEY+TPEAFERYR+LG
Sbjct: 283 TSIMLGCGETPDQVISTTEKVRAAGVDVMTFGQYMRPSKRHMPVSEYVTPEAFERYRSLG 342
Query: 339 MEMGFRYVASGPMVRSSYK 357
++MGFRYVASGPMVRSSYK
Sbjct: 343 VDMGFRYVASGPMVRSSYK 361
|
Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|C5Y9R0|LIAS_SORBI Lipoyl synthase, mitochondrial OS=Sorghum bicolor GN=LIP1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 540 bits (1391), Expect = e-153, Method: Compositional matrix adjust.
Identities = 264/322 (81%), Positives = 292/322 (90%), Gaps = 7/322 (2%)
Query: 36 PQTLAGLRARLASESPALSDFIDLQSNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQI 95
P LA LR RL +++P+L DF +YSVEVGT+++PLPKPKWMKE++PGG KY I
Sbjct: 48 PGRLAELRRRLQADAPSLGDF-------AYSVEVGTRQRPLPKPKWMKETVPGGAKYAAI 100
Query: 96 KKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPP 155
K KLRELKLHTVCEEA+CPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSR PP
Sbjct: 101 KAKLRELKLHTVCEEARCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRTPP 160
Query: 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALV 215
PPDPDEP+NVA+AIASWGL+Y+VITSVDRDDL DQGSGHFA+TV+KLK LKP MLIEALV
Sbjct: 161 PPDPDEPSNVAQAIASWGLEYIVITSVDRDDLPDQGSGHFAETVQKLKALKPEMLIEALV 220
Query: 216 PDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGT 275
PDFRG+ CV +VA SGL+VFAHNIETVEELQ VRD+RANFKQS+DVL MAK+Y P GT
Sbjct: 221 PDFRGDPSCVEKVATSGLHVFAHNIETVEELQRNVRDYRANFKQSIDVLKMAKEYAPPGT 280
Query: 276 LTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYR 335
LTKTSIMLGCGETPDQV+STMEKVRAAGVDV+TFGQYMRPSKRHMPVSEY+TPEAFE+YR
Sbjct: 281 LTKTSIMLGCGETPDQVISTMEKVRAAGVDVITFGQYMRPSKRHMPVSEYVTPEAFEKYR 340
Query: 336 ALGMEMGFRYVASGPMVRSSYK 357
ALG+EMGFRYVASGPMVRSSYK
Sbjct: 341 ALGVEMGFRYVASGPMVRSSYK 362
|
Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. Sorghum bicolor (taxid: 4558) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 375 | ||||||
| 118489021 | 385 | unknown [Populus trichocarpa x Populus d | 0.952 | 0.927 | 0.856 | 1e-170 | |
| 224081274 | 385 | predicted protein [Populus trichocarpa] | 0.952 | 0.927 | 0.856 | 1e-169 | |
| 388520169 | 378 | unknown [Medicago truncatula] | 0.949 | 0.941 | 0.840 | 1e-167 | |
| 308191435 | 378 | RecName: Full=Lipoyl synthase, mitochond | 0.949 | 0.941 | 0.840 | 1e-167 | |
| 388511141 | 378 | unknown [Medicago truncatula] | 0.949 | 0.941 | 0.840 | 1e-166 | |
| 356549944 | 378 | PREDICTED: lipoyl synthase 2, mitochondr | 0.949 | 0.941 | 0.840 | 1e-165 | |
| 356543805 | 382 | PREDICTED: lipoyl synthase 2, mitochondr | 0.949 | 0.931 | 0.843 | 1e-165 | |
| 122216661 | 376 | RecName: Full=Lipoyl synthase 2, mitocho | 0.952 | 0.949 | 0.843 | 1e-162 | |
| 122216660 | 376 | RecName: Full=Lipoyl synthase 1, mitocho | 0.952 | 0.949 | 0.843 | 1e-162 | |
| 359496821 | 393 | PREDICTED: LOW QUALITY PROTEIN: lipoyl s | 0.88 | 0.839 | 0.861 | 1e-161 |
| >gi|118489021|gb|ABK96318.1| unknown [Populus trichocarpa x Populus deltoides] | Back alignment and taxonomy information |
|---|
Score = 603 bits (1554), Expect = e-170, Method: Compositional matrix adjust.
Identities = 310/362 (85%), Positives = 328/362 (90%), Gaps = 5/362 (1%)
Query: 1 MRSRFTLALARTLTSRT-----RPFSSSAQTPPTEPPTKFPQTLAGLRARLASESPALSD 55
M+SRFT RTL S T R FSSS T+ P +F QTLAGLRARLA ESP LSD
Sbjct: 1 MQSRFTSLATRTLKSTTTKAKNRTFSSSTVESSTKQPPQFSQTLAGLRARLAVESPTLSD 60
Query: 56 FIDLQSNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPN 115
FI LQSN++YSVEVGTKKKPLPKPKWM+E+IPGG+KYV IKKKLRELKLHTVCEEAKCPN
Sbjct: 61 FIHLQSNNTYSVEVGTKKKPLPKPKWMREAIPGGEKYVHIKKKLRELKLHTVCEEAKCPN 120
Query: 116 LGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLD 175
LGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSR PPPPDP+EPTNVAEAIASWGLD
Sbjct: 121 LGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRKPPPPDPNEPTNVAEAIASWGLD 180
Query: 176 YVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235
YVVITSVDRDDLADQGSGHFA+TV KLK LKPNMLIEALVPDFRG+ GCV +VAKSGL+V
Sbjct: 181 YVVITSVDRDDLADQGSGHFAETVHKLKTLKPNMLIEALVPDFRGDRGCVEKVAKSGLDV 240
Query: 236 FAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVST 295
FAHNIETVEELQS+VRDHRANFKQSLDVLMMAK+Y P GTLTKTSIMLGCGE P+QVV T
Sbjct: 241 FAHNIETVEELQSSVRDHRANFKQSLDVLMMAKEYAPPGTLTKTSIMLGCGEAPEQVVKT 300
Query: 296 MEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSS 355
MEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITP+AFE+YR LGMEMGFRYVASGPMVRSS
Sbjct: 301 MEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPDAFEKYRTLGMEMGFRYVASGPMVRSS 360
Query: 356 YK 357
YK
Sbjct: 361 YK 362
|
Source: Populus trichocarpa x Populus deltoides Species: Populus trichocarpa x Populus deltoides Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224081274|ref|XP_002306361.1| predicted protein [Populus trichocarpa] gi|308191438|sp|B9H5L9.1|LIAS_POPTR RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic acid synthase; Flags: Precursor gi|222855810|gb|EEE93357.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust.
Identities = 310/362 (85%), Positives = 329/362 (90%), Gaps = 5/362 (1%)
Query: 1 MRSRFTLALARTLTSRT-----RPFSSSAQTPPTEPPTKFPQTLAGLRARLASESPALSD 55
M+SRFT RTL S T R FSSS T+ P +F QTLAGLRARLA ESP LSD
Sbjct: 1 MQSRFTFLATRTLKSTTTKAKNRTFSSSTVESSTKQPPQFSQTLAGLRARLAVESPTLSD 60
Query: 56 FIDLQSNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPN 115
FI LQSN++YSVEVGTKKKPLPKPKWM+E+IPGG+KYVQIKKKLRELKLHTVCEEAKCPN
Sbjct: 61 FIHLQSNNTYSVEVGTKKKPLPKPKWMREAIPGGEKYVQIKKKLRELKLHTVCEEAKCPN 120
Query: 116 LGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLD 175
LGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSR PPPPDP+EPTNVAEAIASWGLD
Sbjct: 121 LGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRTPPPPDPNEPTNVAEAIASWGLD 180
Query: 176 YVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235
YVVITSVDRDDLADQGSGHFA+TV KLK LKPNMLIEALVPDFRG+ GCV +VAKSGL+V
Sbjct: 181 YVVITSVDRDDLADQGSGHFAETVHKLKTLKPNMLIEALVPDFRGDRGCVEKVAKSGLDV 240
Query: 236 FAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVST 295
FAHNIETVEELQS+VRDHRANFKQSLDVLMMAK+Y P GTLTKTSIMLGCGE P+QVV T
Sbjct: 241 FAHNIETVEELQSSVRDHRANFKQSLDVLMMAKEYAPPGTLTKTSIMLGCGEAPEQVVKT 300
Query: 296 MEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSS 355
MEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITP+AFE+Y+ LGMEMGFRYVASGPMVRSS
Sbjct: 301 MEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPDAFEKYKTLGMEMGFRYVASGPMVRSS 360
Query: 356 YK 357
YK
Sbjct: 361 YK 362
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388520169|gb|AFK48146.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust.
Identities = 301/358 (84%), Positives = 325/358 (90%), Gaps = 2/358 (0%)
Query: 1 MRSRFTLALARTLTSRTRPFS-SSAQTPPTEPPTKFPQTLAGLRARLASESPALSDFIDL 59
M SRF +A+ L S ++PFS ++A T T ++FPQ L LRARLA ESP+LSDFI L
Sbjct: 2 MYSRFR-TVAKNLKSTSKPFSFTTATTTTTVSSSEFPQNLTELRARLARESPSLSDFISL 60
Query: 60 QSNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGEC 119
+SN++YSVEVGTKK PLPKPKWMKESIPGG KYVQIKKKLRELKLHTVCEEAKCPN+GEC
Sbjct: 61 KSNNAYSVEVGTKKNPLPKPKWMKESIPGGWKYVQIKKKLRELKLHTVCEEAKCPNMGEC 120
Query: 120 WSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVI 179
WSGGETGTATATIMILGDTCTRGCRFCNVKTSR PPPPDPDEPTNVAEAIASWGLDYVVI
Sbjct: 121 WSGGETGTATATIMILGDTCTRGCRFCNVKTSRTPPPPDPDEPTNVAEAIASWGLDYVVI 180
Query: 180 TSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239
TSVDRDDL DQGS HF +TV+KLK LKP++LIEALVPDFRGN CV +V+KSGL+VFAH+
Sbjct: 181 TSVDRDDLPDQGSSHFTETVQKLKILKPSILIEALVPDFRGNAECVEKVSKSGLDVFAHS 240
Query: 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKV 299
IETVEELQSAVRDHRANF QSLDVL MAKDY PAGTLTKTSIMLGCGETPDQ+V TMEKV
Sbjct: 241 IETVEELQSAVRDHRANFNQSLDVLRMAKDYAPAGTLTKTSIMLGCGETPDQIVKTMEKV 300
Query: 300 RAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYK 357
RAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFE+Y+ALGMEMGFRYVASGPMVRSSYK
Sbjct: 301 RAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFEKYQALGMEMGFRYVASGPMVRSSYK 358
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|308191435|sp|B7FM45.1|LIAS_MEDTR RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic acid synthase; Flags: Precursor gi|217074936|gb|ACJ85828.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 592 bits (1527), Expect = e-167, Method: Compositional matrix adjust.
Identities = 301/358 (84%), Positives = 323/358 (90%), Gaps = 2/358 (0%)
Query: 1 MRSRFTLALARTLTSRTRPFS-SSAQTPPTEPPTKFPQTLAGLRARLASESPALSDFIDL 59
M SRF +A+ L S T+PFS ++A T T ++FPQ L LRARLA ESP+LSDFI L
Sbjct: 2 MYSRFR-TVAKNLKSTTKPFSFTTATTTTTVSSSEFPQNLTELRARLARESPSLSDFISL 60
Query: 60 QSNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGEC 119
+SN++YSVEVGTKK PLPKPKWMKESIPGG KYVQIKKKLRELKLHTVCEEAKCPN+GEC
Sbjct: 61 KSNNAYSVEVGTKKNPLPKPKWMKESIPGGWKYVQIKKKLRELKLHTVCEEAKCPNMGEC 120
Query: 120 WSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVI 179
WSGGETGTATATIMILGDTCTRGCRFCNVKTSR PPPPDPDEPTNVAEAIASWGLDYVVI
Sbjct: 121 WSGGETGTATATIMILGDTCTRGCRFCNVKTSRTPPPPDPDEPTNVAEAIASWGLDYVVI 180
Query: 180 TSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239
TSV RDDL DQGS HF +TV+KLK LKP++LIEALVPDFRGN CV +V+KSGL+VFAHN
Sbjct: 181 TSVGRDDLPDQGSSHFTETVQKLKILKPSILIEALVPDFRGNAECVEKVSKSGLDVFAHN 240
Query: 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKV 299
IETVEELQSAVRDHRANF QSLDVL MAKDY PAGTLTKTSIMLGCGETPDQ+V TMEKV
Sbjct: 241 IETVEELQSAVRDHRANFNQSLDVLRMAKDYAPAGTLTKTSIMLGCGETPDQIVKTMEKV 300
Query: 300 RAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYK 357
RAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFE+Y+ LGMEMGFRYVASGPMVRSSYK
Sbjct: 301 RAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFEKYQTLGMEMGFRYVASGPMVRSSYK 358
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388511141|gb|AFK43632.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust.
Identities = 301/358 (84%), Positives = 323/358 (90%), Gaps = 2/358 (0%)
Query: 1 MRSRFTLALARTLTSRTRPFS-SSAQTPPTEPPTKFPQTLAGLRARLASESPALSDFIDL 59
M SRF +A+ L S T+PFS ++A T T ++FPQ L LRARLA ESP+LSDFI L
Sbjct: 2 MYSRFR-TVAKNLKSTTKPFSFTTATTTTTVSSSEFPQNLTELRARLARESPSLSDFISL 60
Query: 60 QSNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGEC 119
+SN++YSVEVGTKK PLPKPKWMKESIPGG KYVQIKKKLRELKLHTVCEEAKCPN+GEC
Sbjct: 61 KSNNAYSVEVGTKKNPLPKPKWMKESIPGGWKYVQIKKKLRELKLHTVCEEAKCPNMGEC 120
Query: 120 WSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVI 179
WSGGETGTATATIMILGDTCTRGCRFCNVKTSR PPPPDPDEPTNVAEAIASWGLDYVVI
Sbjct: 121 WSGGETGTATATIMILGDTCTRGCRFCNVKTSRTPPPPDPDEPTNVAEAIASWGLDYVVI 180
Query: 180 TSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239
TSV RDDL DQGS HF +TV+KLK LKP++LIEALVPDFRGN CV +V+KSGL+VFAHN
Sbjct: 181 TSVGRDDLPDQGSSHFTETVQKLKILKPSILIEALVPDFRGNAECVEKVSKSGLDVFAHN 240
Query: 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKV 299
IETVEELQSAVRDHRANF QSLDVL MAKDY PAGTLTKTSIMLGCGETPDQ+V TMEKV
Sbjct: 241 IETVEELQSAVRDHRANFNQSLDVLRMAKDYAPAGTLTKTSIMLGCGETPDQIVKTMEKV 300
Query: 300 RAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYK 357
RAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFE+Y+ LGMEMGFRYVASGPMVRSSYK
Sbjct: 301 RAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFEKYQTLGMEMGFRYVASGPMVRSSYK 358
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549944|ref|XP_003543350.1| PREDICTED: lipoyl synthase 2, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust.
Identities = 300/357 (84%), Positives = 326/357 (91%), Gaps = 1/357 (0%)
Query: 1 MRSRFTLALARTLTSRTRPFSSSAQTPPTEPPTKFPQTLAGLRARLASESPALSDFIDLQ 60
M SR ++A + R F SS+ P P++ PQTLAGLRARLA ESP+LSDF+ L+
Sbjct: 3 MHSRIR-SVAGNIKCAARLFCSSSTITPAAAPSQLPQTLAGLRARLAEESPSLSDFVALK 61
Query: 61 SNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECW 120
S+S+YSVEVGTKKKPLPKPKWMKE++PGG+KYVQIKKKLRELKLHTVCEEAKCPNLGECW
Sbjct: 62 SDSAYSVEVGTKKKPLPKPKWMKEAVPGGEKYVQIKKKLRELKLHTVCEEAKCPNLGECW 121
Query: 121 SGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVIT 180
SGGETGTATATIMILGDTCTRGCRFCNVKTSR PPPPDPDEPTNVAEAIASWGLDYVVIT
Sbjct: 122 SGGETGTATATIMILGDTCTRGCRFCNVKTSRTPPPPDPDEPTNVAEAIASWGLDYVVIT 181
Query: 181 SVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNI 240
SVDRDDL DQGSGHF++TV+KLK LKPNMLIEALVPDFRG+ CV +VAKSGL+VFAHNI
Sbjct: 182 SVDRDDLPDQGSGHFSETVQKLKALKPNMLIEALVPDFRGDADCVEKVAKSGLDVFAHNI 241
Query: 241 ETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVR 300
ETVEELQ+ VRDHRANFKQSLDVLMMAK+Y PAGTLTKTSIMLGCGETPDQVV TMEKVR
Sbjct: 242 ETVEELQNFVRDHRANFKQSLDVLMMAKEYAPAGTLTKTSIMLGCGETPDQVVKTMEKVR 301
Query: 301 AAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYK 357
AAGVDVMTFGQYMRPSKRHMPVSEY+TPEAF++Y+ LGMEMGFRYVASGPMVRSSYK
Sbjct: 302 AAGVDVMTFGQYMRPSKRHMPVSEYVTPEAFDKYQKLGMEMGFRYVASGPMVRSSYK 358
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356543805|ref|XP_003540350.1| PREDICTED: lipoyl synthase 2, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust.
Identities = 301/357 (84%), Positives = 324/357 (90%), Gaps = 1/357 (0%)
Query: 1 MRSRFTLALARTLTSRTRPFSSSAQTPPTEPPTKFPQTLAGLRARLASESPALSDFIDLQ 60
M SR ++A + R F SS+ T P P +FPQTLAGLRARLA ESP+LSDF+ L+
Sbjct: 3 MHSRVR-SVAGNIKCAARLFCSSSTTTPPAAPLQFPQTLAGLRARLAEESPSLSDFLALK 61
Query: 61 SNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECW 120
S S+YSVEVGTKKKPLPKPKWMKE++PGG+KYVQIKKKLRELKLHTVCEEA+CPNLGECW
Sbjct: 62 SESAYSVEVGTKKKPLPKPKWMKEAVPGGEKYVQIKKKLRELKLHTVCEEARCPNLGECW 121
Query: 121 SGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVIT 180
SGGETGTATATIMILGDTCTRGCRFCNVKTSR PPPPDPDEPTNVAEAIASWGLDYVVIT
Sbjct: 122 SGGETGTATATIMILGDTCTRGCRFCNVKTSRTPPPPDPDEPTNVAEAIASWGLDYVVIT 181
Query: 181 SVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNI 240
SVDRDDL DQGSGHF +TV+KLK LKPNMLIEALVPDFRG+ CV +VAKSGL+VFAHNI
Sbjct: 182 SVDRDDLPDQGSGHFTETVQKLKALKPNMLIEALVPDFRGDADCVEKVAKSGLDVFAHNI 241
Query: 241 ETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVR 300
ETVEELQS VRDHRANFKQSLDVLMMAK+ PAGTLTKTSIMLGCGETPDQVV TMEKVR
Sbjct: 242 ETVEELQSVVRDHRANFKQSLDVLMMAKENAPAGTLTKTSIMLGCGETPDQVVKTMEKVR 301
Query: 301 AAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYK 357
AAGVDVMTFGQYMRPSKRHMPVSEY+TPEAF++Y+ LGMEMGFRYVASGPMVRSSYK
Sbjct: 302 AAGVDVMTFGQYMRPSKRHMPVSEYVTPEAFDKYQKLGMEMGFRYVASGPMVRSSYK 358
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|122216661|sp|Q3LSN5.1|LIAS2_PEA RecName: Full=Lipoyl synthase 2, mitochondrial; AltName: Full=Lipoate synthase 2; Short=LS 2; Short=Lip-syn 2; AltName: Full=Lipoic acid synthase 2; Flags: Precursor gi|75860376|gb|ABA29155.1| putative lipoic acid synthase [Pisum sativum] | Back alignment and taxonomy information |
|---|
Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust.
Identities = 301/357 (84%), Positives = 321/357 (89%)
Query: 1 MRSRFTLALARTLTSRTRPFSSSAQTPPTEPPTKFPQTLAGLRARLASESPALSDFIDLQ 60
M SRF + R SSS T T P++ Q LA LRARLA ESP+LSDFI L+
Sbjct: 2 MYSRFRTVAGNLNCAAKRLSSSSTTTTTTSAPSELQQNLAALRARLAMESPSLSDFISLK 61
Query: 61 SNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECW 120
S+++YSVEVGTKKKPLPKPKWMKESIPGG+KYVQIKKKLRELKLHTVCEEAKCPNLGECW
Sbjct: 62 SDNAYSVEVGTKKKPLPKPKWMKESIPGGEKYVQIKKKLRELKLHTVCEEAKCPNLGECW 121
Query: 121 SGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVIT 180
SGGETGTATATIMILGDTCTRGCRFCNVKTSR PPPPDPDEPTNVAEAIASWGLDYVVIT
Sbjct: 122 SGGETGTATATIMILGDTCTRGCRFCNVKTSRTPPPPDPDEPTNVAEAIASWGLDYVVIT 181
Query: 181 SVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNI 240
SVDRDDL DQGSGHF +TV+KLK LKP+MLIEALVPDFRGN CV +V+KSGL+VFAHNI
Sbjct: 182 SVDRDDLPDQGSGHFTETVQKLKALKPSMLIEALVPDFRGNAECVEKVSKSGLDVFAHNI 241
Query: 241 ETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVR 300
ETVEELQSAVRDHRANFKQSLDVLMMAK+Y PAGTLTKTSIMLGCGETPDQ+V TMEKVR
Sbjct: 242 ETVEELQSAVRDHRANFKQSLDVLMMAKEYAPAGTLTKTSIMLGCGETPDQIVKTMEKVR 301
Query: 301 AAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYK 357
AAGVDVMTFGQ+MRPSKRHMPVSEYITPEAFE+Y+ LGMEMGFRYVASGPMVRSSYK
Sbjct: 302 AAGVDVMTFGQHMRPSKRHMPVSEYITPEAFEKYQTLGMEMGFRYVASGPMVRSSYK 358
|
Source: Pisum sativum Species: Pisum sativum Genus: Pisum Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|122216660|sp|Q3LSN4.1|LIAS1_PEA RecName: Full=Lipoyl synthase 1, mitochondrial; AltName: Full=Lipoate synthase 1; Short=LS 1; Short=Lip-syn 1; AltName: Full=Lipoic acid synthase 1; Flags: Precursor gi|75860378|gb|ABA29156.1| putative lipoic acid synthase [Pisum sativum] | Back alignment and taxonomy information |
|---|
Score = 576 bits (1484), Expect = e-162, Method: Compositional matrix adjust.
Identities = 301/357 (84%), Positives = 320/357 (89%)
Query: 1 MRSRFTLALARTLTSRTRPFSSSAQTPPTEPPTKFPQTLAGLRARLASESPALSDFIDLQ 60
M SRF + R SSS T T P++ Q LA LRARLA ESP+LSDFI L+
Sbjct: 2 MYSRFRTVAGNLNCAAKRLSSSSTTTTTTSAPSELQQNLAALRARLAMESPSLSDFISLK 61
Query: 61 SNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECW 120
S+++YSVEVGTKKKPLPKPKWMKESIPGG+KYVQIKKKLRELKLHTVCEEAKCPNLGECW
Sbjct: 62 SDNAYSVEVGTKKKPLPKPKWMKESIPGGEKYVQIKKKLRELKLHTVCEEAKCPNLGECW 121
Query: 121 SGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVIT 180
SGGETGTATATIMILGDTCTRGCRFCNVKTSR PPPPDPDEPTNVAEAIASWGLDYVVIT
Sbjct: 122 SGGETGTATATIMILGDTCTRGCRFCNVKTSRTPPPPDPDEPTNVAEAIASWGLDYVVIT 181
Query: 181 SVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNI 240
SVDRDDL DQGSGHF +TV+KLK LKP+ LIEALVPDFRGN CV +V+KSGL+VFAHNI
Sbjct: 182 SVDRDDLPDQGSGHFTETVQKLKALKPSTLIEALVPDFRGNAECVEKVSKSGLDVFAHNI 241
Query: 241 ETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVR 300
ETVEELQSAVRDHRANFKQSLDVLMMAK+Y PAGTLTKTSIMLGCGETPDQ+V TMEKVR
Sbjct: 242 ETVEELQSAVRDHRANFKQSLDVLMMAKEYAPAGTLTKTSIMLGCGETPDQIVKTMEKVR 301
Query: 301 AAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYK 357
AAGVDVMTFGQYMRPSKRHMPVSEYITPEAFE+Y+ LGMEMGFRYVASGPMVRSSYK
Sbjct: 302 AAGVDVMTFGQYMRPSKRHMPVSEYITPEAFEKYQTLGMEMGFRYVASGPMVRSSYK 358
|
Source: Pisum sativum Species: Pisum sativum Genus: Pisum Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359496821|ref|XP_002266132.2| PREDICTED: LOW QUALITY PROTEIN: lipoyl synthase, mitochondrial [Vitis vinifera] gi|308191441|sp|A5CB81.1|LIAS_VITVI RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic acid synthase; Flags: Precursor gi|147825263|emb|CAN73265.1| hypothetical protein VITISV_021769 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust.
Identities = 286/332 (86%), Positives = 307/332 (92%), Gaps = 2/332 (0%)
Query: 26 TPPTEPPTKFPQTLAGLRARLASESPALSDFIDLQSNSSYSVEVGTKKKPLPKPKWMKES 85
+PPT P + PQTLA LR RLA ESP+LSDF+ LQ++ YSVEVGTKKKPL KPKWMKES
Sbjct: 35 SPPTNP--EPPQTLASLRHRLAVESPSLSDFVRLQTSDDYSVEVGTKKKPLSKPKWMKES 92
Query: 86 IPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRF 145
IPGG KY QIKKKLR+L LHTVCEEA+CPN+GECWSGGETGTATATIMILGDTCTRGCRF
Sbjct: 93 IPGGAKYTQIKKKLRQLNLHTVCEEARCPNMGECWSGGETGTATATIMILGDTCTRGCRF 152
Query: 146 CNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205
CNVKTSR PPPPDPDEP+ VAEAIASWGLDYVVITSVDRDDL DQGSGHFA+TV+KLK L
Sbjct: 153 CNVKTSRTPPPPDPDEPSKVAEAIASWGLDYVVITSVDRDDLPDQGSGHFAETVQKLKIL 212
Query: 206 KPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLM 265
KPNMLIEALVPDFRG+ GCV +V+KSGL+VFAHNIETVEELQSAVRDHRANFKQSL+VL
Sbjct: 213 KPNMLIEALVPDFRGDPGCVEKVSKSGLDVFAHNIETVEELQSAVRDHRANFKQSLEVLK 272
Query: 266 MAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEY 325
+AK+Y AGTLTKTSIMLGCGETPDQVV TMEKVRAAGVDVMTFGQYMRPSKRHMPVSEY
Sbjct: 273 LAKEYADAGTLTKTSIMLGCGETPDQVVRTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEY 332
Query: 326 ITPEAFERYRALGMEMGFRYVASGPMVRSSYK 357
ITPEAFE+YR LGM+MGFRYVASGPMVRSSYK
Sbjct: 333 ITPEAFEKYRILGMDMGFRYVASGPMVRSSYK 364
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 375 | ||||||
| TAIR|locus:2051384 | 374 | LIP1 "lipoic acid synthase 1" | 0.901 | 0.903 | 0.788 | 1.5e-140 | |
| UNIPROTKB|E2R257 | 373 | LIAS "Lipoyl synthase, mitocho | 0.866 | 0.871 | 0.536 | 3.6e-89 | |
| ZFIN|ZDB-GENE-040426-1528 | 399 | lias "lipoic acid synthetase" | 0.890 | 0.837 | 0.527 | 3.6e-89 | |
| MGI|MGI:1934604 | 373 | Lias "lipoic acid synthetase" | 0.816 | 0.820 | 0.562 | 7.5e-89 | |
| UNIPROTKB|O43766 | 372 | LIAS "Lipoyl synthase, mitocho | 0.866 | 0.873 | 0.533 | 9.6e-89 | |
| RGD|1307270 | 373 | Lias "lipoic acid synthetase" | 0.837 | 0.841 | 0.548 | 9.6e-89 | |
| FB|FBgn0029158 | 377 | Las "Lipoic acid synthase" [Dr | 0.736 | 0.732 | 0.588 | 1.2e-88 | |
| UNIPROTKB|I3LGA8 | 372 | LIAS "Lipoyl synthase, mitocho | 0.866 | 0.873 | 0.533 | 2.5e-88 | |
| UNIPROTKB|Q5BIP7 | 372 | LIAS "Lipoyl synthase, mitocho | 0.736 | 0.741 | 0.602 | 5.3e-88 | |
| UNIPROTKB|F1NEN8 | 339 | LIAS "Uncharacterized protein" | 0.832 | 0.920 | 0.536 | 1.4e-87 |
| TAIR|locus:2051384 LIP1 "lipoic acid synthase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1375 (489.1 bits), Expect = 1.5e-140, P = 1.5e-140
Identities = 272/345 (78%), Positives = 296/345 (85%)
Query: 21 SSSAQTPPTEPPTKFPQTLAGLRARLASESPALSDFIDLQSNSSYSVEVGTXXXXXXXXX 80
SSSA TP T T+ P++L LRARLA+ESP+L+DFI +YSVEVGT
Sbjct: 21 SSSAVTPVTV--TQSPKSLEALRARLANESPSLTDFIH---GDTYSVEVGTKKKPLPKPK 75
Query: 81 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCT 140
WMKESIPGG++YVQIKKKLR+LKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCT
Sbjct: 76 WMKESIPGGERYVQIKKKLRDLKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCT 135
Query: 141 RGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVR 200
RGCRFCNVKTSR NVAEAIASWG+DYVVITSVDRDDL DQGSGHFA+TV+
Sbjct: 136 RGCRFCNVKTSRTPPPPDPNEPNNVAEAIASWGVDYVVITSVDRDDLPDQGSGHFAETVQ 195
Query: 201 KLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQS 260
+LK LKP MLIEALVPDFRG+ GCV +V+KSGL+V AHNIETVEELQS VRDHRANFKQS
Sbjct: 196 RLKFLKPEMLIEALVPDFRGDGGCVEKVSKSGLDVLAHNIETVEELQSFVRDHRANFKQS 255
Query: 261 LDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHM 320
LDVL MAK+Y PAGTLTKTS+MLGCGETPDQVV TMEKVRAAGVDVMTFGQYMRPSKRHM
Sbjct: 256 LDVLRMAKEYAPAGTLTKTSVMLGCGETPDQVVKTMEKVRAAGVDVMTFGQYMRPSKRHM 315
Query: 321 PVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKVVGWCYYL 365
PV+EY+TP+AFERYR LGMEMGFRYVASGPMVRSSYK G YY+
Sbjct: 316 PVAEYVTPDAFERYRLLGMEMGFRYVASGPMVRSSYKA-GE-YYI 358
|
|
| UNIPROTKB|E2R257 LIAS "Lipoyl synthase, mitochondrial" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 890 (318.4 bits), Expect = 3.6e-89, P = 3.6e-89
Identities = 178/332 (53%), Positives = 220/332 (66%)
Query: 32 PTKFPQTLAGLRARLASESPALSDFI--DLQSNSSYSVEVGTXXXXXXXXX----WMKES 85
P + +L + P L DF+ DL S + G W+K
Sbjct: 24 PFRTVSSLPDKKKEFLQNGPDLQDFVSGDLADKSKWDEYKGNLKRQKGERLRLPPWLKTE 83
Query: 86 IPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRF 145
IP G Y ++K LR L LHTVCEEA+CPN+GECW GGE TATATIM++GDTCTRGCRF
Sbjct: 84 IPMGKNYNKLKNTLRNLNLHTVCEEARCPNIGECWGGGEYATATATIMLMGDTCTRGCRF 143
Query: 146 CNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205
C+VKT+R N A+AIA WGLDYVV+TSVDRDD+ D G+ HFA+TV LKE
Sbjct: 144 CSVKTARNPPPLDASEPYNTAKAIAEWGLDYVVLTSVDRDDMPDGGAEHFAKTVSYLKER 203
Query: 206 KPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLM 265
P +L+E L PDFRG+ + +VA SGL+V+AHNIETV ELQ VRD RANF QSL VL
Sbjct: 204 NPKILVECLTPDFRGDLKAIEKVALSGLDVYAHNIETVPELQRKVRDPRANFSQSLRVLK 263
Query: 266 MAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEY 325
AK+ P ++KTSIMLG GE +QV +TM+ +R A VD +T GQYM+P+KRH+ V EY
Sbjct: 264 HAKEVRP-DVISKTSIMLGLGENDEQVYATMKALREADVDCLTLGQYMQPTKRHLKVEEY 322
Query: 326 ITPEAFERYRALGMEMGFRYVASGPMVRSSYK 357
ITPE F+ + +G E+GF Y ASGP+VRSSYK
Sbjct: 323 ITPEKFKYWEKVGNELGFHYTASGPLVRSSYK 354
|
|
| ZFIN|ZDB-GENE-040426-1528 lias "lipoic acid synthetase" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 890 (318.4 bits), Expect = 3.6e-89, P = 3.6e-89
Identities = 181/343 (52%), Positives = 228/343 (66%)
Query: 21 SSSAQTPPTEPPTKFPQTLAGLRARLASESPALSDFI--DLQSNSSYSVEVGTXXXXXXX 78
S++A T + P+ P T + L + L DFI +L S + G
Sbjct: 37 STAASTSSSSSPS--PSTHNDRKKDLREDGLNLQDFISGELSEKSKWEEYRGNLKREKGE 94
Query: 79 XX----WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMI 134
W+K IP G Y ++K LREL LHTVCEEA+CPN+GECW GGE TATATIM+
Sbjct: 95 RLRLPPWLKTEIPIGKNYNKLKNTLRELNLHTVCEEARCPNIGECWGGGEYATATATIML 154
Query: 135 LGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGH 194
+GDTCTRGCRFC+VKT+R N A+AIA+WGLDYVV+TSVDRDD+ D G+ H
Sbjct: 155 MGDTCTRGCRFCSVKTARRPPPLDPDEPYNTAKAIAAWGLDYVVLTSVDRDDIPDGGAEH 214
Query: 195 FAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHR 254
FA+TV +KE +L+E L PDFRG+ V ++A SGL+V+AHN+ETV ELQ VRD R
Sbjct: 215 FAKTVSNIKERNSKILVECLTPDFRGDLAAVEKIALSGLDVYAHNVETVRELQRHVRDPR 274
Query: 255 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMR 314
ANF QSL VL AK V + LTKTSIMLG GET Q+ +T+ ++R +GVD +T GQYM+
Sbjct: 275 ANFDQSLSVLRHAKK-VKSSVLTKTSIMLGLGETDAQIQATLTELRDSGVDCLTLGQYMQ 333
Query: 315 PSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYK 357
P+KRH+ V EY+TPE F + +G EMGF Y ASGP+VRSSYK
Sbjct: 334 PTKRHLKVEEYVTPEKFAFWEKVGQEMGFIYTASGPLVRSSYK 376
|
|
| MGI|MGI:1934604 Lias "lipoic acid synthetase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 887 (317.3 bits), Expect = 7.5e-89, P = 7.5e-89
Identities = 176/313 (56%), Positives = 218/313 (69%)
Query: 51 PALSDFI--DLQSNSSYSVEVGTXXXXXXXXX----WMKESIPGGDKYVQIKKKLRELKL 104
P L DF+ DL S++ G W+K IP G Y ++K LR L L
Sbjct: 42 PDLQDFVSGDLADKSTWDEYKGNLKRQKGERLRLPPWLKTKIPMGKNYNKLKNTLRNLSL 101
Query: 105 HTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTN 164
HTVCEEA+CPN+GECW GGE TATATIM++GDTCTRGCRFC+VKT+R N
Sbjct: 102 HTVCEEARCPNIGECWGGGEYATATATIMLMGDTCTRGCRFCSVKTARNPPPLDANEPDN 161
Query: 165 VAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGC 224
A+AIA WGLDYVV+TSVDRDD+AD G+ H A+TV LKE P +L+E L PDFRG+
Sbjct: 162 TAKAIAEWGLDYVVLTSVDRDDVADGGAEHIAKTVSCLKERNPKILVECLTPDFRGDLRA 221
Query: 225 VREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG 284
V +VA SGL+V+AHN+ETV ELQ VRD RANF QSL VL AK+ P ++KTSIMLG
Sbjct: 222 VEKVALSGLDVYAHNVETVPELQRKVRDPRANFDQSLRVLRHAKEVQP-DVVSKTSIMLG 280
Query: 285 CGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFR 344
GET +QV +T++ +RAA VD +T GQYM+P+KRH+ V EY+TPE F+ + +G E+GF
Sbjct: 281 LGETDEQVYATLKALRAADVDCLTLGQYMQPTKRHLKVEEYVTPEKFKYWEKVGNELGFL 340
Query: 345 YVASGPMVRSSYK 357
Y ASGP+VRSSYK
Sbjct: 341 YTASGPLVRSSYK 353
|
|
| UNIPROTKB|O43766 LIAS "Lipoyl synthase, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 886 (316.9 bits), Expect = 9.6e-89, P = 9.6e-89
Identities = 177/332 (53%), Positives = 221/332 (66%)
Query: 32 PTKFPQTLAGLRARLASESPALSDFI--DLQSNSSYSVEVGTXXXXXXXXX----WMKES 85
P + +L + L P L DF+ DL S++ G W+K
Sbjct: 24 PVRPLSSLPDKKKELLQNGPDLQDFVSGDLADRSTWDEYKGNLKRQKGERLRLPPWLKTE 83
Query: 86 IPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRF 145
IP G Y ++K LR L LHTVCEEA+CPN+GECW GGE TATATIM++GDTCTRGCRF
Sbjct: 84 IPMGKNYNKLKNTLRNLNLHTVCEEARCPNIGECWGGGEYATATATIMLMGDTCTRGCRF 143
Query: 146 CNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205
C+VKT+R N A+AIA WGLDYVV+TSVDRDD+ D G+ H A+TV LKE
Sbjct: 144 CSVKTARNPPPLDASEPYNTAKAIAEWGLDYVVLTSVDRDDMPDGGAEHIAKTVSYLKER 203
Query: 206 KPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLM 265
P +L+E L PDFRG+ + +VA SGL+V+AHN+ETV ELQS VRD RANF QSL VL
Sbjct: 204 NPKILVECLTPDFRGDLKAIEKVALSGLDVYAHNVETVPELQSKVRDPRANFDQSLRVLK 263
Query: 266 MAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEY 325
AK P ++KTSIMLG GE +QV +TM+ +R A VD +T GQYM+P++RH+ V EY
Sbjct: 264 HAKKVQP-DVISKTSIMLGLGENDEQVYATMKALREADVDCLTLGQYMQPTRRHLKVEEY 322
Query: 326 ITPEAFERYRALGMEMGFRYVASGPMVRSSYK 357
ITPE F+ + +G E+GF Y ASGP+VRSSYK
Sbjct: 323 ITPEKFKYWEKVGNELGFHYTASGPLVRSSYK 354
|
|
| RGD|1307270 Lias "lipoic acid synthetase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 886 (316.9 bits), Expect = 9.6e-89, P = 9.6e-89
Identities = 176/321 (54%), Positives = 218/321 (67%)
Query: 43 RARLASESPALSDFI--DLQSNSSYSVEVGTXXXXXXXXX----WMKESIPGGDKYVQIK 96
+ + P L DF+ DL S++ G W+K IP G Y ++K
Sbjct: 34 KKKFLHNGPDLQDFVSGDLADKSTWDDYKGNLKRQKGERLRLPPWLKTKIPMGKNYNKLK 93
Query: 97 KKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXX 156
LR L LHTVCEEA+CPN+GECW GGE TATATIM++GDTCTRGCRFC+VKT+R
Sbjct: 94 NTLRNLNLHTVCEEARCPNIGECWGGGEYATATATIMLMGDTCTRGCRFCSVKTARNPPP 153
Query: 157 XXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVP 216
N A AIA WGLDYVV+TSVDRDD+ D G+ H A+TV LKE P +L+E L P
Sbjct: 154 LDPSEPDNTARAIAEWGLDYVVLTSVDRDDVVDGGAEHIAKTVSCLKERNPKILVECLTP 213
Query: 217 DFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL 276
DFRG+ V +VA SGL+V+AHN+ETV ELQ VRD RANF QSL VL AK+ P +
Sbjct: 214 DFRGDLRAVEKVALSGLDVYAHNVETVPELQRKVRDPRANFDQSLRVLKHAKEVQP-DVV 272
Query: 277 TKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRA 336
+KTSIMLG GET +QV +TM+ +RAA VD +T GQYM+P+KRH+ V EY+TPE F+ +
Sbjct: 273 SKTSIMLGLGETDEQVYATMKALRAADVDCLTLGQYMQPTKRHLKVEEYVTPEKFKYWEE 332
Query: 337 LGMEMGFRYVASGPMVRSSYK 357
+G E+GF Y ASGP+VRSSYK
Sbjct: 333 VGNELGFHYTASGPLVRSSYK 353
|
|
| FB|FBgn0029158 Las "Lipoic acid synthase" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 885 (316.6 bits), Expect = 1.2e-88, P = 1.2e-88
Identities = 163/277 (58%), Positives = 210/277 (75%)
Query: 81 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCT 140
W+K +IP G Y +IK ++RELKL TVCEEA+CPN+GECW GGE GT TATIM++GDTCT
Sbjct: 76 WLKTTIPVGKNYAKIKAQMRELKLSTVCEEARCPNIGECWGGGEHGTQTATIMLMGDTCT 135
Query: 141 RGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVR 200
RGCRFC+VKT+R N A AIASWGLDY+V+TSVDRDDL D GS H A+TVR
Sbjct: 136 RGCRFCSVKTARKPPPLDVNEPVNTATAIASWGLDYIVLTSVDRDDLPDGGSEHIAETVR 195
Query: 201 KLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQS 260
++K N+ +E LVPDFRGN CV+ +A SGL+V+AHNIETVE+L VRD RA+++Q+
Sbjct: 196 EIKARNSNIFVECLVPDFRGNLECVKTIANSGLDVYAHNIETVEKLTPYVRDRRAHYRQT 255
Query: 261 LDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHM 320
L VL AK + P +TK+SIMLG GET +++ +T++ +R AGVD +T GQYM+P+ +H+
Sbjct: 256 LQVLTEAKRFNP-NLITKSSIMLGLGETDEEIENTLKDLREAGVDCVTLGQYMQPTNKHL 314
Query: 321 PVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYK 357
V EY+TPE F+ + G E+GF Y ASGP+VRSSYK
Sbjct: 315 KVIEYVTPEKFKHWEERGNELGFLYTASGPLVRSSYK 351
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| UNIPROTKB|I3LGA8 LIAS "Lipoyl synthase, mitochondrial" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 882 (315.5 bits), Expect = 2.5e-88, P = 2.5e-88
Identities = 177/332 (53%), Positives = 220/332 (66%)
Query: 32 PTKFPQTLAGLRARLASESPALSDFI--DLQSNSSYSVEVGTXXXXXXXXX----WMKES 85
P + +L + P L DF+ DL S++ G W+K
Sbjct: 24 PVRAISSLPDKKKEFLQNGPDLQDFLSGDLADKSTWDDYKGNLKRQKGERLRLPPWLKTE 83
Query: 86 IPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRF 145
IP G Y ++K LR L LHTVCEEA+CPN+GECW GGE TATATIM++GDTCTRGCRF
Sbjct: 84 IPMGKNYNKLKNTLRNLNLHTVCEEARCPNIGECWGGGEYATATATIMLMGDTCTRGCRF 143
Query: 146 CNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205
C+VKT+R N A+AIA WGLDYVV+TSVDRDD+ D G+ HFA+TV LKE
Sbjct: 144 CSVKTARNPPPLDANEPYNTAKAIAEWGLDYVVLTSVDRDDMPDGGAEHFAKTVSYLKER 203
Query: 206 KPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLM 265
P +L+E L PDFRG+ V +VA SGL+V+AHN+ETV ELQ VRD RA F QSL VL
Sbjct: 204 NPKILVECLTPDFRGDLKAVEKVAVSGLDVYAHNVETVPELQRKVRDPRAGFDQSLRVLK 263
Query: 266 MAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEY 325
AK+ P ++KTSIMLG GE +QV +TM+ +R A VD +T GQYM+P+KRH+ V EY
Sbjct: 264 HAKEVRP-DVISKTSIMLGLGENDEQVYATMKALREADVDCLTLGQYMQPTKRHLKVEEY 322
Query: 326 ITPEAFERYRALGMEMGFRYVASGPMVRSSYK 357
ITPE F+ + +G E+GF Y ASGP+VRSSYK
Sbjct: 323 ITPEKFKYWEKVGNELGFHYTASGPLVRSSYK 354
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| UNIPROTKB|Q5BIP7 LIAS "Lipoyl synthase, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 879 (314.5 bits), Expect = 5.3e-88, P = 5.3e-88
Identities = 167/277 (60%), Positives = 205/277 (74%)
Query: 81 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCT 140
W+K IP G Y ++K LR L LHTVCEEA+CPN+GECW GGE TATATIM++GDTCT
Sbjct: 79 WLKTEIPMGKNYNKLKNTLRNLNLHTVCEEARCPNIGECWGGGEYATATATIMLMGDTCT 138
Query: 141 RGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVR 200
RGCRFC+VKT+R N A+AIA WGLDYVV+TSVDRDD+ D G+ HFA+TV
Sbjct: 139 RGCRFCSVKTARNPPPLDANEPYNTAKAIAEWGLDYVVLTSVDRDDMPDGGAEHFAKTVS 198
Query: 201 KLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQS 260
LKE P +L+E L PDFRG+ + +VA SGL+V+AHN+ETV ELQ VRD RANF QS
Sbjct: 199 YLKERNPKILVECLTPDFRGDLKAIEKVALSGLDVYAHNVETVPELQRKVRDPRANFDQS 258
Query: 261 LDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHM 320
L VL AK+ P ++KTSIMLG GE +QV +TM+ +R A VD +T GQYM+P+KRH+
Sbjct: 259 LRVLKHAKEVRP-DVISKTSIMLGLGENDEQVYATMKALREADVDCLTLGQYMQPTKRHL 317
Query: 321 PVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYK 357
V EYITPE F+ + +G E+GF Y ASGP+VRSSYK
Sbjct: 318 KVEEYITPEKFKYWEKVGNELGFHYTASGPLVRSSYK 354
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| UNIPROTKB|F1NEN8 LIAS "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 875 (313.1 bits), Expect = 1.4e-87, P = 1.4e-87
Identities = 171/319 (53%), Positives = 220/319 (68%)
Query: 45 RLASESPALSDFI--DLQSNSSYSVEVGTXXXXXXXXX----WMKESIPGGDKYVQIKKK 98
++ P L DF+ DL S ++ G W+K IP G Y ++K
Sbjct: 4 KILQTGPDLEDFVSGDLADKSVWAEYKGNLKRQKGERLRLPPWLKTEIPMGKNYNKLKNT 63
Query: 99 LRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXX 158
LR L LHTVCEEA+CPN+GECW GGE TATATIM++GDTCTRGCRFC+VKT++
Sbjct: 64 LRSLNLHTVCEEARCPNIGECWGGGEYATATATIMLMGDTCTRGCRFCSVKTAKNPPPLD 123
Query: 159 XXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF 218
N A+AIA WGLDYVV+TSVDRDD+ D G+ HFA+TV LKE +++E L PDF
Sbjct: 124 PEEPYNTAKAIAEWGLDYVVLTSVDRDDMPDGGAEHFAKTVSHLKERNSKIVVECLTPDF 183
Query: 219 RGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTK 278
RG+ V +VA SGL+V+AHN+ETV ELQ VRD RANF+QS+ VL AK P ++K
Sbjct: 184 RGDLNAVEKVALSGLDVYAHNVETVPELQRKVRDPRANFEQSVRVLKHAKAVQPR-VISK 242
Query: 279 TSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALG 338
TS+MLG GET +QV++TM+ +R AGVD +T GQYM+P+KRH+ V EY+TPE F+ + +G
Sbjct: 243 TSLMLGLGETDEQVLATMKLLREAGVDCLTLGQYMQPTKRHLKVEEYVTPEKFKYWEKVG 302
Query: 339 MEMGFRYVASGPMVRSSYK 357
++GF Y ASGP+VRSSYK
Sbjct: 303 NDLGFHYTASGPLVRSSYK 321
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q16W22 | LIAS_AEDAE | 2, ., 8, ., 1, ., 8 | 0.5533 | 0.8826 | 0.8422 | N/A | no |
| Q5AQE4 | LIPA_EMENI | 2, ., 8, ., 1, ., 8 | 0.5576 | 0.8186 | 0.7433 | yes | no |
| B6HFQ1 | LIPA_PENCW | 2, ., 8, ., 1, ., 8 | 0.5384 | 0.8746 | 0.7884 | yes | no |
| B3M996 | LIAS_DROAN | 2, ., 8, ., 1, ., 8 | 0.5495 | 0.84 | 0.8377 | N/A | no |
| A2XU53 | LIAS_ORYSI | 2, ., 8, ., 1, ., 8 | 0.8369 | 0.832 | 0.8167 | N/A | no |
| B9RW49 | LIAS_RICCO | 2, ., 8, ., 1, ., 8 | 0.8571 | 0.88 | 0.9482 | N/A | no |
| C4JE77 | LIPA_UNCRE | 2, ., 8, ., 1, ., 8 | 0.5217 | 0.928 | 0.8345 | N/A | no |
| Q5XIH4 | LIAS_RAT | 2, ., 8, ., 1, ., 8 | 0.5794 | 0.8373 | 0.8418 | yes | no |
| C7Z527 | LIPA_NECH7 | 2, ., 8, ., 1, ., 8 | 0.5203 | 0.9386 | 0.8543 | N/A | no |
| A5CB81 | LIAS_VITVI | 2, ., 8, ., 1, ., 8 | 0.8614 | 0.88 | 0.8396 | yes | no |
| B8A031 | LIAS_MAIZE | 2, ., 8, ., 1, ., 8 | 0.8042 | 0.8533 | 0.8355 | N/A | no |
| B4IUG3 | LIAS1_DROYA | 2, ., 8, ., 1, ., 8 | 0.5592 | 0.8506 | 0.8416 | N/A | no |
| B9H5L9 | LIAS_POPTR | 2, ., 8, ., 1, ., 8 | 0.8563 | 0.952 | 0.9272 | yes | no |
| B4IAA7 | LIAS_DROSE | 2, ., 8, ., 1, ., 8 | 0.5531 | 0.8506 | 0.8461 | N/A | no |
| B4MXR6 | LIAS_DROWI | 2, ., 8, ., 1, ., 8 | 0.5531 | 0.8506 | 0.8575 | N/A | no |
| Q2LYK1 | LIAS_DROPS | 2, ., 8, ., 1, ., 8 | 0.5333 | 0.8933 | 0.8957 | yes | no |
| C0NXP6 | LIPA_AJECG | 2, ., 8, ., 1, ., 8 | 0.5133 | 0.9226 | 0.8046 | N/A | no |
| Q3LSN4 | LIAS1_PEA | 2, ., 8, ., 1, ., 8 | 0.8431 | 0.952 | 0.9494 | N/A | no |
| A9NNH7 | LIAS_PICSI | 2, ., 8, ., 1, ., 8 | 0.7402 | 0.9226 | 0.8963 | N/A | no |
| Q9ZWT1 | LIAS_ARATH | 2, ., 8, ., 1, ., 8 | 0.8179 | 0.9386 | 0.9411 | yes | no |
| Q99M04 | LIAS_MOUSE | 2, ., 8, ., 1, ., 8 | 0.5910 | 0.816 | 0.8203 | yes | no |
| A4RZ86 | LIAS_OSTLU | 2, ., 8, ., 1, ., 8 | 0.6160 | 0.84 | 0.7894 | yes | no |
| Q5BIP7 | LIAS_BOVIN | 2, ., 8, ., 1, ., 8 | 0.5619 | 0.864 | 0.8709 | yes | no |
| B7FRU7 | LIPA1_PHATC | 2, ., 8, ., 1, ., 8 | 0.5424 | 0.9013 | 0.8428 | yes | no |
| Q2U4H2 | LIPA_ASPOR | 2, ., 8, ., 1, ., 8 | 0.5145 | 0.9466 | 0.8554 | yes | no |
| Q7XRF1 | LIAS_ORYSJ | 2, ., 8, ., 1, ., 8 | 0.8338 | 0.832 | 0.8167 | yes | no |
| C5Y9R0 | LIAS_SORBI | 2, ., 8, ., 1, ., 8 | 0.8198 | 0.84 | 0.8160 | N/A | no |
| B3NIL9 | LIAS_DROER | 2, ., 8, ., 1, ., 8 | 0.5531 | 0.8506 | 0.8416 | N/A | no |
| Q6PHG4 | LIAS_DANRE | 2, ., 8, ., 1, ., 8 | 0.5929 | 0.8133 | 0.7644 | yes | no |
| B6K4J2 | LIPA_SCHJY | 2, ., 8, ., 1, ., 8 | 0.5740 | 0.8213 | 0.8169 | N/A | no |
| B0WAU6 | LIAS_CULQU | 2, ., 8, ., 1, ., 8 | 0.5722 | 0.8426 | 0.8315 | N/A | no |
| Q4WWP1 | LIPA_ASPFU | 2, ., 8, ., 1, ., 8 | 0.5566 | 0.816 | 0.7391 | yes | no |
| D0NP70 | LIPA_PHYIT | 2, ., 8, ., 1, ., 8 | 0.5417 | 0.896 | 0.8772 | N/A | no |
| Q7JQW6 | LIAS_DROME | 2, ., 8, ., 1, ., 8 | 0.5299 | 0.9013 | 0.8965 | yes | no |
| A8N1T1 | LIPA_COPC7 | 2, ., 8, ., 1, ., 8 | 0.5538 | 0.8506 | 0.8179 | N/A | no |
| B4J3F3 | LIAS_DROGR | 2, ., 8, ., 1, ., 8 | 0.5623 | 0.8506 | 0.8763 | N/A | no |
| C5DGZ5 | LIPA_LACTC | 2, ., 8, ., 1, ., 8 | 0.5094 | 0.9146 | 0.9245 | yes | no |
| B4KYY0 | LIAS_DROMO | 2, ., 8, ., 1, ., 8 | 0.5501 | 0.8506 | 0.8763 | N/A | no |
| O43766 | LIAS_HUMAN | 2, ., 8, ., 1, ., 8 | 0.5477 | 0.9013 | 0.9086 | yes | no |
| Q3LSN5 | LIAS2_PEA | 2, ., 8, ., 1, ., 8 | 0.8431 | 0.952 | 0.9494 | N/A | no |
| Q6GQ48 | LIAS_XENLA | 2, ., 8, ., 1, ., 8 | 0.56 | 0.9146 | 0.9220 | N/A | no |
| B4PF83 | LIAS2_DROYA | 2, ., 8, ., 1, ., 8 | 0.5592 | 0.8506 | 0.8416 | N/A | no |
| B8NUL8 | LIPA_ASPFN | 2, ., 8, ., 1, ., 8 | 0.5145 | 0.9466 | 0.8554 | N/A | no |
| C3Y3G4 | LIAS_BRAFL | 2, ., 8, ., 1, ., 8 | 0.5508 | 0.8693 | 0.8670 | yes | no |
| C5FZJ2 | LIPA_ARTOC | 2, ., 8, ., 1, ., 8 | 0.5216 | 0.9226 | 0.8439 | N/A | no |
| B7FM45 | LIAS_MEDTR | 2, ., 8, ., 1, ., 8 | 0.8407 | 0.9493 | 0.9417 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 2.8.1.8 | 0.994 |
| 3rd Layer | 2.8.1 | 0.998 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | eugene3.00050253 | lipoic acid synthase (385 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | gw1.II.4099.1 | hypothetical protein (233 aa) | • | • | • | • | 0.975 | ||||
 | grail3.0116013301 | hypothetical protein (239 aa) | • | • | • | • | 0.973 | ||||
 | LPD1 | precursor of dehydrogenase dihydrolipoamide dehydrogenase 1 (EC-1.8.1.4) (511 aa) | • | • | • | 0.479 | |||||
 | gw1.X.3923.1 | hypothetical protein (417 aa) | • | • | 0.409 | ||||||
 | LPD4 | precursor of dehydrogenase dihydrolipoamide dehydrogenase 4 (EC-1.8.1.4) (529 aa) | • | • | 0.407 | ||||||
 | LPD3 | precursor of dehydrogenase dihydrolipoamide dehydrogenase 3 (EC-1.8.1.4) (527 aa) | • | • | 0.404 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 375 | |||
| PLN02428 | 349 | PLN02428, PLN02428, lipoic acid synthase | 0.0 | |
| PRK05481 | 289 | PRK05481, PRK05481, lipoyl synthase; Provisional | 1e-163 | |
| COG0320 | 306 | COG0320, LipA, Lipoate synthase [Coenzyme metaboli | 1e-154 | |
| PTZ00413 | 398 | PTZ00413, PTZ00413, lipoate synthase; Provisional | 1e-150 | |
| PRK12928 | 290 | PRK12928, PRK12928, lipoyl synthase; Provisional | 1e-130 | |
| TIGR00510 | 302 | TIGR00510, lipA, lipoate synthase | 1e-129 | |
| pfam04055 | 165 | pfam04055, Radical_SAM, Radical SAM superfamily | 1e-18 | |
| smart00729 | 216 | smart00729, Elp3, Elongator protein 3, MiaB family | 6e-17 | |
| cd01335 | 204 | cd01335, Radical_SAM, Radical SAM superfamily | 1e-07 | |
| COG1060 | 370 | COG1060, ThiH, Thiamine biosynthesis enzyme ThiH a | 7e-05 | |
| COG0502 | 335 | COG0502, BioB, Biotin synthase and related enzymes | 0.001 |
| >gnl|CDD|215236 PLN02428, PLN02428, lipoic acid synthase | Back alignment and domain information |
|---|
Score = 641 bits (1656), Expect = 0.0
Identities = 240/335 (71%), Positives = 275/335 (82%), Gaps = 6/335 (1%)
Query: 23 SAQTPPTEPPTKFPQTLAGLRARLASESPALSDFIDLQSNSSYSVEVGTKKKPLPKPKWM 82
T T P T PQTLA LRARLASESP+L DF+ L + + KPLPKPKW+
Sbjct: 1 VTSTSTTAPQT--PQTLAALRARLASESPSLGDFVSLGPYTLG---SYGRDKPLPKPKWL 55
Query: 83 KESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRG 142
++ PGG+KY +IK+KLRELKL+TVCEEA+CPN+GECW+GG TGTATATIMILGDTCTRG
Sbjct: 56 RQRAPGGEKYTEIKEKLRELKLNTVCEEAQCPNIGECWNGGGTGTATATIMILGDTCTRG 115
Query: 143 CRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKL 202
CRFC VKTSR PPPPDPDEP NVAEAIASWG+DYVV+TSVDRDDL D GSGHFA+TVR+L
Sbjct: 116 CRFCAVKTSRTPPPPDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSGHFAETVRRL 175
Query: 203 KELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLD 262
K+LKP +L+EALVPDFRG+ G V VA SGL+VFAHNIETVE LQ VRD RA +KQSLD
Sbjct: 176 KQLKPEILVEALVPDFRGDLGAVETVATSGLDVFAHNIETVERLQRIVRDPRAGYKQSLD 235
Query: 263 VLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPV 322
VL AK+ P G LTKTSIMLG GET ++VV TME +RAAGVDV+TFGQY+RP+KRH+PV
Sbjct: 236 VLKHAKESKP-GLLTKTSIMLGLGETDEEVVQTMEDLRAAGVDVVTFGQYLRPTKRHLPV 294
Query: 323 SEYITPEAFERYRALGMEMGFRYVASGPMVRSSYK 357
EY+TPE FE +R G EMGFRYVASGP+VRSSYK
Sbjct: 295 KEYVTPEKFEFWREYGEEMGFRYVASGPLVRSSYK 329
|
Length = 349 |
| >gnl|CDD|235493 PRK05481, PRK05481, lipoyl synthase; Provisional | Back alignment and domain information |
|---|
Score = 458 bits (1182), Expect = e-163
Identities = 154/286 (53%), Positives = 204/286 (71%), Gaps = 8/286 (2%)
Query: 72 KKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATAT 131
+K KP W++ +P G++Y +IKK LREL LHTVCEEA CPN+GECWS G TAT
Sbjct: 1 AEKVARKPDWLRVKLPTGEEYTEIKKLLRELGLHTVCEEASCPNIGECWSRG-----TAT 55
Query: 132 IMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQG 191
MILGD CTR C FC+V T R P P DPDEP VAEA+A GL YVVITSVDRDDL D G
Sbjct: 56 FMILGDICTRRCPFCDVATGR-PLPLDPDEPERVAEAVARMGLKYVVITSVDRDDLPDGG 114
Query: 192 SGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVR 251
+ HFA+T+R ++EL P IE L+PDFRG + V + +VF HN+ETV L VR
Sbjct: 115 AQHFAETIRAIRELNPGTTIEVLIPDFRGRMDALLTVLDARPDVFNHNLETVPRLYKRVR 174
Query: 252 DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 311
A++++SL++L AK+ P G TK+ +M+G GET ++V+ M+ +RAAGVD++T GQ
Sbjct: 175 -PGADYERSLELLKRAKELHP-GIPTKSGLMVGLGETDEEVLEVMDDLRAAGVDILTIGQ 232
Query: 312 YMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYK 357
Y++PS++H+PV Y+TPE F+ Y+ + +E+GF +VASGP+VRSSY
Sbjct: 233 YLQPSRKHLPVERYVTPEEFDEYKEIALELGFLHVASGPLVRSSYH 278
|
Length = 289 |
| >gnl|CDD|223397 COG0320, LipA, Lipoate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 435 bits (1120), Expect = e-154
Identities = 154/292 (52%), Positives = 201/292 (68%), Gaps = 8/292 (2%)
Query: 66 SVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGET 125
V ++ L KP+W+K P G +Y +IK+ LR+ LHTVCEEA CPN+GECWS G
Sbjct: 12 VKNVRPNEELLRKPEWLKVKAPTGSRYQEIKEILRKNGLHTVCEEASCPNIGECWSRG-- 69
Query: 126 GTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRD 185
TAT MILGD CTR CRFC+VKT R P P DPDEP VAEA+ GL YVVITSVDRD
Sbjct: 70 ---TATFMILGDICTRRCRFCDVKTGR-PNPLDPDEPERVAEAVKDMGLKYVVITSVDRD 125
Query: 186 DLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEE 245
DL D G+ HFA+ +R ++EL P IE L PDFRGN+ + VA +G +VF HN+ETV
Sbjct: 126 DLPDGGAQHFAECIRAIRELNPQTTIEVLTPDFRGNDDALEIVADAGPDVFNHNVETVPR 185
Query: 246 LQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVD 305
L VR A +++SL +L AK+ P TK+ +M+G GET ++V+ M+ +R+AGVD
Sbjct: 186 LYPRVR-PGATYERSLSLLERAKELGPD-IPTKSGLMVGLGETDEEVIEVMDDLRSAGVD 243
Query: 306 VMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYK 357
++T GQY++PS++H+PV Y+TPE F+ + EMGF +VASGP+VRSSY
Sbjct: 244 ILTIGQYLQPSRKHLPVQRYVTPEEFDELEEVAEEMGFLHVASGPLVRSSYH 295
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Length = 306 |
| >gnl|CDD|240408 PTZ00413, PTZ00413, lipoate synthase; Provisional | Back alignment and domain information |
|---|
Score = 430 bits (1107), Expect = e-150
Identities = 178/372 (47%), Positives = 233/372 (62%), Gaps = 19/372 (5%)
Query: 2 RSRFTLALARTLTSRTRPFSS----SAQTPPTEPPTK--FPQTLAGLRARLASES---PA 52
F A AR +P S A PP +P K F + R RL S+ +
Sbjct: 9 LYSFFSAAARAKCGIGKPSESTKSAVADVPPKDPQVKQIFLERF---RERLNSDKTGKNS 65
Query: 53 LSDFIDLQSNSSYSVEV--GTKKKPLPKPKWMKESIPGG----DKYVQIKKKLRELKLHT 106
L F+DL S K+ P P W K +P G ++ +I++ +RE KLHT
Sbjct: 66 LEGFVDLPEGLKPSAASIGPIKRGEEPLPPWFKVKVPKGASRRPRFNRIRRSMREKKLHT 125
Query: 107 VCEEAKCPNLGECWSGG-ETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNV 165
VCEEAKCPN+GECW GG E GTATATIM++GD CTRGCRFC+VKTSR PPP DP+EP V
Sbjct: 126 VCEEAKCPNIGECWGGGDEEGTATATIMVMGDHCTRGCRFCSVKTSRKPPPLDPNEPEKV 185
Query: 166 AEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCV 225
A+A+A G+DY+V+T VDRDDL D G+ H A+ V +KE P +L+EALV DF G+ V
Sbjct: 186 AKAVAEMGVDYIVMTMVDRDDLPDGGASHVARCVELIKESNPELLLEALVGDFHGDLKSV 245
Query: 226 REVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 285
++A S L+V+AHNIE VE + VRD RA+++QSL VL K++ LTK+SIMLG
Sbjct: 246 EKLANSPLSVYAHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGL 305
Query: 286 GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345
GET ++V T+ +R AGV +T GQY++P+K + VS Y P+ FE + M+MGF Y
Sbjct: 306 GETEEEVRQTLRDLRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLY 365
Query: 346 VASGPMVRSSYK 357
ASGP+VRSSY+
Sbjct: 366 CASGPLVRSSYR 377
|
Length = 398 |
| >gnl|CDD|237261 PRK12928, PRK12928, lipoyl synthase; Provisional | Back alignment and domain information |
|---|
Score = 375 bits (965), Expect = e-130
Identities = 131/281 (46%), Positives = 178/281 (63%), Gaps = 9/281 (3%)
Query: 77 PKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILG 136
P+W++ I + +++ +++ +LHT+CEEA+CPN GEC++ G TAT +I+G
Sbjct: 13 RLPEWLRAPIGKASELETVQRLVKQRRLHTICEEARCPNRGECYAQG-----TATFLIMG 67
Query: 137 DTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFA 196
CTR C FC V R P P DPDEP VAEA+A+ GL YVV+TSV RDDL D G+ HF
Sbjct: 68 SICTRRCAFCQVDKGR-PMPLDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFV 126
Query: 197 QTVRKLKELKPNMLIEALVPDFRGNN-GCVREVAKSGLNVFAHNIETVEELQSAVRDHRA 255
T+ ++ P IE L PDF G + V + +VF HN+ETV LQ AVR A
Sbjct: 127 ATIAAIRARNPGTGIEVLTPDFWGGQRERLATVLAAKPDVFNHNLETVPRLQKAVR-RGA 185
Query: 256 NFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRP 315
++++SLD+L AK+ P TK+ +MLG GET D+V+ T+ +RA G D +T GQY+RP
Sbjct: 186 DYQRSLDLLARAKELAP-DIPTKSGLMLGLGETEDEVIETLRDLRAVGCDRLTIGQYLRP 244
Query: 316 SKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSY 356
S H+PV Y TPE FE + E+GF +V SGP+VRSSY
Sbjct: 245 SLAHLPVQRYWTPEEFEALGQIARELGFSHVRSGPLVRSSY 285
|
Length = 290 |
| >gnl|CDD|233002 TIGR00510, lipA, lipoate synthase | Back alignment and domain information |
|---|
Score = 371 bits (954), Expect = e-129
Identities = 143/286 (50%), Positives = 190/286 (66%), Gaps = 7/286 (2%)
Query: 72 KKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATAT 131
K+ L KP+W+K +P G QIK ++ LHTVCEEA CPNL ECW+ G TAT
Sbjct: 11 KEILLRKPEWLKIKLPLGTVIAQIKNTMKNKGLHTVCEEASCPNLTECWNHG-----TAT 65
Query: 132 IMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQG 191
MILGD CTR C FC+V R P PPDP+EP +AE I GL YVVITSVDRDDL D G
Sbjct: 66 FMILGDICTRRCPFCDVAHGRNPLPPDPEEPAKLAETIKDMGLKYVVITSVDRDDLEDGG 125
Query: 192 SGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVR 251
+ H A+ + ++E PN+ IE LVPDFRGN + + + +V+ HN+ETVE L VR
Sbjct: 126 ASHLAECIEAIREKLPNIKIETLVPDFRGNIAALDILLDAPPDVYNHNLETVERLTPFVR 185
Query: 252 DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 311
A ++ SL +L AK+Y+P TK+ IM+G GET +++ T++ +R GV ++T GQ
Sbjct: 186 -PGATYRWSLKLLERAKEYLPN-LPTKSGIMVGLGETNEEIKQTLKDLRDHGVTMVTLGQ 243
Query: 312 YMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYK 357
Y+RPS+RH+PV Y++PE F+ YR++ +EMGF + A GP VRSSY
Sbjct: 244 YLRPSRRHLPVKRYVSPEEFDYYRSVALEMGFLHAACGPFVRSSYH 289
|
This enzyme is an iron-sulfur protein. It is localized to mitochondria in yeast and Arabidopsis. It generates lipoic acid, a thiol antioxidant that is linked to a specific Lys as prosthetic group for the pyruvate and alpha-ketoglutarate dehydrogenase complexes and the glycine-cleavage system. The family shows strong sequence conservation [Biosynthesis of cofactors, prosthetic groups, and carriers, Lipoate]. Length = 302 |
| >gnl|CDD|217866 pfam04055, Radical_SAM, Radical SAM superfamily | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 1e-18
Identities = 28/171 (16%), Positives = 68/171 (39%), Gaps = 10/171 (5%)
Query: 133 MILGDTCTRGCRFCNVKTSRAPPPP---DPDEPTNVAEAIASWGLDYVVITSVDRDDLAD 189
+I+ C C +C + RA P+E A+ +A G++ V++T + L D
Sbjct: 1 IIVTRGCNLRCTYCAFPSIRARGKGRELSPEEILEEAKELARLGVEVVILTGGEPLLLPD 60
Query: 190 QGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSA 249
+ I + + E+ ++GL+ + ++++ ++
Sbjct: 61 LVELLER---LLKLREGEGIRITLETNGTLLDEELLEELKEAGLDRVSISLQSGDDEVLK 117
Query: 250 VRDHRANFKQSLDVLMMAKDY-VPAGTLTKTSIMLGCGETPDQVVSTMEKV 299
+ + F++ L+ L + ++ +P I+ GE + + T+E +
Sbjct: 118 IINRGHTFEEVLEALELLREAGIPVVVDN---IVGLPGENDEDLEETLELL 165
|
Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerisation, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Length = 165 |
| >gnl|CDD|214792 smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 6e-17
Identities = 33/220 (15%), Positives = 82/220 (37%), Gaps = 18/220 (8%)
Query: 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSV----- 182
+ I+ C R C FC+ + R + E +A G ++ +V
Sbjct: 1 PLALYIITRGCPRRCTFCSFPSLRGKLRSRYLEALVREIELLAEKGEKEGLVGTVFIGGG 60
Query: 183 DRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIET 242
L+ + + +R++ L ++ I + + ++G+N + +++
Sbjct: 61 TPTLLSPEQLEELLEAIREILGLAKDVEITIETRPDTLTEELLEALKEAGVNRVSLGVQS 120
Query: 243 VEE--LQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG-CGETPDQVVSTMEKV 299
++ L++ R H + L+ + + ++ P T +++G GET + T++ +
Sbjct: 121 GDDEVLKAINRGH--TVEDVLEAVELLREAGPIK--VSTDLIVGLPGETEEDFEETLKLL 176
Query: 300 RAAGVDVMTFGQYM-----RPSKRHMPVSEYITPEAFERY 334
+ G D ++ +K + + E E
Sbjct: 177 KELGPDRVSIFPLSPRPGTPLAKMYKRLKPPTKEERAELL 216
|
This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases. Length = 216 |
| >gnl|CDD|100105 cd01335, Radical_SAM, Radical SAM superfamily | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 1e-07
Identities = 31/184 (16%), Positives = 70/184 (38%), Gaps = 8/184 (4%)
Query: 133 MILGDTCTRGCRFCNVKTSRAPPPPDPDEPTN-VAEAIASWGLDYVVITSVDRDDLADQG 191
+ L C C FC+ S+ P P E + + + V+ + L
Sbjct: 1 LELTRGCNLNCGFCSNPASKGRGPESPPEIEEILDIVLEAKERGVEVVILTGGEPLLYP- 59
Query: 192 SGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVR 251
A+ +R+LK+ P I ++E+ + GL+ ++++ +E +
Sbjct: 60 --ELAELLRRLKKELPGFEISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVA--D 115
Query: 252 DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG-CGETPDQVVSTMEKVRAA-GVDVMTF 309
R + + + L K+ AG T++++G E + + +E + D ++
Sbjct: 116 KIRGSGESFKERLEALKELREAGLGLSTTLLVGLGDEDEEDDLEELELLAEFRSPDRVSL 175
Query: 310 GQYM 313
+ +
Sbjct: 176 FRLL 179
|
Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme of the biosynthesis of molybdopterin. Length = 204 |
| >gnl|CDD|223988 COG1060, ThiH, Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 7e-05
Identities = 35/180 (19%), Positives = 66/180 (36%), Gaps = 26/180 (14%)
Query: 139 CTRGCRFCNVKTSRAPPPP---DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHF 195
C C FC P P+E G+ V+I + + ++
Sbjct: 69 CVNDCTFCAFYRKPGDPKAYTLSPEEILEEVREAVKRGITEVLIVGGEH---PELSLEYY 125
Query: 196 AQTVRKLKELKPNMLIEALVP---DFRGNNG------CVREVAKSGLNVFAHNIETVEEL 246
+ R +KE P++ I AL F G ++ + ++GL+ E+
Sbjct: 126 EELFRTIKEEFPDLHIHALSAGEILFLAREGGLSYEEVLKRLKEAGLDSM---PGGGAEI 182
Query: 247 QSA-VRDH----RANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRA 301
S VR + + ++ L++ A G T +++LG ET + + +E +R
Sbjct: 183 LSEEVRKIHCPPKKSPEEWLEIHERAHR---LGIPTTATMLLGHVETREDRIDHLEHIRD 239
|
Length = 370 |
| >gnl|CDD|223576 COG0502, BioB, Biotin synthase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 227 EVAKSGLNVFAHNIETVEELQSAVR-DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 285
++A +G++ + HN+ET E + ++ L+ L ++ AG + ++G
Sbjct: 149 KLADAGVDRYNHNLETSPEFYENIITTRT--YEDRLNTLENVRE---AGIEVCSGGIVGL 203
Query: 286 GETPDQVV 293
GET +
Sbjct: 204 GETVEDRA 211
|
Length = 335 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 375 | |||
| KOG2672 | 360 | consensus Lipoate synthase [Coenzyme transport and | 100.0 | |
| COG0320 | 306 | LipA Lipoate synthase [Coenzyme metabolism] | 100.0 | |
| PTZ00413 | 398 | lipoate synthase; Provisional | 100.0 | |
| PLN02428 | 349 | lipoic acid synthase | 100.0 | |
| TIGR00510 | 302 | lipA lipoate synthase. The family shows strong seq | 100.0 | |
| PRK12928 | 290 | lipoyl synthase; Provisional | 100.0 | |
| PRK05481 | 289 | lipoyl synthase; Provisional | 100.0 | |
| PRK08444 | 353 | hypothetical protein; Provisional | 99.97 | |
| PRK05927 | 350 | hypothetical protein; Provisional | 99.97 | |
| COG0621 | 437 | MiaB 2-methylthioadenine synthetase [Translation, | 99.97 | |
| TIGR03700 | 351 | mena_SCO4494 putative menaquinone biosynthesis pro | 99.97 | |
| PRK05926 | 370 | hypothetical protein; Provisional | 99.96 | |
| PRK08445 | 348 | hypothetical protein; Provisional | 99.96 | |
| PRK08508 | 279 | biotin synthase; Provisional | 99.96 | |
| PRK15108 | 345 | biotin synthase; Provisional | 99.96 | |
| COG0502 | 335 | BioB Biotin synthase and related enzymes [Coenzyme | 99.95 | |
| PLN02389 | 379 | biotin synthase | 99.95 | |
| PRK09234 | 843 | fbiC FO synthase; Reviewed | 99.95 | |
| PRK07360 | 371 | FO synthase subunit 2; Reviewed | 99.95 | |
| COG1060 | 370 | ThiH Thiamine biosynthesis enzyme ThiH and related | 99.95 | |
| TIGR03699 | 340 | mena_SCO4550 menaquinone biosynthesis protein, SCO | 99.95 | |
| TIGR00423 | 309 | radical SAM domain protein, CofH subfamily. This p | 99.95 | |
| TIGR03551 | 343 | F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav | 99.95 | |
| PRK06256 | 336 | biotin synthase; Validated | 99.94 | |
| PRK09240 | 371 | thiH thiamine biosynthesis protein ThiH; Reviewed | 99.94 | |
| TIGR03550 | 322 | F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflav | 99.94 | |
| PRK07094 | 323 | biotin synthase; Provisional | 99.94 | |
| PRK09234 | 843 | fbiC FO synthase; Reviewed | 99.93 | |
| TIGR02351 | 366 | thiH thiazole biosynthesis protein ThiH. Members t | 99.93 | |
| PRK14332 | 449 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.92 | |
| PRK14340 | 445 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.92 | |
| PRK14327 | 509 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.92 | |
| PRK14339 | 420 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.92 | |
| PRK09613 | 469 | thiH thiamine biosynthesis protein ThiH; Reviewed | 99.91 | |
| PRK14329 | 467 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.91 | |
| PRK14335 | 455 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.91 | |
| PRK14336 | 418 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.91 | |
| PRK06245 | 336 | cofG FO synthase subunit 1; Reviewed | 99.91 | |
| PRK14337 | 446 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.9 | |
| TIGR00433 | 296 | bioB biotin synthetase. Catalyzes the last step of | 99.9 | |
| TIGR01574 | 438 | miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-3 | 99.9 | |
| TIGR01579 | 414 | MiaB-like-C MiaB-like tRNA modifying enzyme. This | 99.9 | |
| PRK14331 | 437 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.9 | |
| PRK14326 | 502 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.9 | |
| PRK14328 | 439 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.89 | |
| PRK14330 | 434 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.89 | |
| PRK14862 | 440 | rimO ribosomal protein S12 methylthiotransferase; | 99.89 | |
| TIGR01125 | 430 | MiaB-like tRNA modifying enzyme YliG, TIGR01125. T | 99.89 | |
| PRK14338 | 459 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.89 | |
| TIGR00089 | 429 | RNA modification enzyme, MiaB family. This subfami | 99.89 | |
| PRK14325 | 444 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.89 | |
| PRK14333 | 448 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.89 | |
| TIGR01578 | 420 | MiaB-like-B MiaB-like tRNA modifying enzyme, archa | 99.88 | |
| PRK14334 | 440 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.88 | |
| PRK06267 | 350 | hypothetical protein; Provisional | 99.85 | |
| KOG2900 | 380 | consensus Biotin synthase [Coenzyme transport and | 99.81 | |
| KOG2492 | 552 | consensus CDK5 activator-binding protein [Signal t | 99.77 | |
| smart00729 | 216 | Elp3 Elongator protein 3, MiaB family, Radical SAM | 99.75 | |
| PRK01254 | 707 | hypothetical protein; Provisional | 99.69 | |
| TIGR03471 | 472 | HpnJ hopanoid biosynthesis associated radical SAM | 99.69 | |
| TIGR02026 | 497 | BchE magnesium-protoporphyrin IX monomethyl ester | 99.69 | |
| cd01335 | 204 | Radical_SAM Radical SAM superfamily. Enzymes of th | 99.68 | |
| PRK08207 | 488 | coproporphyrinogen III oxidase; Provisional | 99.67 | |
| PF04055 | 166 | Radical_SAM: Radical SAM superfamily; InterPro: IP | 99.66 | |
| PRK00955 | 620 | hypothetical protein; Provisional | 99.66 | |
| PRK08599 | 377 | coproporphyrinogen III oxidase; Provisional | 99.65 | |
| TIGR01212 | 302 | radical SAM protein, TIGR01212 family. This unchar | 99.65 | |
| PRK13361 | 329 | molybdenum cofactor biosynthesis protein A; Provis | 99.62 | |
| PRK05660 | 378 | HemN family oxidoreductase; Provisional | 99.61 | |
| PRK05799 | 374 | coproporphyrinogen III oxidase; Provisional | 99.61 | |
| PRK05904 | 353 | coproporphyrinogen III oxidase; Provisional | 99.61 | |
| TIGR02666 | 334 | moaA molybdenum cofactor biosynthesis protein A, b | 99.6 | |
| PRK05628 | 375 | coproporphyrinogen III oxidase; Validated | 99.6 | |
| PRK00164 | 331 | moaA molybdenum cofactor biosynthesis protein A; R | 99.58 | |
| TIGR00538 | 455 | hemN oxygen-independent coproporphyrinogen III oxi | 99.58 | |
| PRK08446 | 350 | coproporphyrinogen III oxidase; Provisional | 99.58 | |
| PRK09249 | 453 | coproporphyrinogen III oxidase; Provisional | 99.58 | |
| TIGR00539 | 360 | hemN_rel putative oxygen-independent coproporphyri | 99.57 | |
| PRK09058 | 449 | coproporphyrinogen III oxidase; Provisional | 99.57 | |
| PLN02951 | 373 | Molybderin biosynthesis protein CNX2 | 99.56 | |
| PRK08208 | 430 | coproporphyrinogen III oxidase; Validated | 99.56 | |
| PRK13347 | 453 | coproporphyrinogen III oxidase; Provisional | 99.56 | |
| PRK07379 | 400 | coproporphyrinogen III oxidase; Provisional | 99.55 | |
| PRK09057 | 380 | coproporphyrinogen III oxidase; Provisional | 99.53 | |
| KOG4355 | 547 | consensus Predicted Fe-S oxidoreductase [General f | 99.53 | |
| PRK08898 | 394 | coproporphyrinogen III oxidase; Provisional | 99.52 | |
| TIGR02668 | 302 | moaA_archaeal probable molybdenum cofactor biosynt | 99.52 | |
| TIGR01210 | 313 | conserved hypothetical protein TIGR01210. This fam | 99.5 | |
| PRK06294 | 370 | coproporphyrinogen III oxidase; Provisional | 99.49 | |
| PRK06582 | 390 | coproporphyrinogen III oxidase; Provisional | 99.47 | |
| PRK05301 | 378 | pyrroloquinoline quinone biosynthesis protein PqqE | 99.46 | |
| PRK08629 | 433 | coproporphyrinogen III oxidase; Provisional | 99.44 | |
| COG2896 | 322 | MoaA Molybdenum cofactor biosynthesis enzyme [Coen | 99.44 | |
| COG1032 | 490 | Fe-S oxidoreductase [Energy production and convers | 99.43 | |
| TIGR01290 | 442 | nifB nitrogenase cofactor biosynthesis protein Nif | 99.41 | |
| TIGR02109 | 358 | PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. | 99.37 | |
| COG1242 | 312 | Predicted Fe-S oxidoreductase [General function pr | 99.31 | |
| COG0635 | 416 | HemN Coproporphyrinogen III oxidase and related Fe | 99.29 | |
| COG1856 | 275 | Uncharacterized homolog of biotin synthetase [Func | 99.27 | |
| TIGR02495 | 191 | NrdG2 anaerobic ribonucleoside-triphosphate reduct | 99.27 | |
| TIGR03470 | 318 | HpnH hopanoid biosynthesis associated radical SAM | 99.24 | |
| TIGR02493 | 235 | PFLA pyruvate formate-lyase 1-activating enzyme. A | 99.24 | |
| TIGR01211 | 522 | ELP3 histone acetyltransferase, ELP3 family. The S | 99.22 | |
| COG2516 | 339 | Biotin synthase-related enzyme [General function p | 99.19 | |
| PRK11145 | 246 | pflA pyruvate formate lyase-activating enzyme 1; P | 99.18 | |
| TIGR03822 | 321 | AblA_like_2 lysine-2,3-aminomutase-related protein | 99.14 | |
| PRK14456 | 368 | ribosomal RNA large subunit methyltransferase N; P | 99.11 | |
| PRK14469 | 343 | ribosomal RNA large subunit methyltransferase N; P | 99.1 | |
| PRK14463 | 349 | ribosomal RNA large subunit methyltransferase N; P | 99.1 | |
| PRK14455 | 356 | ribosomal RNA large subunit methyltransferase N; P | 99.09 | |
| COG0535 | 347 | Predicted Fe-S oxidoreductases [General function p | 99.06 | |
| TIGR03278 | 404 | methan_mark_10 putative methanogenesis marker prot | 99.03 | |
| TIGR03821 | 321 | AblA_like_1 lysine-2,3-aminomutase-related protein | 99.01 | |
| PRK14460 | 354 | ribosomal RNA large subunit methyltransferase N; P | 98.96 | |
| PRK14466 | 345 | ribosomal RNA large subunit methyltransferase N; P | 98.94 | |
| PRK14468 | 343 | ribosomal RNA large subunit methyltransferase N; P | 98.94 | |
| PRK13762 | 322 | tRNA-modifying enzyme; Provisional | 98.94 | |
| TIGR00238 | 331 | KamA family protein. Note that the E. coli homolog | 98.93 | |
| PRK14457 | 345 | ribosomal RNA large subunit methyltransferase N; P | 98.88 | |
| PRK13758 | 370 | anaerobic sulfatase-maturase; Provisional | 98.85 | |
| COG2100 | 414 | Predicted Fe-S oxidoreductase [General function pr | 98.85 | |
| PRK14470 | 336 | ribosomal RNA large subunit methyltransferase N; P | 98.84 | |
| PRK14459 | 373 | ribosomal RNA large subunit methyltransferase N; P | 98.84 | |
| TIGR00048 | 355 | radical SAM enzyme, Cfr family. A Staphylococcus s | 98.83 | |
| PRK14453 | 347 | chloramphenicol/florfenicol resistance protein; Pr | 98.75 | |
| TIGR03820 | 417 | lys_2_3_AblA lysine-2,3-aminomutase. This model de | 98.73 | |
| COG1243 | 515 | ELP3 Histone acetyltransferase [Transcription / Ch | 98.7 | |
| COG4277 | 404 | Predicted DNA-binding protein with the Helix-hairp | 98.68 | |
| COG1180 | 260 | PflA Pyruvate-formate lyase-activating enzyme [Pos | 98.62 | |
| PRK14467 | 348 | ribosomal RNA large subunit methyltransferase N; P | 98.61 | |
| COG2108 | 353 | Uncharacterized conserved protein related to pyruv | 98.6 | |
| COG1031 | 560 | Uncharacterized Fe-S oxidoreductase [Energy produc | 98.59 | |
| PRK13745 | 412 | anaerobic sulfatase-maturase; Provisional | 98.56 | |
| COG0731 | 296 | Fe-S oxidoreductases [Energy production and conver | 98.56 | |
| PRK14464 | 344 | ribosomal RNA large subunit methyltransferase N; P | 98.56 | |
| PRK14462 | 356 | ribosomal RNA large subunit methyltransferase N; P | 98.48 | |
| TIGR02494 | 295 | PFLE_PFLC glycyl-radical enzyme activating protein | 98.45 | |
| PRK11194 | 372 | ribosomal RNA large subunit methyltransferase N; P | 98.44 | |
| PRK14454 | 342 | ribosomal RNA large subunit methyltransferase N; P | 98.35 | |
| PRK14465 | 342 | ribosomal RNA large subunit methyltransferase N; P | 98.31 | |
| KOG2876 | 323 | consensus Molybdenum cofactor biosynthesis pathway | 98.3 | |
| COG1244 | 358 | Predicted Fe-S oxidoreductase [General function pr | 98.29 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 98.24 | |
| PRK14461 | 371 | ribosomal RNA large subunit methyltransferase N; P | 98.23 | |
| COG1313 | 335 | PflX Uncharacterized Fe-S protein PflX, homolog of | 98.21 | |
| PRK10076 | 213 | pyruvate formate lyase II activase; Provisional | 98.17 | |
| COG1533 | 297 | SplB DNA repair photolyase [DNA replication, recom | 98.14 | |
| COG1509 | 369 | KamA Lysine 2,3-aminomutase [Amino acid transport | 97.99 | |
| COG0641 | 378 | AslB Arylsulfatase regulator (Fe-S oxidoreductase) | 97.86 | |
| PF13353 | 139 | Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A | 97.83 | |
| TIGR03365 | 238 | Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosyn | 97.77 | |
| COG1625 | 414 | Fe-S oxidoreductase, related to NifB/MoaA family [ | 97.74 | |
| PRK05692 | 287 | hydroxymethylglutaryl-CoA lyase; Provisional | 97.62 | |
| PF13394 | 119 | Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B | 97.62 | |
| TIGR02826 | 147 | RNR_activ_nrdG3 anaerobic ribonucleoside-triphosph | 97.6 | |
| COG0820 | 349 | Predicted Fe-S-cluster redox enzyme [General funct | 97.42 | |
| cd07938 | 274 | DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, | 97.38 | |
| PLN02746 | 347 | hydroxymethylglutaryl-CoA lyase | 97.37 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 97.25 | |
| COG5014 | 228 | Predicted Fe-S oxidoreductase [General function pr | 97.23 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 97.22 | |
| cd07948 | 262 | DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s | 97.21 | |
| TIGR03279 | 433 | cyano_FeS_chp putative FeS-containing Cyanobacteri | 97.18 | |
| TIGR02090 | 363 | LEU1_arch isopropylmalate/citramalate/homocitrate | 97.18 | |
| TIGR02491 | 154 | NrdG anaerobic ribonucleoside-triphosphate reducta | 97.14 | |
| PRK11121 | 154 | nrdG anaerobic ribonucleotide reductase-activating | 97.12 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 97.04 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 96.98 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 96.94 | |
| TIGR02660 | 365 | nifV_homocitr homocitrate synthase NifV. This fami | 96.92 | |
| PRK11858 | 378 | aksA trans-homoaconitate synthase; Reviewed | 96.92 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 96.9 | |
| PRK09389 | 488 | (R)-citramalate synthase; Provisional | 96.33 | |
| PF00682 | 237 | HMGL-like: HMGL-like of this family is not conserv | 96.24 | |
| cd07945 | 280 | DRE_TIM_CMS Leptospira interrogans citramalate syn | 96.16 | |
| PRK00915 | 513 | 2-isopropylmalate synthase; Validated | 95.89 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 95.75 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 95.42 | |
| cd07941 | 273 | DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 | 95.34 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 95.15 | |
| PF04481 | 242 | DUF561: Protein of unknown function (DUF561); Inte | 95.06 | |
| TIGR01108 | 582 | oadA oxaloacetate decarboxylase alpha subunit. Thi | 95.04 | |
| COG0119 | 409 | LeuA Isopropylmalate/homocitrate/citramalate synth | 95.01 | |
| TIGR00973 | 494 | leuA_bact 2-isopropylmalate synthase, bacterial ty | 94.99 | |
| COG0602 | 212 | NrdG Organic radical activating enzymes [Posttrans | 94.95 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 94.92 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 94.59 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 94.55 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 94.43 | |
| PRK12344 | 524 | putative alpha-isopropylmalate/homocitrate synthas | 94.39 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 94.39 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 94.14 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 94.0 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 93.78 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 93.71 | |
| PLN03228 | 503 | methylthioalkylmalate synthase; Provisional | 93.6 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 93.31 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 93.2 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 93.11 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 93.07 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 92.97 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 92.92 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 92.88 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 92.83 | |
| TIGR00977 | 526 | LeuA_rel 2-isopropylmalate synthase/homocitrate sy | 92.82 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 92.61 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 92.59 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 92.32 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 92.29 | |
| PF05853 | 272 | DUF849: Prokaryotic protein of unknown function (D | 92.22 | |
| PF00834 | 201 | Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam | 92.22 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 91.83 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 91.71 | |
| cd07947 | 279 | DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synt | 91.68 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 91.56 | |
| TIGR00970 | 564 | leuA_yeast 2-isopropylmalate synthase, yeast type. | 91.45 | |
| PRK14057 | 254 | epimerase; Provisional | 91.42 | |
| cd07942 | 284 | DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and | 91.25 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 91.15 | |
| PLN02321 | 632 | 2-isopropylmalate synthase | 91.09 | |
| TIGR02146 | 344 | LysS_fung_arch homocitrate synthase. This model in | 90.92 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 90.8 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 90.71 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 90.61 | |
| COG1856 | 275 | Uncharacterized homolog of biotin synthetase [Func | 90.24 | |
| COG0685 | 291 | MetF 5,10-methylenetetrahydrofolate reductase [Ami | 90.21 | |
| PRK02227 | 238 | hypothetical protein; Provisional | 89.56 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 89.29 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 89.25 | |
| PRK08005 | 210 | epimerase; Validated | 89.25 | |
| cd00739 | 257 | DHPS DHPS subgroup of Pterin binding enzymes. DHPS | 89.15 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 89.09 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 89.06 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 88.81 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 88.81 | |
| PF04476 | 235 | DUF556: Protein of unknown function (DUF556); Inte | 88.57 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 88.45 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 88.35 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 88.33 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 88.32 | |
| cd04824 | 320 | eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthas | 88.26 | |
| PRK09283 | 323 | delta-aminolevulinic acid dehydratase; Validated | 88.26 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 88.2 | |
| TIGR01496 | 257 | DHPS dihydropteroate synthase. This model represen | 88.0 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 87.99 | |
| PF04476 | 235 | DUF556: Protein of unknown function (DUF556); Inte | 87.83 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 87.77 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 87.69 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 87.65 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 87.64 | |
| PRK11613 | 282 | folP dihydropteroate synthase; Provisional | 87.52 | |
| PRK02227 | 238 | hypothetical protein; Provisional | 87.45 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 87.44 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 87.43 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 87.37 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 87.37 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 87.18 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 87.11 | |
| KOG2535 | 554 | consensus RNA polymerase II elongator complex, sub | 86.81 | |
| cd00384 | 314 | ALAD_PBGS Porphobilinogen synthase (PBGS), which i | 86.8 | |
| PRK00043 | 212 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 86.79 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 86.76 | |
| PRK09722 | 229 | allulose-6-phosphate 3-epimerase; Provisional | 86.56 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 86.55 | |
| KOG2550 | 503 | consensus IMP dehydrogenase/GMP reductase [Nucleot | 86.15 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 85.67 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 85.63 | |
| PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 85.61 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 85.53 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 85.51 | |
| cd00429 | 211 | RPE Ribulose-5-phosphate 3-epimerase (RPE). This e | 85.08 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 84.88 | |
| TIGR00126 | 211 | deoC deoxyribose-phosphate aldolase. Deoxyribose-p | 84.77 | |
| cd00537 | 274 | MTHFR Methylenetetrahydrofolate reductase (MTHFR). | 84.38 | |
| TIGR00676 | 272 | fadh2 5,10-methylenetetrahydrofolate reductase, pr | 84.11 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 84.1 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 83.87 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 83.75 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 83.66 | |
| cd00564 | 196 | TMP_TenI Thiamine monophosphate synthase (TMP synt | 83.66 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 83.62 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 83.35 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 83.34 | |
| PRK03739 | 552 | 2-isopropylmalate synthase; Validated | 82.74 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of | 82.53 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 81.95 | |
| TIGR00677 | 281 | fadh2_euk methylenetetrahydrofolate reductase, euk | 81.86 | |
| cd02071 | 122 | MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 bin | 81.86 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called | 81.27 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 81.01 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 80.86 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 80.66 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 80.64 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 80.52 | |
| PRK02506 | 310 | dihydroorotate dehydrogenase 1A; Reviewed | 80.43 | |
| TIGR00640 | 132 | acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal | 80.37 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 80.26 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 80.16 |
| >KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-109 Score=776.74 Aligned_cols=330 Identities=58% Similarity=1.015 Sum_probs=317.6
Q ss_pred HHHHhhhCCCCccccccCCCC--CCccccccCC----CCCCCCCcceeecCCCCccHHHHHHHHhccChhhhhhhcCCCC
Q 017200 42 LRARLASESPALSDFIDLQSN--SSYSVEVGTK----KKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPN 115 (375)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~p~wl~~~~p~~~~~~~~~~~l~~~~L~tvceeA~cpn 115 (375)
|++.|+ .||+|+||++++.+ .++..+.+.+ ..++|+|+|||+++|.|+||++|+..|++++||||||||+|||
T Consensus 19 ~~~~l~-~gPs~~DFv~~d~~~~~~~~~e~~~~~~~~~~~~rlP~WLK~~iP~G~n~~~iK~~lr~l~L~TVCEEArCPN 97 (360)
T KOG2672|consen 19 FKELLA-KGPSFADFVSGDKPLRADWDFEKGRKKREGEERLRLPPWLKTKIPLGENYNKIKKDLRELKLHTVCEEARCPN 97 (360)
T ss_pred hhhhhc-cCCchhhhhcCCcccccccchhhchhhhhccccccCChhhcccCCCCccHHHHHHHHhhCchhhhhhhccCCc
Confidence 788887 99999999999764 2344433333 3578999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHH
Q 017200 116 LGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHF 195 (375)
Q Consensus 116 ~~ec~~~~~~~~~tatfm~i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~ 195 (375)
|||||||++++++|||||+|||+|+|+|+||+|+++|.|+++||.||+++|+++++||++|||||||||||++|+|++||
T Consensus 98 iGECWgG~d~~~ATATIMlmGDTCTRGCRFCsVKTsR~PpPlDp~EPeNTAeAIasWgl~YiVlTSVDRDDlpDgGa~Hi 177 (360)
T KOG2672|consen 98 IGECWGGGDKSTATATIMLMGDTCTRGCRFCSVKTSRNPPPLDPNEPENTAEAIASWGLDYIVLTSVDRDDLPDGGANHI 177 (360)
T ss_pred hhhccCCCCCcceeEEEEeecCccccCcceeeeecCCCCcCCCCCCcccHHHHHHHcCCCeEEEEecccccCcCcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCc
Q 017200 196 AQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGT 275 (375)
Q Consensus 196 ~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl 275 (375)
+++|+.||++.|.+.||+|+|||.|+.+.++.+..+|+|+|+||+|||++|.+.||+|+++|+|+|++|++||+..|. +
T Consensus 178 AkTVq~iK~k~p~ilvE~L~pDF~Gd~~~Ve~va~SGLDV~AHNvETVe~Ltp~VRD~RA~yrQSL~VLk~aK~~~P~-l 256 (360)
T KOG2672|consen 178 AKTVQKIKEKAPEILVECLTPDFRGDLKAVEKVAKSGLDVYAHNVETVEELTPFVRDPRANYRQSLSVLKHAKEVKPG-L 256 (360)
T ss_pred HHHHHHHHhhCcccchhhcCccccCchHHHHHHHhcCccceecchhhHHhcchhhcCcccchHHhHHHHHHHHhhCCC-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999997 9
Q ss_pred eEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccchhhhhh
Q 017200 276 LTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSS 355 (375)
Q Consensus 276 ~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrss 355 (375)
.++|+||+|+|||+|++.++|++||+.++|+++|||||||+++|++|.+||+|+.|++|++++.++||+|+|||||||||
T Consensus 257 itktsiMlglgetdeei~~tl~dLr~~~vdv~t~gqym~ptkrhl~v~eyvtpekf~~w~~~~~~lgf~y~AsgplvrSs 336 (360)
T KOG2672|consen 257 ITKTSIMLGLGETDEEIKQTLKDLRAADVDVVTFGQYMQPTKRHLKVKEYVTPEKFDYWKEYGEELGFLYVASGPLVRSS 336 (360)
T ss_pred eehhhhhhccCCCHHHHHHHHHHHHHcCCcEEecccccCCccccceeEEeeCHHHHHHHHHHhhhcceEEeccCceeech
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHhhhhcc
Q 017200 356 YKVVGWCYYLIFNYRSTN 373 (375)
Q Consensus 356 y~a~~~~~~~~~~~~~~~ 373 (375)
|+||||||+|+|++|+.+
T Consensus 337 ykage~~i~~~l~~r~~~ 354 (360)
T KOG2672|consen 337 YKAGEYFIKNVLEKRKSK 354 (360)
T ss_pred hhhhHHHHHHHHHhcccC
Confidence 999999999999999986
|
|
| >COG0320 LipA Lipoate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-96 Score=687.79 Aligned_cols=287 Identities=53% Similarity=0.933 Sum_probs=281.1
Q ss_pred CCCCCCCcceeecCCCCccHHHHHHHHhccChhhhhhhcCCCCcccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCC
Q 017200 73 KKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSR 152 (375)
Q Consensus 73 ~~~~~~p~wl~~~~p~~~~~~~~~~~l~~~~L~tvceeA~cpn~~ec~~~~~~~~~tatfm~i~d~C~~~C~FC~v~~~r 152 (375)
...+++|+|||+++|.|.+|.++++++++++||||||||.||||+|||+.+ |||||+||+.|||+|.||.|.+++
T Consensus 19 ~~~~rkP~Wlr~k~p~~~~~~~~k~~~r~~~L~TVCEEA~CPNi~ECw~~~-----tATFmImG~~CTR~C~FC~V~~g~ 93 (306)
T COG0320 19 EELLRKPEWLKVKAPTGSRYQEIKEILRKNGLHTVCEEASCPNIGECWSRG-----TATFMILGDICTRRCRFCDVKTGR 93 (306)
T ss_pred chhccCcHhheecCCCCchHHHHHHHHHhcCCceecccCCCCChHHHhcCC-----ceEEeeccchhccCCCccccCCCC
Confidence 456799999999999999999999999999999999999999999999988 999999999999999999999998
Q ss_pred CCCCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcC
Q 017200 153 APPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSG 232 (375)
Q Consensus 153 ~~~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aG 232 (375)
|.++|++||.++|++++.+|++|||||||+||||+|||+.||+++|++|++.+|++.||+|+|||.|+.+.|+.+.++|
T Consensus 94 -P~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ire~~P~t~iEvL~PDF~G~~~al~~v~~~~ 172 (306)
T COG0320 94 -PNPLDPDEPERVAEAVKDMGLKYVVITSVDRDDLPDGGAQHFAECIRAIRELNPQTTIEVLTPDFRGNDDALEIVADAG 172 (306)
T ss_pred -CCCCCCchHHHHHHHHHHhCCCeEEEEeeccccccccchHHHHHHHHHHHhhCCCceEEEeCccccCCHHHHHHHHhcC
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecC
Q 017200 233 LNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQY 312 (375)
Q Consensus 233 ldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qY 312 (375)
+|+|+||+|||+++|++|| ++++|+++|++|+.+|+..|. +.|||+||||||||++|++++|++||+.|||+++||||
T Consensus 173 pdV~nHNvETVprL~~~VR-p~A~Y~~SL~~L~~~k~~~P~-i~TKSgiMlGLGEt~~Ev~e~m~DLr~~gvdilTiGQY 250 (306)
T COG0320 173 PDVFNHNVETVPRLYPRVR-PGATYERSLSLLERAKELGPD-IPTKSGLMVGLGETDEEVIEVMDDLRSAGVDILTIGQY 250 (306)
T ss_pred cchhhcccccchhcccccC-CCCcHHHHHHHHHHHHHhCCC-cccccceeeecCCcHHHHHHHHHHHHHcCCCEEEeccc
Confidence 9999999999999999999 799999999999999999998 99999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccchhhhhhcchhHHHHHHHH
Q 017200 313 MRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKVVGWCYYLIF 367 (375)
Q Consensus 313 l~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrssy~a~~~~~~~~~ 367 (375)
|||+.+|+||.+||+|++|++|+++|.+|||.+|+|||||||||||||.|..+..
T Consensus 251 lqPS~~HlpV~ryv~PeeF~~~~~~a~~~GF~~v~sgPlvRSSYhA~~~~~~~~~ 305 (306)
T COG0320 251 LQPSRKHLPVQRYVTPEEFDELEEVAEEMGFLHVASGPLVRSSYHADEQFAEAEV 305 (306)
T ss_pred cCCccccCCceeccCHHHHHHHHHHHHHccchhhccCcccccccchHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999988764
|
|
| >PTZ00413 lipoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-91 Score=691.01 Aligned_cols=337 Identities=50% Similarity=0.866 Sum_probs=310.3
Q ss_pred cchHHHHHHhhhC---CCCccccccCCCCCCcccc--ccCCCCCCCCCcceeecCCCCc----cHHHHHHHHhccChhhh
Q 017200 37 QTLAGLRARLASE---SPALSDFIDLQSNSSYSVE--VGTKKKPLPKPKWMKESIPGGD----KYVQIKKKLRELKLHTV 107 (375)
Q Consensus 37 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~wl~~~~p~~~----~~~~~~~~l~~~~L~tv 107 (375)
..+..|+++++++ +|+|.+|+.......++.. ..-++...++|+|||+++|.|+ +|.+++++|++++||||
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~kP~Wlk~~~~~~~~~~~~~~~~~~~~~~~~L~TV 126 (398)
T PTZ00413 47 IFLERFRERLNSDKTGKNSLEGFVDLPEGLKPSAASIGPIKRGEEPLPPWFKVKVPKGASRRPRFNRIRRSMREKKLHTV 126 (398)
T ss_pred HHHHHHHHhhhcccccCCchhhhhcCccccccccccCCCccCCCCCCCcceeecCCCCccccchHHHHHHHHHhCCCcee
Confidence 3478899999733 3799999976544333221 1334456799999999999998 99999999999999999
Q ss_pred hhhcCCCCcccccCCC-CCCccEEEEeeeCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHhcCCcEEEEEeeeCCC
Q 017200 108 CEEAKCPNLGECWSGG-ETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDD 186 (375)
Q Consensus 108 ceeA~cpn~~ec~~~~-~~~~~tatfm~i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~d 186 (375)
||||+||||+|||++| ++|++|||||+|||.|+++|+||++++...|..+|++||.+.|+++.++|++|+|||||+|||
T Consensus 127 Ceea~CPNi~EC~~~~~~~~~~tATfmilG~~CTr~C~FCaqstg~~p~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDD 206 (398)
T PTZ00413 127 CEEAKCPNIGECWGGGDEEGTATATIMVMGDHCTRGCRFCSVKTSRKPPPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDD 206 (398)
T ss_pred eCCCCCCChHHHhCCCCCCCCceeEeeecCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCC
Confidence 9999999999999975 678999999999999999999999998664567999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHH
Q 017200 187 LADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMM 266 (375)
Q Consensus 187 l~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ 266 (375)
++|+|++||+++|+.|++..|++.|++++|||.|+.+.++.|+++|+|+|+||+||++++|+.||+++++|+++|++|+.
T Consensus 207 L~D~ga~~~a~~I~~Ir~~~p~~~IevligDf~g~~e~l~~L~eAG~dvynHNLETv~rLyp~VRt~~atYe~sLe~Lr~ 286 (398)
T PTZ00413 207 LPDGGASHVARCVELIKESNPELLLEALVGDFHGDLKSVEKLANSPLSVYAHNIECVERITPYVRDRRASYRQSLKVLEH 286 (398)
T ss_pred CChhhHHHHHHHHHHHHccCCCCeEEEcCCccccCHHHHHHHHhcCCCEEecccccCHhHHHHHccCcCCHHHHHHHHHH
Confidence 99999999999999999988999999999999999999999999999999999999999999999657999999999999
Q ss_pred HHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 267 AKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 267 ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
+++.++.|+.|||++|||||||++|++++|++|+++|+|+++|||||||+++|+||.+||+|++|++|+++|.+|||.+|
T Consensus 287 AKe~f~~gi~tcSGiIVGLGET~eEvie~m~dLrelGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~v 366 (398)
T PTZ00413 287 VKEFTNGAMLTKSSIMLGLGETEEEVRQTLRDLRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYC 366 (398)
T ss_pred HHHHhcCCceEeeeeEecCCCCHHHHHHHHHHHHHcCCcEEeeccccCCCcccCCceeccCHHHHHHHHHHHHHcCCceE
Confidence 99975457999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhcchhHHHHHHHHhhhhcc
Q 017200 347 ASGPMVRSSYKVVGWCYYLIFNYRSTN 373 (375)
Q Consensus 347 ~sgp~vrssy~a~~~~~~~~~~~~~~~ 373 (375)
+|||||||||||+|+|+++++++|++.
T Consensus 367 ~sgPlVRSSY~A~e~~~~~~~~~r~~~ 393 (398)
T PTZ00413 367 ASGPLVRSSYRAGEYYIKNLVKQRRKA 393 (398)
T ss_pred EecCccccchhccHHHHHHHHHhhhhh
Confidence 999999999999999999999999863
|
|
| >PLN02428 lipoic acid synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-88 Score=665.46 Aligned_cols=335 Identities=71% Similarity=1.157 Sum_probs=314.3
Q ss_pred CcchHHHHHHhhhCCCCccccccCCCCCCccccccCCCCCCCCCcceeecCCCCccHHHHHHHHhccChhhhhhhcCCCC
Q 017200 36 PQTLAGLRARLASESPALSDFIDLQSNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPN 115 (375)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~wl~~~~p~~~~~~~~~~~l~~~~L~tvceeA~cpn 115 (375)
.+.++.|+.+++..||+|+||++.... ..+.+.+....++|+|||+++|.|++|.+++++|++++||||||||+|||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~wl~~~~~~~~~~~~~~~~~~~~~l~tvc~~a~cpn 88 (349)
T PLN02428 12 PQTLAALRARLASESPSLGDFVSLGPY---TLGSYGRDKPLPKPKWLRQRAPGGEKYTEIKEKLRELKLNTVCEEAQCPN 88 (349)
T ss_pred cchhhHHHHhhccCCCchHhhhcCCcc---cccccccCCCCCCCcceeecCCCCchHHHHHHHHHHCCCceeecCCCCCC
Confidence 344888999999899999999985322 12233445567899999999999999999999999999999999999999
Q ss_pred cccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHH
Q 017200 116 LGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHF 195 (375)
Q Consensus 116 ~~ec~~~~~~~~~tatfm~i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~ 195 (375)
++|||++|+++.+|+|||++||+|+++|+||++++.+++...+++||+++|+++.++|+++|+||||++||++|+|+++|
T Consensus 89 ~~ec~~~~~~~~~taT~milg~gCtr~CrFCav~~~~~p~~~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~~~ 168 (349)
T PLN02428 89 IGECWNGGGTGTATATIMILGDTCTRGCRFCAVKTSRTPPPPDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSGHF 168 (349)
T ss_pred hHHhhCCCCCCCceEEEEEecCCCCCCCCCCcCCCCCCCCCCChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHHHH
Confidence 99999999899999999999999999999999998776667889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCc
Q 017200 196 AQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGT 275 (375)
Q Consensus 196 ~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl 275 (375)
+++++.|++..|.++|++++|||.++.+.|+.|+++|+|+|+||+||++++|+.|++++++|++++++++.|++.+| |+
T Consensus 169 ~elir~Ir~~~P~i~Ie~L~pdf~~d~elL~~L~eAG~d~i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~p-Gi 247 (349)
T PLN02428 169 AETVRRLKQLKPEILVEALVPDFRGDLGAVETVATSGLDVFAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKP-GL 247 (349)
T ss_pred HHHHHHHHHhCCCcEEEEeCccccCCHHHHHHHHHcCCCEEccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCC-CC
Confidence 99999999999999999999999999999999999999999999999999999999668999999999999999876 59
Q ss_pred eEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccchhhhhh
Q 017200 276 LTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSS 355 (375)
Q Consensus 276 ~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrss 355 (375)
.++++||+|||||+||+++++++|+++++|+++||||+||++.|++|.+||+|++|++|+++|.++||.+|+||||||||
T Consensus 248 ~tkSg~MvGLGET~Edv~e~l~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vrss 327 (349)
T PLN02428 248 LTKTSIMLGLGETDEEVVQTMEDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVRSS 327 (349)
T ss_pred eEEEeEEEecCCCHHHHHHHHHHHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHhhhhccC
Q 017200 356 YKVVGWCYYLIFNYRSTNA 374 (375)
Q Consensus 356 y~a~~~~~~~~~~~~~~~~ 374 (375)
|||+|.|+++++++|+++.
T Consensus 328 y~a~~~~~~~~~~~~~~~~ 346 (349)
T PLN02428 328 YKAGEFFIKSMIREDRAKA 346 (349)
T ss_pred hhhHHHHHHHHHHhhcccc
Confidence 9999999999999998753
|
|
| >TIGR00510 lipA lipoate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-83 Score=626.45 Aligned_cols=294 Identities=49% Similarity=0.856 Sum_probs=283.2
Q ss_pred cCCCCCCCCCcceeecCCCCccHHHHHHHHhccChhhhhhhcCCCCcccccCCCCCCccEEEEeeeCCccCCCCcCCCCC
Q 017200 70 GTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVK 149 (375)
Q Consensus 70 ~~~~~~~~~p~wl~~~~p~~~~~~~~~~~l~~~~L~tvceeA~cpn~~ec~~~~~~~~~tatfm~i~d~C~~~C~FC~v~ 149 (375)
.++....++|+|||+++|.|++|.+++++|++++||||||||+|||++|||+++ |+|||++||+|+++|+||+++
T Consensus 9 ~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~l~tvc~~a~cpn~~ec~~~~-----tatfm~i~~gC~~~C~FC~v~ 83 (302)
T TIGR00510 9 PNKEILLRKPEWLKIKLPLGTVIAQIKNTMKNKGLHTVCEEASCPNLTECWNHG-----TATFMILGDICTRRCPFCDVA 83 (302)
T ss_pred cccCccCCCCcceEecCCCCchHHHHHHHHHHCCCceeecCCCCCCcccccCCC-----EEEEEecCcCcCCCCCcCCcc
Confidence 455667889999999999999999999999999999999999999999999988 999999999999999999999
Q ss_pred CCCCCCCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHH
Q 017200 150 TSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVA 229 (375)
Q Consensus 150 ~~r~~~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~ 229 (375)
+.+++...+++||+++|++++++|++||+||||+++|++|+|..+|+++|++|++..|++.|++++||+.++.+.++.|+
T Consensus 84 ~~rg~~~~~~eei~~~a~~~~~~GlkevvLTsv~~ddl~d~g~~~l~~li~~I~~~~p~i~Ievl~~d~~g~~e~l~~l~ 163 (302)
T TIGR00510 84 HGRNPLPPDPEEPAKLAETIKDMGLKYVVITSVDRDDLEDGGASHLAECIEAIREKLPNIKIETLVPDFRGNIAALDILL 163 (302)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeecCCCcccccHHHHHHHHHHHHhcCCCCEEEEeCCcccCCHHHHHHHH
Confidence 88766667899999999999999999999999999999998899999999999998899999999999988899999999
Q ss_pred HcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 017200 230 KSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 230 ~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i 309 (375)
++|+|+++||+||++++|++|| ++++|++++++++.+++..|+ +.++|+||||||||+||++++|++|+++|++.+++
T Consensus 164 ~aG~dv~~hnlEt~~~l~~~vr-r~~t~e~~Le~l~~ak~~~pg-i~~~TgiIVGlGETeee~~etl~~Lrelg~d~v~i 241 (302)
T TIGR00510 164 DAPPDVYNHNLETVERLTPFVR-PGATYRWSLKLLERAKEYLPN-LPTKSGIMVGLGETNEEIKQTLKDLRDHGVTMVTL 241 (302)
T ss_pred HcCchhhcccccchHHHHHHhC-CCCCHHHHHHHHHHHHHhCCC-CeecceEEEECCCCHHHHHHHHHHHHhcCCCEEEe
Confidence 9999999999999999999999 799999999999999998875 99999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccchhhhhhcchhHHHHHHHHhhh
Q 017200 310 GQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKVVGWCYYLIFNYR 370 (375)
Q Consensus 310 ~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrssy~a~~~~~~~~~~~~ 370 (375)
|||+||+++|+||.+|++|++|+.|+++|.+|||.+|+|||||||||||+|.|+++++++|
T Consensus 242 gqYl~p~~~~~~v~~~~~p~~f~~~~~~a~~~gf~~v~~~p~vrssy~a~~~~~~~~~~~~ 302 (302)
T TIGR00510 242 GQYLRPSRRHLPVKRYVSPEEFDYYRSVALEMGFLHAACGPFVRSSYHADSLFAAGRLVKT 302 (302)
T ss_pred ecccCCCCCCCccccCCCHHHHHHHHHHHHHcCChheEecccchhhhhHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999999999999999999875
|
The family shows strong sequence conservation. |
| >PRK12928 lipoyl synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-75 Score=569.01 Aligned_cols=281 Identities=47% Similarity=0.824 Sum_probs=269.9
Q ss_pred CCCCCCCcceeecCCCCccHHHHHHHHhccChhhhhhhcCCCCcccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCC
Q 017200 73 KKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSR 152 (375)
Q Consensus 73 ~~~~~~p~wl~~~~p~~~~~~~~~~~l~~~~L~tvceeA~cpn~~ec~~~~~~~~~tatfm~i~d~C~~~C~FC~v~~~r 152 (375)
....++|+|||+++|.|++|.+++.++++++|||||++|+|||+++||+++ ++|||++||+|+++|+||++++++
T Consensus 9 ~~~~~~p~w~~~~~~~~~~~~~~~~l~~~~~l~tv~~~A~~~~~~~~~~~~-----~~tfv~is~gC~~~C~FCa~~~g~ 83 (290)
T PRK12928 9 IPVERLPEWLRAPIGKASELETVQRLVKQRRLHTICEEARCPNRGECYAQG-----TATFLIMGSICTRRCAFCQVDKGR 83 (290)
T ss_pred CCCCCCCcceeecCCCChhHHHHHHHHHcCCHHHHHHHhCCCcccccCCCC-----EEEEEEecccccCcCCCCCccCCC
Confidence 456799999999999999999999999999999999999999999999887 999999999999999999999865
Q ss_pred CCCCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCC-ChHHHHHHHHc
Q 017200 153 APPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG-NNGCVREVAKS 231 (375)
Q Consensus 153 ~~~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g-~~e~l~~L~~a 231 (375)
+.+++++||+++|++++++|++||+||||+++|++|+|..+|.++++.|++..|.++|++++|++.+ ..+.|..|+++
T Consensus 84 -~~~~~~eei~~~a~~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~~~I~~ltp~~~~~~~e~L~~l~~A 162 (290)
T PRK12928 84 -PMPLDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGTGIEVLTPDFWGGQRERLATVLAA 162 (290)
T ss_pred -CCCCCHHHHHHHHHHHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCCCEEEEeccccccCCHHHHHHHHHc
Confidence 5679999999999999999999999999999999998899999999999999999999999999987 78899999999
Q ss_pred CcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeec
Q 017200 232 GLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 311 (375)
Q Consensus 232 Gldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~q 311 (375)
|+++++||+||++++++.|+ +++++++|+++++.|++..|. +.++|+||+|||||+||++++|++|+++++|.+++||
T Consensus 163 g~~i~~hnlEt~~~vl~~m~-r~~t~e~~le~l~~ak~~gp~-i~~~s~iIvG~GET~ed~~etl~~Lrel~~d~v~i~~ 240 (290)
T PRK12928 163 KPDVFNHNLETVPRLQKAVR-RGADYQRSLDLLARAKELAPD-IPTKSGLMLGLGETEDEVIETLRDLRAVGCDRLTIGQ 240 (290)
T ss_pred CchhhcccCcCcHHHHHHhC-CCCCHHHHHHHHHHHHHhCCC-ceecccEEEeCCCCHHHHHHHHHHHHhcCCCEEEEEc
Confidence 99999999999999999999 789999999999999998765 9999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccchhhhhhcchhHH
Q 017200 312 YMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKVVGW 361 (375)
Q Consensus 312 Yl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrssy~a~~~ 361 (375)
|+||+.+|+||.+||+|++|+.|+++|.++||.+|+|||||||||||+|.
T Consensus 241 Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~~~~p~~rssy~a~~~ 290 (290)
T PRK12928 241 YLRPSLAHLPVQRYWTPEEFEALGQIARELGFSHVRSGPLVRSSYHAGEQ 290 (290)
T ss_pred CCCCCccCCceeeccCHHHHHHHHHHHHHcCCceeEecCcccccccCCCC
Confidence 99999999999999999999999999999999999999999999999973
|
|
| >PRK05481 lipoyl synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-64 Score=488.90 Aligned_cols=282 Identities=54% Similarity=0.962 Sum_probs=266.9
Q ss_pred CCCCCcceeecCCCCccHHHHHHHHhccChhhhhhhcCCCCcccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCCCC
Q 017200 75 PLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAP 154 (375)
Q Consensus 75 ~~~~p~wl~~~~p~~~~~~~~~~~l~~~~L~tvceeA~cpn~~ec~~~~~~~~~tatfm~i~d~C~~~C~FC~v~~~r~~ 154 (375)
..++|+|||+++|.+++|+++..++++.+|+|||++|+|||+.+||+++ ++|||+++|+|+++|+||+++..+ +
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~a~~~~~~~~~~~~-----~~~fi~is~GC~~~C~FC~i~~~r-~ 77 (289)
T PRK05481 4 VARKPDWLRVKLPTGEEYTEIKKLLRELGLHTVCEEASCPNIGECWSRG-----TATFMILGDICTRRCPFCDVATGR-P 77 (289)
T ss_pred CCCCCcceeecCCCChhHHHHHHHHHhCChHHHHHhhCCCcchhccCCC-----eEEEEEecccccCCCCCceeCCCC-C
Confidence 4579999999999999999999999999999999999999999999877 999999999999999999999877 4
Q ss_pred CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcc
Q 017200 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLN 234 (375)
Q Consensus 155 ~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (375)
.+++++||+++++.+++.|+++|+||||+++|+++.|..+|+++++.|++..|+++|++++|++....+.+..++++|++
T Consensus 78 ~s~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d~~~~~~~~l~~Ll~~I~~~~p~irI~~l~~~~~~~~e~L~~l~~ag~~ 157 (289)
T PRK05481 78 LPLDPDEPERVAEAVARMGLKYVVITSVDRDDLPDGGAQHFAETIRAIRELNPGTTIEVLIPDFRGRMDALLTVLDARPD 157 (289)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEEeeCCCcccccHHHHHHHHHHHHhhCCCcEEEEEccCCCCCHHHHHHHHhcCcc
Confidence 56999999999999999999999999999888876667899999999999889999999999887778999999999999
Q ss_pred cccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCC
Q 017200 235 VFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMR 314 (375)
Q Consensus 235 v~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~ 314 (375)
+++|++|++++++++|+ |++++++|+++++.+++.+|+ +.++|+||+|||||+||+.++|++|+++++|.+++|+|++
T Consensus 158 i~~~~~ets~~vlk~m~-r~~t~e~~le~i~~ar~~~pg-i~~~t~~IvGfGET~ed~~~tl~~lrel~~d~v~if~Ys~ 235 (289)
T PRK05481 158 VFNHNLETVPRLYKRVR-PGADYERSLELLKRAKELHPG-IPTKSGLMVGLGETDEEVLEVMDDLRAAGVDILTIGQYLQ 235 (289)
T ss_pred eeeccccChHHHHHHhC-CCCCHHHHHHHHHHHHHhCCC-CeEeeeeEEECCCCHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence 99999999999999999 799999999999999998875 9999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccchhhhhhcchhHHHHH
Q 017200 315 PSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKVVGWCYY 364 (375)
Q Consensus 315 P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrssy~a~~~~~~ 364 (375)
|..++++|.++++++++++|.+++.++||.+|+|||+|||||+|+++|..
T Consensus 236 pa~k~~~v~~~~k~~r~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 285 (289)
T PRK05481 236 PSRKHLPVERYVTPEEFDEYKEIALELGFLHVASGPLVRSSYHADEQAAG 285 (289)
T ss_pred CccccCCCCCcCCHHHHHHHHHHHHHcCchheEecCccccchhhHHHHhh
Confidence 97768899999999999999999999999999999999999999997543
|
|
| >PRK08444 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-31 Score=263.47 Aligned_cols=240 Identities=15% Similarity=0.251 Sum_probs=194.6
Q ss_pred ccHHHHHHHHhccChhhhhhhcCCCCcccccCCCCCCccEEEEe-----eeCCccCCCCcCCCCCCCCC-C--CCCCcch
Q 017200 90 DKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIM-----ILGDTCTRGCRFCNVKTSRA-P--PPPDPDE 161 (375)
Q Consensus 90 ~~~~~~~~~l~~~~L~tvceeA~cpn~~ec~~~~~~~~~tatfm-----~i~d~C~~~C~FC~v~~~r~-~--~~ld~eE 161 (375)
-+.++...++. .+|..+++.|+-.+... + |+ +++|. .++|.|..+|.||+|+...+ + ..+++||
T Consensus 13 ls~eeal~Ll~-~dl~~L~~~A~~vR~~~-~-G~-----~Vt~~~n~~In~TN~C~~~C~FCaf~~~~~~~~~y~ls~ee 84 (353)
T PRK08444 13 LNQEEAVKLYD-LDLFTLGKYADKKRTKL-H-GK-----KVYFNVNRHINPTNICADVCKFCAFSAHRKNPNPYTMSHEE 84 (353)
T ss_pred CCHHHHHHHhh-cCHHHHHHHHHHHHHHh-c-CC-----EEEEEecCCcccccccccCCccCCCccCCCCCccccCCHHH
Confidence 34677777774 48999999998777653 2 43 66665 46999999999999987432 2 2389999
Q ss_pred HHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCC---------CCChHHHHHHHHcC
Q 017200 162 PTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF---------RGNNGCVREVAKSG 232 (375)
Q Consensus 162 i~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~---------~g~~e~l~~L~~aG 232 (375)
+++.|+++++.|+++++|+||.+++++ .++|.++++.||+.+|++.|++++|.- ....|.+..|+++|
T Consensus 85 I~~~a~~a~~~G~~ei~iv~G~~p~~~---~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAG 161 (353)
T PRK08444 85 ILEIVKNSVKRGIKEVHIVSAHNPNYG---YEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYG 161 (353)
T ss_pred HHHHHHHHHHCCCCEEEEeccCCCCCC---HHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 999999999999999999999888764 789999999999999999999977631 11479999999999
Q ss_pred ccccccc-ccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 233 LNVFAHN-IET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 233 ldv~~hn-lEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
+|.++|+ .|+ ++++++.|+|.+.+.++|+++++.||+ .|+.++|+||+|+|||.||++++|..||++|++.++|.
T Consensus 162 l~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~---~Gi~~~sg~l~G~gEt~edrv~hl~~Lr~Lq~~t~gf~ 238 (353)
T PRK08444 162 VDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHK---KGKMSNATMLFGHIENREHRIDHMLRLRDLQDKTGGFN 238 (353)
T ss_pred cccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHH---cCCCccceeEEecCCCHHHHHHHHHHHHHhccccCCce
Confidence 9999995 897 579999999767777999999999999 68999999999999999999999999999999877774
Q ss_pred cCCCCC---CCCCCccccCCHHHHHHHHHHHHHhhhh
Q 017200 311 QYMRPS---KRHMPVSEYITPEAFERYRALGMEMGFR 344 (375)
Q Consensus 311 qYl~P~---~~~~~v~~~v~pe~~~~l~~~a~~~gf~ 344 (375)
.|. |. +.++|+.....+...+.|+.+|..+=++
T Consensus 239 ~fI-p~~f~~~~t~l~~~~~~~~~e~Lr~iAi~Rl~L 274 (353)
T PRK08444 239 AFI-PLVYQRENNYLKVEKFPSSQEILKTIAISRILL 274 (353)
T ss_pred EEE-ecccCCCCCcCCCCCCCCHHHHHHHHHHHHHhc
Confidence 332 31 1345555443455678888888875443
|
|
| >PRK05927 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-30 Score=257.49 Aligned_cols=246 Identities=14% Similarity=0.202 Sum_probs=193.6
Q ss_pred CCCCccHHHHHHHHhccChhhhhhhcCCCCcccccCCCCCCccEEEEee-----eCCccCCCCcCCCCCCCC-CCC--CC
Q 017200 86 IPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMI-----LGDTCTRGCRFCNVKTSR-APP--PP 157 (375)
Q Consensus 86 ~p~~~~~~~~~~~l~~~~L~tvceeA~cpn~~ec~~~~~~~~~tatfm~-----i~d~C~~~C~FC~v~~~r-~~~--~l 157 (375)
+|..-..+++..++...+|..+++.|+-.+.. .++|. .++|++ ++|.|+.+|.||+++... .+. .+
T Consensus 3 ~~~~is~ee~l~L~~~~~l~~L~~~A~~iR~~-~~~G~-----~V~~i~n~~i~~Tn~C~~~C~fCaf~~~~~~~~~y~l 76 (350)
T PRK05927 3 LPARISFQEGLELFLYSPLEELQEHADSLRKQ-RYPQN-----TVTYVLDANPNYTNICKIDCTFCAFYRKPHSSDAYLL 76 (350)
T ss_pred CccCCCHHHHHHHhcCCCHHHHHHHHHHHHHH-HcCCC-----eEEEEcccCCccchhhhcCCccCCccCCCCCcccccc
Confidence 45566788888899888999999999876654 34343 677763 499999999999998742 222 38
Q ss_pred CcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCC-------CC--ChHHHHHH
Q 017200 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF-------RG--NNGCVREV 228 (375)
Q Consensus 158 d~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~-------~g--~~e~l~~L 228 (375)
+++|+++.++++.+.|+++++||||.+++++ .++++++++.||+.+|++.+.+++|.- .| ..|.++.|
T Consensus 77 s~eei~~~a~~~~~~G~~~i~i~gG~~p~~~---~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G~~~~e~l~~L 153 (350)
T PRK05927 77 SFDEFRSLMQRYVSAGVKTVLLQGGVHPQLG---IDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSGISTEQALERL 153 (350)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCCCCC---HHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 9999999999999999999999999987754 899999999999999999887776621 12 58999999
Q ss_pred HHcCcccccc-cccchH-HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcE
Q 017200 229 AKSGLNVFAH-NIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDV 306 (375)
Q Consensus 229 ~~aGldv~~h-nlEtv~-rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~ 306 (375)
+++|++.++| |+|+.+ ++++.++|.+.++++|+++++.||+ .|+.++|+||+|+|||.+|++++|..||+++.++
T Consensus 154 k~aGl~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~~---lGi~~~sg~l~G~gEt~e~ri~~l~~Lr~lqd~~ 230 (350)
T PRK05927 154 WDAGQRTIPGGGAEILSERVRKIISPKKMGPDGWIQFHKLAHR---LGFRSTATMMFGHVESPEDILLHLQTLRDAQDEN 230 (350)
T ss_pred HHcCcccCCCCCchhCCHHHhhccCCCCCCHHHHHHHHHHHHH---cCCCcCceeEEeeCCCHHHHHHHHHHHHHhhHhh
Confidence 9999999999 899876 7777777656678999999999999 5899999999999999999999999999999654
Q ss_pred EeeecCC--CCCCCCCCccccC--CHHHHHHHHHHHHHhhh
Q 017200 307 MTFGQYM--RPSKRHMPVSEYI--TPEAFERYRALGMEMGF 343 (375)
Q Consensus 307 v~i~qYl--~P~~~~~~v~~~v--~pe~~~~l~~~a~~~gf 343 (375)
-+|..|+ .+.+..+|+.... .+...+.|+.+|..+=+
T Consensus 231 ~gf~~fIp~~~~~~~tpl~~~~~~~~s~~e~Lr~iAv~Rl~ 271 (350)
T PRK05927 231 PGFYSFIPWSYKPGNTALGRRVPHQASPELYYRILAVARIF 271 (350)
T ss_pred CCeeeeeecCcCCCCCccccCCCCCCCHHHHHHHHHHHHHh
Confidence 4443332 1112345543221 24456778888777543
|
|
| >COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=257.55 Aligned_cols=212 Identities=18% Similarity=0.350 Sum_probs=176.1
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCC-Cccc--HHHHHHHHHHHHH
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDL-ADQG--SGHFAQTVRKLKE 204 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~~-~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl-~d~G--~~~~~~lir~Ik~ 204 (375)
+.+|+.+++||+++|+||++|..|+.. +.++++|+++++.+++.|++||+|||+|-..| .|.| ...|+++++.|.+
T Consensus 144 ~~A~v~I~eGCn~~CtfCiiP~~RG~~rSr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~ 223 (437)
T COG0621 144 VRAFVKIQEGCNKFCTFCIIPYARGKERSRPPEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLLRELSK 223 (437)
T ss_pred eEEEEEhhcCcCCCCCeeeeeccCCCccCCCHHHHHHHHHHHHHCCCeEEEEEEEehhhccccCCCCccCHHHHHHHHhc
Confidence 899999999999999999999988754 69999999999999999999999999985544 2322 4569999999988
Q ss_pred hCCC---cEEEeecCCCCCChHHHHHHHHcCccccccc---c-cchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceE
Q 017200 205 LKPN---MLIEALVPDFRGNNGCVREVAKSGLNVFAHN---I-ETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLT 277 (375)
Q Consensus 205 ~~p~---i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn---l-Etv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~t 277 (375)
.|+ +++..+.|.-. +++.++.+.+ +..+++|- + ..++++++.|+ |+|+.++++++++.+|+..|+ +.+
T Consensus 224 -I~G~~riR~~~~~P~~~-~d~lI~~~~~-~~kv~~~lHlPvQsGsd~ILk~M~-R~yt~e~~~~~i~k~R~~~Pd-~~i 298 (437)
T COG0621 224 -IPGIERIRFGSSHPLEF-TDDLIEAIAE-TPKVCPHLHLPVQSGSDRILKRMK-RGYTVEEYLEIIEKLRAARPD-IAI 298 (437)
T ss_pred -CCCceEEEEecCCchhc-CHHHHHHHhc-CCcccccccCccccCCHHHHHHhC-CCcCHHHHHHHHHHHHHhCCC-ceE
Confidence 443 44445666322 5666666655 45788775 3 46889999999 999999999999999999998 999
Q ss_pred EEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCC----CCccccCCHHHHHHHHHHHHHhhhhh
Q 017200 278 KTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRH----MPVSEYITPEAFERYRALGMEMGFRY 345 (375)
Q Consensus 278 kt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~----~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (375)
.|+||||| |||+|||.+||++++++++|.+++|+|+ ||+++. -+|.+.|..++.++|++++.+....+
T Consensus 299 ~tDiIVGFPgETeedFe~tl~lv~e~~fd~~~~F~YSpRpGTpAa~~~~qvp~~vkkeR~~~L~~l~~~~~~~~ 372 (437)
T COG0621 299 STDIIVGFPGETEEDFEETLDLVEEVRFDRLHVFKYSPRPGTPAALMPDQVPEEVKKERLRRLQELQQQISAEF 372 (437)
T ss_pred eccEEEECCCCCHHHHHHHHHHHHHhCCCEEeeeecCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999997 665432 24666677889999999888876654
|
|
| >TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-30 Score=254.31 Aligned_cols=237 Identities=18% Similarity=0.289 Sum_probs=192.0
Q ss_pred ccHHHHHHHHhccChhhhhhhcCCCCcccccCCCCCCccEEEE-----eeeCCccCCCCcCCCCCCCCC-CC--CCCcch
Q 017200 90 DKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATI-----MILGDTCTRGCRFCNVKTSRA-PP--PPDPDE 161 (375)
Q Consensus 90 ~~~~~~~~~l~~~~L~tvceeA~cpn~~ec~~~~~~~~~tatf-----m~i~d~C~~~C~FC~v~~~r~-~~--~ld~eE 161 (375)
-+.+++..+|...++..+++.|+-.+... +|+ .++| +..+|+|+++|.||+++...+ +. .+++||
T Consensus 11 ls~~e~~~L~~~~~~~~L~~~A~~vr~~~-~g~------~v~~~~~~~in~Tn~C~~~C~FCa~~~~~~~~~~y~l~~ee 83 (351)
T TIGR03700 11 LSFEDGLFLYASDDLLTLGELAALVRERK-HGD------KVYFNVNRHLNYTNICVNGCAFCAFQRERGEPGAYAMSLEE 83 (351)
T ss_pred CCHHHHHHHcCCCcHHHHHHHHHHHHHHh-cCC------eEEEeccCCcccccccccCCccCceeCCCCCcccCCCCHHH
Confidence 34677888888778999999998776543 333 4555 446999999999999987432 22 389999
Q ss_pred HHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCC-------CCC--ChHHHHHHHHcC
Q 017200 162 PTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPD-------FRG--NNGCVREVAKSG 232 (375)
Q Consensus 162 i~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd-------~~g--~~e~l~~L~~aG 232 (375)
+++.++++.+.|+++|+|+||++++++ .+++.++++.||+.+|++.+++++|. ..| +.+.++.|+++|
T Consensus 84 I~~~a~~~~~~G~~~v~l~~G~~p~~~---~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~LkeAG 160 (351)
T TIGR03700 84 IVARVKEAYAPGATEVHIVGGLHPNLP---FEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDELKEAG 160 (351)
T ss_pred HHHHHHHHHHCCCcEEEEecCCCCCCC---HHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 999999999999999999999888764 78999999999999999999987763 112 477899999999
Q ss_pred cccccc-cccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcE----
Q 017200 233 LNVFAH-NIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDV---- 306 (375)
Q Consensus 233 ldv~~h-nlEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~---- 306 (375)
+|.++| ++|+ .+++++++++.+.++++|+++++.|++ .|+.++++||+|+|||++|+++++..|++++++.
T Consensus 161 ld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~---~Gi~~~sg~i~GlgEt~edrv~~l~~Lr~l~~~~~~f~ 237 (351)
T TIGR03700 161 LDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHE---LGLKTNATMLYGHIETPAHRVDHMLRLRELQDETGGFQ 237 (351)
T ss_pred CCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHH---cCCCcceEEEeeCCCCHHHHHHHHHHHHHhhHhhCCce
Confidence 999998 6998 579999999656788999999999999 5899999999999999999999999999999865
Q ss_pred --EeeecCCCCCCCCCCcccc--CCHHHHHHHHHHHHHhhh
Q 017200 307 --MTFGQYMRPSKRHMPVSEY--ITPEAFERYRALGMEMGF 343 (375)
Q Consensus 307 --v~i~qYl~P~~~~~~v~~~--v~pe~~~~l~~~a~~~gf 343 (375)
|++ +|. | .++|+... ..+...+.|+.+|..+=+
T Consensus 238 ~fiP~-~f~-~--~~tpl~~~~~~~~~~~e~lr~iA~~Rl~ 274 (351)
T TIGR03700 238 AFIPL-AFQ-P--DNNRLNRLLAKGPTGLDDLKTLAVSRLY 274 (351)
T ss_pred EEEee-ccc-C--CCCcccCCCCCCCCHHHHHHHHHHHHHh
Confidence 444 333 3 34555443 446678889888887433
|
Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein. |
| >PRK05926 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=246.75 Aligned_cols=240 Identities=15% Similarity=0.172 Sum_probs=191.7
Q ss_pred ccHHHHHHHHh---ccChhhhhhhcCCCCcccccCCCCCCccEEEEee-----eCCccCCCCcCCCCCCCCC-CC--CCC
Q 017200 90 DKYVQIKKKLR---ELKLHTVCEEAKCPNLGECWSGGETGTATATIMI-----LGDTCTRGCRFCNVKTSRA-PP--PPD 158 (375)
Q Consensus 90 ~~~~~~~~~l~---~~~L~tvceeA~cpn~~ec~~~~~~~~~tatfm~-----i~d~C~~~C~FC~v~~~r~-~~--~ld 158 (375)
-..++...+|. ..+|..+++.|+..+... +| . .++|.. .+|.|..+|.||++....+ +. .++
T Consensus 28 ls~eeal~Ll~~~~~~~l~~L~~~A~~iR~~~-~G-~-----~V~~~~~~nin~Tn~C~~dC~FCaf~~~~~~~~~~~ls 100 (370)
T PRK05926 28 LSEEDALQLLLLTDAEDQRALWSFADLIRANR-VG-D-----TVYYSSTLYLYPTNFCQFNCTFCSFYAKPGDPKGWFYT 100 (370)
T ss_pred CCHHHHHHHHhCCCchHHHHHHHHHHHHHHHh-cC-C-----eEEEEEeeeeecCCCCCCCCCccccccCCCCcccccCC
Confidence 34677777773 357889999998877653 34 3 566642 4999999999999876432 22 389
Q ss_pred cchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCC---C------CCChHHHHHHH
Q 017200 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPD---F------RGNNGCVREVA 229 (375)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd---~------~g~~e~l~~L~ 229 (375)
+||+++.|+++ ..|+++++|+||.+++++ .++|.++++.|++.+|++.+++++|. + ....|.++.|+
T Consensus 101 ~eeI~~~a~~a-~~G~~ei~iv~G~~p~~~---~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~~~~~e~l~~Lk 176 (370)
T PRK05926 101 PDQLVQSIKEN-PSPITETHIVAGCFPSCN---LAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDNLPVKEVLQTLK 176 (370)
T ss_pred HHHHHHHHHHH-hcCCCEEEEEeCcCCCCC---HHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcCCCHHHHHHHHH
Confidence 99999999998 699999999999887754 78999999999999999999988763 1 11478899999
Q ss_pred HcCccccccc-ccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEE
Q 017200 230 KSGLNVFAHN-IETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVM 307 (375)
Q Consensus 230 ~aGldv~~hn-lEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v 307 (375)
++|+|.|+|+ +|+. ++++++++|.+.++++|+++++.||+ .|+.++++||+|+|||+||+++++..||+++++.+
T Consensus 177 eAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~---~Gi~~~sgmi~G~gEt~edrv~~l~~Lr~Lq~~t~ 253 (370)
T PRK05926 177 IAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHS---LGIPSNATMLCYHRETPEDIVTHMSKLRALQDKTS 253 (370)
T ss_pred HcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHH---cCCcccCceEEeCCCCHHHHHHHHHHHHhcCCccC
Confidence 9999999997 9975 58888899778899999999999999 68999999999999999999999999999999987
Q ss_pred eeecCC----CCCCCCCCccc----cCCHHHHHHHHHHHHHhhhhh
Q 017200 308 TFGQYM----RPSKRHMPVSE----YITPEAFERYRALGMEMGFRY 345 (375)
Q Consensus 308 ~i~qYl----~P~~~~~~v~~----~v~pe~~~~l~~~a~~~gf~~ 345 (375)
+|..|+ +|. ++++.. .......+.|+.+|.++=|+-
T Consensus 254 gf~~fIp~~f~~~--~t~l~~~~~~~~~~~~~~~lr~~AvaRl~l~ 297 (370)
T PRK05926 254 GFKNFILLKFASE--NNALGKRLRKMGSRHSIPPASIIAVARLFLD 297 (370)
T ss_pred CeeeeEecccCCC--CCcccccccccCCCChHHHHHHHHHHHHhcC
Confidence 777664 352 333321 112334577898988876654
|
|
| >PRK08445 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-28 Score=242.34 Aligned_cols=237 Identities=14% Similarity=0.211 Sum_probs=189.9
Q ss_pred HHHHHHHHhccChhhhhhhcCCCCcccccCCCCCCccEEEEee-----eCCccCCCCcCCCCCCCC-CCC--CCCcchHH
Q 017200 92 YVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMI-----LGDTCTRGCRFCNVKTSR-APP--PPDPDEPT 163 (375)
Q Consensus 92 ~~~~~~~l~~~~L~tvceeA~cpn~~ec~~~~~~~~~tatfm~-----i~d~C~~~C~FC~v~~~r-~~~--~ld~eEi~ 163 (375)
.++...+|...+|..+++.|+-.+.. .+|+. ..+|++ .+++|..+|.||+++... .+. .++++||+
T Consensus 6 ~~e~l~Ll~~~~l~~L~~~A~~vr~~-~~g~~-----v~~~~~~~~in~Tn~C~~~C~FCa~~~~~~~~~~y~l~~eeI~ 79 (348)
T PRK08445 6 KEEALDLIKNAPLKELGEMALERKQE-LHPEK-----ITTFIVDRNINYTNICWVDCKFCAFYRHLKEDDAYILSFEEID 79 (348)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHH-HcCCc-----EEEEecccccccccccccCCccCCCccCCCCCCCeeCCHHHHH
Confidence 56777788888899999999876664 23443 566554 599999999999998742 222 37999999
Q ss_pred HHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCC---CC----C--ChHHHHHHHHcCcc
Q 017200 164 NVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPD---FR----G--NNGCVREVAKSGLN 234 (375)
Q Consensus 164 ~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd---~~----g--~~e~l~~L~~aGld 234 (375)
+.++++.+.|.++|+++|++.++++ .+++.++++.|++.+|++.+.++++. +. + .+|.++.|+++|++
T Consensus 80 ~~~~~a~~~g~~~i~~~gg~~~~~~---~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAGl~ 156 (348)
T PRK08445 80 KKIEELLAIGGTQILFQGGVHPKLK---IEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERLQAKGLS 156 (348)
T ss_pred HHHHHHHHcCCCEEEEecCCCCCCC---HHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHcCCC
Confidence 9999999999999999998887765 78999999999999999999876652 11 1 37999999999999
Q ss_pred cccc-cccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeec-
Q 017200 235 VFAH-NIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ- 311 (375)
Q Consensus 235 v~~h-nlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~q- 311 (375)
.|+| ++|+. +++++.+++.+.+.++|+++++.||+ .|+.++++||+|+|||.+|+++++..|++++++..+|..
T Consensus 157 ~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~---~Gi~~~sg~i~G~~Et~edr~~~l~~lreLq~~~~g~~~f 233 (348)
T PRK08445 157 SIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHL---IGMKSTATMMFGTVENDEEIIEHWERIRDLQDETGGFRAF 233 (348)
T ss_pred CCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHH---cCCeeeeEEEecCCCCHHHHHHHHHHHHHHHHHhCCeeEE
Confidence 9997 59975 59999998789999999999999999 689999999999999999999999999999987533322
Q ss_pred ---CCCCCCCCCCcccc----CCHHHHHHHHHHHHHhh
Q 017200 312 ---YMRPSKRHMPVSEY----ITPEAFERYRALGMEMG 342 (375)
Q Consensus 312 ---Yl~P~~~~~~v~~~----v~pe~~~~l~~~a~~~g 342 (375)
.++| .++|+... ..+...+.|+.+|..+=
T Consensus 234 i~~~~~p--~~tpl~~~~~~~~~~~~~e~Lr~iAv~Rl 269 (348)
T PRK08445 234 ILWSFQP--DNTPLKEEIPEIKKQSSNRYLRLLAVSRL 269 (348)
T ss_pred eccccCC--CCCcccccCCCCCCCCHHHHHHHHHHHHH
Confidence 2355 34454321 12344677888887743
|
|
| >PRK08508 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=231.47 Aligned_cols=204 Identities=18% Similarity=0.251 Sum_probs=166.1
Q ss_pred EEEEeee-CCccCCCCcCCCCCCC-CC-C--CC-CCcchHHHHHHHHHhcCCcEEEEE-eeeCCCCCcccHHHHHHHHHH
Q 017200 129 TATIMIL-GDTCTRGCRFCNVKTS-RA-P--PP-PDPDEPTNVAEAIASWGLDYVVIT-SVDRDDLADQGSGHFAQTVRK 201 (375)
Q Consensus 129 tatfm~i-~d~C~~~C~FC~v~~~-r~-~--~~-ld~eEi~~~a~al~~~G~~eIvLT-sgdr~dl~d~G~~~~~~lir~ 201 (375)
..+++.+ +.+|+.+|.||+++.. .. . .. +++||+++.|+.+.+.|+++++++ +|...+ +...+++.++++.
T Consensus 6 ~~~i~~~~s~gC~~~C~FCa~~~~~~~~~~~y~~~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~--~~~~e~~~ei~~~ 83 (279)
T PRK08508 6 LCAISNISSGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKANGALGFCLVTSGRGLD--DKKLEYVAEAAKA 83 (279)
T ss_pred EEEEeccccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEeccCCCC--cccHHHHHHHHHH
Confidence 3444433 7899999999999863 22 1 13 699999999999999999999885 665322 2347899999999
Q ss_pred HHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE
Q 017200 202 LKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI 281 (375)
Q Consensus 202 Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~i 281 (375)
||+..|++.+.++.+.. +.|.++.|+++|+|.++||+||.+++|+.++ ..++|++++++++.|++ .|+.+++++
T Consensus 84 ik~~~p~l~i~~s~G~~--~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~-~~~~~~~~l~~i~~a~~---~Gi~v~sg~ 157 (279)
T PRK08508 84 VKKEVPGLHLIACNGTA--SVEQLKELKKAGIFSYNHNLETSKEFFPKIC-TTHTWEERFQTCENAKE---AGLGLCSGG 157 (279)
T ss_pred HHhhCCCcEEEecCCCC--CHHHHHHHHHcCCCEEcccccchHHHhcCCC-CCCCHHHHHHHHHHHHH---cCCeeccee
Confidence 99988888887766555 7999999999999999999999999999999 58999999999999999 589999999
Q ss_pred EEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhh
Q 017200 282 MLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGF 343 (375)
Q Consensus 282 mvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf 343 (375)
|+|+|||+||+++++.+|++++++.|++ +|+.| .+++|+... .....+.++.+|..+=+
T Consensus 158 I~GlGEt~ed~~~~l~~lr~L~~~svpl-~~~~p-~~~t~~~~~-~~~~~~~lr~iAv~Rl~ 216 (279)
T PRK08508 158 IFGLGESWEDRISFLKSLASLSPHSTPI-NFFIP-NPALPLKAP-TLSADEALEIVRLAKEA 216 (279)
T ss_pred EEecCCCHHHHHHHHHHHHcCCCCEEee-CCcCC-CCCCCCCCC-CCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 67777 345665421 23345667666665433
|
|
| >PRK15108 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=235.55 Aligned_cols=234 Identities=15% Similarity=0.255 Sum_probs=179.1
Q ss_pred HHHHHHHHhccChhhhhhhcCCCCcccccCCCCCCccEEEEeee-CCccCCCCcCCCCCCCC-C--C-CC-CCcchHHHH
Q 017200 92 YVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMIL-GDTCTRGCRFCNVKTSR-A--P-PP-PDPDEPTNV 165 (375)
Q Consensus 92 ~~~~~~~l~~~~L~tvceeA~cpn~~ec~~~~~~~~~tatfm~i-~d~C~~~C~FC~v~~~r-~--~-~~-ld~eEi~~~ 165 (375)
.++...++. .+|..++..|+-.+.. .|+++ .....+++.+ +|+|+.+|.||+++... . + .. +++||+++.
T Consensus 9 ~~e~~~l~~-~~l~~l~~~A~~ir~~-~fg~~--~v~l~~i~~~~Tn~C~~~C~yC~~~~~~~~~~~~~~~ls~eEI~~~ 84 (345)
T PRK15108 9 LSQVTELFE-KPLLELLFEAQQVHRQ-HFDPR--QVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLES 84 (345)
T ss_pred HHHHHHHHc-ccHHHHHHHHHHHHHH-hcCCC--EEEEEEeEEEECCCcCCCCcCCCCcccCCCCCCcccCCCHHHHHHH
Confidence 566677764 4888888888766554 34432 1122344444 99999999999998532 1 1 22 899999999
Q ss_pred HHHHHhcCCcEEEEEeee-CCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccchH
Q 017200 166 AEAIASWGLDYVVITSVD-RDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE 244 (375)
Q Consensus 166 a~al~~~G~~eIvLTsgd-r~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~ 244 (375)
|+.+.+.|+++++++++. .+ ++...+++.++++.||+. .+.+.+..+.. +.+.++.|+++|+|.|+|++||.+
T Consensus 85 a~~~~~~G~~~i~i~~~g~~p--~~~~~e~i~~~i~~ik~~--~i~v~~s~G~l--s~e~l~~LkeAGld~~n~~leT~p 158 (345)
T PRK15108 85 ARKAKAAGSTRFCMGAAWKNP--HERDMPYLEQMVQGVKAM--GLETCMTLGTL--SESQAQRLANAGLDYYNHNLDTSP 158 (345)
T ss_pred HHHHHHcCCCEEEEEecCCCC--CcchHHHHHHHHHHHHhC--CCEEEEeCCcC--CHHHHHHHHHcCCCEEeeccccCh
Confidence 999999999999996553 33 222378999999999864 35554444444 699999999999999999999988
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHc--CCcEEeeecCCCCCCCCCCc
Q 017200 245 ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAA--GVDVMTFGQYMRPSKRHMPV 322 (375)
Q Consensus 245 rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrel--gvd~v~i~qYl~P~~~~~~v 322 (375)
+.|++++ .+++|++|+++++.+++ .|+.+++++|+|+|||++|+++++..|+++ +++.|++ +++.|. +++|+
T Consensus 159 ~~f~~I~-~~~~~~~rl~~i~~a~~---~G~~v~sg~i~GlgEt~ed~v~~~~~l~~l~~~~~~ip~-~~~~P~-~gTpl 232 (345)
T PRK15108 159 EFYGNII-TTRTYQERLDTLEKVRD---AGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPI-NMLVKV-KGTPL 232 (345)
T ss_pred HhcCCCC-CCCCHHHHHHHHHHHHH---cCCceeeEEEEeCCCCHHHHHHHHHHHHhccCCCCEEEe-CCccCC-CCCCC
Confidence 9999999 58899999999999999 689999999999999999999999999999 5689999 566663 46666
Q ss_pred cccCCHHHHHHHHHHHHHh
Q 017200 323 SEYITPEAFERYRALGMEM 341 (375)
Q Consensus 323 ~~~v~pe~~~~l~~~a~~~ 341 (375)
.........+.|+.+|..+
T Consensus 233 ~~~~~~~~~e~lr~iAi~R 251 (345)
T PRK15108 233 ADNDDVDAFDFIRTIAVAR 251 (345)
T ss_pred CCCCCCCHHHHHHHHHHHH
Confidence 5432223456666666553
|
|
| >COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=232.46 Aligned_cols=212 Identities=17% Similarity=0.304 Sum_probs=173.7
Q ss_pred EEEEeeeCCc-cCCCCcCCCCCCC-CCCC----CCCcchHHHHHHHHHhcC-CcEEEEEeeeCCCCCcccHHHHHHHHHH
Q 017200 129 TATIMILGDT-CTRGCRFCNVKTS-RAPP----PPDPDEPTNVAEAIASWG-LDYVVITSVDRDDLADQGSGHFAQTVRK 201 (375)
Q Consensus 129 tatfm~i~d~-C~~~C~FC~v~~~-r~~~----~ld~eEi~~~a~al~~~G-~~eIvLTsgdr~dl~d~G~~~~~~lir~ 201 (375)
..++|.+.++ |+.+|.||+++.. +.+. .+++|||++.|+++++.| .+++.++||.. ...+ ..++.++++.
T Consensus 50 l~~ii~iktg~c~edC~yC~qS~~~~~~~~~~~l~~~eeIle~Ak~ak~~Ga~r~c~~aagr~-~~~~--~~~i~~~v~~ 126 (335)
T COG0502 50 LSTLISIKTGCCPEDCAYCSQSARYKTGVKARKLMEVEEILEAAKKAKAAGATRFCMGAAGRG-PGRD--MEEVVEAIKA 126 (335)
T ss_pred EEEEEEeecCCCCCCCCCccccccCcCCCchhhcCCHHHHHHHHHHHHHcCCceEEEEEeccC-CCcc--HHHHHHHHHH
Confidence 4455555444 5999999999973 2221 279999999999999999 57777777754 2123 7889999999
Q ss_pred HHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE
Q 017200 202 LKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI 281 (375)
Q Consensus 202 Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~i 281 (375)
||+... +.+.+..+.. +.|+++.|+++|+|.|+||+||++++|+.|+ .+++|++++++++.+++ .|+.+++|+
T Consensus 127 Vk~~~~-le~c~slG~l--~~eq~~~L~~aGvd~ynhNLeTs~~~y~~I~-tt~t~edR~~tl~~vk~---~Gi~vcsGg 199 (335)
T COG0502 127 VKEELG-LEVCASLGML--TEEQAEKLADAGVDRYNHNLETSPEFYENII-TTRTYEDRLNTLENVRE---AGIEVCSGG 199 (335)
T ss_pred HHHhcC-cHHhhccCCC--CHHHHHHHHHcChhheecccccCHHHHcccC-CCCCHHHHHHHHHHHHH---cCCccccce
Confidence 997664 7777777766 8999999999999999999999999999999 59999999999999999 689999999
Q ss_pred EEecCCCHHHHHHHHHHHHHcC-CcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccchhhhhh
Q 017200 282 MLGCGETPDQVVSTMEKVRAAG-VDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSS 355 (375)
Q Consensus 282 mvGlGET~ee~~etl~~Lrelg-vd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrss 355 (375)
|||+|||.+|+++++..|++++ +|.||| +++.| .+++|+.+.-..+-++.++.+|.. +..+.--++|.|
T Consensus 200 I~GlGEs~eDri~~l~~L~~l~~pdsVPI-n~l~P-~~GTPle~~~~~~~~e~lk~IA~~---Ri~~P~~~Ir~s 269 (335)
T COG0502 200 IVGLGETVEDRAELLLELANLPTPDSVPI-NFLNP-IPGTPLENAKPLDPFEFLKTIAVA---RIIMPKSMIRLS 269 (335)
T ss_pred EecCCCCHHHHHHHHHHHHhCCCCCeeee-eeecC-CCCCccccCCCCCHHHHHHHHHHH---HHHCCcceeEcc
Confidence 9999999999999999999999 999999 67778 458888865445568888888765 444444455544
|
|
| >PLN02389 biotin synthase | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-27 Score=234.89 Aligned_cols=237 Identities=14% Similarity=0.240 Sum_probs=182.6
Q ss_pred cHHHHHHHHhccChhhhhhhcCCCCcccccCCCCCCccEEEEeee-CCccCCCCcCCCCCCCC--C-C-C-CCCcchHHH
Q 017200 91 KYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMIL-GDTCTRGCRFCNVKTSR--A-P-P-PPDPDEPTN 164 (375)
Q Consensus 91 ~~~~~~~~l~~~~L~tvceeA~cpn~~ec~~~~~~~~~tatfm~i-~d~C~~~C~FC~v~~~r--~-~-~-~ld~eEi~~ 164 (375)
.++++..++.. +|..++..|.-.+...+ ++. .-...+++.+ +++|+.+|.||+++... + + . .+++||+++
T Consensus 48 t~~e~l~L~~~-~l~~l~~~A~~vr~~~~-~~~--~v~~~~i~n~~T~~C~~~C~fCaqs~~~~~~~~~~~~Ls~EeIl~ 123 (379)
T PLN02389 48 TRDEIKEVYDS-PLLDLLFHGAQVHRHAH-DPR--EVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKAQKLMSKDDVLE 123 (379)
T ss_pred CHHHHHHHHcC-cHHHHHHHHHHHHHHhc-CCC--EEEEEEEEEeccCCcCcCCCCCCCcccCCCCCcccccCCHHHHHH
Confidence 47788888754 88888888887776544 332 1122333434 89999999999998632 1 1 1 389999999
Q ss_pred HHHHHHhcCCcEEEEEeeeCCCC-CcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccch
Q 017200 165 VAEAIASWGLDYVVITSVDRDDL-ADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV 243 (375)
Q Consensus 165 ~a~al~~~G~~eIvLTsgdr~dl-~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv 243 (375)
.|+.+.+.|+++++|++..+... ++..++++.++++.||+. .+.|.+..+.. +.|.++.|+++|+|.|+|++||+
T Consensus 124 ~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~--~l~i~~s~G~l--~~E~l~~LkeAGld~~~~~LeTs 199 (379)
T PLN02389 124 AAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGM--GMEVCCTLGML--EKEQAAQLKEAGLTAYNHNLDTS 199 (379)
T ss_pred HHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcC--CcEEEECCCCC--CHHHHHHHHHcCCCEEEeeecCC
Confidence 99999999999999874432211 112378899999999864 35565555444 78999999999999999999998
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHc--CCcEEeeecCCCCCCCCCC
Q 017200 244 EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAA--GVDVMTFGQYMRPSKRHMP 321 (375)
Q Consensus 244 ~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrel--gvd~v~i~qYl~P~~~~~~ 321 (375)
+++|++++ .+++|++|+++++.|++ .|+.+++++|+|+|||++|+++++..|+++ +++.|++ +++.|. +++|
T Consensus 200 ~~~y~~i~-~~~s~e~rl~ti~~a~~---~Gi~v~sg~IiGlgEt~edrv~~l~~Lr~L~~~~~~v~l-~~l~P~-~GTp 273 (379)
T PLN02389 200 REYYPNVI-TTRSYDDRLETLEAVRE---AGISVCSGGIIGLGEAEEDRVGLLHTLATLPEHPESVPI-NALVAV-KGTP 273 (379)
T ss_pred hHHhCCcC-CCCCHHHHHHHHHHHHH---cCCeEeEEEEECCCCCHHHHHHHHHHHHhcccCCcEEec-ccceec-CCCc
Confidence 89999999 47899999999999999 589999999999999999999999999999 5789999 566673 4677
Q ss_pred ccccCCHHHHHHHHHHHHHh
Q 017200 322 VSEYITPEAFERYRALGMEM 341 (375)
Q Consensus 322 v~~~v~pe~~~~l~~~a~~~ 341 (375)
+.....+...+.++.+|..+
T Consensus 274 L~~~~~~s~~e~lr~iAi~R 293 (379)
T PLN02389 274 LEDQKPVEIWEMVRMIATAR 293 (379)
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 66543445566677666653
|
|
| >PRK09234 fbiC FO synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=8e-27 Score=253.74 Aligned_cols=240 Identities=17% Similarity=0.234 Sum_probs=193.4
Q ss_pred ccHHHHHHHHh--ccChhhhhhhcCCCCcccccCCCCCCccEEEEee-----eCCccCCCCcCCCCCCCCC-C--CCCCc
Q 017200 90 DKYVQIKKKLR--ELKLHTVCEEAKCPNLGECWSGGETGTATATIMI-----LGDTCTRGCRFCNVKTSRA-P--PPPDP 159 (375)
Q Consensus 90 ~~~~~~~~~l~--~~~L~tvceeA~cpn~~ec~~~~~~~~~tatfm~-----i~d~C~~~C~FC~v~~~r~-~--~~ld~ 159 (375)
-..++...++. +.+|..+|+.|+-.+... +| . +++|++ ++|.|..+|+||+|+...+ . ..+++
T Consensus 487 ls~~eal~Ll~~~~~~l~~L~~~Ad~iR~~~-~G-~-----~Vt~vvn~~In~TN~C~~~C~FCafs~~~~~~~~y~Ls~ 559 (843)
T PRK09234 487 LTDDEALALFTADGPALEAVCRLADDLRRDV-VG-D-----DVTYVVNRNINFTNICYTGCRFCAFAQRKTDADAYTLSL 559 (843)
T ss_pred CCHHHHHHHHcCCchhHHHHHHHHHHHHHHh-cC-C-----eEEEEEeeceecCCCCCCCCcccccccCCCCCCcccCCH
Confidence 45777888885 457999999998777653 34 3 677743 4899999999999997532 2 24899
Q ss_pred chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCC-C--------CCChHHHHHHHH
Q 017200 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPD-F--------RGNNGCVREVAK 230 (375)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd-~--------~g~~e~l~~L~~ 230 (375)
|||++.|+++.+.|+++|+|+||.+++++ .++|.++++.||+.+|++.|++++|. . ....|.++.|++
T Consensus 560 eeI~~~a~ea~~~G~tev~i~gG~~p~~~---~~~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~Gl~~~e~l~~Lke 636 (843)
T PRK09234 560 DEVADRAWEAWVAGATEVCMQGGIHPELP---GTGYADLVRAVKARVPSMHVHAFSPMEIVNGAARLGLSIREWLTALRE 636 (843)
T ss_pred HHHHHHHHHHHHCCCCEEEEecCCCCCcC---HHHHHHHHHHHHHhCCCeeEEecChHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999999999999887765 68999999999999999999998871 1 125899999999
Q ss_pred cCccccccc-ccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCc---
Q 017200 231 SGLNVFAHN-IETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVD--- 305 (375)
Q Consensus 231 aGldv~~hn-lEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd--- 305 (375)
+|+|.|++. .|.. +++++.++|.+.+.++|+++++.||+ .|+.++++||+|+|||.+|++++|..||+++++
T Consensus 637 AGLds~pgt~aeil~d~vr~~i~p~k~~~~~wle~i~~Ah~---lGi~~~stmm~G~~Et~edrv~hl~~LreLq~~tgG 713 (843)
T PRK09234 637 AGLDTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHE---VGLRSSSTMMYGHVDTPRHWVAHLRVLRDIQDRTGG 713 (843)
T ss_pred hCcCccCCCchhhCCHHHHhhcCCCCCCHHHHHHHHHHHHH---cCCCcccceEEcCCCCHHHHHHHHHHHHhcCcccCC
Confidence 999999985 4543 58988999778899999999999999 589999999999999999999999999999984
Q ss_pred ---EEeeecCCCCCCCCCCccc--cCCHHHHHHHHHHHHHhhhh
Q 017200 306 ---VMTFGQYMRPSKRHMPVSE--YITPEAFERYRALGMEMGFR 344 (375)
Q Consensus 306 ---~v~i~qYl~P~~~~~~v~~--~v~pe~~~~l~~~a~~~gf~ 344 (375)
+|++ +|+.|. ..++... ...+...+.|+.+|..+=++
T Consensus 714 f~~fIPl-~F~~~~-tpl~l~~~~~~~~t~~e~Lr~iAvaRl~L 755 (843)
T PRK09234 714 FTEFVPL-PFVHQN-APLYLAGAARPGPTHRENRAVHALARIML 755 (843)
T ss_pred eeeeeec-cccCCC-CCcccccCCCCCCCHHHHHHHHHHHHHhC
Confidence 7777 676553 2332221 12245578888888875554
|
|
| >PRK07360 FO synthase subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.9e-27 Score=233.50 Aligned_cols=235 Identities=15% Similarity=0.224 Sum_probs=180.0
Q ss_pred cHHHHHHHHhccC---hhhhhhhcCCCCcccccCCCCCCccEEEEe-----eeCCccCCCCcCCCCCCCCCCC---CCCc
Q 017200 91 KYVQIKKKLRELK---LHTVCEEAKCPNLGECWSGGETGTATATIM-----ILGDTCTRGCRFCNVKTSRAPP---PPDP 159 (375)
Q Consensus 91 ~~~~~~~~l~~~~---L~tvceeA~cpn~~ec~~~~~~~~~tatfm-----~i~d~C~~~C~FC~v~~~r~~~---~ld~ 159 (375)
+.+++..+|...+ |..+++.|+-.+.. .+| . .++|. .++|.|+.+|.||+++...+.. .+++
T Consensus 21 s~~e~~~Ll~~~~~~~l~~L~~~A~~ir~~-~~G-~-----~v~~~~~~~i~~Tn~C~~~C~fC~~~~~~~~~~~y~ls~ 93 (371)
T PRK07360 21 SKEDALELLETTEPRRIFEILELADRLRKE-QVG-D-----TVTYVVNRNINFTNICEGHCGFCAFRRDEGDHGAFWLTI 93 (371)
T ss_pred CHHHHHHHhcCCChHHHHHHHHHHHHHHHH-hcC-C-----eEEEEeccCcccchhhhcCCccCCcccCCCCCCCeeCCH
Confidence 4667777776544 77777777655554 233 3 56663 3499999999999998753222 3899
Q ss_pred chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecC----------CCCCChHHHHHHH
Q 017200 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVP----------DFRGNNGCVREVA 229 (375)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~p----------d~~g~~e~l~~L~ 229 (375)
||+++.|+++.+.|+++++||||.+++..+ .++++++++.||+.+|++.+.+++| .. ...+.++.|+
T Consensus 94 eeI~~~a~~a~~~G~~~i~l~~G~~p~~~~--~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~-~~~e~l~~Lk 170 (371)
T PRK07360 94 AEILEKAAEAVKRGATEVCIQGGLHPAADS--LEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGL-SYEEVLKALK 170 (371)
T ss_pred HHHHHHHHHHHhCCCCEEEEccCCCCCCCc--HHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCC-CHHHHHHHHH
Confidence 999999999999999999999998777653 6889999999999889999998754 22 1578899999
Q ss_pred HcCccccccc-ccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEE
Q 017200 230 KSGLNVFAHN-IET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVM 307 (375)
Q Consensus 230 ~aGldv~~hn-lEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v 307 (375)
++|+|.|+.. .|. .+++++.+++.+.++++|+++++.|++ .|+.++|++|+|+|||++|+++++..|++++++..
T Consensus 171 eAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~---~Gl~~~sg~i~G~gEt~edrv~~l~~lr~l~~~~~ 247 (371)
T PRK07360 171 DAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHK---LGLPTTSTMMYGHVETPEHRIDHLLILREIQQETG 247 (371)
T ss_pred HcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHH---cCCCceeeEEeeCCCCHHHHHHHHHHHHHhchhhC
Confidence 9999999532 343 247777888667899999999999999 68999999999999999999999999999999763
Q ss_pred eee-----cCCCCCCCCCCccccC----CHHHHHHHHHHHHHh
Q 017200 308 TFG-----QYMRPSKRHMPVSEYI----TPEAFERYRALGMEM 341 (375)
Q Consensus 308 ~i~-----qYl~P~~~~~~v~~~v----~pe~~~~l~~~a~~~ 341 (375)
+|. +|+.| ++|+.... .+...+.++.+|..+
T Consensus 248 g~~~fIp~~f~~~---~Tpl~~~~~~~~~~~~~~~lr~iAi~R 287 (371)
T PRK07360 248 GITEFVPLPFVHE---NAPLYERGRVKGGAPGLEDLLLYAVSR 287 (371)
T ss_pred CeeEEEeccccCC---CCccccccccCCCCCHHHHHHHHHHHH
Confidence 333 44433 44543321 123455588888763
|
|
| >COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=231.22 Aligned_cols=251 Identities=18% Similarity=0.263 Sum_probs=195.7
Q ss_pred cHHHHHHHHhccChhhhhhhcCCCCcccccCCCCCCccEEEEe-----eeCCccCCCCcCCCCCCCCC-CC--CCCcchH
Q 017200 91 KYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIM-----ILGDTCTRGCRFCNVKTSRA-PP--PPDPDEP 162 (375)
Q Consensus 91 ~~~~~~~~l~~~~L~tvceeA~cpn~~ec~~~~~~~~~tatfm-----~i~d~C~~~C~FC~v~~~r~-~~--~ld~eEi 162 (375)
...+...+|...++.++.+.|.-.+...-- +. ++||+ .+||.|.++|.||+|....+ +. -|++|||
T Consensus 22 ~~~d~~~Ll~~~~~~~l~~~A~~~r~~~~~-~~-----~vtyv~n~~in~TN~C~~~C~fCaF~~~~~~~~~y~Ls~eeI 95 (370)
T COG1060 22 TREDALALLSPADLEELEELADKARRRKRV-GD-----GVTYVVNRNINYTNICVNDCTFCAFYRKPGDPKAYTLSPEEI 95 (370)
T ss_pred CHHHHHHHhccCcHHHHHHHHHHHHHhhcc-CC-----cEEEEEeecCCcchhhcCCCCccccccCCCCccccccCHHHH
Confidence 467778888877888888877766633222 22 56665 36999999999999998642 22 3999999
Q ss_pred HHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCC-C--------CCChHHHHHHHHcCc
Q 017200 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPD-F--------RGNNGCVREVAKSGL 233 (375)
Q Consensus 163 ~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd-~--------~g~~e~l~~L~~aGl 233 (375)
.++++++.+.|+++|+|+||.++++. .++|.++++.||+.+|++.|.++++. + ....|.+++|+++|+
T Consensus 96 ~~~~~~~~~~G~~Evli~gG~~p~~~---~~y~~~~~~~ik~~~p~~~i~a~s~~ei~~~~~~~~~s~~E~l~~Lk~aGl 172 (370)
T COG1060 96 LEEVREAVKRGITEVLIVGGEHPELS---LEYYEELFRTIKEEFPDLHIHALSAGEILFLAREGGLSYEEVLKRLKEAGL 172 (370)
T ss_pred HHHHHHHHHcCCeEEEEecCcCCCcc---hHHHHHHHHHHHHhCcchhhcccCHHHhHHHHhccCCCHHHHHHHHHHcCC
Confidence 99999999999999999999998875 56999999999999999999999873 2 113777999999999
Q ss_pred ccccccccc--hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCc------
Q 017200 234 NVFAHNIET--VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVD------ 305 (375)
Q Consensus 234 dv~~hnlEt--v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd------ 305 (375)
|.++.+.++ ++++.+.+++++.++++||++++.|++ .||+++++||+|++||.+|+++||..+|++|-.
T Consensus 173 dsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~---lGI~~tatml~Gh~E~~ed~~~hl~~ir~lQ~~~gg~~~ 249 (370)
T COG1060 173 DSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHR---LGIPTTATMLLGHVETREDRIDHLEHIRDLQDETGGFQE 249 (370)
T ss_pred CcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHH---cCCCccceeEEEecCCHHHHHHHHHHHHHHHHHhCCcEE
Confidence 999998764 458888888899999999999999999 689999999999999999999999999999742
Q ss_pred EEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhh----ccchhhhhh
Q 017200 306 VMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV----ASGPMVRSS 355 (375)
Q Consensus 306 ~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~----~sgp~vrss 355 (375)
++++ -++|.+...+....-.+.-.+.++.+|.++=|+-. -..|+++.-
T Consensus 250 fI~~--~f~p~~~~~~~~~~~~~~~~~~l~~iAiaRi~l~~~i~~~~a~w~~~g 301 (370)
T COG1060 250 FIPL--RFRPENGPLPAEVVPEASLEQDLKAIALARIFLDNNISNIQASWLRDG 301 (370)
T ss_pred EEcc--cccCCCCCccccCCCCCCHHHHHHHHHHHHHHccCccccccCcccccc
Confidence 3333 35673322122221234568888989888766552 334555543
|
|
| >TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=230.12 Aligned_cols=236 Identities=17% Similarity=0.310 Sum_probs=184.5
Q ss_pred HHHHHHHHhccChhhhhhhcCCCCcccccCCCCCCccEEEEee-----eCCccCCCCcCCCCCCCCC-C--CCCCcchHH
Q 017200 92 YVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMI-----LGDTCTRGCRFCNVKTSRA-P--PPPDPDEPT 163 (375)
Q Consensus 92 ~~~~~~~l~~~~L~tvceeA~cpn~~ec~~~~~~~~~tatfm~-----i~d~C~~~C~FC~v~~~r~-~--~~ld~eEi~ 163 (375)
.+++..+|...++..+++.|+-.+.. .|.|. .++|.. .+++|+.+|+||++....+ + ..++++|++
T Consensus 5 ~~~~~~ll~~~~~~~l~~~A~~vr~~-~~~g~-----~v~~~~~~~i~~s~~C~~~C~fC~~~~~~~~~~~~~ls~eei~ 78 (340)
T TIGR03699 5 REEALELYKEADLLALGALADEVRRR-RHPGN-----IVTFVVDRNINYTNICVVGCKFCAFYRAPGHPEGYVLSVEEIL 78 (340)
T ss_pred HHHHHHHccCCcHHHHHHHHHHHHHH-hcCCC-----eEEEEeecccccchhhccCCccCCcccCCCCccccCCCHHHHH
Confidence 56677778777888888888866664 34233 677643 5999999999999875432 2 238999999
Q ss_pred HHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCC---CC----C--ChHHHHHHHHcCcc
Q 017200 164 NVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPD---FR----G--NNGCVREVAKSGLN 234 (375)
Q Consensus 164 ~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd---~~----g--~~e~l~~L~~aGld 234 (375)
+.++.+++.|+++|+|+||..++++ .+++.++++.|++..|++.+.++++. +. | ..+.++.|+++|++
T Consensus 79 ~~~~~~~~~G~~~i~l~gG~~p~~~---~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g~~~~e~l~~Lk~aG~~ 155 (340)
T TIGR03699 79 QKIEELVAYGGTQILLQGGVNPDLG---LDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEGLSLREVLERLKEAGLD 155 (340)
T ss_pred HHHHHHHHcCCcEEEEecCCCCCCC---HHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCCCCHHHHHHHHHHcCCC
Confidence 9999999999999999999766554 68899999999998888877665542 10 1 37899999999999
Q ss_pred cccc-cccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcE------
Q 017200 235 VFAH-NIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDV------ 306 (375)
Q Consensus 235 v~~h-nlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~------ 306 (375)
.++| ++|+. +++++.+.+.+.++++|+++++.+++ .|+.+++++|+|+|||++|+++++..|++++++.
T Consensus 156 ~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~---~Gi~v~~~~iiGlgEt~ed~~~~l~~l~~l~~~~~~~~~f 232 (340)
T TIGR03699 156 SIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHK---LGLPTTATMMFGHVETLEDRIEHLERIRELQDKTGGFTAF 232 (340)
T ss_pred cCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHH---cCCCccceeEeeCCCCHHHHHHHHHHHHHhchhhCCeeEE
Confidence 9997 58976 69999998667899999999999999 5899999999999999999999999999999865
Q ss_pred EeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhh
Q 017200 307 MTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGF 343 (375)
Q Consensus 307 v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf 343 (375)
||+ +|+ | ..+|+.....+...+.++.+|..+-+
T Consensus 233 IP~-~f~-p--~~tpl~~~~~~~~~e~l~~iA~~Rl~ 265 (340)
T TIGR03699 233 IPW-TFQ-P--GNTELGKKRPATSTEYLKVLAISRIF 265 (340)
T ss_pred Eee-ccc-C--CCCcccCCCCCCHHHHHHHHHHHHHc
Confidence 443 333 5 34555442234446677777777543
|
members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine. |
| >TIGR00423 radical SAM domain protein, CofH subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-26 Score=225.03 Aligned_cols=202 Identities=16% Similarity=0.299 Sum_probs=163.4
Q ss_pred EEEeeeCCccCCCCcCCCCCCCCC-C--CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC
Q 017200 130 ATIMILGDTCTRGCRFCNVKTSRA-P--PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK 206 (375)
Q Consensus 130 atfm~i~d~C~~~C~FC~v~~~r~-~--~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~ 206 (375)
..++.++++|+++|.||+++...+ . ..+++|||++.++++.+.|+++|+|+||+.+++. .+++.++++.|++..
T Consensus 6 n~~i~~T~~C~~~C~FC~~~~~~~~~~~~~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~---~~~~~~i~~~Ik~~~ 82 (309)
T TIGR00423 6 NRNINFTNICVGKCKFCAFRAREKDKDAYVLSLEEILEKVKEAVAKGATEVCIQGGLNPQLD---IEYYEELFRAIKQEF 82 (309)
T ss_pred eeeecCccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCC---HHHHHHHHHHHHHHC
Confidence 345668999999999999986432 1 2489999999999999999999999998776543 688999999999999
Q ss_pred CCcEEEeecCC-------CCC--ChHHHHHHHHcCcccccc-cccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCc
Q 017200 207 PNMLIEALVPD-------FRG--NNGCVREVAKSGLNVFAH-NIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGT 275 (375)
Q Consensus 207 p~i~Ie~l~pd-------~~g--~~e~l~~L~~aGldv~~h-nlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl 275 (375)
|++.+.++++. -.| +.+.++.|+++|++.+++ ++|+. +++++.+++.+.++++|+++++.|++ .|+
T Consensus 83 ~~i~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~---~Gi 159 (309)
T TIGR00423 83 PDVHIHAFSPMEVYFLAKNEGLSIEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHR---LGI 159 (309)
T ss_pred CCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHH---cCC
Confidence 99998877651 111 478999999999999986 79976 69999998667899999999999999 589
Q ss_pred eEEEeEEEecCCCHHHHHHHHHHHHHcCCc------EEeeecCCCCCCCCCC-cccc--CCHHHHHHHHHHHHHh
Q 017200 276 LTKTSIMLGCGETPDQVVSTMEKVRAAGVD------VMTFGQYMRPSKRHMP-VSEY--ITPEAFERYRALGMEM 341 (375)
Q Consensus 276 ~tkt~imvGlGET~ee~~etl~~Lrelgvd------~v~i~qYl~P~~~~~~-v~~~--v~pe~~~~l~~~a~~~ 341 (375)
.+++++|+|+|||+||+++++..|++++.+ +||+ +|..+ ++| +... ..+...+.|+.+|..+
T Consensus 160 ~~~s~~iiG~~Et~ed~~~~l~~lr~l~~~~~~f~~fiP~-~f~~~---~t~~l~~~~~~~~~~~e~lr~iA~~R 230 (309)
T TIGR00423 160 PTTATMMFGHVENPEHRVEHLLRIRKIQEKTGGFTEFIPL-PFQPE---NNPYLEGEVRKGASGIDDLKVIAISR 230 (309)
T ss_pred CceeeEEecCCCCHHHHHHHHHHHHhhchhhCCeeeEEee-eecCC---CChhhccCCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999986 4554 44332 333 3322 2345677788877764
|
This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family. |
| >TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-26 Score=227.19 Aligned_cols=233 Identities=18% Similarity=0.266 Sum_probs=183.1
Q ss_pred HHHHHHHHhc-cChhhhhhhcCCCCcccccCCCCCCccEEEE-----eeeCCccCCCCcCCCCCCCCCC---CCCCcchH
Q 017200 92 YVQIKKKLRE-LKLHTVCEEAKCPNLGECWSGGETGTATATI-----MILGDTCTRGCRFCNVKTSRAP---PPPDPDEP 162 (375)
Q Consensus 92 ~~~~~~~l~~-~~L~tvceeA~cpn~~ec~~~~~~~~~tatf-----m~i~d~C~~~C~FC~v~~~r~~---~~ld~eEi 162 (375)
.+++..+|.. .++..+++.|+..+... + |. .++| +.++++|+.+|.||+++...+. ..+++||+
T Consensus 3 ~~e~~~ll~~~~~~~~L~~~A~~ir~~~-~-g~-----~v~~~~~~~i~~T~~C~~~C~FC~~~~~~~~~~~y~ls~eeI 75 (343)
T TIGR03551 3 KEEALELFEARGNLFELFRLADELRRDI-V-GD-----TVTYVVNRNINFTNVCYGGCGFCAFRKRKGDADAYLLSLEEI 75 (343)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHh-c-CC-----eEEEEeeeccccccccccCCccCCCccCCCCCCcccCCHHHH
Confidence 4667777765 67888999888776543 3 33 6776 3359999999999999864321 24899999
Q ss_pred HHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCC-------CC--CChHHHHHHHHcCc
Q 017200 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPD-------FR--GNNGCVREVAKSGL 233 (375)
Q Consensus 163 ~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd-------~~--g~~e~l~~L~~aGl 233 (375)
++.++.+.+.|+++|+|+||+.+++. .+++.++++.|++..|++.+.+++|. -. .+.|.++.|+++|+
T Consensus 76 ~e~~~~~~~~G~~~i~l~gG~~p~~~---~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl 152 (343)
T TIGR03551 76 AERAAEAWKAGATEVCIQGGIHPDLD---GDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGL 152 (343)
T ss_pred HHHHHHHHHCCCCEEEEEeCCCCCCC---HHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCc
Confidence 99999999999999999998766553 68899999999999899998886541 01 15899999999999
Q ss_pred ccccc-cccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCc------
Q 017200 234 NVFAH-NIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVD------ 305 (375)
Q Consensus 234 dv~~h-nlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd------ 305 (375)
+.+.. +.|+. ++++++|++.+.++++|+++++.+++ .|+.+++++|+|+|||.||+++++..|++++++
T Consensus 153 ~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~---~Gi~v~s~~i~G~~Et~ed~~~~l~~lr~l~~~~~~~~~ 229 (343)
T TIGR03551 153 DSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHK---LGIPTTATIMYGHVETPEHWVDHLLILREIQEETGGFTE 229 (343)
T ss_pred ccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHH---cCCcccceEEEecCCCHHHHHHHHHHHHHhhHHhCCeeE
Confidence 99973 46765 59999999545699999999999999 589999999999999999999999999999987
Q ss_pred EEeeecCCCCCCCCCCcccc----CCHHHHHHHHHHHHHh
Q 017200 306 VMTFGQYMRPSKRHMPVSEY----ITPEAFERYRALGMEM 341 (375)
Q Consensus 306 ~v~i~qYl~P~~~~~~v~~~----v~pe~~~~l~~~a~~~ 341 (375)
++|+ +|+.| ++|+... ......+.++.+|..+
T Consensus 230 ~iP~-~f~~~---gT~l~~~~~~~~~~~~~~~lr~iAv~R 265 (343)
T TIGR03551 230 FVPL-PFVHY---NAPLYLKGMARPGPTGREDLKVHAIAR 265 (343)
T ss_pred EEec-cccCC---CCccccccCCCCCCCHHHHHHHHHHHH
Confidence 4555 55544 3444321 1124577778777763
|
This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases. |
| >PRK06256 biotin synthase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=222.22 Aligned_cols=236 Identities=16% Similarity=0.218 Sum_probs=179.5
Q ss_pred ccHHHHHHHHh--ccChhhhhhhcCCCCcccccCCCCCCccEEEEee-eCCccCCCCcCCCCCCCCC-C----CCCCcch
Q 017200 90 DKYVQIKKKLR--ELKLHTVCEEAKCPNLGECWSGGETGTATATIMI-LGDTCTRGCRFCNVKTSRA-P----PPPDPDE 161 (375)
Q Consensus 90 ~~~~~~~~~l~--~~~L~tvceeA~cpn~~ec~~~~~~~~~tatfm~-i~d~C~~~C~FC~v~~~r~-~----~~ld~eE 161 (375)
-.++++..+|. +.+|..+++.|+-.+.. .+++. -...+++. .+++|+.+|.||+++...+ + ..++++|
T Consensus 20 ~~~~e~~~ll~~~~~~~~~L~~~A~~~r~~-~~g~~---v~~~~i~~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~s~ee 95 (336)
T PRK06256 20 LTKEEALALLEIPDDDLLELLAAAYEVRKH-FCGKK---VKLNTIINAKSGLCPEDCGYCSQSAGSSAPVYRYAWLDIEE 95 (336)
T ss_pred CCHHHHHHHHcCChHHHHHHHHHHHHHHHH-hCCCe---EEEEEeeeccCCCCCCCCccCCCcCCCCCCCceecCCCHHH
Confidence 34677777876 34688888888644432 22321 11123333 3999999999999986421 1 1379999
Q ss_pred HHHHHHHHHhcCCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccc
Q 017200 162 PTNVAEAIASWGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNI 240 (375)
Q Consensus 162 i~~~a~al~~~G~~eIvLTs-gdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnl 240 (375)
+++.++.+.+.|+++++|++ |..++..+ .+++.++++.|++. +++.+.+..+.. +.+.++.|+++|++.+.|++
T Consensus 96 I~~~~~~~~~~g~~~~~l~~~g~~p~~~~--~~~~~e~i~~i~~~-~~i~~~~~~g~l--~~e~l~~LkeaG~~~v~~~l 170 (336)
T PRK06256 96 LIEAAKEAIEEGAGTFCIVASGRGPSGKE--VDQVVEAVKAIKEE-TDLEICACLGLL--TEEQAERLKEAGVDRYNHNL 170 (336)
T ss_pred HHHHHHHHHHCCCCEEEEEecCCCCCchH--HHHHHHHHHHHHhc-CCCcEEecCCcC--CHHHHHHHHHhCCCEEecCC
Confidence 99999999999998887765 44343322 56899999999886 667776655544 78999999999999999999
Q ss_pred cchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCC
Q 017200 241 ETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHM 320 (375)
Q Consensus 241 Etv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~ 320 (375)
|+++++|+.|+ ++++|++++++++.+++ .|+.+++++|+|+|||++|+.+++..+++++++.+++ .++.|. +++
T Consensus 171 Ets~~~~~~i~-~~~t~~~~i~~i~~a~~---~Gi~v~~~~I~GlgEt~ed~~~~~~~l~~l~~~~v~i-~~l~P~-pGT 244 (336)
T PRK06256 171 ETSRSYFPNVV-TTHTYEDRIDTCEMVKA---AGIEPCSGGIIGMGESLEDRVEHAFFLKELDADSIPI-NFLNPI-PGT 244 (336)
T ss_pred ccCHHHHhhcC-CCCCHHHHHHHHHHHHH---cCCeeccCeEEeCCCCHHHHHHHHHHHHhCCCCEEee-cccccC-CCC
Confidence 99779999999 68899999999999999 5899999999999999999999999999999999998 455663 356
Q ss_pred CccccCCHHHHHHHHHHHHH
Q 017200 321 PVSEYITPEAFERYRALGME 340 (375)
Q Consensus 321 ~v~~~v~pe~~~~l~~~a~~ 340 (375)
|+.....+...+.++.+|..
T Consensus 245 ~l~~~~~~~~~e~l~~ia~~ 264 (336)
T PRK06256 245 PLENHPELTPLECLKTIAIF 264 (336)
T ss_pred CCCCCCCCCHHHHHHHHHHH
Confidence 65543333445555555543
|
|
| >PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-26 Score=227.37 Aligned_cols=210 Identities=16% Similarity=0.228 Sum_probs=174.3
Q ss_pred cHHHHHHHHhc---cChhhhhhhcCCCCcccccCCCCCCccEEE-E--eeeCCccCCCCcCCCCCCCCCC--CCCCcchH
Q 017200 91 KYVQIKKKLRE---LKLHTVCEEAKCPNLGECWSGGETGTATAT-I--MILGDTCTRGCRFCNVKTSRAP--PPPDPDEP 162 (375)
Q Consensus 91 ~~~~~~~~l~~---~~L~tvceeA~cpn~~ec~~~~~~~~~tat-f--m~i~d~C~~~C~FC~v~~~r~~--~~ld~eEi 162 (375)
+.+++..+|.. ..|..+++.|+-.+... ||+ +++ + +.++|.|+.+|.||+++...+. ..++++|+
T Consensus 37 s~ee~~~Ll~~~~~~~l~~L~~~A~~ir~~~-~G~------~v~l~~~in~Tn~C~~~C~YC~f~~~~~~~~~~ls~eEI 109 (371)
T PRK09240 37 SLEDLMALLSPAAEPYLEEMAQKAQRLTRQR-FGN------TISLYTPLYLSNYCANDCTYCGFSMSNKIKRKTLDEEEI 109 (371)
T ss_pred CHHHHHHHhCCCChhHHHHHHHHHHHHHHHH-cCC------EEEEEeceEEcccccCcCCcCCCCCCCCCccccCCHHHH
Confidence 46778888773 35888888888776653 343 444 2 3459999999999999864322 24899999
Q ss_pred HHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccc
Q 017200 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIET 242 (375)
Q Consensus 163 ~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEt 242 (375)
++.++.+.+.|+++|+|+||..+...+ .+++.++++.|++.+|.+.+++. .+ +.+.++.|+++|++.|+||+||
T Consensus 110 ~~~a~~~~~~Gv~~i~lvgGe~p~~~~--~e~l~~~i~~Ik~~~p~i~i~~g--~l--t~e~l~~Lk~aGv~r~~i~lET 183 (371)
T PRK09240 110 EREMAAIKKLGFEHILLLTGEHEAKVG--VDYIRRALPIAREYFSSVSIEVQ--PL--SEEEYAELVELGLDGVTVYQET 183 (371)
T ss_pred HHHHHHHHhCCCCEEEEeeCCCCCCCC--HHHHHHHHHHHHHhCCCceeccC--CC--CHHHHHHHHHcCCCEEEEEEec
Confidence 999999999999999999998765443 88999999999998888877653 22 7889999999999999999999
Q ss_pred h-HHHHHHhcC--CCCCHHHHHHHHHHHHHhCCCCce-EEEeEEEecCCCHHHHHHHHHHHHHcCCc------EEeeecC
Q 017200 243 V-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLGCGETPDQVVSTMEKVRAAGVD------VMTFGQY 312 (375)
Q Consensus 243 v-~rl~~~mr~--r~~s~~~~l~vl~~ak~~~p~Gl~-tkt~imvGlGET~ee~~etl~~Lrelgvd------~v~i~qY 312 (375)
. +++|+.|++ ++++|++++++++.|++ .|+. +++++|+|+||+.+|+++++..|+++++. .|+| +.
T Consensus 184 ~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~---aG~~~v~~g~i~Glge~~~d~~~~a~~l~~L~~~~~~~~~sv~~-~~ 259 (371)
T PRK09240 184 YNPATYAKHHLRGPKRDFEYRLETPERAGR---AGIRKIGLGALLGLSDWRTDALMTALHLRYLQRKYWQAEYSISF-PR 259 (371)
T ss_pred CCHHHHHHhCcCCCCCCHHHHHHHHHHHHH---cCCCeeceEEEecCCccHHHHHHHHHHHHHHHHhCCCCceeeec-Cc
Confidence 6 699999983 57899999999999999 6885 99999999999999999999999999874 6777 77
Q ss_pred CCCCC
Q 017200 313 MRPSK 317 (375)
Q Consensus 313 l~P~~ 317 (375)
++|..
T Consensus 260 l~P~~ 264 (371)
T PRK09240 260 LRPCT 264 (371)
T ss_pred cccCC
Confidence 88853
|
|
| >TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-25 Score=222.15 Aligned_cols=207 Identities=14% Similarity=0.159 Sum_probs=159.8
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC---CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCc-------------ccH
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAPP---PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD-------------QGS 192 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~~---~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d-------------~G~ 192 (375)
...|+.++|+|+.+|+||+++..++.. .+++||+++.|+.+.+.|+++|+||||.+++..- ...
T Consensus 4 ~n~~i~~tn~C~~~C~fCaf~~~~g~~~~~~l~~eeI~~~a~~~~~~G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~~~~ 83 (322)
T TIGR03550 4 RNVFIPLTRLCRNRCGYCTFRRPPGELEAALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAREWLAEMGYDSTL 83 (322)
T ss_pred ceEEeccccCcCCCCccCCccccCCCcccccCCHHHHHHHHHHHHHCCCCEEEEecCCCccccHHHHHHHHHhcCCccHH
Confidence 456788999999999999999865432 4899999999999999999999999998877640 113
Q ss_pred HHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccchH-HHHHHhcC---CCCCHHHHHHHHHHHH
Q 017200 193 GHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRD---HRANFKQSLDVLMMAK 268 (375)
Q Consensus 193 ~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~mr~---r~~s~~~~l~vl~~ak 268 (375)
+++.++++.|++.. ++...+....+ +.+.++.|+++|++ +.+++||+. ++++.++. ++.++++|+++++.|+
T Consensus 84 ~~~~~~~~~i~~e~-~~~~~~~~g~l--t~e~l~~Lk~aG~~-~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~~a~ 159 (322)
T TIGR03550 84 EYLRELCELALEET-GLLPHTNPGVM--SRDELARLKPVNAS-MGLMLETTSERLCKGEAHYGSPGKDPAVRLETIEDAG 159 (322)
T ss_pred HHHHHHHHHHHHhc-CCccccCCCCC--CHHHHHHHHhhCCC-CCcchhhhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 78889999998653 23333333333 78999999999987 589999875 76665542 3457899999999999
Q ss_pred HhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcC-----CcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhh
Q 017200 269 DYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAG-----VDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGF 343 (375)
Q Consensus 269 ~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelg-----vd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf 343 (375)
+ .|+.++++||+|+|||++|+++++..|++++ ++.+.+..| +|. +++|+.....++..+.++.+|..+=+
T Consensus 160 ~---~Gi~~~s~~i~G~gEt~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f-~P~-~gTpl~~~~~~s~~e~lr~iAv~Rl~ 234 (322)
T TIGR03550 160 R---LKIPFTTGILIGIGETREERAESLLAIRELHERYGHIQEVIVQNF-RAK-PGTPMENHPEPSLEEMLRTVAVARLI 234 (322)
T ss_pred H---cCCCccceeeEeCCCCHHHHHHHHHHHHHHHHHcCCCeEEecCcc-ccC-CCCCccCCCCCCHHHHHHHHHHHHHH
Confidence 9 5899999999999999999999999999998 555555455 673 36666544344567777777776444
Q ss_pred h
Q 017200 344 R 344 (375)
Q Consensus 344 ~ 344 (375)
+
T Consensus 235 l 235 (322)
T TIGR03550 235 L 235 (322)
T ss_pred c
Confidence 3
|
This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria. |
| >PRK07094 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-25 Score=217.19 Aligned_cols=217 Identities=15% Similarity=0.259 Sum_probs=169.5
Q ss_pred HHHHHHHhccChh---hhhhhcCCCCcccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCCCC---CCCCcchHHHHH
Q 017200 93 VQIKKKLRELKLH---TVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAP---PPPDPDEPTNVA 166 (375)
Q Consensus 93 ~~~~~~l~~~~L~---tvceeA~cpn~~ec~~~~~~~~~tatfm~i~d~C~~~C~FC~v~~~r~~---~~ld~eEi~~~a 166 (375)
+++..+|...+.. .+.+.|+-.+.. .+|+. -....++.++++|+.+|.||+++...+. ..++++++++.+
T Consensus 4 ~e~~~ll~~~~~~~~~~L~~~A~~~r~~-~~g~~---v~~~~~i~~s~gC~~~C~fC~~~~~~~~~~r~~ls~eei~~~~ 79 (323)
T PRK07094 4 DEILELLSNDDEEELKYLFKAADEVRKK-YVGDE---VHLRGLIEFSNYCRNNCLYCGLRRDNKNIERYRLSPEEILECA 79 (323)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHH-hCCCE---EEEEEEEEECCCCCCCCEeCCcccCCCCCcCcCCCHHHHHHHH
Confidence 4556666543322 355556544443 23331 1123346679999999999999865322 136899999999
Q ss_pred HHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccch-HH
Q 017200 167 EAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EE 245 (375)
Q Consensus 167 ~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~r 245 (375)
+.+.+.|+++|+|+||+.+.+. .+++.++++.|++. +++.+.+..... +.+.++.|+++|++.+.+++|+. ++
T Consensus 80 ~~~~~~g~~~i~l~gG~~~~~~---~~~l~~l~~~i~~~-~~l~i~~~~g~~--~~e~l~~Lk~aG~~~v~~glEs~~~~ 153 (323)
T PRK07094 80 KKAYELGYRTIVLQSGEDPYYT---DEKIADIIKEIKKE-LDVAITLSLGER--SYEEYKAWKEAGADRYLLRHETADKE 153 (323)
T ss_pred HHHHHCCCCEEEEecCCCCCCC---HHHHHHHHHHHHcc-CCceEEEecCCC--CHHHHHHHHHcCCCEEEeccccCCHH
Confidence 9999999999999999754433 57899999999886 567776544443 68999999999999999999987 59
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccc
Q 017200 246 LQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSE 324 (375)
Q Consensus 246 l~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~ 324 (375)
+++.++ ++++++++++.++.+++ .|+.+++++|+|+ |||.+|+.++++.+++++++.+++..|. |. .++|+..
T Consensus 154 ~~~~i~-~~~s~~~~~~~i~~l~~---~Gi~v~~~~iiGlpget~ed~~~~l~~l~~l~~~~v~~~~~~-P~-pgTpl~~ 227 (323)
T PRK07094 154 LYAKLH-PGMSFENRIACLKDLKE---LGYEVGSGFMVGLPGQTLEDLADDILFLKELDLDMIGIGPFI-PH-PDTPLKD 227 (323)
T ss_pred HHHHhC-CCCCHHHHHHHHHHHHH---cCCeecceEEEECCCCCHHHHHHHHHHHHhCCCCeeeeeccc-cC-CCCCccc
Confidence 999999 58999999999999999 5899999999999 9999999999999999999999996654 52 3566554
Q ss_pred c
Q 017200 325 Y 325 (375)
Q Consensus 325 ~ 325 (375)
.
T Consensus 228 ~ 228 (323)
T PRK07094 228 E 228 (323)
T ss_pred C
Confidence 3
|
|
| >PRK09234 fbiC FO synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=236.73 Aligned_cols=240 Identities=18% Similarity=0.152 Sum_probs=179.2
Q ss_pred HHHHHHHH--hccChhhhhhhcCCCCcccccCC-CCCCccEEEE-----eeeCCccCCCCcCCCCCCCCCC-C--CCCcc
Q 017200 92 YVQIKKKL--RELKLHTVCEEAKCPNLGECWSG-GETGTATATI-----MILGDTCTRGCRFCNVKTSRAP-P--PPDPD 160 (375)
Q Consensus 92 ~~~~~~~l--~~~~L~tvceeA~cpn~~ec~~~-~~~~~~tatf-----m~i~d~C~~~C~FC~v~~~r~~-~--~ld~e 160 (375)
.++...++ ++.+|..+++.|+-.+... +|+ +.. .++|| +.++|.|..+|.||+|++..+. . -+++|
T Consensus 29 ~eEa~~Ll~~~~~dl~~L~~~A~~vR~~~-~G~~~~~--~~Vty~~n~~In~Tn~C~~~C~YCaF~~~~~~~~~~~ls~e 105 (843)
T PRK09234 29 VDEAAVLLTARGDDLADLCASAARVRDAG-LGAAGRP--GVVTYSRKVFIPLTRLCRDRCHYCTFATVPGKLEAAYLSPD 105 (843)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHH-cCCcccC--ceEEEEeEEEecCCCCCCCCCCcCCCccCCCCCccccCCHH
Confidence 45555555 3456777888777655532 332 001 24544 4579999999999999875322 2 38999
Q ss_pred hHHHHHHHHHhcCCcEEEEEeeeCCCCC---------cc----cHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHH
Q 017200 161 EPTNVAEAIASWGLDYVVITSVDRDDLA---------DQ----GSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVRE 227 (375)
Q Consensus 161 Ei~~~a~al~~~G~~eIvLTsgdr~dl~---------d~----G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~ 227 (375)
||++.++++++.|+++++||||++++.. .. -.+++.++++.|++..+ +..++..+.+ +.+.++.
T Consensus 106 EIl~~a~~~~~~G~~e~l~t~G~~P~~~~~~~~~~l~~~gy~~~~ey~~~~~~~ik~~~g-l~p~i~~G~l--s~~E~~~ 182 (843)
T PRK09234 106 EVLDIARAGAAAGCKEALFTLGDRPEDRWPEAREWLDERGYDSTLDYVRAMAIRVLEETG-LLPHLNPGVM--SWSELAR 182 (843)
T ss_pred HHHHHHHHHHHCCCCEEEEecCCCCccccccccccccccccccHHHHHHHHHHHHHHhcC-CCceeeeCCC--CHHHHHH
Confidence 9999999999999999999999987753 11 15889999999998632 3333333444 7889999
Q ss_pred HHHcCcccccccccc-hHHHHHH------hcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHH
Q 017200 228 VAKSGLNVFAHNIET-VEELQSA------VRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVR 300 (375)
Q Consensus 228 L~~aGldv~~hnlEt-v~rl~~~------mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lr 300 (375)
|+++|++ +.+++|| ++++|+. ++ ++..+++||++++.|++ .|+.++|+||+|+|||.+|++++|..||
T Consensus 183 Lk~~g~s-~gl~lEt~~~~l~~~~g~~h~~~-P~K~~~~RL~ti~~A~~---lGi~~tsG~L~GiGEt~edRve~L~~LR 257 (843)
T PRK09234 183 LKPVAPS-MGMMLETTSRRLFEEKGGPHYGS-PDKDPAVRLRVLEDAGR---LSVPFTTGILIGIGETLAERAESLFAIR 257 (843)
T ss_pred HHHhcCc-CCCCHHHHHHHHHHhhcccccCC-CCCCHHHHHHHHHHHHH---cCCCccceEEEECCCCHHHHHHHHHHHH
Confidence 9999997 7899998 5688754 33 46789999999999999 6899999999999999999999999999
Q ss_pred HcC-----CcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhh
Q 017200 301 AAG-----VDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFR 344 (375)
Q Consensus 301 elg-----vd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~ 344 (375)
+++ ++.+.+ |.|+| ..++|+.....+...+.++.+|..+=++
T Consensus 258 ~Lq~~~g~~~evi~-~~F~p-~~gT~l~~~~~~s~~e~Lr~iAvaRliL 304 (843)
T PRK09234 258 KLHREYGHIQEVIV-QNFRA-KPDTAMAGVPDAGLEELLATIAVARLVL 304 (843)
T ss_pred HhhHhhCCCcEEee-ccccc-CCCCCCCCCCCCCHHHHHHHHHHHHHhC
Confidence 995 666777 44557 3466665544466677788888775443
|
|
| >TIGR02351 thiH thiazole biosynthesis protein ThiH | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-24 Score=216.16 Aligned_cols=223 Identities=17% Similarity=0.241 Sum_probs=177.4
Q ss_pred cHHHHHHHHhcc---ChhhhhhhcCCCCcccccCCCCCCccEEE-E--eeeCCccCCCCcCCCCCCCCCC--CCCCcchH
Q 017200 91 KYVQIKKKLREL---KLHTVCEEAKCPNLGECWSGGETGTATAT-I--MILGDTCTRGCRFCNVKTSRAP--PPPDPDEP 162 (375)
Q Consensus 91 ~~~~~~~~l~~~---~L~tvceeA~cpn~~ec~~~~~~~~~tat-f--m~i~d~C~~~C~FC~v~~~r~~--~~ld~eEi 162 (375)
..++...+|... .|..+++.|+-.+.. .+|+ +++ + +.++|.|+++|.||+++..... ..++++|+
T Consensus 36 s~~e~~~Ll~~~~~~~l~~L~~~A~~ir~~-~~G~------~v~l~~~i~~Tn~C~~~C~yC~~s~~~~~~~~~Ls~eEI 108 (366)
T TIGR02351 36 SLEDFLALLSPAAEPYLEEMAQKAKKLTRK-RFGN------TISLFTPLYLSNYCSNKCVYCGFSMSNKIKRKKLNEEEI 108 (366)
T ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHHHHH-HcCC------EEEEEeeeeECccccCCCCcCCCCCCCCCccCcCCHHHH
Confidence 367777777643 488888888765554 3443 344 3 3469999999999999864221 23899999
Q ss_pred HHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccc
Q 017200 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIET 242 (375)
Q Consensus 163 ~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEt 242 (375)
.+.++.+.+.|+++|+|+||..+...+ .+++.++++.|++.+|.+.|++. | + +.+.++.|+++|++.+.||+||
T Consensus 109 ~~~a~~~~~~Gv~~i~lvgGe~p~~~~--~e~l~eii~~Ik~~~p~i~Iei~-~-l--t~e~~~~Lk~aGv~r~~i~lET 182 (366)
T TIGR02351 109 EREIEAIKKSGFKEILLVTGESEKAAG--VEYIAEAIKLAREYFSSLAIEVQ-P-L--NEEEYKKLVEAGLDGVTVYQET 182 (366)
T ss_pred HHHHHHHHhCCCCEEEEeeCCCCCCCC--HHHHHHHHHHHHHhCCccccccc-c-C--CHHHHHHHHHcCCCEEEEEeec
Confidence 999999999999999999987766544 78999999999998888877753 2 3 7899999999999999999999
Q ss_pred h-HHHHHHhcC--CCCCHHHHHHHHHHHHHhCCCCce-EEEeEEEecCCCHHHHHHHHHHHHHcCC------cEEeeecC
Q 017200 243 V-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLGCGETPDQVVSTMEKVRAAGV------DVMTFGQY 312 (375)
Q Consensus 243 v-~rl~~~mr~--r~~s~~~~l~vl~~ak~~~p~Gl~-tkt~imvGlGET~ee~~etl~~Lrelgv------d~v~i~qY 312 (375)
. +++|+.|++ ++++|+++++.++.|++ .|+. +++++|+|+||+.+|.++++..|+++++ ..|+| +.
T Consensus 183 ~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~---aG~~~v~~g~i~Gl~e~~~d~~~~a~~l~~L~~~~~~~~~sv~~-~~ 258 (366)
T TIGR02351 183 YNEKKYKKHHLAGKKKDFRYRLNTPERAAK---AGMRKIGIGALLGLDDWRTDAFFTAYHLRYLQKKYWKTEISISV-PR 258 (366)
T ss_pred CCHHHHHhcCcCCCCCCHHHHHHHHHHHHH---cCCCeeceeEEEeCchhHHHHHHHHHHHHHHHHHcCCCCccccc-cc
Confidence 7 699999983 68899999999999999 6887 8999999999999999999999999887 56777 67
Q ss_pred CCCCCCCCCccccCCHHH
Q 017200 313 MRPSKRHMPVSEYITPEA 330 (375)
Q Consensus 313 l~P~~~~~~v~~~v~pe~ 330 (375)
++|.+..+.-...+++.+
T Consensus 259 l~P~~g~~~~~~~l~~~~ 276 (366)
T TIGR02351 259 LRPCTNGLKPKVIVTDRE 276 (366)
T ss_pred cccCCCCCCCCCcCCHHH
Confidence 888643222223344543
|
Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes. |
| >PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=216.11 Aligned_cols=214 Identities=17% Similarity=0.246 Sum_probs=171.9
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCC-CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~-~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p 207 (375)
..+|+.+++||+++|+||+++..+++ .+.++++++++++.+.+.|+++|+|+|++-..+... ...|++++++|.+...
T Consensus 154 ~~a~l~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~-~~~l~~Ll~~l~~~~~ 232 (449)
T PRK14332 154 IQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQ-STDFAGLIQMLLDETT 232 (449)
T ss_pred ceEEEEecCCcCCCCCCCCcccccCCcccCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCC-cccHHHHHHHHhcCCC
Confidence 57899999999999999999987654 358999999999999999999999999986655432 2458889888865432
Q ss_pred --CcEEEeecCCCCCChHHHHHHHHcC--cccccccccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEE
Q 017200 208 --NMLIEALVPDFRGNNGCVREVAKSG--LNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIM 282 (375)
Q Consensus 208 --~i~Ie~l~pd~~g~~e~l~~L~~aG--ldv~~hnlEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~im 282 (375)
.+++..+.|+.. +++.++.++++| +..+..++|+ ++++++.|+ |+++.+++++.++.+++..|. +.+.++||
T Consensus 233 ~~~ir~~~~~p~~~-~~ell~~m~~~~~~~~~l~lgvQSgsd~vLk~m~-R~~t~~~~~~~i~~lr~~~p~-i~i~td~I 309 (449)
T PRK14332 233 IERIRFTSPHPKDF-PDHLLSLMAKNPRFCPNIHLPLQAGNTRVLEEMK-RSYSKEEFLDVVKEIRNIVPD-VGITTDII 309 (449)
T ss_pred cceEEEECCCcccC-CHHHHHHHHhCCCccceEEECCCcCCHHHHHhhC-CCCCHHHHHHHHHHHHHhCCC-CEEEEEEE
Confidence 234434445433 788899999988 6677778896 569999999 899999999999999998775 88899999
Q ss_pred Eec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCC-C----ccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 283 LGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHM-P----VSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 283 vGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~-~----v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
+|| |||++|+.++++++++++++.++++.|. +|++... . +.+.+..++.++|.+++.++.+.+.
T Consensus 310 vGfPgET~edf~~tl~~v~~l~~~~~~~f~ys~~~GT~a~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~~ 380 (449)
T PRK14332 310 VGFPNETEEEFEDTLAVVREVQFDMAFMFKYSEREGTMAKRKLPDNVPEEVKSARLTKLVDLQTSISHEQN 380 (449)
T ss_pred eeCCCCCHHHHHHHHHHHHhCCCCEEEEEEecCCCCChhHHhCcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 9999999999999999999999999996 5644332 1 3333445678888888888777654
|
|
| >PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=216.02 Aligned_cols=215 Identities=15% Similarity=0.249 Sum_probs=173.7
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCc-ccHHHHHHHHHHHHHhC
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD-QGSGHFAQTVRKLKELK 206 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~~-~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d-~G~~~~~~lir~Ik~~~ 206 (375)
+..|+.+++||+.+|+||+++..++.. +.++++++++++.+.+.|+++|+|+|++-..+.| .+...+.++++.|.+..
T Consensus 149 ~~a~l~isrGC~~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~~~~l~~Ll~~l~~~~ 228 (445)
T PRK14340 149 ISAFVPVMRGCNNMCAFCVVPFTRGRERSHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEAGADFAGLLDAVSRAA 228 (445)
T ss_pred cEEEEEeccCCCCCCCCCCcccccCCCcCCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCCCchHHHHHHHHhhcC
Confidence 678999999999999999999776543 5899999999999999999999999998554433 12245889999987655
Q ss_pred CCcEEE--eecCCCCCChHHHHHHHHc--Ccccccccccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE
Q 017200 207 PNMLIE--ALVPDFRGNNGCVREVAKS--GLNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI 281 (375)
Q Consensus 207 p~i~Ie--~l~pd~~g~~e~l~~L~~a--Gldv~~hnlEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~i 281 (375)
+..+|. ...|+.. +++.++.++++ |+..+..++|+ ++++++.|+ |+++.+++++.++.+++..|+ +.+.++|
T Consensus 229 ~~~rir~~~~~p~~l-~~ell~~~~~~~~g~~~l~iglQSgsd~vLk~m~-R~~t~~~~~~~v~~lr~~~pg-i~i~td~ 305 (445)
T PRK14340 229 PEMRIRFTTSHPKDI-SESLVRTIAARPNICNHIHLPVQSGSSRMLRRMN-RGHTIEEYLEKIALIRSAIPG-VTLSTDL 305 (445)
T ss_pred CCcEEEEccCChhhc-CHHHHHHHHhCCCCCCeEEECCCcCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCC-CEEeccE
Confidence 555554 4556543 68899999886 67888888996 569999999 899999999999999998764 9999999
Q ss_pred EEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCC-ccccCC----HHHHHHHHHHHHHhhhhhh
Q 017200 282 MLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMP-VSEYIT----PEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 282 mvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~-v~~~v~----pe~~~~l~~~a~~~gf~~~ 346 (375)
|+|| |||++++.++++++++++++.++++.|. +|++.... +.+.|. .++.++|.+++.++...+.
T Consensus 306 IvGfPgET~edf~~tl~~~~~~~~~~~~~f~~sp~pGT~~~~~~~~~v~~~~~~~R~~~l~~l~~~~~~~~~ 377 (445)
T PRK14340 306 IAGFCGETEEDHRATLSLMEEVRFDSAFMFYYSVRPGTLAARTLPDDVPEEVKKRRLQEIIDLQNGISAELF 377 (445)
T ss_pred EEECCCCCHHHHHHHHHHHHhcCCCEEeeEEecCCCCChhhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 9999999999999999999999998885 56443221 223343 5678888888888766554
|
|
| >PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-23 Score=217.36 Aligned_cols=216 Identities=17% Similarity=0.255 Sum_probs=173.4
Q ss_pred cEEEEeeeCCccCCCCcCCCCCCCCCCC-CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCC-cc-c-HHHHHHHHHHHH
Q 017200 128 ATATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-DQ-G-SGHFAQTVRKLK 203 (375)
Q Consensus 128 ~tatfm~i~d~C~~~C~FC~v~~~r~~~-~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~-d~-G-~~~~~~lir~Ik 203 (375)
.+.+|+.+++||+++|+||+++..++.. +.++++++++++.+.+.|+++|.|+|++-..+. |. + ...|.++++.|.
T Consensus 211 ~~~a~v~I~~GC~~~CsFC~vp~~rG~~Rsr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~I~ 290 (509)
T PRK14327 211 NIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLMDEIR 290 (509)
T ss_pred CeEEEEEecCCCCCCCcCCcccccCCCCeeCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHHHHHH
Confidence 3789999999999999999999766543 589999999999999999999999999754442 11 1 134788888887
Q ss_pred Hh-CCCcEEEeecCCCCCChHHHHHHHHcC--cccccccccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEE
Q 017200 204 EL-KPNMLIEALVPDFRGNNGCVREVAKSG--LNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKT 279 (375)
Q Consensus 204 ~~-~p~i~Ie~l~pd~~g~~e~l~~L~~aG--ldv~~hnlEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt 279 (375)
+. .+.+++..+.|+.. +++.++.++++| +..+..++|+ ++++++.|+ |+++.+++++.++.+++.+|. +.+.+
T Consensus 291 ~~~i~~ir~~s~~P~~i-~deli~~m~~~g~~~~~l~lgvQSgsd~vLk~M~-R~~t~e~~~~~v~~lr~~~p~-i~i~t 367 (509)
T PRK14327 291 KIDIPRVRFTTSHPRDF-DDHLIEVLAKGGNLVEHIHLPVQSGSTEVLKIMA-RKYTRESYLELVRKIKEAIPN-VALTT 367 (509)
T ss_pred hCCCceEEEeecCcccC-CHHHHHHHHhcCCccceEEeccCCCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCC-cEEee
Confidence 64 23455555667543 789999999998 4567788996 569999999 899999999999999998775 88999
Q ss_pred eEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCC----ccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 280 SIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMP----VSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 280 ~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~----v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
+||+|| |||+|++.++++++++++++.++++.|. +|++.... |...+..+++++|.+++.++...+.
T Consensus 368 diIvGfPgET~edf~~Tl~~v~~l~~d~~~~f~ysprpGT~a~~~~~~vp~~vk~~R~~~l~~l~~~~~~~~~ 440 (509)
T PRK14327 368 DIIVGFPNETDEQFEETLSLYREVGFDHAYTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNALVNEYSAKKM 440 (509)
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEeeeeCCCCCchHhCcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 9999999999999999999999998885 56443322 3333445688899888887765443
|
|
| >PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-23 Score=212.70 Aligned_cols=215 Identities=18% Similarity=0.243 Sum_probs=171.3
Q ss_pred cEEEEeeeCCccCCCCcCCCCCCCCCC-CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCC-c----ccHHHHHHHHHH
Q 017200 128 ATATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-D----QGSGHFAQTVRK 201 (375)
Q Consensus 128 ~tatfm~i~d~C~~~C~FC~v~~~r~~-~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~-d----~G~~~~~~lir~ 201 (375)
.+..|+.+++||+++|+||+++..+++ .+.++++++++++.+.+.|+++|+|+|.+-..+. | .+...|.++++.
T Consensus 126 ~~~a~i~isrGC~~~CsFC~ip~~rG~~~sr~~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~Ll~~ 205 (420)
T PRK14339 126 PYKSLVNISIGCDKKCTYCIVPHTRGKEISIPMDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSDLLDK 205 (420)
T ss_pred CeEEEEEecCCCCCCCCcCCcccccCCCCCCCHHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHHHHHH
Confidence 378999999999999999999987654 3589999999999999999999999999854432 1 012348888888
Q ss_pred HHHhCCC---cEEEeecCCCCCChHHHHHHHHc--Ccccccccccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCc
Q 017200 202 LKELKPN---MLIEALVPDFRGNNGCVREVAKS--GLNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGT 275 (375)
Q Consensus 202 Ik~~~p~---i~Ie~l~pd~~g~~e~l~~L~~a--Gldv~~hnlEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl 275 (375)
|.+. ++ +++..+.|+.. +++.++.++++ |+..+..++|+ ++++++.|+ |+++.+++++.++.+++..|. +
T Consensus 206 l~~~-~g~~~ir~~s~~p~~~-~~ell~~~~~~~~~~~~l~iglQSgsd~vLk~M~-R~~t~~~~~~~v~~lr~~~p~-i 281 (420)
T PRK14339 206 LSEI-EGLERIRFTSPHPLHM-DDKFLEEFAKNPKICKSIHMPLQSGSSEILKAMK-RGYTKEWFLNRAEKLRALVPE-V 281 (420)
T ss_pred HhcC-CCccEEEECCCChhhc-CHHHHHHHHcCCCccCceEeCCccCCHHHHHhcc-CCCCHHHHHHHHHHHHHHCCC-C
Confidence 8653 33 34433455433 78899999887 46777888996 579999999 899999999999999998775 8
Q ss_pred eEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCC----ccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 276 LTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMP----VSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 276 ~tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~----v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
.+.+++|+|| |||++|+.++++++++++++.++++.|. +|++.... |...+..++.++|.+++.++.+.+.
T Consensus 282 ~i~~d~IvGfPgETeedf~~Tl~fl~~l~~~~~~~f~~sp~pGT~a~~~~~~v~~~~k~~R~~~l~~~~~~~~~~~~ 358 (420)
T PRK14339 282 SISTDIIVGFPGESDKDFEDTMDVLEKVRFEQIFSFKYSPRPLTEAAAWKNQVDEEVASERLERLQNRHKEILDEIA 358 (420)
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHhcCCCEEeeEecCCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999 9999999999999999999999998885 55443222 3334456678888888888776654
|
|
| >PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.5e-23 Score=210.41 Aligned_cols=231 Identities=12% Similarity=0.223 Sum_probs=179.1
Q ss_pred CccHHHHHHHHhcc---ChhhhhhhcCCCCcccccCCCCCCccEEEE--eeeCCccCCCCcCCCCCCCCC-CC--CCCcc
Q 017200 89 GDKYVQIKKKLREL---KLHTVCEEAKCPNLGECWSGGETGTATATI--MILGDTCTRGCRFCNVKTSRA-PP--PPDPD 160 (375)
Q Consensus 89 ~~~~~~~~~~l~~~---~L~tvceeA~cpn~~ec~~~~~~~~~tatf--m~i~d~C~~~C~FC~v~~~r~-~~--~ld~e 160 (375)
+-+.+++..+|... .|..+.+.|+-.+.. .||+. ...| +.++|.|.++|.||+|+.... .. .+++|
T Consensus 45 ~Ls~eEal~LL~~~~~~~le~L~~~A~~ir~~-~~Gn~-----I~lfapLyiSN~C~n~C~YCgfs~~n~~i~r~~Ls~E 118 (469)
T PRK09613 45 GLSPEEAAVLLNVEDPELLEEIFEAAREIKEK-IYGNR-----IVLFAPLYISNYCVNNCVYCGFRRSNKEIKRKKLTQE 118 (469)
T ss_pred CCCHHHHHHHHcCCChhHHHHHHHHHHHHHHH-HcCCE-----EEEEEeccccCCCCCCCccCCCccCCCCCCceECCHH
Confidence 35578888888754 377788888765553 34543 3444 446999999999999997543 22 38999
Q ss_pred hHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC---Cc-EEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 161 EPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP---NM-LIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 161 Ei~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p---~i-~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
||++.++++.+.|+++++|+||.++ ++.+.+++.++|+.|++..+ .+ .|.+-.+.+ +.+.++.|+++|++.|
T Consensus 119 EI~~ea~~~~~~G~~~i~LvsGe~p--~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~l--t~eey~~LkeaGv~~~ 194 (469)
T PRK09613 119 EIREEVKALEDMGHKRLALVAGEDP--PNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPT--TVENYKKLKEAGIGTY 194 (469)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCC--CCCCHHHHHHHHHHHHHhccccCcceeeEEEeecC--CHHHHHHHHHcCCCEE
Confidence 9999999999999999999998763 22338999999999997532 21 233334444 7899999999999999
Q ss_pred cccccchH-HHHHHhcC--CCCCHHHHHHHHHHHHHhCCCCce-EEEeEEEecCCCHHHHHHHHHHHHHc------CCcE
Q 017200 237 AHNIETVE-ELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLGCGETPDQVVSTMEKVRAA------GVDV 306 (375)
Q Consensus 237 ~hnlEtv~-rl~~~mr~--r~~s~~~~l~vl~~ak~~~p~Gl~-tkt~imvGlGET~ee~~etl~~Lrel------gvd~ 306 (375)
.+++||.+ ++|++++| ++++|++++++++.|++ .|+. +++|+|+|+||+.+|++.++..++.+ |++.
T Consensus 195 ~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~---aGi~~Vg~G~L~GLge~~~E~~~l~~hl~~L~~~~gvgp~t 271 (469)
T PRK09613 195 QLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAME---AGIDDVGIGVLFGLYDYKFEVLGLLMHAEHLEERFGVGPHT 271 (469)
T ss_pred EeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHH---cCCCeeCeEEEEcCCCCHHHHHHHHHHHHHHHHhhCCCCcc
Confidence 99999965 99999974 37899999999999999 6897 99999999999999999999999888 5777
Q ss_pred EeeecCCCCCCCCCCcccc---CCHHHHHHH
Q 017200 307 MTFGQYMRPSKRHMPVSEY---ITPEAFERY 334 (375)
Q Consensus 307 v~i~qYl~P~~~~~~v~~~---v~pe~~~~l 334 (375)
|+| +.++|. .++|+... +.++++..+
T Consensus 272 Isv-prl~P~-~Gtpl~~~~~~vsd~e~lri 300 (469)
T PRK09613 272 ISV-PRLRPA-DGSDLENFPYLVSDEDFKKI 300 (469)
T ss_pred ccc-cceecC-CCCCcccCCCCCCHHHHHHH
Confidence 888 788894 46665322 455544333
|
|
| >PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.9e-23 Score=211.42 Aligned_cols=215 Identities=19% Similarity=0.268 Sum_probs=171.9
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCC-CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCC-cc-c-----HHHHHHHHH
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-DQ-G-----SGHFAQTVR 200 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~-~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~-d~-G-----~~~~~~lir 200 (375)
+..|+.+++||+.+|+||+++..+++ .+.++++++++++.+.+.|+++|+|++.+-+++. |. + ...|.++++
T Consensus 168 ~~a~i~isrGCp~~CsFC~ip~~~G~~rsrs~e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~~Ll~ 247 (467)
T PRK14329 168 VSAFVSIMRGCDNMCTFCVVPFTRGRERSRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQLLE 247 (467)
T ss_pred cEEEEEeccCcccCCCCCccccccCCcccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccCCccccccccHHHHHH
Confidence 67899999999999999999876654 3589999999999999999999999998755442 21 1 236889999
Q ss_pred HHHHhCCCcEEE--eecCCCCCChHHHHHHHHc--Ccccccccccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCc
Q 017200 201 KLKELKPNMLIE--ALVPDFRGNNGCVREVAKS--GLNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGT 275 (375)
Q Consensus 201 ~Ik~~~p~i~Ie--~l~pd~~g~~e~l~~L~~a--Gldv~~hnlEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl 275 (375)
.|.+..+...|. ...|+.. +++.++.|+++ |+..+..++|+ ++++++.|+ |+++.++++++++.+++..|. +
T Consensus 248 ~l~~~~~~~~ir~~~~~p~~l-~~ell~~m~~~~~g~~~i~iglQSgsd~vLk~m~-R~~t~~~~~~~i~~ir~~~~~-~ 324 (467)
T PRK14329 248 MVAEAVPDMRIRFSTSHPKDM-TDDVLEVMAKYDNICKHIHLPVQSGSDRILKLMN-RKYTREWYLDRIDAIRRIIPD-C 324 (467)
T ss_pred HHHhcCCCcEEEEecCCcccC-CHHHHHHHHhCCCCCCeEEeCCCcCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCC-C
Confidence 988765554444 4556544 68899999887 78888889996 569999999 899999999999999998765 8
Q ss_pred eEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCC-----ccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 276 LTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMP-----VSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 276 ~tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~-----v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
.+.++||+|| |||+|++.++++++++++++.++++.|. +|++.... +...+..++..+|.+++.++...+.
T Consensus 325 ~i~~d~IvGfPgET~edf~~tl~~i~~l~~~~~~v~~~sp~pGT~~~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~~ 402 (467)
T PRK14329 325 GISTDMIAGFPTETEEDHQDTLSLMEEVGYDFAFMFKYSERPGTYAARKLEDDVPEEVKKRRLNEIIALQQELSLERN 402 (467)
T ss_pred EEEEeEEEeCCCCCHHHHHHHHHHHHhhCCCeEeeeEecCCCCChhhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999 9999999999999999999999998886 55433221 2223334567888888877666553
|
|
| >PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.6e-23 Score=209.70 Aligned_cols=216 Identities=15% Similarity=0.247 Sum_probs=172.3
Q ss_pred cEEEEeeeCCccCCCCcCCCCCCCCCCC-CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCC--c--ccHHHHHHHHHHH
Q 017200 128 ATATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA--D--QGSGHFAQTVRKL 202 (375)
Q Consensus 128 ~tatfm~i~d~C~~~C~FC~v~~~r~~~-~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~--d--~G~~~~~~lir~I 202 (375)
.+..|+.+++||+++|+||+++..++.. +.++++++++++.+.+.|+++|+|+|++-..+. | +....+.++++.|
T Consensus 151 ~~~~~i~I~rGC~~~CsfC~~p~~rG~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~~l 230 (455)
T PRK14335 151 SFQSFIPIMNGCNNFCSYCIVPYVRGREISRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLRHI 230 (455)
T ss_pred CceEEEEhhcCCCCCCCCCCcccCCCCCccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccccCCccCHHHHHHHH
Confidence 3778999999999999999999866543 588999999999999999999999999754442 1 1123588999888
Q ss_pred HHh---CCCc-EEEe--ecCCCCCChHHHHHHHH--cCcccccccccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Q 017200 203 KEL---KPNM-LIEA--LVPDFRGNNGCVREVAK--SGLNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPA 273 (375)
Q Consensus 203 k~~---~p~i-~Ie~--l~pd~~g~~e~l~~L~~--aGldv~~hnlEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~ 273 (375)
.+. .+++ ++.. +.|+.. +.+.++.|++ +|+..+..++|+ ++++++.|+ |+++.++++++++.+++..|.
T Consensus 231 ~~~~~~~~~i~~ir~~s~~p~~i-~~ell~~m~~~~~gc~~l~iglQSgsd~vLk~m~-R~~t~e~~~~~v~~ir~~~pg 308 (455)
T PRK14335 231 VRRAEVTDQIRWIRFMSSHPKDL-SDDLIATIAQESRLCRLVHLPVQHGSNGVLKRMN-RSYTREHYLSLVGKLKASIPN 308 (455)
T ss_pred HHhhcccCCceEEEEeecCcccC-CHHHHHHHHhCCCCCCeEEEccCcCCHHHHHHcC-CCCCHHHHHHHHHHHHHhCCC
Confidence 532 2222 4443 556543 7889999988 478888888996 579999999 899999999999999997764
Q ss_pred CceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCC----ccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 274 GTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMP----VSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 274 Gl~tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~----v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
+.+.++||+|| |||++++.++++++++++++.++++.|. +|++.... |...+..++.++|.+++.++...+.
T Consensus 309 -i~i~~d~IvGfPgET~edf~~Tl~~i~~l~~~~~~~~~~sp~pGT~~~~~~~~v~~~~k~~R~~~l~~~~~~~~~~~~ 386 (455)
T PRK14335 309 -VALSTDILIGFPGETEEDFEQTLDLMREVEFDSAFMYHYNPREGTPAYDFPDRIPDEVKIARLQRVIALQMSITLKKM 386 (455)
T ss_pred -CEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEEecCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999999999999885 56443322 3344455688899999888777664
|
|
| >PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.5e-23 Score=207.68 Aligned_cols=215 Identities=16% Similarity=0.194 Sum_probs=169.4
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCC-CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCC-cc-cHHHHHHHHHHHHHh
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-DQ-GSGHFAQTVRKLKEL 205 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~-~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~-d~-G~~~~~~lir~Ik~~ 205 (375)
+..|+.+++||+++|+||+++..+++ .+.++++++++++.+.+.|+++|+|+|++-..+. |. +...|.++++.|++.
T Consensus 124 ~~a~i~i~rGC~~~CsFC~ip~~rG~~rsrs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~ 203 (418)
T PRK14336 124 VSANVTIMQGCDNFCTYCVVPYRRGREKSRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSALHDI 203 (418)
T ss_pred eEEEEEeccCCCCCCccCCccccCCCCccCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHHHhc
Confidence 77899999999999999999987654 3589999999999999999999999999743331 21 124588999998764
Q ss_pred CCCcEEE--eecCCCCCChHHHHHHHHcC--cccccccccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017200 206 KPNMLIE--ALVPDFRGNNGCVREVAKSG--LNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (375)
Q Consensus 206 ~p~i~Ie--~l~pd~~g~~e~l~~L~~aG--ldv~~hnlEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~ 280 (375)
....+|. ...|+.. +++.++.+++.+ +..+..++|+ ++++++.|+ |+++.+++.+.++.+++..|. +.+.++
T Consensus 204 ~~~~~ir~~~~~p~~i-~~ell~~l~~~~~~~~~l~lglQSgsd~vLk~M~-R~~~~~~~~~~i~~lr~~~pg-i~i~~d 280 (418)
T PRK14336 204 PGLLRIRFLTSHPKDI-SQKLIDAMAHLPKVCRSLSLPVQAGDDTILAAMR-RGYTNQQYRELVERLKTAMPD-ISLQTD 280 (418)
T ss_pred CCccEEEEeccChhhc-CHHHHHHHHhcCccCCceecCCCcCCHHHHHHhC-CCCCHHHHHHHHHHHHhhCCC-CEEEEE
Confidence 2223454 4456544 688899888854 6777777886 569999999 899999999999999998765 999999
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCC-----CccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHM-----PVSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 281 imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~-----~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
+|+|| |||++++.++++++++++++.++++.|. +|++... +|...+..++.+.|++++.+....+.
T Consensus 281 ~IvGfPGET~edf~~tl~fi~~~~~~~~~v~~ysp~pGT~a~~~~~~~v~~~~k~~R~~~l~~~~~~~~~~~~ 353 (418)
T PRK14336 281 LIVGFPSETEEQFNQSYKLMADIGYDAIHVAAYSPRPQTVAARDMADDVPVIEKKRRLKLIEDLQKETVGKAN 353 (418)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCEEEeeecCCCCCChhHhhCccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999999886 4543222 13333445577888888887766553
|
|
| >PRK06245 cofG FO synthase subunit 1; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=201.52 Aligned_cols=206 Identities=16% Similarity=0.227 Sum_probs=145.8
Q ss_pred EEEE-----eeeCCccCCCCcCCCCCCCCCC-CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCC---------cccHH
Q 017200 129 TATI-----MILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA---------DQGSG 193 (375)
Q Consensus 129 tatf-----m~i~d~C~~~C~FC~v~~~r~~-~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~---------d~G~~ 193 (375)
.+|| +.++|+|+.+|+||+++..++. ..+++||+++.++++++.|+++|+||||+.+++. +.|+.
T Consensus 7 ~vt~~~~~~i~~Tn~C~~~C~fC~~~~~~~~~~~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~~~~~~~~~~~~g~~ 86 (336)
T PRK06245 7 IVTYSRNVFIPLTYECRNRCGYCTFRRDPGQPSLLSPEEVKEILRRGADAGCTEALFTFGEVPDESYERIKEQLAEMGYS 86 (336)
T ss_pred eeEeecceeeeccccccCCCccCCCcCCCCccCcCCHHHHHHHHHHHHHCCCCEEEEecCCCCccchhhhhhhhhhhhHH
Confidence 5666 4579999999999999986533 3599999999999999999999999999886654 12233
Q ss_pred HHHHHHHHHHHhCC--CcEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcC--CCCCHHHHHHHHHHHH
Q 017200 194 HFAQTVRKLKELKP--NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAK 268 (375)
Q Consensus 194 ~~~~lir~Ik~~~p--~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~--r~~s~~~~l~vl~~ak 268 (375)
.+.+.+++|.+... ++.. .+.|... +.+.++.|+++|+. +.+++|+. +.+++.|+. ++.++++++++++.++
T Consensus 87 ~~~~~i~~i~~~~~~~g~~~-~~~~~~l-t~e~i~~Lk~ag~~-l~~~~et~~e~l~~~v~~~~~~~~~~~~l~~i~~a~ 163 (336)
T PRK06245 87 SILEYLYDLCELALEEGLLP-HTNAGIL-TREEMEKLKEVNAS-MGLMLEQTSPRLLNTVHRGSPGKDPELRLETIENAG 163 (336)
T ss_pred HHHHHHHHHHHHHhhcCCCc-cccCCCC-CHHHHHHHHHhCCC-CCCCccccchhhHHhhccCCCCCCHHHHHHHHHHHH
Confidence 45555555543211 1111 1223222 78899999998865 57788976 478766631 4668999999999999
Q ss_pred HhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcC-----CcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhh
Q 017200 269 DYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAG-----VDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMG 342 (375)
Q Consensus 269 ~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelg-----vd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~g 342 (375)
+ .|+.++++||+|+|||++|++++|..+++++ ++.+.+..| .|. .++++.....+...+.++.+|..+-
T Consensus 164 ~---~Gi~~~~~~i~G~gEt~ed~~~~l~~l~~l~~~~gg~~~~~~~~f-~P~-~~T~~~~~~~~s~~e~l~~ia~~Rl 237 (336)
T PRK06245 164 K---LKIPFTTGILIGIGETWEDRAESLEAIAELHERYGHIQEVIIQNF-SPK-PGIPMENHPEPSLEEMLRVVALARL 237 (336)
T ss_pred H---cCCceeeeeeeECCCCHHHHHHHHHHHHHHHHhhCCCcEEecCCC-cCC-CCCCcccCCCcCHHHHHHHHHHHHH
Confidence 8 5899999999999999999999999999997 455666444 563 2444433222333444554554433
|
|
| >PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-22 Score=207.56 Aligned_cols=215 Identities=18% Similarity=0.296 Sum_probs=171.7
Q ss_pred cEEEEeeeCCccCCCCcCCCCCCCCCCC-CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCC-Ccc--cHHHHHHHHHHHH
Q 017200 128 ATATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDL-ADQ--GSGHFAQTVRKLK 203 (375)
Q Consensus 128 ~tatfm~i~d~C~~~C~FC~v~~~r~~~-~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl-~d~--G~~~~~~lir~Ik 203 (375)
.+..|+.+++||+++|+||+++..+++. +.++++++++++.+.+.|+++|+|++.+-..+ .|. +...|.++++.|.
T Consensus 147 ~~~a~v~i~rGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~~l~ 226 (446)
T PRK14337 147 PASAFVNIMQGCDNFCAYCIVPYTRGRQKSRSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLLHKVA 226 (446)
T ss_pred CcEEEEEeccCCCCCCcCCCcccCCCCCeeCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHHHHHH
Confidence 3678999999999999999998766543 58999999999999999999999999874333 121 1135888898887
Q ss_pred HhCCCc-EEE--eecCCCCCChHHHHHHHHc--Ccccccccccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceE
Q 017200 204 ELKPNM-LIE--ALVPDFRGNNGCVREVAKS--GLNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLT 277 (375)
Q Consensus 204 ~~~p~i-~Ie--~l~pd~~g~~e~l~~L~~a--Gldv~~hnlEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~t 277 (375)
+. +++ +|. .+.|+.. +++.++.+++. |+..+..++|+ ++++++.|+ |+++.++++++++.+++..|+ +.+
T Consensus 227 ~~-~g~~~ir~~~~~p~~i-~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~-R~~t~e~~~~~v~~lr~~~~~-i~i 302 (446)
T PRK14337 227 AL-PGLERLRFTTPHPKDI-APEVIEAFGELPNLCPRLHLPLQSGSDRILKAMG-RKYDMARYLDIVTDLRAARPD-IAL 302 (446)
T ss_pred hc-CCCcEEEEccCCcccC-CHHHHHHHHhCCcccCeEEECCCCCCHHHHHhCC-CCCCHHHHHHHHHHHHHhCCC-CeE
Confidence 64 333 344 4456443 68889999884 46778888996 469999999 899999999999999998765 899
Q ss_pred EEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCC----ccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 278 KTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMP----VSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 278 kt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~----v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
.+++|+|| |||+||+.++++++++++++.++++.|. +|++.... |...+..++.++|++++.++...+.
T Consensus 303 ~~d~IvG~PgET~ed~~~tl~~l~~~~~~~~~~f~ysp~pgT~a~~~~~~v~~~vk~~R~~~l~~~~~~~~~~~~ 377 (446)
T PRK14337 303 TTDLIVGFPGETEEDFEQTLEAMRTVGFASSFSFCYSDRPGTRAEMLPGKVPEEVKSARLARLQELQNELTERWL 377 (446)
T ss_pred EEeEEEECCCCCHHHHHHHHHHHHhcCCCeeEEEecCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999998885 66554333 3344555688889888888777654
|
|
| >TIGR00433 bioB biotin synthetase | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=194.75 Aligned_cols=198 Identities=15% Similarity=0.268 Sum_probs=149.4
Q ss_pred eee-CCccCCCCcCCCCCCCCC---C--CCCCcchHHHHHHHHHhcCCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHHh
Q 017200 133 MIL-GDTCTRGCRFCNVKTSRA---P--PPPDPDEPTNVAEAIASWGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKEL 205 (375)
Q Consensus 133 m~i-~d~C~~~C~FC~v~~~r~---~--~~ld~eEi~~~a~al~~~G~~eIvLTs-gdr~dl~d~G~~~~~~lir~Ik~~ 205 (375)
+.+ |++|+.+|.||+++.... . ..++++|+++.++.+.+.|++.++|++ |..++..+ ...+++.+..+++.
T Consensus 32 ~~i~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~~~--~~~~~~~i~~~~~~ 109 (296)
T TIGR00433 32 MNIKSGGCPEDCKYCSQSSRSKTGLPIERLKKVDEVLEEARKAKAAGATRFCLVASGRGPKDRE--FMEYVEAMVQIVEE 109 (296)
T ss_pred EecccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEEecCCCChHH--HHHHHHHHHHHHHh
Confidence 444 999999999999976421 1 137889999999999999999886654 43332111 12233333333333
Q ss_pred CCCcEEEeecCCCCCChHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec
Q 017200 206 KPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 285 (375)
Q Consensus 206 ~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl 285 (375)
. ++.+.+..+.. +.|.++.|+++|++.+.+++|+.+++++.++ ++++++++++.++.+++ .|+.+.+++|+|+
T Consensus 110 ~-~i~~~~~~g~~--~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~-~~~s~~~~~~ai~~l~~---~Gi~v~~~~i~Gl 182 (296)
T TIGR00433 110 M-GLKTCATLGLL--DPEQAKRLKDAGLDYYNHNLDTSQEFYSNII-STHTYDDRVDTLENAKK---AGLKVCSGGIFGL 182 (296)
T ss_pred C-CCeEEecCCCC--CHHHHHHHHHcCCCEEEEcccCCHHHHhhcc-CCCCHHHHHHHHHHHHH---cCCEEEEeEEEeC
Confidence 2 46554433323 7899999999999999999997779999999 68999999999999999 5899999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHh
Q 017200 286 GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEM 341 (375)
Q Consensus 286 GET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~ 341 (375)
|||.+|+.++++.+++++++.+++. .+.|. +++++..+..++..+.++.+|..+
T Consensus 183 ~et~~d~~~~~~~l~~l~~~~i~l~-~l~p~-~gT~l~~~~~~s~~~~~~~ia~~r 236 (296)
T TIGR00433 183 GETVEDRIGLALALANLPPESVPIN-FLVKI-KGTPLADNKELSADDALKTIALAR 236 (296)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEee-eeEEc-CCCccCCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999884 44563 366666655556666666666553
|
Catalyzes the last step of the biotin biosynthesis pathway. |
| >TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-22 Score=206.33 Aligned_cols=215 Identities=16% Similarity=0.220 Sum_probs=168.4
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCC-C-c--ccHHHHHHHHHHHH
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDL-A-D--QGSGHFAQTVRKLK 203 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~~-~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl-~-d--~G~~~~~~lir~Ik 203 (375)
+..|+.+++||+++|+||+++..+++. .+++++++++++.+++.|+++|+|+|.+-..+ . | ++...|.++++.|.
T Consensus 145 ~~~~v~i~rGC~~~CsfC~~~~~~G~~rsr~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~g~d~~~~~~~l~~Ll~~l~ 224 (438)
T TIGR01574 145 YKSFINIMIGCNKFCTYCIVPYTRGDEISRPFDDILQEVQKLAEKGVREITLLGQNVNAYRGKDFEGKTMDFSDLLRELS 224 (438)
T ss_pred eeEEeehhcCCCCCCCCCCeeeecCCCcccCHHHHHHHHHHHHHcCCeEEEEEecccCCccCCCCCCCcccHHHHHHHHH
Confidence 678999999999999999998766543 58999999999999999999999999875444 1 1 12235889999987
Q ss_pred HhCCCcEEE--eecCCCCCChHHHHHHHHcC--cccccccccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEE
Q 017200 204 ELKPNMLIE--ALVPDFRGNNGCVREVAKSG--LNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTK 278 (375)
Q Consensus 204 ~~~p~i~Ie--~l~pd~~g~~e~l~~L~~aG--ldv~~hnlEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tk 278 (375)
+.....++. .+.|+.. +++.++.|+++| ...+..++|+ ++++++.|+ |+++.+++++.++.+++..|. +.+.
T Consensus 225 ~~~~~~~ir~~~~~p~~l-~~ell~~l~~~g~~~~~l~iglQSgsd~vLk~m~-R~~t~~~~~~~v~~ir~~~~~-i~i~ 301 (438)
T TIGR01574 225 TIDGIERIRFTSSHPLDF-DDDLIEVFANNPKLCKSMHLPVQSGSSEILKLMK-RGYTREWYLNLVRKLRAACPN-VSIS 301 (438)
T ss_pred hcCCceEEEEecCCcccC-CHHHHHHHHhCCCccCceeeCCCcCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCC-CeEe
Confidence 542222343 3456433 788999999998 7788888996 569999999 899999999999999997664 8899
Q ss_pred EeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCCccccCC----HHHHHHHHHHHHHhhhhhh
Q 017200 279 TSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYIT----PEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 279 t~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~v~~~v~----pe~~~~l~~~a~~~gf~~~ 346 (375)
++||+|| |||++++.++++++++++++.+++++|. +|++....+...+. .++...|.+++.++...+.
T Consensus 302 ~d~IvG~PgEt~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~ 375 (438)
T TIGR01574 302 TDIIVGFPGETEEDFEETLDLLREVEFDSAFSFIYSPRPGTPAADMPDQIPEEIKKRRLQRLQARHNEILDKKM 375 (438)
T ss_pred eCEEEeCCCCCHHHHHHHHHHHHhcCCCeeeeEEecCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 9999999999999999999999998885 45443322332333 3466777777777665543
|
Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme. |
| >TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-22 Score=204.37 Aligned_cols=215 Identities=15% Similarity=0.267 Sum_probs=169.5
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCC-CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcc--cHHHHHHHHHHHHHh
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQ--GSGHFAQTVRKLKEL 205 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~-~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~--G~~~~~~lir~Ik~~ 205 (375)
...|+.+++||+.+|+||+++..++. ...++++++++++.+.+.|+++|+|++++-..+.+. +...+.++++.|++.
T Consensus 138 ~~~~i~isrGCp~~CsfC~~~~~~g~~r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~ 217 (414)
T TIGR01579 138 TRAFIKVQDGCNFFCSYCIIPFARGRSRSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQI 217 (414)
T ss_pred eEEEEEeccCcCCCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhcC
Confidence 56788899999999999999876543 358999999999999999999999999874433211 124688899988764
Q ss_pred CCC--cEEEeecCCCCCChHHHHHHHHcC--cccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017200 206 KPN--MLIEALVPDFRGNNGCVREVAKSG--LNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (375)
Q Consensus 206 ~p~--i~Ie~l~pd~~g~~e~l~~L~~aG--ldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~ 280 (375)
... +++..+.|+.. +++.++.|+++| ...+..++|+. +++++.|+ |+++.+++++.++.+++..+ |+.+.++
T Consensus 218 ~~~~~ir~~~~~p~~~-~~ell~~m~~~~~~~~~l~lglESgs~~vLk~m~-R~~~~~~~~~~v~~l~~~~~-gi~i~~~ 294 (414)
T TIGR01579 218 PGIKRIRLSSIDPEDI-DEELLEAIASEKRLCPHLHLSLQSGSDRVLKRMR-RKYTRDDFLKLVNKLRSVRP-DYAFGTD 294 (414)
T ss_pred CCCcEEEEeCCChhhC-CHHHHHHHHhcCccCCCeEECCCcCChHHHHhcC-CCCCHHHHHHHHHHHHHhCC-CCeeeee
Confidence 222 34444456533 788999999887 66788889975 59999999 89999999999999999665 5999999
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCC----ccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMP----VSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 281 imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~----v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
+|+|| |||+|++.++++++++++++.++++.|. .|++.... +...+..++.++|++++.++...+.
T Consensus 295 ~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~ 366 (414)
T TIGR01579 295 IIVGFPGESEEDFQETLRMVKEIEFSHLHIFPYSARPGTPASTMKDKVPETIKKERVKRLKELAEKNYQEFL 366 (414)
T ss_pred EEEECCCCCHHHHHHHHHHHHhCCCCEEEeeecCCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999998885 45443222 3333445678888888888777554
|
This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium. |
| >PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-22 Score=205.69 Aligned_cols=215 Identities=13% Similarity=0.247 Sum_probs=169.3
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCC-CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCC-cccHHHHHHHHHHHHHhC
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-DQGSGHFAQTVRKLKELK 206 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~-~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~-d~G~~~~~~lir~Ik~~~ 206 (375)
+..|+.+++||+.+|+||+++..+++ ...++++++++++.+.+.|+++|+|++.+-..+. |.+...+.++++.|.+..
T Consensus 146 ~~a~v~i~rGC~~~CsFC~~p~~~g~~rsr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~~~~~~Ll~~l~~~~ 225 (437)
T PRK14331 146 YCAYVTVMRGCDKKCTYCVVPKTRGKERSRRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGDVPFSELLYAVAEID 225 (437)
T ss_pred cEEEEEeccCcCCCCccCCcccCCCCcccCCHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCCCCHHHHHHHHhcCC
Confidence 67889999999999999999976644 3588999999999999999999999998754332 111134788888887643
Q ss_pred C--CcEEEeecCCCCCChHHHHHHHHc--Ccccccccccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE
Q 017200 207 P--NMLIEALVPDFRGNNGCVREVAKS--GLNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI 281 (375)
Q Consensus 207 p--~i~Ie~l~pd~~g~~e~l~~L~~a--Gldv~~hnlEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~i 281 (375)
+ .+++....|... +++.++.++++ |+..+..++|+ ++++++.|+ |+++.++++++++.+++..| |+.+.++|
T Consensus 226 g~~~i~~~~~~p~~l-~~ell~~~~~~~~~~~~l~igiqSgsd~vLk~m~-R~~t~~~~~~~v~~lr~~~~-gi~i~~d~ 302 (437)
T PRK14331 226 GVERIRFTTGHPRDL-DEDIIKAMADIPQVCEHLHLPFQAGSDRILKLMD-RGYTKEEYLEKIELLKEYIP-DITFSTDI 302 (437)
T ss_pred CccEEEEeccCcccC-CHHHHHHHHcCCccCCceecccccCChHHHHHcC-CCCCHHHHHHHHHHHHHhCC-CCEEecCE
Confidence 2 244444456433 78999999988 47888888996 569999999 89999999999999999776 59999999
Q ss_pred EEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCCcc----ccCCHHHHHHHHHHHHHhhhhhh
Q 017200 282 MLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVS----EYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 282 mvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~v~----~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
|+|| |||+|++.++++++++++++.++++.|. +|++....+. ..+..++...|.+++.++.+.+.
T Consensus 303 IvG~PgET~ed~~~tl~~l~~l~~~~i~~f~~sp~pGT~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~ 373 (437)
T PRK14331 303 IVGFPTETEEDFEETLDVLKKVEFEQVFSFKYSPRPGTPAAYMEGQEPDEVKTKRMNRLLELQKEITFKKA 373 (437)
T ss_pred EEECCCCCHHHHHHHHHHHHhcCcceeeeeEecCCCCcchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 9999999999999999999999998885 4544332222 23334567888888888777664
|
|
| >PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.6e-22 Score=206.91 Aligned_cols=214 Identities=19% Similarity=0.299 Sum_probs=166.0
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCC-c-ccHHHHHHHHHHHHHh
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-D-QGSGHFAQTVRKLKEL 205 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~~-~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~-d-~G~~~~~~lir~Ik~~ 205 (375)
+.+|+.+++||+++|+||+++..++.. +.++++|+++++.+.+.|+++|+|++.+-..+. | .+...|.++++.+.+.
T Consensus 157 ~~a~v~isrGCp~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~l~~i 236 (502)
T PRK14326 157 YAAWVSISVGCNNTCTFCIVPSLRGKEKDRRPGDILAEVQALVDEGVLEVTLLGQNVNAYGVSFGDRGAFSKLLRACGEI 236 (502)
T ss_pred ceEEEEEccCCCCCCccCceeccCCCcccCCHHHHHHHHHHHHHCCCceEEEEeecccccccCCCCHHHHHHHHHHHHhc
Confidence 567899999999999999999876543 589999999999999999999999999754331 1 1134688888888654
Q ss_pred CC--CcEEEeecCCCCCChHHHHHHHHcC--cccccccccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017200 206 KP--NMLIEALVPDFRGNNGCVREVAKSG--LNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (375)
Q Consensus 206 ~p--~i~Ie~l~pd~~g~~e~l~~L~~aG--ldv~~hnlEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~ 280 (375)
.+ .+++..+.|+.. +++.++.|+++| ...+..++|+ ++++++.|+ |+++.++++++++.+++..|. +.+.++
T Consensus 237 ~~l~~ir~~~~~p~~~-~~ell~~m~~~g~~~~~l~lglQSgsd~iLk~m~-R~~t~~~~~~~v~~lr~~~~~-i~i~~~ 313 (502)
T PRK14326 237 DGLERVRFTSPHPAEF-TDDVIEAMAETPNVCPQLHMPLQSGSDRVLRAMR-RSYRSERFLGILEKVRAAMPD-AAITTD 313 (502)
T ss_pred CCccEEEEeccChhhC-CHHHHHHHHhcCCcCCcEEeccCCCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCC-CeEEEE
Confidence 32 244444555433 789999999987 6677788996 569999999 899999999999999997664 889999
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCCcccc----CCHHHHHHHHHHHHHhhhhh
Q 017200 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEY----ITPEAFERYRALGMEMGFRY 345 (375)
Q Consensus 281 imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~v~~~----v~pe~~~~l~~~a~~~gf~~ 345 (375)
||+|| |||++|+.++++++++++++.+.++.|. +|++....+... +..+++++|.+++.++...+
T Consensus 314 ~IvGfPgET~edf~~Tl~~i~~~~~~~~~~f~~sp~pGT~~~~~~~~v~~~v~~~R~~~l~~~~~~~~~~~ 384 (502)
T PRK14326 314 IIVGFPGETEEDFQATLDVVREARFSSAFTFQYSKRPGTPAAEMEGQLPKAVVQERYERLVALQERISLEE 384 (502)
T ss_pred EEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCChHHhCcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999998888874 444332222222 33456777766666555443
|
|
| >PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.1e-22 Score=204.12 Aligned_cols=215 Identities=16% Similarity=0.253 Sum_probs=167.9
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCC-CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCC-cc-cHHHHHHHHHHHHHh
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-DQ-GSGHFAQTVRKLKEL 205 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~-~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~-d~-G~~~~~~lir~Ik~~ 205 (375)
+..|+.+++||+++|+||+++..+++ .+.++++++++++.+.+.|+++|+|+|++-.++. |. +...|.++++.|.+.
T Consensus 147 ~~~~i~i~rGC~~~CsfC~~p~~~g~~Rsr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~ 226 (439)
T PRK14328 147 VKAFVTIMYGCNNFCTYCIVPYVRGRERSRKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEEKIDFADLLRRVNEI 226 (439)
T ss_pred cEEEEEHHhCcCCCCCCCCcccccCCcccCCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCCCcCHHHHHHHHHhc
Confidence 67799999999999999999986654 3588999999999999999999999998754432 11 123478888888753
Q ss_pred CCCcEEE--eecCCCCCChHHHHHHHHcC--cccccccccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017200 206 KPNMLIE--ALVPDFRGNNGCVREVAKSG--LNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (375)
Q Consensus 206 ~p~i~Ie--~l~pd~~g~~e~l~~L~~aG--ldv~~hnlEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~ 280 (375)
....++. .+.|+.. +++.++.|+++| +..+..++|+ ++++++.|+ |+++.+++++.++.+++..|. +.+.++
T Consensus 227 ~~~~~ir~~~~~P~~i-~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~-R~~~~~~~~~~i~~lr~~~~~-i~i~~d 303 (439)
T PRK14328 227 DGLERIRFMTSHPKDL-SDDLIEAIADCDKVCEHIHLPVQSGSNRILKKMN-RHYTREYYLELVEKIKSNIPD-VAITTD 303 (439)
T ss_pred CCCcEEEEecCChhhc-CHHHHHHHHhCCCcCceeeeCCCcCCHHHHHhCC-CCCCHHHHHHHHHHHHHhCCC-CEEEEE
Confidence 2222444 4456543 788999999886 7778888896 569999999 899999999999999998765 889999
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCCccccC----CHHHHHHHHHHHHHhhhhhh
Q 017200 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYI----TPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 281 imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~v~~~v----~pe~~~~l~~~a~~~gf~~~ 346 (375)
+|+|| |||++|+.++++++++++++.++++.|. +|++....+.+.+ ..++++.|++++.++.+.+.
T Consensus 304 ~IvG~PgET~ed~~~tl~~i~~l~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~ 375 (439)
T PRK14328 304 IIVGFPGETEEDFEETLDLVKEVRYDSAFTFIYSKRKGTPAAKMEDQVPEDVKHERFNRLVELQNKISLEKN 375 (439)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCcccceEecCCCCChhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999998885 4543322222333 34567788888877666543
|
|
| >PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.2e-22 Score=203.02 Aligned_cols=215 Identities=14% Similarity=0.217 Sum_probs=166.5
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCC-CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCC-cc-cHHHHHHHHHHHHHh
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-DQ-GSGHFAQTVRKLKEL 205 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~-~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~-d~-G~~~~~~lir~Ik~~ 205 (375)
+..|+.+++||+.+|+||+++..+++ .+.++++++++++.+.+.|+++|+|++++-+.+. |. +...+.++++.+.+.
T Consensus 140 ~~~~v~i~rGC~~~CsFC~ip~~~G~~rsr~~e~Iv~Ei~~l~~~g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~~~~~ 219 (434)
T PRK14330 140 HHAWVTIIYGCNRFCTYCIVPYTRGREKSRPMEDILEEVEKLAKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEASKI 219 (434)
T ss_pred cEEEEEcccCCCCCCCCCceECcCCCCccCCHHHHHHHHHHHHHCCCcEEEEEEecccccccCCCCCccHHHHHHHHHhc
Confidence 67788999999999999999876654 3589999999999999999999999998754431 10 123578888877654
Q ss_pred CCC--cEEEeecCCCCCChHHHHHHHHcC--cccccccccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017200 206 KPN--MLIEALVPDFRGNNGCVREVAKSG--LNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (375)
Q Consensus 206 ~p~--i~Ie~l~pd~~g~~e~l~~L~~aG--ldv~~hnlEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~ 280 (375)
.+. +++....|+.. +++.++.++++| +..+..++|+ ++++++.|+ |+++.+++.+.++.+++..|. +.+.++
T Consensus 220 ~~~~~~~~~~~~p~~~-~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~-R~~~~~~~~~~i~~lr~~~~~-i~i~~d 296 (434)
T PRK14330 220 EGIERIWFLTSYPTDF-SDELIEVIANSPKVAKSIHLPVQSGSNRILKLMN-RRYTREEYLELIEKIRSKVPD-ASISSD 296 (434)
T ss_pred CCceEEEEecCChhhc-CHHHHHHHhcCCcccCceecCcCCCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCC-CEEEEE
Confidence 322 23333445432 688899999887 5667788996 569999999 899999999999999998765 889999
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCC-ccccCC----HHHHHHHHHHHHHhhhhhh
Q 017200 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMP-VSEYIT----PEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 281 imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~-v~~~v~----pe~~~~l~~~a~~~gf~~~ 346 (375)
||+|| |||++++.++++++++++++.++++.|. +|++.... +.+.+. .++..+|.+++.++.+.+.
T Consensus 297 ~IvGfPgET~edf~~tl~fi~~~~~~~~~~~~~sp~pGT~~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~ 369 (434)
T PRK14330 297 IIVGFPTETEEDFMETVDLVEKAQFERLNLAIYSPREGTVAWKYYKDDVPYEEKVRRMQYLLNLQKRINRKLN 369 (434)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCEEeeeeccCCCCChhhhhCccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999998885 45433222 223333 3567788888888776553
|
|
| >PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.9e-22 Score=202.17 Aligned_cols=214 Identities=14% Similarity=0.265 Sum_probs=165.6
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCC-CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCC-cc--------c---HHHH
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-DQ--------G---SGHF 195 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~-~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~-d~--------G---~~~~ 195 (375)
..+|+.+++||+.+|+||+++..++. .+.++++++++++.+.+.|+++|+|+|.|...+. |. | ..++
T Consensus 139 ~~a~v~isrGCp~~CsFC~ip~~~G~~rsr~~e~Vv~Ei~~l~~~g~kei~l~~~d~~~yg~d~~~~~~~~~~~~~~~~~ 218 (440)
T PRK14862 139 HYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDVLREAERLVKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPVKTRM 218 (440)
T ss_pred cEEEEEeccCCCCCCccCCcccccCCccccCHHHHHHHHHHHHHCCCceEEEEecChhhhccccccccccccccchhhHH
Confidence 66788999999999999999986653 3589999999999999999999999998732221 10 1 2578
Q ss_pred HHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcc--cccccccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Q 017200 196 AQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLN--VFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVP 272 (375)
Q Consensus 196 ~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld--v~~hnlEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p 272 (375)
.++++.|.+....+++..+.|... +++.++.+++ |.- .+..++|+ ++++++.|+ ++++++++++.++.+++..|
T Consensus 219 ~~Ll~~l~~~~~~~r~~~~~p~~~-~dell~~m~~-g~~~~~l~IglESgs~~vLk~m~-r~~~~~~~~~~i~~lr~~~~ 295 (440)
T PRK14862 219 TDLCEALGELGAWVRLHYVYPYPH-VDEVIPLMAE-GKILPYLDIPFQHASPRVLKRMK-RPASVEKTLERIKKWREICP 295 (440)
T ss_pred HHHHHHHHhcCCEEEEecCCCCcC-CHHHHHHHhc-CCCccccccccccCCHHHHHhcC-CCCCHHHHHHHHHHHHHHCC
Confidence 999999987622224444566433 5688888888 532 34556885 579999999 89999999999999999876
Q ss_pred CCceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCCccccCC----HHHHHHHHHHHHHhhhhhh
Q 017200 273 AGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYIT----PEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 273 ~Gl~tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~v~~~v~----pe~~~~l~~~a~~~gf~~~ 346 (375)
. +.+.+++|+|| |||++++.++++++++++++.++++.|. +|+++...+...|+ .+++++|.+++.++...+.
T Consensus 296 ~-i~i~t~~IvGfPgET~edf~~tl~fi~e~~~d~~~~f~ysP~pGT~a~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~ 374 (440)
T PRK14862 296 D-LTIRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKYSPVEGATANDLPDQVPEEVKEERWARFMEVQQQISAARL 374 (440)
T ss_pred C-ceecccEEEECCCCCHHHHHHHHHHHHHcCCCeeeeEeecCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 88999999999 9999999999999999999999998885 55444322333344 4567788888777777664
|
|
| >TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125 | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.8e-22 Score=200.72 Aligned_cols=214 Identities=16% Similarity=0.295 Sum_probs=166.4
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCC-CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCc--ccHHHHHHHHHHHHHh
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD--QGSGHFAQTVRKLKEL 205 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~-~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d--~G~~~~~~lir~Ik~~ 205 (375)
..+||.+++||+.+|+||.++..++. ...++++++++++.+.+.|+++|+|++.+...+.. .+..++.++++.|.+.
T Consensus 135 ~~~~i~~srGC~~~CsfC~~~~~~G~~r~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i~~~ 214 (430)
T TIGR01125 135 HYAYLKVAEGCNRRCAFCIIPSIRGKLRSRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEELGKV 214 (430)
T ss_pred eEEEEEEccCCCCCCCcCCeecccCCceecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHHHhc
Confidence 66789999999999999999876543 35889999999999999999999999986543321 0135688999998765
Q ss_pred CC--CcEEEeecCCCCCChHHHHHHHHcC--cccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017200 206 KP--NMLIEALVPDFRGNNGCVREVAKSG--LNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (375)
Q Consensus 206 ~p--~i~Ie~l~pd~~g~~e~l~~L~~aG--ldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~ 280 (375)
.. .+++..+.|+.. +++.++.++++| +..+..++|+. +++++.|+ ++++.+++++.++.+++..| |+.+.++
T Consensus 215 ~~i~~~r~~~~~p~~~-~~ell~~~~~~~~~~~~l~iglES~s~~vLk~m~-k~~~~~~~~~~i~~l~~~~~-~i~i~~~ 291 (430)
T TIGR01125 215 GGIYWIRMHYLYPDEL-TDDVIDLMAEGPKVLPYLDIPLQHASDRILKLMR-RPGSGEQQLDFIERLREKCP-DAVLRTT 291 (430)
T ss_pred CCccEEEEccCCcccC-CHHHHHHHhhCCcccCceEeCCCCCCHHHHhhCC-CCCCHHHHHHHHHHHHHhCC-CCeEeEE
Confidence 21 223344556544 789999999985 66677789965 69999999 89999999999999999765 4889999
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCCccccCCH----HHHHHHHHHHHHhhhhh
Q 017200 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYITP----EAFERYRALGMEMGFRY 345 (375)
Q Consensus 281 imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~v~~~v~p----e~~~~l~~~a~~~gf~~ 345 (375)
+|+|| |||+|++.++++++++++++.++++.|. +|++....+...+.+ ++..+|.+++.++...+
T Consensus 292 ~I~G~PgET~e~~~~t~~fl~~~~~~~~~~~~~sp~pGT~~~~~~~~i~~~~~~~r~~~l~~~~~~~~~~~ 362 (430)
T TIGR01125 292 FIVGFPGETEEDFQELLDFVEEGQFDRLGAFTYSPEEGTDAFALPDQVPEEVKEERLERLMQLQQRISAKK 362 (430)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCEEeeeeccCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999998885 454443333333443 45667777766655544
|
This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes. |
| >PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=201.41 Aligned_cols=212 Identities=16% Similarity=0.282 Sum_probs=164.7
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCC-CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCC-c-ccHHHHHHHHHHHHHh
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-D-QGSGHFAQTVRKLKEL 205 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~-~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~-d-~G~~~~~~lir~Ik~~ 205 (375)
...|+.+++||+.+|+||.++..+++ ..+++++++++++.+.+.|+++|+|+|.+-..+. | .+..++.++++.|++.
T Consensus 155 ~~~~i~I~rGC~~~CsfC~~p~~~G~~rsr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~ 234 (459)
T PRK14338 155 VTVHVPIIYGCNMSCSYCVIPLRRGRERSRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEI 234 (459)
T ss_pred eEEEEEcccCCCCCCCcCCeeccCCCCccCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhc
Confidence 67889999999999999999976543 3589999999999999999999999998643321 1 0134689999999874
Q ss_pred CCCc-EEE--eecCCCCCChHHHHHHHHc--Ccccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEE
Q 017200 206 KPNM-LIE--ALVPDFRGNNGCVREVAKS--GLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKT 279 (375)
Q Consensus 206 ~p~i-~Ie--~l~pd~~g~~e~l~~L~~a--Gldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt 279 (375)
+++ .|. ...|+.. +++.++.|++. |+..+..++|+. +++++.|+ |+++.+++++.++.+++..|. +.+.+
T Consensus 235 -~gi~~ir~~~~~p~~i-~~ell~~l~~~~~~~~~v~lglQSgsd~vLk~m~-R~~t~e~~~~~i~~lr~~~pg-i~i~~ 310 (459)
T PRK14338 235 -PGLERLRFLTSHPAWM-TDRLIHAVARLPKCCPHINLPVQAGDDEVLKRMR-RGYTVARYRELIARIREAIPD-VSLTT 310 (459)
T ss_pred -CCcceEEEEecChhhc-CHHHHHHHhcccccccceecCcccCCHHHHHhcc-CCCCHHHHHHHHHHHHHhCCC-CEEEE
Confidence 333 344 4456544 67889999885 467778889965 69999999 899999999999999997764 89999
Q ss_pred eEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCCcccc----CCH----HHHHHHHHHHHHhhhh
Q 017200 280 SIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEY----ITP----EAFERYRALGMEMGFR 344 (375)
Q Consensus 280 ~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~v~~~----v~p----e~~~~l~~~a~~~gf~ 344 (375)
++|+|| |||++|+.++++++++++++.++++.|. +|.+....+... +.+ ++.+.|++++.++...
T Consensus 311 d~IvG~PgET~ed~~~ti~~l~~l~~~~v~i~~ysp~pGT~~~~~~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~ 385 (459)
T PRK14338 311 DIIVGHPGETEEQFQRTYDLLEEIRFDKVHIAAYSPRPGTLAAEMEDDPALAVPPEEKQRRRRALEQLQEQIATE 385 (459)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHcCCCEeEEEecCCCCCChhhhCcCCccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 9999999999999999999999998886 453322212222 433 3556677777765543
|
|
| >TIGR00089 RNA modification enzyme, MiaB family | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.6e-22 Score=201.34 Aligned_cols=215 Identities=19% Similarity=0.324 Sum_probs=168.8
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCC-CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCC-Ccc-cHHHHHHHHHHHHHh
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDL-ADQ-GSGHFAQTVRKLKEL 205 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~-~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl-~d~-G~~~~~~lir~Ik~~ 205 (375)
+.+|+.+++||+.+|+||+++..++. ...++++++++++.+.+.|+++|+|++.+-..+ .|. +..++.++++.|++.
T Consensus 139 ~~~~i~~srGC~~~CsfC~~~~~~g~~r~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~ 218 (429)
T TIGR00089 139 TRAFLKIQEGCDKFCTYCIVPYARGRERSRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLKGETNLADLLRELSKI 218 (429)
T ss_pred eEEEEEHHhCcCCCCCcCceecccCCCCCCCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCCCCcCHHHHHHHHhcC
Confidence 67888899999999999999876543 358999999999999999999999999874333 121 124588999999764
Q ss_pred CCC--cEEEeecCCCCCChHHHHHHHHcC--cccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017200 206 KPN--MLIEALVPDFRGNNGCVREVAKSG--LNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (375)
Q Consensus 206 ~p~--i~Ie~l~pd~~g~~e~l~~L~~aG--ldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~ 280 (375)
... +++..+.|+.. +++.++.++++| ...+..++|+. +++++.|+ |+++.++++++++.+++..|. +.+.++
T Consensus 219 ~g~~~i~~~~~~p~~i-~~ell~~m~~~~~~~~~l~igiES~s~~vLk~m~-R~~~~~~~~~~i~~lr~~~~~-i~i~~~ 295 (429)
T TIGR00089 219 DGIERIRFGSSHPDDV-TDDLIELIAENPKVCKHLHLPVQSGSDRILKRMN-RKYTREEYLDIVEKIRAKIPD-AAITTD 295 (429)
T ss_pred CCCCEEEECCCChhhc-CHHHHHHHHhCCCccCceeeccccCChHHHHhCC-CCCCHHHHHHHHHHHHHHCCC-CEEEee
Confidence 222 33434456433 789999999985 77788889975 59999999 899999999999999997654 889999
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCC----ccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMP----VSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 281 imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~----v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
+|+|| |||+|++.++++++++++++.++++.|. .|++.... +...+..++...|++++.+++..+.
T Consensus 296 ~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pgT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~ 367 (429)
T TIGR00089 296 IIVGFPGETEEDFEETLDLVEEVKFDKLHSFIYSPRPGTPAADMKDQVPEEVKKERLERLIALQKEISLEKN 367 (429)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCEeeccccCCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999998885 34332222 2233344577888888888776654
|
This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related. |
| >PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=200.64 Aligned_cols=214 Identities=15% Similarity=0.247 Sum_probs=167.3
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCC-CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCc----ccHHHHHHHHHHHH
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD----QGSGHFAQTVRKLK 203 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~-~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d----~G~~~~~~lir~Ik 203 (375)
+..|+.+++||+.+|+||+++..++. ...++++++++++.+.+.|+++|+|++.+-..+.+ +...++.++++.|.
T Consensus 147 ~~~~i~isrGCp~~CsFC~~p~~~G~~~sr~~e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~~~~~~~~~~l~~Ll~~l~ 226 (444)
T PRK14325 147 PSAFVSIMEGCDKYCTFCVVPYTRGEEVSRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGPDGEIADFAELLRLVA 226 (444)
T ss_pred ceEEEEhhhCCCCCCCccccCcccCCcccCCHHHHHHHHHHHHHCCCcEEEEEeeccccccCCCCCCCcchHHHHHHHHH
Confidence 67788889999999999999876543 35899999999999999999999999987433311 11346889999887
Q ss_pred HhCC--CcEEEeecCCCCCChHHHHHHHHcC--cccccccccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEE
Q 017200 204 ELKP--NMLIEALVPDFRGNNGCVREVAKSG--LNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTK 278 (375)
Q Consensus 204 ~~~p--~i~Ie~l~pd~~g~~e~l~~L~~aG--ldv~~hnlEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tk 278 (375)
+..+ .+++....|+.. +++.++.++++| +..+..++|+ ++++++.|+ |+++.++++++++.+++..| |+.+.
T Consensus 227 ~~~~~~~ir~~~~~p~~~-~~ell~~l~~~~~~~~~l~igiqSgs~~vLk~m~-R~~~~~~~~~~i~~lr~~~~-gi~v~ 303 (444)
T PRK14325 227 AIDGIERIRYTTSHPRDF-TDDLIEAYADLPKLVPFLHLPVQSGSDRILKAMN-RGHTALEYKSIIRKLRAARP-DIAIS 303 (444)
T ss_pred hcCCccEEEEccCCcccC-CHHHHHHHHcCCcccCceeccCCcCCHHHHHhCC-CCCCHHHHHHHHHHHHHHCC-CCEEE
Confidence 6422 244444556543 788999999875 7778888996 569999999 89999999999999999765 48999
Q ss_pred EeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCCc----cccCCHHHHHHHHHHHHHhhhhh
Q 017200 279 TSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPV----SEYITPEAFERYRALGMEMGFRY 345 (375)
Q Consensus 279 t~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~v----~~~v~pe~~~~l~~~a~~~gf~~ 345 (375)
+++|+|| |||++++.++++++++++++.++++.|. .|++....+ ...+..++.+.|++++.++...+
T Consensus 304 ~~~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~ 376 (444)
T PRK14325 304 SDFIVGFPGETDEDFEATMKLIEDVGFDQSFSFIYSPRPGTPAADLPDDVPEEVKKERLQRLQALINQQQMAF 376 (444)
T ss_pred eeEEEECCCCCHHHHHHHHHHHHhcCCCeeeeeeccCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 9999999999999999999999988885 454332222 22334457778888777655544
|
|
| >PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.3e-22 Score=202.79 Aligned_cols=214 Identities=16% Similarity=0.267 Sum_probs=167.0
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCC-c--cc------HHHHHHH
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-D--QG------SGHFAQT 198 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~~-~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~-d--~G------~~~~~~l 198 (375)
...|+.+++||+.+|+||+++..++.. +.++++++++++.+.+.|+++|+|+|.+-.++. | ++ ...|.++
T Consensus 148 ~~a~i~i~~GC~~~CsFC~ip~~rG~~rsr~~e~V~~Ei~~l~~~g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~l~~L 227 (448)
T PRK14333 148 ITAWVNVIYGCNERCTYCVVPSVRGKEQSRTPEAIRAEIEELAAQGYKEITLLGQNIDAYGRDLPGTTPEGRHQHTLTDL 227 (448)
T ss_pred eeEEEEhhcCCCCCCCCCceecccCCCcccCHHHHHHHHHHHHHCCCcEEEEEecccchhcCCCCCccccccccccHHHH
Confidence 567889999999999999999766543 588999999999999999999999998644331 1 11 1368999
Q ss_pred HHHHHHhCCCcEEEe--ecCCCCCChHHHHHHHHc--Ccccccccccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Q 017200 199 VRKLKELKPNMLIEA--LVPDFRGNNGCVREVAKS--GLNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPA 273 (375)
Q Consensus 199 ir~Ik~~~p~i~Ie~--l~pd~~g~~e~l~~L~~a--Gldv~~hnlEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~ 273 (375)
++.|.+.....+|.. +.|+.. +++.++.++++ |+..+..++|+ ++++++.|+ |+++.+++++.++.+++..|.
T Consensus 228 l~~i~~~~~~~rir~~~~~p~~~-~~eli~~~~~~~~~~~~l~igiQSgsd~vLk~m~-R~~t~e~~~~~i~~lr~~~p~ 305 (448)
T PRK14333 228 LYYIHDVEGIERIRFATSHPRYF-TERLIKACAELPKVCEHFHIPFQSGDNEILKAMA-RGYTHEKYRRIIDKIREYMPD 305 (448)
T ss_pred HHHHHhcCCCeEEEECCCChhhh-hHHHHHHHhcCCcccccccCCCccCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCC
Confidence 999876432223443 446543 67888888876 46667777896 569999999 899999999999999998775
Q ss_pred CceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCC----ccccCCHHHHHHHHHHHHHhhhhh
Q 017200 274 GTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMP----VSEYITPEAFERYRALGMEMGFRY 345 (375)
Q Consensus 274 Gl~tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~----v~~~v~pe~~~~l~~~a~~~gf~~ 345 (375)
+.+.++||+|| |||+|++.++++++++++++.++++.|. +|++.... +...+..++.+.|++++.+....+
T Consensus 306 -i~i~~d~IvGfPgET~edf~~tl~~l~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~ 382 (448)
T PRK14333 306 -ASISADAIVGFPGETEAQFENTLKLVEEIGFDQLNTAAYSPRPGTPAALWDNQLSEEVKSDRLQRLNHLVEQKAAER 382 (448)
T ss_pred -cEEEeeEEEECCCCCHHHHHHHHHHHHHcCCCEEeeeeeecCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999 9999999999999999999999998885 56443322 333345567788888887766544
|
|
| >TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-21 Score=196.32 Aligned_cols=215 Identities=16% Similarity=0.253 Sum_probs=163.9
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCC-CcccHHHHHHHHHHHHHhC
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDL-ADQGSGHFAQTVRKLKELK 206 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~~-~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl-~d~G~~~~~~lir~Ik~~~ 206 (375)
+.+|+.+++||+++|+||+++..+++. ..++++++++++.+.+.|+++|+|+|+|...+ .|.+ .++.++++.|.+..
T Consensus 133 ~~~~i~isrGC~~~CsfC~ip~~~G~~rsr~~e~Vl~Ei~~l~~~G~~ei~l~g~d~~~yg~d~~-~~l~~Ll~~l~~i~ 211 (420)
T TIGR01578 133 LIEIIPINQGCLGNCSYCITKHARGKLASYPPEKIVEKARQLVAEGCKEIWITSQDTGAYGRDIG-SRLPELLRLITEIP 211 (420)
T ss_pred cEEEEEEccCCCCCCCCCccccCCCCcccCCHHHHHHHHHHHHHCCCeEEEEEeeccccccCCCC-cCHHHHHHHHHhCC
Confidence 678999999999999999999876543 58999999999999999999999999875544 2222 24777777776542
Q ss_pred C--CcEEEeecCCCC--CChHHHHHHHHcC-cccccccccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017200 207 P--NMLIEALVPDFR--GNNGCVREVAKSG-LNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (375)
Q Consensus 207 p--~i~Ie~l~pd~~--g~~e~l~~L~~aG-ldv~~hnlEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~ 280 (375)
. .+++..+.|... -+++.++.+...+ ...+..++|+ ++++++.|+ |+++.+++++.++.+++..| |+.+.++
T Consensus 212 ~~~~ir~~~~~p~~~~~~~~~l~~~~~~~~~~~~l~iglQSgsd~iL~~m~-R~~~~~~~~~~i~~i~~~~~-~i~i~~~ 289 (420)
T TIGR01578 212 GEFRLRVGMMNPKNVLEILDELANVYQHEKVYKFLHLPVQSGSDSVLKEMK-REYTVSDFEDIVDKFRERFP-DLTLSTD 289 (420)
T ss_pred CCcEEEEcCCCCCcccccCHHHHHHHhcccccCceEeCCccCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCC-CCEEEee
Confidence 2 244544556321 1456666665444 3556667886 469999999 89999999999999999776 4899999
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCCc---cccCCHHHHHHHHHHHHHhhhhhh
Q 017200 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPV---SEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 281 imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~v---~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
||+|| |||++++.++++++++++++.++++.|. .|++....+ ...+..++.+.|++++.++...+.
T Consensus 290 ~IvG~PgET~ed~~~t~~~~~~~~~~~i~~~~~~p~pGT~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~~ 360 (420)
T TIGR01578 290 IIVGFPTETDDDFEETMELLRKYRPEKINITKFSPRPGTPAAKMKRIPTNIVKKRSKRLTKLYEQVLLEMR 360 (420)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhCCCEEEEEEeeCCCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999998885 454432222 222344578888888888766553
|
This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model. |
| >PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-21 Score=198.33 Aligned_cols=215 Identities=18% Similarity=0.287 Sum_probs=166.8
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCC-cc-cHHHHHHHHHHHHHh
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-DQ-GSGHFAQTVRKLKEL 205 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~~-~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~-d~-G~~~~~~lir~Ik~~ 205 (375)
...|+.+++||+.+|+||.++..+++. ..++++++++++.+.+.|+++|+|+|.+-..+. |. +...+.++++.|.+.
T Consensus 138 ~~~~l~isrGC~~~CsfC~~p~~~g~~~sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~~l~~~ 217 (440)
T PRK14334 138 LSAHLTIMRGCNHHCTYCIVPTTRGPEVSRHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLRLVGAS 217 (440)
T ss_pred eEEEEEeccCCCCCCcCCCcchhcCCCccCCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHHHHHhc
Confidence 788999999999999999999765443 588999999999999999999999997633221 10 122477888888654
Q ss_pred C-CCcEEEeecCCCCCChHHHHHHHHc--Ccccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE
Q 017200 206 K-PNMLIEALVPDFRGNNGCVREVAKS--GLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI 281 (375)
Q Consensus 206 ~-p~i~Ie~l~pd~~g~~e~l~~L~~a--Gldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~i 281 (375)
. +.+++..+.|+.. +++.++.|+++ |+..+..++|+. +++++.|+ |+++.+++++.++.+++..|. +.+.+++
T Consensus 218 ~i~~ir~~~~~p~~i-~~ell~~l~~~~~g~~~l~igvQSgs~~vLk~m~-R~~~~~~~~~~v~~lr~~~~~-i~i~~d~ 294 (440)
T PRK14334 218 GIPRVKFTTSHPMNF-TDDVIAAMAETPAVCEYIHLPVQSGSDRVLRRMA-REYRREKYLERIAEIREALPD-VVLSTDI 294 (440)
T ss_pred CCcEEEEccCCcccC-CHHHHHHHHhcCcCCCeEEeccccCCHHHHHHhC-CCCCHHHHHHHHHHHHHhCCC-cEEEEeE
Confidence 2 2344444556543 78899999985 478888899965 69999999 899999999999999998665 7789999
Q ss_pred EEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCCccccCC----HHHHHHHHHHHHHhhhhhh
Q 017200 282 MLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYIT----PEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 282 mvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~v~~~v~----pe~~~~l~~~a~~~gf~~~ 346 (375)
|+|| |||++++.++++++++++++.++++.|. +|++........+. .++.++|.+++.++...+.
T Consensus 295 IvG~PgEt~ed~~~tl~~i~~l~~~~i~~f~ysp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~ 365 (440)
T PRK14334 295 IVGFPGETEEDFQETLSLYDEVGYDSAYMFIYSPRPGTPSYKHFQDLPREVKTERLQRLIEKQKEWSYRRN 365 (440)
T ss_pred EEECCCCCHHHHHHHHHHHHhcCCCEeeeeEeeCCCCChhHhccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 9999999999999999999999999885 45433222222333 4567788888777666554
|
|
| >PRK06267 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-20 Score=186.96 Aligned_cols=219 Identities=16% Similarity=0.168 Sum_probs=154.8
Q ss_pred cChhhhhhhcCCCCcccccCCCCCCccEEEEeeeCCccC--CCCcCCCCCCCCCC------CCCCcchHHHHHHHHHhcC
Q 017200 102 LKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCT--RGCRFCNVKTSRAP------PPPDPDEPTNVAEAIASWG 173 (375)
Q Consensus 102 ~~L~tvceeA~cpn~~ec~~~~~~~~~tatfm~i~d~C~--~~C~FC~v~~~r~~------~~ld~eEi~~~a~al~~~G 173 (375)
.+|..+++.|+-.+.. .||+. -...+.+..+++|+ ++|+||+++..+++ ..+++||+++.++.+.+.|
T Consensus 4 ~~~~~L~~~A~~ir~~-~fG~~---v~l~~~l~~S~~C~l~~~C~FC~~s~~~~~i~~~~~~~~s~eeI~eea~~~~~~G 79 (350)
T PRK06267 4 EEILENSIKAFKLTEK-HHGNI---VSLERALFLGWYCNLKGPCKFCYMSTQKDKIKDPLKARRRVESILAEAILMKRIG 79 (350)
T ss_pred hHHHHHHHHHHHHHHH-HcCCe---EEEEEeeeecCCCcCCCCCcCCCCcccCCccCccccccCCHHHHHHHHHHHHHcC
Confidence 3566667777666554 34432 11222355799999 99999999874321 1379999999999999999
Q ss_pred CcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcC
Q 017200 174 LDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRD 252 (375)
Q Consensus 174 ~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~ 252 (375)
++.++|+||.. +. ...+.++++.|++.. ...+.+..+-. +.+.+..+..+|+ .+++||. +++++.|+
T Consensus 80 v~~~~lsgG~~--~~---~~el~~i~e~I~~~~-~~~~~~s~G~~--d~~~~~~~~l~Gv---~g~~ET~~~~~~~~i~- 147 (350)
T PRK06267 80 WKLEFISGGYG--YT---TEEINDIAEMIAYIQ-GCKQYLNVGII--DFLNINLNEIEGV---VGAVETVNPKLHREIC- 147 (350)
T ss_pred CCEEEEecCCC--CC---HHHHHHHHHHHHHhh-CCceEeecccC--CHHHHhhccccCc---eeeeecCCHHHHHhhC-
Confidence 99999999965 22 234555555555432 22222222211 4455555555564 5789998 59999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHH
Q 017200 253 HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFE 332 (375)
Q Consensus 253 r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~ 332 (375)
+++++++++++++.+++ .|+.+++++|+|+|||.+|+.++++.+++++++.++|..+ .|. +++|......++..+
T Consensus 148 ~~~s~ed~~~~l~~ak~---aGi~v~~g~IiGlgEt~ed~~~~l~~l~~l~~d~v~~~~L-~P~-pGTp~~~~~~~s~~e 222 (350)
T PRK06267 148 PGKPLDKIKEMLLKAKD---LGLKTGITIILGLGETEDDIEKLLNLIEELDLDRITFYSL-NPQ-KGTIFENKPSVTTLE 222 (350)
T ss_pred CCCCHHHHHHHHHHHHH---cCCeeeeeEEEeCCCCHHHHHHHHHHHHHcCCCEEEEEee-eEC-CCCcCCCCCCCCHHH
Confidence 48899999999999999 6899999999999999999999999999999999888544 463 345554443445566
Q ss_pred HHHHHHHHh
Q 017200 333 RYRALGMEM 341 (375)
Q Consensus 333 ~l~~~a~~~ 341 (375)
.++.+|..+
T Consensus 223 ~lr~ia~~R 231 (350)
T PRK06267 223 YMNWVSSVR 231 (350)
T ss_pred HHHHHHHHH
Confidence 666666553
|
|
| >KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-19 Score=169.96 Aligned_cols=223 Identities=17% Similarity=0.296 Sum_probs=164.9
Q ss_pred ccCCCCCCccEEEEee-eCCccCCCCcCCCCCCCCC-C----CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccH
Q 017200 119 CWSGGETGTATATIMI-LGDTCTRGCRFCNVKTSRA-P----PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGS 192 (375)
Q Consensus 119 c~~~~~~~~~tatfm~-i~d~C~~~C~FC~v~~~r~-~----~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~ 192 (375)
.|++. ..-...|.|. -+.||+.+|+||+++.... . .-+..||+++.|+.+++.|-...++-+..||-... .
T Consensus 74 k~Hdp-~kVQqCTLlsIKtGGCsEDCkYCaQSSRy~TGvKA~klmk~DeVi~~Ak~AK~~GSTRFCmGaAWRD~~GR--k 150 (380)
T KOG2900|consen 74 KWHDP-TKVQQCTLLSIKTGGCSEDCKYCAQSSRYDTGVKAEKLMKVDEVIKEAKEAKRNGSTRFCMGAAWRDMKGR--K 150 (380)
T ss_pred hhCCc-cceeeeEEEEeecCCcccccchhhhhcccccchhHHHHhhHHHHHHHHHHHHhcCCceeecchhhhhhccc--h
Confidence 46643 2223567764 4889999999999985321 1 12789999999999999999999988877754322 2
Q ss_pred HHHHHHHHHHHHhC-CCcEEEeecCCCCCChHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhC
Q 017200 193 GHFAQTVRKLKELK-PNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYV 271 (375)
Q Consensus 193 ~~~~~lir~Ik~~~-p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~ 271 (375)
..|-.+++.|++.. =++.+++-.+-. +.++..+|+++|+..|+||++|+.+.|++|- -.-+|+++|++|+.+++
T Consensus 151 ~~fk~IlE~ikevr~MgmEvCvTLGMv--~~qQAkeLKdAGLTAYNHNlDTSREyYskvI-tTRtYDdRL~Ti~nvr~-- 225 (380)
T KOG2900|consen 151 SAFKRILEMIKEVRDMGMEVCVTLGMV--DQQQAKELKDAGLTAYNHNLDTSREYYSKVI-TTRTYDDRLQTIKNVRE-- 225 (380)
T ss_pred hHHHHHHHHHHHHHcCCceeeeeeccc--cHHHHHHHHhccceecccCccchhhhhcccc-eecchHHHHHHHHHHHH--
Confidence 33555555555443 246666666655 7889999999999999999999999999988 47799999999999999
Q ss_pred CCCceEEEeEEEecCCCHHHHHHHHHHHHHcCC--cEEeeecCCCCCCCCCCccccCC--HHHHHHHHHHHHHhhhhhhc
Q 017200 272 PAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGV--DVMTFGQYMRPSKRHMPVSEYIT--PEAFERYRALGMEMGFRYVA 347 (375)
Q Consensus 272 p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgv--d~v~i~qYl~P~~~~~~v~~~v~--pe~~~~l~~~a~~~gf~~~~ 347 (375)
.|+.++++.|+||||.++|.+-.+..|..+.. +.||| +-+-|. +++|+.+.+. -+--+.|+.+|.. +.|+
T Consensus 226 -aGikvCsGGIlGLGE~e~DriGlihtLatmp~HPESvPi-N~Lvai-kGTP~~d~~~k~l~i~e~lR~IaTA---RIvM 299 (380)
T KOG2900|consen 226 -AGIKVCSGGILGLGESEDDRIGLIHTLATMPPHPESVPI-NRLVAI-KGTPMADEKSKKLQIDEILRTIATA---RIVM 299 (380)
T ss_pred -hcceecccccccccccccceeeeeeeeccCCCCCccccc-ceEEec-CCcccchhhcccccHHHHHHHHhhh---heec
Confidence 68999999999999999999998888887763 56777 444452 4677765322 1234556666655 5667
Q ss_pred cchhhhhh
Q 017200 348 SGPMVRSS 355 (375)
Q Consensus 348 sgp~vrss 355 (375)
.-.++|-+
T Consensus 300 PKaiiRla 307 (380)
T KOG2900|consen 300 PKAIIRLA 307 (380)
T ss_pred hHHHHHHh
Confidence 66677654
|
|
| >KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.9e-18 Score=167.41 Aligned_cols=208 Identities=18% Similarity=0.280 Sum_probs=163.5
Q ss_pred ccEEEEeeeCCccCCCCcCCCCCCCCCC-CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCc----------------
Q 017200 127 TATATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD---------------- 189 (375)
Q Consensus 127 ~~tatfm~i~d~C~~~C~FC~v~~~r~~-~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d---------------- 189 (375)
.++.+|+.+-.||++-|+||.|+..|+. .+.+.+.|+++++.+.+.|+++|.|.|++-..+.|
T Consensus 218 ~s~tAFvSiMRGCdNMCtyCiVpftrGreRsrpi~siv~ev~~L~~qG~KeVTLLGQNVNSyrD~s~~~~~~a~~~~~~~ 297 (552)
T KOG2492|consen 218 SSTTAFVSIMRGCDNMCTYCIVPFTRGRERSRPIESIVEEVKRLAEQGVKEVTLLGQNVNSYRDNSAVQFSSAVPTNLSP 297 (552)
T ss_pred ccchhHHHHHhccccccceEEEeccCCcccCCchHHHHHHHHHHhhcCceeeeeecccccccccchhhhhccCCccccCC
Confidence 4467777778999999999999987654 35889999999999999999999999996322221
Q ss_pred ---------ccHHHHHHHHHHHHHhCCCcEEEeecC---CCCCChHHHHHHHHcC-ccccccc-cc-chHHHHHHhcCCC
Q 017200 190 ---------QGSGHFAQTVRKLKELKPNMLIEALVP---DFRGNNGCVREVAKSG-LNVFAHN-IE-TVEELQSAVRDHR 254 (375)
Q Consensus 190 ---------~G~~~~~~lir~Ik~~~p~i~Ie~l~p---d~~g~~e~l~~L~~aG-ldv~~hn-lE-tv~rl~~~mr~r~ 254 (375)
.|--.|+.+++.+....|+++|..-.| || .+|.|+.+.+-. .+..-|. .. ...++++.|+ |+
T Consensus 298 GFst~yK~K~gGl~Fa~LLd~vs~~~PemR~RFTSPHPKDf--pdevl~li~~rdnickqihlPAqSgds~vLE~mr-Rg 374 (552)
T KOG2492|consen 298 GFSTVYKPKQGGLRFAHLLDQVSRADPEMRIRFTSPHPKDF--PDEVLELIRDRDNICKQIHLPAQSGDSRVLEIMR-RG 374 (552)
T ss_pred CceeeecccCCCccHHHHHHHHhhhCcceEEEecCCCCCCC--hHHHHHHHHhCcchhheeeccccCCchHHHHHHH-cc
Confidence 122469999999999999999998877 56 567777776642 1222333 33 3459999999 99
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecC-CCCCC-CC----CCccccCC
Q 017200 255 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQY-MRPSK-RH----MPVSEYIT 327 (375)
Q Consensus 255 ~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qY-l~P~~-~~----~~v~~~v~ 327 (375)
++.+.+++...+++...|. +-.++++|.|| |||+||..+++-.|+++|.+++.+|.| ||..+ -| -.+.+.|+
T Consensus 375 ysreayl~lv~~Irs~iPg-VglssdfitgfCgeTeedhq~t~sLlrqVgYdv~~lFaysmR~kT~ay~r~~ddvpeeVK 453 (552)
T KOG2492|consen 375 YSREAYLELVAHIRSMIPG-VGLSSDFITGFCGETEEDHQYTVSLLRQVGYDVVFLFAYSMREKTRAYHRLKDDVPEEVK 453 (552)
T ss_pred CChHhhhhHHHHHHhhCCC-CcceeeeEecccCCChHHHHHHHHHHHHhccCeeeeEEeeecccchhhhhhcccccHHHH
Confidence 9999999999999999986 88999999999 999999999999999999999999999 45522 22 23455566
Q ss_pred HHHHHHHHHHH
Q 017200 328 PEAFERYRALG 338 (375)
Q Consensus 328 pe~~~~l~~~a 338 (375)
.++..+|..+=
T Consensus 454 nrrl~~Li~~F 464 (552)
T KOG2492|consen 454 NRRLFELITFF 464 (552)
T ss_pred HHHHHHHHHHH
Confidence 66666665543
|
|
| >smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.8e-17 Score=145.05 Aligned_cols=176 Identities=17% Similarity=0.297 Sum_probs=140.9
Q ss_pred EEeeeCCccCCCCcCCCCCCCCC-CCCCCcchHHHHHHHHHhcC-----CcEEEEEeeeCCCCCcccHHHHHHHHHHHHH
Q 017200 131 TIMILGDTCTRGCRFCNVKTSRA-PPPPDPDEPTNVAEAIASWG-----LDYVVITSVDRDDLADQGSGHFAQTVRKLKE 204 (375)
Q Consensus 131 tfm~i~d~C~~~C~FC~v~~~r~-~~~ld~eEi~~~a~al~~~G-----~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~ 204 (375)
.++.++++|+.+|.||..+...+ ...++++++.+.++.+.+.| ++.+.++||+....+ ..++.++++.+++
T Consensus 3 ~~i~~t~~C~~~C~yC~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~~~~~~---~~~~~~~~~~~~~ 79 (216)
T smart00729 3 ALYIITRGCPRRCTFCSFPSARGKLRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLS---PEQLEELLEAIRE 79 (216)
T ss_pred cEEEecCchhccCCcCCcCccccchhHHHHHHHHHHHHHHHhcccCCcceeEEEECCCCCCCCC---HHHHHHHHHHHHH
Confidence 45678999999999999987432 22378899999999887665 477888888765444 2357788888887
Q ss_pred hCC---CcEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-ceEEE
Q 017200 205 LKP---NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAG-TLTKT 279 (375)
Q Consensus 205 ~~p---~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~G-l~tkt 279 (375)
..+ ...+.+.+-....+.+.++.|+++|++.+.+++|+. +++++.++ ++.+++++++.++.+++ .| +.+++
T Consensus 80 ~~~~~~~~~~~~~tn~~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~---~g~~~v~~ 155 (216)
T smart00729 80 ILGLADDVEITIETRPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAIN-RGHTVEDVLEAVEKLRE---AGPIKVST 155 (216)
T ss_pred hCCCCCCeEEEEEeCcccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhc-CCCCHHHHHHHHHHHHH---hCCcceEE
Confidence 654 344444432122278999999999999999999975 58898898 68999999999999999 46 78999
Q ss_pred eEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 280 SIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 280 ~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
++|+|+ +++++++.+.++++++.+++.+.+.+|.
T Consensus 156 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 190 (216)
T smart00729 156 DLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLS 190 (216)
T ss_pred eEEecCCCCCHHHHHHHHHHHHHcCCCeEEeeeee
Confidence 999999 6999999999999999999999987775
|
This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases. |
| >PRK01254 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.7e-16 Score=162.05 Aligned_cols=179 Identities=13% Similarity=0.161 Sum_probs=137.4
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCC--CCCCcchHHHHHHHHHhc--CCcEEE--EEeeeCCCCC----c---------
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAP--PPPDPDEPTNVAEAIASW--GLDYVV--ITSVDRDDLA----D--------- 189 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~--~~ld~eEi~~~a~al~~~--G~~eIv--LTsgdr~dl~----d--------- 189 (375)
..+++.+..||..+|+||+++..++. .+.++++|+++++.+.+. |+++++ |+|.+-..+. |
T Consensus 372 i~~sV~i~RGC~g~CSFCaI~~hqGr~irSRS~esIL~Ea~~L~~~~pGfKgii~DLgGptaN~YG~~c~d~~~~~~C~~ 451 (707)
T PRK01254 372 IRFSVNIMRGCFGGCSFCSITEHEGRIIQSRSEESIINEIEAIRDKVPGFTGVISDLGGPTANMYRLRCKSPRAEQTCRR 451 (707)
T ss_pred eEEEEEEccCCCCCCCccccccccCCeeeeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCcccccccccccccccccccc
Confidence 45678889999999999999987665 368999999999999974 999999 8888633221 1
Q ss_pred -------------ccHHHHHHHHHHHHHhCCCc-EEEeec--C-CCC-CChHHHHHHHHcCcc-ccccccc-chHHHHHH
Q 017200 190 -------------QGSGHFAQTVRKLKELKPNM-LIEALV--P-DFR-GNNGCVREVAKSGLN-VFAHNIE-TVEELQSA 249 (375)
Q Consensus 190 -------------~G~~~~~~lir~Ik~~~p~i-~Ie~l~--p-d~~-g~~e~l~~L~~aGld-v~~hnlE-tv~rl~~~ 249 (375)
..-..+.+++++|++. |++ +|.+.. | |+. .+++.++.+.+..+- .+...+| .++++++.
T Consensus 452 ~~Cl~P~~C~nL~~dh~~l~eLLrkLr~I-pGVKkVrI~SgiR~Dl~l~d~elIeel~~~hV~g~LkVppEH~Sd~VLk~ 530 (707)
T PRK01254 452 LSCVYPDICPHLDTDHEPTINLYRRARDL-KGIKKILIASGVRYDLAVEDPRYVKELVTHHVGGYLKIAPEHTEEGPLSK 530 (707)
T ss_pred ccccCcccccccCCCHHHHHHHHHHHHhC-CCceEEEEEcCCCccccccCHHHHHHHHHhCCccccccccccCCHHHHHH
Confidence 1125789999999863 554 444433 3 332 247788989885433 2233467 45799999
Q ss_pred hcCCC--CCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEee
Q 017200 250 VRDHR--ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 250 mr~r~--~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i 309 (375)
|+ +. ++++++.++++.+++..|..+.+.+.+|+|| |||++|+.+++++|++++++...+
T Consensus 531 M~-Kp~~~~~e~F~e~f~rirk~~gk~q~LipyfIvGhPGeTeeDf~eLaefLkel~f~~eQV 592 (707)
T PRK01254 531 MM-KPGMGSYDRFKELFDKYSKEAGKEQYLIPYFISAHPGTTDEDMVNLALWLKKNRFRLDQV 592 (707)
T ss_pred hC-CCCcccHHHHHHHHHHHHHHCCCCeEEEEeEEEECCCCCHHHHHHHHHHHHHhCCCccee
Confidence 98 55 7899999999999998775577889999999 999999999999999999865444
|
|
| >TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-15 Score=157.43 Aligned_cols=169 Identities=11% Similarity=0.190 Sum_probs=135.4
Q ss_pred EeeeCCccCCCCcCCCCCCCC-C--CCCCCcchHHHHHHHHHhc--CCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC
Q 017200 132 IMILGDTCTRGCRFCNVKTSR-A--PPPPDPDEPTNVAEAIASW--GLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK 206 (375)
Q Consensus 132 fm~i~d~C~~~C~FC~v~~~r-~--~~~ld~eEi~~~a~al~~~--G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~ 206 (375)
.+..+.||+.+|+||.++... + -...+++.++++++.+.+. |+++|.+...+ +. ....++.++++.|++.
T Consensus 199 ~i~tsRGCp~~C~FC~~~~~~~g~~~r~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~---f~-~~~~~~~~l~~~l~~~- 273 (472)
T TIGR03471 199 SLYTGRGCPSKCTFCLWPQTVGGHRYRTRSAESVIEEVKYALENFPEVREFFFDDDT---FT-DDKPRAEEIARKLGPL- 273 (472)
T ss_pred EEEecCCCCCCCCCCCCCccCCCCceEeCCHHHHHHHHHHHHHhcCCCcEEEEeCCC---CC-CCHHHHHHHHHHHhhc-
Confidence 345689999999999987421 1 1247899999999988875 78999885321 11 1245678888888764
Q ss_pred CCcEEEeecC-CCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEe
Q 017200 207 PNMLIEALVP-DFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG 284 (375)
Q Consensus 207 p~i~Ie~l~p-d~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvG 284 (375)
++...+... ++ +.+.++.|+++|+..+..++|+. +++++.|+ ++.+.++..+.++.+++ .|+.+..++|+|
T Consensus 274 -~i~~~~~~~~~~--~~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~-K~~~~~~~~~~i~~~~~---~Gi~v~~~~IiG 346 (472)
T TIGR03471 274 -GVTWSCNARANV--DYETLKVMKENGLRLLLVGYESGDQQILKNIK-KGLTVEIARRFTRDCHK---LGIKVHGTFILG 346 (472)
T ss_pred -CceEEEEecCCC--CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHH---CCCeEEEEEEEe
Confidence 344444332 33 78999999999999999999975 59999998 78999999999999999 589999999999
Q ss_pred c-CCCHHHHHHHHHHHHHcCCcEEeeecC
Q 017200 285 C-GETPDQVVSTMEKVRAAGVDVMTFGQY 312 (375)
Q Consensus 285 l-GET~ee~~etl~~Lrelgvd~v~i~qY 312 (375)
+ |||.|++.++++++.+++++.+.+..+
T Consensus 347 lPget~e~~~~ti~~~~~l~~~~~~~~~l 375 (472)
T TIGR03471 347 LPGETRETIRKTIDFAKELNPHTIQVSLA 375 (472)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCceeeeec
Confidence 9 999999999999999999998877443
|
One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift. |
| >TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-15 Score=158.22 Aligned_cols=174 Identities=12% Similarity=0.215 Sum_probs=138.5
Q ss_pred EEEeeeCCccCCCCcCCCCCCC-CCCCCCCcchHHHHHHHHH-hcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC
Q 017200 130 ATIMILGDTCTRGCRFCNVKTS-RAPPPPDPDEPTNVAEAIA-SWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (375)
Q Consensus 130 atfm~i~d~C~~~C~FC~v~~~-r~~~~ld~eEi~~~a~al~-~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p 207 (375)
+..+..+.||+.+|+||.++.. +.-...+++.++++++.+. +.|++.+.++..+ +.....++.+++++|.+..|
T Consensus 194 ~~~i~tSRGCp~~C~FC~~~~~~~~~R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~----f~~~~~~~~~l~~~l~~~~~ 269 (497)
T TIGR02026 194 VAVPNFARGCPFTCNFCSQWKFWRRYRHRDPKKFVDEIEWLVRTHGVGFFILADEE----PTINRKKFQEFCEEIIARNP 269 (497)
T ss_pred eeeeeccCCCCCCCCCCCCCCCCceeecCCHHHHHHHHHHHHHHcCCCEEEEEecc----cccCHHHHHHHHHHHHhcCC
Confidence 3446679999999999998763 2223478999999998876 4799999886432 11124678899999887642
Q ss_pred -CcEEEeec-CC-CCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEE
Q 017200 208 -NMLIEALV-PD-FRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIML 283 (375)
Q Consensus 208 -~i~Ie~l~-pd-~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imv 283 (375)
.+...+.+ .+ ...+.+.++.++++|+..+..++|+. +++++.|+ ++.+.++..+.++.+++ .|+.+..++|+
T Consensus 270 l~i~w~~~~r~~~i~~d~ell~~l~~aG~~~v~iGiES~~~~~L~~~~-K~~t~~~~~~ai~~l~~---~Gi~~~~~~I~ 345 (497)
T TIGR02026 270 ISVTWGINTRVTDIVRDADILHLYRRAGLVHISLGTEAAAQATLDHFR-KGTTTSTNKEAIRLLRQ---HNILSEAQFIT 345 (497)
T ss_pred CCeEEEEecccccccCCHHHHHHHHHhCCcEEEEccccCCHHHHHHhc-CCCCHHHHHHHHHHHHH---CCCcEEEEEEE
Confidence 34433332 22 22367899999999999999999975 59999999 79999999999999999 68999999999
Q ss_pred ec-CCCHHHHHHHHHHHHHcCCcEEeeec
Q 017200 284 GC-GETPDQVVSTMEKVRAAGVDVMTFGQ 311 (375)
Q Consensus 284 Gl-GET~ee~~etl~~Lrelgvd~v~i~q 311 (375)
|+ |||.|++.++++++.+++++.+.+..
T Consensus 346 G~P~et~e~~~~t~~~~~~l~~~~~~~~~ 374 (497)
T TIGR02026 346 GFENETDETFEETYRQLLDWDPDQANWLM 374 (497)
T ss_pred ECCCCCHHHHHHHHHHHHHcCCCceEEEE
Confidence 99 99999999999999999999888743
|
This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase. |
| >cd01335 Radical_SAM Radical SAM superfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-15 Score=132.52 Aligned_cols=172 Identities=19% Similarity=0.335 Sum_probs=137.8
Q ss_pred eeCCccCCCCcCCCCCCCCCCCCCCc---chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcE
Q 017200 134 ILGDTCTRGCRFCNVKTSRAPPPPDP---DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNML 210 (375)
Q Consensus 134 ~i~d~C~~~C~FC~v~~~r~~~~ld~---eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~ 210 (375)
..+++|+.+|.||............. +++...+......|...+.++||+.-..+ ++.++++.+++..+++.
T Consensus 2 ~~~~~C~~~C~fC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ggep~~~~-----~~~~~i~~~~~~~~~~~ 76 (204)
T cd01335 2 ELTRGCNLNCGFCSNPASKGRGPESPPEIEEILDIVLEAKERGVEVVILTGGEPLLYP-----ELAELLRRLKKELPGFE 76 (204)
T ss_pred ccCCccCCcCCCCCCCCCCCCCccccccHHHHHHHHHHHHhcCceEEEEeCCcCCccH-----hHHHHHHHHHhhCCCce
Confidence 35789999999999987543322222 46777777788889999999888654322 68899999998767777
Q ss_pred EEeecCCCCCChHHHHHHHHcCcccccccccchH-HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCC
Q 017200 211 IEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GET 288 (375)
Q Consensus 211 Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET 288 (375)
+.+.+-...-+.+.++.|+++|++.+.+++|+.+ ..+..+.....+++++++.++.+++. |+.+.+++|+|+ +++
T Consensus 77 ~~i~T~~~~~~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~i~g~~~~~ 153 (204)
T cd01335 77 ISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIRGSGESFKERLEALKELREA---GLGLSTTLLVGLGDED 153 (204)
T ss_pred EEEEcCcccCCHHHHHHHHhCCCceEEEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHHc---CCCceEEEEEecCCCh
Confidence 7776654322689999999999999999999875 77777753478999999999999994 788999999999 556
Q ss_pred HHHHHHHHHHHHHcC-CcEEeeecCC
Q 017200 289 PDQVVSTMEKVRAAG-VDVMTFGQYM 313 (375)
Q Consensus 289 ~ee~~etl~~Lrelg-vd~v~i~qYl 313 (375)
.+++.++++.+.+.+ ++.+.+.+|.
T Consensus 154 ~~~~~~~~~~l~~~~~~~~~~~~~~~ 179 (204)
T cd01335 154 EEDDLEELELLAEFRSPDRVSLFRLL 179 (204)
T ss_pred hHHHHHHHHHHHhhcCcchhhhhhhc
Confidence 699999999999998 9999987775
|
Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o |
| >PRK08207 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.3e-15 Score=156.30 Aligned_cols=228 Identities=17% Similarity=0.250 Sum_probs=159.1
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCC--CCCCC---CcchHHHHHHHHHh------cCCcEEEEEeeeCCCCCcccHHHHHH
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSR--APPPP---DPDEPTNVAEAIAS------WGLDYVVITSVDRDDLADQGSGHFAQ 197 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r--~~~~l---d~eEi~~~a~al~~------~G~~eIvLTsgdr~dl~d~G~~~~~~ 197 (375)
..-|+-+ -.|+.+|.||+++... +...+ -.+.++++++.+.+ .++..|.+.||+..-++ .+.+.+
T Consensus 164 ~sLYihI-PFC~~~C~YCsf~s~~~~~~~~~~~~Y~~aL~~EI~~~~~~~~~~~~~v~tIyfGGGTPt~L~---~~~L~~ 239 (488)
T PRK08207 164 VSIYIGI-PFCPTRCLYCSFPSYPIKGYKGLVEPYLEALHYEIEEIGKYLKEKGLKITTIYFGGGTPTSLT---AEELER 239 (488)
T ss_pred eEEEEec-CCCCCcCCCCCCccccCCCCcchHHHHHHHHHHHHHHHHhhhcccCCceeEEEEeCCCccCCC---HHHHHH
Confidence 3444433 4799999999998641 11111 12333444443321 25678888888755454 567888
Q ss_pred HHHHHHHhCCC------cEEEeecCCCCCChHHHHHHHHcCcccccccccchH-HHHHHhcCCCCCHHHHHHHHHHHHHh
Q 017200 198 TVRKLKELKPN------MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDY 270 (375)
Q Consensus 198 lir~Ik~~~p~------i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl~~ak~~ 270 (375)
+++.|++.+|+ +.+++..|+.. +.+.++.|+++|++.+.+|+|+.+ ++++.|+ |++++++.++.++.+++
T Consensus 240 Ll~~i~~~f~~~~~~~EiTvE~grPd~i-t~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~ig-R~ht~e~v~~ai~~ar~- 316 (488)
T PRK08207 240 LLEEIYENFPDVKNVKEFTVEAGRPDTI-TEEKLEVLKKYGVDRISINPQTMNDETLKAIG-RHHTVEDIIEKFHLARE- 316 (488)
T ss_pred HHHHHHHhccccCCceEEEEEcCCCCCC-CHHHHHHHHhcCCCeEEEcCCcCCHHHHHHhC-CCCCHHHHHHHHHHHHh-
Confidence 88888876642 34455567655 799999999999999999999864 9999998 89999999999999999
Q ss_pred CCCCc-eEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCcc----cc--CCHHH----HHHHHHHH
Q 017200 271 VPAGT-LTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVS----EY--ITPEA----FERYRALG 338 (375)
Q Consensus 271 ~p~Gl-~tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~----~~--v~pe~----~~~l~~~a 338 (375)
.|+ .++.++|+|+ |||.+++.++++.+.+++++.+++..+. + .+++++. .+ ...++ ++...+..
T Consensus 317 --~Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~L~pd~isv~~L~-i-~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~l 392 (488)
T PRK08207 317 --MGFDNINMDLIIGLPGEGLEEVKHTLEEIEKLNPESLTVHTLA-I-KRASRLTENKEKYKVADREEIEKMMEEAEEWA 392 (488)
T ss_pred --CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhcCcCEEEEEece-E-cCCChHHHhcCcCCCcCHHHHHHHHHHHHHHH
Confidence 577 7999999999 9999999999999999999999997663 2 1222322 11 22333 34445556
Q ss_pred HHhhhhhh-------ccchhhhhhcch-hHHHHHHHH
Q 017200 339 MEMGFRYV-------ASGPMVRSSYKV-VGWCYYLIF 367 (375)
Q Consensus 339 ~~~gf~~~-------~sgp~vrssy~a-~~~~~~~~~ 367 (375)
.++||... +.|.+--|.|-. |...+-|+.
T Consensus 393 ~~~Gy~~Yylyrqk~~~~n~E~~~ya~~g~~~~~N~~ 429 (488)
T PRK08207 393 KELGYVPYYLYRQKNMLGNLENVGYAKPGKESIYNIQ 429 (488)
T ss_pred HHcCCHhhhhhhccccccccceecccCCCcchhhHHH
Confidence 66788653 556565566654 344555554
|
|
| >PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-15 Score=131.92 Aligned_cols=157 Identities=18% Similarity=0.331 Sum_probs=123.2
Q ss_pred eeCCccCCCCcCCCCCCC--CC-CCCCCcchHHHHHHHH-HhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC-CC
Q 017200 134 ILGDTCTRGCRFCNVKTS--RA-PPPPDPDEPTNVAEAI-ASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK-PN 208 (375)
Q Consensus 134 ~i~d~C~~~C~FC~v~~~--r~-~~~ld~eEi~~~a~al-~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~-p~ 208 (375)
..+++|+.+|.||..+.. .. ...++++++++.++.+ ...|.+.+.++||+....++ +.+.+..+.+.. +.
T Consensus 2 ~~~~~C~~~C~fC~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~i~~~~gep~~~~~-----~~~~~~~~~~~~~~~ 76 (166)
T PF04055_consen 2 ETTRGCNLNCSFCYYPRSRRKNKPREMSPEEILEEIKELKQDKGVKEIFFGGGEPTLHPD-----FIELLELLRKIKKRG 76 (166)
T ss_dssp EEESEESS--TTTSTTTTCCTCGCEECHHHHHHHHHHHHHHHTTHEEEEEESSTGGGSCH-----HHHHHHHHHHCTCTT
T ss_pred EECcCcCccCCCCCCCccCCCcccccCCHHHHHHHHHHHhHhcCCcEEEEeecCCCcchh-----HHHHHHHHHHhhccc
Confidence 468999999999999974 21 2248999999999999 68898888888776443333 566666666542 56
Q ss_pred cEEEeecCCCCCChHHHHHHHHcCcccccccccchH-H-HHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-
Q 017200 209 MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-E-LQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC- 285 (375)
Q Consensus 209 i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-r-l~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl- 285 (375)
+.+.+.+....-+.+.++.++++|++.+..++|+.+ + +.+.++ ++.++++.++.++.+++ .|+.....+|+|+
T Consensus 77 ~~i~~~t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~-~~~~~~~~~~~l~~l~~---~g~~~~~~~i~~~~ 152 (166)
T PF04055_consen 77 IRISINTNGTLLDEELLDELKKLGVDRIRISLESLDEESVLRIIN-RGKSFERVLEALERLKE---AGIPRVIIFIVGLP 152 (166)
T ss_dssp EEEEEEEESTTHCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHS-STSHHHHHHHHHHHHHH---TTSETEEEEEEEBT
T ss_pred cceeeeccccchhHHHHHHHHhcCccEEecccccCCHHHhhhhhc-CCCCHHHHHHHHHHHHH---cCCCcEEEEEEEeC
Confidence 777776665543589999999999999999999875 6 888888 78999999999999999 5676467777777
Q ss_pred CCCHHHHHHHHHHH
Q 017200 286 GETPDQVVSTMEKV 299 (375)
Q Consensus 286 GET~ee~~etl~~L 299 (375)
|||++|+.++++++
T Consensus 153 ~~~~~e~~~~~~~i 166 (166)
T PF04055_consen 153 GENDEEIEETIRFI 166 (166)
T ss_dssp TTSHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCcC
Confidence 99999999999875
|
Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A .... |
| >PRK00955 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.3e-15 Score=158.74 Aligned_cols=185 Identities=12% Similarity=0.186 Sum_probs=128.8
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC--CCCcchHHHHHHHHHhc-CCcEEE--EEeeeCCCCC---------------
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAPP--PPDPDEPTNVAEAIASW-GLDYVV--ITSVDRDDLA--------------- 188 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~~--~ld~eEi~~~a~al~~~-G~~eIv--LTsgdr~dl~--------------- 188 (375)
..+.+.+++||..+|+||+++..++.. +.++++|+++++.+.+. |+++++ |+|.+-.-+.
T Consensus 292 i~~sI~i~RGC~g~CSFCaIp~~rGr~~rSRs~esIv~Evk~L~~~~gfkg~I~DlgGptan~Yg~~c~~~~~~~~c~~~ 371 (620)
T PRK00955 292 VKFSITSHRGCFGGCSFCAITFHQGRFIQSRSQESILREAKELTEMPDFKGYIHDVGGPTANFRKMACKKQLKCGACKNK 371 (620)
T ss_pred EEEEEEeeCCCCCCCCCCCeecccCCcceecCHHHHHHHHHHHHhccCCeEEEEeCCCCCcccccccccccccccccccc
Confidence 345567899999999999999876553 69999999999999887 888774 2232211110
Q ss_pred -----------cccHHHHHHHHHHHHHhCCCc-EEEeecC---CCC---CChHHHHHHHHcCcc-cccccccc-hHHHHH
Q 017200 189 -----------DQGSGHFAQTVRKLKELKPNM-LIEALVP---DFR---GNNGCVREVAKSGLN-VFAHNIET-VEELQS 248 (375)
Q Consensus 189 -----------d~G~~~~~~lir~Ik~~~p~i-~Ie~l~p---d~~---g~~e~l~~L~~aGld-v~~hnlEt-v~rl~~ 248 (375)
+..-..+.+++++|++. |++ ++.+.++ |+. .+.+.++.|.+..+. .+...+|+ ++++++
T Consensus 372 ~clfp~~c~nl~~d~~~l~~LLr~l~~l-~gvkrv~isSGIR~D~l~~~~~~~~l~eL~~~~vsg~L~IapESgSd~VLk 450 (620)
T PRK00955 372 QCLFPKPCKNLDVDHKEYLELLRKVRKL-PGVKKVFIRSGIRYDYLLHDKNDEFFEELCEHHVSGQLKVAPEHISDRVLK 450 (620)
T ss_pred ccccCccccccCcChHHHHHHHHHHhcc-CCceEEEeecceeccccccCCcHHHHHHHHHHhcCCCceeCcCCCChHHHH
Confidence 01124689999999764 443 3332221 221 134578888775332 34556786 569999
Q ss_pred HhcCCCCCHHHHHHHHHHHHHhCCC-Cc--eEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCC
Q 017200 249 AVRDHRANFKQSLDVLMMAKDYVPA-GT--LTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPS 316 (375)
Q Consensus 249 ~mr~r~~s~~~~l~vl~~ak~~~p~-Gl--~tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~ 316 (375)
.|+ +. +.+.+.+.++.+.++.+. |+ .+.++||+|| |||++|+.++++++++++++.+.++.|. .|.
T Consensus 451 ~M~-K~-~~~~~~~f~~~~~~i~~~~G~~~~I~~yfIvGfPGETeEDf~et~eflkel~~~~~qV~~fTP~PG 521 (620)
T PRK00955 451 LMG-KP-SREVYDKFVKKFDRINKKLGKKQYLVPYLMSSHPGSTLEDAIELAEYTKDLGYQPEQVQDFYPTPG 521 (620)
T ss_pred HhC-CC-CHHHHHHHHHHHHHhhhhcCCCccEEEEEEEECCCCCHHHHHHHHHHHHHcCCCcceeeeeecCCC
Confidence 998 44 656666666555554433 33 4899999999 9999999999999999999998887664 453
|
|
| >PRK08599 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.2e-15 Score=150.26 Aligned_cols=216 Identities=14% Similarity=0.192 Sum_probs=151.4
Q ss_pred EEEeeeCCccCCCCcCCCCCCC--CCC-CCCCcchHHHHHHHHHhc---CCcEEEEEeeeCCCCCcccHHHHHHHHHHHH
Q 017200 130 ATIMILGDTCTRGCRFCNVKTS--RAP-PPPDPDEPTNVAEAIASW---GLDYVVITSVDRDDLADQGSGHFAQTVRKLK 203 (375)
Q Consensus 130 atfm~i~d~C~~~C~FC~v~~~--r~~-~~ld~eEi~~~a~al~~~---G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik 203 (375)
.-|+-+- .|+..|.||.++.. ++. ....++.++++++.+... +++.|.+.||+...++ ..++.++++.|+
T Consensus 3 ~lYihiP-fC~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~i~~i~~gGGtpt~l~---~~~l~~ll~~i~ 78 (377)
T PRK08599 3 SAYIHIP-FCEHICYYCDFNKVFIKNQPVDEYLDALIKEMNTYAIRPFDKLKTIYIGGGTPTALS---AEQLERLLTAIH 78 (377)
T ss_pred eEEEEeC-CcCCCCCCCCCeeeccCccCHHHHHHHHHHHHHHhhhcCCCceeEEEeCCCCcccCC---HHHHHHHHHHHH
Confidence 3455555 49999999998853 221 113456677777666554 4677777666543333 567889999998
Q ss_pred HhCC---CcEEEe-ecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCce-E
Q 017200 204 ELKP---NMLIEA-LVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-T 277 (375)
Q Consensus 204 ~~~p---~i~Ie~-l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~-t 277 (375)
+.++ .+.+.+ ..|+.. +.+.++.|+++|++.+..++|+. +++++.|+ |++++++.++.++.+++ .|+. +
T Consensus 79 ~~~~~~~~~eit~e~~p~~l-~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~-r~~~~~~~~~~i~~l~~---~g~~~v 153 (377)
T PRK08599 79 RNLPLSGLEEFTFEANPGDL-TKEKLQVLKDSGVNRISLGVQTFNDELLKKIG-RTHNEEDVYEAIANAKK---AGFDNI 153 (377)
T ss_pred HhCCCCCCCEEEEEeCCCCC-CHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHHHHHHHHHHHHH---cCCCcE
Confidence 8653 223332 345543 78999999999999999999986 59999999 89999999999999999 4665 7
Q ss_pred EEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCC--------Ccc-ccCCHHHHHHHHHHHHHhhhhhh
Q 017200 278 KTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHM--------PVS-EYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 278 kt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~--------~v~-~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
+.++|+|+ |||.+++.++++.+.+++++.+++..+. .|.+... ++. .....+.++...+...+.||...
T Consensus 154 ~~dli~GlPgqt~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~~~ 233 (377)
T PRK08599 154 SIDLIYALPGQTIEDFKESLAKALALDIPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGFHQY 233 (377)
T ss_pred EEeeecCCCCCCHHHHHHHHHHHHccCCCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCcEe
Confidence 89999999 9999999999999999999998886553 3422110 000 00112234445556666788766
Q ss_pred ccchhhhh
Q 017200 347 ASGPMVRS 354 (375)
Q Consensus 347 ~sgp~vrs 354 (375)
...-++|.
T Consensus 234 ~~~~fa~~ 241 (377)
T PRK08599 234 EISNFAKP 241 (377)
T ss_pred eeeeeeCC
Confidence 54445554
|
|
| >TIGR01212 radical SAM protein, TIGR01212 family | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-14 Score=142.81 Aligned_cols=178 Identities=14% Similarity=0.181 Sum_probs=128.3
Q ss_pred hhcCCCCcccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCCCCC---CCCcchHHHHHH----HHHhcCCcEEEEEe
Q 017200 109 EEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPP---PPDPDEPTNVAE----AIASWGLDYVVITS 181 (375)
Q Consensus 109 eeA~cpn~~ec~~~~~~~~~tatfm~i~d~C~~~C~FC~v~~~r~~~---~ld~eEi~~~a~----al~~~G~~eIvLTs 181 (375)
....|||+.-.-| ..+|.||+...+..-. ..+.++|.+.++ .....+..-|.++|
T Consensus 24 ~g~~cpnrdg~~~------------------~~gC~FC~~~~~~~~~~~~~~~~~~i~~qi~~~~~~~~~~~~~~iyf~g 85 (302)
T TIGR01212 24 GGFSCPNRDGTKG------------------RGGCTFCNDASRPIFADEYTQARIPIKEQIKKQMKKYKKDKKFIAYFQA 85 (302)
T ss_pred CCCCCCCCCCCCC------------------CCCcccCCCCCCccccccccccCCCHHHHHHHHHHHhhccCEEEEEEEC
Confidence 4567999863222 4689999986543111 123344443333 23333333378888
Q ss_pred eeCCCCCcccHHHHHHHHHHHHHhCCC-cEEEe-ecCCCCCChHHHH---HHHHcCcc-cccccccch-HHHHHHhcCCC
Q 017200 182 VDRDDLADQGSGHFAQTVRKLKELKPN-MLIEA-LVPDFRGNNGCVR---EVAKSGLN-VFAHNIETV-EELQSAVRDHR 254 (375)
Q Consensus 182 gdr~dl~d~G~~~~~~lir~Ik~~~p~-i~Ie~-l~pd~~g~~e~l~---~L~~aGld-v~~hnlEtv-~rl~~~mr~r~ 254 (375)
|+...++ .+++.++++.+++ .|. +.+.+ ..|+.. +.+.++ .++++|++ .+..++|+. +++++.|+ |+
T Consensus 86 gt~t~l~---~~~L~~l~~~i~~-~~~~~~isi~trpd~l-~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~-Rg 159 (302)
T TIGR01212 86 YTNTYAP---VEVLKEMYEQALS-YDDVVGLSVGTRPDCV-PDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKIN-RG 159 (302)
T ss_pred CCcCCCC---HHHHHHHHHHHhC-CCCEEEEEEEecCCcC-CHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHc-Cc
Confidence 8866565 6788899998887 454 23333 246644 555444 45567985 588899976 59999999 89
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 255 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 255 ~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
+++++.++.++.+++ .|+.+++++|+|+ |||.+++.++++.+.+++++.+.+.++.
T Consensus 160 ~t~~~~~~ai~~l~~---~gi~v~~~lI~GlPget~e~~~~t~~~l~~l~~d~i~i~~l~ 216 (302)
T TIGR01212 160 HDFACYVDAVKRARK---RGIKVCSHVILGLPGEDREEMMETAKIVSLLDVDGIKIHPLH 216 (302)
T ss_pred ChHHHHHHHHHHHHH---cCCEEEEeEEECCCCCCHHHHHHHHHHHHhcCCCEEEEEEEE
Confidence 999999999999999 5899999999999 9999999999999999999999986553
|
This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain. |
| >PRK13361 molybdenum cofactor biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.7e-14 Score=139.56 Aligned_cols=186 Identities=20% Similarity=0.280 Sum_probs=138.1
Q ss_pred eeeCCccCCCCcCCCCCCCC---CCCCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCc
Q 017200 133 MILGDTCTRGCRFCNVKTSR---APPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM 209 (375)
Q Consensus 133 m~i~d~C~~~C~FC~v~~~r---~~~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i 209 (375)
+.+++.|+.+|.||...... ....++.+|+.+.++++.+.|++.|.||||+.--.+ .+.++++.+++. +.+
T Consensus 18 i~iT~~CNl~C~yC~~~~~~~~~~~~~ls~eei~~li~~~~~~Gv~~I~~tGGEPllr~-----dl~~li~~i~~~-~~l 91 (329)
T PRK13361 18 LSVTDRCDFRCVYCMSEDPCFLPRDQVLSLEELAWLAQAFTELGVRKIRLTGGEPLVRR-----GCDQLVARLGKL-PGL 91 (329)
T ss_pred EEecCCccccCCCCCCCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECcCCCccc-----cHHHHHHHHHhC-CCC
Confidence 34699999999999855321 122489999999999999999999999999742222 267888888764 333
Q ss_pred -EEEeecCCCCCChHHHHHHHHcCcccccccccchH-HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCc-eEEEeEEEecC
Q 017200 210 -LIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGT-LTKTSIMLGCG 286 (375)
Q Consensus 210 -~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl-~tkt~imvGlG 286 (375)
.+.+.+-... ..+.++.|+++|++.++..+++.+ +.|.+++ ++.++++.++.++.+++ .|+ .++.++++--|
T Consensus 92 ~~i~itTNG~l-l~~~~~~L~~aGl~~v~ISlDs~~~e~~~~i~-~~g~~~~vl~~i~~~~~---~Gi~~v~in~v~~~g 166 (329)
T PRK13361 92 EELSLTTNGSR-LARFAAELADAGLKRLNISLDTLRPELFAALT-RNGRLERVIAGIDAAKA---AGFERIKLNAVILRG 166 (329)
T ss_pred ceEEEEeChhH-HHHHHHHHHHcCCCeEEEEeccCCHHHhhhhc-CCCCHHHHHHHHHHHHH---cCCCceEEEEEEECC
Confidence 3444332211 246789999999999999999874 9999999 68899999999999998 467 67777665449
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCC--ccccCCHHHH
Q 017200 287 ETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMP--VSEYITPEAF 331 (375)
Q Consensus 287 ET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~--v~~~v~pe~~ 331 (375)
++++|+.+.+++++++++++. |..|| |...... -..+++++++
T Consensus 167 ~N~~ei~~~~~~~~~~gi~~~-~ie~m-P~g~~~~~~~~~~~~~~e~ 211 (329)
T PRK13361 167 QNDDEVLDLVEFCRERGLDIA-FIEEM-PLGEIDERRRARHCSSDEV 211 (329)
T ss_pred CCHHHHHHHHHHHHhcCCeEE-EEecc-cCCCccchhhccCcCHHHH
Confidence 999999999999999999876 43565 6332211 2245566554
|
|
| >PRK05660 HemN family oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.4e-14 Score=142.45 Aligned_cols=209 Identities=11% Similarity=0.197 Sum_probs=146.3
Q ss_pred CccCCCCcCCCCCCCCCCCCCCcch-HHHHHHHHH-------hcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC-
Q 017200 137 DTCTRGCRFCNVKTSRAPPPPDPDE-PTNVAEAIA-------SWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP- 207 (375)
Q Consensus 137 d~C~~~C~FC~v~~~r~~~~ld~eE-i~~~a~al~-------~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p- 207 (375)
--|+..|.||.+.+.......+.++ +....+++. ..+++.|.|.||+-.-++ .+.+.++++.|++.+|
T Consensus 14 PFC~~~C~yC~f~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~v~ti~~GGGtPs~l~---~~~l~~ll~~l~~~~~~ 90 (378)
T PRK05660 14 PWCVQKCPYCDFNSHALKGEVPEDEYVDHLLADLDADLPLVQGREVHSIFIGGGTPSLFS---AEAIQRLLDGVRARLPF 90 (378)
T ss_pred CCccCcCCCCCCeecCCCCcCCHHHHHHHHHHHHHHHhHhccCCceeEEEeCCCccccCC---HHHHHHHHHHHHHhCCC
Confidence 3699999999997643111222233 222222222 257899999999866555 4678888888887653
Q ss_pred ----CcEEEeecCCCCCChHHHHHHHHcCcccccccccchH-HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCce-EEEeE
Q 017200 208 ----NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TKTSI 281 (375)
Q Consensus 208 ----~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~-tkt~i 281 (375)
.+.+++ .|+.. +.+.++.|+++|++.+..++|+.+ ++++.|+ |.++.++.++.++.+++ .|+. ++.++
T Consensus 91 ~~~~eit~e~-np~~l-~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~-r~~~~~~~~~ai~~~~~---~G~~~v~~dl 164 (378)
T PRK05660 91 APDAEITMEA-NPGTV-EADRFVGYQRAGVNRISIGVQSFSEEKLKRLG-RIHGPDEAKRAAKLAQG---LGLRSFNLDL 164 (378)
T ss_pred CCCcEEEEEe-CcCcC-CHHHHHHHHHcCCCEEEeccCcCCHHHHHHhC-CCCCHHHHHHHHHHHHH---cCCCeEEEEe
Confidence 234444 34433 789999999999999999999765 9999999 89999999999999999 5774 69999
Q ss_pred EEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCC-ccccCCHH----HHHHHHHHHHHhhhhhhccchhhhh
Q 017200 282 MLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMP-VSEYITPE----AFERYRALGMEMGFRYVASGPMVRS 354 (375)
Q Consensus 282 mvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~-v~~~v~pe----~~~~l~~~a~~~gf~~~~sgp~vrs 354 (375)
|+|+ |||.+++.++++.+.+++++.|.+.++. .|.+.-.. .......+ .++...++-.+.||......-+.|-
T Consensus 165 i~Glpgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yei~~fa~~ 244 (378)
T PRK05660 165 MHGLPDQSLEEALDDLRQAIALNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQQYETSAYAKP 244 (378)
T ss_pred ecCCCCCCHHHHHHHHHHHHhcCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCCcEeecccccCC
Confidence 9999 9999999999999999999999987664 34321111 11112222 2333444555668765543334443
|
|
| >PRK05799 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.8e-14 Score=143.24 Aligned_cols=207 Identities=13% Similarity=0.183 Sum_probs=143.4
Q ss_pred CccCCCCcCCCCCCCCCCCCC---CcchHHHHHHHHH-hcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHh--CCCcE
Q 017200 137 DTCTRGCRFCNVKTSRAPPPP---DPDEPTNVAEAIA-SWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL--KPNML 210 (375)
Q Consensus 137 d~C~~~C~FC~v~~~r~~~~l---d~eEi~~~a~al~-~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~--~p~i~ 210 (375)
--|+..|.||.++...+.... .++.++++++.+. ..+++.|.|.||+...++ .+.+..+++.|++. .+.+.
T Consensus 11 PfC~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~i~~gGGtps~l~---~~~l~~L~~~i~~~~~~~~~e 87 (374)
T PRK05799 11 PFCKQKCLYCDFPSYSGKEDLMMEYIKALSKEIRNSTKNKKIKSIFIGGGTPTYLS---LEALEILKETIKKLNKKEDLE 87 (374)
T ss_pred CCccCCCCCCCCCcccCCcchHHHHHHHHHHHHHhhcCCCceeEEEECCCcccCCC---HHHHHHHHHHHHhCCCCCCCE
Confidence 359999999999865322222 2444555544332 235778888887654444 34555666666542 13344
Q ss_pred EEe-ecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCce-EEEeEEEec-C
Q 017200 211 IEA-LVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLGC-G 286 (375)
Q Consensus 211 Ie~-l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~-tkt~imvGl-G 286 (375)
+.+ ..|+.. +++.++.|+++|++.+..++|+. +++++.++ |.+++++.++.++.+++ .|+. +..++|+|+ |
T Consensus 88 itie~~p~~~-t~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~-R~~~~~~~~~ai~~l~~---~g~~~v~~dli~GlPg 162 (374)
T PRK05799 88 FTVEGNPGTF-TEEKLKILKSMGVNRLSIGLQAWQNSLLKYLG-RIHTFEEFLENYKLARK---LGFNNINVDLMFGLPN 162 (374)
T ss_pred EEEEeCCCcC-CHHHHHHHHHcCCCEEEEECccCCHHHHHHcC-CCCCHHHHHHHHHHHHH---cCCCcEEEEeecCCCC
Confidence 443 345543 78999999999999999999976 49999998 89999999999999999 4674 899999999 9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCCccc------c--CCHHH----HHHHHHHHHHhhhhhhccchhhh
Q 017200 287 ETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSE------Y--ITPEA----FERYRALGMEMGFRYVASGPMVR 353 (375)
Q Consensus 287 ET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~v~~------~--v~pe~----~~~l~~~a~~~gf~~~~sgp~vr 353 (375)
||.+++.++++.+.+++++.+++..+. .|. +++.+ . ...+. ++...+.-.+.||......-++|
T Consensus 163 qt~e~~~~~l~~~~~l~~~~is~y~l~~~pg---T~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~~ye~~~fa~ 239 (374)
T PRK05799 163 QTLEDWKETLEKVVELNPEHISCYSLIIEEG---TPFYNLYENGKLKLPDEEEEREMYHYTIEFLKEKGYHQYEISNFAK 239 (374)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeccEecCC---CHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCcEEeeeeeEC
Confidence 999999999999999999999887653 343 33221 1 11222 33344555566887665444555
Q ss_pred h
Q 017200 354 S 354 (375)
Q Consensus 354 s 354 (375)
.
T Consensus 240 ~ 240 (374)
T PRK05799 240 P 240 (374)
T ss_pred C
Confidence 3
|
|
| >PRK05904 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.8e-14 Score=141.08 Aligned_cols=208 Identities=9% Similarity=0.118 Sum_probs=150.3
Q ss_pred CccCCCCcCCCCCCCCCC--C-C---CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC---
Q 017200 137 DTCTRGCRFCNVKTSRAP--P-P---PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP--- 207 (375)
Q Consensus 137 d~C~~~C~FC~v~~~r~~--~-~---ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p--- 207 (375)
--|...|.||.+.+.-.. . . .-.+|+.+.++.+....++.|-+-||+..-++ .+.+.++++.|++..+
T Consensus 14 PFC~~kC~yC~f~~~~~~~~~~~~~~~~~~~l~~ei~~~~~~~~~tiy~GGGTPs~L~---~~~l~~ll~~i~~~~~~~~ 90 (353)
T PRK05904 14 PFCQYICTFCDFKRILKTPQTKKIFKDFLKNIKMHIKNFKIKQFKTIYLGGGTPNCLN---DQLLDILLSTIKPYVDNNC 90 (353)
T ss_pred CCccCcCCCCCCeeccCCcccHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCccccCC---HHHHHHHHHHHHHhcCCCC
Confidence 469999999999863111 1 1 12344444444333345677777777755555 4678888888887653
Q ss_pred CcEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCce-EEEeEEEec
Q 017200 208 NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLGC 285 (375)
Q Consensus 208 ~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~-tkt~imvGl 285 (375)
.+.++ ..|+.. +.+.++.|+++|+..+..++|+. +++++.|+ |+++.++.++.++.+++ .|+. +..++|+|+
T Consensus 91 eitiE-~nP~~l-t~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~-R~~~~~~~~~ai~~lr~---~G~~~v~~dlI~Gl 164 (353)
T PRK05904 91 EFTIE-CNPELI-TQSQINLLKKNKVNRISLGVQSMNNNILKQLN-RTHTIQDSKEAINLLHK---NGIYNISCDFLYCL 164 (353)
T ss_pred eEEEE-eccCcC-CHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHHHHHHHHHHHHH---cCCCcEEEEEeecC
Confidence 24455 345543 78999999999999999999975 69999999 89999999999999999 4665 899999999
Q ss_pred -CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCC----ccccCCHHHHHHHHHHHHHhhhhhhccchhhh
Q 017200 286 -GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMP----VSEYITPEAFERYRALGMEMGFRYVASGPMVR 353 (375)
Q Consensus 286 -GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~----v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vr 353 (375)
|||.+++.++++.+.+++++.+.+..+. .|.+.-.+ +.+....+.++.+.++..+.||....-.-+.|
T Consensus 165 Pgqt~e~~~~tl~~~~~l~p~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yeisnfa~ 238 (353)
T PRK05904 165 PILKLKDLDEVFNFILKHKINHISFYSLEIKEGSILKKYHYTIDEDKEAEQLNYIKAKFNKLNYKRYEVSNWTN 238 (353)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEEeeEecCCChHhhcCCCCChHHHHHHHHHHHHHHHHcCCcEEechhhcC
Confidence 9999999999999999999999887774 45332111 11112234566777788888987654334555
|
|
| >TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.8e-14 Score=137.87 Aligned_cols=169 Identities=19% Similarity=0.266 Sum_probs=132.4
Q ss_pred eeCCccCCCCcCCCCCC-CC----CCCCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCC
Q 017200 134 ILGDTCTRGCRFCNVKT-SR----APPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN 208 (375)
Q Consensus 134 ~i~d~C~~~C~FC~v~~-~r----~~~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~ 208 (375)
.+++.|+.+|.||.... .. ....++.+|+.+.++.+.+.|++.|.||||+---.++ +.++++.+++. ++
T Consensus 15 ~vT~~CNl~C~yC~~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gv~~V~ltGGEPll~~~-----l~~li~~i~~~-~g 88 (334)
T TIGR02666 15 SVTDRCNLRCVYCMPEGGGLDFLPKEELLTFEEIERLVRAFVGLGVRKVRLTGGEPLLRKD-----LVELVARLAAL-PG 88 (334)
T ss_pred EecCccCcCCCCCCCCcCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECccccccCC-----HHHHHHHHHhc-CC
Confidence 46999999999999865 21 1234899999999999999999999999997432232 67788887653 44
Q ss_pred c-EEEeecCCCCCChHHHHHHHHcCcccccccccchH-HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCce-EEEeEEEec
Q 017200 209 M-LIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLGC 285 (375)
Q Consensus 209 i-~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~-tkt~imvGl 285 (375)
+ .+.+.+-... ..+.++.|+++|++.+++.+++.+ +.|+.++.++.++++.++.++.+++ .|+. ++.++++.-
T Consensus 89 i~~v~itTNG~l-l~~~~~~L~~~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~---~G~~~v~in~vv~~ 164 (334)
T TIGR02666 89 IEDIALTTNGLL-LARHAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALA---AGLEPVKLNTVVMR 164 (334)
T ss_pred CCeEEEEeCchh-HHHHHHHHHHcCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHH---cCCCcEEEEEEEeC
Confidence 5 5555442221 356889999999999999999865 8899998446799999999999999 4775 888887767
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 286 GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 286 GET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
|++++|+.+.+++++++++++ .+..|+
T Consensus 165 g~n~~ei~~l~~~~~~~gv~~-~~ie~m 191 (334)
T TIGR02666 165 GVNDDEIVDLAEFAKERGVTL-RFIELM 191 (334)
T ss_pred CCCHHHHHHHHHHHHhcCCeE-EEEecc
Confidence 999999999999999999974 343555
|
The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. |
| >PRK05628 coproporphyrinogen III oxidase; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.7e-14 Score=141.17 Aligned_cols=205 Identities=15% Similarity=0.227 Sum_probs=146.1
Q ss_pred ccCCCCcCCCCCCCC-CCC--CCC----cchHHHHHHHHHhc------CCcEEEEEeeeCCCCCcccHHHHHHHHHHHHH
Q 017200 138 TCTRGCRFCNVKTSR-APP--PPD----PDEPTNVAEAIASW------GLDYVVITSVDRDDLADQGSGHFAQTVRKLKE 204 (375)
Q Consensus 138 ~C~~~C~FC~v~~~r-~~~--~ld----~eEi~~~a~al~~~------G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~ 204 (375)
-|+..|.||.+.+.. ... ..+ .+.+.++++...+. .++.|.+.||+-.-++ ...+.++++.|++
T Consensus 11 FC~~~C~yC~f~~~~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGGTPs~l~---~~~l~~ll~~i~~ 87 (375)
T PRK05628 11 FCATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGGGTPSLLG---AEGLARVLDAVRD 87 (375)
T ss_pred CcCCcCCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHhhccCCCceeEEEeCCCccccCC---HHHHHHHHHHHHH
Confidence 699999999997532 111 111 34555555544332 3577777777654444 4667888888877
Q ss_pred hC---CCcEEEe-ecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCce-EE
Q 017200 205 LK---PNMLIEA-LVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TK 278 (375)
Q Consensus 205 ~~---p~i~Ie~-l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~-tk 278 (375)
.+ +++.+.+ ..|+.. +.+.++.|+++|++.+..++|+. +++++.|+ |.++.++.++.++.+++ .|+. ++
T Consensus 88 ~~~~~~~~e~t~e~~p~~i-~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~-R~~s~~~~~~a~~~l~~---~g~~~v~ 162 (375)
T PRK05628 88 TFGLAPGAEVTTEANPEST-SPEFFAALRAAGFTRVSLGMQSAAPHVLAVLD-RTHTPGRAVAAAREARA---AGFEHVN 162 (375)
T ss_pred hCCCCCCCEEEEEeCCCCC-CHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHHHHHHHHHHHHH---cCCCcEE
Confidence 54 3333332 346543 78999999999999999999976 59999999 89999999999999999 5787 99
Q ss_pred EeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCCcccc--------CC----HHHHHHHHHHHHHhhhh
Q 017200 279 TSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEY--------IT----PEAFERYRALGMEMGFR 344 (375)
Q Consensus 279 t~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~v~~~--------v~----pe~~~~l~~~a~~~gf~ 344 (375)
.++|+|+ |||.+++.++++.+.+++++.+.+.++. .|. +++.+. +. .+.++...+.-.+.||.
T Consensus 163 ~dli~GlPgqt~~~~~~tl~~~~~l~~~~i~~y~l~~~~g---T~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G~~ 239 (375)
T PRK05628 163 LDLIYGTPGESDDDWRASLDAALEAGVDHVSAYALIVEDG---TALARRVRRGELPAPDDDVLADRYELADARLSAAGFD 239 (375)
T ss_pred EEEeccCCCCCHHHHHHHHHHHHhcCCCEEEeeeeecCCC---ChHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHcCCC
Confidence 9999999 9999999999999999999999887764 332 222111 11 22344555566677887
Q ss_pred hhccchhhh
Q 017200 345 YVASGPMVR 353 (375)
Q Consensus 345 ~~~sgp~vr 353 (375)
.....-++|
T Consensus 240 ~ye~s~fa~ 248 (375)
T PRK05628 240 WYEVSNWAR 248 (375)
T ss_pred eeeeccccC
Confidence 665544555
|
|
| >PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-13 Score=136.00 Aligned_cols=170 Identities=17% Similarity=0.225 Sum_probs=130.9
Q ss_pred eeeCCccCCCCcCCCCCCC----CCCCCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCC
Q 017200 133 MILGDTCTRGCRFCNVKTS----RAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN 208 (375)
Q Consensus 133 m~i~d~C~~~C~FC~v~~~----r~~~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~ 208 (375)
+.++++|+.+|.||..... .....++++|+.+.++.+.+.|++.|.||||+.--.++ +.++++.+++..+.
T Consensus 21 i~vT~~Cnl~C~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~-----l~~li~~i~~~~~~ 95 (331)
T PRK00164 21 ISVTDRCNFRCTYCMPEGYLPFLPKEELLSLEEIERLVRAFVALGVRKVRLTGGEPLLRKD-----LEDIIAALAALPGI 95 (331)
T ss_pred EEEcCCcCcCCCCCCCccCCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCCcCccC-----HHHHHHHHHhcCCC
Confidence 4579999999999987652 11224899999999999999999999999987322232 67788888765333
Q ss_pred cEEEeecCCCCCChHHHHHHHHcCcccccccccchH-HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCc-eEEEeEEEecC
Q 017200 209 MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGT-LTKTSIMLGCG 286 (375)
Q Consensus 209 i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl-~tkt~imvGlG 286 (375)
..|.+.+-... ..+.++.|+++|++.++..+++.+ +.|..++ ++.++++.++.++.+++. |+ .++..+++--|
T Consensus 96 ~~i~itTNG~l-l~~~~~~L~~agl~~i~ISlds~~~e~~~~i~-~~~~~~~vl~~i~~~~~~---g~~~v~i~~vv~~g 170 (331)
T PRK00164 96 RDLALTTNGYL-LARRAAALKDAGLDRVNVSLDSLDPERFKAIT-GRDRLDQVLAGIDAALAA---GLTPVKVNAVLMKG 170 (331)
T ss_pred ceEEEEcCchh-HHHHHHHHHHcCCCEEEEEeccCCHHHhccCC-CCCCHHHHHHHHHHHHHC---CCCcEEEEEEEECC
Confidence 45554443221 246788999999999999999865 8899998 678999999999999994 66 67777665449
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 287 ETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 287 ET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
++++|+.+.+++++++++++- +..|+
T Consensus 171 ~n~~ei~~l~~~~~~~gv~v~-~ie~~ 196 (331)
T PRK00164 171 VNDDEIPDLLEWAKDRGIQLR-FIELM 196 (331)
T ss_pred CCHHHHHHHHHHHHhCCCeEE-EEEee
Confidence 999999999999999998643 43565
|
|
| >TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-13 Score=142.71 Aligned_cols=208 Identities=17% Similarity=0.297 Sum_probs=148.2
Q ss_pred CccCCCCcCCCCCCCCCC-CCC---CcchHHHHHHHHHh-----cCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC
Q 017200 137 DTCTRGCRFCNVKTSRAP-PPP---DPDEPTNVAEAIAS-----WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (375)
Q Consensus 137 d~C~~~C~FC~v~~~r~~-~~l---d~eEi~~~a~al~~-----~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p 207 (375)
.-|+..|.||.+....+. ... ..+.++++++.+.. .+++.|.+.||+-..++ .+++.++++.|++.++
T Consensus 57 PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~I~fgGGtP~~l~---~~~l~~ll~~i~~~~~ 133 (455)
T TIGR00538 57 PFCHKACYFCGCNVIITRQKHKADPYLDALEKEIALVAPLFDGNRHVSQLHWGGGTPTYLS---PEQISRLMKLIRENFP 133 (455)
T ss_pred CCccCcCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCcCCCC---HHHHHHHHHHHHHhCC
Confidence 579999999999864311 121 24555555554432 37889999999765444 5678889999887643
Q ss_pred ---C--cEEEeecCCCCCChHHHHHHHHcCcccccccccchH-HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCce-EEEe
Q 017200 208 ---N--MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TKTS 280 (375)
Q Consensus 208 ---~--i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~-tkt~ 280 (375)
+ +.++ ..|+.. +.+.++.|+++|++.+..++|+.+ ++++.|+ |.++.++.++.++.+++ .|+. +..+
T Consensus 134 ~~~~~eitie-~np~~l-~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~-r~~~~~~~~~ai~~l~~---~G~~~v~~d 207 (455)
T TIGR00538 134 FNADAEISIE-IDPRYI-TKDVIDALRDEGFNRLSFGVQDFNKEVQQAVN-RIQPEEMIFELMNHARE---AGFTSINID 207 (455)
T ss_pred CCCCCeEEEE-eccCcC-CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhC-CCCCHHHHHHHHHHHHh---cCCCcEEEe
Confidence 2 3344 345433 789999999999999999999865 9999999 78999999999999999 5774 7899
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCC--CCcccc--CCHHH----HHHHHHHHHHhhhhhhccch
Q 017200 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRH--MPVSEY--ITPEA----FERYRALGMEMGFRYVASGP 350 (375)
Q Consensus 281 imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~--~~v~~~--v~pe~----~~~l~~~a~~~gf~~~~sgp 350 (375)
+|+|+ |||.+++.++++.+.+++++.+.+..+. .|.... ..+.+. ..+++ ++...+...+.||.....+-
T Consensus 208 li~GlPgqt~e~~~~tl~~~~~l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy~~~~~~~ 287 (455)
T TIGR00538 208 LIYGLPKQTKESFAKTLEKVAELNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGYQFIGMDH 287 (455)
T ss_pred EEeeCCCCCHHHHHHHHHHHHhcCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCCEEEeccc
Confidence 99999 9999999999999999999999997773 342111 111121 22333 23334444556776554444
Q ss_pred hhh
Q 017200 351 MVR 353 (375)
Q Consensus 351 ~vr 353 (375)
++|
T Consensus 288 fa~ 290 (455)
T TIGR00538 288 FAK 290 (455)
T ss_pred eeC
Confidence 444
|
This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein. |
| >PRK08446 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.1e-14 Score=139.10 Aligned_cols=204 Identities=11% Similarity=0.141 Sum_probs=146.7
Q ss_pred ccCCCCcCCCCCCCCCCCCC---CcchHHHHHHHHHh----cCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC-CC-
Q 017200 138 TCTRGCRFCNVKTSRAPPPP---DPDEPTNVAEAIAS----WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK-PN- 208 (375)
Q Consensus 138 ~C~~~C~FC~v~~~r~~~~l---d~eEi~~~a~al~~----~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~-p~- 208 (375)
-|+..|.||.+........+ ..+.++++++...+ .+++.|.+.||+-.-++ .+++.++++.|++.. ++
T Consensus 9 FC~~~C~yC~f~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGGTPs~l~---~~~l~~ll~~i~~~~~~~~ 85 (350)
T PRK08446 9 FCESKCGYCAFNSYENKHDLKKEYMQALCLDLKFELEQFTDEKIESVFIGGGTPSTVS---AKFYEPIFEIISPYLSKDC 85 (350)
T ss_pred CccCcCCCCCCcCcCCCcccHHHHHHHHHHHHHHHHhhccCCceeEEEECCCccccCC---HHHHHHHHHHHHHhcCCCc
Confidence 69999999999764211111 33444555443322 36889999998765555 466777777777643 23
Q ss_pred -cEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCce-EEEeEEEec
Q 017200 209 -MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLGC 285 (375)
Q Consensus 209 -i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~-tkt~imvGl 285 (375)
+.+++ .|+.. +.+.++.++++|++.+..++|+. +++++.++ |.++.++.++.++.+++ .|+. ++.++|+|+
T Consensus 86 eitiE~-nP~~~-~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lg-R~~~~~~~~~ai~~lr~---~g~~~v~iDli~Gl 159 (350)
T PRK08446 86 EITTEA-NPNSA-TKAWLKGMKNLGVNRISFGVQSFNEDKLKFLG-RIHSQKQIIKAIENAKK---AGFENISIDLIYDT 159 (350)
T ss_pred eEEEEe-CCCCC-CHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHHHHHHHHHHHHH---cCCCEEEEEeecCC
Confidence 34443 45533 78999999999999999999986 59999998 89999999999999999 4774 789999999
Q ss_pred -CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCCccc----cCCH-HHHHHHHHHHHHhhhhhhccchhhh
Q 017200 286 -GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSE----YITP-EAFERYRALGMEMGFRYVASGPMVR 353 (375)
Q Consensus 286 -GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~v~~----~v~p-e~~~~l~~~a~~~gf~~~~sgp~vr 353 (375)
|||.+++.++++.+.+++++.+.+..+. .| ++++.+ -... +.++...+...+.||......-++|
T Consensus 160 Pgqt~~~~~~~l~~~~~l~~~~is~y~L~~~~---gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy~~yeis~fa~ 231 (350)
T PRK08446 160 PLDNKKLLKEELKLAKELPINHLSAYSLTIEE---NTPFFEKNHKKKDDENLAKFFIEQLEELGFKQYEISNFGK 231 (350)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEeccceecC---CChhHHhhhcCCCHHHHHHHHHHHHHHCCCcEEEeehhhC
Confidence 9999999999999999999999987653 23 223221 1122 2345556666777886654444555
|
|
| >PRK09249 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.1e-14 Score=143.20 Aligned_cols=214 Identities=16% Similarity=0.247 Sum_probs=150.6
Q ss_pred EEEeeeCCccCCCCcCCCCCCCCCC-CCC---CcchHHHHHHHHH-----hcCCcEEEEEeeeCCCCCcccHHHHHHHHH
Q 017200 130 ATIMILGDTCTRGCRFCNVKTSRAP-PPP---DPDEPTNVAEAIA-----SWGLDYVVITSVDRDDLADQGSGHFAQTVR 200 (375)
Q Consensus 130 atfm~i~d~C~~~C~FC~v~~~r~~-~~l---d~eEi~~~a~al~-----~~G~~eIvLTsgdr~dl~d~G~~~~~~lir 200 (375)
.-|+-+ --|+..|.||.+...... ... ..+.++++++.++ ..+++.|.|.||+..-++ ...+.++++
T Consensus 51 ~LYvHI-PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gGGtPs~l~---~~~l~~ll~ 126 (453)
T PRK09249 51 SLYVHI-PFCRSLCYYCGCNKIITRDHEKADPYLDALEKEIALVAALLGPGRPVSQLHWGGGTPTFLS---PEQLRRLMA 126 (453)
T ss_pred EEEEEe-CCccccCCCCCCcccCCCCcchHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCcccccCC---HHHHHHHHH
Confidence 344433 579999999998764211 111 2244444444333 245789999998765454 467888898
Q ss_pred HHHHhCC---C--cEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC
Q 017200 201 KLKELKP---N--MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAG 274 (375)
Q Consensus 201 ~Ik~~~p---~--i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~G 274 (375)
.|++.++ + +.++ ..|+.. +.+.++.|+++|++.+..++|+. +++++.++ |.+++++.++.++.+++ .|
T Consensus 127 ~l~~~~~~~~~~e~tie-~np~~l-t~e~l~~l~~aG~~risiGvqS~~~~~L~~l~-r~~~~~~~~~ai~~l~~---~G 200 (453)
T PRK09249 127 LLREHFNFAPDAEISIE-IDPREL-DLEMLDALRELGFNRLSLGVQDFDPEVQKAVN-RIQPFEFTFALVEAARE---LG 200 (453)
T ss_pred HHHHhCCCCCCCEEEEE-ecCCcC-CHHHHHHHHHcCCCEEEECCCCCCHHHHHHhC-CCCCHHHHHHHHHHHHH---cC
Confidence 8887653 2 3444 345433 78999999999999999999976 49999999 89999999999999999 47
Q ss_pred c-eEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCC-CC-CCc--cccCCHHH----HHHHHHHHHHhhh
Q 017200 275 T-LTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSK-RH-MPV--SEYITPEA----FERYRALGMEMGF 343 (375)
Q Consensus 275 l-~tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~-~~-~~v--~~~v~pe~----~~~l~~~a~~~gf 343 (375)
+ .+..++|+|+ |||.+++.++++.+.+++++.+.+..+. .|.. +. ..+ ......+. ++...+...+.||
T Consensus 201 ~~~v~~dli~GlPgqt~e~~~~~l~~~~~l~~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy 280 (453)
T PRK09249 201 FTSINIDLIYGLPKQTPESFARTLEKVLELRPDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEAGY 280 (453)
T ss_pred CCcEEEEEEccCCCCCHHHHHHHHHHHHhcCCCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHCCC
Confidence 7 7899999999 9999999999999999999999997764 2321 01 111 11123333 3334555566788
Q ss_pred hhhccchhhh
Q 017200 344 RYVASGPMVR 353 (375)
Q Consensus 344 ~~~~sgp~vr 353 (375)
......-+.|
T Consensus 281 ~~ye~s~far 290 (453)
T PRK09249 281 QYIGMDHFAL 290 (453)
T ss_pred EEEeccceeC
Confidence 6665544444
|
|
| >TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.1e-14 Score=139.08 Aligned_cols=168 Identities=11% Similarity=0.203 Sum_probs=126.4
Q ss_pred ccCCCCcCCCCCCCCCC-CCC--CcchHHHHHHH-HHhcC---CcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC---C
Q 017200 138 TCTRGCRFCNVKTSRAP-PPP--DPDEPTNVAEA-IASWG---LDYVVITSVDRDDLADQGSGHFAQTVRKLKELK---P 207 (375)
Q Consensus 138 ~C~~~C~FC~v~~~r~~-~~l--d~eEi~~~a~a-l~~~G---~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~---p 207 (375)
-|+..|.||.+...... ... -.+.+.++++. +...| ++.|.+.||+-.-++ ...+.++++.|++.. +
T Consensus 9 FC~~~C~yC~f~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~v~~i~~GGGtPs~l~---~~~l~~ll~~i~~~~~~~~ 85 (360)
T TIGR00539 9 FCENKCGYCDFNSYENKSGPKEEYTQALCQDLKHALSQTDQEPLESIFIGGGTPNTLS---VEAFERLFESIYQHASLSD 85 (360)
T ss_pred CCcCcCCCCCCcccCcCccCHHHHHHHHHHHHHHHHHhcCCCcccEEEeCCCchhcCC---HHHHHHHHHHHHHhCCCCC
Confidence 59999999999864211 111 01222223322 23334 789999999755444 456777777777554 3
Q ss_pred CcEEEe-ecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCc-eEEEeEEEe
Q 017200 208 NMLIEA-LVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGT-LTKTSIMLG 284 (375)
Q Consensus 208 ~i~Ie~-l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl-~tkt~imvG 284 (375)
++.+.+ ..|+.. +.+.++.|+++|++.+..++|+. +++++.|. |.+++++.++.++.+++ .|+ .+..++|+|
T Consensus 86 ~~eitie~np~~l-t~e~l~~l~~~Gv~risiGvqS~~~~~l~~lg-R~~~~~~~~~ai~~l~~---~G~~~v~~dli~G 160 (360)
T TIGR00539 86 DCEITTEANPELI-TAEWCKGLKGAGINRLSLGVQSFRDDKLLFLG-RQHSAKNIAPAIETALK---SGIENISLDLMYG 160 (360)
T ss_pred CCEEEEEeCCCCC-CHHHHHHHHHcCCCEEEEecccCChHHHHHhC-CCCCHHHHHHHHHHHHH---cCCCeEEEeccCC
Confidence 333332 355544 78999999999999999999976 59999997 89999999999999999 577 489999999
Q ss_pred c-CCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 285 C-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 285 l-GET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
+ |||.+++.++++.+.+++++.+.+..+.
T Consensus 161 lPgqt~~~~~~~l~~~~~l~~~~is~y~l~ 190 (360)
T TIGR00539 161 LPLQTLNSLKEELKLAKELPINHLSAYALS 190 (360)
T ss_pred CCCCCHHHHHHHHHHHHccCCCEEEeecce
Confidence 9 9999999999999999999999986653
|
Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo. |
| >PRK09058 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.5e-14 Score=143.35 Aligned_cols=175 Identities=16% Similarity=0.269 Sum_probs=134.3
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCC-CCCC--CCcchHHHHHHHHHh------cCCcEEEEEeeeCCCCCcccHHHHHHHH
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSR-APPP--PDPDEPTNVAEAIAS------WGLDYVVITSVDRDDLADQGSGHFAQTV 199 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r-~~~~--ld~eEi~~~a~al~~------~G~~eIvLTsgdr~dl~d~G~~~~~~li 199 (375)
..-|+-+ --|...|.||.+.+.. .... .-.+.++++++...+ ..++.|.|-||+-..++ .+.+.+++
T Consensus 62 ~~lYiHI-PFC~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~GGGTPs~L~---~~~l~~ll 137 (449)
T PRK09058 62 RLLYIHI-PFCRTHCTFCGFFQNAWNPEAVARYTDALIRELAMEADSPLTQSAPIHAVYFGGGTPTALS---AEDLARLI 137 (449)
T ss_pred eEEEEEe-CCcCCcCCCCCCcCcCCchhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEECCCccccCC---HHHHHHHH
Confidence 4555544 4699999999987532 1111 234556666665543 23567777777655555 56788888
Q ss_pred HHHHHhCC-----CcEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Q 017200 200 RKLKELKP-----NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPA 273 (375)
Q Consensus 200 r~Ik~~~p-----~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~ 273 (375)
+.|++.+| .+.+|+-.-.+ +.+.++.++++|++.+..++|+. +++++.|+ |.++.++.++.++.+++ .
T Consensus 138 ~~i~~~~~l~~~~eitiE~~p~~~--t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lg-R~~~~~~~~~~i~~l~~---~ 211 (449)
T PRK09058 138 TALREYLPLAPDCEITLEGRINGF--DDEKADAALDAGANRFSIGVQSFNTQVRRRAG-RKDDREEVLARLEELVA---R 211 (449)
T ss_pred HHHHHhCCCCCCCEEEEEeCcCcC--CHHHHHHHHHcCCCEEEecCCcCCHHHHHHhC-CCCCHHHHHHHHHHHHh---C
Confidence 88888764 23455332234 78999999999999999999976 59999999 89999999999999999 4
Q ss_pred C-ceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 274 G-TLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 274 G-l~tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
| ..+..++|+|+ |||.+++.++++.+.+++++.|.+.++.
T Consensus 212 g~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~~~~is~y~L~ 253 (449)
T PRK09058 212 DRAAVVCDLIFGLPGQTPEIWQQDLAIVRDLGLDGVDLYALN 253 (449)
T ss_pred CCCcEEEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 5 57999999999 9999999999999999999999987763
|
|
| >PLN02951 Molybderin biosynthesis protein CNX2 | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.8e-13 Score=135.57 Aligned_cols=171 Identities=17% Similarity=0.282 Sum_probs=130.0
Q ss_pred eeeCCccCCCCcCCCCCCCC--CC--CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCC
Q 017200 133 MILGDTCTRGCRFCNVKTSR--AP--PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN 208 (375)
Q Consensus 133 m~i~d~C~~~C~FC~v~~~r--~~--~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~ 208 (375)
+.+++.|+.+|.||...... .+ ..++.+|+.+.++.+++.|++.|.||||+. -+. ..+.++++.+++. ++
T Consensus 62 isvT~~CNlrC~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~~Gv~~I~~tGGEP-llr----~dl~eli~~l~~~-~g 135 (373)
T PLN02951 62 ISLTERCNLRCQYCMPEEGVELTPKSHLLSQDEIVRLAGLFVAAGVDKIRLTGGEP-TLR----KDIEDICLQLSSL-KG 135 (373)
T ss_pred EEEcCCcCcCCCCCCCCcCCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCC-cch----hhHHHHHHHHHhc-CC
Confidence 45799999999999875321 11 238999999999999999999999999863 221 2377888888764 34
Q ss_pred c-EEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCc-eEEEeEEEec
Q 017200 209 M-LIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGT-LTKTSIMLGC 285 (375)
Q Consensus 209 i-~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl-~tkt~imvGl 285 (375)
+ .+.+.+-.+. ..+.+..|+++|++.+++.+++. ++.|+.++ ++..+++.++.++.+++. |+ .++..+.+--
T Consensus 136 i~~i~itTNG~l-L~~~~~~L~~aGld~VnISLDsl~~e~~~~it-r~~~~~~vl~~I~~a~~~---G~~~vkin~vv~~ 210 (373)
T PLN02951 136 LKTLAMTTNGIT-LSRKLPRLKEAGLTSLNISLDTLVPAKFEFLT-RRKGHDRVLESIDTAIEL---GYNPVKVNCVVMR 210 (373)
T ss_pred CceEEEeeCcch-HHHHHHHHHhCCCCeEEEeeccCCHHHHHHHh-cCCCHHHHHHHHHHHHHc---CCCcEEEEEEecC
Confidence 4 3444432221 34678999999999999999986 48899998 567789999999999984 65 4677766655
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeeecCCCC
Q 017200 286 GETPDQVVSTMEKVRAAGVDVMTFGQYMRP 315 (375)
Q Consensus 286 GET~ee~~etl~~Lrelgvd~v~i~qYl~P 315 (375)
|++++|+.+.++++++.++++ .+..||..
T Consensus 211 g~N~~Ei~~li~~a~~~gi~v-r~ie~mP~ 239 (373)
T PLN02951 211 GFNDDEICDFVELTRDKPINV-RFIEFMPF 239 (373)
T ss_pred CCCHHHHHHHHHHHHhCCCeE-EEEEcccC
Confidence 999999999999999999754 34466643
|
|
| >PRK08208 coproporphyrinogen III oxidase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.2e-13 Score=139.48 Aligned_cols=213 Identities=14% Similarity=0.188 Sum_probs=149.9
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-C---CCcchHHHHHHHHHhc----CCcEEEEEeeeCCCCCcccHHHHHHHHH
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAPP-P---PDPDEPTNVAEAIASW----GLDYVVITSVDRDDLADQGSGHFAQTVR 200 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~~-~---ld~eEi~~~a~al~~~----G~~eIvLTsgdr~dl~d~G~~~~~~lir 200 (375)
..-|+-+ --|+..|.||.+....+.. . ...+.++++++.+.+. .+..|.|.||+..-++ .+++.++++
T Consensus 40 ~~lYvHI-PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~i~~i~~GGGTPs~l~---~~~l~~Ll~ 115 (430)
T PRK08208 40 LSLYIHI-PFCEMRCGFCNLFTRTGADAEFIDSYLDALIRQAEQVAEALAPARFASFAVGGGTPTLLN---AAELEKLFD 115 (430)
T ss_pred eEEEEEe-CCccCcCCCCCCccccCCccchHHHHHHHHHHHHHHHHHHcCCCceeEEEEcCCccccCC---HHHHHHHHH
Confidence 5566655 5699999999987642111 1 1235555555554432 2567777666533333 567888888
Q ss_pred HHHHhCC----C--cEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Q 017200 201 KLKELKP----N--MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPA 273 (375)
Q Consensus 201 ~Ik~~~p----~--i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~ 273 (375)
.|++.++ . +.+++ .|+.. +.+.++.|+++|++.+..++|+. +++++.+. |+++.++.++.++.+++ .
T Consensus 116 ~i~~~~~~~~~~~eitiE~-~P~~l-t~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~-R~~~~~~~~~ai~~l~~---~ 189 (430)
T PRK08208 116 SVERVLGVDLGNIPKSVET-SPATT-TAEKLALLAARGVNRLSIGVQSFHDSELHALH-RPQKRADVHQALEWIRA---A 189 (430)
T ss_pred HHHHhCCCCCCCceEEEEe-CcCcC-CHHHHHHHHHcCCCEEEEecccCCHHHHHHhC-CCCCHHHHHHHHHHHHH---c
Confidence 8876653 2 23333 35543 78999999999999999999987 59999998 89999999999999999 4
Q ss_pred Cce-EEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCH--HH----HHHHHHHHHHhhhhh
Q 017200 274 GTL-TKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITP--EA----FERYRALGMEMGFRY 345 (375)
Q Consensus 274 Gl~-tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~p--e~----~~~l~~~a~~~gf~~ 345 (375)
|+. +..++|+|+ |+|.+++.++++.+.+++++.+.+..+. + ..++++.+...+ +. ++...+.-.+.||..
T Consensus 190 g~~~i~~dlI~GlP~qt~e~~~~~l~~~~~l~~~~is~y~L~-~-~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy~~ 267 (430)
T PRK08208 190 GFPILNIDLIYGIPGQTHASWMESLDQALVYRPEELFLYPLY-V-RPLTGLGRRARAWDDQRLSLYRLARDLLLEAGYTQ 267 (430)
T ss_pred CCCeEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEEcccc-c-cCCCccchhcCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 675 689999999 9999999999999999999999997653 3 123344333222 22 333344555668876
Q ss_pred hccchhhh
Q 017200 346 VASGPMVR 353 (375)
Q Consensus 346 ~~sgp~vr 353 (375)
....-++|
T Consensus 268 yei~~far 275 (430)
T PRK08208 268 TSMRMFRR 275 (430)
T ss_pred Eeecceec
Confidence 65555555
|
|
| >PRK13347 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.6e-13 Score=139.90 Aligned_cols=175 Identities=15% Similarity=0.212 Sum_probs=134.4
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCC-CCCCC---cchHHHHHHHHHh-----cCCcEEEEEeeeCCCCCcccHHHHHHHH
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRA-PPPPD---PDEPTNVAEAIAS-----WGLDYVVITSVDRDDLADQGSGHFAQTV 199 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~-~~~ld---~eEi~~~a~al~~-----~G~~eIvLTsgdr~dl~d~G~~~~~~li 199 (375)
..-|+-+ .-|+..|.||.+..... ..... .+.++++++...+ .++..|.|.||+-.-++ ..++.+++
T Consensus 51 ~~LYvHI-PfC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGGTPs~l~---~~~l~~ll 126 (453)
T PRK13347 51 VSLYLHV-PFCRSLCWFCGCNTIITQRDAPVEAYVAALIREIRLVAASLPQRRRVSQLHWGGGTPTILN---PDQFERLM 126 (453)
T ss_pred eEEEEEe-CCccccCCCCCCcCcCccccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCcccccCC---HHHHHHHH
Confidence 3445544 35999999999875421 11111 2344444443322 36789999999865555 46789999
Q ss_pred HHHHHhCC---C--cEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Q 017200 200 RKLKELKP---N--MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPA 273 (375)
Q Consensus 200 r~Ik~~~p---~--i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~ 273 (375)
+.|++.++ + +.++ ..|+.. +.+.++.|+++|++.+..++|+. +++++.++ |.++.++.++.++.+++ .
T Consensus 127 ~~i~~~~~~~~~~e~tie-~~p~~l-t~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~-R~~~~~~~~~ai~~lr~---~ 200 (453)
T PRK13347 127 AALRDAFDFAPEAEIAVE-IDPRTV-TAEMLQALAALGFNRASFGVQDFDPQVQKAIN-RIQPEEMVARAVELLRA---A 200 (453)
T ss_pred HHHHHhCCCCCCceEEEE-eccccC-CHHHHHHHHHcCCCEEEECCCCCCHHHHHHhC-CCCCHHHHHHHHHHHHh---c
Confidence 99988653 2 3344 345544 78999999999999999999976 59999999 89999999999999999 5
Q ss_pred Cce-EEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 274 GTL-TKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 274 Gl~-tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
|+. +..++|+|+ |||.+++.++++.+.+++++.|.+..|.
T Consensus 201 G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~p~~i~~y~l~ 242 (453)
T PRK13347 201 GFESINFDLIYGLPHQTVESFRETLDKVIALSPDRIAVFGYA 242 (453)
T ss_pred CCCcEEEeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 775 899999999 9999999999999999999999998774
|
|
| >PRK07379 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-13 Score=138.66 Aligned_cols=168 Identities=14% Similarity=0.170 Sum_probs=128.8
Q ss_pred CccCCCCcCCCCCCCC-CC-C-CCC-------cchHHHHHHHHHh--cCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHH
Q 017200 137 DTCTRGCRFCNVKTSR-AP-P-PPD-------PDEPTNVAEAIAS--WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKE 204 (375)
Q Consensus 137 d~C~~~C~FC~v~~~r-~~-~-~ld-------~eEi~~~a~al~~--~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~ 204 (375)
--|...|.||.+++.. +. . ..+ .+.+.++++.... .+++.|.|-||+-.-++ .+++.++++.|++
T Consensus 18 PFC~~~C~YC~f~~~~~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~i~~iy~GGGTps~l~---~~~l~~ll~~i~~ 94 (400)
T PRK07379 18 PFCRRRCFYCDFPISVVGDRTRGGTSGLIEEYVEVLCQEIAITPSFGQPLQTVFFGGGTPSLLS---VEQLERILTTLDQ 94 (400)
T ss_pred ccccCcCCCCCCccccccccccccccchHHHHHHHHHHHHHHhhccCCceeEEEECCCccccCC---HHHHHHHHHHHHH
Confidence 4699999999997531 11 0 111 1234444443222 25778888888755454 5778888988887
Q ss_pred hCC-----CcEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCce-E
Q 017200 205 LKP-----NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-T 277 (375)
Q Consensus 205 ~~p-----~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~-t 277 (375)
.++ .+.++ ..|+-. +.+.++.|+++|++.+..++|+. +++++.|+ |.++.++.++.++.+++ .|+. +
T Consensus 95 ~~~~~~~~eit~E-~~P~~l-t~e~l~~l~~~GvnrislGvQS~~d~~L~~l~-R~~~~~~~~~ai~~l~~---~G~~~v 168 (400)
T PRK07379 95 RFGIAPDAEISLE-IDPGTF-DLEQLQGYRSLGVNRVSLGVQAFQDELLALCG-RSHRVKDIFAAVDLIHQ---AGIENF 168 (400)
T ss_pred hCCCCCCCEEEEE-eCCCcC-CHHHHHHHHHCCCCEEEEEcccCCHHHHHHhC-CCCCHHHHHHHHHHHHH---cCCCeE
Confidence 653 23444 345433 78999999999999999999976 59999999 89999999999999999 5776 8
Q ss_pred EEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 278 KTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 278 kt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
+.++|+|+ |||.+++.++++.+.+++++.|.+..+.
T Consensus 169 ~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~ 205 (400)
T PRK07379 169 SLDLISGLPHQTLEDWQASLEAAIALNPTHLSCYDLV 205 (400)
T ss_pred EEEeecCCCCCCHHHHHHHHHHHHcCCCCEEEEecce
Confidence 99999999 9999999999999999999999987663
|
|
| >PRK09057 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.6e-13 Score=135.08 Aligned_cols=168 Identities=13% Similarity=0.172 Sum_probs=132.1
Q ss_pred CccCCCCcCCCCCCCCCCCC---CCcchHHHHHHHHHh----cCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC--
Q 017200 137 DTCTRGCRFCNVKTSRAPPP---PDPDEPTNVAEAIAS----WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-- 207 (375)
Q Consensus 137 d~C~~~C~FC~v~~~r~~~~---ld~eEi~~~a~al~~----~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p-- 207 (375)
--|...|.||.+.+...... .-.+.+.++++...+ ..++.|.|.||+..-++ .+.+.++++.|++.+|
T Consensus 12 PFC~~kC~yC~f~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l~---~~~L~~ll~~i~~~f~~~ 88 (380)
T PRK09057 12 PFCLAKCPYCDFNSHVRHAIDQARFAAAFLRELATEAARTGPRTLTSIFFGGGTPSLMQ---PETVAALLDAIARLWPVA 88 (380)
T ss_pred CCcCCcCCCCCCcccCcCcCCHHHHHHHHHHHHHHHHHHcCCCCcCeEEeCCCccccCC---HHHHHHHHHHHHHhCCCC
Confidence 46999999999986421111 122444555544332 35788999999866665 5678888999988653
Q ss_pred ---CcEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEE
Q 017200 208 ---NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIML 283 (375)
Q Consensus 208 ---~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imv 283 (375)
.+.+++ .|+-. +.+.++.|+++|++.+..++|+. +++++.|+ |.++.++..+.++.+++. +..++.++|+
T Consensus 89 ~~~eit~E~-~P~~i-~~e~L~~l~~~GvnrislGvQS~~d~vL~~l~-R~~~~~~~~~ai~~~~~~---~~~v~~dli~ 162 (380)
T PRK09057 89 DDIEITLEA-NPTSV-EAGRFRGYRAAGVNRVSLGVQALNDADLRFLG-RLHSVAEALAAIDLAREI---FPRVSFDLIY 162 (380)
T ss_pred CCccEEEEE-CcCcC-CHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHHHHHHHHHHHHHh---CccEEEEeec
Confidence 245554 35433 78999999999999999999976 59999999 899999999999999994 5679999999
Q ss_pred ec-CCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 284 GC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 284 Gl-GET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
|+ |+|.+++.++++.+.+++++.|.+.++.
T Consensus 163 GlPgqt~~~~~~~l~~~~~l~p~~is~y~L~ 193 (380)
T PRK09057 163 ARPGQTLAAWRAELKEALSLAADHLSLYQLT 193 (380)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCeEEeecce
Confidence 99 9999999999999999999999997664
|
|
| >KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-13 Score=136.13 Aligned_cols=191 Identities=19% Similarity=0.255 Sum_probs=144.4
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCC-CcccHHHHHHHHHHHHHhC
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDL-ADQGSGHFAQTVRKLKELK 206 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~~-~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl-~d~G~~~~~~lir~Ik~~~ 206 (375)
-.-++.+.-+|-+.|.||--+..|+-. +.++++++..++..-+.|+.+|-+|+-|...+ .|-|. .+..++.++.+..
T Consensus 187 lieIi~intgclgaCtyckTkharg~l~sy~~dslvervrt~f~egv~eIwltsedTgaygrdig~-slp~ll~klv~~i 265 (547)
T KOG4355|consen 187 LIEIISINTGCLGACTYCKTKHARGLLASYPKDSLVERVRTSFEEGVCEIWLTSEDTGAYGRDIGK-SLPKLLWKLVEVI 265 (547)
T ss_pred ceEEEEeccccccccccccccccccccccCCHHHHHHHHHHHHhcCcEEEEecccccchhhhhhhh-hhHHHHHHHHHhc
Confidence 445667889999999999998887643 58999999999999999999999999886555 23332 3566677776666
Q ss_pred CC---cEEEeecCCCCCChHHHHHHHHc--Ccccccc--c-c-cchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceE
Q 017200 207 PN---MLIEALVPDFRGNNGCVREVAKS--GLNVFAH--N-I-ETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLT 277 (375)
Q Consensus 207 p~---i~Ie~l~pd~~g~~e~l~~L~~a--Gldv~~h--n-l-Etv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~t 277 (375)
|+ +++..-.|.+ -.|.+++++.- -+.+|.. . + ..+|.++-.|+ |.|...++-.+...+.+..|. +.+
T Consensus 266 Pe~cmlr~gmTnpP~--ilehl~e~a~vlrhp~vYsflhvpvqsgsdsvl~emk-reyc~~dfk~Vvd~LterVPg-i~I 341 (547)
T KOG4355|consen 266 PESCMLRAGMTNPPY--ILEHLEEAAFVLRHPRVYSFLHVPVQSGSDSVLTEMK-REYCNFDFKIVVDFLTERVPG-ITI 341 (547)
T ss_pred chhhhhhhcCCCCch--HHHHHHHHHHHhcCCeEEEEEecccccCchhHHHHHH-HHHhhhhHHHHHHHHHhhCCC-cEE
Confidence 62 3444444444 23444444321 2333332 2 3 46789999999 889889999999999999985 999
Q ss_pred EEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCCccc
Q 017200 278 KTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSE 324 (375)
Q Consensus 278 kt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~v~~ 324 (375)
.|+||.|| |||+|||.++|+.+++..+-.+.|.||+ ||++...++..
T Consensus 342 ATDiIcgFPtETdeDFeeTmeLv~kYKFPslfInQfyPRpGTPAAkmkk 390 (547)
T KOG4355|consen 342 ATDIICGFPTETDEDFEETMELVRKYKFPSLFINQFYPRPGTPAAKMKK 390 (547)
T ss_pred eeeeeecCCCCchHHHHHHHHHHHHccCchhhhhhcCCCCCChHHhhhc
Confidence 99999999 9999999999999999999999999997 66554444443
|
|
| >PRK08898 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-12 Score=132.65 Aligned_cols=168 Identities=16% Similarity=0.195 Sum_probs=131.2
Q ss_pred CccCCCCcCCCCCCCCCC-C-CC----CcchHHHHHHHHHh----cCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC
Q 017200 137 DTCTRGCRFCNVKTSRAP-P-PP----DPDEPTNVAEAIAS----WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK 206 (375)
Q Consensus 137 d~C~~~C~FC~v~~~r~~-~-~l----d~eEi~~~a~al~~----~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~ 206 (375)
--|...|.||.+.+.... . .. =.+.+.++++.... ..++-|.|.||+..-++ .+.+.++++.|++.+
T Consensus 27 PFC~~~C~yC~f~~~~~~~~~~~~~~~Y~~~l~~ei~~~~~~~~~~~i~siy~GGGTPs~L~---~~~L~~ll~~i~~~~ 103 (394)
T PRK08898 27 PWCVRKCPYCDFNSHEWKDGGAIPEAAYLDALRADLEQALPLVWGRQVHTVFIGGGTPSLLS---AAGLDRLLSDVRALL 103 (394)
T ss_pred CCccCcCCCCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhccCCceeEEEECCCCcCCCC---HHHHHHHHHHHHHhC
Confidence 469999999999864211 1 11 12445555544322 23678888888876666 577889999998877
Q ss_pred CC-----cEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017200 207 PN-----MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (375)
Q Consensus 207 p~-----i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~ 280 (375)
|. +.+++ .|+.. +.+.++.|+++|++.+..++|+. +++++.|+ |.++.++..++++.+++. +..+..+
T Consensus 104 ~~~~~~eit~E~-~p~~~-~~e~L~~l~~~GvnrisiGvQS~~~~~L~~l~-R~~~~~~~~~~i~~~~~~---~~~v~~d 177 (394)
T PRK08898 104 PLDPDAEITLEA-NPGTF-EAEKFAQFRASGVNRLSIGIQSFNDAHLKALG-RIHDGAEARAAIEIAAKH---FDNFNLD 177 (394)
T ss_pred CCCCCCeEEEEE-CCCCC-CHHHHHHHHHcCCCeEEEecccCCHHHHHHhC-CCCCHHHHHHHHHHHHHh---CCceEEE
Confidence 42 44454 45433 68999999999999999999975 59999998 899999999999999984 3568999
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 281 imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
+|+|+ |+|.+++.++++.+.+++++.|.+.++.
T Consensus 178 lI~GlPgqt~~~~~~~l~~~~~l~p~~is~y~l~ 211 (394)
T PRK08898 178 LMYALPGQTLDEALADVETALAFGPPHLSLYHLT 211 (394)
T ss_pred EEcCCCCCCHHHHHHHHHHHHhcCCCEEEEeeeE
Confidence 99999 9999999999999999999999987774
|
|
| >TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.8e-13 Score=129.72 Aligned_cols=169 Identities=16% Similarity=0.301 Sum_probs=131.1
Q ss_pred EeeeCCccCCCCcCCCCCCCCCC--CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCc
Q 017200 132 IMILGDTCTRGCRFCNVKTSRAP--PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM 209 (375)
Q Consensus 132 fm~i~d~C~~~C~FC~v~~~r~~--~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i 209 (375)
.+.+++.|+.+|.||........ ..++.+|+.+.++.+...|++.|.||||+.--.++ +.++++.+++. ++
T Consensus 13 ~i~vT~~CNl~C~yC~~~~~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~-----l~~iv~~l~~~--g~ 85 (302)
T TIGR02668 13 RISVTDRCNLSCFYCHMEGEDRSGGNELSPEEIERIVRVASEFGVRKVKITGGEPLLRKD-----LIEIIRRIKDY--GI 85 (302)
T ss_pred EEEEcccccCCCCCCCccccCCCccCcCCHHHHHHHHHHHHHcCCCEEEEECcccccccC-----HHHHHHHHHhC--CC
Confidence 45679999999999988643222 24899999999999999999999999997322222 67788888764 23
Q ss_pred -EEEeecCCCCCChHHHHHHHHcCcccccccccchH-HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCce-EEEeEEEecC
Q 017200 210 -LIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLGCG 286 (375)
Q Consensus 210 -~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~-tkt~imvGlG 286 (375)
.+.+.+-... ..+.++.++++|++.++..+++.+ +.|+.++ ++.++++.++.++.+++ .|+. ++..+++--|
T Consensus 86 ~~v~i~TNG~l-l~~~~~~l~~~g~~~v~iSld~~~~~~~~~i~-~~~~~~~vl~~i~~~~~---~G~~~v~i~~v~~~g 160 (302)
T TIGR02668 86 KDVSMTTNGIL-LEKLAKKLKEAGLDRVNVSLDTLDPEKYKKIT-GRGALDRVIEGIESAVD---AGLTPVKLNMVVLKG 160 (302)
T ss_pred ceEEEEcCchH-HHHHHHHHHHCCCCEEEEEecCCCHHHhhhcc-CCCcHHHHHHHHHHHHH---cCCCcEEEEEEEeCC
Confidence 4554442221 356788999999999999999864 8999998 57899999999999999 4664 7777666448
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 287 ETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 287 ET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
++++++.+.+++++++++++ .+..|+
T Consensus 161 ~n~~ei~~~~~~~~~~g~~~-~~ie~~ 186 (302)
T TIGR02668 161 INDNEIPDMVEFAAEGGAIL-QLIELM 186 (302)
T ss_pred CCHHHHHHHHHHHHhcCCEE-EEEEEe
Confidence 99999999999999999974 444565
|
This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666). |
| >TIGR01210 conserved hypothetical protein TIGR01210 | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.5e-12 Score=126.80 Aligned_cols=197 Identities=17% Similarity=0.262 Sum_probs=140.1
Q ss_pred cEEEEeeeCCccCC----CCcCCCCCCCCCCCCCCcchHHHHHHHHHhc-CCcE-----EEEEee---eCCCCCcccHHH
Q 017200 128 ATATIMILGDTCTR----GCRFCNVKTSRAPPPPDPDEPTNVAEAIASW-GLDY-----VVITSV---DRDDLADQGSGH 194 (375)
Q Consensus 128 ~tatfm~i~d~C~~----~C~FC~v~~~r~~~~ld~eEi~~~a~al~~~-G~~e-----IvLTsg---dr~dl~d~G~~~ 194 (375)
.+.+++..+.||+. +|.||++.... ....+++++.+.++.+.+. +.++ -++|+| |...++ .+.
T Consensus 14 ~~~~~i~~srGC~~~~~g~C~FC~~~~~~-~r~~s~e~i~~~i~~~~~~~~~~~~~~~ikif~sgsf~D~~~~~---~~~ 89 (313)
T TIGR01210 14 KSLTIILRTRGCYWAREGGCYMCGYLADS-SPEVTEENLINQFDEAIEKYKEKIKDFVIKIFTSGSFLDDREVP---KET 89 (313)
T ss_pred ceEEEEEeCCCCCCCCCCcCccCCCCCCC-CCCCChhHHHHHHHHHHHHhhcccccEEEEEecCCCcCCcCcCC---HHH
Confidence 35666777999999 69999876432 1236888888888776643 4332 236666 322333 456
Q ss_pred HHHHHHHHHHhCC--CcEEEeecCCCCCChHHHHHHHHcCcc-cccccccch-HHHHH-HhcCCCCCHHHHHHHHHHHHH
Q 017200 195 FAQTVRKLKELKP--NMLIEALVPDFRGNNGCVREVAKSGLN-VFAHNIETV-EELQS-AVRDHRANFKQSLDVLMMAKD 269 (375)
Q Consensus 195 ~~~lir~Ik~~~p--~i~Ie~l~pd~~g~~e~l~~L~~aGld-v~~hnlEtv-~rl~~-~mr~r~~s~~~~l~vl~~ak~ 269 (375)
+.++++.|++... .+.++ ..|+.. +.+.|+.|+++|++ .+..++|+. +++++ .|+ ++++.++..+.++.+++
T Consensus 90 ~~~i~~~l~~~~~~~~i~~e-srpd~i-~~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~in-Kg~t~~~~~~ai~~~~~ 166 (313)
T TIGR01210 90 RNYIFEKIAQRDNLKEVVVE-SRPEFI-DEEKLEELRKIGVNVEVAVGLETANDRIREKSIN-KGSTFEDFIRAAELARK 166 (313)
T ss_pred HHHHHHHHHhcCCcceEEEE-eCCCcC-CHHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhC-CCCCHHHHHHHHHHHHH
Confidence 7778888876321 23444 356655 78999999999998 699999985 59995 799 89999999999999999
Q ss_pred hCCCCceEEEeEEEec-CC----CHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCCcc------ccCCH---HHHHHH
Q 017200 270 YVPAGTLTKTSIMLGC-GE----TPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVS------EYITP---EAFERY 334 (375)
Q Consensus 270 ~~p~Gl~tkt~imvGl-GE----T~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~v~------~~v~p---e~~~~l 334 (375)
.|+.++.++|+|+ |+ +.+++.++++.+.+++ +.+.+.+.. +| ++++. .|..| +..+.|
T Consensus 167 ---~Gi~v~~~~i~G~P~~se~ea~ed~~~ti~~~~~l~-~~vs~~~l~v~~---gT~l~~~~~~G~~~pp~lws~~e~l 239 (313)
T TIGR01210 167 ---YGAGVKAYLLFKPPFLSEKEAIADMISSIRKCIPVT-DTVSINPTNVQK---GTLVEFLWNRGLYRPPWLWSVAEVL 239 (313)
T ss_pred ---cCCcEEEEEEecCCCCChhhhHHHHHHHHHHHHhcC-CcEEEECCEEeC---CCHHHHHHHcCCCCCCCHHHHHHHH
Confidence 5899999999999 64 5567778999999998 888875432 33 23322 23345 566667
Q ss_pred HHHH
Q 017200 335 RALG 338 (375)
Q Consensus 335 ~~~a 338 (375)
++..
T Consensus 240 ~e~~ 243 (313)
T TIGR01210 240 KEAK 243 (313)
T ss_pred HHHH
Confidence 6664
|
This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes. |
| >PRK06294 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.7e-13 Score=134.01 Aligned_cols=217 Identities=12% Similarity=0.199 Sum_probs=146.1
Q ss_pred EEEeeeCCccCCCCcCCCCCCCCC-CCCCC--cchHHHH-HHHHHh----cCCcEEEEEeeeCCCCCcccHHHHHHHHHH
Q 017200 130 ATIMILGDTCTRGCRFCNVKTSRA-PPPPD--PDEPTNV-AEAIAS----WGLDYVVITSVDRDDLADQGSGHFAQTVRK 201 (375)
Q Consensus 130 atfm~i~d~C~~~C~FC~v~~~r~-~~~ld--~eEi~~~-a~al~~----~G~~eIvLTsgdr~dl~d~G~~~~~~lir~ 201 (375)
.-|+-+ --|...|.||.+..... ....+ .+.++++ .+.... ..++.|.+.||+..-++ .+++.++++.
T Consensus 8 ~lYiHI-PFC~~~C~yC~f~~~~~~~~~~~~y~~~l~~E~~~~~~~~~~~~~i~~iy~GGGTPs~l~---~~~l~~ll~~ 83 (370)
T PRK06294 8 ALYIHI-PFCTKKCHYCSFYTIPYKEESVSLYCNAVLKEGLKKLAPLRCSHFIDTVFFGGGTPSLVP---PALIQDILKT 83 (370)
T ss_pred EEEEEe-CCccCcCCCCcCcccCCCccCHHHHHHHHHHHHHHHhhhhccCCceeEEEECCCccccCC---HHHHHHHHHH
Confidence 344433 47999999999876421 11111 1222222 222221 24677888888765555 4677888888
Q ss_pred HHHh-CCCcEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCce-EE
Q 017200 202 LKEL-KPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TK 278 (375)
Q Consensus 202 Ik~~-~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~-tk 278 (375)
|++. ...+.+++ .|+.. +.+.++.++++|++.+..++|+. +++++.+. |.++.++.++.++.+++ .|+. ++
T Consensus 84 i~~~~~~eit~E~-~P~~~-~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~-R~~~~~~~~~ai~~~~~---~g~~~v~ 157 (370)
T PRK06294 84 LEAPHATEITLEA-NPENL-SESYIRALALTGINRISIGVQTFDDPLLKLLG-RTHSSSKAIDAVQECSE---HGFSNLS 157 (370)
T ss_pred HHhCCCCeEEEEe-CCCCC-CHHHHHHHHHCCCCEEEEccccCCHHHHHHcC-CCCCHHHHHHHHHHHHH---cCCCeEE
Confidence 8653 12455553 45433 78999999999999999999976 59999999 89999999999999999 5774 89
Q ss_pred EeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCC-c----cccCCHH----HHHHHHHHHHHhhhhhhc
Q 017200 279 TSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMP-V----SEYITPE----AFERYRALGMEMGFRYVA 347 (375)
Q Consensus 279 t~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~-v----~~~v~pe----~~~~l~~~a~~~gf~~~~ 347 (375)
.++|+|+ |||.+++.++++.+.+++++.|.+..+. .|.+.-.+ . ......+ .++...+.-.+.||....
T Consensus 158 ~Dli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ye 237 (370)
T PRK06294 158 IDLIYGLPTQSLSDFIVDLHQAITLPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGFTRYE 237 (370)
T ss_pred EEeecCCCCCCHHHHHHHHHHHHccCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCCeee
Confidence 9999999 9999999999999999999999987663 34321100 0 0011222 233344555667886665
Q ss_pred cchhhhhhc
Q 017200 348 SGPMVRSSY 356 (375)
Q Consensus 348 sgp~vrssy 356 (375)
-.-++|..|
T Consensus 238 is~fa~~~~ 246 (370)
T PRK06294 238 LASYAKPQA 246 (370)
T ss_pred eeeeeCCCc
Confidence 444555433
|
|
| >PRK06582 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-12 Score=131.92 Aligned_cols=175 Identities=10% Similarity=0.153 Sum_probs=131.5
Q ss_pred EEEeeeCCccCCCCcCCCCCCCCCCCCCCc----chHHHHHHHHH----hcCCcEEEEEeeeCCCCCcccHHHHHHHHHH
Q 017200 130 ATIMILGDTCTRGCRFCNVKTSRAPPPPDP----DEPTNVAEAIA----SWGLDYVVITSVDRDDLADQGSGHFAQTVRK 201 (375)
Q Consensus 130 atfm~i~d~C~~~C~FC~v~~~r~~~~ld~----eEi~~~a~al~----~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~ 201 (375)
.-|+-+ --|...|.||.+.+..... ... +-+.++++... ...++.|.|.||+..-++ .+.+.++++.
T Consensus 13 ~lYiHi-PFC~~~C~yC~f~~~~~~~-~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l~---~~~l~~ll~~ 87 (390)
T PRK06582 13 SIYIHW-PFCLSKCPYCDFNSHVAST-IDHNQWLKSYEKEIEYFKDIIQNKYIKSIFFGGGTPSLMN---PVIVEGIINK 87 (390)
T ss_pred EEEEEe-CCCcCcCCCCCCeeccCCC-CCHHHHHHHHHHHHHHHHHHccCCceeEEEECCCccccCC---HHHHHHHHHH
Confidence 344433 5899999999997642111 111 12222333222 234788999998765555 4667788888
Q ss_pred HHHhC--C---CcEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCc
Q 017200 202 LKELK--P---NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGT 275 (375)
Q Consensus 202 Ik~~~--p---~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl 275 (375)
|++.+ + .+.+++ .|+.. +.+.++.|+++|++.+..++|+. +++++.+. |.++.++.++.++.+++. +.
T Consensus 88 i~~~~~~~~~~eitiE~-nP~~~-~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~lg-R~h~~~~~~~ai~~~~~~---~~ 161 (390)
T PRK06582 88 ISNLAIIDNQTEITLET-NPTSF-ETEKFKAFKLAGINRVSIGVQSLKEDDLKKLG-RTHDCMQAIKTIEAANTI---FP 161 (390)
T ss_pred HHHhCCCCCCCEEEEEe-CCCcC-CHHHHHHHHHCCCCEEEEECCcCCHHHHHHcC-CCCCHHHHHHHHHHHHHh---CC
Confidence 87753 2 355554 45433 78999999999999999999976 59999999 899999999999999984 45
Q ss_pred eEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CC
Q 017200 276 LTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RP 315 (375)
Q Consensus 276 ~tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P 315 (375)
.++.++|+|+ |+|.+++.++++.+.+++++.|.+.++. .|
T Consensus 162 ~v~~DlI~GlPgqt~e~~~~~l~~~~~l~p~his~y~L~i~~ 203 (390)
T PRK06582 162 RVSFDLIYARSGQTLKDWQEELKQAMQLATSHISLYQLTIEK 203 (390)
T ss_pred cEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEEecCEEcc
Confidence 7999999999 9999999999999999999999997664 44
|
|
| >PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-11 Score=123.10 Aligned_cols=171 Identities=15% Similarity=0.204 Sum_probs=132.5
Q ss_pred EEEEeeeCCccCCCCcCCCCCCC--CCCCCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC
Q 017200 129 TATIMILGDTCTRGCRFCNVKTS--RAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK 206 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~--r~~~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~ 206 (375)
...++.+++.|+.+|.||..... +....++.+++.+.++.+.+.|+..|.||||+---.+ ++.++++.+++.
T Consensus 16 ~~l~i~iT~~CNl~C~~C~~~~~~~~~~~~~~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~-----~~~~il~~~~~~- 89 (378)
T PRK05301 16 LWLLAELTYRCPLQCPYCSNPLDLARHGAELSTEEWIRVLREARALGALQLHFSGGEPLLRK-----DLEELVAHAREL- 89 (378)
T ss_pred eEEEEEecCccCcCCCCCCCccccccccCCCCHHHHHHHHHHHHHcCCcEEEEECCccCCch-----hHHHHHHHHHHc-
Confidence 55556789999999999987542 2223589999999999999999999999998742222 267888888764
Q ss_pred CCcEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec
Q 017200 207 PNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 285 (375)
Q Consensus 207 p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl 285 (375)
++.+.+.+-...-+.+.++.|++.|++.+...+++. ++.+..++..+.+|++.++.++.+++ .|+.+...+++ .
T Consensus 90 -g~~~~i~TNG~ll~~~~~~~L~~~g~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~---~g~~v~i~~vv-~ 164 (378)
T PRK05301 90 -GLYTNLITSGVGLTEARLAALKDAGLDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKA---HGYPLTLNAVI-H 164 (378)
T ss_pred -CCcEEEECCCccCCHHHHHHHHHcCCCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHH---CCCceEEEEEe-e
Confidence 355554443222267899999999999999999986 58999998544689999999999998 46655444332 3
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 286 GETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 286 GET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
..+.+++.+.+++++++|++.+.+.
T Consensus 165 ~~N~~~i~~~~~~~~~lgv~~i~~~ 189 (378)
T PRK05301 165 RHNIDQIPRIIELAVELGADRLELA 189 (378)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 7899999999999999999998874
|
|
| >PRK08629 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.9e-12 Score=127.94 Aligned_cols=178 Identities=10% Similarity=0.145 Sum_probs=126.0
Q ss_pred EEEeeeCCccCCCCcCCCCCCC-CCCCC--CCcchHHHHHHHHHhcCC--cEEEEEeeeCCCCCcccHHHHHHHHHHHHH
Q 017200 130 ATIMILGDTCTRGCRFCNVKTS-RAPPP--PDPDEPTNVAEAIASWGL--DYVVITSVDRDDLADQGSGHFAQTVRKLKE 204 (375)
Q Consensus 130 atfm~i~d~C~~~C~FC~v~~~-r~~~~--ld~eEi~~~a~al~~~G~--~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~ 204 (375)
.-|+-+ --|...|.||.+.+. ..... .-.+.+.++++.+++.|. ..|.+-||+ +.+. .+.+.++++.|++
T Consensus 54 ~LYvHI-PFC~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~siy~GGGT-Ps~l---~~~L~~ll~~i~~ 128 (433)
T PRK08629 54 MLYAHV-PFCHTLCPYCSFHRFYFKEDKARAYFISLRKEMEMVKELGYDFESMYVGGGT-TTIL---EDELAKTLELAKK 128 (433)
T ss_pred EEEEEe-CCccCcCCCCCCcCcCCCcchHHHHHHHHHHHHHHHHhcCCceEEEEECCCc-cccC---HHHHHHHHHHHHH
Confidence 444433 369999999999864 21111 124667777776666553 455555554 3332 3567888888887
Q ss_pred hCC--CcEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE
Q 017200 205 LKP--NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI 281 (375)
Q Consensus 205 ~~p--~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~i 281 (375)
.++ .+.++ ..|+.. +.+.++.++++ ++.+..++|+. +++++.|+ |.+++.+..++++.+++....+..++.++
T Consensus 129 ~f~i~eis~E-~~P~~l-t~e~L~~l~~~-vnrlsiGVQS~~d~vLk~~g-R~h~~~~~~~~~~~l~~~~~~~~~v~~Dl 204 (433)
T PRK08629 129 LFSIKEVSCE-SDPNHL-DPPKLKQLKGL-IDRLSIGVQSFNDDILKMVD-RYEKFGSGQETFEKIMKAKGLFPIINVDL 204 (433)
T ss_pred hCCCceEEEE-eCcccC-CHHHHHHHHHh-CCeEEEecCcCCHHHHHHcC-CCCChhHHHHHHHHHHHHhccCCeEEEEE
Confidence 764 24444 356544 78999999999 99999999976 59999998 88877666555544444321223579999
Q ss_pred EEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCC
Q 017200 282 MLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPS 316 (375)
Q Consensus 282 mvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~ 316 (375)
|+|| |||.+++.++++.+.+++++.|++.+++ .|.
T Consensus 205 I~GlPgqT~e~~~~~l~~~~~l~p~~is~y~L~~~~~ 241 (433)
T PRK08629 205 IFNFPGQTDEVLQHDLDIAKRLDPRQITTYPLMKSHQ 241 (433)
T ss_pred EccCCCCCHHHHHHHHHHHHhCCCCEEEEccceeccC
Confidence 9999 9999999999999999999999998775 453
|
|
| >COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.3e-12 Score=123.62 Aligned_cols=174 Identities=17% Similarity=0.260 Sum_probs=133.8
Q ss_pred EEEEe--eeCCccCCCCcCCCCCC-C-CCCC--CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHH
Q 017200 129 TATIM--ILGDTCTRGCRFCNVKT-S-RAPP--PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKL 202 (375)
Q Consensus 129 tatfm--~i~d~C~~~C~FC~v~~-~-r~~~--~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~I 202 (375)
..+++ .++|.|+.+|.||...- . -.|. -|++||+.+.+++..+.|++.|.||||.. -+. ..+.++|+.|
T Consensus 9 ~~~~LRiSvTdrCNfrC~YCm~eg~~~~~~~~~~Ls~eei~~~~~~~~~~Gv~kvRlTGGEP-llR----~dl~eIi~~l 83 (322)
T COG2896 9 PVRYLRISVTDRCNFRCTYCMPEGPLAFLPKEELLSLEEIRRLVRAFAELGVEKVRLTGGEP-LLR----KDLDEIIARL 83 (322)
T ss_pred EeceEEEEEecCcCCcccccCCCCCcccCcccccCCHHHHHHHHHHHHHcCcceEEEeCCCc-hhh----cCHHHHHHHH
Confidence 56665 46999999999999876 2 1232 48999999999999999999999999962 121 1266778888
Q ss_pred HHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccchH-HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCc-eEEEe
Q 017200 203 KELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGT-LTKTS 280 (375)
Q Consensus 203 k~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl-~tkt~ 280 (375)
++. .--.|..-+-.+. -....+.|++||++.++..+++.+ +.|.+|. +...+++.++-++.|.+ .|+ ++|-+
T Consensus 84 ~~~-~~~~islTTNG~~-L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT-~~~~~~~Vl~GI~~A~~---~Gl~pVKlN 157 (322)
T COG2896 84 ARL-GIRDLSLTTNGVL-LARRAADLKEAGLDRVNVSLDSLDPEKFRKIT-GRDRLDRVLEGIDAAVE---AGLTPVKLN 157 (322)
T ss_pred hhc-ccceEEEecchhh-HHHHHHHHHHcCCcEEEeecccCCHHHHHHHh-CCCcHHHHHHHHHHHHH---cCCCceEEE
Confidence 764 1112332221111 367889999999999999999876 9999999 56669999999999999 577 48888
Q ss_pred EEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCC
Q 017200 281 IMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMR 314 (375)
Q Consensus 281 imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~ 314 (375)
+.|==|-+++|+.+.+++.++.|.+ +.|--||.
T Consensus 158 ~Vv~kgvNd~ei~~l~e~~~~~~~~-lrfIE~m~ 190 (322)
T COG2896 158 TVLMKGVNDDEIEDLLEFAKERGAQ-LRFIELMP 190 (322)
T ss_pred EEEecCCCHHHHHHHHHHHhhcCCc-eEEEEEee
Confidence 8876689999999999999999984 33445663
|
|
| >COG1032 Fe-S oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.3e-12 Score=131.32 Aligned_cols=182 Identities=20% Similarity=0.263 Sum_probs=128.1
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCccc--HHHHHHHHH-HHHHh
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQG--SGHFAQTVR-KLKEL 205 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G--~~~~~~lir-~Ik~~ 205 (375)
....+.++.||+++|+||.+.........+++.+++.++.+.+.|++.+.+..++.-.+...+ .....+++. .+.+.
T Consensus 198 ~~~~ve~~RGCp~~C~FC~~~~~~~~r~~~~~~v~~ei~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~~~~~ 277 (490)
T COG1032 198 RAFSVETSRGCPRGCRFCSITKHFKYRRRRPERVVEEIKELIEEGGKRVVFFVDDIFLYGSPALNDEKRFELLSLELIER 277 (490)
T ss_pred eEEEEEeccCCCCCCCCCCCcccccccCCCHHHHHHHHHHHHHHhhhcCcccccceeecCCccccchhhcccchHHHHHH
Confidence 466677899999999999998642123577888888888888888877664444322111100 122233332 23322
Q ss_pred C-C-CcEEEe----ecCCCCCChHHHHHHHHcCcccccccccc-hHHHHHHhcCCCCCHHHHHH-HHHHHHHhCCCCceE
Q 017200 206 K-P-NMLIEA----LVPDFRGNNGCVREVAKSGLNVFAHNIET-VEELQSAVRDHRANFKQSLD-VLMMAKDYVPAGTLT 277 (375)
Q Consensus 206 ~-p-~i~Ie~----l~pd~~g~~e~l~~L~~aGldv~~hnlEt-v~rl~~~mr~r~~s~~~~l~-vl~~ak~~~p~Gl~t 277 (375)
. + .-.+.. +.+|...+.+.++.+..+|...+..++|+ ++++++.++ ++.+.++.++ .++.+++ .|+.+
T Consensus 278 ~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~g~~~~~iG~Esgs~~~l~~~~-k~~~~~~~~~~a~~~~~~---~~~~~ 353 (490)
T COG1032 278 GLRKGCRVHISAPSLRADTVTDEELLKLLREAGLRRVYIGIESGSEELLKKIN-KGITTEEVLEEAVKIAKE---HGLRV 353 (490)
T ss_pred hcccCceeeeeccccCchhcCHHHHHHHHhhCCCcceEEeccCCCHHHHHHHh-CCCChHHHHHHHHHHHHh---CCcee
Confidence 2 1 112222 23344323778888899999999999996 569999999 8999999995 8999888 57889
Q ss_pred EEeEEEec-CCCHHHHHHH---HHHHHHcCCc-EEeeecCCCC
Q 017200 278 KTSIMLGC-GETPDQVVST---MEKVRAAGVD-VMTFGQYMRP 315 (375)
Q Consensus 278 kt~imvGl-GET~ee~~et---l~~Lrelgvd-~v~i~qYl~P 315 (375)
+.++|+|+ |||++++.++ ++.+++.+.. .+.+ .++.|
T Consensus 354 ~~~~i~G~pget~ed~~~t~~~~~~~~~~~~~~~~~~-~~~~p 395 (490)
T COG1032 354 KLYFIVGLPGETEEDVKETIELAKFIKKLGPKLYVSP-SPFVP 395 (490)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHHHhCccceEEE-eeeeC
Confidence 99999999 9999999999 7899999986 5655 34455
|
|
| >TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.5e-11 Score=122.39 Aligned_cols=215 Identities=17% Similarity=0.218 Sum_probs=147.6
Q ss_pred ccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCC-----CC---CCCCCcchHHHHHHHHHhc--CCcEEEEEe-eeCC
Q 017200 117 GECWSGGETGTATATIMILGDTCTRGCRFCNVKTS-----RA---PPPPDPDEPTNVAEAIASW--GLDYVVITS-VDRD 185 (375)
Q Consensus 117 ~ec~~~~~~~~~tatfm~i~d~C~~~C~FC~v~~~-----r~---~~~ld~eEi~~~a~al~~~--G~~eIvLTs-gdr~ 185 (375)
..||+...|...-.-.+.++.+|+.+|.||.-+.. +. ...++++|+++.++.+.+. +++.|.|+| |+--
T Consensus 12 hpc~~~~~~~~~~r~~~~vt~~CNl~C~yC~~~~~~~~esrpg~~~~~Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEPL 91 (442)
T TIGR01290 12 HPCYSVEAHHYFARMHLAVAPACNIQCNYCNRKYDCANESRPGVVSELLTPEQALRKARQVAAEIPQLSVVGIAGPGDPL 91 (442)
T ss_pred CCCCChhhccCcCEEEEecCCCCCCcCcCCCCCCCCCcCCCCccccccCCHHHHHHHHHHHHHhcCCCCEEEEecCCCcc
Confidence 57887544444445557789999999999996532 21 1238999999999988764 678899998 6532
Q ss_pred CCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccchH-HHHHHh----cCC--CCC--
Q 017200 186 DLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAV----RDH--RAN-- 256 (375)
Q Consensus 186 dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~m----r~r--~~s-- 256 (375)
..+ +...++++.+++..|++.+.+.+-.+. ..+.++.|++.|+|.+...+..++ +++.++ +.+ +++
T Consensus 92 l~~----e~~~~~l~~~~~~~~~i~i~lsTNG~~-l~e~i~~L~~~gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~ 166 (442)
T TIGR01290 92 ANI----GKTFQTLELVARQLPDVKLCLSTNGLM-LPEHVDRLVDLGVGHVTITINAIDPAVGEKIYPWVWYEGERYTGR 166 (442)
T ss_pred cCc----cccHHHHHHHHHhcCCCeEEEECCCCC-CHHHHHHHHHCCCCeEEEeccCCCHHHHhhcchhhccccccccCc
Confidence 222 235678888888888898887765443 478899999999998888887653 666554 211 121
Q ss_pred ------HHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCC-CCC-CCCCCcc--ccC
Q 017200 257 ------FKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM-RPS-KRHMPVS--EYI 326 (375)
Q Consensus 257 ------~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl-~P~-~~~~~v~--~~v 326 (375)
++..++.|+.+.+ .|+.++..+++==|.+++|+.+..+++++++++.+.+.+|. .|. ....++. +..
T Consensus 167 ~~~~il~e~~l~~l~~l~~---~G~~v~v~~vlIpGiND~~i~~l~~~~~~lg~~~~nl~p~~~~p~~G~~~~~~~~~~p 243 (442)
T TIGR01290 167 EAADLLIERQLEGLEKLTE---RGILVKVNSVLIPGINDEHLVEVSKQVKELGAFLHNVMPLISAPEHGTVYGLNGQREP 243 (442)
T ss_pred chHHHHHHHHHHHHHHHHh---CCCeEEEEEEeeCCcCHHHHHHHHHHHHhCCCcEEEeecCCCccccCCccCcCCCCCc
Confidence 4566788888877 46766666555457788999999999999999877776664 231 0111121 335
Q ss_pred CHHHHHHHHHHHH
Q 017200 327 TPEAFERYRALGM 339 (375)
Q Consensus 327 ~pe~~~~l~~~a~ 339 (375)
++++++.+++...
T Consensus 244 s~e~l~~~~~~~~ 256 (442)
T TIGR01290 244 DPDELAALRDRLE 256 (442)
T ss_pred CHHHHHHHHHHHH
Confidence 6677777766543
|
This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model. |
| >TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E | Back alignment and domain information |
|---|
Probab=99.37 E-value=9e-11 Score=116.99 Aligned_cols=170 Identities=17% Similarity=0.250 Sum_probs=130.2
Q ss_pred EEEEeeeCCccCCCCcCCCCCCC--CCCCCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC
Q 017200 129 TATIMILGDTCTRGCRFCNVKTS--RAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK 206 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~--r~~~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~ 206 (375)
...++.+++.|+.+|.||..... +....++.+++.+.++++.+.|+..|.||||+---.+| |.++++.+++.
T Consensus 7 ~~l~ieiT~~CNl~C~~C~~~~~~~~~~~~l~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~~-----~~~ii~~~~~~- 80 (358)
T TIGR02109 7 LWLLAELTHRCPLQCPYCSNPLELARRKAELTTEEWTDVLTQAAELGVLQLHFSGGEPLARPD-----LVELVAHARRL- 80 (358)
T ss_pred cEEEEeeccccCcCCCCCCCChhcccccCCCCHHHHHHHHHHHHhcCCcEEEEeCcccccccc-----HHHHHHHHHHc-
Confidence 34456689999999999987532 11235899999999999999999999999997432232 67888888765
Q ss_pred CCcEEEeecCCCCCChHHHHHHHHcCcccccccccchH-HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec
Q 017200 207 PNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 285 (375)
Q Consensus 207 p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl 285 (375)
++.+.+.+-...-+.+.++.|+++|++.+...+++.+ +.+.+++..+.+|++.++.++.+++ .|+.+...+++ .
T Consensus 81 -g~~~~l~TNG~ll~~e~~~~L~~~g~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~---~g~~v~v~~vv-~ 155 (358)
T TIGR02109 81 -GLYTNLITSGVGLTEARLDALADAGLDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKA---AGLPLTLNFVI-H 155 (358)
T ss_pred -CCeEEEEeCCccCCHHHHHHHHhCCCCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHh---CCCceEEEEEe-c
Confidence 3555555533322688999999999999999999874 8888888445679999999999998 46655433332 2
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEee
Q 017200 286 GETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 286 GET~ee~~etl~~Lrelgvd~v~i 309 (375)
..+.+++.+.+++++++|++.+.+
T Consensus 156 ~~N~~~l~~~~~~~~~lg~~~i~~ 179 (358)
T TIGR02109 156 RHNIDQIPEIIELAIELGADRVEL 179 (358)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEE
Confidence 789999999999999999998876
|
This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. |
| >COG1242 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-10 Score=111.02 Aligned_cols=194 Identities=20% Similarity=0.298 Sum_probs=122.4
Q ss_pred ccHHHHHHHHhcc---Ch--hhhhhhcCCCCcccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCCCCC--C-CCc-c
Q 017200 90 DKYVQIKKKLREL---KL--HTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPP--P-PDP-D 160 (375)
Q Consensus 90 ~~~~~~~~~l~~~---~L--~tvceeA~cpn~~ec~~~~~~~~~tatfm~i~d~C~~~C~FC~v~~~r~~~--~-ld~-e 160 (375)
..|..+...|++. +. .++-....|||+....+ ..+|.||+...+.... + .+. +
T Consensus 6 k~y~t~~~~lr~~fg~Kv~Kv~ld~GF~CPNRDGti~------------------rGGCtFC~~~g~~d~~~~~~~~i~~ 67 (312)
T COG1242 6 KLYYTLNDYLREKFGEKVFKVTLDGGFSCPNRDGTIG------------------RGGCTFCSVAGSGDFAGQPKISIAE 67 (312)
T ss_pred hHHHHHHHHHHHHhCCeeEEEeccCCCCCCCCCCccc------------------CCceeeecCCCCCccccCcccCHHH
Confidence 4466666666643 22 45667789999985444 3579999988653111 1 232 3
Q ss_pred hHHHHHHHHH-hcCC-cEEE-EEeeeCCCCCcccHHHHHHHHHHHHHhCCCc-EEEee-cCCCCCChHHHHHHHHcC--c
Q 017200 161 EPTNVAEAIA-SWGL-DYVV-ITSVDRDDLADQGSGHFAQTVRKLKELKPNM-LIEAL-VPDFRGNNGCVREVAKSG--L 233 (375)
Q Consensus 161 Ei~~~a~al~-~~G~-~eIv-LTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i-~Ie~l-~pd~~g~~e~l~~L~~aG--l 233 (375)
++.+.++.+. .|+- +++. ++..... +.+ .+-+.+.-+..... +++ -+.+- -||-. .++.|+.|.+.. .
T Consensus 68 Q~~~q~~~~~kK~~~~kyiaYFQ~~TNT-yAp--vevLre~ye~aL~~-~~VVGLsIgTRPDCl-pd~VldlL~e~~~r~ 142 (312)
T COG1242 68 QFKEQAERMHKKWKRGKYIAYFQAYTNT-YAP--VEVLREMYEQALSE-AGVVGLSIGTRPDCL-PDDVLDLLAEYNKRY 142 (312)
T ss_pred HHHHHHHHHHHhhcCCcEEEEEeccccc-cCc--HHHHHHHHHHHhCc-CCeeEEeecCCCCCC-cHHHHHHHHHHhhhe
Confidence 4444555333 4543 4443 3444332 222 22222322222111 332 33322 24543 345555554432 2
Q ss_pred c-cccccccchH-HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 234 N-VFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 234 d-v~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
+ .+..+++|+. +..+.|+ |++++..+.+.++.+++ .||.+++|||+|| |||.+|+++|++.+.+++++-|.+-
T Consensus 143 ~vWvELGLQT~h~~Tlk~iN-RgHd~~~y~dav~r~rk---rgIkvc~HiI~GLPgE~~~~mleTak~v~~~~v~GIKlH 218 (312)
T COG1242 143 EVWVELGLQTAHDKTLKRIN-RGHDFACYVDAVKRLRK---RGIKVCTHLINGLPGETRDEMLETAKIVAELGVDGIKLH 218 (312)
T ss_pred EEEEEeccchhhHHHHHHHh-cccchHHHHHHHHHHHH---cCCeEEEEEeeCCCCCCHHHHHHHHHHHHhcCCceEEEE
Confidence 2 2455677765 9999999 99999999999999999 5899999999999 9999999999999999999988774
|
|
| >COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-10 Score=119.13 Aligned_cols=170 Identities=16% Similarity=0.304 Sum_probs=128.6
Q ss_pred CccCCCCcCCCCCCCC--CCCCCC--cchHHHHHHHHHhc-----CCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC
Q 017200 137 DTCTRGCRFCNVKTSR--APPPPD--PDEPTNVAEAIASW-----GLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (375)
Q Consensus 137 d~C~~~C~FC~v~~~r--~~~~ld--~eEi~~~a~al~~~-----G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p 207 (375)
--|...|.||.+.+.- ...+.+ .+-+.++++..... -++.|.+-||+..-+. .+.+..++..|++.++
T Consensus 42 PFC~~~C~YC~fn~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTPslL~---~~~l~~ll~~l~~~~~ 118 (416)
T COG0635 42 PFCVSKCPYCDFNSHVTKRGQPVDEYLDALLEEIELVAALLGGQREVKTIYFGGGTPSLLS---PEQLERLLKALRELFN 118 (416)
T ss_pred ccccccCCCCCCeeeccCCCChHHHHHHHHHHHHHHHHhhcCCCCeEEEEEECCCccccCC---HHHHHHHHHHHHHhcc
Confidence 5899999999998632 111111 12223333333322 2567777777654444 4567777777776652
Q ss_pred ------CcEEEeecCCCCCChHHHHHHHHcCcccccccccchH-HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCc-eEEE
Q 017200 208 ------NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGT-LTKT 279 (375)
Q Consensus 208 ------~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl-~tkt 279 (375)
.+.||+-..++ +.+.++.++++|++++..++++.+ ++++.+. |.++.++..++++.+++. |+ .++.
T Consensus 119 ~~~~~~EitiE~nP~~~--~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lg-R~h~~~~~~~a~~~~~~~---g~~~in~ 192 (416)
T COG0635 119 DLDPDAEITIEANPGTV--EAEKFKALKEAGVNRISLGVQSFNDEVLKALG-RIHDEEEAKEAVELARKA---GFTSINI 192 (416)
T ss_pred cCCCCceEEEEeCCCCC--CHHHHHHHHHcCCCEEEeccccCCHHHHHHhc-CCCCHHHHHHHHHHHHHc---CCCcEEE
Confidence 35666533345 789999999999999999999765 9999999 999999999999999994 44 6899
Q ss_pred eEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CC
Q 017200 280 SIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RP 315 (375)
Q Consensus 280 ~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P 315 (375)
++|+|+ |+|.+++.++++.+.++++|.|++.+|. -|
T Consensus 193 DLIyglP~QT~~~~~~~l~~a~~l~pdhis~y~L~~~p 230 (416)
T COG0635 193 DLIYGLPGQTLESLKEDLEQALELGPDHLSLYSLAIEP 230 (416)
T ss_pred EeecCCCCCCHHHHHHHHHHHHhCCCCEEEEeeeecCC
Confidence 999999 9999999999999999999999999884 45
|
|
| >COG1856 Uncharacterized homolog of biotin synthetase [Function unknown] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.3e-10 Score=106.47 Aligned_cols=203 Identities=14% Similarity=0.157 Sum_probs=149.7
Q ss_pred cEEEEeeeCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHhcCCcEEEEEeee--CCCCCcccHHHHHHHHHHHHHh
Q 017200 128 ATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVD--RDDLADQGSGHFAQTVRKLKEL 205 (375)
Q Consensus 128 ~tatfm~i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~~G~~eIvLTsgd--r~dl~d~G~~~~~~lir~Ik~~ 205 (375)
++..+-+.|+.|..+|..|+-....+..+.+.++++....++.+.|..-+.|+||- +.+.| .+.|-+.++++|+.
T Consensus 10 k~~sISVTG~yC~lnC~HCg~~~L~~Mi~vt~~~l~k~~~el~kkGy~g~llSGGm~srg~VP---l~kf~d~lK~lke~ 86 (275)
T COG1856 10 KFISISVTGAYCSLNCPHCGRHYLEHMIKVTTKSLLKRCMELEKKGYEGCLLSGGMDSRGKVP---LWKFKDELKALKER 86 (275)
T ss_pred CCceEEEeccceEecChHHHHHHHHHhcccchHHHHHHHHHHHhcCceeEEEeCCcCCCCCcc---HHHHHHHHHHHHHh
Confidence 36667778999999999998776554555666899999999999999999999995 34445 78899999999987
Q ss_pred CCCcEEEeecCCCCCChHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec
Q 017200 206 KPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 285 (375)
Q Consensus 206 ~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl 285 (375)
. ++.+.+=++-. +++.++.|+.+++|++..-+=..+++.++|-.-..+.+++++.++.+++ .|+.+--||++|+
T Consensus 87 ~-~l~inaHvGfv--dE~~~eklk~~~vdvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e---~~irvvpHitiGL 160 (275)
T COG1856 87 T-GLLINAHVGFV--DESDLEKLKEELVDVVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKE---NGIRVVPHITIGL 160 (275)
T ss_pred h-CeEEEEEeeec--cHHHHHHHHHhcCcEEEEeecCChHHHHHHHcCCccHHHHHHHHHHHHH---cCceeceeEEEEe
Confidence 5 45555544433 6788999999999987654322234444443235678999999999999 5899999999999
Q ss_pred -CCCHHHHHHHHHHHHHcCCcEEeeecCCCCCC-CCCCccccCCHHHHHHHHHHHHH
Q 017200 286 -GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSK-RHMPVSEYITPEAFERYRALGME 340 (375)
Q Consensus 286 -GET~ee~~etl~~Lrelgvd~v~i~qYl~P~~-~~~~v~~~v~pe~~~~l~~~a~~ 340 (375)
+--.+.=.+.++.|.+..+|.+-+.-++ |+. ..+.....+++++....-..|++
T Consensus 161 ~~gki~~e~kaIdiL~~~~~DalVl~vli-PtpGtkm~~~~pp~~eE~i~v~~~AR~ 216 (275)
T COG1856 161 DFGKIHGEFKAIDILVNYEPDALVLVVLI-PTPGTKMGNSPPPPVEEAIKVVKYARK 216 (275)
T ss_pred ccCcccchHHHHHHHhcCCCCeEEEEEEe-cCCchhccCCCCcCHHHHHHHHHHHHH
Confidence 4455555688999999999976664444 522 22333444566777777777766
|
|
| >TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.3e-10 Score=101.64 Aligned_cols=163 Identities=15% Similarity=0.171 Sum_probs=115.8
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCC---CCCCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHh
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSR---APPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r---~~~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~ 205 (375)
..++++.+++|+.+|+||..+... ....++++++.+.++.. ...++.|.|+||+.--.+ ++.++++.+++.
T Consensus 16 ~~~~~~~t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~-~~~~~~i~~sGGEPll~~-----~l~~li~~~~~~ 89 (191)
T TIGR02495 16 KLAFTIFFQGCNLKCPYCHNPELIDREGSGEIEVEFLLEFLRSR-QGLIDGVVITGGEPTLQA-----GLPDFLRKVREL 89 (191)
T ss_pred CeEEEEEcCCCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHh-cCCCCeEEEECCcccCcH-----hHHHHHHHHHHC
Confidence 557777799999999999987431 11248888888887764 234789999998742212 277888888774
Q ss_pred CCCcEEEeecCCCCCChHHHHHHHHcC-cccccccccchHHHHHHhcCCCCCHH-HHHHHHHHHHHhCCCCceEEEeEEE
Q 017200 206 KPNMLIEALVPDFRGNNGCVREVAKSG-LNVFAHNIETVEELQSAVRDHRANFK-QSLDVLMMAKDYVPAGTLTKTSIML 283 (375)
Q Consensus 206 ~p~i~Ie~l~pd~~g~~e~l~~L~~aG-ldv~~hnlEtv~rl~~~mr~r~~s~~-~~l~vl~~ak~~~p~Gl~tkt~imv 283 (375)
++.+.+.+-.. ..+.++.++++| ++.+...++..++.+..+..++.+++ ..++.++.+++.... +.+.+.++=
T Consensus 90 --g~~v~i~TNg~--~~~~l~~l~~~g~~~~v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~gi~-~~i~~~v~~ 164 (191)
T TIGR02495 90 --GFEVKLDTNGS--NPRVLEELLEEGLVDYVAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLRSGIP-FELRTTVHR 164 (191)
T ss_pred --CCeEEEEeCCC--CHHHHHHHHhcCCCcEEEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHHcCCC-EEEEEEEeC
Confidence 46665555333 567889999998 58888878876666766653455665 889999999984222 345555555
Q ss_pred ecCCCHHHHHHHHHHHHHcC
Q 017200 284 GCGETPDQVVSTMEKVRAAG 303 (375)
Q Consensus 284 GlGET~ee~~etl~~Lrelg 303 (375)
|.-. ++|+.+.++++++.+
T Consensus 165 ~~~~-~~ei~~~~~~l~~~~ 183 (191)
T TIGR02495 165 GFLD-EEDLAEIATRIKENG 183 (191)
T ss_pred CCCC-HHHHHHHHHHhccCC
Confidence 6643 779999999999888
|
This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD. |
| >TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-09 Score=107.40 Aligned_cols=170 Identities=16% Similarity=0.151 Sum_probs=122.5
Q ss_pred EEEeeeCCccCCCCcCCCCCCCCCC---CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC
Q 017200 130 ATIMILGDTCTRGCRFCNVKTSRAP---PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK 206 (375)
Q Consensus 130 atfm~i~d~C~~~C~FC~v~~~r~~---~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~ 206 (375)
.-.+.+++.|+.+|.||.......+ ..++++++.+.+ .+.|+..|.|+||+---.+| +.++++.+++.
T Consensus 29 ~l~le~T~~CNL~C~~C~~~~~~~~~~~~~ls~ee~~~~i---~e~g~~~V~i~GGEPLL~pd-----l~eiv~~~~~~- 99 (318)
T TIGR03470 29 VLMLEPLFRCNLACAGCGKIQYPAEILKQRLSVEECLRAV---DECGAPVVSIPGGEPLLHPE-----IDEIVRGLVAR- 99 (318)
T ss_pred EEEEecccccCcCCcCCCCCcCCCcccccCCCHHHHHHHH---HHcCCCEEEEeCcccccccc-----HHHHHHHHHHc-
Confidence 3345679999999999986542211 137777776654 45799999999996322233 66788888765
Q ss_pred CCcEEEeecCCCCCChHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC
Q 017200 207 PNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG 286 (375)
Q Consensus 207 p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlG 286 (375)
+..+.+.+-... -.+.+..++++|.+.+...+++.++.+.+++.++.+|+..++.++.+++ .|+.+...+.+=-+
T Consensus 100 -g~~v~l~TNG~l-l~~~~~~l~~~~~~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I~~l~~---~G~~v~v~~tv~~~ 174 (318)
T TIGR03470 100 -KKFVYLCTNALL-LEKKLDKFEPSPYLTFSVHLDGLREHHDASVCREGVFDRAVEAIREAKA---RGFRVTTNTTLFND 174 (318)
T ss_pred -CCeEEEecCcee-hHHHHHHHHhCCCcEEEEEEecCchhhchhhcCCCcHHHHHHHHHHHHH---CCCcEEEEEEEeCC
Confidence 345554443221 2456788999998888888887777776665567899999999999998 46666555544237
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 287 ETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 287 ET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
++.+++.+.++.++++|++.+.+.+.+
T Consensus 175 ~n~~ei~~~~~~~~~lGv~~i~i~p~~ 201 (318)
T TIGR03470 175 TDPEEVAEFFDYLTDLGVDGMTISPGY 201 (318)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 999999999999999999988885443
|
The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH |
| >TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-09 Score=102.59 Aligned_cols=198 Identities=14% Similarity=0.163 Sum_probs=131.8
Q ss_pred EEEeeeCCccCCCCcCCCCCCCCC---CCCCCcchHHHHHHHHHhcC---CcEEEEEeeeCCCCCcccHHHHHHHHHHHH
Q 017200 130 ATIMILGDTCTRGCRFCNVKTSRA---PPPPDPDEPTNVAEAIASWG---LDYVVITSVDRDDLADQGSGHFAQTVRKLK 203 (375)
Q Consensus 130 atfm~i~d~C~~~C~FC~v~~~r~---~~~ld~eEi~~~a~al~~~G---~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik 203 (375)
..+++.+.+|+.+|.||....... ...++++++++.++.+...+ .+.|.+|||+-- + . .+.+.++++.++
T Consensus 16 ~~~~v~~~gCnl~C~~C~~~~~~~~~~~~~~s~e~i~~~i~~~~~~~~~~~~~I~~~GGEPl-l-~--~~~~~~li~~~~ 91 (235)
T TIGR02493 16 IRFVVFMQGCPLRCQYCHNPDTWDLKGGTEVTPEELIKEVGSYKDFFKASGGGVTFSGGEPL-L-Q--PEFLSELFKACK 91 (235)
T ss_pred ceEEEEECCCCCcCCCCCChhhccCCCCEECCHHHHHHHHHHhHHHHhcCCCeEEEeCcccc-c-C--HHHHHHHHHHHH
Confidence 355578899999999998653211 12488999988888776543 258999997632 2 1 344568889888
Q ss_pred HhCCCcEEEeecCCCC-CChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE
Q 017200 204 ELKPNMLIEALVPDFR-GNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI 281 (375)
Q Consensus 204 ~~~p~i~Ie~l~pd~~-g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~i 281 (375)
+. ++.+.+.+..+. ...+.++.+.+ .+|.+...+++. ++.+.+++ +. ++++.++.++.+++. |+.+...+
T Consensus 92 ~~--g~~~~i~TNG~~~~~~~~~~~ll~-~~d~v~isl~~~~~~~~~~~~-g~-~~~~v~~~i~~l~~~---g~~~~v~~ 163 (235)
T TIGR02493 92 EL--GIHTCLDTSGFLGGCTEAADELLE-YTDLVLLDIKHFNPEKYKKLT-GV-SLQPTLDFAKYLAKR---NKPIWIRY 163 (235)
T ss_pred HC--CCCEEEEcCCCCCccHHHHHHHHH-hCCEEEEeCCCCCHHHHHHHH-CC-CcHHHHHHHHHHHhC---CCcEEEEE
Confidence 74 455555554332 12566777766 467777788875 58888887 33 889999999999984 55554444
Q ss_pred EE--ecCCCHHHHHHHHHHHHHcC-CcEEeeecCCCCCCC--------C--CCccccCCHHHHHHHHHHHHH
Q 017200 282 ML--GCGETPDQVVSTMEKVRAAG-VDVMTFGQYMRPSKR--------H--MPVSEYITPEAFERYRALGME 340 (375)
Q Consensus 282 mv--GlGET~ee~~etl~~Lrelg-vd~v~i~qYl~P~~~--------~--~~v~~~v~pe~~~~l~~~a~~ 340 (375)
++ |..++.+|+.+..+++++++ +..+.+.+| +|... . +.-...++.++.+++++++++
T Consensus 164 vv~~~~~~n~~ei~~l~~~~~~l~~~~~~~~~p~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (235)
T TIGR02493 164 VLVPGYTDSEEDIEALAEFVKTLPNVERVEVLPY-HQLGVYKWEALGIEYPLEGVKPPNKEQLERAAEIFKE 234 (235)
T ss_pred eeeCCcCCCHHHHHHHHHHHHhCCCCceEEecCC-CcccHHHHHHcCCcCccCCCCCCCHHHHHHHHHHHhh
Confidence 44 44568899999999999999 577777544 34211 1 111122456677777777654
|
An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue. |
| >TIGR01211 ELP3 histone acetyltransferase, ELP3 family | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.8e-10 Score=116.28 Aligned_cols=176 Identities=15% Similarity=0.235 Sum_probs=132.1
Q ss_pred cEEEEeeeCCccC-CCCcCCCC-------CCC---CCCCC--------CCcchHHHHHHHHHhcCC--c--EEEEEeeeC
Q 017200 128 ATATIMILGDTCT-RGCRFCNV-------KTS---RAPPP--------PDPDEPTNVAEAIASWGL--D--YVVITSVDR 184 (375)
Q Consensus 128 ~tatfm~i~d~C~-~~C~FC~v-------~~~---r~~~~--------ld~eEi~~~a~al~~~G~--~--eIvLTsgdr 184 (375)
++++.|-----|+ ..|.||-- +.+ ..|.. -+..++...++++...|- + |+.|-||+-
T Consensus 67 ~~v~vm~~p~~cph~~c~~cp~~~~~~~~~~sy~~~ep~~~ra~~~~~dpy~q~~~rl~~l~~~g~~~~kvE~i~~GGTf 146 (522)
T TIGR01211 67 AVVAVMTSPHRCPHGKCLYCPGGPDSENSPQSYTGYEPAAMRGRQNDYDPYEQVTARLEQLEQIGHPVDKVELIIMGGTF 146 (522)
T ss_pred EEEEEecCCccCCCCceEeCCCCCCcCCCCcccCCCCcHhHHHHHcCCCcHHHHHHHHHHHHHhCCCCceEEEEEECCCc
Confidence 4555553346799 57999974 111 12221 244677778889988873 3 558899987
Q ss_pred CCCCcccHHHHHHHHHHHHHhCCC---------------------------cEEEeecCCCCCChHHHHHHHHcCccccc
Q 017200 185 DDLADQGSGHFAQTVRKLKELKPN---------------------------MLIEALVPDFRGNNGCVREVAKSGLNVFA 237 (375)
Q Consensus 185 ~dl~d~G~~~~~~lir~Ik~~~p~---------------------------i~Ie~l~pd~~g~~e~l~~L~~aGldv~~ 237 (375)
..++ .++...+|+.+.+..++ +.|+ .-||.. +.+.|+.|+++|++.+.
T Consensus 147 t~l~---~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiE-tRPD~i-~~e~L~~L~~~G~~rVs 221 (522)
T TIGR01211 147 PARD---LDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIE-TRPDYC-REEHIDRMLKLGATRVE 221 (522)
T ss_pred ccCC---HHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEE-EcCCcC-CHHHHHHHHHcCCCEEE
Confidence 7776 34444455544443322 2222 256765 78999999999999999
Q ss_pred ccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHH---cCCcEEeeecC
Q 017200 238 HNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRA---AGVDVMTFGQY 312 (375)
Q Consensus 238 hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~ee~~etl~~Lre---lgvd~v~i~qY 312 (375)
.++|+. +++++.|+ |+++.++..+.++.+++ .|+.+..++|+|| |||.++..++++.+-+ +++|.+.+.+.
T Consensus 222 lGVQS~~d~VL~~in-Rght~~~v~~Ai~~lr~---~G~~v~~~LM~GLPgqt~e~~~~t~~~l~~~~~l~pD~Ikiypl 297 (522)
T TIGR01211 222 LGVQTIYNDILERTK-RGHTVRDVVEATRLLRD---AGLKVVYHIMPGLPGSSFERDLEMFREIFEDPRFKPDMLKIYPT 297 (522)
T ss_pred EECccCCHHHHHHhC-CCCCHHHHHHHHHHHHH---cCCeEEEEeecCCCCCCHHHHHHHHHHHHhccCCCcCEEEEecc
Confidence 999976 59999999 89999999999999999 5899999999999 9999999999999985 89999999753
|
The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases. |
| >COG2516 Biotin synthase-related enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.1e-10 Score=108.92 Aligned_cols=202 Identities=18% Similarity=0.313 Sum_probs=131.1
Q ss_pred EEEEeeeC--CccCCCCcCCCCCCCC--CCCC-----CCcch--HHHHHHHHHh-cC-CcEEEEEeeeCCCCCcccHHHH
Q 017200 129 TATIMILG--DTCTRGCRFCNVKTSR--APPP-----PDPDE--PTNVAEAIAS-WG-LDYVVITSVDRDDLADQGSGHF 195 (375)
Q Consensus 129 tatfm~i~--d~C~~~C~FC~v~~~r--~~~~-----ld~eE--i~~~a~al~~-~G-~~eIvLTsgdr~dl~d~G~~~~ 195 (375)
+..|+..+ .+|..+|+||.+.++. +|+. .++.. +....+.+.. .| .+.|+++-.+.+... ...
T Consensus 29 ~ta~l~t~~~~~c~~~ca~c~~ar~s~a~p~~~~lsRv~w~~v~l~~~~~~~~~~~g~~~rici~~i~~p~~~----~d~ 104 (339)
T COG2516 29 TTAYLMTTYPGGCIADCAYCPQARSSTANPPKKVLSRVEWPAVALEEVLKRLFYDLGNFKRICIQQIAYPRAL----NDL 104 (339)
T ss_pred ceeeeeeecCCceeechhhChhhhhcccCCCcceeeecccccchHHHHHhHhhhhhcccccccceeecccccc----chh
Confidence 44444444 8999999999998743 2221 11111 1112222222 23 588888877654332 124
Q ss_pred HHHHHHHHHhC-CCcEEE-eecCCCCCChHHHHHHHHcCcccccccccchH-HHHHHhc-CC--CCCHHHHHHHHHHHHH
Q 017200 196 AQTVRKLKELK-PNMLIE-ALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVR-DH--RANFKQSLDVLMMAKD 269 (375)
Q Consensus 196 ~~lir~Ik~~~-p~i~Ie-~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~mr-~r--~~s~~~~l~vl~~ak~ 269 (375)
..+++.+.-.. -.+.|+ ++++-- ..+.+...+..|.|.+...+|.+. ++|++++ +- .++|++.++.|+++.+
T Consensus 105 ~~i~~~~~~~~~~~itiseci~~~~--~~~~l~e~~klg~d~l~V~~daa~~~~~e~v~~~s~s~~S~e~~~~~l~~~~~ 182 (339)
T COG2516 105 KLILERLHIRLGDPITISECITAVS--LKEELEEYRKLGADYLGVAEDAANEELFEKVRKTSGSPHSWERYWEFLEKVAE 182 (339)
T ss_pred hhhhhhhhhccCCceehhhhhhccc--chHHHHHHHhcchhhhhHHHHhcCHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Confidence 55666665221 123333 233321 267889999999999999988765 9999884 22 3789999999999999
Q ss_pred hCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHh
Q 017200 270 YVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEM 341 (375)
Q Consensus 270 ~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~ 341 (375)
.++.| .+..+++||+||||+++++++...++.+--+--+ .| -| -+++++.+...+ -.++++++....
T Consensus 183 ~~~k~-rv~ihliVglGesD~~~ve~~~~v~~~g~~v~Lf-af-~P-~~gt~me~r~~~-pve~Yrk~q~a~ 249 (339)
T COG2516 183 AFGKG-RVGIHLIVGLGESDKDIVETIKRVRKRGGIVSLF-AF-TP-LKGTQMENRKPP-PVERYRKIQVAR 249 (339)
T ss_pred HhccC-CcceeEEeccCCchHHHHHHHHHHHhcCceEEEE-Ee-cc-cccccccCCCCC-cHHHHHHHHHHH
Confidence 99875 7999999999999999999999999998654333 33 36 456666654332 355555554443
|
|
| >PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.1e-09 Score=101.77 Aligned_cols=205 Identities=11% Similarity=0.166 Sum_probs=135.2
Q ss_pred EeeeCCccCCCCcCCCCCCCC---CCCCCCcchHHHHHHHHHhc---CCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHh
Q 017200 132 IMILGDTCTRGCRFCNVKTSR---APPPPDPDEPTNVAEAIASW---GLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205 (375)
Q Consensus 132 fm~i~d~C~~~C~FC~v~~~r---~~~~ld~eEi~~~a~al~~~---G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~ 205 (375)
+++...+|+.+|.||.-+... ....++++|+++.++..... ..+.|++|||+-- + . .+.+.++++.+++.
T Consensus 23 ~~~f~~gCnl~C~~C~~~~~~~~~~~~~lt~eei~~~i~~~~~~~~~~~~~V~~sGGEPl-l-~--~~~~~~l~~~~k~~ 98 (246)
T PRK11145 23 FITFFQGCLMRCLYCHNRDTWDTHGGKEVTVEELMKEVVTYRHFMNASGGGVTASGGEAI-L-Q--AEFVRDWFRACKKE 98 (246)
T ss_pred EEEEECCCCCcCCCCCCHHHCCCCCCeEcCHHHHHHHHHHhHHHHhcCCCeEEEeCccHh-c-C--HHHHHHHHHHHHHc
Confidence 446678999999999965421 11248899998887765443 3468999998632 2 1 34456888999874
Q ss_pred CCCcEEEeecCCCC-CChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEE
Q 017200 206 KPNMLIEALVPDFR-GNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIML 283 (375)
Q Consensus 206 ~p~i~Ie~l~pd~~-g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imv 283 (375)
++.+.+.+-.+. ...+.++.+.+ .+|.+...+++. ++.++.+++ .+.+..++.++.+++.... +.+.+-+|=
T Consensus 99 --g~~i~l~TNG~~~~~~~~~~~ll~-~~d~v~islk~~~~e~~~~~~g--~~~~~~l~~i~~l~~~g~~-v~i~~~li~ 172 (246)
T PRK11145 99 --GIHTCLDTNGFVRRYDPVIDELLD-VTDLVMLDLKQMNDEIHQNLVG--VSNHRTLEFARYLAKRNQK-TWIRYVVVP 172 (246)
T ss_pred --CCCEEEECCCCCCcchHHHHHHHH-hCCEEEECCCcCChhhcccccC--CChHHHHHHHHHHHhCCCc-EEEEEEEEC
Confidence 455554443332 12467777765 368777788876 478888873 3557778888888874322 455666666
Q ss_pred ecCCCHHHHHHHHHHHHHcC-CcEEeeecCCCCCC-------CCCCcc--ccCCHHHHHHHHHHHHHhhhhhh
Q 017200 284 GCGETPDQVVSTMEKVRAAG-VDVMTFGQYMRPSK-------RHMPVS--EYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 284 GlGET~ee~~etl~~Lrelg-vd~v~i~qYl~P~~-------~~~~v~--~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
|+.++++|+.+..+++++++ +..+.+-+|-++.. ...++. +..++++.+.+.+++.+.|+.++
T Consensus 173 g~nd~~~ei~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~g~~~~ 245 (246)
T PRK11145 173 GWTDDDDSAHRLGEFIKDMGNIEKIELLPYHELGKHKWEAMGEEYKLDGVKPPSKETMERVKGILEQYGHKVM 245 (246)
T ss_pred CCCCCHHHHHHHHHHHHhcCCcceEEEecCCccchhHHHHcCCcccccCCCCCCHHHHHHHHHHHHHcCCccc
Confidence 77778889999999999886 55666655532211 011221 33567888888888888887664
|
|
| >TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.1e-09 Score=103.69 Aligned_cols=190 Identities=15% Similarity=0.190 Sum_probs=129.3
Q ss_pred ChhhhhhhcCCCCcccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCCCC---CCCCcchHHHHHHHHHh-cCCcEEE
Q 017200 103 KLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAP---PPPDPDEPTNVAEAIAS-WGLDYVV 178 (375)
Q Consensus 103 ~L~tvceeA~cpn~~ec~~~~~~~~~tatfm~i~d~C~~~C~FC~v~~~r~~---~~ld~eEi~~~a~al~~-~G~~eIv 178 (375)
...-++|+...|--|-. |-+.....+.++++|+.+|+||..+...++ ..++.+++.+.++.+++ .|+.+|+
T Consensus 67 ~~dp~~e~~~~~~~gl~-----hkyp~rvll~vT~~C~~~Cr~C~r~~~~~~~~~~~l~~~e~~~~i~~i~~~~~I~~Vi 141 (321)
T TIGR03822 67 RADPIGDDAHSPVPGIV-----HRYPDRVLLKPVHVCPVYCRFCFRREMVGPEGLGVLSPAELDAAFAYIADHPEIWEVI 141 (321)
T ss_pred CCCCcccccCCCCCCcc-----cCCCCEEEEEecCCCCCcCcCCCchhhcCCcccCcCCHHHHHHHHHHHHhCCCccEEE
Confidence 45667776655544321 112234455679999999999997653221 23677889888888875 4999999
Q ss_pred EEeeeCCCCCcccHHHHHHHHHHHHHhCCCc---EEEee----cCCCCCChHHHHHHHHcCcccccccccchHHHHHHhc
Q 017200 179 ITSVDRDDLADQGSGHFAQTVRKLKELKPNM---LIEAL----VPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVR 251 (375)
Q Consensus 179 LTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i---~Ie~l----~pd~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr 251 (375)
|||||---+. ...+.++++.+++. |.+ ++..- .|... +.+.++.|+++|.. +..++++..
T Consensus 142 lSGGDPl~~~---~~~L~~ll~~l~~i-~~v~~iri~Tr~~v~~p~ri-t~ell~~L~~~g~~-v~i~l~~~h------- 208 (321)
T TIGR03822 142 LTGGDPLVLS---PRRLGDIMARLAAI-DHVKIVRFHTRVPVADPARV-TPALIAALKTSGKT-VYVALHANH------- 208 (321)
T ss_pred EeCCCcccCC---HHHHHHHHHHHHhC-CCccEEEEeCCCcccChhhc-CHHHHHHHHHcCCc-EEEEecCCC-------
Confidence 9999854443 24578888888763 443 34321 23322 68899999999954 445555531
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCceEEEeEEE--ecCCCHHHHHHHHHHHHHcCCcEEeeecCCCC
Q 017200 252 DHRANFKQSLDVLMMAKDYVPAGTLTKTSIML--GCGETPDQVVSTMEKVRAAGVDVMTFGQYMRP 315 (375)
Q Consensus 252 ~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imv--GlGET~ee~~etl~~Lrelgvd~v~i~qYl~P 315 (375)
++.. .++.++.++.+++ .|+.+.....+ |..++.+++.++++.+.++|+....+.++ .|
T Consensus 209 ~~el-~~~~~~ai~~L~~---~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~-~p 269 (321)
T TIGR03822 209 AREL-TAEARAACARLID---AGIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLHHL-DL 269 (321)
T ss_pred hhhc-CHHHHHHHHHHHH---cCCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEec-CC
Confidence 0111 3778888999988 57776554333 88999999999999999999988777544 45
|
Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc. |
| >PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1e-08 Score=103.39 Aligned_cols=201 Identities=13% Similarity=0.141 Sum_probs=135.9
Q ss_pred eCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHH--------HhcCCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHHh
Q 017200 135 LGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAI--------ASWGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKEL 205 (375)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al--------~~~G~~eIvLTs-gdr~dl~d~G~~~~~~lir~Ik~~ 205 (375)
.+.+|+.+|.||.-....-...++.+|+++.+..+ ...|++.|+++| |+.-.. .+.+.+.|+.+++.
T Consensus 127 sq~GCnl~C~FC~tg~~g~~rnLt~~EI~~qv~~~~~~~~~~~~~~~v~nIvfmGmGEPLln----~d~v~~~i~~l~~~ 202 (368)
T PRK14456 127 SQAGCALRCSFCATGQMGFRRNLTAGEITGQVFALSDMLAERNRERGITNIVFMGMGEPLLN----TDNVFEAVLTLSTR 202 (368)
T ss_pred ecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhhccCCccEEEEeCcCccccC----HHHHHHHHHHHhcc
Confidence 48999999999987653222248899999886443 246799999999 753221 33577888877653
Q ss_pred -CC-C---cEEEeecCCCCCChHHHHHHHHcCcc-cccccccch-HHHHHHhcC---CCCCHHHHHHHHHHHHHhCCCCc
Q 017200 206 -KP-N---MLIEALVPDFRGNNGCVREVAKSGLN-VFAHNIETV-EELQSAVRD---HRANFKQSLDVLMMAKDYVPAGT 275 (375)
Q Consensus 206 -~p-~---i~Ie~l~pd~~g~~e~l~~L~~aGld-v~~hnlEtv-~rl~~~mr~---r~~s~~~~l~vl~~ak~~~p~Gl 275 (375)
.. + -+|.+.+-. -.+.++.|.++|++ .++..+++. ++.+.++.| +++++++.++.++...+..+.-+
T Consensus 203 ~~~~~is~r~ItisT~G---l~~~i~~L~~~gl~~~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V 279 (368)
T PRK14456 203 KYRFSISQRKITISTVG---ITPEIDRLATSGLKTKLAVSLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGEPV 279 (368)
T ss_pred ccccCcCcCeeEEECCC---ChHHHHHHHHcCCCceEEEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 11 1 134444422 34568999999997 688888876 489988853 46799999999985433322214
Q ss_pred eEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 276 LTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 276 ~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
.+..-+|=|+-.+++|+.+..++++++.+ .|.+-+|. |.. ..+. +...++..+.++++..+.|+...
T Consensus 280 ~ieyvLI~GvNDs~eda~~L~~~l~~~~~-~VnlIpyn-~~~-~~~~-~~ps~e~i~~F~~~L~~~Gi~vt 346 (368)
T PRK14456 280 TLVYMLLEGINDSPEDARKLIRFASRFFC-KINLIDYN-SIV-NIKF-EPVCSSTRERFRDRLLDAGLQVT 346 (368)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHHHhcCCC-eeEEeeec-cCC-CCCC-CCCCHHHHHHHHHHHHHCCCcEE
Confidence 45666777889999999999999999854 23333443 311 1221 12456778888888888888664
|
|
| >PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-08 Score=102.18 Aligned_cols=203 Identities=13% Similarity=0.145 Sum_probs=134.0
Q ss_pred EeeeCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHH---hcCCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHHhC-
Q 017200 132 IMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIA---SWGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELK- 206 (375)
Q Consensus 132 fm~i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~---~~G~~eIvLTs-gdr~dl~d~G~~~~~~lir~Ik~~~- 206 (375)
-+..+.||+.+|.||.-....-...++.+|+++.+..+. ..+++.|+++| |+.-.- .+.+.+.++.++...
T Consensus 104 cissq~GC~l~C~fC~tg~~g~~r~lt~~EI~~qv~~~~~~~~~~v~~Vvf~GmGEPLln----~d~v~~~i~~l~~~~~ 179 (343)
T PRK14469 104 CISTQVGCPVKCIFCATGQSGFVRNLTTGEIVSQILAMEKEEKKKVGNVVYMGMGEPLLN----YENVIKSIKILNHKKM 179 (343)
T ss_pred EEEecCCCCCcCcCCCCCCCCccccCCHHHHHHHHHHHHHhccCCcCeEEEEccChhhhh----HHHHHHHHHHHhchhc
Confidence 344679999999999865432122488999988876543 34789999999 753211 334566676665321
Q ss_pred --CCc-EEEeecCCCCCChHHHHHHHHcCccc-ccccccchH-HHHHHhcC--CCCCHHHHHHHHHHHHHhCCCCceEEE
Q 017200 207 --PNM-LIEALVPDFRGNNGCVREVAKSGLNV-FAHNIETVE-ELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKT 279 (375)
Q Consensus 207 --p~i-~Ie~l~pd~~g~~e~l~~L~~aGldv-~~hnlEtv~-rl~~~mr~--r~~s~~~~l~vl~~ak~~~p~Gl~tkt 279 (375)
-+. +|.+.+- |..+.++.|.++|+|+ ++..+++.+ +.++++.| +++++++.++.++...+.....+.+..
T Consensus 180 ~~~g~~~itisTn---G~~~~i~~L~~~~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~~~~~~v~i~y 256 (343)
T PRK14469 180 KNIGIRRITISTV---GIPEKIIQLAEEGLDVKLALSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQKKTGNRVTIEY 256 (343)
T ss_pred ccCCCCeEEEECC---CChHHHHHHHhhCCCcEEEEEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHHHhCCeEEEEE
Confidence 112 4444442 3467899999999994 788888664 77887653 578999999988876653222244445
Q ss_pred eEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 280 SIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 280 ~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
-+|-|+..+++|+.+..++++.+++. |.+-+|- |... .+ +....+..+.+.++..+.|+...
T Consensus 257 vlI~g~NDs~ed~~~La~llk~~~~~-VnLIpyn-p~~~--~~-~~ps~e~l~~f~~~l~~~gi~vt 318 (343)
T PRK14469 257 ILIKGFNDEIEDAKKLAELLKGLKVF-VNLIPVN-PTVP--GL-EKPSRERIERFKEILLKNGIEAE 318 (343)
T ss_pred EEECCCCCCHHHHHHHHHHHhccCcE-EEEEecC-CCCc--cC-CCCCHHHHHHHHHHHHHCCCeEE
Confidence 56668889999999999999998764 5555553 3211 11 22345677778887777777553
|
|
| >PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.8e-08 Score=101.02 Aligned_cols=205 Identities=12% Similarity=0.129 Sum_probs=129.3
Q ss_pred EEeeeCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHH-hcCCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHHhC--
Q 017200 131 TIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIA-SWGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELK-- 206 (375)
Q Consensus 131 tfm~i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~-~~G~~eIvLTs-gdr~dl~d~G~~~~~~lir~Ik~~~-- 206 (375)
..+..+.+|+.+|.||.-........++++|+++.+..+. ..++++|+++| |+ | +.. .+.+.+.++.+++..
T Consensus 105 ~cvSsq~GC~~~C~FC~tg~~~~~r~lt~~EI~~qv~~~~~~~~i~~IvfmG~GE-P-l~n--~~~vi~~l~~l~~~~gl 180 (349)
T PRK14463 105 LCISSQVGCAMGCAFCLTGTFRLTRNLTTAEIVNQVCAVKRDVPVRNIVFMGMGE-P-LAN--LDNVIPALQILTDPDGL 180 (349)
T ss_pred EEEEecCCcCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCccEEEEecCCc-c-hhc--HHHHHHHHHHhhccccc
Confidence 3455799999999999755422223489999998877654 35799999999 65 3 222 445555566654311
Q ss_pred --CCcEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcC--CCCCHHHHHHHHHHHHHhCCCCceEEEeE
Q 017200 207 --PNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKTSI 281 (375)
Q Consensus 207 --p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~--r~~s~~~~l~vl~~ak~~~p~Gl~tkt~i 281 (375)
+.-+|.+.+-.+ .+.+..+.+...-.++..+++. ++++++|-| ++++.++-++.++...+....-+.+..-+
T Consensus 181 ~~s~r~itVsTnGl---~~~i~~l~~~~~~~LaiSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvL 257 (349)
T PRK14463 181 QFSTRKVTVSTSGL---VPEMEELGREVTVNLAVSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVM 257 (349)
T ss_pred CcCCceEEEECCCc---hHHHHHHhhccCeEEEEeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEE
Confidence 112455444332 2344455443211244567766 599998743 57888888888776665332213444556
Q ss_pred EEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 282 MLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 282 mvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
|=|+.++++|+.+..++++++++ .|.+-+| .|.. .... +..++++.+.++.+..+.|+...
T Consensus 258 I~GvNDs~e~~~~L~~ll~~l~~-~vnlIPy-n~~~-~~~~-~~ps~e~i~~f~~~L~~~gi~v~ 318 (349)
T PRK14463 258 IRGLNDSLEDAKRLVRLLSDIPS-KVNLIPF-NEHE-GCDF-RSPTQEAIDRFHKYLLDKHVTVI 318 (349)
T ss_pred eCCCCCCHHHHHHHHHHHhccCc-eEEEEec-CCCC-CCCC-CCCCHHHHHHHHHHHHHCCceEE
Confidence 66679999999999999999876 4666566 3421 2221 22456778888888777777553
|
|
| >PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.2e-08 Score=100.55 Aligned_cols=200 Identities=11% Similarity=0.132 Sum_probs=132.4
Q ss_pred eCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHh------cCCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHHhCC
Q 017200 135 LGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIAS------WGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELKP 207 (375)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~------~G~~eIvLTs-gdr~dl~d~G~~~~~~lir~Ik~~~p 207 (375)
.+-||+.+|.||+.........++++|+++.+..+.. .|++.||++| |+.- + . .+.+.++++.+++..
T Consensus 115 sqvGC~~~C~FC~t~~~~~~r~lt~~EIv~qv~~~~~~~~~~g~~v~~Vv~~GmGEPL-l-n--~~~v~~~l~~l~~~~- 189 (356)
T PRK14455 115 TQVGCRIGCTFCASTLGGLKRDLEAGEIVAQVMLVQKYLDETEERVSHIVVMGIGEPF-D-N--YDNVMDFLRIINDDK- 189 (356)
T ss_pred CCCCCCCCCCcCCCCCCCCCccCCHHHHHHHHHHHHHHHhhcCCCcceEEEecccccc-C-C--HHHHHHHHHHHhccc-
Confidence 4679999999999886543345999999998775432 3688999999 5432 1 1 456778888887531
Q ss_pred Cc-----EEEeecCCCCCChHHHHHHHHcCccc-ccccccch-HHHHHHhcC--CCCCHHHHHHHHHHHHHhCCCCceEE
Q 017200 208 NM-----LIEALVPDFRGNNGCVREVAKSGLNV-FAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTK 278 (375)
Q Consensus 208 ~i-----~Ie~l~pd~~g~~e~l~~L~~aGldv-~~hnlEtv-~rl~~~mr~--r~~s~~~~l~vl~~ak~~~p~Gl~tk 278 (375)
++ ++.+.+-.+ ...+..+.+.++++ +...+++. +++++++.| ++++.++.++.++.+.+....-+.+.
T Consensus 190 g~~~s~r~itvsT~G~---~~~i~~l~d~~l~~~LaiSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~v~ie 266 (356)
T PRK14455 190 GLAIGARHITVSTSGI---APKIYDFADEGLQINLAISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRRVTFE 266 (356)
T ss_pred CcccCCCceEEEecCc---hHhHHHHHhcccCeeEEeccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 22 443443222 24567777877652 34556765 488887553 56888999999987765321113444
Q ss_pred EeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 279 TSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 279 t~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
.-+|=|+.++++|+.+..++++++++ .|.+-+|. |... .+. +...+++...+.++..+.|+...
T Consensus 267 y~lI~gvNDs~ed~~~La~ll~~l~~-~VnLIPyn-p~~~-~ky-~~ps~e~l~~f~~~L~~~gi~v~ 330 (356)
T PRK14455 267 YILLGGVNDQVEHAEELADLLKGIKC-HVNLIPVN-PVPE-RDY-VRTPKEDIFAFEDTLKKNGVNCT 330 (356)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCC-cEEEEecC-cCCC-CCC-cCCCHHHHHHHHHHHHHCCCcEE
Confidence 55555779999999999999999974 45554553 4221 121 12456778888888888888654
|
|
| >COG0535 Predicted Fe-S oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.8e-08 Score=97.13 Aligned_cols=192 Identities=18% Similarity=0.279 Sum_probs=140.6
Q ss_pred EeeeCCccCCCCcCCCCCCCCC-CCCCCcchHHHHHHHHHhcC-CcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCc
Q 017200 132 IMILGDTCTRGCRFCNVKTSRA-PPPPDPDEPTNVAEAIASWG-LDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM 209 (375)
Q Consensus 132 fm~i~d~C~~~C~FC~v~~~r~-~~~ld~eEi~~~a~al~~~G-~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i 209 (375)
.+.++..|+.+|.||....... +..++.++..+....+.+.| ...+.++||+.--.+| +.++++.+++. +.+
T Consensus 22 ~~~~t~~Cnl~C~~C~~~~~~~~~~el~~~~~~~~~~~~~~~g~~~~v~~~gGEPll~~d-----~~ei~~~~~~~-~~~ 95 (347)
T COG0535 22 GIELTNRCNLACKHCYAEAGKKLPGELSTEEDLRVIDELAELGEIPVVIFTGGEPLLRPD-----LLEIVEYARKK-GGI 95 (347)
T ss_pred EEeeccccCCcCcccccccCCCCccccCHHHHHHHHHHHHHcCCeeEEEEeCCCcccccc-----HHHHHHHHhhc-CCe
Confidence 3447999999999998887653 45688999998899999999 8888899987432233 67788877755 556
Q ss_pred EEEeecCCCCCChHHHHHHHHcCcccccccccchH-HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CC
Q 017200 210 LIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GE 287 (375)
Q Consensus 210 ~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GE 287 (375)
.+...+-...-+.+.++.++++|++.+...++..+ +.+..++..+..++..++.++.+++ .|+. ..+-+-. +.
T Consensus 96 ~~~~~TnG~~~~~~~~~~l~~~g~~~v~iSid~~~~e~hd~~rg~~g~~~~~~~~i~~~~~---~g~~--~~~~~~v~~~ 170 (347)
T COG0535 96 RVSLSTNGTLLTEEVLEKLKEAGLDYVSISLDGLDPETHDPIRGVKGVFKRAVEAIKNLKE---AGIL--VVINTTVTKI 170 (347)
T ss_pred EEEEeCCCccCCHHHHHHHHhcCCcEEEEEecCCChhhhhhhcCCCcHHHHHHHHHHHHHH---cCCe--eeEEEEEecC
Confidence 66555432112568999999999999999999865 7768888667899999999999998 4664 2222223 67
Q ss_pred CHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCC-ccccCCHHHHHHHH
Q 017200 288 TPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMP-VSEYITPEAFERYR 335 (375)
Q Consensus 288 T~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~-v~~~v~pe~~~~l~ 335 (375)
+.+++.+.++.++++|++.+.+.+++ |..++.. .....+|+..+.+.
T Consensus 171 n~~~l~~~~~~~~~~g~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~ 218 (347)
T COG0535 171 NYDELPEIADLAAELGVDELNVFPLI-PVGRGEENLELDLTPEEEELLL 218 (347)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEEEEe-ecccccccccccCCHHHHHHHH
Confidence 89999999999999999877775554 4333332 34456666444443
|
|
| >TIGR03278 methan_mark_10 putative methanogenesis marker protein 10 | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.7e-08 Score=100.43 Aligned_cols=211 Identities=13% Similarity=0.154 Sum_probs=138.4
Q ss_pred CCccCC---CCcCCCCCCCC-CCCCCCcchHHHHHHHHHh-c--CCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCC
Q 017200 136 GDTCTR---GCRFCNVKTSR-APPPPDPDEPTNVAEAIAS-W--GLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN 208 (375)
Q Consensus 136 ~d~C~~---~C~FC~v~~~r-~~~~ld~eEi~~~a~al~~-~--G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~ 208 (375)
-..|.. +|.||.-.... ....++++|+++.++.... . ....|.|+||.-+-+. .++.++++.+++..
T Consensus 29 c~~C~~~~~~C~yC~~~~~e~~g~~~t~~evl~ev~~d~~~~~~~~ggVtisGGGepl~~----~~l~eLl~~lk~~g-- 102 (404)
T TIGR03278 29 CKNCPPGTKGCDYCTRSVWEINGDFIPPQVVLGEVQTSLGFRTGRDTKVTISGGGDVSCY----PELEELTKGLSDLG-- 102 (404)
T ss_pred CCcCCCCCCCCCCCCchhhhhcCCcCCHHHHHHHHHHHHHHhcCCCCEEEEECCcccccC----HHHHHHHHHHHhCC--
Confidence 456744 88888443211 1224789999999888654 2 4688999998655443 46889999999853
Q ss_pred cEEEee-cC-CCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec
Q 017200 209 MLIEAL-VP-DFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 285 (375)
Q Consensus 209 i~Ie~l-~p-d~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl 285 (375)
+++.+. +. ....+.+.++.+++.|+|.+...+.+. +++++++.. ..+.+..++.++.+.+. .. +.+..-++=|+
T Consensus 103 i~taI~~TnG~~l~~~e~~~~L~~~gld~v~iSvka~dpe~h~kl~G-~~~a~~ILe~L~~L~e~-~~-v~~~ivlIPGi 179 (404)
T TIGR03278 103 LPIHLGYTSGKGFDDPEIAEFLIDNGVREVSFTVFATDPELRREWMK-DPTPEASLQCLRRFCES-CE-VHAASVIIPGV 179 (404)
T ss_pred CCEEEeCCCCcccCCHHHHHHHHHcCCCEEEEecccCCHHHHHHHhC-CCCHHHHHHHHHHHHhc-CC-EEEEEEEeCCc
Confidence 444332 33 223378999999999999999888876 599999873 44558899999998882 22 33344444444
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeeecCCCCCC-C----CC-Ccc---ccCCHHHHHHH-HHHHHHhhhhhhccchhhhhh
Q 017200 286 GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSK-R----HM-PVS---EYITPEAFERY-RALGMEMGFRYVASGPMVRSS 355 (375)
Q Consensus 286 GET~ee~~etl~~Lrelgvd~v~i~qYl~P~~-~----~~-~v~---~~v~pe~~~~l-~~~a~~~gf~~~~sgp~vrss 355 (375)
-.+ ++..+++++|.++++.-+.+..| ++.. . ++ +.. +..+.+++..+ ++++.+.++.. .--|+|.-|
T Consensus 180 ND~-eel~~ti~~L~~lg~~~V~L~~y-~~~g~~ky~lg~~~~~~~~~~~~~~e~~~~v~~~~~~~~i~~-~g~~~~~~~ 256 (404)
T TIGR03278 180 NDG-DVLWKTCADLESWGAKALILMRF-ANTEEQGLILGNAPIIPGIKPHTVSEFKNIVRETHKEFPIRV-TGTPLCDPE 256 (404)
T ss_pred cCc-HHHHHHHHHHHHCCCCEEEEEec-ccccccccccCCcCcccCCCCCCHHHHHHHHHHHHHHhCCcc-cCCcccccC
Confidence 333 44469999999999998888666 3211 1 11 111 12345666666 78888877653 344577777
Q ss_pred cchhH
Q 017200 356 YKVVG 360 (375)
Q Consensus 356 y~a~~ 360 (375)
||.
T Consensus 257 --ag~ 259 (404)
T TIGR03278 257 --TGA 259 (404)
T ss_pred --CCC
Confidence 665
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon. |
| >TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.6e-08 Score=100.17 Aligned_cols=185 Identities=18% Similarity=0.259 Sum_probs=118.6
Q ss_pred EEeeeCCccCCCCcCCCCCCCCC-CCCCCcchHHHHHHHHHh-cCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC--
Q 017200 131 TIMILGDTCTRGCRFCNVKTSRA-PPPPDPDEPTNVAEAIAS-WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK-- 206 (375)
Q Consensus 131 tfm~i~d~C~~~C~FC~v~~~r~-~~~ld~eEi~~~a~al~~-~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~-- 206 (375)
+.+.++++|+.+|+||.-+.... ...++.+++.+.++.+.+ .|+++|+||||+--..+| ..+.++++.+....
T Consensus 98 ~l~~~t~~Cn~~Cr~C~~~~~~~~~~~~~~~~~~~~i~~i~~~~~i~~VvltGGEPL~~~d---~~L~~ll~~l~~i~~~ 174 (321)
T TIGR03821 98 VLLIVTGGCAINCRYCFRRHFPYQENQPNKAQWKEALEYIAQHPEINEVILSGGDPLMAKD---HRLDWLLNLLEQIPHL 174 (321)
T ss_pred EEEEeCCCcCCcCcCCCCCCcCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCcccccCCc---hHHHHHHHHHHhCCCC
Confidence 45668999999999998654321 123556777777777774 499999999997433343 23556666665421
Q ss_pred CCcEEEe----ecCCCCCChHHHHHHHHcCcccccc-cccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceE--EE
Q 017200 207 PNMLIEA----LVPDFRGNNGCVREVAKSGLNVFAH-NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLT--KT 279 (375)
Q Consensus 207 p~i~Ie~----l~pd~~g~~e~l~~L~~aGldv~~h-nlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~t--kt 279 (375)
..++|.. +.|... +.+.++.|+++|+..+.. .++..+++. +...+.++.+++ .|+.+ .|
T Consensus 175 ~~iri~tr~~~~~p~ri-t~el~~~L~~~~~~~~~~~h~dh~~Ei~----------d~~~~ai~~L~~---~Gi~v~~qt 240 (321)
T TIGR03821 175 KRLRIHTRLPVVIPDRI-TSGLCDLLANSRLQTVLVVHINHANEID----------AEVADALAKLRN---AGITLLNQS 240 (321)
T ss_pred cEEEEecCcceeeHHHh-hHHHHHHHHhcCCcEEEEeeCCChHhCc----------HHHHHHHHHHHH---cCCEEEecc
Confidence 2345542 444433 678899999999776531 344334443 335567888887 56654 45
Q ss_pred eEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHH
Q 017200 280 SIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYR 335 (375)
Q Consensus 280 ~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~ 335 (375)
.++=|+-.+.+++.+.++.+.++|+.-..++++ .|+.. ... -.+++++..++.
T Consensus 241 vllkgiNDn~~~l~~L~~~l~~~gv~pyyl~~~-~p~gg-~~~-f~v~~~~~~~i~ 293 (321)
T TIGR03821 241 VLLRGVNDNADTLAALSERLFDAGVLPYYLHLL-DKVQG-AAH-FDVDDERARALM 293 (321)
T ss_pred eeeCCCCCCHHHHHHHHHHHHHcCCeeCccccc-CCCCC-ccc-ccCCHHHHHHHH
Confidence 555577789999999999999999987777443 56442 221 235565554443
|
Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc. |
| >PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-07 Score=95.29 Aligned_cols=202 Identities=15% Similarity=0.167 Sum_probs=133.3
Q ss_pred eeeCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHH----hc--C---CcEEEEEe-eeCCCCCcccHHHHHHHHHHH
Q 017200 133 MILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIA----SW--G---LDYVVITS-VDRDDLADQGSGHFAQTVRKL 202 (375)
Q Consensus 133 m~i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~----~~--G---~~eIvLTs-gdr~dl~d~G~~~~~~lir~I 202 (375)
+.-+.+|+.+|.||+-....-...++++|+++.+.... +. | ++.|+++| |+. -+ . .+.+.+.++.+
T Consensus 106 vSsq~GC~~~C~FC~tg~~g~~rnlt~~EI~~qv~~~~~~~~~~g~g~~~i~nIvfmGmGEP-Ll-n--~~~v~~~l~~l 181 (354)
T PRK14460 106 LSCQVGCAMGCTFCSTGTMGFERNMTMGEILGQVLVAREHLGDNGPDHPILRNLVFMGMGEP-LL-N--LDEVMRSLRTL 181 (354)
T ss_pred eeCCCCcCCCCccCCCCCCCCCcCCCHHHHHHHHHHHHHHHhhccCCCcceeEEEEecCCcc-cC-C--HHHHHHHHHHH
Confidence 33478999999999865432123589999999884332 22 3 78999999 543 22 1 45566777777
Q ss_pred HHhC----CCcEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCC--CCCHHHHHHHHHHHHHhCCCCc
Q 017200 203 KELK----PNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDH--RANFKQSLDVLMMAKDYVPAGT 275 (375)
Q Consensus 203 k~~~----p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r--~~s~~~~l~vl~~ak~~~p~Gl 275 (375)
++.. +..++.+.+-. ..+.++.|.++|+..++..+++. ++.++++.+. +++.++.++.++.........+
T Consensus 182 ~~~~Gl~~~~r~itvsT~G---~~~~i~~L~~~~l~~L~iSLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~~v 258 (354)
T PRK14460 182 NNEKGLNFSPRRITVSTCG---IEKGLRELGESGLAFLAVSLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTRERV 258 (354)
T ss_pred hhhhccCCCCCeEEEECCC---ChHHHHHHHhCCCcEEEEeCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcCCeE
Confidence 6532 11245555533 36778999999987777778765 4999988742 4677888877765433221224
Q ss_pred eEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhh
Q 017200 276 LTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (375)
Q Consensus 276 ~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (375)
.+..-+|=|+.++++|+.+..++++.+++ .|.+-+|- |. .+.+. +...+++.+.+.++..+.|+..
T Consensus 259 ~iey~LI~GvNDs~ed~~~l~~~l~~~~~-~VnLIpyn-~~-~g~~y-~~p~~e~v~~f~~~l~~~Gi~v 324 (354)
T PRK14460 259 TFEYLLLGGVNDSLEHARELVRLLSRTKC-KLNLIVYN-PA-EGLPY-SAPTEERILAFEKYLWSKGITA 324 (354)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcCCC-cEEEEcCC-CC-CCCCC-CCCCHHHHHHHHHHHHHCCCeE
Confidence 55666677889999999999999999876 35555553 31 12222 2345677888888877777754
|
|
| >PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.1e-07 Score=93.04 Aligned_cols=205 Identities=10% Similarity=0.042 Sum_probs=133.8
Q ss_pred EEEeeeCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHhc-CCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHHhCC
Q 017200 130 ATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW-GLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELKP 207 (375)
Q Consensus 130 atfm~i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~~-G~~eIvLTs-gdr~dl~d~G~~~~~~lir~Ik~~~p 207 (375)
.-.+-.+.||+.+|.||.-........++.+||+..+..+.+. +++.|+++| |+.- . +.+.+.+.++.++....
T Consensus 104 t~cvSsQvGC~~~C~FC~Tg~~g~~rnLt~~EIl~Qv~~~~~~~~i~nIvfmGmGEPL--~--N~d~vi~al~~l~~~~g 179 (345)
T PRK14466 104 TLCVSSQVGCKMNCLFCMTGKQGFTGNLTAAQILNQIYSLPERDKLTNLVFMGMGEPL--D--NLDEVLKALEILTAPYG 179 (345)
T ss_pred EEEEEcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhhhhcCCCCeEEEeeeCcCc--c--cHHHHHHHHHHHhhccc
Confidence 3345557899999999996653222348999999999887543 689999999 6532 1 14456666666654321
Q ss_pred ----CcEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcC--CCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017200 208 ----NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (375)
Q Consensus 208 ----~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~--r~~s~~~~l~vl~~ak~~~p~Gl~tkt~ 280 (375)
.-+|.+.+-. ....+..+.+...-.++..+.+. +++++++-| ++++.++-++.++...+....-+.+.--
T Consensus 180 ~~~s~r~ItVsT~G---~~~~i~~l~~~~~~~LavSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~ 256 (345)
T PRK14466 180 YGWSPKRITVSTVG---LKKGLKRFLEESECHLAISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYI 256 (345)
T ss_pred cCcCCceEEEEcCC---CchHHHHHhhccCcEEEEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEE
Confidence 1255555432 23335555543333345556654 589999886 4577899888888865543332455666
Q ss_pred EEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhh
Q 017200 281 IMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (375)
Q Consensus 281 imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (375)
+|=|+-.++||..+..+.++.++ ..|.+-+|. |.. +.+ .+.+..++.+.+.++-.+.|+..
T Consensus 257 Li~gvND~~e~a~~L~~ll~~~~-~~VNLIp~N-p~~-~~~-~~~~s~~~~~~F~~~L~~~gi~~ 317 (345)
T PRK14466 257 VFKGLNDSLKHAKELVKLLRGID-CRVNLIRFH-AIP-GVD-LEGSDMARMEAFRDYLTSHGVFT 317 (345)
T ss_pred EeCCCCCCHHHHHHHHHHHcCCC-ceEEEEecC-CCC-CCC-CcCCCHHHHHHHHHHHHHCCCcE
Confidence 66688999999999999999887 456666664 321 222 22345677888888777777644
|
|
| >PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-07 Score=94.33 Aligned_cols=203 Identities=14% Similarity=0.139 Sum_probs=131.7
Q ss_pred EeeeCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHhc------CCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHH
Q 017200 132 IMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW------GLDYVVITS-VDRDDLADQGSGHFAQTVRKLKE 204 (375)
Q Consensus 132 fm~i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~~------G~~eIvLTs-gdr~dl~d~G~~~~~~lir~Ik~ 204 (375)
.+..+.+|+.+|.||.-....-...++++|+++.+..+... .++.|+++| |+--. . .+.+.+.++.+..
T Consensus 96 cvSsq~GC~l~C~fC~tg~~g~~r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~GmGEPll--n--~~~v~~~i~~l~~ 171 (343)
T PRK14468 96 CVSTMVGCPAGCAFCATGAMGFGRNLTAAEILDQVLAVAGHEGISPREIRNVVLMGMGEPLL--N--YENVLKAARIMLH 171 (343)
T ss_pred EEEecCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcCcCcCCccEEEEeccCcccc--C--HHHHHHHHHHhcc
Confidence 34568999999999986543222358999999988765443 267999998 65321 1 3445555555532
Q ss_pred hCC-Cc---EEEeecCCCCCChHHHHHHHHcCccc-ccccccch-HHHHHHhcC--CCCCHHHHHHHHHHHHHhCCCCce
Q 017200 205 LKP-NM---LIEALVPDFRGNNGCVREVAKSGLNV-FAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTL 276 (375)
Q Consensus 205 ~~p-~i---~Ie~l~pd~~g~~e~l~~L~~aGldv-~~hnlEtv-~rl~~~mr~--r~~s~~~~l~vl~~ak~~~p~Gl~ 276 (375)
... ++ +|.+.+- |....++.|.++++++ +...+.+. ++.++++.| ++++.++-++.++...+....-+.
T Consensus 172 ~~g~~l~~r~itvST~---G~~~~i~~L~~~~l~~~LaiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~~~~~~~~~~V~ 248 (343)
T PRK14468 172 PQALAMSPRRVTLSTV---GIPKGIRRLAEEDLGVRLALSLHAPDEETRQRIIPTAHRYSIAEIMAAVRHYQAVTGRRVT 248 (343)
T ss_pred cccccccCceEEEECC---CChHHHHHHHHhCcCcEEEEEcCCCCHHHHHHhccccccCCHHHHHHHHHHHHHhcCCeEE
Confidence 110 11 3444332 2356788899988873 66667765 488888874 356889999998766554322144
Q ss_pred EEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhh
Q 017200 277 TKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (375)
Q Consensus 277 tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (375)
+..-+|=|+-.++||+.+..+.++++.+ .|.+-+|. |.. ... .+..++++.+.+.++-.+.|+..
T Consensus 249 ieyvLI~GvNDs~e~~~~L~~ll~~~~~-~VnLIPyn-p~~-~~~-~~~ps~e~i~~f~~~L~~~Gi~v 313 (343)
T PRK14468 249 LEYTMLKGVNDHLWQAELLADLLRGLVS-HVNLIPFN-PWE-GSP-FQSSPRAQILAFADVLERRGVPV 313 (343)
T ss_pred EEEEEeCCCcCCHHHHHHHHHHHhcCCc-EEEEEcCC-CCC-CCC-CCCCCHHHHHHHHHHHHHCCCeE
Confidence 5566666889999999999999999865 45565664 311 111 22345677888887777777754
|
|
| >PRK13762 tRNA-modifying enzyme; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.4e-08 Score=95.56 Aligned_cols=206 Identities=12% Similarity=0.165 Sum_probs=131.2
Q ss_pred CccCCCCcCCCCCCCCC--C-----CCCCcchHHHHHHHHHh---c---C--------------CcEEEEEeeeCCCCCc
Q 017200 137 DTCTRGCRFCNVKTSRA--P-----PPPDPDEPTNVAEAIAS---W---G--------------LDYVVITSVDRDDLAD 189 (375)
Q Consensus 137 d~C~~~C~FC~v~~~r~--~-----~~ld~eEi~~~a~al~~---~---G--------------~~eIvLTsgdr~dl~d 189 (375)
.+|+.+|.||.-+.... . ...+++||++.+..... . | .+++.|+++--|-+.
T Consensus 66 ~~C~~rC~fC~r~~~~~~~~~~~~~~~~~peeiv~~~~~~~~~~i~g~~g~~~v~~~~~~ea~~~~~v~iSl~GEPlL~- 144 (322)
T PRK13762 66 AWCNQRCLFCWRPLEEDVGLELKEPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDREKFEEAMEPKHVAISLSGEPTLY- 144 (322)
T ss_pred HHHhccCceeeccCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCHHHhhhccCCCEEEEeCCccccch-
Confidence 46999999999775321 1 12577888777655421 1 3 357888855223221
Q ss_pred ccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccchH-HHHHHhcC--CCCCHHHHHHHHHH
Q 017200 190 QGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRD--HRANFKQSLDVLMM 266 (375)
Q Consensus 190 ~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~mr~--r~~s~~~~l~vl~~ 266 (375)
.++.++++.+++. ++.+.+.+-.. .++.++.| ++++|.+...++..+ +.|++++. .+.+++..++.|+.
T Consensus 145 ---p~l~eli~~~k~~--Gi~~~L~TNG~--~~e~l~~L-~~~~d~i~VSLda~~~e~~~~i~~~~~~~~~~~vl~~L~~ 216 (322)
T PRK13762 145 ---PYLPELIEEFHKR--GFTTFLVTNGT--RPDVLEKL-EEEPTQLYVSLDAPDEETYKKINRPVIPDAWERILETLEL 216 (322)
T ss_pred ---hhHHHHHHHHHHc--CCCEEEECCCC--CHHHHHHH-HhcCCEEEEEccCCCHHHHHHHhCCCCCCcHHHHHHHHHH
Confidence 2488899999875 46665555333 36788888 778999888888764 89999973 24689999999999
Q ss_pred HHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCC-C-CCCccccCCHHHHHHHHHHHHHh-hh
Q 017200 267 AKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSK-R-HMPVSEYITPEAFERYRALGMEM-GF 343 (375)
Q Consensus 267 ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~-~-~~~v~~~v~pe~~~~l~~~a~~~-gf 343 (375)
+++.... +.+.+.++-| .++.+..+..+++++++++.|-+-+|+.-+. + .+.....+++++...+.+...+. |+
T Consensus 217 l~~~~~~-~~ir~tlv~g--~Nd~e~~~~a~l~~~~~~~~Iel~~y~~~G~~k~~l~~~~~p~~eev~~~~~~l~~~~~~ 293 (322)
T PRK13762 217 LPSKKTR-TVIRITLVKG--YNMHDPEGFAKLIERANPDFVEVKAYMHVGYSRNRLTRDNMPSHEEVREFAKELAEYTGY 293 (322)
T ss_pred HHhCCCC-EEEEEEEECC--cCccHHHHHHHHHHHcCCCEEEEECCeECCCccccccccCCcCHHHHHHHHHHHHHhcCC
Confidence 9984211 3345445444 4555555888888999999998877752211 1 12223345666666665544443 66
Q ss_pred hhhccchhhhh
Q 017200 344 RYVASGPMVRS 354 (375)
Q Consensus 344 ~~~~sgp~vrs 354 (375)
....-.|..|-
T Consensus 294 ~i~~~~~~s~~ 304 (322)
T PRK13762 294 EILDESEPSRV 304 (322)
T ss_pred eEEecCCCceE
Confidence 54444444443
|
|
| >TIGR00238 KamA family protein | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.4e-08 Score=98.30 Aligned_cols=169 Identities=12% Similarity=0.183 Sum_probs=113.9
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCC-CCCCcchHHHHHHHHHh-cCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIAS-WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK 206 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~-~~ld~eEi~~~a~al~~-~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~ 206 (375)
...++.++++|+.+|+||..+..... .....+++.+.++.+.+ .|+++|+||||+--.++| ..+.++++.|++.
T Consensus 113 ~rvll~~T~gCn~~C~yC~~~~~~~~~~~~~~~~~~~~i~~i~~~~~i~eV~lsGGDPLl~~d---~~L~~ll~~L~~i- 188 (331)
T TIGR00238 113 NRALFLVKGGCAVNCRYCFRRHFPYKENPGNKKKWQKALDYIAEHPEIIEILISGGDPLMAKD---HELEWLLKRLEEI- 188 (331)
T ss_pred CcEEEEeCCCCCCCCcCCCCCCcCCCCCCccHHHHHHHHHHHHhCCCcCEEEEECCccccCCH---HHHHHHHHHHHhc-
Confidence 34567789999999999987543211 11235777777777764 589999999998544443 3467778777753
Q ss_pred CC---cEEEeecCCCC---CChHHHHHHHHcCcccccccccchH-HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCc--eE
Q 017200 207 PN---MLIEALVPDFR---GNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGT--LT 277 (375)
Q Consensus 207 p~---i~Ie~l~pd~~---g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl--~t 277 (375)
|. +++..-+|... -+++.++.|+++|+..+-..+...+ ++ .++..+.++.+++ .|+ .+
T Consensus 189 ~~~~~IRi~tr~~~~~P~rit~el~~~L~~~~~~~~~vsh~nh~~Ei----------~~~~~~ai~~L~~---aGi~v~~ 255 (331)
T TIGR00238 189 PHLVRLRIGTRLPVVIPQRITDELCELLASFELQLMLVTHINHCNEI----------TEEFAEAMKKLRT---VNVTLLN 255 (331)
T ss_pred CCccEEEeecCCCccCchhcCHHHHHHHHhcCCcEEEEccCCChHhC----------CHHHHHHHHHHHH---cCCEEEe
Confidence 33 45554444321 1678899999999876543322222 22 2455677777777 455 45
Q ss_pred EEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCC
Q 017200 278 KTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRP 315 (375)
Q Consensus 278 kt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P 315 (375)
.+.++=|.-.+.+++.+.++.|.++|+.-..+.++ .|
T Consensus 256 qtvLl~gvnD~~~~l~~L~~~l~~~gV~pyyl~~~-~~ 292 (331)
T TIGR00238 256 QSVLLRGVNDRAQILAKLSIALFKVGIIPYYLHYL-DK 292 (331)
T ss_pred ecceECCcCCCHHHHHHHHHHHhhcCeecCeecCc-CC
Confidence 77778888888899999999999999876666443 45
|
Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein. |
| >PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.4e-07 Score=90.87 Aligned_cols=205 Identities=11% Similarity=0.134 Sum_probs=134.7
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHhc---CCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHH
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW---GLDYVVITS-VDRDDLADQGSGHFAQTVRKLKE 204 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~~---G~~eIvLTs-gdr~dl~d~G~~~~~~lir~Ik~ 204 (375)
+..++.-+-||+.+|.||.-....-...++++|++..+..+.+. +++.|+++| |+.-. . .+.+.+.++.++.
T Consensus 101 ~t~cvSsqvGC~~~C~FC~tg~~g~~rnlt~~EIv~qv~~~~~~~~~~~~~IvfmGmGEPll--n--~~~v~~~i~~l~~ 176 (345)
T PRK14457 101 LTVCVSSQVGCPMACDFCATGKGGLKRSLKAHEIVDQVLTVQEDMQRRVSHVVFMGMGEPLL--N--IDEVLAAIRCLNQ 176 (345)
T ss_pred CEEEEeCCCCCCCcCCcCCCCCCCCccccCHHHHHHHHHHHHHHhcCCCCEEEEEecCcccc--C--HHHHHHHHHHHhc
Confidence 44556567899999999987653222348999999988776543 689999999 65321 1 3445666666654
Q ss_pred hCCCc---EEEeecCCCCCChHHHHHHHHcCc------c-cccccccch-HHHHHHhcC--CCCCHHHHHHHHHH-HHHh
Q 017200 205 LKPNM---LIEALVPDFRGNNGCVREVAKSGL------N-VFAHNIETV-EELQSAVRD--HRANFKQSLDVLMM-AKDY 270 (375)
Q Consensus 205 ~~p~i---~Ie~l~pd~~g~~e~l~~L~~aGl------d-v~~hnlEtv-~rl~~~mr~--r~~s~~~~l~vl~~-ak~~ 270 (375)
.. ++ +|.+++- |..+.++.|.+.++ + .+...+... +++++++.| +++..++.++.++. +.+.
T Consensus 177 ~~-~i~~r~itvST~---G~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~ 252 (345)
T PRK14457 177 DL-GIGQRRITVSTV---GVPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAIT 252 (345)
T ss_pred cc-CCccCceEEECC---CchhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHh
Confidence 32 33 5555542 34556888887762 3 244455554 588888875 46777777766654 4443
Q ss_pred CCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 271 VPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 271 ~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
+.-+.+..-+|=|+-.++|++.+..++++.+++ .|.+-+| .|.. ..+. +...+++.+.+.++..+.|+...
T Consensus 253 -gr~I~iey~LIpGvNDs~e~a~~La~~l~~l~~-~VnLIPy-np~~-~~~~-~~ps~e~i~~f~~~L~~~Gi~vt 323 (345)
T PRK14457 253 -GRRVSFEYILLGGVNDLPEHAEELANLLRGFQS-HVNLIPY-NPID-EVEF-QRPSPKRIQAFQRVLEQRGVAVS 323 (345)
T ss_pred -CCEEEEEEEEECCcCCCHHHHHHHHHHHhcCCC-eEEEecC-CCCC-CCCC-CCCCHHHHHHHHHHHHHCCCeEE
Confidence 222667777888999999999999999999876 4666556 2421 1122 22456778888888888787653
|
|
| >PRK13758 anaerobic sulfatase-maturase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.3e-07 Score=90.92 Aligned_cols=192 Identities=8% Similarity=0.105 Sum_probs=124.0
Q ss_pred eeeCCccCCCCcCCCCCCCCC------CCCCCcchHHHHHHHHHhc--CCcEEEEEeeeCCCCCcccHHHHHHHHHHHHH
Q 017200 133 MILGDTCTRGCRFCNVKTSRA------PPPPDPDEPTNVAEAIASW--GLDYVVITSVDRDDLADQGSGHFAQTVRKLKE 204 (375)
Q Consensus 133 m~i~d~C~~~C~FC~v~~~r~------~~~ld~eEi~~~a~al~~~--G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~ 204 (375)
+..++.|+.+|.||....... ...++.+.+...++.+.+. +...|.+|||+.--.+ .+.+.++++.+++
T Consensus 9 ~~~t~~CNl~C~yC~~~~~~~~~~~~~~~~m~~~~~~~~i~~~~~~~~~~~~i~~~GGEPll~~---~~~~~~~~~~~~~ 85 (370)
T PRK13758 9 KPASSGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMVKRVLNEAEGHCSFAFQGGEPTLAG---LEFFEELMELQRK 85 (370)
T ss_pred ecCCCCcCCCCcccCCcCccccccccccCCCCHHHHHHHHHHHHhccCCceEEEEECCccccCC---hHHHHHHHHHHHH
Confidence 334589999999998764211 1236777777777766554 4567899998632112 2345677777766
Q ss_pred hC-CCcE--EEeecCCCCCChHHHHHHHHcCcccccccccchHHHHHHhcC---CCCCHHHHHHHHHHHHHhCCCCceEE
Q 017200 205 LK-PNML--IEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRD---HRANFKQSLDVLMMAKDYVPAGTLTK 278 (375)
Q Consensus 205 ~~-p~i~--Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~---r~~s~~~~l~vl~~ak~~~p~Gl~tk 278 (375)
.. .++. +.+.+-...-+++.++.|++.++ .+...++..++++..+|. .+.+|+..++.++.+++. |+.+.
T Consensus 86 ~~~~~~~~~~~i~TNG~ll~~~~~~~l~~~~~-~v~iSlDg~~~~hd~~R~~~~g~~~f~~v~~~i~~l~~~---~~~~~ 161 (370)
T PRK13758 86 HNYKNLKIYNSLQTNGTLIDESWAKFLSENKF-LVGLSMDGPKEIHNLNRKDCCGLDTFSKVERAAELFKKY---KVEFN 161 (370)
T ss_pred hccCCCeEEEEEEecCEecCHHHHHHHHHcCc-eEEEeecCCHHHhccccCCCCCCccHHHHHHHHHHHHHh---CCCce
Confidence 42 2333 34444322226788899998885 788888887777777762 367899999999999984 55555
Q ss_pred EeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccc-cCCHHHHH
Q 017200 279 TSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSE-YITPEAFE 332 (375)
Q Consensus 279 t~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~-~v~pe~~~ 332 (375)
..+++.- .+.+++.+.++.++++|++.+.+...+-|...+..... .+.|+++.
T Consensus 162 i~~~v~~-~n~~~l~~i~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~ 215 (370)
T PRK13758 162 ILCVVTS-NTARHVNKIYKYFKEKDFKFLQFINCLDPLYEEKGKYNYSLKPKDYT 215 (370)
T ss_pred EEEEecc-ccccCHHHHHHHHHHcCCCeEeeeeccCccccccCCCcCccCHHHHH
Confidence 5555543 46778888899999999988766444445333322222 24565443
|
|
| >COG2100 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-07 Score=92.57 Aligned_cols=200 Identities=20% Similarity=0.268 Sum_probs=134.3
Q ss_pred CCccCCCCcCCCCCCC---CCCC---CCCcchHHHHHHHHHhc--CCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC
Q 017200 136 GDTCTRGCRFCNVKTS---RAPP---PPDPDEPTNVAEAIASW--GLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (375)
Q Consensus 136 ~d~C~~~C~FC~v~~~---r~~~---~ld~eEi~~~a~al~~~--G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p 207 (375)
+.+|+.+|-||++..+ |... -.|+|-+++-.+.+++. +.-|.+|-|+-.+-+ .-|+.++++++++. |
T Consensus 114 ~tgCnlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEaHlDGqGEP~l----YP~l~~lVqalk~~-~ 188 (414)
T COG2100 114 STGCNLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEAHLDGQGEPLL----YPHLVDLVQALKEH-K 188 (414)
T ss_pred CccccceeEEEeccCCcccceeccceEecHHHHHHHHHHHHhhhCCCeEEEecCCCCCcc----chhHHHHHHHHhcC-C
Confidence 5799999999999753 2211 26888777766666543 234888888755543 24789999999876 5
Q ss_pred CcEEEee-cCCCCCChHHHHHHHHcCcccccccccchH-HHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEe
Q 017200 208 NMLIEAL-VPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRD-HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG 284 (375)
Q Consensus 208 ~i~Ie~l-~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~mr~-r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvG 284 (375)
++.+-++ +-...-+.+.+++|.+||+|.++..++..| ++-+.+.+ +.|+.+..+++.+.+.+ .|+.+-..=++=
T Consensus 189 ~v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~---a~idvlIaPv~l 265 (414)
T COG2100 189 GVEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIAN---AGIDVLIAPVWL 265 (414)
T ss_pred CceEEEEeeCceeccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHh---CCCCEEEeeeec
Confidence 5543322 211111789999999999999999998776 66666653 35888899999999988 455443333333
Q ss_pred cCCCHHHHHHHHHHHHHcCC----cEEeeecCCCCCCCC-CC-ccccCCHHHH-HHHHHHHHHhhhh
Q 017200 285 CGETPDQVVSTMEKVRAAGV----DVMTFGQYMRPSKRH-MP-VSEYITPEAF-ERYRALGMEMGFR 344 (375)
Q Consensus 285 lGET~ee~~etl~~Lrelgv----d~v~i~qYl~P~~~~-~~-v~~~v~pe~~-~~l~~~a~~~gf~ 344 (375)
.|-+|+|+...+.+.+++|. -.++| |-+.|.+.+ .| +.+-++-.+| ..|+++-.+.|..
T Consensus 266 PG~ND~E~~~iIe~A~~iGaGkk~p~lgi-Qkyipyk~GRkp~~~k~~~fkeFYrwLrelEketg~k 331 (414)
T COG2100 266 PGVNDDEMPKIIEWAREIGAGKKWPPLGI-QKYIPYKFGRKPVIAKVWPFKEFYRWLRELEKETGVK 331 (414)
T ss_pred CCcChHHHHHHHHHHHHhCCCCCCCCcce-EEeeeecccCCccccccCcHHHHHHHHHHHHHHhCCC
Confidence 47789999999999999986 24555 444453322 22 2333334555 4456777777876
|
|
| >PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.5e-07 Score=89.35 Aligned_cols=193 Identities=9% Similarity=0.012 Sum_probs=129.1
Q ss_pred eeeCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHhc---CCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHHh---
Q 017200 133 MILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW---GLDYVVITS-VDRDDLADQGSGHFAQTVRKLKEL--- 205 (375)
Q Consensus 133 m~i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~~---G~~eIvLTs-gdr~dl~d~G~~~~~~lir~Ik~~--- 205 (375)
+--+.||+.+|.||.-....-...++.+|+++.+..+.+. .++.||++| |..-.- .+.+.+.++.++..
T Consensus 101 vSsq~GC~l~C~fC~tg~~g~~r~l~~~EI~~qi~~~~~~~~~~i~nIvfmGmGEPllN----~d~v~~~i~~l~~~~~~ 176 (336)
T PRK14470 101 LSSQAGCALGCAFCATGKLGLDRSLRSWEIVAQLLAVRADSERPITGVVFMGQGEPFLN----YDEVLRAAYALCDPAGA 176 (336)
T ss_pred EeCCCCcCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEEecCccccC----HHHHHHHHHHHhCcccc
Confidence 3347899999999998764322347888888877665443 589999999 753221 23466667777642
Q ss_pred -CCCcEEEeecCCCCCChHHHHHHHHcCc-ccccccccchH-HHHHHhcC--CCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017200 206 -KPNMLIEALVPDFRGNNGCVREVAKSGL-NVFAHNIETVE-ELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (375)
Q Consensus 206 -~p~i~Ie~l~pd~~g~~e~l~~L~~aGl-dv~~hnlEtv~-rl~~~mr~--r~~s~~~~l~vl~~ak~~~p~Gl~tkt~ 280 (375)
.+..+|.+.+-. ....+..+.+.++ +.++..+++.+ +.+.++.| ++++.++.++.++...+.. .-+.+.--
T Consensus 177 ~~~~~~ItVsTnG---~~p~i~~l~~~~~~~~LaiSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~~~-rri~ieyv 252 (336)
T PRK14470 177 RIDGRRISISTAG---VVPMIRRYTAEGHKFRLCISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAALR-GRVTLEYV 252 (336)
T ss_pred ccCCCceEEEecC---ChHHHHHHHhcCCCceEEEecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhC-CCeEEEEE
Confidence 134566666533 2346677777776 66777788764 88888874 3578999999998888752 22455666
Q ss_pred EEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHH
Q 017200 281 IMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALG 338 (375)
Q Consensus 281 imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a 338 (375)
+|-|+..++||+.+..++++.+.+.+ .+-+|..|. . .+ +..+.++.+.+.++-
T Consensus 253 LI~GvNDseeda~~La~llk~l~~~v-nlI~~N~~~-~--~~-~~p~~~~i~~f~~~l 305 (336)
T PRK14470 253 MISGVNVGEEDAAALGRLLAGIPVRL-NPIAVNDAT-G--RY-RPPDEDEWNAFRDAL 305 (336)
T ss_pred EEecccCCHHHHHHHHHHHhcCCCeE-EEeccCCCC-C--Cc-cCCCHHHHHHHHHHH
Confidence 77788999999999999999887644 333664332 1 22 223455666666665
|
|
| >PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.9e-07 Score=90.21 Aligned_cols=201 Identities=15% Similarity=0.153 Sum_probs=131.8
Q ss_pred eCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHh---c------C--CcEEEEEe-eeCCCCCcccHHHHHHHHHHH
Q 017200 135 LGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIAS---W------G--LDYVVITS-VDRDDLADQGSGHFAQTVRKL 202 (375)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~---~------G--~~eIvLTs-gdr~dl~d~G~~~~~~lir~I 202 (375)
.+.||+.+|.||+-....-...++++||+..+..+.+ . | ++.||+.| |+.-. ..+.+.+.++.|
T Consensus 127 sQvGC~m~C~FCatg~~g~~RnLt~~EIv~Qv~~~~~~~~~~~~~~~~~~i~nVvfmGmGEPLl----N~d~V~~~i~~l 202 (373)
T PRK14459 127 SQAGCGMACPFCATGQGGLTRNLSTAEIVEQVRAAARALRDGEVPGGPGRLSNVVFMGMGEPLA----NYKRVVAAVRRI 202 (373)
T ss_pred ecCCCCCcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHhhhcccccCCCceeEEEEecCCcchh----hHHHHHHHHHHH
Confidence 4789999999998654321234899999998876652 1 2 67899999 65321 145567777777
Q ss_pred HHhCC---Cc---EEEeecCCCCCChHHHHHHHHcCcc-cccccccchH-HHHHHhcC--CCCCHHHHHHHHHHHHHhCC
Q 017200 203 KELKP---NM---LIEALVPDFRGNNGCVREVAKSGLN-VFAHNIETVE-ELQSAVRD--HRANFKQSLDVLMMAKDYVP 272 (375)
Q Consensus 203 k~~~p---~i---~Ie~l~pd~~g~~e~l~~L~~aGld-v~~hnlEtv~-rl~~~mr~--r~~s~~~~l~vl~~ak~~~p 272 (375)
++..| ++ +|.+.+-. -...+..|.+.+++ .++..+.+.+ ++++++-| ++++.++-++.++...+...
T Consensus 203 ~~~~~~g~gis~r~ITvST~G---l~~~i~~la~~~l~~~LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~g 279 (373)
T PRK14459 203 TAPAPEGLGISARNVTVSTVG---LVPAIRKLADEGLPVTLAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATG 279 (373)
T ss_pred hCcccccCCccCCEEEEECcC---chhHHHHHHHhcCCeEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhC
Confidence 65211 23 55555432 24568889998887 5666677664 99999885 46888888888766654221
Q ss_pred CCceEEEeEEEecCCCHHHHHHHHHHHHHcC--CcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhh
Q 017200 273 AGTLTKTSIMLGCGETPDQVVSTMEKVRAAG--VDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (375)
Q Consensus 273 ~Gl~tkt~imvGlGET~ee~~etl~~Lrelg--vd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (375)
.-+.+.--+|=|+-.++||..+..+.++.++ ...|.+-+|. |.. ..+. +....+..+.+.++-.+.|+..
T Consensus 280 rrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIpyN-p~~-~~~y-~~~~~~~~~~F~~~L~~~gi~~ 351 (373)
T PRK14459 280 RRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIPLN-PTP-GSKW-TASPPEVEREFVRRLRAAGVPC 351 (373)
T ss_pred CEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEccC-CCC-CCCC-cCCCHHHHHHHHHHHHHCCCeE
Confidence 1134455566688999999999999999884 3456676664 421 1221 1233456667777767777654
|
|
| >TIGR00048 radical SAM enzyme, Cfr family | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.2e-07 Score=90.66 Aligned_cols=203 Identities=13% Similarity=0.148 Sum_probs=130.2
Q ss_pred eeeCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHh------cCCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHHh
Q 017200 133 MILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIAS------WGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKEL 205 (375)
Q Consensus 133 m~i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~------~G~~eIvLTs-gdr~dl~d~G~~~~~~lir~Ik~~ 205 (375)
+.-+.||+.+|.||+.........++.+|+++.+..+.. .+++.|++.| |+.- +- .+.+.+.++.+++.
T Consensus 109 VSsQ~GC~l~C~fC~t~~~g~~r~lt~~Eiv~qv~~~~~~~~~~~~~v~nVvfmGmGEPL-ln---~d~v~~~l~~l~~~ 184 (355)
T TIGR00048 109 VSSQVGCALGCTFCATAKGGFNRNLEASEIIGQVLRVQKINNETGERVSNVVFMGMGEPL-LN---LNEVVKAMEIMNDD 184 (355)
T ss_pred EecCCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCeeEEEEecCCchh-hC---HHHHHHHHHHhhcc
Confidence 334679999999999765432234889999987765432 3578899999 5431 11 34566777777643
Q ss_pred CC-Cc---EEEeecCCCCCChHHHHHHHHcCccc-ccccccchH-HHHHHhcC--CCCCHHHHHHHHHHHHHhCCCCceE
Q 017200 206 KP-NM---LIEALVPDFRGNNGCVREVAKSGLNV-FAHNIETVE-ELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLT 277 (375)
Q Consensus 206 ~p-~i---~Ie~l~pd~~g~~e~l~~L~~aGldv-~~hnlEtv~-rl~~~mr~--r~~s~~~~l~vl~~ak~~~p~Gl~t 277 (375)
.. ++ ++.+.+-. ..+.+..|.+.++++ +...+...+ +.++++.| +++++++-++.++...+..+.-+.+
T Consensus 185 ~g~~i~~~~itisT~G---~~~~i~~l~~~~l~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~Vti 261 (355)
T TIGR00048 185 FGLGISKRRITISTSG---VVPKIDILADKMLQVALAISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTF 261 (355)
T ss_pred cccCcCCCeEEEECCC---chHHHHHHHHhCCCcEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEE
Confidence 21 23 55555433 346788898888884 566677654 88888753 4677888887776543322222444
Q ss_pred EEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 278 KTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 278 kt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
..-+|=|+-.++||+.+..++++.+++ .|.+.+|- |.. ..+.. ...+++.+.+.++-.+.|+...
T Consensus 262 eyvLI~GvNDs~e~a~~La~llk~l~~-~VnLIPyn-p~~-~~~~~-~ps~e~i~~f~~~L~~~gi~v~ 326 (355)
T TIGR00048 262 EYVLLDGVNDQVEHAEELAELLKGTKC-KVNLIPWN-PFP-EADYE-RPSNEQIDRFAKTLMSYGFTVT 326 (355)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCC-ceEEEecc-cCC-CCCCC-CCCHHHHHHHHHHHHHCCCeEE
Confidence 555555888999999999999999875 34444442 311 11221 2356777778877777787654
|
A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains. |
| >PRK14453 chloramphenicol/florfenicol resistance protein; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.6e-07 Score=89.23 Aligned_cols=203 Identities=11% Similarity=0.105 Sum_probs=127.1
Q ss_pred eeCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHhcC--CcEEEEEe-eeCCCCCcccHHHHHHHHHHHHHhC-CC-
Q 017200 134 ILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWG--LDYVVITS-VDRDDLADQGSGHFAQTVRKLKELK-PN- 208 (375)
Q Consensus 134 ~i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~~G--~~eIvLTs-gdr~dl~d~G~~~~~~lir~Ik~~~-p~- 208 (375)
.-+.||+.+|.||+.....-...++.+||++.+..+...| ++.|+++| |+.-... .+.+.|+.|++.. .+
T Consensus 105 ssqvGC~~~C~FC~tg~~g~~rnLt~~EIv~qv~~~~~~~~~i~~IvfmGmGEPLln~-----~v~~~i~~l~~~~~~~~ 179 (347)
T PRK14453 105 SSQCGCGFGCRFCATGSIGLKRNLTADEITDQLLYFYLNGHRLDSISFMGMGEALANP-----ELFDALKILTDPNLFGL 179 (347)
T ss_pred ecCCCcCCCCCCCCCCCCCCcccCCHHHHHHHHHHHHhcCCCcceEEEeecCCccCCH-----HHHHHHHHHhcccccCC
Confidence 3478999999999988643233589999999988776665 89999999 7643221 2666666666521 11
Q ss_pred --cEEEeecCCCCCChHHHHHHHHcCcccccc--cccch-HHHHHHhcC--CCCCHHHHHHHHHHHHHhCCCCceEEEeE
Q 017200 209 --MLIEALVPDFRGNNGCVREVAKSGLNVFAH--NIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKTSI 281 (375)
Q Consensus 209 --i~Ie~l~pd~~g~~e~l~~L~~aGldv~~h--nlEtv-~rl~~~mr~--r~~s~~~~l~vl~~ak~~~p~Gl~tkt~i 281 (375)
-+|.+.+-.+. ..++.+.+.... +.. .+.+. ++...++.+ +++..++-++.++........-+.+..-+
T Consensus 180 ~~r~itVsT~G~~---~~i~~l~~~~~~-v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~~V~iry~L 255 (347)
T PRK14453 180 SQRRITISTIGII---PGIQRLTQEFPQ-VNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGRKVYIAYIM 255 (347)
T ss_pred CCCcEEEECCCCc---hhHHHHHhhccC-cCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence 23454443332 224444443222 222 33333 355665553 45666666665555444222226678888
Q ss_pred EEecCCCHHHHHHHHHHHHHcC----CcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 282 MLGCGETPDQVVSTMEKVRAAG----VDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 282 mvGlGET~ee~~etl~~Lrelg----vd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
|=|+-.++||+.+..++++.++ +..|.+-+|. |......-.+....++.+.+.++..+.|+...
T Consensus 256 I~GvNDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn-~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vt 323 (347)
T PRK14453 256 LEGVNDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYN-STDKTPFKFQSSSAGQIKQFCSTLKSAGISVT 323 (347)
T ss_pred ECCCCCCHHHHHHHHHHHhhccccCCcceEEEecCC-CCCCCCccCCCCCHHHHHHHHHHHHHCCCcEE
Confidence 8899999999999999999884 4567776664 32211111233456778888888888887543
|
|
| >TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.7e-07 Score=91.37 Aligned_cols=181 Identities=19% Similarity=0.237 Sum_probs=120.6
Q ss_pred hhhhhhhcCCCCcccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCCC--CCCCCcchHHHHHHHHHh-cCCcEEEEE
Q 017200 104 LHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRA--PPPPDPDEPTNVAEAIAS-WGLDYVVIT 180 (375)
Q Consensus 104 L~tvceeA~cpn~~ec~~~~~~~~~tatfm~i~d~C~~~C~FC~v~~~r~--~~~ld~eEi~~~a~al~~-~G~~eIvLT 180 (375)
..-++|+...|--+- -|-+.....+.+++.|+..|+||..+...+ ...++.+++.+.++.+++ .++++|.||
T Consensus 88 ~Dpl~E~~~spvpGl-----~HrYp~rvLl~vT~~C~~~CryC~R~~~~g~~~~~ls~eei~~~i~yI~~~p~I~~VlLS 162 (417)
T TIGR03820 88 EDPLAEDEDSPVPGI-----THRYPDRVLFLVSNTCAMYCRHCTRKRKVGDRDSIPSKEQILEGIEYIRNTPQIRDVLLS 162 (417)
T ss_pred cCcccccccCCCCCc-----eeccCCEEEEEEcCCcCCCCcCCCCcccCCcccccCCHHHHHHHHHHHHhcCCCCEEEEe
Confidence 345666655553321 111234555667999999999998765211 224788999998888887 499999999
Q ss_pred eeeCCCCCcccHHHHHHHHHHHHHhCCCc---EEEeecCCCC---CChHHHHHHHHcCcccccccccchHHHHHHhcCCC
Q 017200 181 SVDRDDLADQGSGHFAQTVRKLKELKPNM---LIEALVPDFR---GNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHR 254 (375)
Q Consensus 181 sgdr~dl~d~G~~~~~~lir~Ik~~~p~i---~Ie~l~pd~~---g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~ 254 (375)
|||---++| ..+..+++.|++ .|++ +|..-+|.+. -+.+.++.|++.+...+...+...+++
T Consensus 163 GGDPLll~d---~~L~~iL~~L~~-IphV~~IRI~TR~pvv~P~RIT~ell~~Lk~~~~~~v~~h~nhp~Ei-------- 230 (417)
T TIGR03820 163 GGDPLLLSD---DYLDWILTELRA-IPHVEVIRIGTRVPVVLPQRITDELVAILKKHHPVWLNTHFNHPREI-------- 230 (417)
T ss_pred CCccccCCh---HHHHHHHHHHhh-cCCCceEEEeeccccccccccCHHHHHHHHhcCCeEEEEeCCChHhC--------
Confidence 998655554 334445666665 3554 3443333322 168899999999865554333333343
Q ss_pred CCHHHHHHHHHHHHHhCCCCceE--EEeEEEecCCCHHHHHHHHHHHHHcCCcE
Q 017200 255 ANFKQSLDVLMMAKDYVPAGTLT--KTSIMLGCGETPDQVVSTMEKVRAAGVDV 306 (375)
Q Consensus 255 ~s~~~~l~vl~~ak~~~p~Gl~t--kt~imvGlGET~ee~~etl~~Lrelgvd~ 306 (375)
.++..+.++.+++ .|+.+ -|-++=|...+.+-+.++++.|-+++|.-
T Consensus 231 --t~~a~~Al~~L~~---aGI~l~nQsVLLkGVND~~~~l~~L~~~L~~~gV~P 279 (417)
T TIGR03820 231 --TASSKKALAKLAD---AGIPLGNQSVLLAGVNDCPRIMKKLVHKLVANRVRP 279 (417)
T ss_pred --hHHHHHHHHHHHH---cCCEEEeeceEECCcCCCHHHHHHHHHHHHHCCCee
Confidence 4666788888888 57654 56777788888888999999999999753
|
This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region. |
| >COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.2e-06 Score=89.38 Aligned_cols=197 Identities=16% Similarity=0.290 Sum_probs=139.8
Q ss_pred HHHHHHHHhccChhhhhhhcCCCCcccccCCCCCCccEEEEeeeCCccCC-CCcCCCCC------CCC---CCCC-----
Q 017200 92 YVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTR-GCRFCNVK------TSR---APPP----- 156 (375)
Q Consensus 92 ~~~~~~~l~~~~L~tvceeA~cpn~~ec~~~~~~~~~tatfm~i~d~C~~-~C~FC~v~------~~r---~~~~----- 156 (375)
..+++.+|+..-..|. +| -+.++.|.--.+|+. .|-||... ++. .|..
T Consensus 47 ~~~l~~~lr~KPvRt~-------------sg----vaVVaVmt~p~~CPHg~CvfCpgg~~~~spQSytg~ep~~~R~~~ 109 (515)
T COG1243 47 EERLREILRRKPVRTI-------------SG----VAVVAVMTSPHGCPHGRCVFCPGGPDKDSPQSYTGEEPAALRAIK 109 (515)
T ss_pred HHHHHHHHhhcCcccc-------------cc----ceEEEEecCCCCCCCCeEEeCCCCCCCCCCcccCCCCchhhhHhh
Confidence 3447777776544433 11 345555655679997 99999877 221 1211
Q ss_pred --CC-cchHHHHHHHHHhcCC---c-EEEEEeeeCCCCCcccHHHHHHHH-HHHH----------HhC--CCcE---EEe
Q 017200 157 --PD-PDEPTNVAEAIASWGL---D-YVVITSVDRDDLADQGSGHFAQTV-RKLK----------ELK--PNML---IEA 213 (375)
Q Consensus 157 --ld-~eEi~~~a~al~~~G~---~-eIvLTsgdr~dl~d~G~~~~~~li-r~Ik----------~~~--p~i~---Ie~ 213 (375)
.| ..+....++++...|- + ++.|-||+=..++-.--++|...+ +++- ..+ ...+ |.+
T Consensus 110 ~~ydpY~q~~~Rl~qL~~igh~~~KvEliimGGTFta~~~~yqe~Fi~~~~~amn~f~~~le~a~~~ne~~~~r~vgiti 189 (515)
T COG1243 110 NRYDPYEQVRARLKQLETIGHTSDKVELIIMGGTFTALSLEYQEWFLKVALKAMNDFGYDLEEAQRKNETAELRCVGITI 189 (515)
T ss_pred ccCCcHHHHHHHHHHHHHcCCCcceEEEEEecccccCCCHHHHHHHHHHHHHhhhccchhHHHHHHhhcccccceeEEEE
Confidence 22 3566677888888885 3 888999976555432233444333 2222 111 1122 222
Q ss_pred -ecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHH
Q 017200 214 -LVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPD 290 (375)
Q Consensus 214 -l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~e 290 (375)
--||+. +++.+..|+..|++.+..++++. +++++++. |+|+.++..+.-+.+|+ .|+.+..+||.|| |-+.|
T Consensus 190 ETRPD~~-~ee~ld~mlkyG~TrVELGVQSiyd~Vl~~~~-RGHtvedv~~a~rLlKd---~GfKv~~HiMpGLPgs~~e 264 (515)
T COG1243 190 ETRPDYI-DEEHLDQMLKYGVTRVELGVQSIYDDVLERTK-RGHTVEDVVEATRLLKD---AGFKVGYHIMPGLPGSDFE 264 (515)
T ss_pred ecCcccc-CHHHHHHHHhcCCcEEEEeeeeHHHHHHHHhc-CCccHHHHHHHHHHHHh---cCcEEEEEecCCCCCCChH
Confidence 237876 78999999999999999999987 59999999 99999999999999999 6899999999999 98888
Q ss_pred HHHHHHHHHHHcC---CcEEeee
Q 017200 291 QVVSTMEKVRAAG---VDVMTFG 310 (375)
Q Consensus 291 e~~etl~~Lrelg---vd~v~i~ 310 (375)
-=+++.+.+-+.+ +|++.|-
T Consensus 265 rDl~~f~~~f~~p~f~PDmlKIY 287 (515)
T COG1243 265 RDLESFREIFEDPRFRPDMLKIY 287 (515)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEe
Confidence 8888888888888 8999885
|
|
| >COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.3e-07 Score=88.82 Aligned_cols=170 Identities=16% Similarity=0.316 Sum_probs=113.6
Q ss_pred eeCCccCCCCcCCCCCCCCC-CC-CCCcchHHHHHHHHHhcC-CcEEEEEeee--CCCCCcccHHHHHHHHHHHHHhC--
Q 017200 134 ILGDTCTRGCRFCNVKTSRA-PP-PPDPDEPTNVAEAIASWG-LDYVVITSVD--RDDLADQGSGHFAQTVRKLKELK-- 206 (375)
Q Consensus 134 ~i~d~C~~~C~FC~v~~~r~-~~-~ld~eEi~~~a~al~~~G-~~eIvLTsgd--r~dl~d~G~~~~~~lir~Ik~~~-- 206 (375)
+++|.|..+|+||.-..+.. |. .++++|+++..-...+.. +.-..|.||. .+|+. .+.+.++.+.++-..
T Consensus 59 LlTN~CiyDC~YCINr~s~~~pra~ftp~Eiv~ltlnfYrRnYIeGLFLSSGvi~~~DyT---mE~mi~var~LRle~~f 135 (404)
T COG4277 59 LLTNFCIYDCAYCINRSSNDTPRARFTPEEIVDLTLNFYRRNYIEGLFLSSGVIKNPDYT---MEEMIEVARILRLEHKF 135 (404)
T ss_pred HHhhhHHHhhHHHhccccCCCcccccCHHHHHHHHHHHHHHhhhhhheeccccccCcchH---HHHHHHHHHHHhhcccc
Confidence 47999999999998866543 42 489999999876665554 4677788874 34443 566677777765322
Q ss_pred -CCcEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHH---------------
Q 017200 207 -PNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKD--------------- 269 (375)
Q Consensus 207 -p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~--------------- 269 (375)
.-|++. ++|.- +++.+++.-.. +|.+..|||+. ++-++.+.| ..++.+.+.-+..++.
T Consensus 136 ~GYIHlK-~IPga--s~~li~eagly-adRvSiNIElp~~~~lk~lap-~K~p~dI~r~Mg~ir~~i~e~~e~~~r~r~t 210 (404)
T COG4277 136 RGYIHLK-IIPGA--SPDLIKEAGLY-ADRVSINIELPTDDGLKLLAP-EKDPTDILRSMGWIRLKILENAEDKRRKRHT 210 (404)
T ss_pred CcEEEEE-ecCCC--CHHHHHHHhhh-hheeEEeEecCCcchhhhhCC-CCChHHHHHHHHHHHHHHhhcccchhhhccC
Confidence 225555 44543 66666665443 58899999975 355666663 4445544444444333
Q ss_pred --hCCCCceEEEeEEEec-CCCHHHHHHHHHHHHH-cCCcEEeeecCC
Q 017200 270 --YVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRA-AGVDVMTFGQYM 313 (375)
Q Consensus 270 --~~p~Gl~tkt~imvGl-GET~ee~~etl~~Lre-lgvd~v~i~qYl 313 (375)
..|.| -.|.||||- ||||++++..-..|.. .+...|-+..|+
T Consensus 211 p~fapaG--QSTQmivGA~~~tD~~Ilsrs~~ly~~y~lkRVyySaf~ 256 (404)
T COG4277 211 PEFAPAG--QSTQMIVGADGETDEDILSRSENLYGRYSLKRVYYSAFS 256 (404)
T ss_pred ccccCCC--CceEEEEecCCCchHHHHHHHHHHhhccceeEEEeeccc
Confidence 23445 478999999 9999999998888775 466677776564
|
|
| >COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.9e-06 Score=79.73 Aligned_cols=206 Identities=16% Similarity=0.198 Sum_probs=135.8
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCC---CCC---CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHH
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRA---PPP---PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKL 202 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~---~~~---ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~I 202 (375)
...+.+..-||+.+|.||.=+.... +.. ++++++.+.+ ....+++-|++|||+-- +- .+.+.++++..
T Consensus 35 ~~~~~vf~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~--~~~~~~~gvt~SGGEP~-~q---~e~~~~~~~~a 108 (260)
T COG1180 35 SIRLSVFLQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKA--FYSESGGGVTFSGGEPT-LQ---AEFALDLLRAA 108 (260)
T ss_pred cEEEEEEeCCCCCCCCCCCChhHhcccccCchhhcCHHHHHHHh--hhcCCCCEEEEECCcch-hh---HHHHHHHHHHH
Confidence 3445556679999999998765321 111 3333333322 23347899999999742 21 56778888888
Q ss_pred HHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE
Q 017200 203 KELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI 281 (375)
Q Consensus 203 k~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~i 281 (375)
|+. ++.+.+-+-.|. ..+.++.|.+. +|.+..-+=. .+++|+.+. +++-+..++.++.+++.... +.+++-+
T Consensus 109 ke~--Gl~~~l~TnG~~-~~~~~~~l~~~-~D~v~~DlK~~~~~~y~~~t--g~~~~~vl~~~~~l~~~g~~-ve~r~lv 181 (260)
T COG1180 109 KER--GLHVALDTNGFL-PPEALEELLPL-LDAVLLDLKAFDDELYRKLT--GADNEPVLENLELLADLGVH-VEIRTLV 181 (260)
T ss_pred HHC--CCcEEEEcCCCC-CHHHHHHHHhh-cCeEEEeeccCChHHHHHHh--CCCcHHHHHHHHHHHcCCCe-EEEEEEE
Confidence 876 677766555443 56667778776 6766554433 357788888 45558899999999884222 3456666
Q ss_pred EEecCCCHHHHHHHHHHHHHcCC-cEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccc
Q 017200 282 MLGCGETPDQVVSTMEKVRAAGV-DVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASG 349 (375)
Q Consensus 282 mvGlGET~ee~~etl~~Lrelgv-d~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sg 349 (375)
+=|+...++|+.+..+++.+++. .-+.+.+|.++.. +.....-..+..+...+++.+.|..++..|
T Consensus 182 iPg~~d~~e~i~~i~~~i~~~~~~~p~~~l~fhp~~~--~~~~p~~~~~~le~~~~~a~~~~~~~v~~~ 248 (260)
T COG1180 182 IPGYNDDEEEIRELAEFIADLGPEIPIHLLRFHPDYK--LKDLPPTPVETLEEAKKLAKEEGLKFVYIG 248 (260)
T ss_pred ECCCCCCHHHHHHHHHHHHhcCCcccEEEeccccCcc--ccccCCCcHHHHHHhHhhhHHHHHHhHhhh
Confidence 66778899999999999998653 3466656643322 222122235678888899999888887654
|
|
| >PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=8.8e-06 Score=81.67 Aligned_cols=202 Identities=11% Similarity=0.170 Sum_probs=125.7
Q ss_pred EeeeCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHh----cCCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHHhC
Q 017200 132 IMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIAS----WGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELK 206 (375)
Q Consensus 132 fm~i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~----~G~~eIvLTs-gdr~dl~d~G~~~~~~lir~Ik~~~ 206 (375)
.+.-+.||+.+|.||+-+...-...++.+|+++.+..+.. .++..||+.| |+.-. ..+.+.+.++.++...
T Consensus 102 cvSsq~GC~l~C~FC~t~~~G~~rnlt~~EIv~Qv~~~~~~~~~~~v~~VvfmGmGEPL~----N~d~v~~~l~~l~~~~ 177 (348)
T PRK14467 102 CVSSQVGCAVGCKFCATAKDGLIRNLRTAEIIDQYIQVQKFLGENRIRNVVFMGMGEPLA----NYENVRKAVQIMTSPW 177 (348)
T ss_pred EEEcCCCCCCcCcCCCCCCCCCcCCCCHHHHHHHHHHHHHHhccCCCCeEEEEccChhhc----CHHHHHHHHHHHcChh
Confidence 3446899999999998765321235899999988876654 3589999999 65321 1456677777776422
Q ss_pred CCc-----EEEeecCCCCCChHHHHHHHHcC----cccccccccch-HHHHHHhcCC--CCCHHHHHHHHHHHHHhCCCC
Q 017200 207 PNM-----LIEALVPDFRGNNGCVREVAKSG----LNVFAHNIETV-EELQSAVRDH--RANFKQSLDVLMMAKDYVPAG 274 (375)
Q Consensus 207 p~i-----~Ie~l~pd~~g~~e~l~~L~~aG----ldv~~hnlEtv-~rl~~~mr~r--~~s~~~~l~vl~~ak~~~p~G 274 (375)
++ ++.+.+-.+ ...+..+.... ++ +...+... ++.++++.|. ++.++.-++.++...+....-
T Consensus 178 -gl~~~~r~itvsT~G~---~~~i~~l~~~~~l~~v~-LalSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~~~~~g~~ 252 (348)
T PRK14467 178 -GLDLSKRRITISTSGI---IHQIKRMAEDPVMPEVN-LAVSLNASSQKLRERIMPISKTNTLEELMEVLKQYPLPPGRR 252 (348)
T ss_pred -ccCcCCCcEEEECCCC---hhHHHHHHhhccccCee-EEEECCCCCHHHHHHhcCCccccCHHHHHHHHHHHHHhcCCe
Confidence 23 555555433 23345554432 23 22445544 5888888852 356666666665443222111
Q ss_pred ceEEEeEEEecCCCHHHHHHHHHHHHHcC-CcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhh
Q 017200 275 TLTKTSIMLGCGETPDQVVSTMEKVRAAG-VDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (375)
Q Consensus 275 l~tkt~imvGlGET~ee~~etl~~Lrelg-vd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (375)
+.+.--+|=|+-.++|++.+..++++.++ +..|.+-+| .|.. ..+. +...+++.+.+.++..+.|+..
T Consensus 253 V~ieyvLIpGvNDs~e~a~~La~~l~~l~~~~~VnLIPy-np~~-~~~~-~~ps~e~i~~f~~~L~~~gi~v 321 (348)
T PRK14467 253 IMLEYVLIKGVNDSPEDALRLAQLIGKNKKKFKVNLIPF-NPDP-ELPY-ERPELERVYKFQKILWDNGIST 321 (348)
T ss_pred EEEEEEEECCccCCHHHHHHHHHHHhcCCCceEEEEecC-CCCC-CCCC-CCCCHHHHHHHHHHHHHCCCcE
Confidence 45566666688899999999999999985 455666555 2311 1222 2234667777888777777754
|
|
| >COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.4e-07 Score=87.29 Aligned_cols=163 Identities=16% Similarity=0.274 Sum_probs=113.9
Q ss_pred EeeeCCccCCCCcCCCCCCCCC-CC-----CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHh
Q 017200 132 IMILGDTCTRGCRFCNVKTSRA-PP-----PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205 (375)
Q Consensus 132 fm~i~d~C~~~C~FC~v~~~r~-~~-----~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~ 205 (375)
.+-+++.|+++|-||-++..|. .. ..+.....+..+.+.-++..-+-||||+.- +. .+...++++.+|..
T Consensus 31 VlFvTG~C~~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~~a~GasiTGGdPl-~~---ieR~~~~ir~LK~e 106 (353)
T COG2108 31 VLFVTGLCNRSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLMDALGASITGGDPL-LE---IERTVEYIRLLKDE 106 (353)
T ss_pred EEEEecccCCCcccCcCCHHhcCCcceeecccccCcHHHHHHHHHHhccccccccCCChH-HH---HHHHHHHHHHHHHh
Confidence 3445899999999999986432 11 134444455555555666677788998731 11 56788999999988
Q ss_pred C-CCcEEEeecCCCCCChHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEE-
Q 017200 206 K-PNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIML- 283 (375)
Q Consensus 206 ~-p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imv- 283 (375)
+ .+.+|++.+.....+.+.++.|.+||+|-+-.+.. ++.....+.+++.|..|++. |+.+ ++=+
T Consensus 107 fG~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~---------~~~~~~~e~~i~~l~~A~~~---g~dv--G~EiP 172 (353)
T COG2108 107 FGEDFHIHLYTTGILATEEALKALAEAGLDEIRFHPP---------RPGSKSSEKYIENLKIAKKY---GMDV--GVEIP 172 (353)
T ss_pred hccceeEEEeeccccCCHHHHHHHHhCCCCeEEecCC---------CccccccHHHHHHHHHHHHh---Cccc--eeecC
Confidence 7 56899998876666899999999999997765422 11123457889999999884 4322 2211
Q ss_pred ecCCCHHHHHHHHHHHHHcCCcEEeeecC
Q 017200 284 GCGETPDQVVSTMEKVRAAGVDVMTFGQY 312 (375)
Q Consensus 284 GlGET~ee~~etl~~Lrelgvd~v~i~qY 312 (375)
.+=.-++.+++..+.+.+.+.+++++.+.
T Consensus 173 aipg~e~~i~e~~~~~~~~~~~FlNiNEL 201 (353)
T COG2108 173 AIPGEEEAILEFAKALDENGLDFLNINEL 201 (353)
T ss_pred CCcchHHHHHHHHHHHHhcccceeeeeee
Confidence 22234677889999999999999998544
|
|
| >COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.3e-06 Score=87.16 Aligned_cols=183 Identities=18% Similarity=0.294 Sum_probs=127.2
Q ss_pred EEEeeeCCccCCC----CcCCCCCCCCCCCCCCcchHHHHHHHHHhcCCcEEEEEeee------CCC----CCcccHHHH
Q 017200 130 ATIMILGDTCTRG----CRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVD------RDD----LADQGSGHF 195 (375)
Q Consensus 130 atfm~i~d~C~~~----C~FC~v~~~r~~~~ld~eEi~~~a~al~~~G~~eIvLTsgd------r~d----l~d~G~~~~ 195 (375)
..=|-...+|.+. |+||.=+....+...++|.++++++++.+.|+++..|-=+. .++ .|.-..+-+
T Consensus 184 i~EiETyRGC~r~~~ggCSFCtEp~~g~~~~R~~e~Vv~EVkaLY~~GvrhFRlGRQ~difsy~~~~~g~e~P~PnPeal 263 (560)
T COG1031 184 ICEIETYRGCPRRVSGGCSFCTEPVRGRPEFRPPEDVVEEVKALYRAGVRHFRLGRQADIFSYGADDNGGEVPRPNPEAL 263 (560)
T ss_pred EEEEeeccCCcccccCCCccccCcCcCCcccCCHHHHHHHHHHHHHhccceeeeccccceeeecccccCCCCCCCCHHHH
Confidence 3334567899987 99998776433445899999999999999999999875441 111 221125678
Q ss_pred HHHHHHHHHhCCCcEE---EeecCCCCC-----ChHHHHHHHHcC--cccccccccchH-HHHHHhcCCCCCHHHHHHHH
Q 017200 196 AQTVRKLKELKPNMLI---EALVPDFRG-----NNGCVREVAKSG--LNVFAHNIETVE-ELQSAVRDHRANFKQSLDVL 264 (375)
Q Consensus 196 ~~lir~Ik~~~p~i~I---e~l~pd~~g-----~~e~l~~L~~aG--ldv~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl 264 (375)
.++.+.|+...|++.+ .-.-|.... +.+.++.+...| =|+.+.++||.| ++.+.=+ -..+.++.++.+
T Consensus 264 ekL~~Gir~~AP~l~tLHiDNaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfGlEsaDp~V~r~Nn-L~~spEEvl~AV 342 (560)
T COG1031 264 EKLFRGIRNVAPNLKTLHIDNANPATIARYPEESREIAKVIVKYGTPGNVAAFGLESADPRVARKNN-LNASPEEVLEAV 342 (560)
T ss_pred HHHHHHHHhhCCCCeeeeecCCCchhhhcChHHHHHHHHHHHhhCCCCceeeeeccccCHHHHhhcc-ccCCHHHHHHHH
Confidence 8889999998887643 112222111 244455554432 278888999987 6665544 689999999999
Q ss_pred HHHHHhCC----CCc---eEEEeEEEec-CCCHHHHHHHHHHHHHc---C--CcEEeeecCC
Q 017200 265 MMAKDYVP----AGT---LTKTSIMLGC-GETPDQVVSTMEKVRAA---G--VDVMTFGQYM 313 (375)
Q Consensus 265 ~~ak~~~p----~Gl---~tkt~imvGl-GET~ee~~etl~~Lrel---g--vd~v~i~qYl 313 (375)
+-+-++.. .|| .-..++++|| |||.|-+.-..++|+++ | +..|+|-|-+
T Consensus 343 ~ivn~vG~~rg~nGlP~lLPGINfv~GL~GEtkeT~~ln~efL~~ild~gllvRRINIRqV~ 404 (560)
T COG1031 343 EIVNEVGGGRGYNGLPYLLPGINFVFGLPGETKETYELNYEFLKEILDEGLLVRRINIRQVV 404 (560)
T ss_pred HHHHHhcCccCcCCCccccccceeEecCCCccHHHHHhhHHHHHHHHhcCceEEEeeeeeEe
Confidence 99988743 133 3478999999 99999999888888876 2 3456665553
|
|
| >PRK13745 anaerobic sulfatase-maturase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.4e-06 Score=84.75 Aligned_cols=170 Identities=9% Similarity=0.128 Sum_probs=115.0
Q ss_pred eCCccCCCCcCCCCCCCC-----CC-CCCCcchHHHHHHHHHh-cCCcEE--EEEeeeCCCCCcccHHHHHHHHHHHHHh
Q 017200 135 LGDTCTRGCRFCNVKTSR-----AP-PPPDPDEPTNVAEAIAS-WGLDYV--VITSVDRDDLADQGSGHFAQTVRKLKEL 205 (375)
Q Consensus 135 i~d~C~~~C~FC~v~~~r-----~~-~~ld~eEi~~~a~al~~-~G~~eI--vLTsgdr~dl~d~G~~~~~~lir~Ik~~ 205 (375)
.++.|+.+|.||-..... .+ ..|+.+++.+.++.+.+ .|...+ .++||+. -+.. ...|.++++.+++.
T Consensus 20 ~~~~CNl~C~yC~~~~~~~~~~~~~~~~ms~e~~~~~i~~~~~~~~~~~v~i~f~GGEP-lL~~--~~~~~~~~~~~~~~ 96 (412)
T PRK13745 20 VGAVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKFIKEYINSQTMPQVLFTWHGGET-LMRP--LSFYKKALELQKKY 96 (412)
T ss_pred cCCCcCCCCcccCCcCCCcccccCccCCCCHHHHHHHHHHHHHcCCCCeEEEEEEcccc-CCCc--HHHHHHHHHHHHHH
Confidence 457999999999985321 12 23899999988888775 466554 4478863 2221 23455555544432
Q ss_pred CC--CcEEEeecCCCCCChHHHHHHHHcCcccccccccchHHHHHHhcC---CCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017200 206 KP--NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRD---HRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (375)
Q Consensus 206 ~p--~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~---r~~s~~~~l~vl~~ak~~~p~Gl~tkt~ 280 (375)
.. ++.+.+.+-...-+++.++.+++.++ .+...+++.+++....|. .+.+|++.++.++.+++ .|+.+.
T Consensus 97 ~~~~~i~~~i~TNG~ll~~e~~~~l~~~~~-~v~ISlDG~~~~hD~~R~~~~g~gsf~~v~~~i~~l~~---~gi~~~-- 170 (412)
T PRK13745 97 ARGRQIDNCIQTNGTLLTDEWCEFFRENNF-LVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLLKK---HGVEWN-- 170 (412)
T ss_pred cCCCceEEEEeecCEeCCHHHHHHHHHcCe-EEEEEecCCHHHhhhhcCCCCCCccHHHHHHHHHHHHH---cCCCEE--
Confidence 22 34444444322226888999999986 788888887777777662 24689999999999998 465443
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 281 imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
++.=+ .++.++..+.+++++++|++.+.|.+++
T Consensus 171 i~~vv~~~n~~~~~e~~~~~~~lg~~~~~~~p~~ 204 (412)
T PRK13745 171 AMAVVNDFNADYPLDFYHFFKELDCHYIQFAPIV 204 (412)
T ss_pred EEEEEcCCccccHHHHHHHHHHcCCCeEEEEecc
Confidence 33333 6777888899999999999988776554
|
|
| >COG0731 Fe-S oxidoreductases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.6e-06 Score=82.32 Aligned_cols=212 Identities=14% Similarity=0.232 Sum_probs=143.8
Q ss_pred CccCCCCcCCCCCCCCC-----CCCCCcchHHHHHHHHHhc------CCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHh
Q 017200 137 DTCTRGCRFCNVKTSRA-----PPPPDPDEPTNVAEAIASW------GLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205 (375)
Q Consensus 137 d~C~~~C~FC~v~~~r~-----~~~ld~eEi~~~a~al~~~------G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~ 205 (375)
..|+.+|-||-...... |...+.++|.+..+.+... ..++|-|++.--|.|. .++-++|+.+|+.
T Consensus 32 ~~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~GEPTLy----~~L~elI~~~k~~ 107 (296)
T COG0731 32 KWCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISLSGEPTLY----PNLGELIEEIKKR 107 (296)
T ss_pred hhhcCCCeEEecccCCCCCCCCCceecHHHHHHHHHHHhcccccccCCCCEEEEeCCCCcccc----cCHHHHHHHHHhc
Confidence 38999999999843221 1226778888888887766 5789999887656552 2467888888876
Q ss_pred CCCcEEEeecCCCCCChHHHHHHHHcCcccccccccchH-HHHHHhcCC--CCCHHHHHHHHHHHHHh-CCCCceEEEeE
Q 017200 206 KPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDH--RANFKQSLDVLMMAKDY-VPAGTLTKTSI 281 (375)
Q Consensus 206 ~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~mr~r--~~s~~~~l~vl~~ak~~-~p~Gl~tkt~i 281 (375)
.- +.+-+++-.- -++.++.|.. +|.+-..+++.+ ..|++|+.+ +..|+..++.|+..++. ... +.+.+.+
T Consensus 108 g~-~~tflvTNgs--lpdv~~~L~~--~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~~~~~~~~~-~vir~tl 181 (296)
T COG0731 108 GK-KTTFLVTNGS--LPDVLEELKL--PDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEIFRSEYKGR-TVIRTTL 181 (296)
T ss_pred CC-ceEEEEeCCC--hHHHHHHhcc--CCEEEEEeccCCHHHHHHhcCCCCcchHHHHHHHHHHhhhcCCCc-EEEEEEE
Confidence 42 3443344221 2567777763 677777788876 899999832 36789999999999985 333 5677777
Q ss_pred EEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCC--CCCccccCC-HHHHHHHHHHHHHhhhhhhccchhhhhhcch
Q 017200 282 MLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKR--HMPVSEYIT-PEAFERYRALGMEMGFRYVASGPMVRSSYKV 358 (375)
Q Consensus 282 mvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~--~~~v~~~v~-pe~~~~l~~~a~~~gf~~~~sgp~vrssy~a 358 (375)
+=|+--++|++.+..++|+.+.+|+|-+-.|++|... .++..+.+. .+..+.-+.++...|+.+..--.-.|-...|
T Consensus 182 vkg~N~~~e~~~~~a~ll~~~~Pd~velk~~~rpgas~~~l~~~~~p~~e~~~~f~~~l~~~~~~~~l~~~~~sr~~ll~ 261 (296)
T COG0731 182 VKGINDDEEELEEYAELLERINPDFVELKTYMRPGASRYRLPRSNMPLHEEVLEFAKELGEELGYEILDESEGSRVVLLA 261 (296)
T ss_pred eccccCChHHHHHHHHHHHhcCCCeEEEecCccCChHhhccCccccchhHHHHHHHHHhhcccCeeeeeccCCceEEEcc
Confidence 7788778888999999999999999999999998432 233333222 2223333445555566666554455555555
|
|
| >PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.8e-06 Score=83.32 Aligned_cols=200 Identities=11% Similarity=0.077 Sum_probs=123.3
Q ss_pred eCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHhc-CCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHHhC--CCcE
Q 017200 135 LGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW-GLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELK--PNML 210 (375)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~~-G~~eIvLTs-gdr~dl~d~G~~~~~~lir~Ik~~~--p~i~ 210 (375)
-+.+|+.+|+||......-...++.+|+++.+..+.+. .+++||++| |+.-+. .+...+.++.|.+.. +.-+
T Consensus 102 sQvGC~~~C~FC~tg~~g~~RnLs~~EI~~Qv~~~~~~~~i~nIVfmGmGEPl~N----~d~vl~ai~~l~~~~~i~~r~ 177 (344)
T PRK14464 102 TQVGCAVGCVFCMTGRSGLLRQLGSAEIVAQVVLARRRRAVKKVVFMGMGEPAHN----LDNVLEAIDLLGTEGGIGHKN 177 (344)
T ss_pred ccCCcCCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeccCcccCC----HHHHHHHHHHhhchhcCCCce
Confidence 47899999999987643222247899999988877664 589999999 664322 334555555554321 2222
Q ss_pred EEeecCCCCCChHHHHHHHHcCcc-cccccccch-HHHHHHhcC--CCCCHHHHHHHHHHHHHhCCCCceEEEeEEE-ec
Q 017200 211 IEALVPDFRGNNGCVREVAKSGLN-VFAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKTSIML-GC 285 (375)
Q Consensus 211 Ie~l~pd~~g~~e~l~~L~~aGld-v~~hnlEtv-~rl~~~mr~--r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imv-Gl 285 (375)
|-+++ .|....+..|.+.++. .++..+.+. ++++.++.| ++++.++-++.++...+.... ..+--.+|+ |+
T Consensus 178 itiST---~G~~~~i~rL~~~~v~~~LaiSLhA~~~e~R~~imP~~~~~~l~el~~a~~~~~~~~gr-ri~~EyvLl~GV 253 (344)
T PRK14464 178 LVFST---VGDPRVFERLPQQRVKPALALSLHTTRAELRARLLPRAPRIAPEELVELGEAYARATGY-PIQYQWTLLEGV 253 (344)
T ss_pred EEEec---ccCchHHHHHHHhcCChHHHHHhcCCChhHhheeCCccCCCCHHHHHHHHHHHHHHHCC-EEEEEEEEeCCC
Confidence 32222 1245567777765443 234445654 488887775 577888888888777664322 233333444 78
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 286 GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 286 GET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
-.++|+..+..+.|+.+.+. |.+-+| .|. .+.... .+.+++.+.+.++-.+.|....
T Consensus 254 NDs~e~a~~L~~~l~~~~~~-vNLIPy-N~v-~g~~~~-rp~~~~i~~f~~~L~~~gi~~t 310 (344)
T PRK14464 254 NDSDEEMDGIVRLLKGKYAV-MNLIPY-NSV-DGDAYR-RPSGERIVAMARYLHRRGVLTK 310 (344)
T ss_pred CCCHHHHHHHHHHHhccccc-cceecC-Ccc-CCCCcc-CCCHHHHHHHHHHHHHCCceEE
Confidence 99999999999999977653 333344 231 122222 2446677777776677776543
|
|
| >PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.9e-05 Score=79.53 Aligned_cols=202 Identities=11% Similarity=0.133 Sum_probs=127.5
Q ss_pred eeeCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHhc------CCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC
Q 017200 133 MILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW------GLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK 206 (375)
Q Consensus 133 m~i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~~------G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~ 206 (375)
+.-+.||..+|.||+-....-...++++||++.+..+... .+..||+.|+--+ +- ..+.+.+.++.+++..
T Consensus 114 vSsQvGC~~~C~FCatg~~g~~RnLt~~EIv~QV~~~~~~~~~~~~~~~~vVfmGmGEP-L~--N~d~v~~~l~~l~~~~ 190 (356)
T PRK14462 114 VSSQVGCKVGCAFCLTAKGGFVRNLSAGEIVGQILWIKKDNNIPYEKRVNIVYMGMGEP-LD--NLDNVSKAIKIFSEND 190 (356)
T ss_pred eeccccCCCCCccCCCCCCCCcccCCHHHHHHHHHHHHHhhhccccccCCeEEeCCccc-cc--CHHHHHHHHHHhcCcc
Confidence 3347899999999976643212358999999998765542 2568888854322 11 1456778888887632
Q ss_pred CCc-----EEEeecCCCCCChHHHHHHHHcCccc-ccccccch-HHHHHHhcC--CCCCHHHHHHHHHHHHHhCCCCceE
Q 017200 207 PNM-----LIEALVPDFRGNNGCVREVAKSGLNV-FAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLT 277 (375)
Q Consensus 207 p~i-----~Ie~l~pd~~g~~e~l~~L~~aGldv-~~hnlEtv-~rl~~~mr~--r~~s~~~~l~vl~~ak~~~p~Gl~t 277 (375)
++ +|.+.+-.+ .+.++.|.+.++.+ +...+... ++.++++-| +++..++.++.++...+....-+.+
T Consensus 191 -Gl~~~~r~itVsTsG~---~~~i~~L~~~dl~v~LaiSLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~i 266 (356)
T PRK14462 191 -GLAISPRRQTISTSGL---ASKIKKLGEMNLGVQLAISLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMF 266 (356)
T ss_pred -CCCcCCCceEEECCCC---hHHHHHHHhcCCCeEEEEECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEE
Confidence 23 444444333 35677777765422 33344443 588888775 3556688888776433222222556
Q ss_pred EEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhh
Q 017200 278 KTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (375)
Q Consensus 278 kt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (375)
.--+|=|+--++||..+..++++.+++ .|.+-+| .|.. ..+. +...+++.+.++++..+.|+..
T Consensus 267 eyvLI~GvNDs~e~a~~La~llk~l~~-~VnLIPy-n~~~-~~~~-~~ps~e~i~~f~~~l~~~gi~v 330 (356)
T PRK14462 267 EYLVIKDVNDDLKSAKKLVKLLNGIKA-KVNLILF-NPHE-GSKF-ERPSLEDMIKFQDYLNSKGLLC 330 (356)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhcCc-EEEEEeC-CCCC-CCCC-CCCCHHHHHHHHHHHHHCCCcE
Confidence 777777999999999999999999875 5666555 2311 1122 2245677888888877777654
|
|
| >TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family | Back alignment and domain information |
|---|
Probab=98.45 E-value=9.3e-06 Score=78.93 Aligned_cols=172 Identities=13% Similarity=0.101 Sum_probs=110.6
Q ss_pred CCcchHHHHHHHHHh---cCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCc
Q 017200 157 PDPDEPTNVAEAIAS---WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGL 233 (375)
Q Consensus 157 ld~eEi~~~a~al~~---~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGl 233 (375)
++.+++.+.++.... .+...|.+|||+---. .+.+.++++.+++. ++.+.+.+-.+. ..+.++.+.+. +
T Consensus 106 ~t~eel~~~i~~~~~~~~~~~~~V~~sGGEPll~----~~~l~~l~~~~k~~--g~~~~i~TnG~~-~~~~~~~ll~~-~ 177 (295)
T TIGR02494 106 MTVEEVMRVVLRDSIFYRNSGGGVTLSGGEPLLQ----PEFALALLQACHER--GIHTAVETSGFT-PWETIEKVLPY-V 177 (295)
T ss_pred CcHHHHHHHHHHHHHhcccCCCcEEeeCcchhch----HHHHHHHHHHHHHc--CCcEeeeCCCCC-CHHHHHHHHhh-C
Confidence 466777776655432 2456899999864321 23346888888875 345554443332 34667777653 6
Q ss_pred ccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcC--CcEEeee
Q 017200 234 NVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAG--VDVMTFG 310 (375)
Q Consensus 234 dv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelg--vd~v~i~ 310 (375)
|.+...+... ++.|.+++ +.+++..++.++.+.+.... +.+.+.+|-|+-.+.+|+.+.++++++++ ++.+.+.
T Consensus 178 d~~~isl~~~~~~~~~~~~--g~~~~~vl~~i~~l~~~~~~-~~i~~~~v~~~n~~~~ei~~l~~~~~~~~~~v~~v~l~ 254 (295)
T TIGR02494 178 DLFLFDIKHLDDERHKEVT--GVDNEPILENLEALAAAGKN-VVIRIPVIPGFNDSEENIEAIAAFLRKLEPGVDEIDLL 254 (295)
T ss_pred CEEEEeeccCChHHHHHHh--CCChHHHHHHHHHHHhCCCc-EEEEeceeCCcCCCHHHHHHHHHHHHHhccCCceEEec
Confidence 7766667765 58888887 35788889999998884222 44555567677788899999999999998 7788886
Q ss_pred cCCCCCC--------CCCCcccc--CCHHHHHHHHHHHHH
Q 017200 311 QYMRPSK--------RHMPVSEY--ITPEAFERYRALGME 340 (375)
Q Consensus 311 qYl~P~~--------~~~~v~~~--v~pe~~~~l~~~a~~ 340 (375)
+|. |.. ...++.++ ++.++.+.+.++..+
T Consensus 255 ~~~-~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 293 (295)
T TIGR02494 255 PYH-RLGENKYRQLGREYPDSEIPDPAEEQLLELKEIFES 293 (295)
T ss_pred CCC-chhHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHh
Confidence 664 311 11222222 445666666665544
|
This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0 |
| >PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.5e-05 Score=77.26 Aligned_cols=201 Identities=11% Similarity=0.139 Sum_probs=124.7
Q ss_pred eCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHhc----------CCcEEEEEeeeCCCCCcccHHHHHHHHHHHHH
Q 017200 135 LGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW----------GLDYVVITSVDRDDLADQGSGHFAQTVRKLKE 204 (375)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~~----------G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~ 204 (375)
-+-||+.+|.||+-+...-...++.+||++.+..+... +++.||+.|+--|-+ ..+.+.+.++.+++
T Consensus 109 sQvGC~~~C~FC~t~~~g~~rnLt~~EIv~Qv~~~~~~~~~~~~~gg~~~~nvV~mGmGEPL~---N~d~v~~al~~l~~ 185 (372)
T PRK11194 109 SQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGEPLL---NLNNVVPAMEIMLD 185 (372)
T ss_pred cCCCCCCcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHhhhccccCCcccceEEEecCCcccc---CHHHHHHHHHHHhh
Confidence 46899999999987643212348999999987665431 278999998533322 14455666777764
Q ss_pred hCC-Cc---EEEeecCCCCCChHHHHHHHHcCcc-cccccccc-hHHHHHHhcCC--CCCHHHHHHHHHHHHHhCC---C
Q 017200 205 LKP-NM---LIEALVPDFRGNNGCVREVAKSGLN-VFAHNIET-VEELQSAVRDH--RANFKQSLDVLMMAKDYVP---A 273 (375)
Q Consensus 205 ~~p-~i---~Ie~l~pd~~g~~e~l~~L~~aGld-v~~hnlEt-v~rl~~~mr~r--~~s~~~~l~vl~~ak~~~p---~ 273 (375)
... ++ +|.+.+-. ....++.+.+.. | .+...+.. .++.++++.|. ++..++.++.++..-+..+ .
T Consensus 186 ~~g~~i~~r~itVsTsG---~~~~i~~l~~~~-d~~LaiSLha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~~~~~~r 261 (372)
T PRK11194 186 DFGFGLSKRRVTLSTSG---VVPALDKLGDMI-DVALAISLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSNANQG 261 (372)
T ss_pred hhccCcCCCeEEEECCC---CchHHHHHHhcc-CeEEEeeccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHhcccCCC
Confidence 321 12 55554432 234566666543 4 23333443 45888888753 4555666655544433221 1
Q ss_pred CceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 274 GTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 274 Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
-+.+..-+|=|+-.++|++.+..++++.+++ .|.+-+| .|.. ..+. +...++..+.+.++..+.|+...
T Consensus 262 rI~irypLIpGvNDs~e~a~~La~ll~~l~~-~VnLIPY-N~~~-~~~~-~~ps~e~v~~f~~~L~~~Gi~vt 330 (372)
T PRK11194 262 RVTVEYVMLDHVNDGTEHAHQLAELLKDTPC-KINLIPW-NPFP-GAPY-GRSSNSRIDRFSKVLMEYGFTVI 330 (372)
T ss_pred eEEEEEEeECCCCCCHHHHHHHHHHHhcCCc-eEEEecC-CCCC-CCCC-CCCCHHHHHHHHHHHHHCCCeEE
Confidence 2677888889999999999999999999864 5666555 3321 1222 22456677888888777787543
|
|
| >PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=7.8e-05 Score=74.74 Aligned_cols=203 Identities=10% Similarity=0.122 Sum_probs=123.5
Q ss_pred EEeeeCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHhc---CCcEEEE-EeeeCCCCCcccHHHHHHHHHHHHHhC
Q 017200 131 TIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW---GLDYVVI-TSVDRDDLADQGSGHFAQTVRKLKELK 206 (375)
Q Consensus 131 tfm~i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~~---G~~eIvL-Tsgdr~dl~d~G~~~~~~lir~Ik~~~ 206 (375)
..+..+.||+.+|.||+-....-...++++||++.+...... .++.||+ .||+.- + ..+.+.++++.+++..
T Consensus 103 ~cvSsqvGC~~~C~FC~tg~~G~~rnlt~~EI~~qv~~~~~~~~~~~~gvV~mggGEPL-l---n~d~v~~~l~~l~~~~ 178 (342)
T PRK14454 103 ICVSTQVGCRMGCKFCASTIGGMVRNLTAGEMLDQILAAQNDIGERISNIVLMGSGEPL-D---NYENVMKFLKIVNSPY 178 (342)
T ss_pred EEEEcCCCCCCcCCcCCCCCCCCcccCCHHHHHHHHHHHHHHhcCCCCCEEEECCchhh-c---CHHHHHHHHHHHhccc
Confidence 345568899999999976543212248999999998876542 3566664 444422 1 1455677787777532
Q ss_pred CCc-----EEEeecCCCCCChHHHHHHHHcCccc-ccccccch-HHHHHHhcC--CCCCHHHHHHHHHH-HHHhCCCCce
Q 017200 207 PNM-----LIEALVPDFRGNNGCVREVAKSGLNV-FAHNIETV-EELQSAVRD--HRANFKQSLDVLMM-AKDYVPAGTL 276 (375)
Q Consensus 207 p~i-----~Ie~l~pd~~g~~e~l~~L~~aGldv-~~hnlEtv-~rl~~~mr~--r~~s~~~~l~vl~~-ak~~~p~Gl~ 276 (375)
++ ++.+.+-.+ ...+..+.+.++.+ +...+-.. ++.++++.| .++..++.++.++. ..+. ..-+.
T Consensus 179 -gi~~~~r~itvsTsG~---~p~i~~l~~~~~~~~laisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~~~-~~rv~ 253 (342)
T PRK14454 179 -GLNIGQRHITLSTCGI---VPKIYELADENLQITLAISLHAPNDELRKKMMPIANKYSIEELIEACKYYINKT-NRRIT 253 (342)
T ss_pred -ccCcCCCceEEECcCC---hhHHHHHHhhcccceEEEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHh-CCEEE
Confidence 23 455544333 22367777664321 33334443 477777775 34556666655544 2332 11144
Q ss_pred EEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 277 TKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 277 tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
+.--+|=|+..++|++.+..++++.+.+ .|.+-+| .|.. ..+. +...+++.+.+.++..+.|+...
T Consensus 254 iey~LI~gvNDs~eda~~La~llk~l~~-~VnLiPy-n~~~-~~~~-~~ps~e~l~~f~~~l~~~gi~v~ 319 (342)
T PRK14454 254 FEYALVKGVNDSKEDAKELGKLLKGMLC-HVNLIPV-NEVK-ENGF-KKSSKEKIKKFKNILKKNGIETT 319 (342)
T ss_pred EEEEeECCCCCCHHHHHHHHHHHhcCCc-eEEEEec-CCCC-CCCC-CCCCHHHHHHHHHHHHHCCCcEE
Confidence 5666777889999999999999998753 5565555 3321 1122 22456788888888888887654
|
|
| >PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0001 Score=73.87 Aligned_cols=199 Identities=10% Similarity=0.045 Sum_probs=124.0
Q ss_pred eCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHh---cCCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHHhC----
Q 017200 135 LGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIAS---WGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELK---- 206 (375)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~---~G~~eIvLTs-gdr~dl~d~G~~~~~~lir~Ik~~~---- 206 (375)
-+-||+.+|+||+-....-...++.+||+..+-.+.+ ..+..||+-| |+.- + ..+.+.+.++.|+...
T Consensus 111 sQvGC~m~C~FC~tg~~g~~rnlta~EI~~qv~~~~~~~~~~~~niVFmGmGEPL-~---N~d~V~~~~~~l~~~~~~~~ 186 (342)
T PRK14465 111 SQIGCTLNCKFCATAKLEFQGNLKAHEIVDQVLQVEKIVGDRATNVVFMGMGEPM-H---NYFNVIRAASILHDPDAFNL 186 (342)
T ss_pred ecCCCCCCCCCCcCCCCCccCCCCHHHHHHHHHHHHHhcCCCceEEEEEcCCcch-h---hHHHHHHHHHHHhChhhhcC
Confidence 4779999999998866432234889999988876654 3589999999 6531 1 1344556666565431
Q ss_pred CCcEEEeecCCCCCChHHHHHHHHcCc-ccccccccch-HHHHHHhcC--CCCCHHHHHHHHHHHHHhCCCCceEEEeEE
Q 017200 207 PNMLIEALVPDFRGNNGCVREVAKSGL-NVFAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKTSIM 282 (375)
Q Consensus 207 p~i~Ie~l~pd~~g~~e~l~~L~~aGl-dv~~hnlEtv-~rl~~~mr~--r~~s~~~~l~vl~~ak~~~p~Gl~tkt~im 282 (375)
..-+|.+.+-. ....+..+.+... -.++..+... ++++.++-| +++..++.++.++...+....-+.+.--+|
T Consensus 187 ~~r~itvST~G---~~~~i~~l~~~~~~~~LaiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI 263 (342)
T PRK14465 187 GAKRITISTSG---VVNGIRRFIENKEPYNFAISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMI 263 (342)
T ss_pred CCCeEEEeCCC---chHHHHHHHhhccCceEEEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEE
Confidence 11255555432 2344566654322 2355556655 488888754 578889999999866543222133334445
Q ss_pred EecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhh
Q 017200 283 LGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (375)
Q Consensus 283 vGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (375)
=|+-.++||+.+..+.++.+++. |.+-+|= |. ..... ..++++.+.+.++-.+.|+..
T Consensus 264 ~GvNDs~eda~~L~~ll~~l~~k-VnLIPyN-~~--~~~~~-~ps~e~i~~F~~~L~~~Gi~v 321 (342)
T PRK14465 264 PGVNMGRENANKLVKIARSLDCK-INVIPLN-TE--FFGWR-RPTDDEVAEFIMLLEPAGVPI 321 (342)
T ss_pred CCccCCHHHHHHHHHHHhhCCCc-EEEEccC-CC--CCCCC-CCCHHHHHHHHHHHHHCCCeE
Confidence 57788999999999999998743 4444552 31 22222 245667777777777766654
|
|
| >KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.30 E-value=7.8e-07 Score=85.00 Aligned_cols=171 Identities=19% Similarity=0.262 Sum_probs=114.5
Q ss_pred EEEe--eeCCccCCCCcCCCCCCCCC--CCC--CCcchHHHHHHHHHhcCCcEEEEEeee---CCCCCcccHHHHHHHHH
Q 017200 130 ATIM--ILGDTCTRGCRFCNVKTSRA--PPP--PDPDEPTNVAEAIASWGLDYVVITSVD---RDDLADQGSGHFAQTVR 200 (375)
Q Consensus 130 atfm--~i~d~C~~~C~FC~v~~~r~--~~~--ld~eEi~~~a~al~~~G~~eIvLTsgd---r~dl~d~G~~~~~~lir 200 (375)
-||+ .+++.|+.+|.||++..++. |.. +...||++.+...+..|++.+.||||+ +.|..+ .+.
T Consensus 10 htyLrislte~cnlrc~ycMpsegv~l~pk~~~lav~eilrl~~~F~~qgv~knrLtggeptIr~di~~--------i~~ 81 (323)
T KOG2876|consen 10 HTYLRISLTEKCNLRCQYCMPSEGVPLKPKRKLLAVSEILRLAGLFAPQGVDKNRLTGGEPLIRQDIVP--------IVA 81 (323)
T ss_pred hhhhhhhhhhccccccceechhcCCcCccchhhcchhhhHHhhhhhhHhhhhhhhhcCCCCcccccccc--------hhh
Confidence 3454 35899999999999998762 322 788999999999999999999999996 444322 122
Q ss_pred HHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEE
Q 017200 201 KLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKT 279 (375)
Q Consensus 201 ~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt 279 (375)
.+.. +|++.--.+++.-.-....+-.+.++|++.++..+++- ..-+.++- ++..+...+.-++.+.+..-.-..+.+
T Consensus 82 g~~~-l~gLks~~ITtng~vl~R~lp~lhkaglssiNiSldtl~~aKfa~~~-rr~g~v~V~~~iq~a~~lgy~pvkvn~ 159 (323)
T KOG2876|consen 82 GLSS-LPGLKSIGITTNGLVLARLLPQLHKAGLSSINISLDTLVRAKFAKLT-RRKGFVKVWASIQLAIELGYNPVKVNC 159 (323)
T ss_pred hhhc-ccchhhhceeccchhhhhhhhHHHhhcccchhhhhhhhhHHHHHHHh-hhccHHHHHHHHhHHhhhCCCCcceee
Confidence 2211 12221111222111134677889999999999999975 46667776 688899999999999875432134555
Q ss_pred eEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 280 SIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 280 ~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
-+|=|+ .+.|+.+....-+...+|+..+ .||
T Consensus 160 v~~k~~--n~~ev~Dfv~~tr~~p~DVrfI-e~m 190 (323)
T KOG2876|consen 160 VVMKGL--NEDEVFDFVLLTRMRPLDVRFI-EFM 190 (323)
T ss_pred EEEecc--CCCcccceeeecCCCCcceEEE-Eec
Confidence 555555 4455666666666666776655 455
|
|
| >COG1244 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.1e-05 Score=77.25 Aligned_cols=173 Identities=18% Similarity=0.333 Sum_probs=119.5
Q ss_pred cEEEEeeeCCccC----CCCcCCCCCCCCCCCCCCcchHHHHHHHHHhc-C--CcE---EEEEeee---CCCCCcccHHH
Q 017200 128 ATATIMILGDTCT----RGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW-G--LDY---VVITSVD---RDDLADQGSGH 194 (375)
Q Consensus 128 ~tatfm~i~d~C~----~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~~-G--~~e---IvLTsgd---r~dl~d~G~~~ 194 (375)
++.|++.-+.||. .+|.+|+......+.+.+.+++.+....+.+. . .++ -++|||- ....|+ +-
T Consensus 46 k~l~vILrT~GC~w~~~~gC~MCgY~~d~~~~~vs~E~l~~qfd~~~~k~~~~~~~~~vkIFTSGSFLD~~EVP~---e~ 122 (358)
T COG1244 46 KSLTVILRTRGCRWYREGGCYMCGYPADSAGEPVSEENLINQFDEAYSKYEGKFDEFVVKIFTSGSFLDPEEVPR---EA 122 (358)
T ss_pred ceEEEEEecCCcceeccCCcceeccccccCCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEcccccCChhhCCH---HH
Confidence 4667777788885 46999999876445678888888877665432 2 223 3678883 333453 22
Q ss_pred HHHHHHHHHHhC--CCcEEEeecCCCCCChHHHHHHHHc--Cccc-ccccccchH-HHH-HHhcCCCCCHHHHHHHHHHH
Q 017200 195 FAQTVRKLKELK--PNMLIEALVPDFRGNNGCVREVAKS--GLNV-FAHNIETVE-ELQ-SAVRDHRANFKQSLDVLMMA 267 (375)
Q Consensus 195 ~~~lir~Ik~~~--p~i~Ie~l~pd~~g~~e~l~~L~~a--Gldv-~~hnlEtv~-rl~-~~mr~r~~s~~~~l~vl~~a 267 (375)
-..+++.|.+.. -.+.|| .-|+|. ++|.|+++.+. |..+ ++.++||++ ++. ..|+ .+-+++++++..+.+
T Consensus 123 R~~Il~~is~~~~v~~vvvE-SRpE~I-~eE~l~e~~~il~gk~~EvaIGLETanD~ire~sIN-KGftF~df~~A~~~i 199 (358)
T COG1244 123 RRYILERISENDNVKEVVVE-SRPEFI-REERLEEITEILEGKIVEVAIGLETANDKIREDSIN-KGFTFEDFVRAAEII 199 (358)
T ss_pred HHHHHHHHhhccceeEEEee-cCchhc-CHHHHHHHHHhhCCceEEEEEecccCcHHHHHHhhh-cCCcHHHHHHHHHHH
Confidence 234455555431 234444 457776 78888888876 4432 688899986 777 5688 799999999999999
Q ss_pred HHhCCCCceEEEeEEEec-----CCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 268 KDYVPAGTLTKTSIMLGC-----GETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 268 k~~~p~Gl~tkt~imvGl-----GET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
|+ .|+.++|.+|+=. .|..+|++.++. ..+-+.|.|.|-
T Consensus 200 r~---~g~~vktYlllKP~FlSE~eAI~D~i~Si~-~~~~~~d~iSin 243 (358)
T COG1244 200 RN---YGAKVKTYLLLKPPFLSEKEAIEDVISSIV-AAKPGTDTISIN 243 (358)
T ss_pred HH---cCCceeEEEEecccccChHHHHHHHHHHHH-HhccCCCeEEec
Confidence 98 5789999999865 455567777777 445577888884
|
|
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.2e-05 Score=71.97 Aligned_cols=147 Identities=19% Similarity=0.285 Sum_probs=115.4
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
.++.++..+.++.+.+.|+++|-++++..+..... .....+.++.+++..|++.+.++... ..+.++.++++|++.
T Consensus 15 ~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~-~~~~~~~i~~l~~~~~~~~~~~l~~~---~~~~i~~a~~~g~~~ 90 (265)
T cd03174 15 TFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQ-MEDDWEVLRAIRKLVPNVKLQALVRN---REKGIERALEAGVDE 90 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccCcCcccccc-CCCHHHHHHHHHhccCCcEEEEEccC---chhhHHHHHhCCcCE
Confidence 47999999999999999999999999976422100 12256788888887777888777653 267899999999999
Q ss_pred ccccccchHHHHHHh--c-CCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC--CCHHHHHHHHHHHHHcCCcEEeee
Q 017200 236 FAHNIETVEELQSAV--R-DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG--ETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 236 ~~hnlEtv~rl~~~m--r-~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlG--ET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
+...+.+++ .+.+. + ++...++..++.++.+++ .|+.+..+++.-++ .+.+++.+.++.+.++|++.|.+.
T Consensus 91 i~i~~~~s~-~~~~~~~~~~~~~~~~~~~~~i~~a~~---~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~ 166 (265)
T cd03174 91 VRIFDSASE-THSRKNLNKSREEDLENAEEAIEAAKE---AGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLK 166 (265)
T ss_pred EEEEEecCH-HHHHHHhCCCHHHHHHHHHHHHHHHHH---CCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 988887776 22222 2 222367888889999998 57888888888888 999999999999999999998874
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00018 Score=72.54 Aligned_cols=199 Identities=13% Similarity=0.173 Sum_probs=125.6
Q ss_pred eCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHhc-----------------CCcEEEEEeeeCCCCCcccHHHHHH
Q 017200 135 LGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW-----------------GLDYVVITSVDRDDLADQGSGHFAQ 197 (375)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~~-----------------G~~eIvLTsgdr~dl~d~G~~~~~~ 197 (375)
-+-||..+|+||+-.+.+-...|+..||+..+..+.+. .++.||+-|.--| ..-|-.
T Consensus 113 SQvGC~mgC~FCaTG~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMGMGEP------L~Nydn 186 (371)
T PRK14461 113 TQAGCGMGCVFCATGTLGLLRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMGMGEP------FANYDR 186 (371)
T ss_pred ccCCccCCCCcccCCCCCcccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEccCCc------hhhHHH
Confidence 36799999999987654322359999999988766431 2678888775333 223445
Q ss_pred HHHHHHHhC-CC------cEEEeecCCCCCChHHHHHHHHcCccc-ccccccch-HHHHHHhcC--CCCCHHHHHHHHHH
Q 017200 198 TVRKLKELK-PN------MLIEALVPDFRGNNGCVREVAKSGLNV-FAHNIETV-EELQSAVRD--HRANFKQSLDVLMM 266 (375)
Q Consensus 198 lir~Ik~~~-p~------i~Ie~l~pd~~g~~e~l~~L~~aGldv-~~hnlEtv-~rl~~~mr~--r~~s~~~~l~vl~~ 266 (375)
++++|+-.. |. -+|.+++-. -...++.|.+.++.+ ++..+... ++++.++-| +++..++-++.++.
T Consensus 187 V~~ai~il~d~~g~~is~R~ITVST~G---ivp~I~~la~~~~~v~LAiSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~ 263 (371)
T PRK14461 187 WWQAVERLHDPQGFNLGARSMTVSTVG---LVKGIRRLANERLPINLAISLHAPDDALRSELMPVNRRYPIADLMAATRD 263 (371)
T ss_pred HHHHHHHhcCccccCcCCCceEEEeec---chhHHHHHHhcccCceEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHH
Confidence 555554332 21 134444422 346678888766542 44455544 588888776 68888888888877
Q ss_pred HHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcC-----CcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHh
Q 017200 267 AKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAG-----VDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEM 341 (375)
Q Consensus 267 ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelg-----vd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~ 341 (375)
.-+....-+.+.=-+|=|.-.++||..+..+.|+.++ ...|.+-+| .|. .+.+..+ ...++.+.+.++-.+.
T Consensus 264 y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~-Np~-~~~~~~~-ps~~~i~~F~~~L~~~ 340 (371)
T PRK14461 264 YIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNLIPW-NPV-PGTPLGR-SERERVTTFQRILTDY 340 (371)
T ss_pred HHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEEecC-CCC-CCCCCCC-CCHHHHHHHHHHHHHC
Confidence 7654333233444555577999999999999999872 235666555 342 2333222 4566777777777777
Q ss_pred hhhh
Q 017200 342 GFRY 345 (375)
Q Consensus 342 gf~~ 345 (375)
|...
T Consensus 341 gi~v 344 (371)
T PRK14461 341 GIPC 344 (371)
T ss_pred CceE
Confidence 7654
|
|
| >COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.6e-05 Score=75.72 Aligned_cols=198 Identities=14% Similarity=0.231 Sum_probs=118.5
Q ss_pred CccCCCCcCCCCCC---CCCCCCCCcchHHHHHHHHHhcCCcEEEEEeeeC-CCCCcccHHHHHHHHHHHHHhCCCcEEE
Q 017200 137 DTCTRGCRFCNVKT---SRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDR-DDLADQGSGHFAQTVRKLKELKPNMLIE 212 (375)
Q Consensus 137 d~C~~~C~FC~v~~---~r~~~~ld~eEi~~~a~al~~~G~~eIvLTsgdr-~dl~d~G~~~~~~lir~Ik~~~p~i~Ie 212 (375)
.+|+.+|-||.-.- .+.....+++++.++...+.+.|.+-|-++||+. +. ...+++.++.+....|.+.-.
T Consensus 126 sgCnfrCVfCQNwdISq~~~g~~v~~e~La~i~~~~~~~GakNvN~Vgg~Ptp~-----lp~Ile~l~~~~~~iPvvwNS 200 (335)
T COG1313 126 SGCNFRCVFCQNWDISQFGIGKEVTPEDLAEIILELRRHGAKNVNFVGGDPTPH-----LPFILEALRYASENIPVVWNS 200 (335)
T ss_pred cCcceEEEEecCccccccCCCeEecHHHHHHHHHHHHHhcCcceeecCCCCCCc-----hHHHHHHHHHHhcCCCEEEec
Confidence 49999999997543 2212248999999999999999999999999974 22 334667776665555543332
Q ss_pred eecCCCCCChHHHHHHHHcCccccccccc-chHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCC-HH
Q 017200 213 ALVPDFRGNNGCVREVAKSGLNVFAHNIE-TVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGET-PD 290 (375)
Q Consensus 213 ~l~pd~~g~~e~l~~L~~aGldv~~hnlE-tv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET-~e 290 (375)
- .+. +.|.++.|... +|+|-.-+- ..++.-.+...-+-=|+-..+.+..+.+..+ |+.+.-=+|=|+-|. -.
T Consensus 201 n---mY~-s~E~l~lL~gv-VDiyL~DfKYgNdeca~kySkvp~Y~eVv~rn~~~~~~~~g-~~iiRHLVlPghlecCTk 274 (335)
T COG1313 201 N---MYM-SEETLKLLDGV-VDIYLPDFKYGNDECAEKYSKVPNYWEVVTRNILEAKEQVG-GLIIRHLVLPGHLECCTK 274 (335)
T ss_pred C---Ccc-CHHHHHHhhcc-ceeeecccccCCHHHHHHhhcCCchHHHHHHHHHHHHHhcC-ceEEEEEecCCchhhccH
Confidence 1 121 56666665443 566532221 1122222222111123444444555555432 477787788888766 55
Q ss_pred HHHHHHHHHHHcCCcEEeeecCCCCCCCC--C-CccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 291 QVVSTMEKVRAAGVDVMTFGQYMRPSKRH--M-PVSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 291 e~~etl~~Lrelgvd~v~i~qYl~P~~~~--~-~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
.+++-+...--..+-+--++|| +|.-+. . .+.+.++.++.+...++|++.||...
T Consensus 275 pI~~wiae~~g~~~~vNiM~QY-~P~ykA~eypeI~R~lt~eE~e~a~~~a~~~gl~~~ 332 (335)
T COG1313 275 PILRWIAENLGNDVRVNIMFQY-RPEYKAEEYPEINRRLTREEYEKALEYAEKLGLTNI 332 (335)
T ss_pred HHHHHHHHhCCCCeeEEehhhc-cchhhhhhchhhcccCCHHHHHHHHHHHHHcCCcee
Confidence 5554443322222223334566 574433 2 36777899999999999999998653
|
|
| >PRK10076 pyruvate formate lyase II activase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00021 Score=67.13 Aligned_cols=180 Identities=8% Similarity=0.047 Sum_probs=126.8
Q ss_pred CCCcchHHHHHHHHHh---cCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcC
Q 017200 156 PPDPDEPTNVAEAIAS---WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSG 232 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~---~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aG 232 (375)
.++++|+++.++.-.. .+-.-|++|||+---. .+.+.++++.+|+. ++++.+-+-.+. +.+.++.+...
T Consensus 18 ~~t~eel~~~~~~~~~f~~~sggGVt~SGGEPllq----~~fl~~l~~~~k~~--gi~~~leTnG~~-~~~~~~~l~~~- 89 (213)
T PRK10076 18 DITLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQ----AEFATRFLQRLRLW--GVSCAIETAGDA-PASKLLPLAKL- 89 (213)
T ss_pred ccCHHHHHHHHHhhhHhhcCCCCEEEEeCchHHcC----HHHHHHHHHHHHHc--CCCEEEECCCCC-CHHHHHHHHHh-
Confidence 3789999988776433 2556899999974221 34567889999875 566655444332 56777777654
Q ss_pred cccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeec
Q 017200 233 LNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 311 (375)
Q Consensus 233 ldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~q 311 (375)
+|.+..-+=.. ++.|+++. +.+.+..++.++.+.+.... +.+.+-+|=|+--++|++....+++++++++.+.+.+
T Consensus 90 ~D~~l~DiK~~d~~~~~~~t--G~~~~~il~nl~~l~~~g~~-v~iR~~vIPg~nd~~e~i~~ia~~l~~l~~~~~~llp 166 (213)
T PRK10076 90 CDEVLFDLKIMDATQARDVV--KMNLPRVLENLRLLVSEGVN-VIPRLPLIPGFTLSRENMQQALDVLIPLGIKQIHLLP 166 (213)
T ss_pred cCEEEEeeccCCHHHHHHHH--CCCHHHHHHHHHHHHhCCCc-EEEEEEEECCCCCCHHHHHHHHHHHHHcCCceEEEec
Confidence 56554444333 58888887 46789999999999885433 6779999999988999999999999999888888766
Q ss_pred CCCCCCC--------CCCcc--ccCCHHHHHHHHHHHHHhhhhhhc
Q 017200 312 YMRPSKR--------HMPVS--EYITPEAFERYRALGMEMGFRYVA 347 (375)
Q Consensus 312 Yl~P~~~--------~~~v~--~~v~pe~~~~l~~~a~~~gf~~~~ 347 (375)
|- |-.. ..++. ...+++..+.+++++.+.|+.++.
T Consensus 167 yh-~~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 167 FH-QYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred CC-ccchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEEe
Confidence 63 3110 11221 224567888899999998987653
|
|
| >COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00013 Score=71.80 Aligned_cols=170 Identities=17% Similarity=0.240 Sum_probs=106.7
Q ss_pred eCCccCCCCcCCCCCCCCC--CC---CCCcch-HHHHHHH-HHhcCC--cEEEEEeeeCCCCCcccHHHHHHHHHHHHHh
Q 017200 135 LGDTCTRGCRFCNVKTSRA--PP---PPDPDE-PTNVAEA-IASWGL--DYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205 (375)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~--~~---~ld~eE-i~~~a~a-l~~~G~--~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~ 205 (375)
..-||..+|.||-...... +. .+..++ +.+.++. +.+.|- ..|.+.+...+..|..-...+..-+..+...
T Consensus 35 py~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~el~~~~~k~~~i~is~~TDpyqp~E~~~~ltR~ilei~~~ 114 (297)
T COG1533 35 PYRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERELRKPGPKRTVIAISSVTDPYQPIEKEYRLTRKILEILLK 114 (297)
T ss_pred CcCCCCCCCceeecccccccccCCCceeeechhHHHHHHHHHhhccCCceEEEEecCCCCCCcchHHHHHHHHHHHHHHH
Confidence 3569999999998875321 11 135555 5555544 443333 4555555555555632112222222223222
Q ss_pred C-CCcEEEeecCCCCCChHHHHHHHHcCcccccccccchH-HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEE
Q 017200 206 K-PNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIML 283 (375)
Q Consensus 206 ~-p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imv 283 (375)
+ ..+.|..=++-...|.+.|..+..-+.-.+...+-|.+ ++-+.+-|+-.+.+.++++++.+.+ .|+ .+++++
T Consensus 115 ~~~~v~I~TKS~lv~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~e---aGi--~~~v~v 189 (297)
T COG1533 115 YGFPVSIVTKSALVLRDLDLLLELAERGKVRVAVSITTLDEELAKILEPRAPSPEERLEALKELSE---AGI--PVGLFV 189 (297)
T ss_pred cCCcEEEEECCcchhhhHHHHHhhhhccceEEEEEeecCcHHHHHhcCCCCcCHHHHHHHHHHHHH---CCC--eEEEEE
Confidence 2 12344332232223556777776665555666666655 6888888888899999999999999 685 556666
Q ss_pred e--c-CCCHHHHHHHHHHHHHcCCcEEee
Q 017200 284 G--C-GETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 284 G--l-GET~ee~~etl~~Lrelgvd~v~i 309 (375)
+ + |.+|+|+.+.+..+.+.|+..+..
T Consensus 190 ~PIiP~~~d~e~e~~l~~~~~ag~~~v~~ 218 (297)
T COG1533 190 APIIPGLNDEELERILEAAAEAGARVVVY 218 (297)
T ss_pred ecccCCCChHHHHHHHHHHHHcCCCeeEe
Confidence 5 3 889999999999999999987665
|
|
| >COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00022 Score=71.23 Aligned_cols=179 Identities=18% Similarity=0.323 Sum_probs=116.5
Q ss_pred ChhhhhhhcCCCCcccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCCCC--CCCCcchHHHHHHHHHhc-CCcEEEE
Q 017200 103 KLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAP--PPPDPDEPTNVAEAIASW-GLDYVVI 179 (375)
Q Consensus 103 ~L~tvceeA~cpn~~ec~~~~~~~~~tatfm~i~d~C~~~C~FC~v~~~r~~--~~ld~eEi~~~a~al~~~-G~~eIvL 179 (375)
...-++|...+|--+- -|-+.....|+.+++|.-.|+||--+..-+. ..+.++++....+.+++. -+++|+|
T Consensus 90 ~~Dpl~E~~~s~Vpgl-----~HrY~drvLll~t~~C~vyCRyCfRr~~~~~~~~~~~~~~~~~al~YIa~hPeI~eVll 164 (369)
T COG1509 90 SEDPLGEDDSSPVPGL-----THRYPDRVLLLVTGVCAVYCRYCFRRRFVGQDNQGFNKEEWDKALDYIAAHPEIREVLL 164 (369)
T ss_pred ccCcccccccCCCCCc-----eeecCCeEEEEecCcccceeeecccccccccccccCCHHHHHHHHHHHHcCchhheEEe
Confidence 3445666666655441 1235567788899999999999987764222 126788888888888776 4699999
Q ss_pred EeeeCCCCCcccHHHHHHHHHHHHHhCCC---cEEEe----ecCCCCCChHHHHHHHHcCcccc--cccccchHHHHHHh
Q 017200 180 TSVDRDDLADQGSGHFAQTVRKLKELKPN---MLIEA----LVPDFRGNNGCVREVAKSGLNVF--AHNIETVEELQSAV 250 (375)
Q Consensus 180 Tsgdr~dl~d~G~~~~~~lir~Ik~~~p~---i~Ie~----l~pd~~g~~e~l~~L~~aGldv~--~hnlEtv~rl~~~m 250 (375)
||||---+.| ..+..++++|++. |. ++|.. +.|.-+ +++.++.|.+++..++ .| +....++.+..
T Consensus 165 SGGDPL~ls~---~~L~~ll~~L~~I-pHv~iiRi~TR~pvv~P~RI-t~~L~~~l~~~~~~v~~~tH-~NHp~Eit~e~ 238 (369)
T COG1509 165 SGGDPLSLSD---KKLEWLLKRLRAI-PHVKIIRIGTRLPVVLPQRI-TDELCEILGKSRKPVWLVTH-FNHPNEITPEA 238 (369)
T ss_pred cCCCccccCH---HHHHHHHHHHhcC-CceeEEEeecccceechhhc-cHHHHHHHhccCceEEEEcc-cCChhhcCHHH
Confidence 9999776765 4567777777654 33 34433 334322 5677777777555442 22 22233443333
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCCceE--EEeEEEecCCCHHHHHHHHHHHHHcCCc
Q 017200 251 RDHRANFKQSLDVLMMAKDYVPAGTLT--KTSIMLGCGETPDQVVSTMEKVRAAGVD 305 (375)
Q Consensus 251 r~r~~s~~~~l~vl~~ak~~~p~Gl~t--kt~imvGlGET~ee~~etl~~Lrelgvd 305 (375)
+ +.++.+++ .|+.+ -|=++=|...+.+-+.+.++.|-++|+-
T Consensus 239 ~----------~A~~~L~~---aGv~l~NQsVLLrGVND~~evl~~L~~~L~~~gV~ 282 (369)
T COG1509 239 R----------EACAKLRD---AGVPLLNQSVLLRGVNDDPEVLKELSRALFDAGVK 282 (369)
T ss_pred H----------HHHHHHHH---cCceeecchheecccCCCHHHHHHHHHHHHHcCCc
Confidence 2 55566666 46644 4456668898999999999999999964
|
|
| >COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0016 Score=66.21 Aligned_cols=189 Identities=13% Similarity=0.140 Sum_probs=121.6
Q ss_pred CCc-cCCCCcCCCCCCCCCCC-CCCcchHHHHHHHHHhc-CCcE--EEEEeeeCCCCCcccHHHHHHHHHHHHHhC-CCc
Q 017200 136 GDT-CTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASW-GLDY--VVITSVDRDDLADQGSGHFAQTVRKLKELK-PNM 209 (375)
Q Consensus 136 ~d~-C~~~C~FC~v~~~r~~~-~ld~eEi~~~a~al~~~-G~~e--IvLTsgdr~dl~d~G~~~~~~lir~Ik~~~-p~i 209 (375)
+.. |+.+|.||-........ .++.+.+++.++.+.+. +.+. |...||..- |. ...|.+.+..+.+++ .+.
T Consensus 14 t~~~CNL~C~YC~~~~~~~~~~~Ms~etle~~i~~~~~~~~~~~v~~~w~GGEPl-L~---~~~f~~~~~~l~~k~~~~~ 89 (378)
T COG0641 14 TGFECNLDCKYCFYLEKESLQRIMSDETLEEYVRQYIAASNGDKVTFTWQGGEPL-LA---GLDFYRKAVALQQKYANGK 89 (378)
T ss_pred ccCccCCCCCeeCcccCCCCCCCCCHHHHHHHHHHHHhhCCCCeeEEEEECCccc-cc---hHHHHHHHHHHHHHHhcCC
Confidence 344 99999999988643222 48888888888887655 4466 777788632 21 123445555544433 244
Q ss_pred EEE--eecCCCCCChHHHHHHHHcCcccccccccchHHHHHHhc---CCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEe
Q 017200 210 LIE--ALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVR---DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG 284 (375)
Q Consensus 210 ~Ie--~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr---~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvG 284 (375)
.|. +.+-...-+++..+.|++.+. .+...||..+++..+.| ..+.|++..++-|+.+++. ++.+.+.+.
T Consensus 90 ~i~~siqTNg~LL~~e~~e~l~~~~~-~IgISiDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~~---~v~~~~~~v-- 163 (378)
T COG0641 90 TISNALQTNGTLLNDEWAEFLAEHDF-LIGISIDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQAH---GVDFNTLTV-- 163 (378)
T ss_pred eeEEEEEEcccccCHHHHHHHHhcCc-eEEEeccCchHhccccccCCCCCccHHHHHHHHHHHHHc---CCcEEEEEE--
Confidence 444 222222227888999999998 78888888766666655 2478899999999999993 455555555
Q ss_pred c-CCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCC-C-ccccCCHHHHHHHH
Q 017200 285 C-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHM-P-VSEYITPEAFERYR 335 (375)
Q Consensus 285 l-GET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~-~-v~~~v~pe~~~~l~ 335 (375)
+ -++.+...+.+++|.+.+...+-|.+-+ +..... + ....++++++..+.
T Consensus 164 v~~~n~~~~~ei~~~l~~~g~~~i~fip~~-~~~~~~~~~~~~~~~~~~~~~fl 216 (378)
T COG0641 164 VNRQNVLHPEEIYHFLKSEGSKFIQFIPLV-ESDNRGDSLLEFSVTAEEYGQFL 216 (378)
T ss_pred EchhHhhCHHHHHHHHHHcccceEEEEecc-cCCCCCccccccccCHHHHHHHH
Confidence 4 6778888888899999986666552222 222222 2 23446676655543
|
|
| >PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A | Back alignment and domain information |
|---|
Probab=97.83 E-value=5.1e-05 Score=65.00 Aligned_cols=70 Identities=16% Similarity=0.323 Sum_probs=46.8
Q ss_pred CCccCCCCcCCCCCCCCCCC---CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC
Q 017200 136 GDTCTRGCRFCNVKTSRAPP---PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (375)
Q Consensus 136 ~d~C~~~C~FC~v~~~r~~~---~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p 207 (375)
+++|+.+|.||..+...... .++.+.+.+.++.+.+.++..|.++||+ |-+. .+...+.++++.+++..+
T Consensus 12 t~~Cnl~C~yC~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~i~l~GGE-Pll~-~~~~~l~~i~~~~k~~~~ 84 (139)
T PF13353_consen 12 TNGCNLRCKYCFNSEIWKFKRGKELSEEIIEEIIEELKNYGIKGIVLTGGE-PLLH-ENYDELLEILKYIKEKFP 84 (139)
T ss_dssp EC--SB--TT-TTCCCS-TT-SEEC-HHHHHHHCHHHCCCCCCEEEEECST-GGGH-HSHHHHHHHHHHHHHTT-
T ss_pred cCcccccCcCcCCcccCcccccccccchhhhhhhhHHhcCCceEEEEcCCC-eeee-ccHhHHHHHHHHHHHhCC
Confidence 78899999999876543221 2676777777888888999999999987 3331 125779999999999876
|
|
| >TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00034 Score=66.51 Aligned_cols=132 Identities=10% Similarity=0.072 Sum_probs=79.7
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCC--CC--C--CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHH
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSR--AP--P--PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKL 202 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r--~~--~--~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~I 202 (375)
.+.|+ -..+|+.+|.||..+..- .. . .++.+|+++.++.+...|++.|+||||+---. .++.++++.+
T Consensus 23 ~~~Fv-R~~gCNlrC~~Cdt~~~~~~~~~~~~~~~s~~ei~~~i~~~~~~~~~~V~lTGGEPll~-----~~l~~li~~l 96 (238)
T TIGR03365 23 KTMFV-RTGGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALGGGTPLHVSLSGGNPALQ-----KPLGELIDLG 96 (238)
T ss_pred eEEEE-EeCCcCCcCcCCCCccccCcccCCccccCCHHHHHHHHHHHhCCCCCeEEEeCCchhhh-----HhHHHHHHHH
Confidence 34444 467999999999876421 11 1 27889999998888777899999999973211 2477888888
Q ss_pred HHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEE
Q 017200 203 KELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIM 282 (375)
Q Consensus 203 k~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~im 282 (375)
++. ++.+.+.+-... ..+ .+.+ +|.+...+...+. . ....++...+.++.+++ |..+...++
T Consensus 97 ~~~--g~~v~leTNGtl-~~~---~l~~--~d~v~vs~K~~~s-----g-~~~~~~~~~~~ik~l~~----~~~~~vK~V 158 (238)
T TIGR03365 97 KAK--GYRFALETQGSV-WQD---WFRD--LDDLTLSPKPPSS-----G-METDWQALDDCIERLDD----GPQTSLKVV 158 (238)
T ss_pred HHC--CCCEEEECCCCC-cHH---HHhh--CCEEEEeCCCCCC-----C-CCCcHHHHHHHHHHhhh----cCceEEEEE
Confidence 875 455554443221 112 2322 4444443332211 1 12347777777777776 245556666
Q ss_pred Ee
Q 017200 283 LG 284 (375)
Q Consensus 283 vG 284 (375)
|+
T Consensus 159 v~ 160 (238)
T TIGR03365 159 VF 160 (238)
T ss_pred EC
Confidence 66
|
This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine. |
| >COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00063 Score=69.08 Aligned_cols=142 Identities=15% Similarity=0.197 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHhC--CCcEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHh
Q 017200 194 HFAQTVRKLKELK--PNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDY 270 (375)
Q Consensus 194 ~~~~lir~Ik~~~--p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~ 270 (375)
|+.+.++.....+ +++++.-+.+.+.-+.+..+.+.++|+|-+...+.|. +++++++- +....++.++.|+...+
T Consensus 95 ~le~~~~r~~~~~~d~~~rL~~tsG~~~~lt~~~~~i~~~gvdev~~SVhtT~p~lR~klm-~n~~A~~~le~L~~f~~- 172 (414)
T COG1625 95 DLEPRGRRARLYYKDDDIRLSFTSGSGFTLTNRAERIIDAGVDEVYFSVHTTNPELRAKLM-KNPNAEQLLELLRRFAE- 172 (414)
T ss_pred chhhhhhHHHhhcCCccceeeeeeccceeccchHHHHHHcCCCeeEEEEeeCCHHHHHHHh-cCCcHHHHHHHHHHHHH-
Confidence 3567777777665 4467777777665577888889999999999988754 59998876 57788999999999988
Q ss_pred CCCCceEEEeEEEecCCC-HHHHHHHHHHHHHcCCcEEeeecCCCC---CCCCCCccccCCHHHHHHHHHHHHH
Q 017200 271 VPAGTLTKTSIMLGCGET-PDQVVSTMEKVRAAGVDVMTFGQYMRP---SKRHMPVSEYITPEAFERYRALGME 340 (375)
Q Consensus 271 ~p~Gl~tkt~imvGlGET-~ee~~etl~~Lrelgvd~v~i~qYl~P---~~~~~~v~~~v~pe~~~~l~~~a~~ 340 (375)
.++.+-+.+++==|=+ -+++.+|+.+|.+.|...+.+.. ..| +.-..++.+.++|++.+++++++++
T Consensus 173 --~~~~v~a~iVl~PGvNdge~L~kT~~dL~~~g~~~~~~~~-~~pvGlt~~n~~~i~~~t~~~l~~~k~i~re 243 (414)
T COG1625 173 --RCIEVHAQIVLCPGVNDGEELEKTLEDLEEWGAHEVILMR-VVPVGLTRYNRPGIRPPTPHELEEFKEIVRE 243 (414)
T ss_pred --hhhheeeEEEEcCCcCcHHHHHHHHHHHHHhCcCceeEEE-eecceeeecCCCCCCCCCHHHHHHHHHHHHH
Confidence 4567888888755766 88999999999999987666643 235 2222336677889888888766554
|
|
| >PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0013 Score=64.32 Aligned_cols=141 Identities=19% Similarity=0.266 Sum_probs=105.2
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCC-CCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD-LADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLN 234 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~d-l~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (375)
.++.++.++.++.+.+.|+++|-+++-..+. .|..+ .-.+.++.|.+ .++..+..+.+ +.+.++...++|+|
T Consensus 22 ~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~--d~~e~~~~l~~-~~~~~~~~l~~----~~~~ie~A~~~g~~ 94 (287)
T PRK05692 22 FIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMA--DAAEVMAGIQR-RPGVTYAALTP----NLKGLEAALAAGAD 94 (287)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccccc--cHHHHHHhhhc-cCCCeEEEEec----CHHHHHHHHHcCCC
Confidence 4899999999999999999999988665554 33311 12467777765 46677777765 56778999999999
Q ss_pred cccccccchHH-HHHHhcCCCCCHHHH----HHHHHHHHHhCCCCceEEEeEEEecC---C---CHHHHHHHHHHHHHcC
Q 017200 235 VFAHNIETVEE-LQSAVRDHRANFKQS----LDVLMMAKDYVPAGTLTKTSIMLGCG---E---TPDQVVSTMEKVRAAG 303 (375)
Q Consensus 235 v~~hnlEtv~r-l~~~mr~r~~s~~~~----l~vl~~ak~~~p~Gl~tkt~imvGlG---E---T~ee~~etl~~Lrelg 303 (375)
.+...+.+++. ....++ .+.++. .++++.+++ .|+.+..+|+.-+| + +++.+.+..+.+.+.|
T Consensus 95 ~v~i~~~~s~~~~~~n~~---~~~~e~l~~~~~~v~~ak~---~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G 168 (287)
T PRK05692 95 EVAVFASASEAFSQKNIN---CSIAESLERFEPVAEAAKQ---AGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALG 168 (287)
T ss_pred EEEEEEecCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---cCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcC
Confidence 99888777773 344443 456664 456677777 57888888887664 2 6788999999999999
Q ss_pred CcEEee
Q 017200 304 VDVMTF 309 (375)
Q Consensus 304 vd~v~i 309 (375)
++.|.|
T Consensus 169 ~d~i~l 174 (287)
T PRK05692 169 CYEISL 174 (287)
T ss_pred CcEEEe
Confidence 999887
|
|
| >PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A | Back alignment and domain information |
|---|
Probab=97.62 E-value=6.3e-05 Score=62.98 Aligned_cols=80 Identities=20% Similarity=0.315 Sum_probs=44.6
Q ss_pred eCCccCCCCcCCCCCCCCCC---CCCCcchHHHHHHHHHhcCC--cEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCc
Q 017200 135 LGDTCTRGCRFCNVKTSRAP---PPPDPDEPTNVAEAIASWGL--DYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM 209 (375)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~~---~~ld~eEi~~~a~al~~~G~--~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i 209 (375)
.+++|+.+|.||........ ..++.+++.+.++.+...+. ..|.||||+.-=..+ ...+.++++.+++..|.+
T Consensus 4 ~t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~GGEPll~~~--~~~l~~~i~~~~~~~~~~ 81 (119)
T PF13394_consen 4 RTSGCNLRCSYCYNKSSWSPKKGEEMSIEELEEIIDELKEKGFRPSTVVFTGGEPLLYLN--PEDLIELIEYLKERGPEI 81 (119)
T ss_dssp --S--S---TTTS-TTTSST-GGGS--HHHHHHHHHHHHHTT----EEEEESSSGGGSTT--HHHHHHHHCTSTT-----
T ss_pred ccCCcCCCCccCCcCccCCCccCCcccHhHHHHHHHHHHhcCCceEEEEEECCCCccccC--HHHHHHHHHHHHhhCCCc
Confidence 47899999999997543211 23788889898888888877 679999986321122 456888998888887777
Q ss_pred EEEeecC
Q 017200 210 LIEALVP 216 (375)
Q Consensus 210 ~Ie~l~p 216 (375)
.|.+.+-
T Consensus 82 ~i~i~TN 88 (119)
T PF13394_consen 82 KIRIETN 88 (119)
T ss_dssp EEEEEE-
T ss_pred eEEEEeC
Confidence 7777664
|
|
| >TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00046 Score=61.18 Aligned_cols=96 Identities=13% Similarity=0.140 Sum_probs=63.9
Q ss_pred EEEEeeeCCccCCCCcCCCCCCC-CC--CCCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHh
Q 017200 129 TATIMILGDTCTRGCRFCNVKTS-RA--PPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~-r~--~~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~ 205 (375)
..++++.-.+|+.+|.||.-+.. .. ...++.+++.+.++... ..+..|+||||+ +- .+.+.++++.+++.
T Consensus 15 ~~~~~vfl~GCnlrC~~C~n~~~~~~~~g~~lt~eel~~~I~~~~-~~~~gVt~SGGE---l~---~~~l~~ll~~lk~~ 87 (147)
T TIGR02826 15 EYSLAFYITGCPLGCKGCHSPESWHLSEGTKLTPEYLTKTLDKYR-SLISCVLFLGGE---WN---REALLSLLKIFKEK 87 (147)
T ss_pred CEEEEEEeCCCCCCCCCCCChHHcCCCCCcCCCHHHHHHHHHHhC-CCCCEEEEechh---cC---HHHHHHHHHHHHHC
Confidence 45666666799999999988754 21 23588899988877764 246899999999 22 45688999999876
Q ss_pred CCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 206 KPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 206 ~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
++.+.+.+.-. .++..+.+.+. +|.+
T Consensus 88 --Gl~i~l~Tg~~--~~~~~~~il~~-iD~l 113 (147)
T TIGR02826 88 --GLKTCLYTGLE--PKDIPLELVQH-LDYL 113 (147)
T ss_pred --CCCEEEECCCC--CHHHHHHHHHh-CCEE
Confidence 45555555432 23344444332 4443
|
Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes. |
| >COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0064 Score=60.96 Aligned_cols=170 Identities=13% Similarity=0.206 Sum_probs=99.8
Q ss_pred CCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHh-cC------CcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC-C
Q 017200 136 GDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIAS-WG------LDYVVITSVDRDDLADQGSGHFAQTVRKLKELK-P 207 (375)
Q Consensus 136 ~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~-~G------~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~-p 207 (375)
+=||.-+|+||+.....--.-|+..||+..+..+.+ .| +..||+-|---|-+ ..+.....++.+.... .
T Consensus 108 QvGC~~~C~FCaTg~~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEPl~---N~dnV~~a~~i~~~~~G~ 184 (349)
T COG0820 108 QVGCPVGCTFCATGQGGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEPLL---NLDNVVKALEIINDDEGL 184 (349)
T ss_pred CCCcCCCCCeeccccccceeccCHHHHHHHHHHHHHhcCccccceeeeEEEecCCchhh---hHHHHHHHHHhhcCcccc
Confidence 569999999999876432224899999988877652 22 45677766433311 1333333343333221 1
Q ss_pred Cc---EEEeecCCCCCChHHHHHHHHcCccc-ccccccch-HHHHHHhcC--CCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017200 208 NM---LIEALVPDFRGNNGCVREVAKSGLNV-FAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (375)
Q Consensus 208 ~i---~Ie~l~pd~~g~~e~l~~L~~aGldv-~~hnlEtv-~rl~~~mr~--r~~s~~~~l~vl~~ak~~~p~Gl~tkt~ 280 (375)
++ +|-+++..+ ...+.++.+..+++ ++.++.+. ++++..+-| ++++.+..++.++.-.+.....+..-=.
T Consensus 185 ~ls~R~iTvSTsGi---~~~I~~l~~~~~~v~LAiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~~rVt~EY~ 261 (349)
T COG0820 185 GLSKRRITVSTSGI---VPRIRKLADEQLGVALAISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSGRRVTFEYV 261 (349)
T ss_pred cccceEEEEecCCC---chhHHHHHhhcCCeEEEEecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccCceEEEEee
Confidence 12 233344333 34566676544443 45556654 477766554 5777788888877776654322333444
Q ss_pred EEEecCCCHHHHHHHHHHHHHcCCcEEeeecC
Q 017200 281 IMLGCGETPDQVVSTMEKVRAAGVDVMTFGQY 312 (375)
Q Consensus 281 imvGlGET~ee~~etl~~Lrelgvd~v~i~qY 312 (375)
+|=|.-...|+-.+..+.|+.+.+ .|.+-+|
T Consensus 262 Ll~~VND~~e~A~~L~~ll~~~~~-~VNLIP~ 292 (349)
T COG0820 262 LLDGVNDSLEHAKELAKLLKGIPC-KVNLIPY 292 (349)
T ss_pred ecccccCCHHHHHHHHHHhcCCCc-eEEEeec
Confidence 555567778888888888888876 4444344
|
|
| >cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.005 Score=59.87 Aligned_cols=144 Identities=19% Similarity=0.258 Sum_probs=103.1
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCC-CCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD-LADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLN 234 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~d-l~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (375)
.++.++-++.++++.+.|+++|-+.+.-.+. .|-. ....++++.|... ++..+.++.+ +.+.++...++|++
T Consensus 16 ~~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~--~d~~~~~~~l~~~-~~~~~~~~~~----~~~dv~~A~~~g~~ 88 (274)
T cd07938 16 FIPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQM--ADAEEVLAGLPRR-PGVRYSALVP----NLRGAERALAAGVD 88 (274)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCCCCccccccc--CCHHHHHhhcccC-CCCEEEEECC----CHHHHHHHHHcCcC
Confidence 4889999999999999999999998664443 3321 1123456666543 4577777764 56779999999999
Q ss_pred cccccccchH-HHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC-----C-CHHHHHHHHHHHHHcCCcE
Q 017200 235 VFAHNIETVE-ELQSAVRD-HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-----E-TPDQVVSTMEKVRAAGVDV 306 (375)
Q Consensus 235 v~~hnlEtv~-rl~~~mr~-r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlG-----E-T~ee~~etl~~Lrelgvd~ 306 (375)
.+...+.+++ .+...++. +....+...+.++.+++ .|+.+..+++.-+| . +.+.+++.++.+.+.|++.
T Consensus 89 ~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~---~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~~ 165 (274)
T cd07938 89 EVAVFVSASETFSQKNINCSIAESLERFEPVAELAKA---AGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLGCDE 165 (274)
T ss_pred EEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHH---CCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 9888777777 44445541 11233556667778888 57888888886663 3 5677889999999999999
Q ss_pred Eee
Q 017200 307 MTF 309 (375)
Q Consensus 307 v~i 309 (375)
|.+
T Consensus 166 i~l 168 (274)
T cd07938 166 ISL 168 (274)
T ss_pred EEE
Confidence 887
|
3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy |
| >PLN02746 hydroxymethylglutaryl-CoA lyase | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0089 Score=60.16 Aligned_cols=142 Identities=16% Similarity=0.196 Sum_probs=102.4
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCC-CCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD-LADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLN 234 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~d-l~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (375)
.++.++-++.++.+.+.|+++|-+++.-.+. .|- ...-.+.++.|++ .++..+.++.+ +.+.++...++|++
T Consensus 64 ~~s~e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPq--mad~~ev~~~i~~-~~~~~~~~l~~----n~~die~A~~~g~~ 136 (347)
T PLN02746 64 IVPTSVKVELIQRLVSSGLPVVEATSFVSPKWVPQ--LADAKDVMAAVRN-LEGARFPVLTP----NLKGFEAAIAAGAK 136 (347)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCcCcccccc--cccHHHHHHHHHh-ccCCceeEEcC----CHHHHHHHHHcCcC
Confidence 4899999999999999999999988754432 232 1123456666655 34566666665 67889999999999
Q ss_pred cccccccchHHHH-HHhcCCCCCHHHHH----HHHHHHHHhCCCCceEEEeEEEecC-----C-CHHHHHHHHHHHHHcC
Q 017200 235 VFAHNIETVEELQ-SAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIMLGCG-----E-TPDQVVSTMEKVRAAG 303 (375)
Q Consensus 235 v~~hnlEtv~rl~-~~mr~r~~s~~~~l----~vl~~ak~~~p~Gl~tkt~imvGlG-----E-T~ee~~etl~~Lrelg 303 (375)
.+...+-+++... ..++ .+.++.+ ++++.+++ .|+.+..+|..-|| . +.+.+++.++.+.+.|
T Consensus 137 ~v~i~~s~Sd~h~~~n~~---~t~~e~l~~~~~~v~~Ak~---~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~G 210 (347)
T PLN02746 137 EVAVFASASESFSKSNIN---CSIEESLVRYREVALAAKK---HSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMG 210 (347)
T ss_pred EEEEEEecCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---cCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcC
Confidence 9888887777433 3333 4566666 47777777 57888877765443 2 4677889999999999
Q ss_pred CcEEeee
Q 017200 304 VDVMTFG 310 (375)
Q Consensus 304 vd~v~i~ 310 (375)
++.|.|.
T Consensus 211 ad~I~l~ 217 (347)
T PLN02746 211 CYEISLG 217 (347)
T ss_pred CCEEEec
Confidence 9998873
|
|
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0068 Score=58.19 Aligned_cols=138 Identities=15% Similarity=0.194 Sum_probs=102.9
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
.++.++..+.++.+.+.|+++|-+.. +...+ . -.+.++.|.+..++..+-++.. .+.+.++...++|++.
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iE~g~---p~~~~---~-~~e~~~~l~~~~~~~~~~~~~r---~~~~~v~~a~~~g~~~ 85 (259)
T cd07939 16 AFSREEKLAIARALDEAGVDEIEVGI---PAMGE---E-EREAIRAIVALGLPARLIVWCR---AVKEDIEAALRCGVTA 85 (259)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEec---CCCCH---H-HHHHHHHHHhcCCCCEEEEecc---CCHHHHHHHHhCCcCE
Confidence 48899999999999999999998852 22221 1 1356777776556666666642 2567789999999999
Q ss_pred ccccccchH-HHHHHhcCCCCCHHHH----HHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 017200 236 FAHNIETVE-ELQSAVRDHRANFKQS----LDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 236 ~~hnlEtv~-rl~~~mr~r~~s~~~~----l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i 309 (375)
+...+-+++ .+...++ .+.++. .+.++.+++ .|+.+.-+++.+..-+++.+.+.++.+.+.|++.|.+
T Consensus 86 i~i~~~~s~~~~~~~~~---~~~~~~~~~~~~~i~~a~~---~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l 158 (259)
T cd07939 86 VHISIPVSDIHLAHKLG---KDRAWVLDQLRRLVGRAKD---RGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRF 158 (259)
T ss_pred EEEEEecCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---CCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEe
Confidence 888777776 5555655 344444 467778887 5787777777777778999999999999999999877
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >COG5014 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0022 Score=58.34 Aligned_cols=154 Identities=18% Similarity=0.231 Sum_probs=90.4
Q ss_pred CCccCCCCcCCCCCCCCCCC-----CCCcchHHHHHHHH-HhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCc
Q 017200 136 GDTCTRGCRFCNVKTSRAPP-----PPDPDEPTNVAEAI-ASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM 209 (375)
Q Consensus 136 ~d~C~~~C~FC~v~~~r~~~-----~ld~eEi~~~a~al-~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i 209 (375)
+-||+..|.||-....+.+. -++|+|+.+...++ ++.|.+.+.|+|+.. - .|.+|+.++|+-+-.. ..
T Consensus 48 ~VGCnl~CayCw~y~r~~~~~rag~f~~P~eVaeRL~ei~K~~g~d~vRiSG~EP-~---l~~EHvlevIeLl~~~--tF 121 (228)
T COG5014 48 TVGCNLLCAYCWNYFRNLRPKRAGDFLSPEEVAERLLEISKKRGCDLVRISGAEP-I---LGREHVLEVIELLVNN--TF 121 (228)
T ss_pred ccccceeeHHhhhhhhcCCccccccccCHHHHHHHHHHHHHhcCCcEEEeeCCCc-c---ccHHHHHHHHHhccCc--eE
Confidence 34899999999875432221 26677766554443 678999999998753 2 2368999988776321 12
Q ss_pred EEEe--ecCCCCCChHHHHHHHHcCccc-ccccccch-HHHHHHhcCC-CCCHHHHHHHHHHHHHhCCCCceEEEeEEEe
Q 017200 210 LIEA--LVPDFRGNNGCVREVAKSGLNV-FAHNIETV-EELQSAVRDH-RANFKQSLDVLMMAKDYVPAGTLTKTSIMLG 284 (375)
Q Consensus 210 ~Ie~--l~pd~~g~~e~l~~L~~aGldv-~~hnlEtv-~rl~~~mr~r-~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvG 284 (375)
.++. +.-.| |...+++|.+- +++ +-..+-.. ++-|.+|..- ..-+..-|+.|+.+++ .|+.+-.-+|.|
T Consensus 122 vlETNG~~~g~--drslv~el~nr-~nv~vRVsvKG~dpesF~kIT~asp~~F~~QL~aLr~L~~---~g~rf~pA~~~~ 195 (228)
T COG5014 122 VLETNGLMFGF--DRSLVDELVNR-LNVLVRVSVKGWDPESFEKITGASPEYFRYQLKALRHLHG---KGHRFWPAVVYD 195 (228)
T ss_pred EEEeCCeEEec--CHHHHHHHhcC-CceEEEEEecCCCHHHHHHHhcCChHHHHHHHHHHHHHHh---cCceeeehhhhc
Confidence 2221 11122 66677777652 221 22223333 3667777621 1115556888888887 688899999999
Q ss_pred c-CCCHHHHHHHHHHHHHcC
Q 017200 285 C-GETPDQVVSTMEKVRAAG 303 (375)
Q Consensus 285 l-GET~ee~~etl~~Lrelg 303 (375)
| -|.-+ .+..+.|-+.+
T Consensus 196 f~~Ed~~--k~Lak~Lgehp 213 (228)
T COG5014 196 FFREDGL--KELAKRLGEHP 213 (228)
T ss_pred cchhhhH--HHHHHHhccCC
Confidence 9 43322 23444554444
|
|
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.012 Score=56.87 Aligned_cols=142 Identities=15% Similarity=0.199 Sum_probs=103.2
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcC---
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSG--- 232 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aG--- 232 (375)
.++.++.+..++++.+.|+++|-+++... . ... .+.++.+.+..|+..+.++.. ++.+.++...++|
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~---~---~~~-~~~~~~l~~~~~~~~~~~l~r---~~~~~v~~a~~~~~~~ 85 (268)
T cd07940 16 SLTPEEKLEIARQLDELGVDVIEAGFPAA---S---PGD-FEAVKRIAREVLNAEICGLAR---AVKKDIDAAAEALKPA 85 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCC---C---HHH-HHHHHHHHHhCCCCEEEEEcc---CCHhhHHHHHHhCCCC
Confidence 47899999999999999999999875431 0 112 267788877678888887762 2456788888888
Q ss_pred -cccccccccchH-HHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 017200 233 -LNVFAHNIETVE-ELQSAVRD-HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 233 -ldv~~hnlEtv~-rl~~~mr~-r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i 309 (375)
++.+....-+++ .+...++. +....+...+.++.+++ .|+.+.-+.+.+..=+++.+.+.++.+.++|++.|.+
T Consensus 86 ~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~---~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l 162 (268)
T cd07940 86 KVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKS---HGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTINI 162 (268)
T ss_pred CCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH---cCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 888777666666 55555551 11234555677788888 5777776666665567888899999999999999877
Q ss_pred e
Q 017200 310 G 310 (375)
Q Consensus 310 ~ 310 (375)
.
T Consensus 163 ~ 163 (268)
T cd07940 163 P 163 (268)
T ss_pred C
Confidence 3
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.027 Score=54.46 Aligned_cols=138 Identities=15% Similarity=0.183 Sum_probs=100.2
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
.++.++.++.++.+.+.|+++|-+.+. ... ....+.++.+.+......+-.+ ...+.+.++...++|++.
T Consensus 18 ~~s~~~k~~i~~~L~~~Gv~~IEvG~P---~~~----~~~~~~~~~l~~~~~~~~v~~~---~r~~~~di~~a~~~g~~~ 87 (262)
T cd07948 18 FFDTEDKIEIAKALDAFGVDYIELTSP---AAS----PQSRADCEAIAKLGLKAKILTH---IRCHMDDARIAVETGVDG 87 (262)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEECC---CCC----HHHHHHHHHHHhCCCCCcEEEE---ecCCHHHHHHHHHcCcCE
Confidence 489999999999999999999998862 221 2245556666543322333222 123678899999999999
Q ss_pred ccccccchHH-HHHHhcCCCCCHHH----HHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 017200 236 FAHNIETVEE-LQSAVRDHRANFKQ----SLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 236 ~~hnlEtv~r-l~~~mr~r~~s~~~----~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i 309 (375)
+...+-+++. +...++ .+.++ ..+.++.+++ .|+.+..+++-.++=+++++.+.++.+.++|++.+.+
T Consensus 88 i~i~~~~S~~~~~~~~~---~~~~e~~~~~~~~i~~a~~---~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l 160 (262)
T cd07948 88 VDLVFGTSPFLREASHG---KSITEIIESAVEVIEFVKS---KGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGI 160 (262)
T ss_pred EEEEEecCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---CCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 8877777773 333333 34555 4555577777 5799999999999878899999999999999998877
|
Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th |
| >TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0056 Score=63.06 Aligned_cols=78 Identities=8% Similarity=0.080 Sum_probs=61.7
Q ss_pred ChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCH-HHHHHHHHH
Q 017200 221 NNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETP-DQVVSTMEK 298 (375)
Q Consensus 221 ~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~-ee~~etl~~ 298 (375)
+++.++++.+.+++-++..+.+. ++++.+|- +.....+.++.++.+.+ .|+.+.+.+++==|=++ +++.+|+.+
T Consensus 127 ~~~d~~RI~~~~lspl~iSVhat~p~lR~~ll-~n~~a~~il~~l~~l~~---~~I~~h~qiVlcPGiNDg~~L~~Ti~d 202 (433)
T TIGR03279 127 PPAEWQRIEQLRLSPLYVSVHATEPSLRARLL-KNPRAGLILEQLKWFQE---RRLQLHAQVVVCPGINDGKHLERTLRD 202 (433)
T ss_pred CHHHHHHHHHcCCCCEEEEEecCCHHHHHHHh-CCCCHHHHHHHHHHHHH---cCCeEEEEEEEcCCcCCHHHHHHHHHH
Confidence 46677888888887777777754 58888876 45578999999999988 67888888877446666 788899999
Q ss_pred HHHc
Q 017200 299 VRAA 302 (375)
Q Consensus 299 Lrel 302 (375)
|.++
T Consensus 203 L~~~ 206 (433)
T TIGR03279 203 LAQF 206 (433)
T ss_pred HHhh
Confidence 9988
|
Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis. |
| >TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0086 Score=60.50 Aligned_cols=142 Identities=13% Similarity=0.199 Sum_probs=104.9
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
.++.++.++.++.+.+.|+++|-+..-.. ++ .-.+.++.|.+..+...|..+.. .+.+.++...++|++.
T Consensus 18 ~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~---~~----~~~e~i~~i~~~~~~~~v~~~~r---~~~~di~~a~~~g~~~ 87 (363)
T TIGR02090 18 SLTVEQKVEIARKLDELGVDVIEAGFPIA---SE----GEFEAIKKISQEGLNAEICSLAR---ALKKDIDKAIDCGVDS 87 (363)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCC---Ch----HHHHHHHHHHhcCCCcEEEEEcc---cCHHHHHHHHHcCcCE
Confidence 48999999999999999999998764322 11 12466777776666666666553 2678899999999999
Q ss_pred ccccccchH-HHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 236 FAHNIETVE-ELQSAVRD-HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 236 ~~hnlEtv~-rl~~~mr~-r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
+...+-+++ .+...++. +....+...+.++.|++ .|+.+..+++-..--+++.+.+.++.+.+.|++.|.+.
T Consensus 88 i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~---~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~ 161 (363)
T TIGR02090 88 IHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKE---HGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINIA 161 (363)
T ss_pred EEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH---cCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 887777777 44445541 11234556678888888 57888877776666678999999999999999998774
|
Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. |
| >TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0033 Score=55.82 Aligned_cols=69 Identities=14% Similarity=0.178 Sum_probs=50.3
Q ss_pred CccCCCCcCCCCCCCC---CCCCCCcchHHHHHHHHHhcC-CcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC
Q 017200 137 DTCTRGCRFCNVKTSR---APPPPDPDEPTNVAEAIASWG-LDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (375)
Q Consensus 137 d~C~~~C~FC~v~~~r---~~~~ld~eEi~~~a~al~~~G-~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p 207 (375)
.+|+.+|.||.-+... ....++.+++.+.++.+.+.+ +..|.||||+--..++ .+.+.++++.+++..+
T Consensus 23 ~gCnl~C~~C~n~~~~~~~~g~~~~~~~~~~i~~~l~~~~~~~gVt~sGGEPllq~~--~~~l~~ll~~~k~~~~ 95 (154)
T TIGR02491 23 AGCKHHCEGCFNKETWNFNGGKEFTEALEKEIIRDLNDNPLIDGLTLSGGDPLYPRN--VEELIELVKKIKAEFP 95 (154)
T ss_pred CCCCCCCcCCCcccccCCCCCCcCCHHHHHHHHHHHHhcCCcCeEEEeChhhCCCCC--HHHHHHHHHHHHHhCC
Confidence 6899999999977532 123588777777777777775 6889999997432222 4678899999987644
|
This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer. |
| >PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0028 Score=56.41 Aligned_cols=79 Identities=15% Similarity=0.183 Sum_probs=52.8
Q ss_pred CccCCCCcCCCCCCC-C--CCCCCCcchHHHHHHHHHhcCC--cEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEE
Q 017200 137 DTCTRGCRFCNVKTS-R--APPPPDPDEPTNVAEAIASWGL--DYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLI 211 (375)
Q Consensus 137 d~C~~~C~FC~v~~~-r--~~~~ld~eEi~~~a~al~~~G~--~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~I 211 (375)
.+|+.+|.||.-+.. . .....+.+.+.+..+.+...+. ..|+||||+.- +. .....+.++++.+++..|+..|
T Consensus 24 ~GCnl~C~~C~n~~~~~~~~g~~~~~~~~~~il~~~~~~~~~~~gvt~sGGEPl-~~-~~~~~l~~l~~~~k~~~~~~~i 101 (154)
T PRK11121 24 SGCVHQCPGCYNKSTWRLNSGHPFTKEMEDQIIADLNDTRIKRQGLSLSGGDPL-HP-QNVPDILKLVQRVKAECPGKDI 101 (154)
T ss_pred CCCCCcCcCCCChhhccCCCCcccCHHHHHHHHHHHHHhCCCCCcEEEECCCcc-ch-hhHHHHHHHHHHHHHHCCCCCE
Confidence 899999999976642 1 1112454445555566666655 78999999742 22 1256788999999988877666
Q ss_pred EeecCC
Q 017200 212 EALVPD 217 (375)
Q Consensus 212 e~l~pd 217 (375)
-+.++-
T Consensus 102 ~~~tGy 107 (154)
T PRK11121 102 WVWTGY 107 (154)
T ss_pred EEecCC
Confidence 555553
|
|
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.032 Score=53.65 Aligned_cols=138 Identities=13% Similarity=0.109 Sum_probs=98.4
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeC-----CCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDR-----DDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK 230 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr-----~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~ 230 (375)
.++.++.+..++.+.+.|+++|-+..... .+....+.. =.+.++.+++..++..+.++...-.++.+.++...+
T Consensus 18 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~-~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 96 (263)
T cd07943 18 QFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHT-DEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAAD 96 (263)
T ss_pred ecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCC-hHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHH
Confidence 48899999999999999999999883211 000000111 135667776666777776654222235677899999
Q ss_pred cCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 017200 231 SGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 231 aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i 309 (375)
+|+|.+.......+ .+...+.++.+|+ .|+.+..+++-...-+++.+.+.++.+.+.|++.|.+
T Consensus 97 ~g~~~iri~~~~s~------------~~~~~~~i~~ak~---~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l 160 (263)
T cd07943 97 LGVDVVRVATHCTE------------ADVSEQHIGAARK---LGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYV 160 (263)
T ss_pred cCCCEEEEEechhh------------HHHHHHHHHHHHH---CCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 99998765432222 2356778899998 5788888887777778999999999999999999877
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.032 Score=55.92 Aligned_cols=138 Identities=15% Similarity=0.195 Sum_probs=100.6
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCC---CCCccc--HHHHHHHHHHHHHhCCCcEEEe-ecCCCCCChHHHHHHH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRD---DLADQG--SGHFAQTVRKLKELKPNMLIEA-LVPDFRGNNGCVREVA 229 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~---dl~d~G--~~~~~~lir~Ik~~~p~i~Ie~-l~pd~~g~~e~l~~L~ 229 (375)
.++.++....++++.+.|+++|-++-++.- .+ +.| ...=.+.++.+++..++..+.+ +.|.+ ++.+.++...
T Consensus 21 ~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~-~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~-~~~~dl~~a~ 98 (337)
T PRK08195 21 QYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSF-NYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGI-GTVDDLKMAY 98 (337)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccc-cCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCc-ccHHHHHHHH
Confidence 488999999999999999999999844320 00 001 0001456677766667777776 44543 3677899999
Q ss_pred HcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 017200 230 KSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 230 ~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i 309 (375)
+.|+|.+....- ....+...+.++.+|+ .|+.+...+|....-+++++++.++.+.+.|++.|.+
T Consensus 99 ~~gvd~iri~~~------------~~e~~~~~~~i~~ak~---~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i 163 (337)
T PRK08195 99 DAGVRVVRVATH------------CTEADVSEQHIGLARE---LGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYV 163 (337)
T ss_pred HcCCCEEEEEEe------------cchHHHHHHHHHHHHH---CCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEe
Confidence 999998654321 1223566888999999 5788888898888889999999999999999999877
Q ss_pred e
Q 017200 310 G 310 (375)
Q Consensus 310 ~ 310 (375)
.
T Consensus 164 ~ 164 (337)
T PRK08195 164 V 164 (337)
T ss_pred C
Confidence 3
|
|
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.029 Score=54.26 Aligned_cols=140 Identities=19% Similarity=0.219 Sum_probs=99.1
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHH--HHHHHHHHHhC-CCcEEEeecCCCCCChHHHHHHHHcC
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHF--AQTVRKLKELK-PNMLIEALVPDFRGNNGCVREVAKSG 232 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~--~~lir~Ik~~~-p~i~Ie~l~pd~~g~~e~l~~L~~aG 232 (375)
.++.++..+.++.+.+.|+++|=+.-.....-...|...| .+.++.|.+.. ++..+.++.-....+.+.++...+.|
T Consensus 16 ~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g 95 (266)
T cd07944 16 DFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASGSV 95 (266)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHhcCC
Confidence 3899999999999999999999877322111000011001 23455554433 45777665533323567788888889
Q ss_pred cccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 233 LNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 233 ldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
++.+.... +....++.++.++.+|+ .|+.+..+++-.++=+++.+.+.++.+.+.|++.+.+.
T Consensus 96 v~~iri~~------------~~~~~~~~~~~i~~ak~---~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~ 158 (266)
T cd07944 96 VDMIRVAF------------HKHEFDEALPLIKAIKE---KGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIV 158 (266)
T ss_pred cCEEEEec------------ccccHHHHHHHHHHHHH---CCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 88765432 23468888999999998 57889999999999899999999999999999998773
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >TIGR02660 nifV_homocitr homocitrate synthase NifV | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.027 Score=56.87 Aligned_cols=138 Identities=18% Similarity=0.263 Sum_probs=100.7
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
.++.++.++.++.+.+.|+++|-+.. +...+ .-.+.++.|.+..+...+.++. +.+.+.++...++|++.
T Consensus 19 ~~s~~~k~~ia~~L~~~Gv~~IEvG~---p~~~~----~~~e~i~~i~~~~~~~~i~~~~---r~~~~di~~a~~~g~~~ 88 (365)
T TIGR02660 19 AFTAAEKLAIARALDEAGVDELEVGI---PAMGE----EERAVIRAIVALGLPARLMAWC---RARDADIEAAARCGVDA 88 (365)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC---CCCCH----HHHHHHHHHHHcCCCcEEEEEc---CCCHHHHHHHHcCCcCE
Confidence 48999999999999999999998752 22211 1245677777665666665554 22678899999999999
Q ss_pred ccccccchH-HHHHHhcCCCCCHHHHH----HHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 017200 236 FAHNIETVE-ELQSAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 236 ~~hnlEtv~-rl~~~mr~r~~s~~~~l----~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i 309 (375)
+...+-+++ .+..+++ .+.++.+ +.++.+++ .|+.+.-+.+-+.--+.+.+.+.++.+.+.|++.|.+
T Consensus 89 i~i~~~~Sd~~~~~~~~---~s~~e~l~~~~~~i~~ak~---~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l 161 (365)
T TIGR02660 89 VHISIPVSDLQIEAKLR---KDRAWVLERLARLVSFARD---RGLFVSVGGEDASRADPDFLVELAEVAAEAGADRFRF 161 (365)
T ss_pred EEEEEccCHHHHHHHhC---cCHHHHHHHHHHHHHHHHh---CCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEE
Confidence 888777777 4445554 3455555 67777887 5777776666655556788889999999999999877
|
This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase. |
| >PRK11858 aksA trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.032 Score=56.71 Aligned_cols=139 Identities=17% Similarity=0.202 Sum_probs=101.4
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
.++.++.++.++.+.+.|+++|-+.. +...+ .-.+.++.|.+......+-++.. ...+.++...++|++.
T Consensus 22 ~~s~e~k~~ia~~L~~~GV~~IE~G~---p~~~~----~~~e~i~~i~~~~~~~~i~~~~r---~~~~di~~a~~~g~~~ 91 (378)
T PRK11858 22 VFTNEEKLAIARMLDEIGVDQIEAGF---PAVSE----DEKEAIKAIAKLGLNASILALNR---AVKSDIDASIDCGVDA 91 (378)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEeC---CCcCh----HHHHHHHHHHhcCCCeEEEEEcc---cCHHHHHHHHhCCcCE
Confidence 48999999999999999999998642 22222 12456777766444444444432 1467789999999999
Q ss_pred ccccccchH-HHHHHhcCCCCCHHHHHH----HHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 236 FAHNIETVE-ELQSAVRDHRANFKQSLD----VLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 236 ~~hnlEtv~-rl~~~mr~r~~s~~~~l~----vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
+...+.+++ .+...++ .+.++.++ .++.|++ .|+.+..+.+-+.--+.+.+.+.++.+.+.|++.|.+.
T Consensus 92 i~i~~~~Sd~h~~~~~~---~s~~~~l~~~~~~v~~a~~---~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~ 165 (378)
T PRK11858 92 VHIFIATSDIHIKHKLK---KTREEVLERMVEAVEYAKD---HGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRFC 165 (378)
T ss_pred EEEEEcCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---CCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 888887777 4555554 35666665 7777777 57777777777777788999999999999999998773
|
|
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.041 Score=55.07 Aligned_cols=136 Identities=14% Similarity=0.187 Sum_probs=99.4
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeC-----CC--CCcccHHHHHHHHHHHHHhCCCcEEEe-ecCCCCCChHHHHH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDR-----DD--LADQGSGHFAQTVRKLKELKPNMLIEA-LVPDFRGNNGCVRE 227 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr-----~d--l~d~G~~~~~~lir~Ik~~~p~i~Ie~-l~pd~~g~~e~l~~ 227 (375)
.++.++....++++.+.|+++|-++-++. -+ .+- ... .+.++++.+..++..+.+ +.|.. ++.+.++.
T Consensus 20 ~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~--~~~-~e~i~~~~~~~~~~~~~~ll~pg~-~~~~dl~~ 95 (333)
T TIGR03217 20 QFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSA--HTD-LEYIEAAADVVKRAKVAVLLLPGI-GTVHDLKA 95 (333)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCC--CCh-HHHHHHHHHhCCCCEEEEEeccCc-cCHHHHHH
Confidence 48899999999999999999999984321 00 110 111 245556655556677764 44543 46788999
Q ss_pred HHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEE
Q 017200 228 VAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVM 307 (375)
Q Consensus 228 L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v 307 (375)
..++|+|.+..... ....+...+.++.+|+ .|+.+...+|--+.-+++++.+.++.+.+.|++.|
T Consensus 96 a~~~gvd~iri~~~------------~~e~d~~~~~i~~ak~---~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i 160 (333)
T TIGR03217 96 AYDAGARTVRVATH------------CTEADVSEQHIGMARE---LGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCV 160 (333)
T ss_pred HHHCCCCEEEEEec------------cchHHHHHHHHHHHHH---cCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEE
Confidence 99999998764321 1223556788899998 57888888988888899999999999999999998
Q ss_pred eee
Q 017200 308 TFG 310 (375)
Q Consensus 308 ~i~ 310 (375)
.+.
T Consensus 161 ~i~ 163 (333)
T TIGR03217 161 YIV 163 (333)
T ss_pred EEc
Confidence 773
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >PRK09389 (R)-citramalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.083 Score=55.59 Aligned_cols=138 Identities=15% Similarity=0.194 Sum_probs=97.4
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
+++.++.++.++.+.+.|+++|-+..--.. . .. .+.++.|.+......|..+..- ..+.++...++|++.
T Consensus 20 ~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~~---~---~d-~e~v~~i~~~~~~~~i~a~~r~---~~~di~~a~~~g~~~ 89 (488)
T PRK09389 20 SLTPEEKLEIARKLDELGVDVIEAGSAITS---E---GE-REAIKAVTDEGLNAEICSFARA---VKVDIDAALECDVDS 89 (488)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEeCCcCC---H---HH-HHHHHHHHhcCCCcEEEeeccc---CHHHHHHHHhCCcCE
Confidence 589999999999999999999988643211 1 11 3456667655555666666543 356688899999998
Q ss_pred ccccccchHH-HHHHhcCCCCCHHHHH----HHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 017200 236 FAHNIETVEE-LQSAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 236 ~~hnlEtv~r-l~~~mr~r~~s~~~~l----~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i 309 (375)
+...+-+++. +...++ .+.++.+ +.++.+++ .|+.+.-+++-+.--+.+.+.+.++.+.+.|++.|.+
T Consensus 90 v~i~~~~Sd~h~~~~l~---~s~~e~l~~~~~~v~~ak~---~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l 162 (488)
T PRK09389 90 VHLVVPTSDLHIEYKLK---KTREEVLETAVEAVEYAKD---HGLIVELSGEDASRADLDFLKELYKAGIEAGADRICF 162 (488)
T ss_pred EEEEEccCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---CCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 8887777773 333333 3555554 45566666 4777777777665555666779999999999999877
|
|
| >PF00682 HMGL-like: HMGL-like of this family is not conserved in other members | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.018 Score=54.06 Aligned_cols=143 Identities=17% Similarity=0.235 Sum_probs=91.5
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCC-CCCChHHHHHHHHcCcc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPD-FRGNNGCVREVAKSGLN 234 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd-~~g~~e~l~~L~~aGld 234 (375)
.++.++..+.++.+.+.|+++|-+... ... .. -.+.++.+.+..+...+..+..- .......++.++++|+|
T Consensus 10 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~---~~~---~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~ 82 (237)
T PF00682_consen 10 AFSTEEKLEIAKALDEAGVDYIEVGFP---FAS---ED-DFEQVRRLREALPNARLQALCRANEEDIERAVEAAKEAGID 82 (237)
T ss_dssp T--HHHHHHHHHHHHHHTTSEEEEEHC---TSS---HH-HHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHHHTTSS
T ss_pred CcCHHHHHHHHHHHHHhCCCEEEEccc---ccC---HH-HHHHhhhhhhhhcccccceeeeehHHHHHHHHHhhHhccCC
Confidence 378899999999999999999987711 111 11 13344455444444555544331 10012235556779999
Q ss_pred cccccccchHHHHHHhcCCCCCHHHH----HHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 235 VFAHNIETVEELQSAVRDHRANFKQS----LDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 235 v~~hnlEtv~rl~~~mr~r~~s~~~~----l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
.+...+..++...+... +.+.++. .+.++.+++ .|+.+.-+++-...-+++++.+..+.+.++|++.|.|.
T Consensus 83 ~i~i~~~~s~~~~~~~~--~~~~~~~~~~~~~~v~~ak~---~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~ 157 (237)
T PF00682_consen 83 IIRIFISVSDLHIRKNL--NKSREEALERIEEAVKYAKE---LGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLA 157 (237)
T ss_dssp EEEEEEETSHHHHHHHT--CSHHHHHHHHHHHHHHHHHH---TTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEE
T ss_pred EEEecCcccHHHHHHhh--cCCHHHHHHHHHHHHHHHHh---cCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEee
Confidence 98887777773333322 3454444 455677777 47777777666667789999999999999999999884
|
are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A .... |
| >cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.19 Score=49.15 Aligned_cols=137 Identities=15% Similarity=0.240 Sum_probs=94.4
Q ss_pred CCCcchHHHHHHHH-HhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC------CCcEEEeecCCCCCChHHHHHH
Q 017200 156 PPDPDEPTNVAEAI-ASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK------PNMLIEALVPDFRGNNGCVREV 228 (375)
Q Consensus 156 ~ld~eEi~~~a~al-~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~------p~i~Ie~l~pd~~g~~e~l~~L 228 (375)
.++.++-++.++++ .+.|+++|-+++-- .. .+.+ +.++++.... +++.+-++.+ +...++..
T Consensus 15 ~~s~e~K~~i~~~L~~~~Gv~~IEvg~~~---~s---~~e~-~av~~~~~~~~~~~~~~~~~~~a~~~----~~~~~~~A 83 (280)
T cd07945 15 SFSPSEKLNIAKILLQELKVDRIEVASAR---VS---EGEF-EAVQKIIDWAAEEGLLDRIEVLGFVD----GDKSVDWI 83 (280)
T ss_pred ccCHHHHHHHHHHHHHHhCCCEEEecCCC---CC---HHHH-HHHHHHHHHhhhhccccCcEEEEecC----cHHHHHHH
Confidence 48999999999996 67799999887631 11 1112 4455443311 2355555554 34578899
Q ss_pred HHcCcccccccccchH-HHHHHhcCCCCCHHHH----HHHHHHHHHhCCCCceEEEeEEEecC----CCHHHHHHHHHHH
Q 017200 229 AKSGLNVFAHNIETVE-ELQSAVRDHRANFKQS----LDVLMMAKDYVPAGTLTKTSIMLGCG----ETPDQVVSTMEKV 299 (375)
Q Consensus 229 ~~aGldv~~hnlEtv~-rl~~~mr~r~~s~~~~----l~vl~~ak~~~p~Gl~tkt~imvGlG----ET~ee~~etl~~L 299 (375)
+++|++.+...+-+++ .+...++ .+.++. .++++.+++ .|+.+..+++- +| -+.+.+.+.++.+
T Consensus 84 ~~~g~~~i~i~~~~S~~h~~~~~~---~t~~e~l~~~~~~i~~a~~---~G~~v~~~~~d-~~~~~r~~~~~~~~~~~~~ 156 (280)
T cd07945 84 KSAGAKVLNLLTKGSLKHCTEQLR---KTPEEHFADIREVIEYAIK---NGIEVNIYLED-WSNGMRDSPDYVFQLVDFL 156 (280)
T ss_pred HHCCCCEEEEEEeCCHHHHHHHHC---cCHHHHHHHHHHHHHHHHh---CCCEEEEEEEe-CCCCCcCCHHHHHHHHHHH
Confidence 9999999888877777 5555554 244544 556677777 47888877775 55 3688888999999
Q ss_pred HHcCCcEEeee
Q 017200 300 RAAGVDVMTFG 310 (375)
Q Consensus 300 relgvd~v~i~ 310 (375)
.+.|++.|.+.
T Consensus 157 ~~~G~~~i~l~ 167 (280)
T cd07945 157 SDLPIKRIMLP 167 (280)
T ss_pred HHcCCCEEEec
Confidence 99999998873
|
Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con |
| >PRK00915 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.58 Score=49.60 Aligned_cols=138 Identities=12% Similarity=0.129 Sum_probs=94.5
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHH----HHHHc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVR----EVAKS 231 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~----~L~~a 231 (375)
.++.++-++.++.+.+.|+++|-+...- .. ... .+.++.|.+..++..|.++..- ..+.++ .++++
T Consensus 22 ~~s~e~K~~ia~~L~~~Gv~~IE~G~p~---~s---~~d-~~~v~~i~~~~~~~~i~a~~r~---~~~did~a~~a~~~~ 91 (513)
T PRK00915 22 SLTVEEKLQIAKQLERLGVDVIEAGFPA---SS---PGD-FEAVKRIARTVKNSTVCGLARA---VKKDIDAAAEALKPA 91 (513)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCC---CC---hHH-HHHHHHHHhhCCCCEEEEEccC---CHHHHHHHHHHhhcC
Confidence 4899999999999999999999875421 11 111 2345777666667788777632 233344 44478
Q ss_pred CcccccccccchH-HHHHHhcCCCCCHHHHH----HHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcE
Q 017200 232 GLNVFAHNIETVE-ELQSAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDV 306 (375)
Q Consensus 232 Gldv~~hnlEtv~-rl~~~mr~r~~s~~~~l----~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~ 306 (375)
|.+.+...+-+++ .+...++ .+.++.+ +.++.+++ .|+.+.-+.+-+.--+.+.+.+.++.+.+.|++.
T Consensus 92 ~~~~v~i~~~~Sd~h~~~~l~---~s~~e~l~~~~~~v~~ak~---~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~ 165 (513)
T PRK00915 92 EAPRIHTFIATSPIHMEYKLK---MSREEVLEMAVEAVKYARS---YTDDVEFSAEDATRTDLDFLCRVVEAAIDAGATT 165 (513)
T ss_pred CCCEEEEEECCcHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---CCCeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 8888887777777 5555554 3566655 66677777 4676655555444445677889999999999999
Q ss_pred Eee
Q 017200 307 MTF 309 (375)
Q Consensus 307 v~i 309 (375)
|.+
T Consensus 166 i~l 168 (513)
T PRK00915 166 INI 168 (513)
T ss_pred EEE
Confidence 877
|
|
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.25 Score=48.04 Aligned_cols=139 Identities=17% Similarity=0.186 Sum_probs=93.7
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCC--CCcccHHHHHHHHHHHHHhCCCcEEEeecC-----CCC-----CChH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD--LADQGSGHFAQTVRKLKELKPNMLIEALVP-----DFR-----GNNG 223 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~d--l~d~G~~~~~~lir~Ik~~~p~i~Ie~l~p-----d~~-----g~~e 223 (375)
.++.+|.++.+..+.+.|++.|-+.++-..+ +...+.+. .+.++.+.+..|+..+.++.- .+. ...+
T Consensus 17 ~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~-~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~ 95 (275)
T cd07937 17 RMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDP-WERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVEL 95 (275)
T ss_pred eccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCH-HHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHH
Confidence 3788999999999999999999888643211 00001111 456677776666666655432 110 1466
Q ss_pred HHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec--CCCHHHHHHHHHHHHH
Q 017200 224 CVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC--GETPDQVVSTMEKVRA 301 (375)
Q Consensus 224 ~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl--GET~ee~~etl~~Lre 301 (375)
.++...++|+|++..... ..+.+...+.++.+|+ .|+.+...++.-. .-+++.+.+.++.+.+
T Consensus 96 di~~~~~~g~~~iri~~~------------~~~~~~~~~~i~~ak~---~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~ 160 (275)
T cd07937 96 FVEKAAKNGIDIFRIFDA------------LNDVRNLEVAIKAVKK---AGKHVEGAICYTGSPVHTLEYYVKLAKELED 160 (275)
T ss_pred HHHHHHHcCCCEEEEeec------------CChHHHHHHHHHHHHH---CCCeEEEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 678888889887654322 2235777888899998 5777766665533 4567888899999999
Q ss_pred cCCcEEeee
Q 017200 302 AGVDVMTFG 310 (375)
Q Consensus 302 lgvd~v~i~ 310 (375)
.|++.|.+.
T Consensus 161 ~Ga~~i~l~ 169 (275)
T cd07937 161 MGADSICIK 169 (275)
T ss_pred cCCCEEEEc
Confidence 999998874
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.45 Score=51.34 Aligned_cols=138 Identities=18% Similarity=0.209 Sum_probs=92.5
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCC--CcccHHHHHHHHHHHHHhCCCcEEEee--cCCCCC--------ChH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDL--ADQGSGHFAQTVRKLKELKPNMLIEAL--VPDFRG--------NNG 223 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl--~d~G~~~~~~lir~Ik~~~p~i~Ie~l--~pd~~g--------~~e 223 (375)
.++.++.+..|.++.+.|+..|-+.||..-|. .-. .+.-.+.++.+++..|++.+.++ .++..| ..+
T Consensus 22 r~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl-~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~ 100 (592)
T PRK09282 22 RMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYL-NEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEK 100 (592)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccC-CccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHH
Confidence 37889999999999999999999988754221 000 01134667888888888888877 333333 245
Q ss_pred HHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC--CCHHHHHHHHHHHHH
Q 017200 224 CVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG--ETPDQVVSTMEKVRA 301 (375)
Q Consensus 224 ~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlG--ET~ee~~etl~~Lre 301 (375)
.++...++|+|++.......+ .+.....++.+++ .|..+...|-+-++ -|.+.+++.++.+.+
T Consensus 101 ~v~~A~~~Gvd~irif~~lnd------------~~n~~~~i~~ak~---~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~ 165 (592)
T PRK09282 101 FVEKAAENGIDIFRIFDALND------------VRNMEVAIKAAKK---AGAHVQGTISYTTSPVHTIEKYVELAKELEE 165 (592)
T ss_pred HHHHHHHCCCCEEEEEEecCh------------HHHHHHHHHHHHH---cCCEEEEEEEeccCCCCCHHHHHHHHHHHHH
Confidence 678888999998766433322 1233455677777 46666655533332 367888888888888
Q ss_pred cCCcEEee
Q 017200 302 AGVDVMTF 309 (375)
Q Consensus 302 lgvd~v~i 309 (375)
.|++.|.|
T Consensus 166 ~Gad~I~i 173 (592)
T PRK09282 166 MGCDSICI 173 (592)
T ss_pred cCCCEEEE
Confidence 88888777
|
|
| >cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.77 Score=44.50 Aligned_cols=145 Identities=14% Similarity=0.188 Sum_probs=91.7
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC-CCcEEEeec----CCCC-CChHHHHHHH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK-PNMLIEALV----PDFR-GNNGCVREVA 229 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~-p~i~Ie~l~----pd~~-g~~e~l~~L~ 229 (375)
.++.++..+.++++.+.|+++|-+.+.-.. ++ -.+.++.+.+.. ++..+-.+. +++. .+...++...
T Consensus 16 ~~s~e~k~~i~~~L~~~Gv~~IE~G~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~ 88 (273)
T cd07941 16 SFSVEDKLRIARKLDELGVDYIEGGWPGSN--PK-----DTEFFARAKKLKLKHAKLAAFGSTRRAGVKAEEDPNLQALL 88 (273)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecCCcCC--HH-----HHHHHHHHHHcCCCCcEEEEEecccccCCCccchHHHHHHH
Confidence 488999999999999999999998653211 11 133455555443 234333321 2221 1345688899
Q ss_pred HcCcccccccccchH-HHHHHhc-CCCCCHHHHHHHHHHHHHhCCCCceEEEeEE---EecCCCHHHHHHHHHHHHHcCC
Q 017200 230 KSGLNVFAHNIETVE-ELQSAVR-DHRANFKQSLDVLMMAKDYVPAGTLTKTSIM---LGCGETPDQVVSTMEKVRAAGV 304 (375)
Q Consensus 230 ~aGldv~~hnlEtv~-rl~~~mr-~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~im---vGlGET~ee~~etl~~Lrelgv 304 (375)
++|++.+...+-+++ .+...++ ++....+...+.++.+++ .|+.+..+.| -|.--+.+.+.+.++.+.+.|+
T Consensus 89 ~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~---~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~ 165 (273)
T cd07941 89 EAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKS---HGREVIFDAEHFFDGYKANPEYALATLKAAAEAGA 165 (273)
T ss_pred hCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHH---cCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCCC
Confidence 999998876665666 3344443 112334455567777777 4776666544 2333457777899999999999
Q ss_pred cEEeee
Q 017200 305 DVMTFG 310 (375)
Q Consensus 305 d~v~i~ 310 (375)
+.|.+.
T Consensus 166 ~~i~l~ 171 (273)
T cd07941 166 DWLVLC 171 (273)
T ss_pred CEEEEe
Confidence 988773
|
Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in |
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.63 Score=48.54 Aligned_cols=138 Identities=14% Similarity=0.167 Sum_probs=90.1
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCC--CcccHHHHHHHHHHHHHhCCCcEEEeec--CCCCC--------ChH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDL--ADQGSGHFAQTVRKLKELKPNMLIEALV--PDFRG--------NNG 223 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl--~d~G~~~~~~lir~Ik~~~p~i~Ie~l~--pd~~g--------~~e 223 (375)
.++.++.+..|+++.+.|+..|-++||..-|- .-.+.+ =.+.++.|++..|++.+..+. +++.| ..+
T Consensus 22 ~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~-p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~ 100 (448)
T PRK12331 22 RMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNED-PWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVES 100 (448)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCC-HHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHH
Confidence 47889999999999999999999998854321 000001 246778888777888776433 22222 245
Q ss_pred HHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCC--CHHHHHHHHHHHHH
Q 017200 224 CVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGE--TPDQVVSTMEKVRA 301 (375)
Q Consensus 224 ~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGE--T~ee~~etl~~Lre 301 (375)
.++...++|+|++....-..+ + +...+.++.+++ .|+.+...|-.-++. |.+-+++..+.+.+
T Consensus 101 ~v~~A~~~Gvd~irif~~lnd-~-----------~n~~~~v~~ak~---~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~ 165 (448)
T PRK12331 101 FVQKSVENGIDIIRIFDALND-V-----------RNLETAVKATKK---AGGHAQVAISYTTSPVHTIDYFVKLAKEMQE 165 (448)
T ss_pred HHHHHHHCCCCEEEEEEecCc-H-----------HHHHHHHHHHHH---cCCeEEEEEEeecCCCCCHHHHHHHHHHHHH
Confidence 678888999998776543332 1 123446777777 465554444333332 56777888888888
Q ss_pred cCCcEEee
Q 017200 302 AGVDVMTF 309 (375)
Q Consensus 302 lgvd~v~i 309 (375)
.|+|.|.|
T Consensus 166 ~Gad~I~i 173 (448)
T PRK12331 166 MGADSICI 173 (448)
T ss_pred cCCCEEEE
Confidence 88888777
|
|
| >PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.67 Score=43.83 Aligned_cols=126 Identities=19% Similarity=0.224 Sum_probs=93.6
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.+.+.+..++++....|.++|-|- -| .++|+.+++. .++.|++..- +++.+-.-.++|.|.+
T Consensus 24 Fd~~~V~~i~~AA~~ggAt~vDIA-------ad------p~LV~~~~~~-s~lPICVSaV----ep~~f~~aV~AGAdli 85 (242)
T PF04481_consen 24 FDAESVAAIVKAAEIGGATFVDIA-------AD------PELVKLAKSL-SNLPICVSAV----EPELFVAAVKAGADLI 85 (242)
T ss_pred cCHHHHHHHHHHHHccCCceEEec-------CC------HHHHHHHHHh-CCCCeEeecC----CHHHHHHHHHhCCCEE
Confidence 688899999999999999999443 12 4567777654 3566765432 5677777888999976
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEE
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVM 307 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v 307 (375)
..+ -.|..|++= |..+.++.|+.-++-|++.|+ +..+.+ +=+.=..++-++...+|.++|+|.|
T Consensus 86 EIG--NfDsFY~qG--r~f~a~eVL~Lt~~tR~LLP~-~~LsVT--VPHiL~ld~Qv~LA~~L~~~GaDiI 149 (242)
T PF04481_consen 86 EIG--NFDSFYAQG--RRFSAEEVLALTRETRSLLPD-ITLSVT--VPHILPLDQQVQLAEDLVKAGADII 149 (242)
T ss_pred Eec--chHHHHhcC--CeecHHHHHHHHHHHHHhCCC-CceEEe--cCccccHHHHHHHHHHHHHhCCcEE
Confidence 543 346778763 578999999999999999987 543333 3444477778899999999999987
|
As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis. |
| >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.74 Score=49.61 Aligned_cols=138 Identities=17% Similarity=0.197 Sum_probs=91.9
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCC--CcccHHHHHHHHHHHHHhCCCcEEEeec--CCCCC--------ChH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDL--ADQGSGHFAQTVRKLKELKPNMLIEALV--PDFRG--------NNG 223 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl--~d~G~~~~~~lir~Ik~~~p~i~Ie~l~--pd~~g--------~~e 223 (375)
.++.++.+..|+++.+.|+..|-++||..-|- +-.+.+ =.+.++.|++..|++.+..+. ++..| ..+
T Consensus 17 ~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~-~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~ 95 (582)
T TIGR01108 17 RMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNED-PWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVER 95 (582)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCC-HHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHH
Confidence 47889999999999999999999998754331 111111 256788888877888888773 33322 144
Q ss_pred HHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC--CCHHHHHHHHHHHHH
Q 017200 224 CVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG--ETPDQVVSTMEKVRA 301 (375)
Q Consensus 224 ~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlG--ET~ee~~etl~~Lre 301 (375)
.++...++|+|++....-..+ .+.....++.+++ .|+.+...|-.-+. -|.+.+++.++.+.+
T Consensus 96 ~v~~a~~~Gvd~irif~~lnd------------~~n~~~~i~~ak~---~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~ 160 (582)
T TIGR01108 96 FVKKAVENGMDVFRIFDALND------------PRNLQAAIQAAKK---HGAHAQGTISYTTSPVHTLETYLDLAEELLE 160 (582)
T ss_pred HHHHHHHCCCCEEEEEEecCc------------HHHHHHHHHHHHH---cCCEEEEEEEeccCCCCCHHHHHHHHHHHHH
Confidence 577888999998766433222 1234455677777 46655555433221 367888888888888
Q ss_pred cCCcEEee
Q 017200 302 AGVDVMTF 309 (375)
Q Consensus 302 lgvd~v~i 309 (375)
.|++.|.|
T Consensus 161 ~Gad~I~i 168 (582)
T TIGR01108 161 MGVDSICI 168 (582)
T ss_pred cCCCEEEE
Confidence 88888776
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane. |
| >COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.3 Score=50.33 Aligned_cols=141 Identities=18% Similarity=0.237 Sum_probs=97.2
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC---CcEEEeecCCCCCChHHHHHHHHcC
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP---NMLIEALVPDFRGNNGCVREVAKSG 232 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p---~i~Ie~l~pd~~g~~e~l~~L~~aG 232 (375)
+++.++-++.|+++.++|+++|-........ +-.+.++.|....+ ...+.++.++ ....++.+.++|
T Consensus 20 ~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~~s~-------~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~ea~~~a~ 89 (409)
T COG0119 20 SFSVEEKIRIAKALDDLGVDYIEAGFPVASP-------GDFEFVRAIAEKAGLFICALIAALARA---IKRDIEALLEAG 89 (409)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeCCcCCh-------hhHHHHHHHHHhcCcccchhhhhhHHh---HHhhHHHHHhCC
Confidence 5899999999999999999999877653221 12334445543222 2233333333 355799999999
Q ss_pred cccccccccchH-HHHHHhc-CCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 017200 233 LNVFAHNIETVE-ELQSAVR-DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 233 ldv~~hnlEtv~-rl~~~mr-~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i 309 (375)
.+.+...+.+++ -+...++ .+....+...+.++.|++ .|+.+.-+..-.+.-+.+.+++.++.+.+.|++.|.+
T Consensus 90 ~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~---~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~ga~~i~l 165 (409)
T COG0119 90 VDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARD---HGLEVRFSAEDATRTDPEFLAEVVKAAIEAGADRINL 165 (409)
T ss_pred CCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH---cCCeEEEEeeccccCCHHHHHHHHHHHHHcCCcEEEE
Confidence 999888888887 3333332 122333444556677777 5777777777777888888899999999999999988
|
|
| >TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type | Back alignment and domain information |
|---|
Probab=94.99 E-value=1.6 Score=46.15 Aligned_cols=138 Identities=14% Similarity=0.093 Sum_probs=92.5
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHH----Hc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVA----KS 231 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~----~a 231 (375)
+++.++-++.++.+.+.|+++|-+..--. . ... .+.++.|.+..+...+.++.+- ..+.++... ++
T Consensus 19 ~~s~e~K~~ia~~L~~~GV~~IEvG~p~~---s---~~d-~e~v~~i~~~~~~~~i~al~r~---~~~did~a~~al~~~ 88 (494)
T TIGR00973 19 SLTVEEKLQIALALERLGVDIIEAGFPVS---S---PGD-FEAVQRIARTVKNPRVCGLARC---VEKDIDAAAEALKPA 88 (494)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEECCCC---C---HHH-HHHHHHHHHhCCCCEEEEEcCC---CHHhHHHHHHhcccc
Confidence 48999999999999999999997653221 1 112 2445777665566777777653 334444444 44
Q ss_pred CcccccccccchH-HHHHHhcCCCCCHHHHH----HHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcE
Q 017200 232 GLNVFAHNIETVE-ELQSAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDV 306 (375)
Q Consensus 232 Gldv~~hnlEtv~-rl~~~mr~r~~s~~~~l----~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~ 306 (375)
+.+.+...+-+++ .+...++ .+.++.+ +.++.+++ .|+.+.-+.+-+.--+.+.+++.++.+.+.|++.
T Consensus 89 ~~~~v~i~~~~S~~h~~~~l~---~s~~e~l~~~~~~v~~a~~---~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~ 162 (494)
T TIGR00973 89 EKFRIHTFIATSPIHLEHKLK---MTRDEVLERAVGMVKYAKN---FTDDVEFSCEDAGRTEIPFLARIVEAAINAGATT 162 (494)
T ss_pred CCCEEEEEEccCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---cCCeEEEEcCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 6666776666777 4444444 4556655 46677777 4566655555555556778889999999999999
Q ss_pred Eee
Q 017200 307 MTF 309 (375)
Q Consensus 307 v~i 309 (375)
|.+
T Consensus 163 i~l 165 (494)
T TIGR00973 163 INI 165 (494)
T ss_pred EEe
Confidence 887
|
A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes. |
| >COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.077 Score=49.80 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=43.0
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCC------CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHH
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAP------PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKL 202 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~------~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~I 202 (375)
-+-|+- ..||+.+|.||--+.+-.+ ..++.+||++.++... .+.+.|+||||+. -+. ..+.++++.+
T Consensus 23 ~~vFVR-~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~-~~~~~V~lTGGEP-~~~----~~l~~Ll~~l 95 (212)
T COG0602 23 PSVFVR-FAGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLG-YKARGVSLTGGEP-LLQ----PNLLELLELL 95 (212)
T ss_pred eeEEEE-cCCCCCCCCCCCChhhhcccccCCCCccCHHHHHHHHHhcC-CCcceEEEeCCcC-CCc----ccHHHHHHHH
Confidence 444554 4599999999997643211 2356666665554431 2456999999986 222 1256677777
Q ss_pred HHh
Q 017200 203 KEL 205 (375)
Q Consensus 203 k~~ 205 (375)
++.
T Consensus 96 ~~~ 98 (212)
T COG0602 96 KRL 98 (212)
T ss_pred HhC
Confidence 654
|
|
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.66 Score=43.42 Aligned_cols=112 Identities=21% Similarity=0.287 Sum_probs=84.6
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.++++..+.++++.+.|++-+-+|--. + .-.+.|+.+++.+|++.|.+=+ .. +.+.++...++|.+.+
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit~~t----~-----~a~~~i~~l~~~~~~~~vGAGT--Vl-~~~~a~~a~~aGA~Fi 84 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVTLRT----P-----VALDAIRLLRKEVPDALIGAGT--VL-NPEQLRQAVDAGAQFI 84 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCC----c-----cHHHHHHHHHHHCCCCEEEEEe--CC-CHHHHHHHHHcCCCEE
Confidence 478999999999999999999988621 2 1467889999889987776422 11 7899999999998865
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
|. +..+ -++++.+++ .|+..-.+.| |.-|+...+ +.|.+.+.+|
T Consensus 85 -------------vs-P~~~----~~v~~~~~~---~~i~~iPG~~-----TptEi~~A~----~~Ga~~vKlF 128 (204)
T TIGR01182 85 -------------VS-PGLT----PELAKHAQD---HGIPIIPGVA-----TPSEIMLAL----ELGITALKLF 128 (204)
T ss_pred -------------EC-CCCC----HHHHHHHHH---cCCcEECCCC-----CHHHHHHHH----HCCCCEEEEC
Confidence 33 2332 278888888 4677666664 888887665 7899999887
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.59 Score=43.47 Aligned_cols=112 Identities=21% Similarity=0.384 Sum_probs=81.6
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.++++.++.++++.+.|++-+=+|--. ++ ..+.|+.+++.+|++.|.+=+= . +.+.++...++|.+.+
T Consensus 17 ~~~~~a~~~~~al~~gGi~~iEiT~~t----~~-----a~~~I~~l~~~~p~~~vGAGTV-~--~~e~a~~a~~aGA~Fi 84 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEGGIRAIEITLRT----PN-----ALEAIEALRKEFPDLLVGAGTV-L--TAEQAEAAIAAGAQFI 84 (196)
T ss_dssp SSGGGHHHHHHHHHHTT--EEEEETTS----TT-----HHHHHHHHHHHHTTSEEEEES-----SHHHHHHHHHHT-SEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCC----cc-----HHHHHHHHHHHCCCCeeEEEec-c--CHHHHHHHHHcCCCEE
Confidence 468999999999999999999888532 22 4678899998899988875321 1 7899999999998865
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
|. +..+ -++++.+++. |+..-.+.| |..|+...+ ++|.+.+.+|
T Consensus 85 -------------vS-P~~~----~~v~~~~~~~---~i~~iPG~~-----TptEi~~A~----~~G~~~vK~F 128 (196)
T PF01081_consen 85 -------------VS-PGFD----PEVIEYAREY---GIPYIPGVM-----TPTEIMQAL----EAGADIVKLF 128 (196)
T ss_dssp -------------EE-SS------HHHHHHHHHH---TSEEEEEES-----SHHHHHHHH----HTT-SEEEET
T ss_pred -------------EC-CCCC----HHHHHHHHHc---CCcccCCcC-----CHHHHHHHH----HCCCCEEEEe
Confidence 33 2222 3677888884 688888885 999988765 7899999997
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=94.55 E-value=1.1 Score=42.63 Aligned_cols=158 Identities=8% Similarity=0.023 Sum_probs=95.2
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.|+..+.+.++++.+.|++++++==-|..-.|.-.+. ..+|+.|++..| +.+++.+-+ ..+.++.+.++|+|.+
T Consensus 22 ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVPNitfG--p~~i~~i~~~~~-~DvHLMv~~---P~~~i~~~~~aGad~I 95 (228)
T PRK08091 22 SNWLKFNETLTTLSENQLRLLHFDIADGQFSPFFTVG--AIAIKQFPTHCF-KDVHLMVRD---QFEVAKACVAAGADIV 95 (228)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccC--HHHHHHhCCCCC-EEEEeccCC---HHHHHHHHHHhCCCEE
Confidence 5667888899999999999998765554433431111 346667764344 555655532 2457899999999999
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCC
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPS 316 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~ 316 (375)
....|..+ +-.++++.+|+ .|+.+++++.+.-+-..+++...+. .+|.|.+.. ..|+
T Consensus 96 t~H~Ea~~--------------~~~~~l~~Ik~---~g~~~kaGlalnP~Tp~~~i~~~l~-----~vD~VLiMt-V~PG 152 (228)
T PRK08091 96 TLQVEQTH--------------DLALTIEWLAK---QKTTVLIGLCLCPETPISLLEPYLD-----QIDLIQILT-LDPR 152 (228)
T ss_pred EEcccCcc--------------cHHHHHHHHHH---CCCCceEEEEECCCCCHHHHHHHHh-----hcCEEEEEE-ECCC
Confidence 98888532 12356677777 4666789999888755555554444 255554421 1464
Q ss_pred CCCCCccccCCHHHHHHHHHHHHHhhhh
Q 017200 317 KRHMPVSEYITPEAFERYRALGMEMGFR 344 (375)
Q Consensus 317 ~~~~~v~~~v~pe~~~~l~~~a~~~gf~ 344 (375)
..+-+..+. .-++.++++++-.+.|+.
T Consensus 153 fgGQ~f~~~-~l~KI~~lr~~~~~~~~~ 179 (228)
T PRK08091 153 TGTKAPSDL-ILDRVIQVENRLGNRRVE 179 (228)
T ss_pred CCCccccHH-HHHHHHHHHHHHHhcCCC
Confidence 333322211 123455555554455543
|
|
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=1 Score=42.15 Aligned_cols=113 Identities=21% Similarity=0.251 Sum_probs=84.4
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.++++.++.++++.+.|++-|=||--+ ++ -.+.|+.+++.+|++.|.+=+= + +.+.++...++|.+.+
T Consensus 13 ~~~~~a~~ia~al~~gGi~~iEit~~t----p~-----a~~~I~~l~~~~~~~~vGAGTV-l--~~e~a~~ai~aGA~Fi 80 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLPAIEITLRT----PA-----ALDAIRAVAAEVEEAIVGAGTI-L--NAKQFEDAAKAGSRFI 80 (201)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCC----cc-----HHHHHHHHHHHCCCCEEeeEeC-c--CHHHHHHHHHcCCCEE
Confidence 478999999999999999988888532 11 3578888988889877765221 1 7899999999998865
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeec
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 311 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~q 311 (375)
|. +..+ -++++.+++ .|+..-.+.| |..|+...+ ++|.+.|.+|+
T Consensus 81 -------------vS-P~~~----~~vi~~a~~---~~i~~iPG~~-----TptEi~~A~----~~Ga~~vK~FP 125 (201)
T PRK06015 81 -------------VS-PGTT----QELLAAAND---SDVPLLPGAA-----TPSEVMALR----EEGYTVLKFFP 125 (201)
T ss_pred -------------EC-CCCC----HHHHHHHHH---cCCCEeCCCC-----CHHHHHHHH----HCCCCEEEECC
Confidence 33 2322 367788888 4677777775 898887765 78999998873
|
|
| >PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional | Back alignment and domain information |
|---|
Probab=94.39 E-value=1.7 Score=46.30 Aligned_cols=140 Identities=17% Similarity=0.261 Sum_probs=90.3
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEee-eCCCCCcccHHHHHHHHHHHHHhC-CCcEEEeec----CCCCC-ChHHHHHH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSV-DRDDLADQGSGHFAQTVRKLKELK-PNMLIEALV----PDFRG-NNGCVREV 228 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsg-dr~dl~d~G~~~~~~lir~Ik~~~-p~i~Ie~l~----pd~~g-~~e~l~~L 228 (375)
+++.++.++.++.+.+.|+++|-+... ..++ | .+.++.|.+.. .+..+..+. ++... ++..++.+
T Consensus 23 ~~s~e~Kl~ia~~L~~~Gvd~IEvG~p~as~~--d------~~~~~~i~~~~l~~~~i~~~~~~~~~~i~~~~d~~~e~~ 94 (524)
T PRK12344 23 SFSVEDKLRIARKLDELGVDYIEGGWPGSNPK--D------TEFFKRAKELKLKHAKLAAFGSTRRAGVSAEEDPNLQAL 94 (524)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCcCChh--H------HHHHHHHHHhCCCCcEEEEEeeccccCCCcccHHHHHHH
Confidence 589999999999999999999988542 1111 1 23456665422 245555443 23211 35678889
Q ss_pred HHcCcccccccccchH-HHHHHhcCCCCCHHHHH----HHHHHHHHhCCCCceEEEeEE---EecCCCHHHHHHHHHHHH
Q 017200 229 AKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIM---LGCGETPDQVVSTMEKVR 300 (375)
Q Consensus 229 ~~aGldv~~hnlEtv~-rl~~~mr~r~~s~~~~l----~vl~~ak~~~p~Gl~tkt~im---vGlGET~ee~~etl~~Lr 300 (375)
.++|.+.+...+-+++ .+...++ .+.++.+ +.++.+++ .|+.+.-+.+ =|.-.+.+-+++.++.+.
T Consensus 95 ~~~g~~~i~i~~~~Sd~h~~~~l~---~s~~e~l~~~~~~v~~ak~---~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~ 168 (524)
T PRK12344 95 LDAGTPVVTIFGKSWDLHVTEALR---TTLEENLAMIRDSVAYLKA---HGREVIFDAEHFFDGYKANPEYALATLKAAA 168 (524)
T ss_pred HhCCCCEEEEEECCCHHHHHHHcC---CCHHHHHHHHHHHHHHHHH---cCCeEEEccccccccccCCHHHHHHHHHHHH
Confidence 9999999888777777 3334443 3455555 55566776 4665554433 222234566778889999
Q ss_pred HcCCcEEee
Q 017200 301 AAGVDVMTF 309 (375)
Q Consensus 301 elgvd~v~i 309 (375)
+.|++.+.+
T Consensus 169 ~~Gad~i~l 177 (524)
T PRK12344 169 EAGADWVVL 177 (524)
T ss_pred hCCCCeEEE
Confidence 999999877
|
|
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.39 E-value=1.5 Score=46.11 Aligned_cols=138 Identities=15% Similarity=0.148 Sum_probs=90.0
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCC--CcccHHHHHHHHHHHHHhCCCcEEEee--cCCCCCC--------hH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDL--ADQGSGHFAQTVRKLKELKPNMLIEAL--VPDFRGN--------NG 223 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl--~d~G~~~~~~lir~Ik~~~p~i~Ie~l--~pd~~g~--------~e 223 (375)
.++.++.+..|+++.+.|+..|-+.||..-|- .-. ...=.+.++.|++..|++.+.++ .++..|- ..
T Consensus 21 ~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl-~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~ 99 (467)
T PRK14041 21 RMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFL-NENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVEL 99 (467)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccc-CCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHH
Confidence 47899999999999999999999977743221 000 00124678888877788888763 2333221 22
Q ss_pred HHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC--CCHHHHHHHHHHHHH
Q 017200 224 CVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG--ETPDQVVSTMEKVRA 301 (375)
Q Consensus 224 ~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlG--ET~ee~~etl~~Lre 301 (375)
.++...++|+|++......++ .+.....++.+++ .|..+...+-.-++ -|.+.+++..+.+.+
T Consensus 100 fv~~A~~~Gvd~irif~~lnd------------~~n~~~~i~~ak~---~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~ 164 (467)
T PRK14041 100 FVKKVAEYGLDIIRIFDALND------------IRNLEKSIEVAKK---HGAHVQGAISYTVSPVHTLEYYLEFARELVD 164 (467)
T ss_pred HHHHHHHCCcCEEEEEEeCCH------------HHHHHHHHHHHHH---CCCEEEEEEEeccCCCCCHHHHHHHHHHHHH
Confidence 367778899998876544433 1223455677777 45655555543333 367778888888888
Q ss_pred cCCcEEee
Q 017200 302 AGVDVMTF 309 (375)
Q Consensus 302 lgvd~v~i 309 (375)
.|++.|.|
T Consensus 165 ~Gad~I~i 172 (467)
T PRK14041 165 MGVDSICI 172 (467)
T ss_pred cCCCEEEE
Confidence 88888776
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=94.14 E-value=2 Score=40.49 Aligned_cols=134 Identities=13% Similarity=0.137 Sum_probs=82.0
Q ss_pred cchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccc
Q 017200 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (375)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~h 238 (375)
.+++.+.++.+.+.|+++++++..+++.. ..|. ..+++++|++.. .+.|.+ .+... +.+.++.+.+.|++.+-.
T Consensus 26 ~~d~~~~a~~~~~~G~~~i~i~d~~~~~~-~~~~--~~~~i~~i~~~~-~~pv~~-~GGI~-s~~d~~~~l~~G~~~v~i 99 (243)
T cd04731 26 AGDPVELAKRYNEQGADELVFLDITASSE-GRET--MLDVVERVAEEV-FIPLTV-GGGIR-SLEDARRLLRAGADKVSI 99 (243)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEcCCcccc-cCcc--cHHHHHHHHHhC-CCCEEE-eCCCC-CHHHHHHHHHcCCceEEE
Confidence 45888899999999999999998876422 1222 467888888764 233332 22322 678888888889887655
Q ss_pred cccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEE------------ecCCCHHHHHHHHHHHHHcCCcE
Q 017200 239 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIML------------GCGETPDQVVSTMEKVRAAGVDV 306 (375)
Q Consensus 239 nlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imv------------GlGET~ee~~etl~~Lrelgvd~ 306 (375)
+-... . +.+...++.+...+ ..+.+..++.. |.-+|+.+..+.++.+.+.|++.
T Consensus 100 g~~~~-------~----~p~~~~~i~~~~~~---~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~ 165 (243)
T cd04731 100 NSAAV-------E----NPELIREIAKRFGS---QCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGE 165 (243)
T ss_pred Cchhh-------h----ChHHHHHHHHHcCC---CCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCE
Confidence 42111 1 11222222222211 22444444332 23456778888889999999999
Q ss_pred EeeecC
Q 017200 307 MTFGQY 312 (375)
Q Consensus 307 v~i~qY 312 (375)
+.+..+
T Consensus 166 i~v~~i 171 (243)
T cd04731 166 ILLTSM 171 (243)
T ss_pred EEEecc
Confidence 888543
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.99 Score=42.89 Aligned_cols=163 Identities=16% Similarity=0.176 Sum_probs=93.9
Q ss_pred cchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccc
Q 017200 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (375)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~h 238 (375)
..+|++.|+.+.+.|++++++.--+.. . |...-.++|++|.+.. .+.+. .+.-..+.|.++.+.++|++.+..
T Consensus 31 ~~dp~~~a~~~~~~g~~~l~ivDLd~~--~--g~~~n~~~i~~i~~~~-~~pv~--vgGGirs~edv~~~l~~Ga~kvvi 103 (241)
T PRK14024 31 YGSPLDAALAWQRDGAEWIHLVDLDAA--F--GRGSNRELLAEVVGKL-DVKVE--LSGGIRDDESLEAALATGCARVNI 103 (241)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEecccc--C--CCCccHHHHHHHHHHc-CCCEE--EcCCCCCHHHHHHHHHCCCCEEEE
Confidence 348999999999999999999866542 1 2222348888887754 33333 222222789999999999998766
Q ss_pred cccch--HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE--EEecCCCHHHHHHHHHHHHHcCCcEEeeecCCC
Q 017200 239 NIETV--EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI--MLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMR 314 (375)
Q Consensus 239 nlEtv--~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~i--mvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~ 314 (375)
+-+.. +++...+- +...+..-.++.++-+. +.|.-++..+..+.++.+.+.|++.+.+..--
T Consensus 104 Gs~~l~~p~l~~~i~-------------~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~- 169 (241)
T PRK14024 104 GTAALENPEWCARVI-------------AEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYVVTDVT- 169 (241)
T ss_pred CchHhCCHHHHHHHH-------------HHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEEEEeec-
Confidence 64332 23333332 12212100012222111 23554566778888899999999988875221
Q ss_pred CCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccc
Q 017200 315 PSKRHMPVSEYITPEAFERYRALGMEMGFRYVASG 349 (375)
Q Consensus 315 P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sg 349 (375)
..++- . -| .++.++++.........++|
T Consensus 170 --~~g~~-~---G~-d~~~i~~i~~~~~ipviasG 197 (241)
T PRK14024 170 --KDGTL-T---GP-NLELLREVCARTDAPVVASG 197 (241)
T ss_pred --CCCCc-c---CC-CHHHHHHHHhhCCCCEEEeC
Confidence 11111 1 12 25555555555555555666
|
|
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.78 E-value=1.5 Score=47.40 Aligned_cols=138 Identities=17% Similarity=0.170 Sum_probs=91.1
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCC--CCcccHHHHHHHHHHHHHhCCCcEEEeecCC--CCC--------ChH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD--LADQGSGHFAQTVRKLKELKPNMLIEALVPD--FRG--------NNG 223 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~d--l~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd--~~g--------~~e 223 (375)
.++.++.+.+|+++.+.|+..|-+.||-.-| ++-.+.+ =.+.++.|++..|++.+..+... +.| ..+
T Consensus 23 r~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~-p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~ 101 (593)
T PRK14040 23 RLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGED-PWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVER 101 (593)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCC-HHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHH
Confidence 3789999999999999999999998874332 2111112 25678888888899998877652 111 133
Q ss_pred HHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEE--ecCCCHHHHHHHHHHHHH
Q 017200 224 CVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIML--GCGETPDQVVSTMEKVRA 301 (375)
Q Consensus 224 ~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imv--GlGET~ee~~etl~~Lre 301 (375)
.++...+.|+|++..... ++ ..+.....++.+++ .|..+...|-+ .---|.+.+.+.++.+.+
T Consensus 102 ~v~~a~~~Gid~~rifd~--------ln----d~~~~~~ai~~ak~---~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~ 166 (593)
T PRK14040 102 FVERAVKNGMDVFRVFDA--------MN----DPRNLETALKAVRK---VGAHAQGTLSYTTSPVHTLQTWVDLAKQLED 166 (593)
T ss_pred HHHHHHhcCCCEEEEeee--------CC----cHHHHHHHHHHHHH---cCCeEEEEEEEeeCCccCHHHHHHHHHHHHH
Confidence 477778889998765421 11 13445566777777 45544333322 223466778888888888
Q ss_pred cCCcEEee
Q 017200 302 AGVDVMTF 309 (375)
Q Consensus 302 lgvd~v~i 309 (375)
.|++.|.|
T Consensus 167 ~Gad~i~i 174 (593)
T PRK14040 167 MGVDSLCI 174 (593)
T ss_pred cCCCEEEE
Confidence 88888777
|
|
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.71 E-value=1.4 Score=46.59 Aligned_cols=138 Identities=17% Similarity=0.175 Sum_probs=84.2
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCC--CCcccHHHHHHHHHHHHHhCCCcEEEeecC--CCCC--------ChH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD--LADQGSGHFAQTVRKLKELKPNMLIEALVP--DFRG--------NNG 223 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~d--l~d~G~~~~~~lir~Ik~~~p~i~Ie~l~p--d~~g--------~~e 223 (375)
.++.++.+.+|+++.+.|+..|-+.||..-| +.-.+.+ =.+.++.+++..|++.+..+.- ++.| ...
T Consensus 23 r~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Ed-pwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~ 101 (499)
T PRK12330 23 RMAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNED-PWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDR 101 (499)
T ss_pred cCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCC-HHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHH
Confidence 3789999999999999999999998885433 1100111 2467888888889988887652 1111 144
Q ss_pred HHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE--EEecCCCHHHHHHHHHHHHH
Q 017200 224 CVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI--MLGCGETPDQVVSTMEKVRA 301 (375)
Q Consensus 224 ~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~i--mvGlGET~ee~~etl~~Lre 301 (375)
.++...+.|+|++.......+ .+.....++.+++ .|..+...| +++---|.+.+++..+.+.+
T Consensus 102 fv~~a~~~Gidi~RIfd~lnd------------v~nl~~ai~~vk~---ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~ 166 (499)
T PRK12330 102 FVEKSAENGMDVFRVFDALND------------PRNLEHAMKAVKK---VGKHAQGTICYTVSPIHTVEGFVEQAKRLLD 166 (499)
T ss_pred HHHHHHHcCCCEEEEEecCCh------------HHHHHHHHHHHHH---hCCeEEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 677778889998765422222 1222333444444 233332232 33444466666677777777
Q ss_pred cCCcEEee
Q 017200 302 AGVDVMTF 309 (375)
Q Consensus 302 lgvd~v~i 309 (375)
.|++.|.|
T Consensus 167 ~Gad~I~I 174 (499)
T PRK12330 167 MGADSICI 174 (499)
T ss_pred cCCCEEEe
Confidence 77766655
|
|
| >PLN03228 methylthioalkylmalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.60 E-value=1.3 Score=46.87 Aligned_cols=135 Identities=13% Similarity=0.185 Sum_probs=83.2
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCC---------cEEEeecCCCCCChHHHH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN---------MLIEALVPDFRGNNGCVR 226 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~---------i~Ie~l~pd~~g~~e~l~ 226 (375)
.++.+|-++.|+.+.+.|+++|-+.. +... ..-.+.++.|.+..+. ..+.++..- ..+.++
T Consensus 102 ~fs~eeKi~Ia~~L~~~GVd~IEvG~---Pa~s----~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~---~~~dId 171 (503)
T PLN03228 102 SLTPPQKLEIARQLAKLRVDIMEVGF---PGSS----EEEFEAVKTIAKTVGNEVDEETGYVPVICGIARC---KKRDIE 171 (503)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC---CCCC----HHHHHHHHHHHHhcccccccccccceEEeeeccc---CHhhHH
Confidence 48999999999999999999998754 2211 1234456666543221 223333321 233445
Q ss_pred HHHHc----CcccccccccchH-HHHHHhcCCCCCHHHH----HHHHHHHHHhCCCCceEEEeEEEec---CCCHHHH-H
Q 017200 227 EVAKS----GLNVFAHNIETVE-ELQSAVRDHRANFKQS----LDVLMMAKDYVPAGTLTKTSIMLGC---GETPDQV-V 293 (375)
Q Consensus 227 ~L~~a----Gldv~~hnlEtv~-rl~~~mr~r~~s~~~~----l~vl~~ak~~~p~Gl~tkt~imvGl---GET~ee~-~ 293 (375)
...++ |.+.+...+-+++ .+...++ .+.++. .+.++.|++ .|+. .+.+|. +.++.|+ .
T Consensus 172 ~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~---~s~ee~l~~~~~~V~~Ak~---~G~~---~v~f~~EDa~Rtd~efl~ 242 (503)
T PLN03228 172 AAWEALKYAKRPRILAFTSTSDIHMKYKLK---KTKEEVIEMAVSSIRYAKS---LGFH---DIQFGCEDGGRSDKEFLC 242 (503)
T ss_pred HHHHhhcccCCCEEEEEecCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---cCCc---eEEeccccccccCHHHHH
Confidence 44444 6666766666777 3344444 345554 456667777 3543 245555 5666664 7
Q ss_pred HHHHHHHHcCCcEEee
Q 017200 294 STMEKVRAAGVDVMTF 309 (375)
Q Consensus 294 etl~~Lrelgvd~v~i 309 (375)
+.++.+.+.|++.|.+
T Consensus 243 ~~~~~a~~~Gad~I~l 258 (503)
T PLN03228 243 KILGEAIKAGATSVGI 258 (503)
T ss_pred HHHHHHHhcCCCEEEE
Confidence 8888999999999877
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=93.31 E-value=2.8 Score=39.27 Aligned_cols=164 Identities=13% Similarity=0.137 Sum_probs=95.6
Q ss_pred chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc
Q 017200 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (375)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn 239 (375)
.++++.|+.+.+.|+++++++-.++.... .| .-.++++.|.+.. .+.+.+ -++.. +.+.++.+.++|++.+-.+
T Consensus 30 ~dp~~~a~~~~~~g~~~i~i~dl~~~~~~-~~--~n~~~~~~i~~~~-~~pv~~-~ggi~-~~~d~~~~~~~G~~~vilg 103 (232)
T TIGR03572 30 GDPVNAARIYNAKGADELIVLDIDASKRG-RE--PLFELISNLAEEC-FMPLTV-GGGIR-SLEDAKKLLSLGADKVSIN 103 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCcccC-CC--CCHHHHHHHHHhC-CCCEEE-ECCCC-CHHHHHHHHHcCCCEEEEC
Confidence 47888999999999999999988764221 12 2357777777654 233322 22322 6778888889998876554
Q ss_pred ccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-ceEEEeEEEec----------C---CCHHHHHHHHHHHHHcCCc
Q 017200 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAG-TLTKTSIMLGC----------G---ETPDQVVSTMEKVRAAGVD 305 (375)
Q Consensus 240 lEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~G-l~tkt~imvGl----------G---ET~ee~~etl~~Lrelgvd 305 (375)
-++ + . + .+.++.+.+.++.. +.+..++-.|+ | ++..+.++.++.+.+.|++
T Consensus 104 ~~~----l---~----~----~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d 168 (232)
T TIGR03572 104 TAA----L---E----N----PDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAG 168 (232)
T ss_pred hhH----h---c----C----HHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcCCC
Confidence 211 1 1 0 13333433433221 33344433331 1 2345667888999999999
Q ss_pred EEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccchhhh
Q 017200 306 VMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVR 353 (375)
Q Consensus 306 ~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vr 353 (375)
.+.+....+- .+ ... + .++.++++.........++| -++
T Consensus 169 ~i~i~~i~~~---g~-~~g---~-~~~~~~~i~~~~~ipvia~G-Gi~ 207 (232)
T TIGR03572 169 EILLNSIDRD---GT-MKG---Y-DLELIKTVSDAVSIPVIALG-GAG 207 (232)
T ss_pred EEEEeCCCcc---CC-cCC---C-CHHHHHHHHhhCCCCEEEEC-CCC
Confidence 9988643211 11 011 1 25666777666666777777 444
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=93.20 E-value=2.4 Score=40.53 Aligned_cols=130 Identities=14% Similarity=0.175 Sum_probs=80.8
Q ss_pred chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc
Q 017200 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (375)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn 239 (375)
.+|++.|+.+.+.|+++++++--++..- +...-.++++.|.+.. ++.|.+ .+... +.+.++.+..+|++.+-.+
T Consensus 30 ~dp~~~a~~~~~~G~~~l~v~Dl~~~~~---~~~~n~~~i~~i~~~~-~~pv~~-~GGi~-s~~d~~~~~~~Ga~~vivg 103 (254)
T TIGR00735 30 GDPVELAQRYDEEGADELVFLDITASSE---GRTTMIDVVERTAETV-FIPLTV-GGGIK-SIEDVDKLLRAGADKVSIN 103 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCcccc---cChhhHHHHHHHHHhc-CCCEEE-ECCCC-CHHHHHHHHHcCCCEEEEC
Confidence 4788889999999999999997765421 1233467888887764 233332 22222 6888999999998876554
Q ss_pred ccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCC-CCceEEEeEE-------------E--ecCCCHHHHHHHHHHHHHcC
Q 017200 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVP-AGTLTKTSIM-------------L--GCGETPDQVVSTMEKVRAAG 303 (375)
Q Consensus 240 lEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p-~Gl~tkt~im-------------v--GlGET~ee~~etl~~Lrelg 303 (375)
-++.. ..+.++.+.+.++ .-+.+..++- + |.-++.++.++.++.+.+.|
T Consensus 104 t~~~~---------------~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G 168 (254)
T TIGR00735 104 TAAVK---------------NPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLG 168 (254)
T ss_pred hhHhh---------------ChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcC
Confidence 22211 1133333333333 2133333321 1 12345778889999999999
Q ss_pred CcEEeee
Q 017200 304 VDVMTFG 310 (375)
Q Consensus 304 vd~v~i~ 310 (375)
++.+.+.
T Consensus 169 ~~~iivt 175 (254)
T TIGR00735 169 AGEILLT 175 (254)
T ss_pred CCEEEEe
Confidence 9988884
|
|
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=93.11 E-value=1.7 Score=40.47 Aligned_cols=131 Identities=12% Similarity=0.139 Sum_probs=77.1
Q ss_pred cchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccc
Q 017200 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (375)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~h 238 (375)
..++++.|+.+.+.|+++++++..+.-. .|.....++++.|.+.. .+. +.......+.+.++.+.++|++.+-.
T Consensus 29 ~~~~~~~a~~~~~~g~~~i~v~dld~~~---~g~~~~~~~i~~i~~~~-~~p--v~~~GGI~~~ed~~~~~~~Ga~~vil 102 (233)
T PRK00748 29 SDDPVAQAKAWEDQGAKWLHLVDLDGAK---AGKPVNLELIEAIVKAV-DIP--VQVGGGIRSLETVEALLDAGVSRVII 102 (233)
T ss_pred cCCHHHHHHHHHHcCCCEEEEEeCCccc---cCCcccHHHHHHHHHHC-CCC--EEEcCCcCCHHHHHHHHHcCCCEEEE
Confidence 3578889999999999999999764321 11223567888887753 233 33444445788999999999987654
Q ss_pred cccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe----EE--Eec-CCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 239 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS----IM--LGC-GETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 239 nlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~----im--vGl-GET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
+-...+ . .+...++.+.. +..+.+.-+ .+ .|. ..+..+..+..+.+.+++++.+.+.
T Consensus 103 g~~~l~----~-------~~~l~ei~~~~----~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~ 166 (233)
T PRK00748 103 GTAAVK----N-------PELVKEACKKF----PGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIYT 166 (233)
T ss_pred CchHHh----C-------HHHHHHHHHHh----CCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEEe
Confidence 422211 0 01111222221 221222222 21 233 3355667788888999999976664
|
|
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.07 E-value=2.3 Score=40.31 Aligned_cols=116 Identities=14% Similarity=0.095 Sum_probs=81.4
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.++++..+.++++.+.|++-+=||--.. + ..+.+.++.+.+++.+|++.|.+=+ .. +.+.++...++|.+.+
T Consensus 24 ~~~~~a~~~~~al~~gGi~~iEiT~~tp----~-a~~~i~~l~~~~~~~~p~~~vGaGT--Vl-~~e~a~~a~~aGA~Fi 95 (222)
T PRK07114 24 ADVEVAKKVIKACYDGGARVFEFTNRGD----F-AHEVFAELVKYAAKELPGMILGVGS--IV-DAATAALYIQLGANFI 95 (222)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCC----c-HHHHHHHHHHHHHhhCCCeEEeeEe--Cc-CHHHHHHHHHcCCCEE
Confidence 4789999999999999999888884221 1 1333444445555677887776522 11 7899999999998865
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
|. +..+ -++++.+++ .|+..-.+.| |..|+.+.+ ++|.+.|.+|
T Consensus 96 -------------Vs-P~~~----~~v~~~~~~---~~i~~iPG~~-----TpsEi~~A~----~~Ga~~vKlF 139 (222)
T PRK07114 96 -------------VT-PLFN----PDIAKVCNR---RKVPYSPGCG-----SLSEIGYAE----ELGCEIVKLF 139 (222)
T ss_pred -------------EC-CCCC----HHHHHHHHH---cCCCEeCCCC-----CHHHHHHHH----HCCCCEEEEC
Confidence 33 2322 367777777 4677766765 888887765 6899998887
|
|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=92.97 E-value=2.4 Score=40.91 Aligned_cols=164 Identities=18% Similarity=0.163 Sum_probs=85.3
Q ss_pred cccHHHHHHHHHHHHHhCCCcEEEeec-CC-CCCChHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHH
Q 017200 189 DQGSGHFAQTVRKLKELKPNMLIEALV-PD-FRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMM 266 (375)
Q Consensus 189 d~G~~~~~~lir~Ik~~~p~i~Ie~l~-pd-~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ 266 (375)
+.|.+.|.+.++..++..++..+-+.+ +. ...-.+.++.+.++|.|.+..|+-+-... .-++-..+.+...++++.
T Consensus 79 ~~g~~~~~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~--~~~~~~~~~~~~~eiv~~ 156 (289)
T cd02810 79 NLGLDVWLQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVG--GGRQLGQDPEAVANLLKA 156 (289)
T ss_pred CcCHHHHHHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCC--CCcccccCHHHHHHHHHH
Confidence 344566666665554432222222211 11 00013456666777888777665432100 000012346677788888
Q ss_pred HHHhCCCCceEEEeEEEec--CCCHHHHHHHHHHHHHcCCcEEeeecCCCC----CCCCCC--------ccc-cCCHHHH
Q 017200 267 AKDYVPAGTLTKTSIMLGC--GETPDQVVSTMEKVRAAGVDVMTFGQYMRP----SKRHMP--------VSE-YITPEAF 331 (375)
Q Consensus 267 ak~~~p~Gl~tkt~imvGl--GET~ee~~etl~~Lrelgvd~v~i~qYl~P----~~~~~~--------v~~-~v~pe~~ 331 (375)
+++.. .--+++.+ +.+++|..+.++.+.+.|+|.+.+..-... .....+ +.. .+.|-..
T Consensus 157 vr~~~------~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~ 230 (289)
T cd02810 157 VKAAV------DIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLAL 230 (289)
T ss_pred HHHcc------CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHH
Confidence 88742 12234443 678889999999999999999988533211 000000 000 1223345
Q ss_pred HHHHHHHHHh--hhhhhccchhhhhhcchhHH
Q 017200 332 ERYRALGMEM--GFRYVASGPMVRSSYKVVGW 361 (375)
Q Consensus 332 ~~l~~~a~~~--gf~~~~sgp~vrssy~a~~~ 361 (375)
+.++++.... ....+++| -+++.-.|.++
T Consensus 231 ~~v~~i~~~~~~~ipiia~G-GI~~~~da~~~ 261 (289)
T cd02810 231 RWVARLAARLQLDIPIIGVG-GIDSGEDVLEM 261 (289)
T ss_pred HHHHHHHHhcCCCCCEEEEC-CCCCHHHHHHH
Confidence 6666666666 56666777 55554444433
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=92.92 E-value=5.1 Score=39.26 Aligned_cols=168 Identities=9% Similarity=0.073 Sum_probs=95.8
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.+.+.+...+++..+.+.--|+-++...-.+ .|.+.+..+++...+.. .+.|. +.-|+..+.+.++...++|.+++
T Consensus 26 ~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~--~~~~~~~~~~~~~a~~~-~vpv~-lHlDH~~~~e~i~~Al~~G~tsV 101 (281)
T PRK06806 26 ANMEMVMGAIKAAEELNSPIILQIAEVRLNH--SPLHLIGPLMVAAAKQA-KVPVA-VHFDHGMTFEKIKEALEIGFTSV 101 (281)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCcchhcc--CChHHHHHHHHHHHHHC-CCCEE-EECCCCCCHHHHHHHHHcCCCEE
Confidence 3567777888888888877666665543333 34667777777766544 23332 55566557889999999998877
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhC-CCCceEEEeEEEec-C-C---------CHHHHHHHHHHHHHcCC
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYV-PAGTLTKTSIMLGC-G-E---------TPDQVVSTMEKVRAAGV 304 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~-p~Gl~tkt~imvGl-G-E---------T~ee~~etl~~Lrelgv 304 (375)
.. +....++++.++.-+.+.++. +.|+.+... +|+ | + +--+..+..++.++.|+
T Consensus 102 m~------------d~s~~~~~eni~~t~~v~~~a~~~gv~veaE--~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg~ 167 (281)
T PRK06806 102 MF------------DGSHLPLEENIQKTKEIVELAKQYGATVEAE--IGRVGGSEDGSEDIEMLLTSTTEAKRFAEETDV 167 (281)
T ss_pred EE------------cCCCCCHHHHHHHHHHHHHHHHHcCCeEEEE--eeeECCccCCcccccceeCCHHHHHHHHHhhCC
Confidence 53 223344555444444433332 135555433 233 3 1 12244455666777899
Q ss_pred cEEee--ecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccc
Q 017200 305 DVMTF--GQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASG 349 (375)
Q Consensus 305 d~v~i--~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sg 349 (375)
|++.+ |+.. ++.+.. .+=.++.|+++......-.|+-|
T Consensus 168 DyLAvaiG~~h-g~~~~~------~~l~~~~L~~i~~~~~iPlV~hG 207 (281)
T PRK06806 168 DALAVAIGNAH-GMYNGD------PNLRFDRLQEINDVVHIPLVLHG 207 (281)
T ss_pred CEEEEccCCCC-CCCCCC------CccCHHHHHHHHHhcCCCEEEEC
Confidence 99988 6432 322111 12246666666665555444433
|
|
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=92.88 E-value=2.2 Score=40.09 Aligned_cols=112 Identities=18% Similarity=0.217 Sum_probs=78.7
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.++++.++.++++.+.|++-|=+|- +. + .-.+.|+.+++.+|++.|-+=+ .. +.+.++...++|.+.+
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl--~~--~-----~~~~~I~~l~~~~p~~~IGAGT--Vl-~~~~a~~a~~aGA~Fi 91 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTL--RT--P-----AALEAIRLIAKEVPEALIGAGT--VL-NPEQLAQAIEAGAQFI 91 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEec--CC--c-----cHHHHHHHHHHHCCCCEEEEee--cc-CHHHHHHHHHcCCCEE
Confidence 5789999999999999999998882 11 1 1357889999889987665421 11 6789999999999865
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
+. +..+. ++++.+++ .|+..-.+.+ |..|+.+ ..++|.+.+.+|
T Consensus 92 -------------vs-P~~~~----~vi~~a~~---~~i~~iPG~~-----TptEi~~----a~~~Ga~~vKlF 135 (212)
T PRK05718 92 -------------VS-PGLTP----PLLKAAQE---GPIPLIPGVS-----TPSELML----GMELGLRTFKFF 135 (212)
T ss_pred -------------EC-CCCCH----HHHHHHHH---cCCCEeCCCC-----CHHHHHH----HHHCCCCEEEEc
Confidence 22 23222 67777777 3565554553 7777443 557888888875
|
|
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=92.83 E-value=3.9 Score=37.27 Aligned_cols=113 Identities=19% Similarity=0.297 Sum_probs=78.9
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.++++....++++.+.|++-|.++.-+.. -.+.++.+++.+|++.|.+-+ .. +.+.++...++|.|.+
T Consensus 13 ~~~~~~~~~~~~l~~~G~~~vev~~~~~~---------~~~~i~~l~~~~~~~~iGag~--v~-~~~~~~~a~~~Ga~~i 80 (190)
T cd00452 13 DDAEDALALAEALIEGGIRAIEITLRTPG---------ALEAIRALRKEFPEALIGAGT--VL-TPEQADAAIAAGAQFI 80 (190)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCChh---------HHHHHHHHHHHCCCCEEEEEe--CC-CHHHHHHHHHcCCCEE
Confidence 46889999999999999999998843211 355889999988876665321 11 5788999999999876
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeec
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 311 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~q 311 (375)
.. +..+ .++++.+++. |+ .+|+|.- |.+|..+.+ +.|+|++.+++
T Consensus 81 ~~--------------p~~~----~~~~~~~~~~---~~----~~i~gv~-t~~e~~~A~----~~Gad~i~~~p 125 (190)
T cd00452 81 VS--------------PGLD----PEVVKAANRA---GI----PLLPGVA-TPTEIMQAL----ELGADIVKLFP 125 (190)
T ss_pred Ec--------------CCCC----HHHHHHHHHc---CC----cEECCcC-CHHHHHHHH----HCCCCEEEEcC
Confidence 32 1111 2456666662 33 4567776 888876654 58999999863
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein | Back alignment and domain information |
|---|
Probab=92.82 E-value=6.3 Score=42.03 Aligned_cols=140 Identities=17% Similarity=0.233 Sum_probs=93.3
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHHhC-CCcEEEeec----CCCC-CChHHHHHH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELK-PNMLIEALV----PDFR-GNNGCVREV 228 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTs-gdr~dl~d~G~~~~~~lir~Ik~~~-p~i~Ie~l~----pd~~-g~~e~l~~L 228 (375)
+++.++-++.++.+.+.|+++|-+.- .-.+ . =.+.++.|.+.. .+..|.++. ++.. .++..++.+
T Consensus 19 ~~s~eeKl~Ia~~L~~~GVd~IE~G~p~~s~-------~-d~~~v~~i~~~~~~~~~i~~~~r~~r~~~~~~~d~~~ea~ 90 (526)
T TIGR00977 19 SFSLEDKIRIAERLDDLGIHYIEGGWPGANP-------K-DVQFFWQLKEMNFKNAKIVAFCSTRRPHKKVEEDKMLQAL 90 (526)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCh-------H-HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchHHHHHHH
Confidence 58999999999999999999998741 1111 1 123455554433 245666554 2321 135678999
Q ss_pred HHcCcccccccccchH-HHHHHhcCCCCCHHHHHHH----HHHHHHhCCCCceEEEeEE---EecCCCHHHHHHHHHHHH
Q 017200 229 AKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDV----LMMAKDYVPAGTLTKTSIM---LGCGETPDQVVSTMEKVR 300 (375)
Q Consensus 229 ~~aGldv~~hnlEtv~-rl~~~mr~r~~s~~~~l~v----l~~ak~~~p~Gl~tkt~im---vGlGET~ee~~etl~~Lr 300 (375)
.++|.+++...+-+++ .+...++ .+.++.++. ++.|++ .|+.+.-+.+ -|.--+.+.+++.++.+.
T Consensus 91 ~~~~~~~v~i~~~~Sd~h~~~~l~---~s~ee~l~~~~~~v~~ak~---~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~ 164 (526)
T TIGR00977 91 IKAETPVVTIFGKSWDLHVLEALQ---TTLEENLAMIYDTVAYLKR---QGDEVIYDAEHFFDGYKANPEYALATLATAQ 164 (526)
T ss_pred hcCCCCEEEEEeCCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---cCCeEEEEeeeeeecccCCHHHHHHHHHHHH
Confidence 9999998888777777 4444444 456666655 667777 4565543333 444446788889999999
Q ss_pred HcCCcEEee
Q 017200 301 AAGVDVMTF 309 (375)
Q Consensus 301 elgvd~v~i 309 (375)
+.|++.+.+
T Consensus 165 ~aGad~i~i 173 (526)
T TIGR00977 165 QAGADWLVL 173 (526)
T ss_pred hCCCCeEEE
Confidence 999999887
|
This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases. |
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=92.61 E-value=4.3 Score=36.90 Aligned_cols=76 Identities=12% Similarity=0.242 Sum_probs=50.7
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC-CcEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NMLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p-~i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
.|++...+.++++.+.|+++|.|--.|....+. ...-.+.+++|++..+ .+.+.+.+-+ ..+.++.+.++|+|.
T Consensus 8 ~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~--~~~~~~~v~~i~~~~~~~v~v~lm~~~---~~~~~~~~~~~gadg 82 (210)
T TIGR01163 8 ADFARLGEEVKAVEEAGADWIHVDVMDGHFVPN--LTFGPPVLEALRKYTDLPIDVHLMVEN---PDRYIEDFAEAGADI 82 (210)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCC--cccCHHHHHHHHhcCCCcEEEEeeeCC---HHHHHHHHHHcCCCE
Confidence 577789999999999999999996334333332 2223577888876421 2224444433 356788889999997
Q ss_pred cc
Q 017200 236 FA 237 (375)
Q Consensus 236 ~~ 237 (375)
+.
T Consensus 83 v~ 84 (210)
T TIGR01163 83 IT 84 (210)
T ss_pred EE
Confidence 54
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.59 E-value=1.3 Score=41.62 Aligned_cols=112 Identities=22% Similarity=0.272 Sum_probs=82.6
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.++||.+..++++.+.|++-|-||=- . + .-.+.|+.|++.+|++.|.+=+ .. +.++++.+.++|.+.+
T Consensus 22 ~~~e~a~~~a~Ali~gGi~~IEITl~--s--p-----~a~e~I~~l~~~~p~~lIGAGT--VL-~~~q~~~a~~aGa~fi 89 (211)
T COG0800 22 DDVEEALPLAKALIEGGIPAIEITLR--T--P-----AALEAIRALAKEFPEALIGAGT--VL-NPEQARQAIAAGAQFI 89 (211)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEecC--C--C-----CHHHHHHHHHHhCcccEEcccc--cc-CHHHHHHHHHcCCCEE
Confidence 57899999999999999998888831 1 1 1367899999999976665421 11 7899999999998865
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
+. ++.+ -++++.+.+ .|+.+.-+++ |.-|+...+ ++|.+.+.||
T Consensus 90 -------------Vs-P~~~----~ev~~~a~~---~~ip~~PG~~-----TptEi~~Al----e~G~~~lK~F 133 (211)
T COG0800 90 -------------VS-PGLN----PEVAKAANR---YGIPYIPGVA-----TPTEIMAAL----ELGASALKFF 133 (211)
T ss_pred -------------EC-CCCC----HHHHHHHHh---CCCcccCCCC-----CHHHHHHHH----HcChhheeec
Confidence 22 2333 267777777 4688877775 888887665 6788888876
|
|
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=92.32 E-value=1.9 Score=40.13 Aligned_cols=131 Identities=11% Similarity=0.137 Sum_probs=77.2
Q ss_pred cchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccc
Q 017200 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (375)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~h 238 (375)
..++.+.|+.+.+.|++++++..-+.. +. |.....++++.|++..+ +.+ .......+.+.++.+.++|+|.+-.
T Consensus 28 ~~dp~~~a~~~~~~g~d~l~v~dl~~~-~~--~~~~~~~~i~~i~~~~~-~pv--~~~GgI~~~e~~~~~~~~Gad~vvi 101 (234)
T cd04732 28 SDDPVEVAKKWEEAGAKWLHVVDLDGA-KG--GEPVNLELIEEIVKAVG-IPV--QVGGGIRSLEDIERLLDLGVSRVII 101 (234)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCcc-cc--CCCCCHHHHHHHHHhcC-CCE--EEeCCcCCHHHHHHHHHcCCCEEEE
Confidence 468899999999999999999844331 11 12234678888877642 333 3333233788999999999987654
Q ss_pred cccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC-CceEEEeE----EE--ec-CCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 239 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPA-GTLTKTSI----ML--GC-GETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 239 nlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~-Gl~tkt~i----mv--Gl-GET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
+-+..+ + .+.++.+.+.++. -+.+..++ ++ |. ..+..+..+.++.+.+.|++.+.+.
T Consensus 102 gs~~l~-----------d----p~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~ 166 (234)
T cd04732 102 GTAAVK-----------N----PELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYT 166 (234)
T ss_pred CchHHh-----------C----hHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEE
Confidence 322111 0 1222333332221 12222221 11 11 3456677788888999999988875
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=92.29 E-value=1.4 Score=47.65 Aligned_cols=81 Identities=15% Similarity=0.194 Sum_probs=56.0
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCC--CcccHHHHHHHHHHHHHhCCCcEEEeecC-----CCCC-C----hHH
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDL--ADQGSGHFAQTVRKLKELKPNMLIEALVP-----DFRG-N----NGC 224 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl--~d~G~~~~~~lir~Ik~~~p~i~Ie~l~p-----d~~g-~----~e~ 224 (375)
+..++++..|+++.+.|+..+-+.||..-|- .-.+.+ =.+.++.+++..|++.+..|.- .+.. . ...
T Consensus 23 ~~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~ed-pwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~ 101 (596)
T PRK14042 23 MRTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKED-PWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAF 101 (596)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCC-HHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHH
Confidence 6789999999999999999999999964322 100111 1467888888889998887651 1110 1 335
Q ss_pred HHHHHHcCcccccc
Q 017200 225 VREVAKSGLNVFAH 238 (375)
Q Consensus 225 l~~L~~aGldv~~h 238 (375)
++..++.|+|++-.
T Consensus 102 v~~a~~~Gidv~Ri 115 (596)
T PRK14042 102 VKLAVNNGVDVFRV 115 (596)
T ss_pred HHHHHHcCCCEEEE
Confidence 67778889987744
|
|
| >PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function | Back alignment and domain information |
|---|
Probab=92.22 E-value=4 Score=39.75 Aligned_cols=142 Identities=18% Similarity=0.255 Sum_probs=82.9
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCC-CCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCC-C-hHHHHHHHHcC
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD-LADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG-N-NGCVREVAKSG 232 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~d-l~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g-~-~e~l~~L~~aG 232 (375)
|.+++|+.+.|.+..+.|..-|++=.=|.+| .+....+.|.++++.|++..|++.|...++.-.+ + .+.++.+....
T Consensus 22 P~tpeEia~~A~~c~~AGAa~vH~H~R~~~~G~~s~d~~~~~e~~~~IR~~~pd~iv~~Ttg~~~~~~~~~R~~~v~~~~ 101 (272)
T PF05853_consen 22 PITPEEIAADAVACYEAGAAIVHIHARDDEDGRPSLDPELYAEVVEAIRAACPDLIVQPTTGGGGGPDPEERLAHVEAWK 101 (272)
T ss_dssp --SHHHHHHHHHHHHHHTESEEEE-EE-TTTS-EE--HHHHHHHHHHHHHHSTTSEEEEESSTTTTSGHHHHCTHHHHH-
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCHHHHHHHHHhcC
Confidence 6899999999999999999888776542222 1212368899999999999999999977764221 2 33344443324
Q ss_pred ccccccc----------------ccchHHHHHHhcCCC-------CCHHHHHHHHHHHHHhCCCCc---eEEEeEEEec-
Q 017200 233 LNVFAHN----------------IETVEELQSAVRDHR-------ANFKQSLDVLMMAKDYVPAGT---LTKTSIMLGC- 285 (375)
Q Consensus 233 ldv~~hn----------------lEtv~rl~~~mr~r~-------~s~~~~l~vl~~ak~~~p~Gl---~tkt~imvGl- 285 (375)
+|....+ .+.+.++++.++.++ ++... ++.+..+.+ .|+ ..--.+++|.
T Consensus 102 pd~asl~~gs~n~~~~~~~~~n~~~~~~~~~~~~~e~Gi~pe~ev~d~~~-l~~~~~l~~---~G~l~~p~~~~~vlG~~ 177 (272)
T PF05853_consen 102 PDMASLNPGSMNFGTRDRVYINTPADARELARRMRERGIKPEIEVFDPGH-LRNARRLIE---KGLLPGPLLVNFVLGVP 177 (272)
T ss_dssp -SEEEEE-S-EEESGGCSEE---HHHHHHHHHHHHHTT-EEEEEESSHHH-HHHHHHHHH---TTSS-SSEEEEEEES-T
T ss_pred CCeEEecccccccccCCceecCCHHHHHHHHHHHHHcCCeEEEEEEcHHH-HHHHHHHHH---CCCCCCCeEEEEcccCC
Confidence 5544332 223456666665332 33333 333333444 243 4566677777
Q ss_pred C---CCHHHHHHHHHHHHH
Q 017200 286 G---ETPDQVVSTMEKVRA 301 (375)
Q Consensus 286 G---ET~ee~~etl~~Lre 301 (375)
| -|.+++...++.+.+
T Consensus 178 ~g~~~~~~~l~~~l~~l~~ 196 (272)
T PF05853_consen 178 GGMPATPENLLAMLDMLPE 196 (272)
T ss_dssp TS--S-HHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhcCC
Confidence 4 677777777777766
|
; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B .... |
| >PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 | Back alignment and domain information |
|---|
Probab=92.22 E-value=2 Score=40.09 Aligned_cols=156 Identities=16% Similarity=0.227 Sum_probs=93.4
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCC--cEEEeecCCCCCChHHHHHHHHcCcc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN--MLIEALVPDFRGNNGCVREVAKSGLN 234 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~--i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (375)
.|+..+.+.++++.+.|++.+++==.|..-.|..++ =.++++.|++.. + +.+++.+-+ ....++.++++|+|
T Consensus 9 ad~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~~~--g~~~i~~i~~~~-~~~~DvHLMv~~---P~~~i~~~~~~g~~ 82 (201)
T PF00834_consen 9 ADFLNLEEEIKRLEEAGADWLHIDIMDGHFVPNLTF--GPDIIKAIRKIT-DLPLDVHLMVEN---PERYIEEFAEAGAD 82 (201)
T ss_dssp S-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSSB-B---HHHHHHHHTTS-SSEEEEEEESSS---GGGHHHHHHHHT-S
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeecccccCCcccC--CHHHHHHHhhcC-CCcEEEEeeecc---HHHHHHHHHhcCCC
Confidence 467788999999999999999988777655555322 256788887763 3 345555433 24679999999999
Q ss_pred cccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCC
Q 017200 235 VFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMR 314 (375)
Q Consensus 235 v~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~ 314 (375)
.+...+|+.+. ..++++.+|+ .| .++++.+.-+-..+.+...+ + .+|.|.+-. ..
T Consensus 83 ~i~~H~E~~~~--------------~~~~i~~ik~---~g--~k~GialnP~T~~~~~~~~l----~-~vD~VlvMs-V~ 137 (201)
T PF00834_consen 83 YITFHAEATED--------------PKETIKYIKE---AG--IKAGIALNPETPVEELEPYL----D-QVDMVLVMS-VE 137 (201)
T ss_dssp EEEEEGGGTTT--------------HHHHHHHHHH---TT--SEEEEEE-TTS-GGGGTTTG----C-CSSEEEEES-S-
T ss_pred EEEEcccchhC--------------HHHHHHHHHH---hC--CCEEEEEECCCCchHHHHHh----h-hcCEEEEEE-ec
Confidence 99888885432 2356677777 46 46777776653333332222 1 477777632 25
Q ss_pred CCCCCCCccccCCHHHHHHHHHHHHHhhhh
Q 017200 315 PSKRHMPVSEYITPEAFERYRALGMEMGFR 344 (375)
Q Consensus 315 P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~ 344 (375)
|+..+-+..+. .-++.++++++..+.|+.
T Consensus 138 PG~~Gq~f~~~-~~~KI~~l~~~~~~~~~~ 166 (201)
T PF00834_consen 138 PGFGGQKFIPE-VLEKIRELRKLIPENGLD 166 (201)
T ss_dssp TTTSSB--HGG-HHHHHHHHHHHHHHHTCG
T ss_pred CCCCcccccHH-HHHHHHHHHHHHHhcCCc
Confidence 75444333221 235677777777775543
|
1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D .... |
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=91.83 E-value=3.6 Score=43.25 Aligned_cols=137 Identities=17% Similarity=0.175 Sum_probs=79.6
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCC--CCcccHHHHHHHHHHHHHhCCCcEEEeecCC--CCC------C--hHH
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDD--LADQGSGHFAQTVRKLKELKPNMLIEALVPD--FRG------N--NGC 224 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~d--l~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd--~~g------~--~e~ 224 (375)
++.++++..|+++.+.|+..|-+.||-.-| +.-.+.+ =.+.++.+++..|++.+..|.-. +.| + ...
T Consensus 32 ~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~ed-pwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~f 110 (468)
T PRK12581 32 LSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNED-PWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKF 110 (468)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCC-HHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHH
Confidence 778999999999999999999999986444 1110011 14678888888898888765431 112 1 223
Q ss_pred HHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec--CCCHHHHHHHHHHHHHc
Q 017200 225 VREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC--GETPDQVVSTMEKVRAA 302 (375)
Q Consensus 225 l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl--GET~ee~~etl~~Lrel 302 (375)
++..++.|+|++-.. ..++ ..+.....++.+|+ .|..+...|.+=. .-|.+-+++..+.+.+.
T Consensus 111 v~~a~~~Gidi~Rif--------d~ln----d~~n~~~ai~~ak~---~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~ 175 (468)
T PRK12581 111 ISLSAQNGIDVFRIF--------DALN----DPRNIQQALRAVKK---TGKEAQLCIAYTTSPVHTLNYYLSLVKELVEM 175 (468)
T ss_pred HHHHHHCCCCEEEEc--------ccCC----CHHHHHHHHHHHHH---cCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHc
Confidence 667778888876432 1222 23344445555555 3443332221111 22444455666666666
Q ss_pred CCcEEee
Q 017200 303 GVDVMTF 309 (375)
Q Consensus 303 gvd~v~i 309 (375)
|++.|.|
T Consensus 176 Gad~I~I 182 (468)
T PRK12581 176 GADSICI 182 (468)
T ss_pred CCCEEEE
Confidence 6666555
|
|
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=91.71 E-value=8.5 Score=37.69 Aligned_cols=167 Identities=18% Similarity=0.197 Sum_probs=94.5
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.+.+.+...++++.+.+.--|+..+...-++. +|...+...++.+.+....+.|- +.-|...+.+.++...++|.+++
T Consensus 24 ~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~vpv~-lhlDH~~~~e~i~~ai~~Gf~sV 101 (282)
T TIGR01859 24 NNLEWTQAILEAAEEENSPVIIQVSEGAIKYM-GGYKMAVAMVKTLIERMSIVPVA-LHLDHGSSYESCIKAIKAGFSSV 101 (282)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCcchhhcc-CcHHHHHHHHHHHHHHCCCCeEE-EECCCCCCHHHHHHHHHcCCCEE
Confidence 35677778888888888887877766543332 34677888888887765323332 44465556788889999998765
Q ss_pred cccccchHHHHHHhcCCCCCHHHHH----HHHHHHHHhCCCCceEEEeEEEec--CCCH---------HHHHHHHHHHHH
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIMLGC--GETP---------DQVVSTMEKVRA 301 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l----~vl~~ak~~~p~Gl~tkt~imvGl--GET~---------ee~~etl~~Lre 301 (375)
-. +....++++.+ ++.+.++. .|+.+. .=+|. |+.+ .+..+..+++++
T Consensus 102 mi------------d~s~l~~~eni~~t~~v~~~a~~---~gv~Ve--~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~ 164 (282)
T TIGR01859 102 MI------------DGSHLPFEENLALTKKVVEIAHA---KGVSVE--AELGTLGGIEDGVDEKEAELADPDEAEQFVKE 164 (282)
T ss_pred EE------------CCCCCCHHHHHHHHHHHHHHHHH---cCCEEE--EeeCCCcCccccccccccccCCHHHHHHHHHH
Confidence 32 11233444444 44444444 243322 12233 2111 145556677777
Q ss_pred cCCcEEe--eecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccc
Q 017200 302 AGVDVMT--FGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASG 349 (375)
Q Consensus 302 lgvd~v~--i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sg 349 (375)
.|+|.+. +|+.. +..+..| .+ .++.|+++....+.-.++=|
T Consensus 165 tgvD~Lavs~Gt~h-g~~~~~~---~l---~~e~L~~i~~~~~iPlv~hG 207 (282)
T TIGR01859 165 TGVDYLAAAIGTSH-GKYKGEP---GL---DFERLKEIKELTNIPLVLHG 207 (282)
T ss_pred HCcCEEeeccCccc-cccCCCC---cc---CHHHHHHHHHHhCCCEEEEC
Confidence 8999988 44321 1111111 11 26667776666655444444
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=91.68 E-value=1.7 Score=42.58 Aligned_cols=131 Identities=11% Similarity=0.152 Sum_probs=79.0
Q ss_pred CCcchHHHHHHHHHhcC-----CcEEEEEeeeCCCCCcccHHHHHHHHHHHHHh--CCCcEEEeecCCCCCChHHHHHHH
Q 017200 157 PDPDEPTNVAEAIASWG-----LDYVVITSVDRDDLADQGSGHFAQTVRKLKEL--KPNMLIEALVPDFRGNNGCVREVA 229 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G-----~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~--~p~i~Ie~l~pd~~g~~e~l~~L~ 229 (375)
.+.++-++.++.+.+.| +++|-+++-.. ..+.++.+.++.. .|. |..+ ...+.+-++...
T Consensus 18 ~~~~~Kv~i~~~L~~~G~~~~~v~~IE~~s~~~--------~d~~~v~~~~~~~~~~~~--v~~~---~r~~~~die~A~ 84 (279)
T cd07947 18 YTVEQIVKIYDYLHELGGGSGVIRQTEFFLYTE--------KDREAVEACLDRGYKFPE--VTGW---IRANKEDLKLVK 84 (279)
T ss_pred CCHHHHHHHHHHHHHcCCCCCccceEEecCcCh--------HHHHHHHHHHHcCCCCCE--EEEE---ecCCHHHHHHHH
Confidence 47889999999999999 99998754311 2233333333321 233 3322 222667789999
Q ss_pred HcCcccccccccchH-HHHHHhcCCCCCHHHHHH----HHHHHHHhCCCCceEEEeEEEecCCCHHH--------HHHHH
Q 017200 230 KSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLD----VLMMAKDYVPAGTLTKTSIMLGCGETPDQ--------VVSTM 296 (375)
Q Consensus 230 ~aGldv~~hnlEtv~-rl~~~mr~r~~s~~~~l~----vl~~ak~~~p~Gl~tkt~imvGlGET~ee--------~~etl 296 (375)
++|++.+...+-+++ -.+..++ .+.++.++ +++.+++ .|+.+..++ = |.+..+ +.+.+
T Consensus 85 ~~g~~~v~i~~s~S~~~~~~~~~---~t~~e~l~~~~~~v~~a~~---~g~~v~~~~-e--d~~r~d~~~~v~~~~~~~~ 155 (279)
T cd07947 85 EMGLKETGILMSVSDYHIFKKLK---MTREEAMEKYLEIVEEALD---HGIKPRCHL-E--DITRADIYGFVLPFVNKLM 155 (279)
T ss_pred HcCcCEEEEEEcCCHHHHHHHhC---cCHHHHHHHHHHHHHHHHH---CCCeEEEEE-E--cccCCCcccchHHHHHHHH
Confidence 999999888887777 4445554 34555555 5555665 466555444 1 444442 22333
Q ss_pred HHHHHcCCc-EEee
Q 017200 297 EKVRAAGVD-VMTF 309 (375)
Q Consensus 297 ~~Lrelgvd-~v~i 309 (375)
+...+.|++ .|.+
T Consensus 156 ~~~~~~G~~~~i~l 169 (279)
T cd07947 156 KLSKESGIPVKIRL 169 (279)
T ss_pred HHHHHCCCCEEEEe
Confidence 444458998 6766
|
Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with |
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=91.56 E-value=5.5 Score=37.44 Aligned_cols=112 Identities=17% Similarity=0.201 Sum_probs=80.4
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC---CCcEEEeecCCCCCChHHHHHHHHcCc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK---PNMLIEALVPDFRGNNGCVREVAKSGL 233 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~---p~i~Ie~l~pd~~g~~e~l~~L~~aGl 233 (375)
.+.++.+..++++.+.|++-+=+|--. ++ -.+.|+.|++.+ |++.|.+=+ .. +.+.++...++|.
T Consensus 22 ~~~~~a~~~~~al~~~Gi~~iEit~~~----~~-----a~~~i~~l~~~~~~~p~~~vGaGT--V~-~~~~~~~a~~aGA 89 (213)
T PRK06552 22 ESKEEALKISLAVIKGGIKAIEVTYTN----PF-----ASEVIKELVELYKDDPEVLIGAGT--VL-DAVTARLAILAGA 89 (213)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCC----cc-----HHHHHHHHHHHcCCCCCeEEeeee--CC-CHHHHHHHHHcCC
Confidence 478999999999999999988887421 21 357888898887 456665422 11 7889999999998
Q ss_pred ccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 234 NVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 234 dv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
+.+ |. +..+ -++++.+++ .|+..-.+. .|..|+.+.+ +.|.|++.+|
T Consensus 90 ~Fi-------------vs-P~~~----~~v~~~~~~---~~i~~iPG~-----~T~~E~~~A~----~~Gad~vklF 136 (213)
T PRK06552 90 QFI-------------VS-PSFN----RETAKICNL---YQIPYLPGC-----MTVTEIVTAL----EAGSEIVKLF 136 (213)
T ss_pred CEE-------------EC-CCCC----HHHHHHHHH---cCCCEECCc-----CCHHHHHHHH----HcCCCEEEEC
Confidence 865 33 2333 267777777 456655555 4888887775 5899999985
|
|
| >TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type | Back alignment and domain information |
|---|
Probab=91.45 E-value=6.4 Score=42.34 Aligned_cols=140 Identities=11% Similarity=0.067 Sum_probs=85.9
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHh---CCCcEEEeecCCCCCC-hHHHHHHHHc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL---KPNMLIEALVPDFRGN-NGCVREVAKS 231 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~---~p~i~Ie~l~pd~~g~-~e~l~~L~~a 231 (375)
+++.++=++.++.|.+.|+++|-+.-..-. ... .+.++.+.+. .+++.+.++.+...++ +..++.+..+
T Consensus 44 ~~s~e~Ki~ia~~L~~~Gvd~IE~Gfp~~s------~~D-~e~v~~i~~~~l~~~~~~i~al~~~~~~did~a~~a~~~~ 116 (564)
T TIGR00970 44 PMSPARKRRYFDLLVRIGFKEIEVGFPSAS------QTD-FDFVREIIEQGAIPDDVTIQVLTQSREELIERTFEALSGA 116 (564)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCC------HHH-HHHHHHHHHhcCCCCCcEEEEEcCCchhhHHHHHHHhcCC
Confidence 589999999999999999999987632211 112 2334444333 1357888888876432 2334444455
Q ss_pred CcccccccccchH-HHHHHhcCCCCCHHHHHHHHHH----HHHhCCCC-ceEEEeEEEec-CC----CH-HHHHHHHHHH
Q 017200 232 GLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMM----AKDYVPAG-TLTKTSIMLGC-GE----TP-DQVVSTMEKV 299 (375)
Q Consensus 232 Gldv~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl~~----ak~~~p~G-l~tkt~imvGl-GE----T~-ee~~etl~~L 299 (375)
+.+.+...+-+++ -+...++ .+.++.++.+.. +++....+ ..+.+.+.+=| +| ++ +.+++.++.+
T Consensus 117 ~~~~v~i~~~~Sd~h~~~~l~---~s~ee~l~~~~~~v~~ak~~~~~~~~~~~~~~~v~f~~Ed~~r~d~~~l~~~~~~a 193 (564)
T TIGR00970 117 KRATVHFYNATSILFREVVFR---ASRAEVQAIATDGTKLVRKCTKQAAKYPGTQWRFEYSPESFSDTELEFAKEVCEAV 193 (564)
T ss_pred CCCEEEEEEcCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecccCCCCCHHHHHHHHHHH
Confidence 5456777777777 3334443 467777665544 55532111 12345556667 78 54 6667888999
Q ss_pred HHcCCc
Q 017200 300 RAAGVD 305 (375)
Q Consensus 300 relgvd 305 (375)
.++|.+
T Consensus 194 ~~ag~~ 199 (564)
T TIGR00970 194 KEVWAP 199 (564)
T ss_pred HHhCCC
Confidence 999863
|
A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria. |
| >PRK14057 epimerase; Provisional | Back alignment and domain information |
|---|
Probab=91.42 E-value=4 Score=39.57 Aligned_cols=125 Identities=11% Similarity=0.034 Sum_probs=78.4
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.|+..+.+.++.+.+.|++.+++==-|..-.|.-.+ =.++++.|++..| +.+++.+-+ ....++.+.++|+|.+
T Consensus 29 aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPNitf--Gp~~i~~i~~~~p-~DvHLMV~~---P~~~i~~~~~aGad~I 102 (254)
T PRK14057 29 GQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTV--GPWAVGQLPQTFI-KDVHLMVAD---QWTAAQACVKAGAHCI 102 (254)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEeccCCccCCcccc--CHHHHHHhccCCC-eeEEeeeCC---HHHHHHHHHHhCCCEE
Confidence 566788899999999999999876555433343111 1356677765444 455555432 2457899999999999
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCce-------EEEeEEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-------TKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~-------tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i 309 (375)
....|+.+. -.++++.+|+ .|++ .++++-+.-+=..+.+...+. .+|.|.+
T Consensus 103 t~H~Ea~~~--------------~~~~l~~Ir~---~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~-----~vD~VLv 160 (254)
T PRK14057 103 TLQAEGDIH--------------LHHTLSWLGQ---QTVPVIGGEMPVIRGISLCPATPLDVIIPILS-----DVEVIQL 160 (254)
T ss_pred EEeeccccC--------------HHHHHHHHHH---cCCCcccccccceeEEEECCCCCHHHHHHHHH-----hCCEEEE
Confidence 988885421 1345555565 3432 467777777755555544443 3565544
|
|
| >cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=91.25 E-value=7.6 Score=38.11 Aligned_cols=138 Identities=12% Similarity=0.140 Sum_probs=85.9
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHh---CCCcEEEeecCCCCCChHHHHHHHHc-
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL---KPNMLIEALVPDFRGNNGCVREVAKS- 231 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~---~p~i~Ie~l~pd~~g~~e~l~~L~~a- 231 (375)
.++.++-++.++.+.+.|+++|-++- |...+ . =.+.++.|.+. .+...+.++.+... +.++...++
T Consensus 19 ~~s~~~Ki~ia~~L~~~Gv~~IE~gf---P~~~~--~--e~e~~~~i~~~~~~~~~~~~~al~r~~~---~die~a~~~~ 88 (284)
T cd07942 19 PMSVEQKLRFFKLLVKIGFKEIEVGF---PSASQ--T--DFDFVRELIEEDLIPDDVTIQVLTQARE---DLIERTFEAL 88 (284)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC---CCCCH--H--HHHHHHHHHHccCCCCCCEEEEEcCCCh---hhHHHHHHHh
Confidence 48999999999999999999998762 44433 1 23567777443 23577778887653 335666665
Q ss_pred -Ccc--cccccccchH-HHHHHhcCCCCCHHHHHH----HHHHHHHhCCCCce-EEEeEEEec-C----CCH-HHHHHHH
Q 017200 232 -GLN--VFAHNIETVE-ELQSAVRDHRANFKQSLD----VLMMAKDYVPAGTL-TKTSIMLGC-G----ETP-DQVVSTM 296 (375)
Q Consensus 232 -Gld--v~~hnlEtv~-rl~~~mr~r~~s~~~~l~----vl~~ak~~~p~Gl~-tkt~imvGl-G----ET~-ee~~etl 296 (375)
|++ .+...+-+++ -+..+++ .+.++.++ .++.+++. |+. +.+++-+-+ | .++ +.+.+.+
T Consensus 89 ~~~~~~~v~i~~~~Sd~h~~~~~~---~s~~e~~~~~~~~v~~a~~~---g~~~~~~~~~~~~~~EDasr~~~~~l~~~~ 162 (284)
T cd07942 89 RGAKKAIVHLYNATSPLQRRVVFG---KSKEEIIEIAVDGAKLVKEL---AAKYPETDWRFEYSPESFSDTELDFALEVC 162 (284)
T ss_pred CCCCCCEEEEEEcCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHh---cccccCceEEEEECCccCCCCCHHHHHHHH
Confidence 554 4655566677 4444554 34566655 55556663 432 234555655 5 454 5566777
Q ss_pred HHHHHc---CCc---EEee
Q 017200 297 EKVRAA---GVD---VMTF 309 (375)
Q Consensus 297 ~~Lrel---gvd---~v~i 309 (375)
+.+.+. +++ .|.+
T Consensus 163 ~~~~~~~~~g~~~~~~i~l 181 (284)
T cd07942 163 EAVIDVWQPTPENKIILNL 181 (284)
T ss_pred HHHHHhhcCCCCcceEEEc
Confidence 777776 444 5555
|
Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.15 E-value=5.2 Score=42.30 Aligned_cols=129 Identities=22% Similarity=0.296 Sum_probs=82.2
Q ss_pred hHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc-
Q 017200 161 EPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN- 239 (375)
Q Consensus 161 Ei~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn- 239 (375)
+.++.++++.+.|++.|+|+.-+.. .....+.|+.|++.+|++.|-+ ++.. +.+..+.+.++|+|.+-.+
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~a~G~------s~~~~~~i~~ik~~~~~~~v~a--G~V~-t~~~a~~~~~aGad~I~vg~ 311 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDSSQGN------SIYQIDMIKKLKSNYPHVDIIA--GNVV-TADQAKNLIDAGADGLRIGM 311 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEecCCCC------chHHHHHHHHHHhhCCCceEEE--CCcC-CHHHHHHHHHcCCCEEEECC
Confidence 3478899999999999999875322 2234789999999888765543 3332 6789999999999988433
Q ss_pred ----ccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEE--ecCCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 240 ----IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIML--GCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 240 ----lEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imv--GlGET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
+.+...+. -+. .....-..++.+.+++ .|++ +|. |. -|..|+...+ .+|.+.|-+|..+
T Consensus 312 g~Gs~~~t~~~~-~~g--~p~~~ai~~~~~~~~~---~~v~----vIadGGi-~~~~di~kAl----a~GA~~Vm~G~~~ 376 (495)
T PTZ00314 312 GSGSICITQEVC-AVG--RPQASAVYHVARYARE---RGVP----CIADGGI-KNSGDICKAL----ALGADCVMLGSLL 376 (495)
T ss_pred cCCcccccchhc-cCC--CChHHHHHHHHHHHhh---cCCe----EEecCCC-CCHHHHHHHH----HcCCCEEEECchh
Confidence 22211111 111 1123333445555555 2443 333 22 5788887776 4888988888665
|
|
| >PLN02321 2-isopropylmalate synthase | Back alignment and domain information |
|---|
Probab=91.09 E-value=6.6 Score=42.84 Aligned_cols=140 Identities=15% Similarity=0.169 Sum_probs=80.0
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEee-eCCCCCcccHHHHHHHHHHHHHhC-CCc----EEEeecCCCCCChHHHHHHH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSV-DRDDLADQGSGHFAQTVRKLKELK-PNM----LIEALVPDFRGNNGCVREVA 229 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsg-dr~dl~d~G~~~~~~lir~Ik~~~-p~i----~Ie~l~pd~~g~~e~l~~L~ 229 (375)
.++.+|-++.++.+.+.|+++|-+..- -.++ | ++ .++.|.+.. +.+ .+..+..--+.+.+.++...
T Consensus 104 ~~s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp~--D--~e----~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~A~ 175 (632)
T PLN02321 104 TLTSKEKLDIARQLAKLGVDIIEAGFPIASPD--D--LE----AVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDAAW 175 (632)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCcCCCcc--H--HH----HHHHHHHhcccCCCccccceeeeeehhccHHhHHHHH
Confidence 489999999999999999999988652 2221 2 22 245554331 111 11111111122456667666
Q ss_pred HcCcc----cccccccchH-HHHHHhcCCCCCHHHHHHHH----HHHHHhCCCCce-EEEeEEEecCCCHHHHHHHHHHH
Q 017200 230 KSGLN----VFAHNIETVE-ELQSAVRDHRANFKQSLDVL----MMAKDYVPAGTL-TKTSIMLGCGETPDQVVSTMEKV 299 (375)
Q Consensus 230 ~aGld----v~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl----~~ak~~~p~Gl~-tkt~imvGlGET~ee~~etl~~L 299 (375)
+++.+ .+...+-+++ .+...++ .+.++.++.+ +.+++ .|.. +.-+..-+.--..+.+++.++.+
T Consensus 176 ~al~~a~~~~I~i~~stSd~h~~~~l~---~t~ee~l~~~~~~V~~Ak~---~G~~~v~fs~EDa~rtd~d~l~~~~~~a 249 (632)
T PLN02321 176 EAVKHAKRPRIHTFIATSEIHMEHKLR---KTPDEVVEIARDMVKYARS---LGCEDVEFSPEDAGRSDPEFLYRILGEV 249 (632)
T ss_pred HHhcCCCCCEEEEEEcCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---cCCceEEEecccCCCCCHHHHHHHHHHH
Confidence 66332 3444455666 3444443 4677776644 45555 3432 22222222223456666888999
Q ss_pred HHcCCcEEee
Q 017200 300 RAAGVDVMTF 309 (375)
Q Consensus 300 relgvd~v~i 309 (375)
.+.|++.|.+
T Consensus 250 ~~aGa~~I~L 259 (632)
T PLN02321 250 IKAGATTLNI 259 (632)
T ss_pred HHcCCCEEEe
Confidence 9999999887
|
|
| >TIGR02146 LysS_fung_arch homocitrate synthase | Back alignment and domain information |
|---|
Probab=90.92 E-value=13 Score=36.48 Aligned_cols=142 Identities=16% Similarity=0.171 Sum_probs=90.3
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
.++.++.++.++.+.+.|+++|-+++.... ++ ..+..+.+........+-.+.+. ..+.++...+.|++.
T Consensus 16 ~~~~~~ki~i~~~l~~~Gv~~iE~g~p~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~ 85 (344)
T TIGR02146 16 NFSTEQKIEIAKALDEFGIDYIEVTHPAAS--KQ-----SRIDIEIIASLGLKANIVTHIRC---RLDDAKVAVELGVDG 85 (344)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCC--HH-----HHHHHHHHHhcCCCcEEEEECCC---CHHHHHHHHHCCcCE
Confidence 377889999999999999999998874311 11 12233333322212233334432 356678888888887
Q ss_pred ccccccchH-HHHHHhc-CCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 236 FAHNIETVE-ELQSAVR-DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 236 ~~hnlEtv~-rl~~~mr-~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
+....-..+ .....+. ......+.....++.+++ .|+.+..+++-.+-...+++++..+.+.+++++.+.+.
T Consensus 86 ~~~~~~~s~~~~~~~~~~~~~~~~~~v~~~~e~a~~---~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~i~~~ 159 (344)
T TIGR02146 86 IDIFFGTSKLLRIAEHRSDAKSILESARETIEYAKS---AGLEVRFSAEDTFRSELADLLSIYETVGVFGVDRVGIA 159 (344)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH---CCCeEEEEEeeCCCCCHHHHHHHHHHHHHCCCCEEEEc
Confidence 655433322 2233322 112223455567788887 46778888887777778999999999999999987663
|
This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs. |
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=90.80 E-value=2.1 Score=40.96 Aligned_cols=184 Identities=19% Similarity=0.254 Sum_probs=103.2
Q ss_pred HHHHHhcCCcEEEEEeee---CCCCCccc---HHHHHHHHHHHHHhCCCcEEEeecCCC---CCC----hHHHHHHHHcC
Q 017200 166 AEAIASWGLDYVVITSVD---RDDLADQG---SGHFAQTVRKLKELKPNMLIEALVPDF---RGN----NGCVREVAKSG 232 (375)
Q Consensus 166 a~al~~~G~~eIvLTsgd---r~dl~d~G---~~~~~~lir~Ik~~~p~i~Ie~l~pd~---~g~----~e~l~~L~~aG 232 (375)
|+.+.+.|++-+.++|-- ---++|.+ .+.+...++.|.... .+. ++.|. .|+ .+.++.+.++|
T Consensus 22 A~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~---~~P-v~~D~~~G~g~~~~~~~~v~~~~~~G 97 (243)
T cd00377 22 ARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAV---DLP-VIADADTGYGNALNVARTVRELEEAG 97 (243)
T ss_pred HHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhc---cCC-EEEEcCCCCCCHHHHHHHHHHHHHcC
Confidence 566677799877776642 11445544 344555555554432 222 11121 123 34467778888
Q ss_pred cccccccccchHHHHHHhcC-----CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEe-----cC-CCHHHHHHHHHHHHH
Q 017200 233 LNVFAHNIETVEELQSAVRD-----HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG-----CG-ETPDQVVSTMEKVRA 301 (375)
Q Consensus 233 ldv~~hnlEtv~rl~~~mr~-----r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvG-----lG-ET~ee~~etl~~Lre 301 (375)
++.+.. |- ..+++-+. .-.+.+++.+.++.+++.... + ...-|+.+ .| +..+|.++-.+...+
T Consensus 98 ~~gv~i--ED--~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~-~-~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~ 171 (243)
T cd00377 98 AAGIHI--ED--QVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDD-L-PDFVIIARTDALLAGEEGLDEAIERAKAYAE 171 (243)
T ss_pred CEEEEE--ec--CCCCccccCCCCCeecCHHHHHHHHHHHHHHHhc-c-CCeEEEEEcCchhccCCCHHHHHHHHHHHHH
Confidence 776543 31 11111110 124788888888888886533 3 34555555 55 689999999999999
Q ss_pred cCCcEEeeecCCCC-------CCCCCCccccCCHH----HHHHHHHHHHHhhhhhhccch-hhhhhcchhHHHH
Q 017200 302 AGVDVMTFGQYMRP-------SKRHMPVSEYITPE----AFERYRALGMEMGFRYVASGP-MVRSSYKVVGWCY 363 (375)
Q Consensus 302 lgvd~v~i~qYl~P-------~~~~~~v~~~v~pe----~~~~l~~~a~~~gf~~~~sgp-~vrssy~a~~~~~ 363 (375)
.|.|.+-+-....+ .....|+.=+..|. ..++| .++||..+.-|+ +.|+.++|-+.++
T Consensus 172 AGAD~v~v~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~l----~~lG~~~v~~~~~~~~~a~~a~~~~~ 241 (243)
T cd00377 172 AGADGIFVEGLKDPEEIRAFAEAPDVPLNVNMTPGGNLLTVAEL----AELGVRRVSYGLALLRAAAKAMREAA 241 (243)
T ss_pred cCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEecCCCCCCCHHHH----HHCCCeEEEEChHHHHHHHHHHHHHH
Confidence 99998766311111 00123332222221 13333 356998887776 7888888765544
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=90.71 E-value=8.1 Score=36.73 Aligned_cols=131 Identities=15% Similarity=0.164 Sum_probs=76.8
Q ss_pred cchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccc
Q 017200 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (375)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~h 238 (375)
..++.+.|+.+.+.|+++++++.-+++.- . ...-.++++.|++.. ++.|.+ .+... +.+.++.+.++|++.+-.
T Consensus 29 ~~d~~~~a~~~~~~G~~~i~i~dl~~~~~-~--~~~~~~~i~~i~~~~-~ipv~~-~GGi~-s~~~~~~~l~~Ga~~Vii 102 (253)
T PRK02083 29 AGDPVELAKRYNEEGADELVFLDITASSE-G--RDTMLDVVERVAEQV-FIPLTV-GGGIR-SVEDARRLLRAGADKVSI 102 (253)
T ss_pred cCCHHHHHHHHHHcCCCEEEEEeCCcccc-c--CcchHHHHHHHHHhC-CCCEEe-eCCCC-CHHHHHHHHHcCCCEEEE
Confidence 45788889999999999999998876421 1 133577888887754 233332 22332 688899998999887755
Q ss_pred cccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCC-CCceEEEeEE-----------E--ecCCCHHHHHHHHHHHHHcCC
Q 017200 239 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP-AGTLTKTSIM-----------L--GCGETPDQVVSTMEKVRAAGV 304 (375)
Q Consensus 239 nlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p-~Gl~tkt~im-----------v--GlGET~ee~~etl~~Lrelgv 304 (375)
+-+.. .. .+.++.+.+.++ ..+.+..++. . |.-.+..+..+..+.+.+.|+
T Consensus 103 gt~~l-------~~--------p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~ 167 (253)
T PRK02083 103 NSAAV-------AN--------PELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGA 167 (253)
T ss_pred ChhHh-------hC--------cHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCC
Confidence 42111 10 123333333332 1133333321 1 111234456677778888999
Q ss_pred cEEeee
Q 017200 305 DVMTFG 310 (375)
Q Consensus 305 d~v~i~ 310 (375)
+.+.+.
T Consensus 168 ~~ii~~ 173 (253)
T PRK02083 168 GEILLT 173 (253)
T ss_pred CEEEEc
Confidence 988774
|
|
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=90.61 E-value=4.1 Score=39.60 Aligned_cols=165 Identities=15% Similarity=0.002 Sum_probs=93.4
Q ss_pred cchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccc
Q 017200 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (375)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~h 238 (375)
.++|++.|+...+.|++.++|+ || |+|...-.++|++|.+ .+ +.|++ -+..+ . |.++.+.++|++.+-.
T Consensus 42 ~~dP~~~A~~~~~~Ga~~lHvV-----DL-dgg~~~n~~~i~~i~~-~~-~~vqv-GGGIR-~-e~i~~~l~~Ga~rVii 110 (262)
T PLN02446 42 DKSAAEFAEMYKRDGLTGGHVI-----ML-GADDASLAAALEALRA-YP-GGLQV-GGGVN-S-ENAMSYLDAGASHVIV 110 (262)
T ss_pred CCCHHHHHHHHHHCCCCEEEEE-----EC-CCCCcccHHHHHHHHh-CC-CCEEE-eCCcc-H-HHHHHHHHcCCCEEEE
Confidence 3689999999999999999988 33 2222222678888877 44 45542 23343 4 9999999999998866
Q ss_pred cccchHHHHHHhcCCCCCHHHHHHHHHHHHHhC-CCCceEEEeEE----------Eec-CCCHHHHHHHHHHHHHcCCcE
Q 017200 239 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYV-PAGTLTKTSIM----------LGC-GETPDQVVSTMEKVRAAGVDV 306 (375)
Q Consensus 239 nlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~-p~Gl~tkt~im----------vGl-GET~ee~~etl~~Lrelgvd~ 306 (375)
+=-. +.++.-+. +.++.+-+.+ |.-+.+.-+.- -|- -+|.-+..+.+..+.+.++..
T Consensus 111 gT~A-------v~~~~~~p----~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~g~~e 179 (262)
T PLN02446 111 TSYV-------FRDGQIDL----ERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLAAYCDE 179 (262)
T ss_pred chHH-------HhCCCCCH----HHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHHHhCCCE
Confidence 5100 11001111 2333333322 22233322221 122 235667788778888888887
Q ss_pred EeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccchhhhh
Q 017200 307 MTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRS 354 (375)
Q Consensus 307 v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrs 354 (375)
+-+..--+- ++. ..--++.+++++........+|| -|+|
T Consensus 180 ii~TdI~rD---Gtl-----~G~d~el~~~l~~~~~ipVIASG-Gv~s 218 (262)
T PLN02446 180 FLVHGVDVE---GKR-----LGIDEELVALLGEHSPIPVTYAG-GVRS 218 (262)
T ss_pred EEEEEEcCC---Ccc-----cCCCHHHHHHHHhhCCCCEEEEC-CCCC
Confidence 766422222 221 11125666666666666677777 4443
|
|
| >COG1856 Uncharacterized homolog of biotin synthetase [Function unknown] | Back alignment and domain information |
|---|
Probab=90.24 E-value=4.4 Score=38.74 Aligned_cols=110 Identities=19% Similarity=0.202 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHhC----CCcEEEeecCCCCCChHHHHHHHHcCccccccc--ccchHHHHHHhcCCCCCHHHHHHHHHH
Q 017200 193 GHFAQTVRKLKELK----PNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN--IETVEELQSAVRDHRANFKQSLDVLMM 266 (375)
Q Consensus 193 ~~~~~lir~Ik~~~----p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn--lEtv~rl~~~mr~r~~s~~~~l~vl~~ 266 (375)
+.|...++.|++.. |.+.|.+--+...++.+.++.|.+-.+|.+-.+ +-|.-.-+... +.-+.++.+++++.
T Consensus 136 ~dyl~~l~~L~e~~irvvpHitiGL~~gki~~e~kaIdiL~~~~~DalVl~vliPtpGtkm~~~--~pp~~eE~i~v~~~ 213 (275)
T COG1856 136 EDYLRSLLLLKENGIRVVPHITIGLDFGKIHGEFKAIDILVNYEPDALVLVVLIPTPGTKMGNS--PPPPVEEAIKVVKY 213 (275)
T ss_pred HHHHHHHHHHHHcCceeceeEEEEeccCcccchHHHHHHHhcCCCCeEEEEEEecCCchhccCC--CCcCHHHHHHHHHH
Confidence 34555566666543 444544433444446677888887777765333 33332112222 46789999999999
Q ss_pred HHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 017200 267 AKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 267 ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i 309 (375)
||+.+|. .+.-+-|=-.||.. ++.=+.+..+|+|.|++
T Consensus 214 AR~~f~~--pv~iGCmrP~Ge~r---vk~d~~av~~gVd~It~ 251 (275)
T COG1856 214 ARKKFPN--PVSIGCMRPRGEWR---VKLDKEAVLAGVDRITF 251 (275)
T ss_pred HHHhCCC--CeeEeecCcCchhH---HHHHHHHHHcCCceeec
Confidence 9999986 56666666667654 45556677899999998
|
|
| >COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.21 E-value=3.2 Score=40.84 Aligned_cols=99 Identities=12% Similarity=0.139 Sum_probs=63.5
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCC--CCCccc-HHHHHHHHHHHHHhCCC-cEEEe-ecCCCCCC----hHHHHH
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRD--DLADQG-SGHFAQTVRKLKELKPN-MLIEA-LVPDFRGN----NGCVRE 227 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~--dl~d~G-~~~~~~lir~Ik~~~p~-i~Ie~-l~pd~~g~----~e~l~~ 227 (375)
.+..++...++.+.+.|++.|++..||-+ +.+. + ..+-.++|+.||....+ ..|.+ +.|+.... .+.+..
T Consensus 89 ~n~~~i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~~-~~~~~s~dLv~lik~~~~~~f~i~~A~~Pe~h~~s~~~~~d~~~ 167 (291)
T COG0685 89 RNRIEIISILKGAAALGIRNILALRGDPPAGDKPG-GKDLYSVDLVELIKKMRGGIFDIGVAAYPEGHPESKDVKEDIKR 167 (291)
T ss_pred CCHHHHHHHHHHHHHhCCceEEEecCCCCCCCCCC-ccccCHHHHHHHHHHhcCCeEEEEEEeCCCCCccchhhHHHHHH
Confidence 46789999999999999999999999975 3332 2 34567888889877655 55553 56655322 223333
Q ss_pred HH---HcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 017200 228 VA---KSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKD 269 (375)
Q Consensus 228 L~---~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~ 269 (375)
++ ++|.|.+ .-++ -++.+.+.+..+.++.
T Consensus 168 lkrKv~aGAd~~----------iTQ~---~fd~e~~~~~~~~~~~ 199 (291)
T COG0685 168 LKRKVDAGADFF----------ITQF---FFDVEAFERFAERVRA 199 (291)
T ss_pred HHHHHhcchHHH----------HHHH---ccCHHHHHHHHHHHHh
Confidence 33 4565533 2222 2456666666667666
|
|
| >PRK02227 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.56 E-value=14 Score=35.50 Aligned_cols=169 Identities=14% Similarity=0.148 Sum_probs=101.5
Q ss_pred HHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCC-cEEEeecCCCCCCh----HHHHHHHHcCccccccc
Q 017200 165 VAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN-MLIEALVPDFRGNN----GCVREVAKSGLNVFAHN 239 (375)
Q Consensus 165 ~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~-i~Ie~l~pd~~g~~----e~l~~L~~aGldv~~hn 239 (375)
+|+...+.|.+-|-+==-.+.. .| ..+..+|++|++..+. ..|..-++|+...+ ..+..+..+|+|.+..+
T Consensus 12 EA~~Al~~GaDiIDvK~P~~Ga---LG-A~~p~vir~Iv~~~~~~~pvSAtiGD~p~~p~~~~~aa~~~a~~GvDyVKvG 87 (238)
T PRK02227 12 EALEALAGGADIIDVKNPKEGS---LG-ANFPWVIREIVAAVPGRKPVSATIGDVPYKPGTISLAALGAAATGADYVKVG 87 (238)
T ss_pred HHHHHHhcCCCEEEccCCCCCC---CC-CCCHHHHHHHHHHhCCCCCceeeccCCCCCchHHHHHHHHHHhhCCCEEEEc
Confidence 3445567788766332111111 13 2377889998887654 67788888874332 33556667899988776
Q ss_pred ccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCH----HHHHHHHHHHHHcCCcEEeeecCCCC
Q 017200 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETP----DQVVSTMEKVRAAGVDVMTFGQYMRP 315 (375)
Q Consensus 240 lEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~----ee~~etl~~Lrelgvd~v~i~qYl~P 315 (375)
+- ...++++.+++++..-+..+.--.-+.=+.+|+-+-. -.-.+.+..+.+.|++.+-+=.+.
T Consensus 88 l~-----------~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlDTa~-- 154 (238)
T PRK02227 88 LY-----------GGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLDTAI-- 154 (238)
T ss_pred CC-----------CCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCCCEEEEeccc--
Confidence 42 1234455555554432211110112344555664411 022356677788999988875442
Q ss_pred CCCCCCccccCCHHHHHHHHHHHHHhhhhhhccchh
Q 017200 316 SKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPM 351 (375)
Q Consensus 316 ~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~ 351 (375)
+.+..+.+.+..++...+-+.+++.|......|.|
T Consensus 155 -Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~~gLAGSL 189 (238)
T PRK02227 155 -KDGKSLFDHMDEEELAEFVAEARSHGLMSALAGSL 189 (238)
T ss_pred -CCCcchHhhCCHHHHHHHHHHHHHcccHhHhcccC
Confidence 44555667788999999999999999988877743
|
|
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=89.29 E-value=6.8 Score=36.47 Aligned_cols=131 Identities=14% Similarity=0.134 Sum_probs=75.3
Q ss_pred chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc
Q 017200 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (375)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn 239 (375)
.+|++.|+.+.+.|++++++. |.+....+ ...-.++++.+.+..+ +. +.......+.+.++.+.++|.|.+-.+
T Consensus 28 ~dp~~~a~~~~~~g~~~l~v~--dl~~~~~g-~~~~~~~i~~i~~~~~-~p--i~~ggGI~~~ed~~~~~~~Ga~~vvlg 101 (230)
T TIGR00007 28 DDPVEAAKKWEEEGAERIHVV--DLDGAKEG-GPVNLPVIKKIVRETG-VP--VQVGGGIRSLEDVEKLLDLGVDRVIIG 101 (230)
T ss_pred CCHHHHHHHHHHcCCCEEEEE--eCCccccC-CCCcHHHHHHHHHhcC-CC--EEEeCCcCCHHHHHHHHHcCCCEEEEC
Confidence 478889999999999999994 44433221 2223567777776542 22 333445557899999999999876433
Q ss_pred ccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEE------EecCC-CHHHHHHHHHHHHHcCCcEEeee
Q 017200 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIM------LGCGE-TPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 240 lEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~im------vGlGE-T~ee~~etl~~Lrelgvd~v~i~ 310 (375)
-+..+ +.+...+..+... ..-+.+.-++- -|.-| +..+..+.++.+.+.|++.+.+.
T Consensus 102 s~~l~-----------d~~~~~~~~~~~g---~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~ 165 (230)
T TIGR00007 102 TAAVE-----------NPDLVKELLKEYG---PERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYT 165 (230)
T ss_pred hHHhh-----------CHHHHHHHHHHhC---CCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEE
Confidence 11111 1122223333321 11133333322 22211 23466778888899999987764
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=89.25 E-value=9.3 Score=34.87 Aligned_cols=119 Identities=15% Similarity=0.183 Sum_probs=70.1
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEE----eecCCCCCChHHHHHHHHcC
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIE----ALVPDFRGNNGCVREVAKSG 232 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie----~l~pd~~g~~e~l~~L~~aG 232 (375)
.++++.++.++++ +-|++-|-++..... ..| .+.|+.|++.+|+..+- ++.|+ ...++.+.++|
T Consensus 9 ~~~~~a~~~~~~l-~~~v~~iev~~~l~~---~~g----~~~i~~l~~~~~~~~i~~d~k~~d~~----~~~~~~~~~~G 76 (206)
T TIGR03128 9 LDIEEALELAEKV-ADYVDIIEIGTPLIK---NEG----IEAVKEMKEAFPDRKVLADLKTMDAG----EYEAEQAFAAG 76 (206)
T ss_pred CCHHHHHHHHHHc-ccCeeEEEeCCHHHH---HhC----HHHHHHHHHHCCCCEEEEEEeeccch----HHHHHHHHHcC
Confidence 4678888999988 778776655322111 111 56788888887753332 22222 23589999999
Q ss_pred cccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-C-CCHHHHHHHHHHHHHcCCcEEeee
Q 017200 233 LNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-G-ETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 233 ldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-G-ET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
.|.+....++.+ ..-.++++.+++ .|+. +++++ + .| ..+.+..+.++++|++.++
T Consensus 77 ad~i~vh~~~~~-------------~~~~~~i~~~~~---~g~~----~~~~~~~~~t---~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 77 ADIVTVLGVADD-------------ATIKGAVKAAKK---HGKE----VQVDLINVKD---KVKRAKELKELGADYIGVH 133 (206)
T ss_pred CCEEEEeccCCH-------------HHHHHHHHHHHH---cCCE----EEEEecCCCC---hHHHHHHHHHcCCCEEEEc
Confidence 998865544321 222456777777 3543 33343 2 23 2233334466799999885
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >PRK08005 epimerase; Validated | Back alignment and domain information |
|---|
Probab=89.25 E-value=19 Score=33.77 Aligned_cols=116 Identities=13% Similarity=0.100 Sum_probs=74.6
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC-CcEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NMLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p-~i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
.|+..+.+.++++.+.|++.+++==-|..-.|...+. .++++.|++... .+.+++.+-+ ....++.+.++|+|.
T Consensus 10 ad~~~l~~el~~l~~~g~d~lHiDvMDG~FVPN~tfG--~~~i~~l~~~t~~~~DvHLMv~~---P~~~i~~~~~~gad~ 84 (210)
T PRK08005 10 ADPLRYAEALTALHDAPLGSLHLDIEDTSFINNITFG--MKTIQAVAQQTRHPLSFHLMVSS---PQRWLPWLAAIRPGW 84 (210)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccC--HHHHHHHHhcCCCCeEEEeccCC---HHHHHHHHHHhCCCE
Confidence 4566788899999999999998765554434432111 457777776431 1455555432 245789999999999
Q ss_pred ccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHH
Q 017200 236 FAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTM 296 (375)
Q Consensus 236 ~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl 296 (375)
+....|+.+. ..++++.+|+ .| .++++-+.-+-..+.+...+
T Consensus 85 It~H~Ea~~~--------------~~~~l~~Ik~---~G--~k~GlAlnP~Tp~~~i~~~l 126 (210)
T PRK08005 85 IFIHAESVQN--------------PSEILADIRA---IG--AKAGLALNPATPLLPYRYLA 126 (210)
T ss_pred EEEcccCccC--------------HHHHHHHHHH---cC--CcEEEEECCCCCHHHHHHHH
Confidence 9988885421 1246666777 45 46777777775555554443
|
|
| >cd00739 DHPS DHPS subgroup of Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=89.15 E-value=9.4 Score=36.83 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=49.3
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEee-eCCCCCc----ccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSV-DRDDLAD----QGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK 230 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsg-dr~dl~d----~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~ 230 (375)
.++++++++.|+...+.|.+.|-|=+. .+++... ...+.+..+|+.|++.. ++.|. +-.+ +.+.++.-.+
T Consensus 20 ~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~-~~plS--IDT~--~~~v~e~al~ 94 (257)
T cd00739 20 FLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL-DVLIS--VDTF--RAEVARAALE 94 (257)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCcEE--EeCC--CHHHHHHHHH
Confidence 478999999999999999999988543 2333221 11345556677777643 23332 2122 5677777777
Q ss_pred cCccccc
Q 017200 231 SGLNVFA 237 (375)
Q Consensus 231 aGldv~~ 237 (375)
.|.+.++
T Consensus 95 ~G~~iIN 101 (257)
T cd00739 95 AGADIIN 101 (257)
T ss_pred hCCCEEE
Confidence 7877765
|
DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. |
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=89.09 E-value=6.2 Score=41.12 Aligned_cols=130 Identities=22% Similarity=0.296 Sum_probs=81.8
Q ss_pred chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc
Q 017200 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (375)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn 239 (375)
++-.+.++++.+.|++-|+|..-++. .....+.|+.|++.+|++.|-+ ++.. +.+..+.+.++|+|.+..+
T Consensus 223 ~~~~~r~~~L~~aG~d~I~vd~a~g~------~~~~~~~i~~i~~~~~~~~vi~--G~v~-t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 223 EFDKERAEALVKAGVDVIVIDSSHGH------SIYVIDSIKEIKKTYPDLDIIA--GNVA-TAEQAKALIDAGADGLRVG 293 (450)
T ss_pred hhHHHHHHHHHHhCCCEEEEECCCCc------HhHHHHHHHHHHHhCCCCCEEE--EeCC-CHHHHHHHHHhCCCEEEEC
Confidence 35567788999999999999876532 3567899999999888765543 2222 6889999999999988432
Q ss_pred -----ccchHHHHHHhcCCCC-CHHHHHHHHHHHHHhCCCCceEEEeEEE-ecCCCHHHHHHHHHHHHHcCCcEEeeecC
Q 017200 240 -----IETVEELQSAVRDHRA-NFKQSLDVLMMAKDYVPAGTLTKTSIML-GCGETPDQVVSTMEKVRAAGVDVMTFGQY 312 (375)
Q Consensus 240 -----lEtv~rl~~~mr~r~~-s~~~~l~vl~~ak~~~p~Gl~tkt~imv-GlGET~ee~~etl~~Lrelgvd~v~i~qY 312 (375)
+.+.. .+.+.+. ...--.++.+.+++ .|++ +|. |=--|..|+...| .+|.+.+-+|..
T Consensus 294 ~g~G~~~~t~----~~~~~g~p~~~~i~~~~~~~~~---~~vp----viadGGi~~~~di~kAl----a~GA~~V~~G~~ 358 (450)
T TIGR01302 294 IGPGSICTTR----IVAGVGVPQITAVYDVAEYAAQ---SGIP----VIADGGIRYSGDIVKAL----AAGADAVMLGSL 358 (450)
T ss_pred CCCCcCCccc----eecCCCccHHHHHHHHHHHHhh---cCCe----EEEeCCCCCHHHHHHHH----HcCCCEEEECch
Confidence 22221 1111111 12222334444444 2344 333 1125788887776 569999988876
Q ss_pred C
Q 017200 313 M 313 (375)
Q Consensus 313 l 313 (375)
+
T Consensus 359 ~ 359 (450)
T TIGR01302 359 L 359 (450)
T ss_pred h
Confidence 6
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=89.06 E-value=7.9 Score=36.30 Aligned_cols=130 Identities=15% Similarity=0.200 Sum_probs=74.8
Q ss_pred chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc
Q 017200 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (375)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn 239 (375)
.++++.++.+.+.|++++++.--+.. ..+.....+.|+.|.+..+ +.+.+ -+... +.+.++.+.++|+|.+..+
T Consensus 32 ~~~~e~a~~~~~~G~~~l~i~dl~~~---~~~~~~~~~~i~~i~~~~~-~~l~v-~GGi~-~~~~~~~~~~~Ga~~v~iG 105 (241)
T PRK13585 32 GDPVEVAKRWVDAGAETLHLVDLDGA---FEGERKNAEAIEKIIEAVG-VPVQL-GGGIR-SAEDAASLLDLGVDRVILG 105 (241)
T ss_pred CCHHHHHHHHHHcCCCEEEEEechhh---hcCCcccHHHHHHHHHHcC-CcEEE-cCCcC-CHHHHHHHHHcCCCEEEEC
Confidence 46888899999999999987743321 1123345677777777653 33322 22232 6788999999999977554
Q ss_pred ccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC-CceEEEeE----E--Eec-CCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPA-GTLTKTSI----M--LGC-GETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 240 lEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~-Gl~tkt~i----m--vGl-GET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
-+..+ + .+.++.+.+.++. -+.+..++ + -|. .++..+.++..+.+.+.|++.+.+.
T Consensus 106 s~~~~-----------~----~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~ 169 (241)
T PRK13585 106 TAAVE-----------N----PEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILFT 169 (241)
T ss_pred hHHhh-----------C----hHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEE
Confidence 22211 0 1223333333221 12222221 1 233 3344467788888889999988775
|
|
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=88.81 E-value=6 Score=38.89 Aligned_cols=189 Identities=16% Similarity=0.219 Sum_probs=103.9
Q ss_pred CCcEEEEEeee---CCCCCcccHHHHHHHHHHHHHhCCCcEEEe-ecCCCCCC----hHHHHHHHHcCcccccccccchH
Q 017200 173 GLDYVVITSVD---RDDLADQGSGHFAQTVRKLKELKPNMLIEA-LVPDFRGN----NGCVREVAKSGLNVFAHNIETVE 244 (375)
Q Consensus 173 G~~eIvLTsgd---r~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~-l~pd~~g~----~e~l~~L~~aGldv~~hnlEtv~ 244 (375)
|++-+-+||.- .--+||+|.-.+.+++..++...+.+.+.+ ...|--++ ...++.+.++|+..+ ++| |
T Consensus 38 Gf~ai~~ss~~~a~s~G~pD~~~~~~~e~~~~~~~I~~a~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi--~iE--D 113 (285)
T TIGR02320 38 GFDGIWSSSLTDSTSRGVPDIEEASWTQRLDVVEFMFDVTTKPIILDGDTGGNFEHFRRLVRKLERRGVSAV--CIE--D 113 (285)
T ss_pred CcCEEEechHHHHHHCCCCCcCcCCHHHHHHHHHHHHhhcCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEE--EEe--c
Confidence 99888777642 234577654334444444443332222211 11111134 345788888886544 344 1
Q ss_pred HHHHHhcC--------CCCCHHHHHHHHHHHHHhCCC-CceE--EEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 245 ELQSAVRD--------HRANFKQSLDVLMMAKDYVPA-GTLT--KTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 245 rl~~~mr~--------r~~s~~~~l~vl~~ak~~~p~-Gl~t--kt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
..+++.|+ .-.+.++..+.|+.+++.... .+.+ .|+-.++ ++..+|.++-.+...+.|.|.+-+ .+.
T Consensus 114 q~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~-~~~~~eAi~Ra~ay~eAGAD~ifv-~~~ 191 (285)
T TIGR02320 114 KLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLIL-GKGMEDALKRAEAYAEAGADGIMI-HSR 191 (285)
T ss_pred cCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccc-cCCHHHHHHHHHHHHHcCCCEEEe-cCC
Confidence 22333221 124678899999998875211 1333 4444321 345788889999999999998877 332
Q ss_pred CCCC-----------C---CCCccccCC--H-HHHHHHHHHHHHhhhhhhccc-hhhhhhcchhHHHHHHHHhhhh
Q 017200 314 RPSK-----------R---HMPVSEYIT--P-EAFERYRALGMEMGFRYVASG-PMVRSSYKVVGWCYYLIFNYRS 371 (375)
Q Consensus 314 ~P~~-----------~---~~~v~~~v~--p-e~~~~l~~~a~~~gf~~~~sg-p~vrssy~a~~~~~~~~~~~~~ 371 (375)
.++. . ..|+.-..+ | -.+++|. ++||..+.-| -+.|+.|+|-+..++.+.+...
T Consensus 192 ~~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL~----~lG~~~v~~~~~~~~aa~~a~~~~~~~~~~~g~ 263 (285)
T TIGR02320 192 KKDPDEILEFARRFRNHYPRTPLVIVPTSYYTTPTDEFR----DAGISVVIYANHLLRAAYAAMQQVAERILEHGR 263 (285)
T ss_pred CCCHHHHHHHHHHhhhhCCCCCEEEecCCCCCCCHHHHH----HcCCCEEEEhHHHHHHHHHHHHHHHHHHHHcCC
Confidence 1111 0 123211010 1 1244443 5688887654 3569999999999998886554
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=88.81 E-value=9.8 Score=36.92 Aligned_cols=167 Identities=19% Similarity=0.250 Sum_probs=93.1
Q ss_pred CcchHHHHHHHHHhcCCcEEEEEeee--C----CCCCcccHHHHHHHHHHHHHhC--CCcEEEeecCCCCCChHHHHHHH
Q 017200 158 DPDEPTNVAEAIASWGLDYVVITSVD--R----DDLADQGSGHFAQTVRKLKELK--PNMLIEALVPDFRGNNGCVREVA 229 (375)
Q Consensus 158 d~eEi~~~a~al~~~G~~eIvLTsgd--r----~dl~d~G~~~~~~lir~Ik~~~--p~i~Ie~l~pd~~g~~e~l~~L~ 229 (375)
++++..+.|+.+.+.|++.|-|.-.- . +++. ...+.+.++++.+++.. | +.++ +.|+.....+.++.+.
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~-~~~~~~~eiv~~vr~~~~~P-v~vK-l~~~~~~~~~~a~~~~ 176 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG-TDPEAVAEIVKAVKKATDVP-VIVK-LTPNVTDIVEIARAAE 176 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc-CCHHHHHHHHHHHHhccCCC-EEEE-eCCCchhHHHHHHHHH
Confidence 37889999999999999988885431 1 1111 12466788999998764 3 4444 4565421235566788
Q ss_pred HcCcccccc-c--------ccchHHHH----HHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-C-CCHHHHHH
Q 017200 230 KSGLNVFAH-N--------IETVEELQ----SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-G-ETPDQVVS 294 (375)
Q Consensus 230 ~aGldv~~h-n--------lEtv~rl~----~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-G-ET~ee~~e 294 (375)
++|+|.+.. | .++..... .-+. ....+...++.++.+++.. ++ - ++|- | .|.+++.+
T Consensus 177 ~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~s-g~~~~~~~~~~i~~i~~~~--~i----p-ii~~GGI~~~~da~~ 248 (296)
T cd04740 177 EAGADGLTLINTLKGMAIDIETRKPILGNVTGGLS-GPAIKPIALRMVYQVYKAV--EI----P-IIGVGGIASGEDALE 248 (296)
T ss_pred HcCCCEEEEECCCcccccccccCceeecCCcceec-CcccchHHHHHHHHHHHhc--CC----C-EEEECCCCCHHHHHH
Confidence 899986531 1 11110000 0011 1222334677777777742 12 2 2233 2 57788887
Q ss_pred HHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 295 TMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 295 tl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
.| +.|.|.|-++.-+ +. ...+...-.+.+.++..+.||..+
T Consensus 249 ~l----~~GAd~V~igra~------l~-~p~~~~~i~~~l~~~~~~~g~~~~ 289 (296)
T cd04740 249 FL----MAGASAVQVGTAN------FV-DPEAFKEIIEGLEAYLDEEGIKSI 289 (296)
T ss_pred HH----HcCCCEEEEchhh------hc-ChHHHHHHHHHHHHHHHHcCCCCH
Confidence 77 3789999887321 11 111222334556666667777544
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=88.57 E-value=24 Score=33.88 Aligned_cols=168 Identities=15% Similarity=0.215 Sum_probs=102.4
Q ss_pred HHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCC-cEEEeecCCCCCChHHH----HHHHHcCccccccc
Q 017200 165 VAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN-MLIEALVPDFRGNNGCV----REVAKSGLNVFAHN 239 (375)
Q Consensus 165 ~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~-i~Ie~l~pd~~g~~e~l----~~L~~aGldv~~hn 239 (375)
+|..+.+.|.+-|-+=--.+.. .|+ .+..+|++|++..|+ ..+.+-++|+--.+..+ .....+|+|.+..+
T Consensus 12 EA~~a~~~gaDiID~K~P~~Ga---LGA-~~~~vi~~i~~~~~~~~pvSAtiGDlp~~p~~~~~aa~~~a~~GvdyvKvG 87 (235)
T PF04476_consen 12 EAEEALAGGADIIDLKNPAEGA---LGA-LFPWVIREIVAAVPGRKPVSATIGDLPMKPGTASLAALGAAATGVDYVKVG 87 (235)
T ss_pred HHHHHHhCCCCEEEccCCCCCC---CCC-CCHHHHHHHHHHcCCCCceEEEecCCCCCchHHHHHHHHHHhcCCCEEEEe
Confidence 4555667787777332111111 233 378889999887763 67888888774343333 23455788887765
Q ss_pred ccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCc-eEEEeEEEecCCCHH----HHHHHHHHHHHcCCcEEeeecCCC
Q 017200 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGT-LTKTSIMLGCGETPD----QVVSTMEKVRAAGVDVMTFGQYMR 314 (375)
Q Consensus 240 lEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl-~tkt~imvGlGET~e----e~~etl~~Lrelgvd~v~i~qYl~ 314 (375)
+- ...++++.++.++.+.+.... . .-+.=+-+|+..... +-.+....+.+.|++.+-+=.+.
T Consensus 88 l~-----------g~~~~~~a~e~l~~v~~av~~-~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDTa~- 154 (235)
T PF04476_consen 88 LF-----------GCKDYDEAIEALEAVVRAVKD-FDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDTAD- 154 (235)
T ss_pred cC-----------CCCCHHHHHHHHHHHHHHHhh-hCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEeccc-
Confidence 31 234566666666554332111 1 112335556644321 23466778889999988775332
Q ss_pred CCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccchh
Q 017200 315 PSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPM 351 (375)
Q Consensus 315 P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~ 351 (375)
+.+..+.+++.+++...+-+.+++.|......|.|
T Consensus 155 --Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~aLAGSL 189 (235)
T PF04476_consen 155 --KDGGSLFDHLSEEELAEFVAQARAHGLMCALAGSL 189 (235)
T ss_pred --CCCCchhhcCCHHHHHHHHHHHHHccchhhccccC
Confidence 34455667788999999999999999988888743
|
|
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=88.45 E-value=22 Score=33.54 Aligned_cols=112 Identities=17% Similarity=0.257 Sum_probs=70.4
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCC--cEEEeecCCCCCChHHHHHHHHcCcc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN--MLIEALVPDFRGNNGCVREVAKSGLN 234 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~--i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (375)
.|+..+.+.++.+.+.|++.+++==-|..-.|.-.+. .++++.|++..++ +.+++.+-+ ....++.++++|+|
T Consensus 9 ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~tfg--~~~i~~i~~~~~~~~~dvHLMv~~---p~~~i~~~~~~gad 83 (220)
T PRK08883 9 ADFARLGEDVEKVLAAGADVVHFDVMDNHYVPNLTFG--APICKALRDYGITAPIDVHLMVKP---VDRIIPDFAKAGAS 83 (220)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCcccCccccC--HHHHHHHHHhCCCCCEEEEeccCC---HHHHHHHHHHhCCC
Confidence 4666788889999999999998765554433431111 4577888764222 455655532 24578999999999
Q ss_pred cccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHH
Q 017200 235 VFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQV 292 (375)
Q Consensus 235 v~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~ 292 (375)
.+....|+.+. ..++++.+|+ .| .++++-+.-+=..+.+
T Consensus 84 ~i~~H~Ea~~~--------------~~~~l~~ik~---~g--~k~GlalnP~Tp~~~i 122 (220)
T PRK08883 84 MITFHVEASEH--------------VDRTLQLIKE---HG--CQAGVVLNPATPLHHL 122 (220)
T ss_pred EEEEcccCccc--------------HHHHHHHHHH---cC--CcEEEEeCCCCCHHHH
Confidence 99988886321 1244555555 35 4666666665333333
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=88.35 E-value=5 Score=42.22 Aligned_cols=133 Identities=20% Similarity=0.305 Sum_probs=89.5
Q ss_pred chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc
Q 017200 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (375)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn 239 (375)
++..+.++++.+.|++-|+|=.-+. -...+.++|+.||+.+|++.|-+ ++..+.+..+.|.++|+|.+..+
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a~g------~~~~~~~~i~~i~~~~~~~~vi~---g~~~t~~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTAHG------HQVKMISAIKAVRALDLGVPIVA---GNVVSAEGVRDLLEAGANIIKVG 294 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCCCC------CcHHHHHHHHHHHHHCCCCeEEE---eccCCHHHHHHHHHhCCCEEEEC
Confidence 5778899999999999998855442 14678999999999988876543 44447899999999999998644
Q ss_pred cc----chHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 240 IE----TVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 240 lE----tv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
+= +.-+.+.-+. .....--+++.+.+++. |+.+-++ |=--+..|+...| .+|.+.+.++.+|
T Consensus 295 ~g~Gs~~ttr~~~~~g--~~~~~a~~~~~~~~~~~---~~~viad---Ggi~~~~di~kal----a~GA~~vm~g~~~ 360 (475)
T TIGR01303 295 VGPGAMCTTRMMTGVG--RPQFSAVLECAAEARKL---GGHVWAD---GGVRHPRDVALAL----AAGASNVMVGSWF 360 (475)
T ss_pred CcCCccccCccccCCC--CchHHHHHHHHHHHHHc---CCcEEEe---CCCCCHHHHHHHH----HcCCCEEeechhh
Confidence 32 1113322222 22344456666666663 3432221 1136778887766 4899999998776
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=88.33 E-value=19 Score=34.12 Aligned_cols=116 Identities=14% Similarity=0.198 Sum_probs=75.0
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCC--cEEEeecCCCCCChHHHHHHHHcCcc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN--MLIEALVPDFRGNNGCVREVAKSGLN 234 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~--i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (375)
.|+-.+.+.++.+.+.|++++++==.|..-.|.-.+. .++++.|++..++ +.+++.+-+ ....++.+.++|+|
T Consensus 13 ad~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN~tfg--~~~i~~lr~~~~~~~~dvHLMv~~---P~~~i~~~~~~gad 87 (223)
T PRK08745 13 ADFARLGEEVDNVLKAGADWVHFDVMDNHYVPNLTIG--PMVCQALRKHGITAPIDVHLMVEP---VDRIVPDFADAGAT 87 (223)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcccC--HHHHHHHHhhCCCCCEEEEeccCC---HHHHHHHHHHhCCC
Confidence 4666888899999999999998766554433431111 4577888765222 455555532 24578999999999
Q ss_pred cccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHH
Q 017200 235 VFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTM 296 (375)
Q Consensus 235 v~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl 296 (375)
.+....|..+. -.++++.+|+ .| .++++-+.-+-..+.+...+
T Consensus 88 ~I~~H~Ea~~~--------------~~~~l~~Ir~---~g--~k~GlalnP~T~~~~i~~~l 130 (223)
T PRK08745 88 TISFHPEASRH--------------VHRTIQLIKS---HG--CQAGLVLNPATPVDILDWVL 130 (223)
T ss_pred EEEEcccCccc--------------HHHHHHHHHH---CC--CceeEEeCCCCCHHHHHHHH
Confidence 99988885321 2355666677 45 47777777764444444443
|
|
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=88.32 E-value=16 Score=35.13 Aligned_cols=130 Identities=11% Similarity=0.125 Sum_probs=78.1
Q ss_pred chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc
Q 017200 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (375)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn 239 (375)
.+|++.|+.+.+.|++++++|=.++..-. ...-.++++.|.+.. .+.|.+- +... +.+.++.+.++|++.+-.|
T Consensus 30 ~dp~~~a~~~~~~g~~~l~i~Dl~~~~~~---~~~n~~~i~~i~~~~-~~pv~~g-GGi~-s~~d~~~l~~~G~~~vvig 103 (258)
T PRK01033 30 GDPINAVRIFNEKEVDELIVLDIDASKRG---SEPNYELIENLASEC-FMPLCYG-GGIK-TLEQAKKIFSLGVEKVSIN 103 (258)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCCcCC---CcccHHHHHHHHHhC-CCCEEEC-CCCC-CHHHHHHHHHCCCCEEEEC
Confidence 47889999999999999999977654211 122367788887653 3444322 2222 6778888889998877665
Q ss_pred ccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCC-CCceEEEeEEEec------------CCCHHHHHHHHHHHHHcCCcE
Q 017200 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVP-AGTLTKTSIMLGC------------GETPDQVVSTMEKVRAAGVDV 306 (375)
Q Consensus 240 lEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p-~Gl~tkt~imvGl------------GET~ee~~etl~~Lrelgvd~ 306 (375)
-++.+ . .+.++.+.+.++ .-+.+.-++=-|. -.+..+..+.++.+.+.+++.
T Consensus 104 s~~~~----~-----------~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ 168 (258)
T PRK01033 104 TAALE----D-----------PDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGE 168 (258)
T ss_pred hHHhc----C-----------HHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCE
Confidence 22211 0 123333333222 1133333332221 135556788888999999998
Q ss_pred Eeee
Q 017200 307 MTFG 310 (375)
Q Consensus 307 v~i~ 310 (375)
+.+.
T Consensus 169 ii~~ 172 (258)
T PRK01033 169 ILLN 172 (258)
T ss_pred EEEE
Confidence 8775
|
|
| >cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll | Back alignment and domain information |
|---|
Probab=88.26 E-value=5.1 Score=39.90 Aligned_cols=56 Identities=21% Similarity=0.325 Sum_probs=43.0
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCc-c-c------HHHHHHHHHHHHHhCCCcEE
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD-Q-G------SGHFAQTVRKLKELKPNMLI 211 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d-~-G------~~~~~~lir~Ik~~~p~i~I 211 (375)
.++.+.+++.++.+.+.|++.|.|=|+......| . | -.-+...|+.||+.+|++.|
T Consensus 47 r~s~d~l~~~~~~~~~~Gi~~v~LFgv~~~~~Kd~~~gs~a~~~~g~v~~air~iK~~~pdl~v 110 (320)
T cd04824 47 RYGVNRLEEFLRPLVAKGLRSVILFGVPLKPGKDDRSGSAADDEDGPVIQAIKLIREEFPELLI 110 (320)
T ss_pred eeCHHHHHHHHHHHHHCCCCEEEEeCCCccccCCcCccccccCCCChHHHHHHHHHHhCCCcEE
Confidence 3789999999999999999999999984222221 1 1 12367899999999999765
|
This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they |
| >PRK09283 delta-aminolevulinic acid dehydratase; Validated | Back alignment and domain information |
|---|
Probab=88.26 E-value=5.2 Score=39.96 Aligned_cols=53 Identities=25% Similarity=0.374 Sum_probs=42.3
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcc-c------HHHHHHHHHHHHHhCCCcEE
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQ-G------SGHFAQTVRKLKELKPNMLI 211 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~-G------~~~~~~lir~Ik~~~p~i~I 211 (375)
++.+++++.++.+.+.|++.|.|=|+. +..|. | -.-+...|+.||+.+|++.|
T Consensus 56 ~s~d~l~~~v~~~~~~Gi~av~LFgv~--~~Kd~~gs~A~~~~g~v~rair~iK~~~p~l~v 115 (323)
T PRK09283 56 LSIDLLVKEAEEAVELGIPAVALFGVP--ELKDEDGSEAYNPDGLVQRAIRAIKKAFPELGV 115 (323)
T ss_pred eCHHHHHHHHHHHHHCCCCEEEEeCcC--CCCCcccccccCCCCHHHHHHHHHHHhCCCcEE
Confidence 789999999999999999999999982 22221 1 12478899999999999765
|
|
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.20 E-value=3.6 Score=40.07 Aligned_cols=148 Identities=18% Similarity=0.302 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhCCCcEEEeec---CCCCCChHHHHHHHHcCcccccccccch---------H-HHHHHhcCCCCCHHHHH
Q 017200 195 FAQTVRKLKELKPNMLIEALV---PDFRGNNGCVREVAKSGLNVFAHNIETV---------E-ELQSAVRDHRANFKQSL 261 (375)
Q Consensus 195 ~~~lir~Ik~~~p~i~Ie~l~---pd~~g~~e~l~~L~~aGldv~~hnlEtv---------~-rl~~~mr~r~~s~~~~l 261 (375)
+.+.++++++..-...|--++ |+.....+.++.|.++|+|.+..++-.+ . ...+.++ .+.+.++.+
T Consensus 4 ~~~~F~~l~~~~~~a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~-~g~t~~~~l 82 (265)
T COG0159 4 LDQKFAQLKAENRGALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALA-AGVTLEDTL 82 (265)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHH-CCCCHHHHH
Confidence 445566666554334444333 3332246667777888888877775322 1 2234455 588999999
Q ss_pred HHHHHHHHhC---CCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCC----------CCCCCccccCCH
Q 017200 262 DVLMMAKDYV---PAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPS----------KRHMPVSEYITP 328 (375)
Q Consensus 262 ~vl~~ak~~~---p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~----------~~~~~v~~~v~p 328 (375)
++++.+++.. |.++.+-.+.++=.| +...++.+++.|+|-+-+-. +.|- ..++...-.+.|
T Consensus 83 el~~~~r~~~~~~Pivlm~Y~Npi~~~G-----ie~F~~~~~~~GvdGlivpD-LP~ee~~~~~~~~~~~gi~~I~lvaP 156 (265)
T COG0159 83 ELVEEIRAKGVKVPIVLMTYYNPIFNYG-----IEKFLRRAKEAGVDGLLVPD-LPPEESDELLKAAEKHGIDPIFLVAP 156 (265)
T ss_pred HHHHHHHhcCCCCCEEEEEeccHHHHhh-----HHHHHHHHHHcCCCEEEeCC-CChHHHHHHHHHHHHcCCcEEEEeCC
Confidence 9999999642 222222333332223 34467788889998776622 2220 012332223333
Q ss_pred H-HHHHHHHHHHH-hhhhhhccc
Q 017200 329 E-AFERYRALGME-MGFRYVASG 349 (375)
Q Consensus 329 e-~~~~l~~~a~~-~gf~~~~sg 349 (375)
. ..++++.++.. .||.|..|=
T Consensus 157 tt~~~rl~~i~~~a~GFiY~vs~ 179 (265)
T COG0159 157 TTPDERLKKIAEAASGFIYYVSR 179 (265)
T ss_pred CCCHHHHHHHHHhCCCcEEEEec
Confidence 2 24556666554 599988654
|
|
| >TIGR01496 DHPS dihydropteroate synthase | Back alignment and domain information |
|---|
Probab=88.00 E-value=12 Score=36.14 Aligned_cols=78 Identities=13% Similarity=0.193 Sum_probs=51.0
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEee-eCCCCCcc----cHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSV-DRDDLADQ----GSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK 230 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsg-dr~dl~d~----G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~ 230 (375)
..+++++++.|++..+.|.+.|-|=+. .+++.... -.+.+..+|+.+++.. ++.|.+= .+ +.+.++.-.+
T Consensus 19 ~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~-~~plsiD--T~--~~~vi~~al~ 93 (257)
T TIGR01496 19 FLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQP-DVPISVD--TY--RAEVARAALE 93 (257)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeEEEe--CC--CHHHHHHHHH
Confidence 368899999999999999999999322 23332210 1234667777776543 3333221 12 5778888878
Q ss_pred cCcccccc
Q 017200 231 SGLNVFAH 238 (375)
Q Consensus 231 aGldv~~h 238 (375)
+|.+.+++
T Consensus 94 ~G~~iINs 101 (257)
T TIGR01496 94 AGADIIND 101 (257)
T ss_pred cCCCEEEE
Confidence 89988876
|
This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284. |
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=87.99 E-value=1.8 Score=43.85 Aligned_cols=135 Identities=21% Similarity=0.314 Sum_probs=85.0
Q ss_pred chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc
Q 017200 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (375)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn 239 (375)
++-.+.++++.+.|++.|+|-+-+.. ..+..+.++.||+.+|++.|- .++. .+.+..+.|.++|+|.+-.+
T Consensus 107 ~~~~er~~~L~~agvD~ivID~a~g~------s~~~~~~ik~ik~~~~~~~vi--aGNV-~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 107 DDDFERAEALVEAGVDVIVIDSAHGH------SEHVIDMIKKIKKKFPDVPVI--AGNV-VTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp TCHHHHHHHHHHTT-SEEEEE-SSTT------SHHHHHHHHHHHHHSTTSEEE--EEEE--SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHHHHHcCCCEEEccccCcc------HHHHHHHHHHHHHhCCCceEE--eccc-CCHHHHHHHHHcCCCEEEEe
Confidence 45677888899999999998765432 578999999999999976553 3332 26889999999999988666
Q ss_pred cc-chHHHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 240 IE-TVEELQSAVRD-HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 240 lE-tv~rl~~~mr~-r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
+= .+--..+.+.. ......-..++-+.+++. |+++-++- | --+.-|+...| ..|-|.|-+|.+|
T Consensus 178 iGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~---~v~iIADG--G-i~~sGDi~KAl----a~GAd~VMlG~ll 243 (352)
T PF00478_consen 178 IGPGSICTTREVTGVGVPQLTAVYECAEAARDY---GVPIIADG--G-IRTSGDIVKAL----AAGADAVMLGSLL 243 (352)
T ss_dssp SSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCT---TSEEEEES--S--SSHHHHHHHH----HTT-SEEEESTTT
T ss_pred ccCCcccccccccccCCcHHHHHHHHHHHhhhc---cCceeecC--C-cCcccceeeee----eecccceeechhh
Confidence 43 11111222221 122344445666666653 45554443 1 15777777666 5788988888776
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=87.83 E-value=5.7 Score=38.01 Aligned_cols=162 Identities=20% Similarity=0.310 Sum_probs=98.7
Q ss_pred CCCCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCc-EEEeecCCCCC-----ChHHHH
Q 017200 153 APPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM-LIEALVPDFRG-----NNGCVR 226 (375)
Q Consensus 153 ~~~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i-~Ie~l~pd~~g-----~~e~l~ 226 (375)
+..+++|..+...+..++..|++||-+-=-...+. +...+.+..+++.++...++. .|-++..|+.. ..+..+
T Consensus 60 GDlp~~p~~~~~aa~~~a~~GvdyvKvGl~g~~~~-~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~ 138 (235)
T PF04476_consen 60 GDLPMKPGTASLAALGAAATGVDYVKVGLFGCKDY-DEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPE 138 (235)
T ss_pred cCCCCCchHHHHHHHHHHhcCCCEEEEecCCCCCH-HHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHH
Confidence 34566777777777777888999997532111111 112344555667777655554 45567677631 245667
Q ss_pred HHHHcCcccccccccchH----HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHH
Q 017200 227 EVAKSGLNVFAHNIETVE----ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRA 301 (375)
Q Consensus 227 ~L~~aGldv~~hnlEtv~----rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~ee~~etl~~Lre 301 (375)
..+++|.+. ..++|.. .++..| +.++--+.++.+|+ .| +|.|| |-= ..+.+..|+.
T Consensus 139 ~a~~aG~~g--vMlDTa~Kdg~~L~d~~-----~~~~L~~Fv~~ar~---~g------L~~aLAGSL---~~~di~~L~~ 199 (235)
T PF04476_consen 139 IAAEAGFDG--VMLDTADKDGGSLFDHL-----SEEELAEFVAQARA---HG------LMCALAGSL---RFEDIPRLKR 199 (235)
T ss_pred HHHHcCCCE--EEEecccCCCCchhhcC-----CHHHHHHHHHHHHH---cc------chhhccccC---ChhHHHHHHh
Confidence 778999653 3577753 555544 46777778888887 44 56777 532 3456777888
Q ss_pred cCCcEEeeecCCCCC-CCCCCccccCCHHHHHHHHHH
Q 017200 302 AGVDVMTFGQYMRPS-KRHMPVSEYITPEAFERYRAL 337 (375)
Q Consensus 302 lgvd~v~i~qYl~P~-~~~~~v~~~v~pe~~~~l~~~ 337 (375)
+++|++.|---+--. .+.. ..+.|+....|++.
T Consensus 200 l~pD~lGfRGAvC~ggdR~~---G~id~~~V~~lr~~ 233 (235)
T PF04476_consen 200 LGPDILGFRGAVCGGGDRRA---GRIDPELVAALRAL 233 (235)
T ss_pred cCCCEEEechhhCCCCCcCc---cccCHHHHHHHHHh
Confidence 999999984222222 1111 13568888877754
|
|
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=87.77 E-value=4.5 Score=39.07 Aligned_cols=78 Identities=12% Similarity=0.125 Sum_probs=55.0
Q ss_pred hHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHH
Q 017200 222 NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVR 300 (375)
Q Consensus 222 ~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~ee~~etl~~Lr 300 (375)
.+.++.+.+.|++.+-.+-.+.+- ..-+.+++.++++.+.+.... ...+|+|. +.+-+|.++..+..+
T Consensus 24 ~~~i~~l~~~Gv~gl~v~GstGE~-------~~lt~~Er~~l~~~~~~~~~~----~~~vi~gv~~~~~~~~~~~a~~a~ 92 (284)
T cd00950 24 ERLIEFQIENGTDGLVVCGTTGES-------PTLSDEEHEAVIEAVVEAVNG----RVPVIAGTGSNNTAEAIELTKRAE 92 (284)
T ss_pred HHHHHHHHHcCCCEEEECCCCcch-------hhCCHHHHHHHHHHHHHHhCC----CCcEEeccCCccHHHHHHHHHHHH
Confidence 456677778888765433222221 134678888999888885432 45688999 578999999999999
Q ss_pred HcCCcEEeee
Q 017200 301 AAGVDVMTFG 310 (375)
Q Consensus 301 elgvd~v~i~ 310 (375)
++|+|.+-+.
T Consensus 93 ~~G~d~v~~~ 102 (284)
T cd00950 93 KAGADAALVV 102 (284)
T ss_pred HcCCCEEEEc
Confidence 9999976663
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=87.69 E-value=18 Score=31.91 Aligned_cols=131 Identities=13% Similarity=0.156 Sum_probs=78.1
Q ss_pred CcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCC--cEEE--eecCC----CCCChHHHHHHH
Q 017200 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN--MLIE--ALVPD----FRGNNGCVREVA 229 (375)
Q Consensus 158 d~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~--i~Ie--~l~pd----~~g~~e~l~~L~ 229 (375)
|.+.+.+.++.+.+.|++-|+++| ++++.+.+..++ +.+- +-.+. .....+.++...
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g---------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~ 75 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP---------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAI 75 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH---------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHH
Confidence 788899999999999999998886 334444433332 4332 22222 111346677888
Q ss_pred HcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 017200 230 KSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 230 ~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i 309 (375)
++|+|.+... .-.|... ..+.+.-++.++.+.+..+.++++-...+-+.--+.+++.+..+.+.+.+++.|..
T Consensus 76 ~~Gad~i~v~----~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~ 148 (201)
T cd00945 76 DLGADEIDVV----INIGSLK---EGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKT 148 (201)
T ss_pred HcCCCEEEEe----ccHHHHh---CCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEe
Confidence 8898865431 1112111 11245555555555553212466555555443346788888888888999999887
Q ss_pred e
Q 017200 310 G 310 (375)
Q Consensus 310 ~ 310 (375)
+
T Consensus 149 ~ 149 (201)
T cd00945 149 S 149 (201)
T ss_pred C
Confidence 4
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=87.65 E-value=3 Score=39.70 Aligned_cols=94 Identities=19% Similarity=0.309 Sum_probs=56.2
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCccc---------------HHHHHHHHHHHHHhCCCcEEEee---cCCC
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQG---------------SGHFAQTVRKLKELKPNMLIEAL---VPDF 218 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G---------------~~~~~~lir~Ik~~~p~i~Ie~l---~pd~ 218 (375)
.+.+...+.++++.+.|++.+.|-=--.|-..||. .....+.++.+++.. ++.+.++ .|-+
T Consensus 11 P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~-~~pv~lm~y~n~~~ 89 (242)
T cd04724 11 PDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN-TIPIVLMGYYNPIL 89 (242)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC-CCCEEEEEecCHHH
Confidence 35678899999999999999987621111122321 125677888888653 2333332 2322
Q ss_pred C-CChHHHHHHHHcCcccccc---cccchHHHHHHhc
Q 017200 219 R-GNNGCVREVAKSGLNVFAH---NIETVEELQSAVR 251 (375)
Q Consensus 219 ~-g~~e~l~~L~~aGldv~~h---nlEtv~rl~~~mr 251 (375)
. |-...++.++++|+|.+-. ..|...++.+.++
T Consensus 90 ~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~ 126 (242)
T cd04724 90 QYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAK 126 (242)
T ss_pred HhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHH
Confidence 1 2367789999999996654 2343344444443
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=87.64 E-value=5 Score=39.20 Aligned_cols=92 Identities=16% Similarity=0.141 Sum_probs=61.7
Q ss_pred CCcEEEeecCCC-CC--C----hHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEE
Q 017200 207 PNMLIEALVPDF-RG--N----NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKT 279 (375)
Q Consensus 207 p~i~Ie~l~pd~-~g--~----~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt 279 (375)
.++..-.++|-- .| | ...++.+.+.|+|.+-.+=.|.+- ..-+.+++.++++.+.+.... +.
T Consensus 7 ~Gi~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~-------~~Lt~eEr~~v~~~~~~~~~g----~~ 75 (296)
T TIGR03249 7 SGLLSFPVTPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEF-------FSLTPAEYEQVVEIAVSTAKG----KV 75 (296)
T ss_pred CceEEeeeCCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCc-------ccCCHHHHHHHHHHHHHHhCC----CC
Confidence 455566666621 11 2 456677778888865332222221 245678999999988885432 45
Q ss_pred eEEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 017200 280 SIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 280 ~imvGlGET~ee~~etl~~Lrelgvd~v~i 309 (375)
.+|+|.|.+-+|.++..+..+++|+|.+-+
T Consensus 76 pvi~gv~~~t~~ai~~a~~a~~~Gadav~~ 105 (296)
T TIGR03249 76 PVYTGVGGNTSDAIEIARLAEKAGADGYLL 105 (296)
T ss_pred cEEEecCccHHHHHHHHHHHHHhCCCEEEE
Confidence 688888778889999999999999987655
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >PRK11613 folP dihydropteroate synthase; Provisional | Back alignment and domain information |
|---|
Probab=87.52 E-value=13 Score=36.46 Aligned_cols=139 Identities=12% Similarity=0.127 Sum_probs=79.1
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEee-eCCCCCcc----cHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSV-DRDDLADQ----GSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK 230 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsg-dr~dl~d~----G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~ 230 (375)
..+++++++.|+++.+.|.+-|-|=|. .++....- -.+.+..+|+.|++.. ++.| ++-.+ +.+.++.-.+
T Consensus 34 ~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~-~~~I--SIDT~--~~~va~~AL~ 108 (282)
T PRK11613 34 HNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF-EVWI--SVDTS--KPEVIRESAK 108 (282)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeE--EEECC--CHHHHHHHHH
Confidence 368999999999999999998887665 34443211 1234556777777543 3333 22223 5677787778
Q ss_pred cCccccccc--ccchHHHHHHh----------cCC--------CCCH--------HHHHHHHHHHHHhCCCCc---eEEE
Q 017200 231 SGLNVFAHN--IETVEELQSAV----------RDH--------RANF--------KQSLDVLMMAKDYVPAGT---LTKT 279 (375)
Q Consensus 231 aGldv~~hn--lEtv~rl~~~m----------r~r--------~~s~--------~~~l~vl~~ak~~~p~Gl---~tkt 279 (375)
+|+|.+|-- +. .+++++.+ +.+ ...| +..-+.++.+.+ .|+ .+--
T Consensus 109 ~GadiINDI~g~~-d~~~~~~~a~~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~---~GI~~~~Iil 184 (282)
T PRK11613 109 AGAHIINDIRSLS-EPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEA---AGIAKEKLLL 184 (282)
T ss_pred cCCCEEEECCCCC-CHHHHHHHHHcCCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHH---cCCChhhEEE
Confidence 888877321 11 12222211 100 1111 122344455555 465 3344
Q ss_pred eEEEecCCCHHHHHHHHHHHHHcC
Q 017200 280 SIMLGCGETPDQVVSTMEKVRAAG 303 (375)
Q Consensus 280 ~imvGlGET~ee~~etl~~Lrelg 303 (375)
+--+|||.|.++=++.|+.+..+.
T Consensus 185 DPGiGF~k~~~~n~~ll~~l~~l~ 208 (282)
T PRK11613 185 DPGFGFGKNLSHNYQLLARLAEFH 208 (282)
T ss_pred eCCCCcCCCHHHHHHHHHHHHHHH
Confidence 444699999988777777665543
|
|
| >PRK02227 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.45 E-value=9.2 Score=36.70 Aligned_cols=162 Identities=18% Similarity=0.223 Sum_probs=98.4
Q ss_pred CCCCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCc-EEEeecCCCC-----CChHHHH
Q 017200 153 APPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM-LIEALVPDFR-----GNNGCVR 226 (375)
Q Consensus 153 ~~~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i-~Ie~l~pd~~-----g~~e~l~ 226 (375)
+..+..+.++...+..+...|++||-+==-.-.+. +.-.+.+..+++.++...++. .|-++..|+. ...+.++
T Consensus 60 GD~p~~p~~~~~aa~~~a~~GvDyVKvGl~~~~~~-~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~ 138 (238)
T PRK02227 60 GDVPYKPGTISLAALGAAATGADYVKVGLYGGKTA-EEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPA 138 (238)
T ss_pred cCCCCCchHHHHHHHHHHhhCCCEEEEcCCCCCcH-HHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHH
Confidence 34566778899999999999999997531111111 001233444456666555554 4555666643 2356777
Q ss_pred HHHHcCcccccccccchH----HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHH
Q 017200 227 EVAKSGLNVFAHNIETVE----ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRA 301 (375)
Q Consensus 227 ~L~~aGldv~~hnlEtv~----rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~ee~~etl~~Lre 301 (375)
..+++|.+.. .++|.. .+|..| +.++--+.++.+|+ .| +|.|| |-= ..+.+..|+.
T Consensus 139 ~a~~aGf~g~--MlDTa~Kdg~~Lfd~l-----~~~~L~~Fv~~ar~---~G------l~~gLAGSL---~~~dip~L~~ 199 (238)
T PRK02227 139 IAADAGFDGA--MLDTAIKDGKSLFDHM-----DEEELAEFVAEARS---HG------LMSALAGSL---KFEDIPALKR 199 (238)
T ss_pred HHHHcCCCEE--EEecccCCCcchHhhC-----CHHHHHHHHHHHHH---cc------cHhHhcccC---chhhHHHHHh
Confidence 8888986643 467753 566554 46777777888887 44 56677 532 3456777899
Q ss_pred cCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHH
Q 017200 302 AGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRAL 337 (375)
Q Consensus 302 lgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~ 337 (375)
+++|++.|---+--... -...+.|+....|++.
T Consensus 200 l~pD~lGfRgavC~g~d---R~~~id~~~V~~~~~~ 232 (238)
T PRK02227 200 LGPDILGVRGAVCGGGD---RTGRIDPELVAELREA 232 (238)
T ss_pred cCCCEEEechhccCCCC---cccccCHHHHHHHHHH
Confidence 99999998422221111 1123568887777654
|
|
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=87.44 E-value=12 Score=36.54 Aligned_cols=115 Identities=15% Similarity=0.214 Sum_probs=63.7
Q ss_pred CCcccHHHHHHHHHHHHHhCCC-cEEEeecCCCCCChHHHHHHHHcC--cccccccccchHHHHHHhcC--CCCCHHHHH
Q 017200 187 LADQGSGHFAQTVRKLKELKPN-MLIEALVPDFRGNNGCVREVAKSG--LNVFAHNIETVEELQSAVRD--HRANFKQSL 261 (375)
Q Consensus 187 l~d~G~~~~~~lir~Ik~~~p~-i~Ie~l~pd~~g~~e~l~~L~~aG--ldv~~hnlEtv~rl~~~mr~--r~~s~~~~l 261 (375)
+...|.+.+.+.++..+...+. +.+.+.-.+...-.+..+.+.+++ .|.+..|+-.-.. +. ++ -..+.+...
T Consensus 70 l~~~g~~~~~~~~~~~~~~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~--~~-~g~~l~~~~~~~~ 146 (300)
T TIGR01037 70 LQNPGVEAFLEELKPVREEFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHV--KG-GGIAIGQDPELSA 146 (300)
T ss_pred CCCcCHHHHHHHHHHHhccCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCC--CC-CccccccCHHHHH
Confidence 3333566777766655444321 233322111100134456666653 7877777543221 00 10 124567888
Q ss_pred HHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 262 DVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 262 ~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
++++.+++....-+.+|. .-+.+|..+..+.+.+.|+|.+++.
T Consensus 147 eiv~~vr~~~~~pv~vKi------~~~~~~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 147 DVVKAVKDKTDVPVFAKL------SPNVTDITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred HHHHHHHHhcCCCEEEEC------CCChhhHHHHHHHHHHcCCCEEEEE
Confidence 889998885311122332 2356788899999999999999875
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=87.43 E-value=8.2 Score=36.47 Aligned_cols=128 Identities=15% Similarity=0.074 Sum_probs=72.6
Q ss_pred cchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccc
Q 017200 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (375)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~h 238 (375)
..+|++.|+.+.+.|+++++|.=-+.. . |...-.++|+.|.+..+ +.+.+- +.. .+.|.++.+.++|.+.+-.
T Consensus 34 ~~dp~~~a~~~~~~g~~~l~i~DLd~~--~--~~~~n~~~i~~i~~~~~-~~v~vg-GGi-r~~edv~~~l~~Ga~~vii 106 (233)
T cd04723 34 TSDPLDVARAYKELGFRGLYIADLDAI--M--GRGDNDEAIRELAAAWP-LGLWVD-GGI-RSLENAQEWLKRGASRVIV 106 (233)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEeCccc--c--CCCccHHHHHHHHHhCC-CCEEEe-cCc-CCHHHHHHHHHcCCCeEEE
Confidence 458999999999999999998844321 1 22234677888876532 333321 222 2678999999999887655
Q ss_pred cccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC-CceEEEeEEEec---CCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 239 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPA-GTLTKTSIMLGC---GETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 239 nlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~-Gl~tkt~imvGl---GET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
+-++.+ . +.++.+-+.++. -+.+.-++-=|- -++..+..+.++.+.+. ++.+.+.
T Consensus 107 gt~~~~--------------~--~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~ 165 (233)
T cd04723 107 GTETLP--------------S--DDDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELLRRLAKW-PEELIVL 165 (233)
T ss_pred cceecc--------------c--hHHHHHHHhcCCCCeEEEEeccCCeeccccCcCCHHHHHHHHHHh-CCeEEEE
Confidence 433322 1 233333333322 123333332120 12444566666666777 7766664
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.37 E-value=6.6 Score=41.38 Aligned_cols=133 Identities=17% Similarity=0.349 Sum_probs=85.3
Q ss_pred chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc
Q 017200 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (375)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn 239 (375)
+++.+.++++.+.|++-|+|-.-++. .....++|+.||+.+|++.| +-++.. +.|..+.+.++|.|.+..+
T Consensus 226 ~~~~~~a~~Lv~aGvd~i~~D~a~~~------~~~~~~~i~~ik~~~p~~~v--~agnv~-t~~~a~~l~~aGad~v~vg 296 (479)
T PRK07807 226 GDVAAKARALLEAGVDVLVVDTAHGH------QEKMLEALRAVRALDPGVPI--VAGNVV-TAEGTRDLVEAGADIVKVG 296 (479)
T ss_pred hhHHHHHHHHHHhCCCEEEEeccCCc------cHHHHHHHHHHHHHCCCCeE--EeeccC-CHHHHHHHHHcCCCEEEEC
Confidence 56788999999999999988655543 35689999999999998655 333432 6788999999999998755
Q ss_pred ccc----hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 240 IET----VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 240 lEt----v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
+=+ .-+.+--+. ...+.-..++.+.+++ .|+++ |.=|---+..|+...|. +|.+.+-+|..|
T Consensus 297 ig~gsictt~~~~~~~--~p~~~av~~~~~~~~~---~~~~v---ia~ggi~~~~~~~~al~----~ga~~v~~g~~~ 362 (479)
T PRK07807 297 VGPGAMCTTRMMTGVG--RPQFSAVLECAAAARE---LGAHV---WADGGVRHPRDVALALA----AGASNVMIGSWF 362 (479)
T ss_pred ccCCcccccccccCCc--hhHHHHHHHHHHHHHh---cCCcE---EecCCCCCHHHHHHHHH----cCCCeeeccHhh
Confidence 432 112222222 1223333444444444 23332 22233467788877764 688888787665
|
|
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=87.37 E-value=17 Score=36.22 Aligned_cols=162 Identities=18% Similarity=0.195 Sum_probs=84.7
Q ss_pred ccHHHHHHHHHHHHHhCCCcEEEeec-C-CCCCChHHHHHHHHcCcccccccccchHHHHHHhcCCCCCH-HHHHHHHHH
Q 017200 190 QGSGHFAQTVRKLKELKPNMLIEALV-P-DFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANF-KQSLDVLMM 266 (375)
Q Consensus 190 ~G~~~~~~lir~Ik~~~p~i~Ie~l~-p-d~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~-~~~l~vl~~ 266 (375)
.|.+.+.+.++.+++.. ++.|-+.+ + +...-.+.++.+.++|.|.+..|+-..+. ....+ +... +.++++++.
T Consensus 84 ~g~d~~~~~i~~~~~~~-~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~-~~~~~--g~~~~~~~~eil~~ 159 (334)
T PRK07565 84 VGPEEYLELIRRAKEAV-DIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPT-DPDIS--GAEVEQRYLDILRA 159 (334)
T ss_pred cCHHHHHHHHHHHHHhc-CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCC-CCCCc--cccHHHHHHHHHHH
Confidence 46788888888887654 23332222 1 11001356677788899988887643220 01111 2223 346788888
Q ss_pred HHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCC---CCCCccc------cCCHHHHHHHHH
Q 017200 267 AKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSK---RHMPVSE------YITPEAFERYRA 336 (375)
Q Consensus 267 ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~---~~~~v~~------~v~pe~~~~l~~ 336 (375)
+++....=+.+|-+. ...++.+..+.|.+.|+|.|.+.+=+ .+.. ...++.. .+.|...+...+
T Consensus 160 v~~~~~iPV~vKl~p------~~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~ 233 (334)
T PRK07565 160 VKSAVSIPVAVKLSP------YFSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAI 233 (334)
T ss_pred HHhccCCcEEEEeCC------CchhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHH
Confidence 887431102334221 22367788888999999988875332 1100 0001101 123334455555
Q ss_pred HHHHhhhhhhccchhhhhhcchhHHH
Q 017200 337 LGMEMGFRYVASGPMVRSSYKVVGWC 362 (375)
Q Consensus 337 ~a~~~gf~~~~sgp~vrssy~a~~~~ 362 (375)
+.....+...++| -++|...|-|++
T Consensus 234 ~~~~~~ipIig~G-GI~s~~Da~e~l 258 (334)
T PRK07565 234 LSGRVGADLAATT-GVHDAEDVIKML 258 (334)
T ss_pred HHhhcCCCEEEEC-CCCCHHHHHHHH
Confidence 5555566666666 566655554443
|
|
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=87.18 E-value=9.7 Score=36.71 Aligned_cols=141 Identities=18% Similarity=0.261 Sum_probs=81.1
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcc-------------c--HHHHHHHHHHHHHhCCCcEEEe---ecCCC
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQ-------------G--SGHFAQTVRKLKELKPNMLIEA---LVPDF 218 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~-------------G--~~~~~~lir~Ik~~~p~i~Ie~---l~pd~ 218 (375)
.|.+.-.+.++++.+.|++-|-|----.|-+.|| | .+.+.+++++|++..+++.+-. .-|-+
T Consensus 21 P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~ 100 (256)
T TIGR00262 21 PTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIF 100 (256)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHh
Confidence 3678888999999999998887654433333443 1 3567788888886533333222 22322
Q ss_pred C-CChHHHHHHHHcCccccccc---ccchHHHHHHhcCC---------CCCHHHHHHHHHHHHHhCCCCceEEEeEEEec
Q 017200 219 R-GNNGCVREVAKSGLNVFAHN---IETVEELQSAVRDH---------RANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 285 (375)
Q Consensus 219 ~-g~~e~l~~L~~aGldv~~hn---lEtv~rl~~~mr~r---------~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl 285 (375)
. |..+.++.++++|+|.+-.. .|...++.+.++.. ..+..++++.+... . .|+.-..+.+ |.
T Consensus 101 ~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~---~-~gfiy~vs~~-G~ 175 (256)
T TIGR00262 101 RKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEK---S-QGFVYLVSRA-GV 175 (256)
T ss_pred hhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHh---C-CCCEEEEECC-CC
Confidence 1 33667899999999975443 23344555544321 11222333222222 2 2454443444 88
Q ss_pred -CCC---HHHHHHHHHHHHHc
Q 017200 286 -GET---PDQVVSTMEKVRAA 302 (375)
Q Consensus 286 -GET---~ee~~etl~~Lrel 302 (375)
|+. ..++.+.++.+|+.
T Consensus 176 TG~~~~~~~~~~~~i~~lr~~ 196 (256)
T TIGR00262 176 TGARNRAASALNELVKRLKAY 196 (256)
T ss_pred CCCcccCChhHHHHHHHHHhh
Confidence 763 46677888888875
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=87.11 E-value=22 Score=32.84 Aligned_cols=121 Identities=14% Similarity=0.244 Sum_probs=72.3
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.+.+++.+.|++..+.|.+-+++..-+. ...+. .+.++.|++.. ++.| +..++.-+.+.++.+.++|.|.+
T Consensus 28 ~~~~~~~~~A~~~~~~GA~~l~v~~~~~--~~~g~----~~~~~~i~~~v-~iPi--~~~~~i~~~~~v~~~~~~Gad~v 98 (217)
T cd00331 28 REDFDPVEIAKAYEKAGAAAISVLTEPK--YFQGS----LEDLRAVREAV-SLPV--LRKDFIIDPYQIYEARAAGADAV 98 (217)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeCcc--ccCCC----HHHHHHHHHhc-CCCE--EECCeecCHHHHHHHHHcCCCEE
Confidence 5778999999999999999997763221 11111 24566666542 3333 33455446778999999999988
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
..+... ...+...+.++.++. .|+.+ |+.+ -+++| ++.+.+.+++++.++
T Consensus 99 ~l~~~~------------~~~~~~~~~~~~~~~---~g~~~----~v~v-~~~~e----~~~~~~~g~~~i~~t 148 (217)
T cd00331 99 LLIVAA------------LDDEQLKELYELARE---LGMEV----LVEV-HDEEE----LERALALGAKIIGIN 148 (217)
T ss_pred EEeecc------------CCHHHHHHHHHHHHH---cCCeE----EEEE-CCHHH----HHHHHHcCCCEEEEe
Confidence 654211 112333344455555 24433 4444 25655 444556788888765
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=86.81 E-value=11 Score=38.32 Aligned_cols=120 Identities=16% Similarity=0.190 Sum_probs=75.9
Q ss_pred chHHHHHHHHHhcCC----cEEEEEeeeCCCCCcccHHHHHHHH-------------HHHHH------hCCCcEEEeecC
Q 017200 160 DEPTNVAEAIASWGL----DYVVITSVDRDDLADQGSGHFAQTV-------------RKLKE------LKPNMLIEALVP 216 (375)
Q Consensus 160 eEi~~~a~al~~~G~----~eIvLTsgdr~dl~d~G~~~~~~li-------------r~Ik~------~~p~i~Ie~l~p 216 (375)
++....+++++.+|- -+.++.||.--.||..-.++|..-+ ++++- +.-++.|+ --|
T Consensus 153 ~QaR~Rv~QLk~LGHsvDKVE~i~MGGTFMsLPe~YRd~FI~nLHdALSGhts~~v~EAv~yse~s~tKCiGiTIE-TRP 231 (554)
T KOG2535|consen 153 LQARGRVEQLKQLGHSVDKVEFIVMGGTFMSLPEEYRDYFIRNLHDALSGHTSANVEEAVKYSERSLTKCIGITIE-TRP 231 (554)
T ss_pred HHHHHHHHHHHHhCCccceeEEEEecceeecChHHHHHHHHHHHHHHhcCCCccCHHHHHHhhhhccceeeeEEee-cCc
Confidence 444556788888884 3566677764445432122222111 11211 01123333 235
Q ss_pred CCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec
Q 017200 217 DFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 285 (375)
Q Consensus 217 d~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl 285 (375)
|+- ....|..+...|...+.++++.+ +.+-+.-+ |+++.....+....+|+ .|..+-++||=-|
T Consensus 232 DyC-~~~Hl~~ML~YGCTRlEiGVQS~YEDVARDTN-RGHTV~aVce~F~laKD---aG~KvV~HMMPdL 296 (554)
T KOG2535|consen 232 DYC-LKRHLSDMLTYGCTRLEIGVQSVYEDVARDTN-RGHTVKAVCESFHLAKD---AGFKVVAHMMPDL 296 (554)
T ss_pred ccc-hhhhHHHHHhcCCceEEeccchhHHHhhhccc-CCccHHHHHHHhhhhhc---cCceeehhhCCCC
Confidence 654 35678888889999888887654 56655555 89999999999999998 6899999999555
|
|
| >cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll | Back alignment and domain information |
|---|
Probab=86.80 E-value=7.7 Score=38.57 Aligned_cols=53 Identities=25% Similarity=0.481 Sum_probs=42.0
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcc-c------HHHHHHHHHHHHHhCCCcEE
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQ-G------SGHFAQTVRKLKELKPNMLI 211 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~-G------~~~~~~lir~Ik~~~p~i~I 211 (375)
++.+++++.++.+.++|++-|.|=|+. +..|. | -.-+...|+.||+.+|++.|
T Consensus 48 ~s~d~l~~~~~~~~~~Gi~~v~LFgv~--~~Kd~~gs~A~~~~g~v~~air~iK~~~p~l~v 107 (314)
T cd00384 48 LSVDSLVEEAEELADLGIRAVILFGIP--EHKDEIGSEAYDPDGIVQRAIRAIKEAVPELVV 107 (314)
T ss_pred eCHHHHHHHHHHHHHCCCCEEEEECCC--CCCCCCcccccCCCChHHHHHHHHHHhCCCcEE
Confidence 789999999999999999999999983 22221 1 12367899999999998765
|
This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste |
| >PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=86.79 E-value=18 Score=32.78 Aligned_cols=113 Identities=19% Similarity=0.203 Sum_probs=61.8
Q ss_pred chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc
Q 017200 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (375)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn 239 (375)
++..+.++.+.+.|++.|+|.-.+ .. ...+...++.+++......+.+++. +.++.+.++|+|.+...
T Consensus 21 ~~~~~~~~~~~~~gv~~v~lr~~~---~~---~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~a~~~gad~vh~~ 88 (212)
T PRK00043 21 RDLLEVVEAALEGGVTLVQLREKG---LD---TRERLELARALKELCRRYGVPLIVN------DRVDLALAVGADGVHLG 88 (212)
T ss_pred ccHHHHHHHHHhcCCCEEEEeCCC---CC---HHHHHHHHHHHHHHHHHhCCeEEEe------ChHHHHHHcCCCEEecC
Confidence 457777888889999999876332 22 2335556666654321122223332 35788888999876442
Q ss_pred ccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 240 lEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
.+..+ ...++..+. .|. ++|. --|.+|..+.. +.|+|+|.++.++
T Consensus 89 ~~~~~----------------~~~~~~~~~---~~~------~~g~~~~t~~e~~~a~----~~gaD~v~~~~~~ 134 (212)
T PRK00043 89 QDDLP----------------VADARALLG---PDA------IIGLSTHTLEEAAAAL----AAGADYVGVGPIF 134 (212)
T ss_pred cccCC----------------HHHHHHHcC---CCC------EEEEeCCCHHHHHHHh----HcCCCEEEECCcc
Confidence 22100 111122211 222 3344 34777665443 6799999987665
|
|
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=86.76 E-value=17 Score=34.56 Aligned_cols=130 Identities=11% Similarity=0.076 Sum_probs=77.4
Q ss_pred chHHHHHHHHHh-cCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccc
Q 017200 160 DEPTNVAEAIAS-WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (375)
Q Consensus 160 eEi~~~a~al~~-~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~h 238 (375)
.+|++.|+...+ .|+++++|.=-+.. . .|...-.++|++|.+. ..+.|. .+.-..+.|.++.+.++|++.+-.
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l~ivDLd~a--~-~~~~~n~~~I~~i~~~-~~~pi~--vGGGIrs~e~v~~~l~~Ga~kvvi 104 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRIHIVDLIGA--K-AQHAREFDYIKSLRRL-TTKDIE--VGGGIRTKSQIMDYFAAGINYCIV 104 (234)
T ss_pred CCHHHHHHHHHhccCCCEEEEEECccc--c-cCCcchHHHHHHHHhh-cCCeEE--EcCCcCCHHHHHHHHHCCCCEEEE
Confidence 467778998888 69999998843321 1 1223356788888763 334443 322222789999999999998766
Q ss_pred cccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEE----EecC---CCHHHHHHHHHHHHHcCCcEEeee
Q 017200 239 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIM----LGCG---ETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 239 nlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~im----vGlG---ET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
+-++.+ ..+.++.+.+.+|..+.+.-+.- +-.| ++.-+..+.++.+.++++..+-+.
T Consensus 105 gt~a~~---------------~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~t 168 (234)
T PRK13587 105 GTKGIQ---------------DTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYT 168 (234)
T ss_pred CchHhc---------------CHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEEe
Confidence 544321 12344444444443233333332 1112 455566788888888888766554
|
|
| >PRK09722 allulose-6-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=86.56 E-value=22 Score=33.92 Aligned_cols=116 Identities=19% Similarity=0.258 Sum_probs=73.1
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC--CCcEEEeecCCCCCChHHHHHHHHcCcc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK--PNMLIEALVPDFRGNNGCVREVAKSGLN 234 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~--p~i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (375)
.|+-.+.+.++.+.+ |++++++==.|..-.|...+. .++++.|++.. | +.+++.+-+ ....++.+.++|+|
T Consensus 12 ad~~~l~~el~~l~~-g~d~lH~DiMDG~FVPN~tfg--~~~i~~ir~~t~~~-~DvHLMv~~---P~~~i~~~~~aGad 84 (229)
T PRK09722 12 MDLLKFKEQIEFLNS-KADYFHIDIMDGHFVPNLTLS--PFFVSQVKKLASKP-LDVHLMVTD---PQDYIDQLADAGAD 84 (229)
T ss_pred cCHHHHHHHHHHHHh-CCCEEEEecccCccCCCcccC--HHHHHHHHhcCCCC-eEEEEEecC---HHHHHHHHHHcCCC
Confidence 455677788888877 999998866664444432111 45777787642 3 455555432 24578999999999
Q ss_pred cccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHH
Q 017200 235 VFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTME 297 (375)
Q Consensus 235 v~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~ 297 (375)
.+....|+.+ ....++++.+|+ .| .++++-+.-+=..+.+...|.
T Consensus 85 ~it~H~Ea~~-------------~~~~~~i~~Ik~---~G--~kaGlalnP~T~~~~l~~~l~ 129 (229)
T PRK09722 85 FITLHPETIN-------------GQAFRLIDEIRR---AG--MKVGLVLNPETPVESIKYYIH 129 (229)
T ss_pred EEEECccCCc-------------chHHHHHHHHHH---cC--CCEEEEeCCCCCHHHHHHHHH
Confidence 9988888542 112356677777 46 477887777744444443443
|
|
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=86.55 E-value=3 Score=41.98 Aligned_cols=72 Identities=24% Similarity=0.294 Sum_probs=51.7
Q ss_pred cchHHHHHHHHHh--cCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 159 PDEPTNVAEAIAS--WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 159 ~eEi~~~a~al~~--~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
+++. +.++++.+ .|++.|+|=.-+. -..++.++|+.||+.+|++.| .-++.. +.|..+.|.++|+|.+
T Consensus 107 ~~d~-er~~~L~~~~~g~D~iviD~AhG------hs~~~i~~ik~ik~~~P~~~v--IaGNV~-T~e~a~~Li~aGAD~v 176 (346)
T PRK05096 107 DADF-EKTKQILALSPALNFICIDVANG------YSEHFVQFVAKAREAWPDKTI--CAGNVV-TGEMVEELILSGADIV 176 (346)
T ss_pred HHHH-HHHHHHHhcCCCCCEEEEECCCC------cHHHHHHHHHHHHHhCCCCcE--EEeccc-CHHHHHHHHHcCCCEE
Confidence 3444 44556666 5999999765443 267899999999999998654 333332 6889999999999988
Q ss_pred cccc
Q 017200 237 AHNI 240 (375)
Q Consensus 237 ~hnl 240 (375)
-.++
T Consensus 177 KVGI 180 (346)
T PRK05096 177 KVGI 180 (346)
T ss_pred EEcc
Confidence 5443
|
|
| >KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.15 E-value=2.4 Score=43.64 Aligned_cols=102 Identities=15% Similarity=0.177 Sum_probs=67.2
Q ss_pred chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc
Q 017200 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (375)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn 239 (375)
|+=....+.+++.|++.|+|-|-.. ...+..++|+.||+.+|++.|- -++.. ..++.+.|.++|+|.+..+
T Consensus 250 e~dK~rl~ll~~aGvdvviLDSSqG------nS~~qiemik~iK~~yP~l~Vi--aGNVV-T~~qa~nLI~aGaDgLrVG 320 (503)
T KOG2550|consen 250 DDDKERLDLLVQAGVDVVILDSSQG------NSIYQLEMIKYIKETYPDLQII--AGNVV-TKEQAANLIAAGADGLRVG 320 (503)
T ss_pred cchhHHHHHhhhcCCcEEEEecCCC------cchhHHHHHHHHHhhCCCceee--cccee-eHHHHHHHHHccCceeEec
Confidence 4444556678899999999876543 3678899999999999987663 22222 5789999999999987666
Q ss_pred ccc-hHHHHHHhc-CCCCCHHHHHHHHHHHHHh
Q 017200 240 IET-VEELQSAVR-DHRANFKQSLDVLMMAKDY 270 (375)
Q Consensus 240 lEt-v~rl~~~mr-~r~~s~~~~l~vl~~ak~~ 270 (375)
+=+ +--+.+.+. -.+.......++.+.|+..
T Consensus 321 MGsGSiCiTqevma~GrpQ~TAVy~va~~A~q~ 353 (503)
T KOG2550|consen 321 MGSGSICITQKVMACGRPQGTAVYKVAEFANQF 353 (503)
T ss_pred cccCceeeeceeeeccCCcccchhhHHHHHHhc
Confidence 431 111111111 1122334556778888874
|
|
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=85.67 E-value=12 Score=35.77 Aligned_cols=162 Identities=14% Similarity=0.218 Sum_probs=90.9
Q ss_pred cchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccc
Q 017200 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (375)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~h 238 (375)
..+|++.|+...+.|+++++|.=-+.. . .|...-.++|++|.+.. ..+ ..+.=..+.+.++.+.++|++.+-.
T Consensus 29 ~~dP~~~A~~~~~~ga~~lhivDLd~a-~--~g~~~n~~~i~~i~~~~--~~v--~vGGGIrs~e~~~~~l~~Ga~rvvi 101 (241)
T PRK14114 29 EKDPAELVEKLIEEGFTLIHVVDLSKA-I--ENSVENLPVLEKLSEFA--EHI--QIGGGIRSLDYAEKLRKLGYRRQIV 101 (241)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEECCCc-c--cCCcchHHHHHHHHhhc--CcE--EEecCCCCHHHHHHHHHCCCCEEEE
Confidence 468999999999999999999844321 1 12333567888887653 222 2222122689999999999998766
Q ss_pred cccchH--HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE----EE--ec-CCCHHHHHHHHHHHHHcCCcEEee
Q 017200 239 NIETVE--ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI----ML--GC-GETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 239 nlEtv~--rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~i----mv--Gl-GET~ee~~etl~~Lrelgvd~v~i 309 (375)
|-++++ ++.+.+ .+ ++..+.+.-++ ++ |. -.|.-+..+.++.+.++|+..+-+
T Consensus 102 gT~a~~~p~~l~~~-----------------~~-~~~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~ 163 (241)
T PRK14114 102 SSKVLEDPSFLKFL-----------------KE-IDVEPVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVH 163 (241)
T ss_pred CchhhCCHHHHHHH-----------------HH-hCCCEEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHhcCCCEEEE
Confidence 544321 333332 11 11112222221 11 11 236667888899999999987666
Q ss_pred ecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccchhhhh
Q 017200 310 GQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRS 354 (375)
Q Consensus 310 ~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrs 354 (375)
..--+- ++. ..-.++.++.++........+|| -|||
T Consensus 164 tdI~rd---Gt~-----~G~d~el~~~l~~~~~~pviasG-Gv~s 199 (241)
T PRK14114 164 TEIEKD---GTL-----QEHDFSLTRKIAIEAEVKVFAAG-GISS 199 (241)
T ss_pred Eeechh---hcC-----CCcCHHHHHHHHHHCCCCEEEEC-CCCC
Confidence 322222 211 00124445555555555555666 4544
|
|
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=85.63 E-value=15 Score=36.10 Aligned_cols=52 Identities=15% Similarity=0.238 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCCCCceEEEeEEEe----cCCCHHHHHHHHHHHHHcCCcEEeeecC
Q 017200 261 LDVLMMAKDYVPAGTLTKTSIMLG----CGETPDQVVSTMEKVRAAGVDVMTFGQY 312 (375)
Q Consensus 261 l~vl~~ak~~~p~Gl~tkt~imvG----lGET~ee~~etl~~Lrelgvd~v~i~qY 312 (375)
+++++.+++..+.++.+...+=.+ -|.|.+|.++.++.|.+.|+|++++...
T Consensus 195 ~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g 250 (327)
T cd02803 195 LEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGG 250 (327)
T ss_pred HHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 688888888764434333322211 2568999999999999999999988643
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PRK05581 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=85.61 E-value=29 Score=31.78 Aligned_cols=77 Identities=14% Similarity=0.249 Sum_probs=49.8
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC-CcEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NMLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p-~i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
.|+....+.++++.+.|++.|.|--.|....+. .....+.++.|++..+ .+.+.+++-+ ..+.++.+.++|+|.
T Consensus 13 ~~~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~--~~~~~~~~~~i~~~~~~~~~v~l~v~d---~~~~i~~~~~~g~d~ 87 (220)
T PRK05581 13 ADFARLGEEVKAVEAAGADWIHVDVMDGHFVPN--LTIGPPVVEAIRKVTKLPLDVHLMVEN---PDRYVPDFAKAGADI 87 (220)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCccCCcCCC--cCcCHHHHHHHHhcCCCcEEEEeeeCC---HHHHHHHHHHcCCCE
Confidence 566788899999999999999994222221221 1223567888887654 2345555533 244678888999998
Q ss_pred ccc
Q 017200 236 FAH 238 (375)
Q Consensus 236 ~~h 238 (375)
+..
T Consensus 88 v~v 90 (220)
T PRK05581 88 ITF 90 (220)
T ss_pred EEE
Confidence 543
|
|
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=85.53 E-value=5.3 Score=37.49 Aligned_cols=130 Identities=22% Similarity=0.308 Sum_probs=70.2
Q ss_pred CcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCC-cEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN-MLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 158 d~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~-i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
++..+.+.++++.+.|++.++|=--|....+...+. .++++.|++.... +.+.+++-+ ..+.++.+.++|.|.+
T Consensus 18 ~~~~l~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g--~~~~~~l~~~~~~~~~vhlmv~~---p~d~~~~~~~~gad~v 92 (229)
T PLN02334 18 DFANLAEEAKRVLDAGADWLHVDVMDGHFVPNLTIG--PPVVKALRKHTDAPLDCHLMVTN---PEDYVPDFAKAGASIF 92 (229)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCcCCccccC--HHHHHHHHhcCCCcEEEEeccCC---HHHHHHHHHHcCCCEE
Confidence 445788899999999999999821111101110000 1677888765311 245545422 1456888899999988
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec---CCCHHHHHHHHHHHHHcC-CcEEeeecC
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC---GETPDQVVSTMEKVRAAG-VDVMTFGQY 312 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl---GET~ee~~etl~~Lrelg-vd~v~i~qY 312 (375)
...+|. ..-+...+.++.+++ .|+ ++|+ -.|..+.++ .+.+.+ +|.+.++..
T Consensus 93 ~vH~~q------------~~~d~~~~~~~~i~~---~g~------~iGls~~~~t~~~~~~---~~~~~~~~Dyi~~~~v 148 (229)
T PLN02334 93 TFHIEQ------------ASTIHLHRLIQQIKS---AGM------KAGVVLNPGTPVEAVE---PVVEKGLVDMVLVMSV 148 (229)
T ss_pred EEeecc------------ccchhHHHHHHHHHH---CCC------eEEEEECCCCCHHHHH---HHHhccCCCEEEEEEE
Confidence 544441 001223455666665 343 3344 235555443 333453 888877644
Q ss_pred CCCCC
Q 017200 313 MRPSK 317 (375)
Q Consensus 313 l~P~~ 317 (375)
.|+.
T Consensus 149 -~pg~ 152 (229)
T PLN02334 149 -EPGF 152 (229)
T ss_pred -ecCC
Confidence 3543
|
|
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=85.51 E-value=7.4 Score=37.81 Aligned_cols=77 Identities=12% Similarity=0.130 Sum_probs=50.7
Q ss_pred hHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHH
Q 017200 222 NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVR 300 (375)
Q Consensus 222 ~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~ee~~etl~~Lr 300 (375)
.+.++.+.+.|++.+-.+--+.+ . ..-+.+++.++++.+.+..+. +..+|+|. +.+-+|.++..+..+
T Consensus 25 ~~~i~~l~~~Gv~gi~~~Gs~GE-----~--~~ls~~Er~~~~~~~~~~~~~----~~~vi~gv~~~~~~~~i~~a~~a~ 93 (292)
T PRK03170 25 RKLVDYLIANGTDGLVVVGTTGE-----S--PTLTHEEHEELIRAVVEAVNG----RVPVIAGTGSNSTAEAIELTKFAE 93 (292)
T ss_pred HHHHHHHHHcCCCEEEECCcCCc-----c--ccCCHHHHHHHHHHHHHHhCC----CCcEEeecCCchHHHHHHHHHHHH
Confidence 44566677777776533222222 1 134678888888888775432 34578888 468888888888888
Q ss_pred HcCCcEEee
Q 017200 301 AAGVDVMTF 309 (375)
Q Consensus 301 elgvd~v~i 309 (375)
++|+|.+-+
T Consensus 94 ~~G~d~v~~ 102 (292)
T PRK03170 94 KAGADGALV 102 (292)
T ss_pred HcCCCEEEE
Confidence 888887665
|
|
| >cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) | Back alignment and domain information |
|---|
Probab=85.08 E-value=29 Score=31.33 Aligned_cols=77 Identities=14% Similarity=0.228 Sum_probs=48.5
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC-CcEEEeecCCCCCChHHHHHHHHcCcc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NMLIEALVPDFRGNNGCVREVAKSGLN 234 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p-~i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (375)
.+|+.++.+.++++.+.|++.|.|--.+....+. ...-.+.++.|++..+ .+.+.+++-+ ..+.++.+.++|+|
T Consensus 8 ~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~--~~~~~~~~~~i~~~~~~~~~v~l~~~d---~~~~~~~~~~~g~d 82 (211)
T cd00429 8 SADFANLGEELKRLEEAGADWIHIDVMDGHFVPN--LTFGPPVVKALRKHTDLPLDVHLMVEN---PERYIEAFAKAGAD 82 (211)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCc--cccCHHHHHHHHhhCCCcEEEEeeeCC---HHHHHHHHHHcCCC
Confidence 3788889999999999999999884323221121 1111467778876542 2334444422 13468888899999
Q ss_pred ccc
Q 017200 235 VFA 237 (375)
Q Consensus 235 v~~ 237 (375)
.+.
T Consensus 83 gv~ 85 (211)
T cd00429 83 IIT 85 (211)
T ss_pred EEE
Confidence 863
|
This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis. |
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=84.88 E-value=9.2 Score=36.03 Aligned_cols=168 Identities=17% Similarity=0.202 Sum_probs=95.7
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
....+|++.|+.+.++|+++++|.=-|.- . .|...-.++|+.|.+..+ +.|.+= +.+. +.+.++.+.+.|++.+
T Consensus 26 ~~~~dP~~~a~~~~~~g~~~l~ivDLdaa--~-~g~~~n~~~i~~i~~~~~-~~i~vg-GGIr-s~ed~~~ll~~Ga~~V 99 (229)
T PF00977_consen 26 VYSGDPVEVAKAFNEQGADELHIVDLDAA--K-EGRGSNLELIKEIAKETG-IPIQVG-GGIR-SIEDAERLLDAGADRV 99 (229)
T ss_dssp CECCCHHHHHHHHHHTT-SEEEEEEHHHH--C-CTHHHHHHHHHHHHHHSS-SEEEEE-SSE--SHHHHHHHHHTT-SEE
T ss_pred EECcCHHHHHHHHHHcCCCEEEEEEccCc--c-cCchhHHHHHHHHHhcCC-ccEEEe-CccC-cHHHHHHHHHhCCCEE
Confidence 34568899999999999999999843321 1 133445688888888754 444432 1222 7889999999999876
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC-CceEEEeEEEe-----cCC---CHHHHHHHHHHHHHcCCcEE
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPA-GTLTKTSIMLG-----CGE---TPDQVVSTMEKVRAAGVDVM 307 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~-Gl~tkt~imvG-----lGE---T~ee~~etl~~Lrelgvd~v 307 (375)
-.+-++.+ + .+.++.+.+.++. -+.+.-++.-| .|- |.-+..+.++.+.+.++..+
T Consensus 100 vigt~~~~-------~--------~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g~~~i 164 (229)
T PF00977_consen 100 VIGTEALE-------D--------PELLEELAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEELGAGEI 164 (229)
T ss_dssp EESHHHHH-------C--------CHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHTT-SEE
T ss_pred EeChHHhh-------c--------hhHHHHHHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhcCCcEE
Confidence 65533321 0 1222222222211 23334443333 232 34578888999999999887
Q ss_pred eeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccchhhhh
Q 017200 308 TFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRS 354 (375)
Q Consensus 308 ~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrs 354 (375)
-+..--+- ++. ..-.++.++.++........+|| -|||
T Consensus 165 i~tdi~~d---Gt~-----~G~d~~~~~~l~~~~~~~viasG-Gv~~ 202 (229)
T PF00977_consen 165 ILTDIDRD---GTM-----QGPDLELLKQLAEAVNIPVIASG-GVRS 202 (229)
T ss_dssp EEEETTTT---TTS-----SS--HHHHHHHHHHHSSEEEEES-S--S
T ss_pred EEeecccc---CCc-----CCCCHHHHHHHHHHcCCCEEEec-CCCC
Confidence 66322222 221 11125667777777777777888 5655
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >TIGR00126 deoC deoxyribose-phosphate aldolase | Back alignment and domain information |
|---|
Probab=84.77 E-value=35 Score=32.05 Aligned_cols=174 Identities=17% Similarity=0.125 Sum_probs=108.9
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCC------hHHHHHHHH
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGN------NGCVREVAK 230 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~------~e~l~~L~~ 230 (375)
.+.+++.+.++...+.|+.-|++. | .|..+.+..-+ ..++.|.+.++.-.|. ...++...+
T Consensus 15 ~t~~~i~~lc~~A~~~~~~avcv~-------p-----~~v~~a~~~l~-~~~v~v~tVigFP~G~~~~~~K~~E~~~Av~ 81 (211)
T TIGR00126 15 TTEEDIITLCAQAKTYKFAAVCVN-------P-----SYVPLAKELLK-GTEVRICTVVGFPLGASTTDVKLYETKEAIK 81 (211)
T ss_pred CCHHHHHHHHHHHHhhCCcEEEeC-------H-----HHHHHHHHHcC-CCCCeEEEEeCCCCCCCcHHHHHHHHHHHHH
Confidence 678999999999999999888863 1 24444443322 2357777766543342 234455666
Q ss_pred cCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC-CCHHHHHHHHHHHHHcCCcEEee
Q 017200 231 SGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 231 aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlG-ET~ee~~etl~~Lrelgvd~v~i 309 (375)
.|.|-+..-+ + +..+. ..+|+...+-+..+.+... |+.++. |+-.| -+++++....+...++|.|+|..
T Consensus 82 ~GAdEiDvv~---n--~g~l~--~g~~~~v~~ei~~i~~~~~-g~~lKv--IlE~~~L~~~ei~~a~~ia~eaGADfvKT 151 (211)
T TIGR00126 82 YGADEVDMVI---N--IGALK--DGNEEVVYDDIRAVVEACA-GVLLKV--IIETGLLTDEEIRKACEICIDAGADFVKT 151 (211)
T ss_pred cCCCEEEeec---c--hHhhh--CCcHHHHHHHHHHHHHHcC-CCeEEE--EEecCCCCHHHHHHHHHHHHHhCCCEEEe
Confidence 6776543321 1 12233 4567888888888887664 577777 44442 67899999999999999999977
Q ss_pred ecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccchhhhhhcchhHHHHH
Q 017200 310 GQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKVVGWCYY 364 (375)
Q Consensus 310 ~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrssy~a~~~~~~ 364 (375)
..=+.| .-.+++..+.+++.... .....+|| -+| +|..-..|+.
T Consensus 152 sTGf~~--------~gat~~dv~~m~~~v~~-~v~IKaaG-Gir-t~~~a~~~i~ 195 (211)
T TIGR00126 152 STGFGA--------GGATVEDVRLMRNTVGD-TIGVKASG-GVR-TAEDAIAMIE 195 (211)
T ss_pred CCCCCC--------CCCCHHHHHHHHHHhcc-CCeEEEeC-CCC-CHHHHHHHHH
Confidence 311112 11456666777665443 45666888 566 5554444443
|
Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria. |
| >cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR) | Back alignment and domain information |
|---|
Probab=84.38 E-value=8.8 Score=36.96 Aligned_cols=49 Identities=12% Similarity=0.071 Sum_probs=36.7
Q ss_pred CcchHHHHHHHHHhcCCcEEEEEeeeCCCCCc------ccHHHHHHHHHHHHHhC
Q 017200 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLAD------QGSGHFAQTVRKLKELK 206 (375)
Q Consensus 158 d~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d------~G~~~~~~lir~Ik~~~ 206 (375)
+..++...+..+.+.|++.|++.+||.+...+ .+..+-.++|+.++..+
T Consensus 71 n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~~ 125 (274)
T cd00537 71 NRIELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKEN 125 (274)
T ss_pred CHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhc
Confidence 45788888899999999999999998654432 23445677888887754
|
5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease. |
| >TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form | Back alignment and domain information |
|---|
Probab=84.11 E-value=6.8 Score=37.97 Aligned_cols=111 Identities=12% Similarity=0.108 Sum_probs=66.8
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCC----CcccHHHHHHHHHHHHHhCCCcEEEe-ecCCCC---CC-hHHHH-
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDL----ADQGSGHFAQTVRKLKELKPNMLIEA-LVPDFR---GN-NGCVR- 226 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl----~d~G~~~~~~lir~Ik~~~p~i~Ie~-l~pd~~---g~-~e~l~- 226 (375)
++..++......+.+.|++.|++.+||.+.. +++.+.+-.++|+.|++.++++.|.+ ..|+-. .+ .+.++
T Consensus 70 ~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~ 149 (272)
T TIGR00676 70 ATREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIEN 149 (272)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHH
Confidence 4567888888899999999999888875421 12335566788888988777777764 555411 11 22333
Q ss_pred --HHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec
Q 017200 227 --EVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 285 (375)
Q Consensus 227 --~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl 285 (375)
.=.++|.|.+- -+ .-++.+...+.++.+++ .|+ +.-|+.|+
T Consensus 150 L~~K~~aGA~f~i----------TQ---~~fd~~~~~~~~~~~~~---~gi--~~PIi~Gi 192 (272)
T TIGR00676 150 LKRKVDAGADYAI----------TQ---LFFDNDDYYRFVDRCRA---AGI--DVPIIPGI 192 (272)
T ss_pred HHHHHHcCCCeEe----------ec---cccCHHHHHHHHHHHHH---cCC--CCCEeccc
Confidence 33467776331 01 12455555666666666 342 23466666
|
This protein is an FAD-containing flavoprotein. |
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=84.10 E-value=45 Score=32.79 Aligned_cols=132 Identities=16% Similarity=0.194 Sum_probs=81.8
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.+.+.+...++++.+.+.--|+-++...-++. |.. +..+++.+.+.. .+.|. +.-|+-.+.+.++...++|.+++
T Consensus 21 ~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~--~~~-~~~~~~~~a~~~-~vPV~-lHLDHg~~~e~i~~ai~~Gf~SV 95 (283)
T PRK08185 21 ADSCFLRAVVEEAEANNAPAIIAIHPNELDFL--GDN-FFAYVRERAKRS-PVPFV-IHLDHGATIEDVMRAIRCGFTSV 95 (283)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeCcchhhhc--cHH-HHHHHHHHHHHC-CCCEE-EECCCCCCHHHHHHHHHcCCCEE
Confidence 45777888888888998887776666443332 234 788888877654 23332 55576667899999999997764
Q ss_pred cccccchHHHHHHhcCCCCCHHH----HHHHHHHHHHhCCCCceE--EEeEEEecCCCH------H----HHHHHHHHHH
Q 017200 237 AHNIETVEELQSAVRDHRANFKQ----SLDVLMMAKDYVPAGTLT--KTSIMLGCGETP------D----QVVSTMEKVR 300 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~----~l~vl~~ak~~~p~Gl~t--kt~imvGlGET~------e----e~~etl~~Lr 300 (375)
- ++.+ ..++++ ..++++.++. .|+.+ .-+. +|..|.. + +..+..++++
T Consensus 96 M--~D~S----------~l~~eeNi~~t~~vv~~a~~---~gv~vE~ElG~-vg~~e~~~~~~~~~~~~t~peea~~f~~ 159 (283)
T PRK08185 96 M--IDGS----------LLPYEENVALTKEVVELAHK---VGVSVEGELGT-IGNTGTSIEGGVSEIIYTDPEQAEDFVS 159 (283)
T ss_pred E--EeCC----------CCCHHHHHHHHHHHHHHHHH---cCCeEEEEEee-ccCcccccccccccccCCCHHHHHHHHH
Confidence 2 2222 223333 3455555565 34443 4444 3432211 1 4566678888
Q ss_pred HcCCcEEee
Q 017200 301 AAGVDVMTF 309 (375)
Q Consensus 301 elgvd~v~i 309 (375)
+.|+|.+-+
T Consensus 160 ~TgvD~LAv 168 (283)
T PRK08185 160 RTGVDTLAV 168 (283)
T ss_pred hhCCCEEEe
Confidence 889998777
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=83.87 E-value=21 Score=37.67 Aligned_cols=174 Identities=16% Similarity=0.156 Sum_probs=99.1
Q ss_pred CCcchHHHH-HHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHh-----CCCcEEEeecCCCCCChHHHHHHHH
Q 017200 157 PDPDEPTNV-AEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL-----KPNMLIEALVPDFRGNNGCVREVAK 230 (375)
Q Consensus 157 ld~eEi~~~-a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~-----~p~i~Ie~l~pd~~g~~e~l~~L~~ 230 (375)
.++++.+.. ++.+.+.++.++.++-.+. .+ -|.-...++++..... .....+..+..-.....+.++.|.+
T Consensus 159 v~~~~sL~eAl~lM~~~~i~~LPVVD~~g-~L--vGIIT~~DLl~~~~~~~~~d~~grl~Vgaav~~~~~~~~ra~~Lv~ 235 (475)
T TIGR01303 159 APADTEPRKAFDLLEHAPRDVAPLVDADG-TL--AGILTRTGALRATIYTPATDAAGRLRIGAAVGINGDVGGKAKALLD 235 (475)
T ss_pred eCCCCcHHHHHHHHHHcCCCEEEEEcCCC-eE--EEEEEHHHHHHHHhCCchhhhccCceehheeeeCccHHHHHHHHHH
Confidence 455555444 4566777888877753211 11 1222233444433211 1123455554432224788999999
Q ss_pred cCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 231 SGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 231 aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
+|+|.+.. ++. .+++ +..++.++.+|+.+|. .-+|+|.+-|.|+..+.+ ++|+|.|.++
T Consensus 236 aGVd~i~~--D~a---------~g~~-~~~~~~i~~i~~~~~~-----~~vi~g~~~t~~~~~~l~----~~G~d~i~vg 294 (475)
T TIGR01303 236 AGVDVLVI--DTA---------HGHQ-VKMISAIKAVRALDLG-----VPIVAGNVVSAEGVRDLL----EAGANIIKVG 294 (475)
T ss_pred hCCCEEEE--eCC---------CCCc-HHHHHHHHHHHHHCCC-----CeEEEeccCCHHHHHHHH----HhCCCEEEEC
Confidence 99998653 332 1233 6678889999986554 468889999988776554 7899999877
Q ss_pred cCCCCCCCC-CC-ccc--cCCHHHHHHHHHHHHHhhhhhhccchhhhhhcc
Q 017200 311 QYMRPSKRH-MP-VSE--YITPEAFERYRALGMEMGFRYVASGPMVRSSYK 357 (375)
Q Consensus 311 qYl~P~~~~-~~-v~~--~v~pe~~~~l~~~a~~~gf~~~~sgp~vrssy~ 357 (375)
+-|+.-- +. +.. ..+........+.+.+.|...+|.| -+|+|..
T Consensus 295 --~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viadG-gi~~~~d 342 (475)
T TIGR01303 295 --VGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWADG-GVRHPRD 342 (475)
T ss_pred --CcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEeC-CCCCHHH
Confidence 5563211 11 111 1122233444444556677777877 6666643
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=83.75 E-value=35 Score=33.56 Aligned_cols=169 Identities=14% Similarity=0.122 Sum_probs=95.4
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.+.+.+...++++.+.+.--|+-++...-.+ .|...+..+++.+.+.. .+.|. +.-|+..+.+.++.-.++|.+++
T Consensus 26 ~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~--~~~~~~~~~~~~~a~~~-~vpV~-lHlDH~~~~e~i~~Ai~~GftSV 101 (286)
T PRK06801 26 LDSHFLRALFAAAKQERSPFIINIAEVHFKY--ISLESLVEAVKFEAARH-DIPVV-LNLDHGLHFEAVVRALRLGFSSV 101 (286)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEeCcchhhc--CCHHHHHHHHHHHHHHC-CCCEE-EECCCCCCHHHHHHHHHhCCcEE
Confidence 3567788888888888887776666543333 34778899998887764 23332 45566557888999999998876
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceE--EEeEEEecCCC------------HHHHHHHHHHHHHc
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLT--KTSIMLGCGET------------PDQVVSTMEKVRAA 302 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~t--kt~imvGlGET------------~ee~~etl~~Lrel 302 (375)
-. +.+.. +-..+.+...++.+.++.. |+.+ -.+-+ | |+. .-+..+..++.++.
T Consensus 102 m~--D~S~l------~~eeNi~~t~~v~~~a~~~---gv~VE~ElG~v-g-g~e~~v~~~~~~~~~~T~pe~a~~f~~~t 168 (286)
T PRK06801 102 MF--DGSTL------EYEENVRQTREVVKMCHAV---GVSVEAELGAV-G-GDEGGALYGEADSAKFTDPQLARDFVDRT 168 (286)
T ss_pred EE--cCCCC------CHHHHHHHHHHHHHHHHHc---CCeEEeecCcc-c-CCCCCcccCCcccccCCCHHHHHHHHHHH
Confidence 43 22110 0011233445566666663 4433 22222 2 211 11336667788889
Q ss_pred CCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhhc
Q 017200 303 GVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVA 347 (375)
Q Consensus 303 gvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~ 347 (375)
|+|.+-+. +. + .|..-.. ..+-.|+.++++....+.-.|+
T Consensus 169 gvD~LAva-iG-t--~Hg~y~~-~~~l~~e~l~~i~~~~~~PLVl 208 (286)
T PRK06801 169 GIDALAVA-IG-N--AHGKYKG-EPKLDFARLAAIHQQTGLPLVL 208 (286)
T ss_pred CcCEEEec-cC-C--CCCCCCC-CCCCCHHHHHHHHHhcCCCEEE
Confidence 99998883 32 1 1221111 1122466666665555544443
|
|
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=83.66 E-value=23 Score=35.61 Aligned_cols=133 Identities=15% Similarity=0.264 Sum_probs=78.9
Q ss_pred hHHHHHHHHHhcCC--cEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccc
Q 017200 161 EPTNVAEAIASWGL--DYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (375)
Q Consensus 161 Ei~~~a~al~~~G~--~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~h 238 (375)
+-.+.+.++.+.|+ +-|+|=.-+ +......++|+.|++.+|++.|-+ ++. ++.+....+.++|+|.+-.
T Consensus 97 ~~~~~~~~Lv~ag~~~d~i~iD~a~------gh~~~~~e~I~~ir~~~p~~~vi~--g~V-~t~e~a~~l~~aGad~i~v 167 (326)
T PRK05458 97 DEYDFVDQLAAEGLTPEYITIDIAH------GHSDSVINMIQHIKKHLPETFVIA--GNV-GTPEAVRELENAGADATKV 167 (326)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCC------CchHHHHHHHHHHHhhCCCCeEEE--Eec-CCHHHHHHHHHcCcCEEEE
Confidence 45577888888865 888774433 225678899999999998765432 222 1678899999999998753
Q ss_pred cc-cchHHHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 239 NI-ETVEELQSAVRD-HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 239 nl-Etv~rl~~~mr~-r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
+. .....+.+.... ...+| -+..+..+.+....-+....+ -.+..|+...|. +|.+.+-++.++
T Consensus 168 g~~~G~~~~t~~~~g~~~~~w--~l~ai~~~~~~~~ipVIAdGG-----I~~~~Di~KaLa----~GA~aV~vG~~~ 233 (326)
T PRK05458 168 GIGPGKVCITKIKTGFGTGGW--QLAALRWCAKAARKPIIADGG-----IRTHGDIAKSIR----FGATMVMIGSLF 233 (326)
T ss_pred CCCCCcccccccccCCCCCcc--HHHHHHHHHHHcCCCEEEeCC-----CCCHHHHHHHHH----hCCCEEEechhh
Confidence 32 111111111110 11223 244455555532110111222 368888887764 599999888665
|
|
| >cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
Probab=83.66 E-value=22 Score=31.37 Aligned_cols=66 Identities=20% Similarity=0.219 Sum_probs=41.5
Q ss_pred cchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.+++.+.++++.+.|++.|+|.-.+. ....+...++.|++......+.+++.+ .++...++|+|.+
T Consensus 11 ~~~~~~~l~~l~~~g~~~i~lr~~~~------~~~~~~~~~~~i~~~~~~~~~~l~~~~------~~~~a~~~g~~~v 76 (196)
T cd00564 11 GEDLLEVVEAALKGGVTLVQLREKDL------SARELLELARALRELCRKYGVPLIIND------RVDLALAVGADGV 76 (196)
T ss_pred cchHHHHHHHHHhcCCCEEEEeCCCC------CHHHHHHHHHHHHHHHHHhCCeEEEeC------hHHHHHHcCCCEE
Confidence 35677888899999999988764322 134455666666654322334444432 3667788898855
|
TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. |
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=83.62 E-value=42 Score=33.39 Aligned_cols=170 Identities=16% Similarity=0.203 Sum_probs=94.9
Q ss_pred cchHHHHHHHHHhcCCcEEEEEee--e-CCCCCccc-HHHHHHHHHHHHHhC--CCcEEEeecCCCCCChHHHHHHHHcC
Q 017200 159 PDEPTNVAEAIASWGLDYVVITSV--D-RDDLADQG-SGHFAQTVRKLKELK--PNMLIEALVPDFRGNNGCVREVAKSG 232 (375)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsg--d-r~dl~d~G-~~~~~~lir~Ik~~~--p~i~Ie~l~pd~~g~~e~l~~L~~aG 232 (375)
+++..+.++.+.+.|++.|.|--. . .+++.... .+.+.++++.+++.. | +.+. +.|++....+.++.+.++|
T Consensus 111 ~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iP-v~vK-l~p~~~~~~~~a~~l~~~G 188 (325)
T cd04739 111 AGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIP-VAVK-LSPFFSALAHMAKQLDAAG 188 (325)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCC-EEEE-cCCCccCHHHHHHHHHHcC
Confidence 578888999988889988877543 1 22222111 145678888888754 3 4444 5666532356778888999
Q ss_pred cccccc-c--ccc-hH-HHHH-----HhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHc
Q 017200 233 LNVFAH-N--IET-VE-ELQS-----AVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAA 302 (375)
Q Consensus 233 ldv~~h-n--lEt-v~-rl~~-----~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrel 302 (375)
+|.+.. | ... ++ +..+ -+. ..+-....++.+..+++.. .+.+- -+|=-.|.+|.++.|. .
T Consensus 189 adgi~~~nt~~~~~id~~~~~~~~~~glS-G~~~~~~al~~v~~v~~~~--~ipIi---g~GGI~s~~Da~e~l~----a 258 (325)
T cd04739 189 ADGLVLFNRFYQPDIDLETLEVVPNLLLS-SPAEIRLPLRWIAILSGRV--KASLA---ASGGVHDAEDVVKYLL----A 258 (325)
T ss_pred CCeEEEEcCcCCCCccccccceecCCCcC-CccchhHHHHHHHHHHccc--CCCEE---EECCCCCHHHHHHHHH----c
Confidence 986532 2 110 11 0000 011 1122345566677766532 12210 0222378888888773 7
Q ss_pred CCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 303 GVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 303 gvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
|.+.|-++.-+- .++. .+.++-.+.|.++..+.||..+
T Consensus 259 GA~~Vqv~ta~~--~~gp----~~~~~i~~~L~~~l~~~g~~~i 296 (325)
T cd04739 259 GADVVMTTSALL--RHGP----DYIGTLLAGLEAWMEEHGYESV 296 (325)
T ss_pred CCCeeEEehhhh--hcCc----hHHHHHHHHHHHHHHHcCCCCH
Confidence 999888862210 0111 1234556777777788888655
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=83.35 E-value=14 Score=36.00 Aligned_cols=168 Identities=15% Similarity=0.204 Sum_probs=89.9
Q ss_pred CcchHHHHHHHHHhcC-CcEEEEEee--e--C-CCCCcccHHHHHHHHHHHHHhCCCcEEEe-ecCCCCCChHHHHHHHH
Q 017200 158 DPDEPTNVAEAIASWG-LDYVVITSV--D--R-DDLADQGSGHFAQTVRKLKELKPNMLIEA-LVPDFRGNNGCVREVAK 230 (375)
Q Consensus 158 d~eEi~~~a~al~~~G-~~eIvLTsg--d--r-~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~-l~pd~~g~~e~l~~L~~ 230 (375)
++++..+.|+.+.+.| ++.|-|--+ + + ........+.+.++++.|++.. ++.|-+ +.|++....+.++.+.+
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~a~~l~~ 180 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTPNVTDIVEIAKAAEE 180 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEEcCCCchhHHHHHHHHHH
Confidence 4789999999999998 998877332 1 1 0011112567889999999864 233322 34444212455677888
Q ss_pred cCcccccc-c--------ccchHHHH----HHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec--CCCHHHHHHH
Q 017200 231 SGLNVFAH-N--------IETVEELQ----SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC--GETPDQVVST 295 (375)
Q Consensus 231 aGldv~~h-n--------lEtv~rl~----~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl--GET~ee~~et 295 (375)
+|+|.+.. | +++-.... .-+. ..+.....++.+..+++.. +++ ++|. -.|.++..+.
T Consensus 181 ~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~s-g~~~~p~~l~~v~~i~~~~--~ip-----vi~~GGI~~~~da~~~ 252 (301)
T PRK07259 181 AGADGLSLINTLKGMAIDIKTRKPILANVTGGLS-GPAIKPIALRMVYQVYQAV--DIP-----IIGMGGISSAEDAIEF 252 (301)
T ss_pred cCCCEEEEEccccccccccccCceeecCCcCccC-CcCcccccHHHHHHHHHhC--CCC-----EEEECCCCCHHHHHHH
Confidence 99886531 1 11100000 0011 1111223567777777743 122 2333 3688888887
Q ss_pred HHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhh
Q 017200 296 MEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (375)
Q Consensus 296 l~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (375)
+ ..|.|.|-++ ++.-.. ..+...-.+.+..+..+.||..
T Consensus 253 l----~aGAd~V~ig---r~ll~~----P~~~~~i~~~l~~~~~~~g~~~ 291 (301)
T PRK07259 253 I----MAGASAVQVG---TANFYD----PYAFPKIIEGLEAYLDKYGIKS 291 (301)
T ss_pred H----HcCCCceeEc---HHHhcC----cHHHHHHHHHHHHHHHHcCCCC
Confidence 7 3688888886 221111 1112223445556666677654
|
|
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=83.34 E-value=12 Score=36.66 Aligned_cols=77 Identities=16% Similarity=0.158 Sum_probs=53.7
Q ss_pred hHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHH
Q 017200 222 NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRA 301 (375)
Q Consensus 222 ~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lre 301 (375)
...++.+.+.|++.+-.+=-|.+ . ..-+.+++.++++.+.+.... +..+|+|.|.+.+|.++..+...+
T Consensus 31 ~~li~~l~~~Gv~Gi~~~GstGE-----~--~~Lt~eEr~~~~~~~~~~~~~----~~pvi~gv~~~t~~~i~~~~~a~~ 99 (303)
T PRK03620 31 REHLEWLAPYGAAALFAAGGTGE-----F--FSLTPDEYSQVVRAAVETTAG----RVPVIAGAGGGTAQAIEYAQAAER 99 (303)
T ss_pred HHHHHHHHHcCCCEEEECcCCcC-----c--ccCCHHHHHHHHHHHHHHhCC----CCcEEEecCCCHHHHHHHHHHHHH
Confidence 45566777778776533211222 1 245678889999988875432 456788886688999999999999
Q ss_pred cCCcEEee
Q 017200 302 AGVDVMTF 309 (375)
Q Consensus 302 lgvd~v~i 309 (375)
+|+|.+-+
T Consensus 100 ~Gadav~~ 107 (303)
T PRK03620 100 AGADGILL 107 (303)
T ss_pred hCCCEEEE
Confidence 99997765
|
|
| >PRK03739 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Probab=82.74 E-value=74 Score=34.24 Aligned_cols=138 Identities=12% Similarity=0.106 Sum_probs=83.1
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHh-C--CCcEEEeecCCCCCC-hHHHHHHHHc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL-K--PNMLIEALVPDFRGN-NGCVREVAKS 231 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~-~--p~i~Ie~l~pd~~g~-~e~l~~L~~a 231 (375)
+++.+|=++.|+++.+.|+++|-+.- |...+. + .+.++.|.+. . ++..+.++.+...++ +..++.++.+
T Consensus 48 ~~s~~~Ki~ia~~L~~~GV~~IE~Gf---P~~s~~--e--~e~v~~i~~~~~~~~~~~i~~l~r~~~~di~~a~~a~~~~ 120 (552)
T PRK03739 48 PMSPERKLRMFDLLVKIGFKEIEVGF---PSASQT--D--FDFVRELIEEGLIPDDVTIQVLTQAREHLIERTFEALEGA 120 (552)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEC---CCcChH--H--HHHHHHHHHhcCCCCCCEEEEEeccchhHHHHHHHHhcCC
Confidence 58999999999999999999998762 433331 1 3566677444 2 467888888875432 2233344444
Q ss_pred CcccccccccchH-HHHHHhcCCCCCHHHHHHHH----HHHHHhCCCCc-eEEEeEEEec-CC----CH-HHHHHHHHHH
Q 017200 232 GLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVL----MMAKDYVPAGT-LTKTSIMLGC-GE----TP-DQVVSTMEKV 299 (375)
Q Consensus 232 Gldv~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl----~~ak~~~p~Gl-~tkt~imvGl-GE----T~-ee~~etl~~L 299 (375)
+...+...+-+++ -+...++ .+.++.++.+ +.+++. |. ...+.+-+=| +| ++ +-+++.++.+
T Consensus 121 ~~~~v~i~~~~Sd~h~~~~l~---~t~ee~l~~~~~~v~~a~~~---~~~~~~~~~~v~f~~EDasR~d~~~l~~~~~~a 194 (552)
T PRK03739 121 KRAIVHLYNSTSPLQRRVVFG---KDRDGIKAIAVDGARLVKEL---AAKYPETEWRFEYSPESFTGTELDFALEVCDAV 194 (552)
T ss_pred CCCEEEEEEcCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHh---cccccCceeEEEEecccCCCCCHHHHHHHHHHH
Confidence 4445666667777 3444444 4566665554 455553 32 1234466666 77 65 4455666776
Q ss_pred HH---cCCcE
Q 017200 300 RA---AGVDV 306 (375)
Q Consensus 300 re---lgvd~ 306 (375)
.+ .+.+.
T Consensus 195 ~~~~~ag~~~ 204 (552)
T PRK03739 195 IDVWQPTPER 204 (552)
T ss_pred HHhhcCCCCc
Confidence 65 45553
|
|
| >cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family | Back alignment and domain information |
|---|
Probab=82.53 E-value=40 Score=31.01 Aligned_cols=168 Identities=15% Similarity=0.208 Sum_probs=101.4
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCC------hHHHHHHHH
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGN------NGCVREVAK 230 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~------~e~l~~L~~ 230 (375)
.+.+++.+.++.+.+.|++-++++-+ ++..++..-.. ..+.+.+......|. ...++...+
T Consensus 14 ~t~~~i~~~~~~a~~~~~~av~v~p~------------~v~~~~~~l~~-~~~~v~~~~~fp~g~~~~~~k~~eve~A~~ 80 (203)
T cd00959 14 ATEEDIRKLCDEAKEYGFAAVCVNPC------------FVPLAREALKG-SGVKVCTVIGFPLGATTTEVKVAEAREAIA 80 (203)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcHH------------HHHHHHHHcCC-CCcEEEEEEecCCCCCcHHHHHHHHHHHHH
Confidence 56789999999999999999987621 23333222111 236666544322221 223556666
Q ss_pred cCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC-CCHHHHHHHHHHHHHcCCcEEee
Q 017200 231 SGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 231 aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlG-ET~ee~~etl~~Lrelgvd~v~i 309 (375)
.|.|-+...+.. ..+. ...++..++-+..+.+... |+.++. |+..| -+++++....+...++|.|+|..
T Consensus 81 ~GAdevdvv~~~-----g~~~--~~~~~~~~~ei~~v~~~~~-g~~lkv--I~e~~~l~~~~i~~a~ria~e~GaD~IKT 150 (203)
T cd00959 81 DGADEIDMVINI-----GALK--SGDYEAVYEEIAAVVEACG-GAPLKV--ILETGLLTDEEIIKACEIAIEAGADFIKT 150 (203)
T ss_pred cCCCEEEEeecH-----HHHh--CCCHHHHHHHHHHHHHhcC-CCeEEE--EEecCCCCHHHHHHHHHHHHHhCCCEEEc
Confidence 777755432211 1122 3456777777888877665 577777 67774 45789999999999999999987
Q ss_pred ec-CCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccchhhhhhcchh
Q 017200 310 GQ-YMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKVV 359 (375)
Q Consensus 310 ~q-Yl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrssy~a~ 359 (375)
.. |. | .-.+++..+.+.+... -.....++| -+| +|..-
T Consensus 151 sTG~~-~--------~~at~~~v~~~~~~~~-~~v~ik~aG-Gik-t~~~~ 189 (203)
T cd00959 151 STGFG-P--------GGATVEDVKLMKEAVG-GRVGVKAAG-GIR-TLEDA 189 (203)
T ss_pred CCCCC-C--------CCCCHHHHHHHHHHhC-CCceEEEeC-CCC-CHHHH
Confidence 31 21 1 1145666677766654 234455777 555 44433
|
DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. |
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=81.95 E-value=7.3 Score=37.72 Aligned_cols=78 Identities=10% Similarity=0.157 Sum_probs=53.3
Q ss_pred hHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHH
Q 017200 222 NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVR 300 (375)
Q Consensus 222 ~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~ee~~etl~~Lr 300 (375)
.+.++.+.+.|++.+-.+--+.+- ..-+.+++.++++.+.+..+. +.-+|+|. +.+-+|.++..+..+
T Consensus 25 ~~~i~~l~~~Gv~gl~~~GstGE~-------~~Lt~~Er~~l~~~~~~~~~~----~~~vi~gv~~~st~~~i~~a~~a~ 93 (289)
T PF00701_consen 25 KRLIDFLIEAGVDGLVVLGSTGEF-------YSLTDEERKELLEIVVEAAAG----RVPVIAGVGANSTEEAIELARHAQ 93 (289)
T ss_dssp HHHHHHHHHTTSSEEEESSTTTTG-------GGS-HHHHHHHHHHHHHHHTT----SSEEEEEEESSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEECCCCccc-------ccCCHHHHHHHHHHHHHHccC----ceEEEecCcchhHHHHHHHHHHHh
Confidence 455666777887765332222221 134678889999988885433 45589999 679999999999999
Q ss_pred HcCCcEEeee
Q 017200 301 AAGVDVMTFG 310 (375)
Q Consensus 301 elgvd~v~i~ 310 (375)
++|+|.+-+.
T Consensus 94 ~~Gad~v~v~ 103 (289)
T PF00701_consen 94 DAGADAVLVI 103 (289)
T ss_dssp HTT-SEEEEE
T ss_pred hcCceEEEEe
Confidence 9999976553
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type | Back alignment and domain information |
|---|
Probab=81.86 E-value=10 Score=37.07 Aligned_cols=110 Identities=12% Similarity=0.120 Sum_probs=64.1
Q ss_pred CcchHHHHHHHHHhcCCcEEEEEeeeCCCC------CcccHHHHHHHHHHHHHhCCC-cEEEe-ecCCCC---CChH-HH
Q 017200 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDL------ADQGSGHFAQTVRKLKELKPN-MLIEA-LVPDFR---GNNG-CV 225 (375)
Q Consensus 158 d~eEi~~~a~al~~~G~~eIvLTsgdr~dl------~d~G~~~~~~lir~Ik~~~p~-i~Ie~-l~pd~~---g~~e-~l 225 (375)
+.+++...+..+.+.|++.|++.+||.+.. +.+.+++-.++|+.|++..+. ..|.+ ..|+-. .+.+ .+
T Consensus 72 ~~~~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~~~~d~ 151 (281)
T TIGR00677 72 PIEMIDDALERAYSNGIQNILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAESVELDL 151 (281)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCCCHHHHH
Confidence 346888888888999999999888886422 223456677899999876543 55553 444321 1222 23
Q ss_pred HHH---HHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec
Q 017200 226 REV---AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 285 (375)
Q Consensus 226 ~~L---~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl 285 (375)
+.| .++|+|.+- -+ .-++.+.+.+.++.+++ .|+ +.-||.|+
T Consensus 152 ~~L~~Ki~aGA~f~i----------TQ---~~Fd~~~~~~f~~~~~~---~gi--~~PIi~GI 196 (281)
T TIGR00677 152 KYLKEKVDAGADFII----------TQ---LFYDVDNFLKFVNDCRA---IGI--DCPIVPGI 196 (281)
T ss_pred HHHHHHHHcCCCEee----------cc---ceecHHHHHHHHHHHHH---cCC--CCCEEeec
Confidence 333 357777431 11 12445555566666666 332 23456666
|
This protein is an FAD-containing flavoprotein. |
| >cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain | Back alignment and domain information |
|---|
Probab=81.86 E-value=11 Score=31.91 Aligned_cols=67 Identities=15% Similarity=0.188 Sum_probs=44.5
Q ss_pred HHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC-CcEEEeecCCCCCChHHHHHHHHcCcccccc
Q 017200 164 NVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (375)
Q Consensus 164 ~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p-~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~h 238 (375)
+.++++.+.+.+.|+|.+.+... ...+.++++.+++..+ ++. ++.+.-. ..+..+.++++|+|.+=|
T Consensus 41 ~~~~~a~~~~~d~V~iS~~~~~~-----~~~~~~~~~~L~~~~~~~i~--i~~GG~~-~~~~~~~~~~~G~d~~~~ 108 (122)
T cd02071 41 EIVEAAIQEDVDVIGLSSLSGGH-----MTLFPEVIELLRELGAGDIL--VVGGGII-PPEDYELLKEMGVAEIFG 108 (122)
T ss_pred HHHHHHHHcCCCEEEEcccchhh-----HHHHHHHHHHHHhcCCCCCE--EEEECCC-CHHHHHHHHHCCCCEEEC
Confidence 34556668899999998875432 3456788888888744 333 3333211 356789999999987755
|
This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation. |
| >cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) | Back alignment and domain information |
|---|
Probab=81.27 E-value=16 Score=35.45 Aligned_cols=77 Identities=12% Similarity=0.136 Sum_probs=50.7
Q ss_pred hHHHHHHHHc-CcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHH
Q 017200 222 NGCVREVAKS-GLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKV 299 (375)
Q Consensus 222 ~e~l~~L~~a-Gldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~ee~~etl~~L 299 (375)
...++.+.+. |++.+-.+-.|.+- ..-+.+++.++++.+.+... | +..+|+|. +.+-+|.++..+..
T Consensus 24 ~~~i~~l~~~~Gv~gi~~~GstGE~-------~~Lt~~Er~~~~~~~~~~~~-~---~~~viagv~~~~~~~ai~~a~~a 92 (288)
T cd00954 24 RAIVDYLIEKQGVDGLYVNGSTGEG-------FLLSVEERKQIAEIVAEAAK-G---KVTLIAHVGSLNLKESQELAKHA 92 (288)
T ss_pred HHHHHHHHhcCCCCEEEECcCCcCc-------ccCCHHHHHHHHHHHHHHhC-C---CCeEEeccCCCCHHHHHHHHHHH
Confidence 4456666677 77665333222221 13457888888888777542 2 45788888 46788888888888
Q ss_pred HHcCCcEEee
Q 017200 300 RAAGVDVMTF 309 (375)
Q Consensus 300 relgvd~v~i 309 (375)
+++|.|.+-+
T Consensus 93 ~~~Gad~v~~ 102 (288)
T cd00954 93 EELGYDAISA 102 (288)
T ss_pred HHcCCCEEEE
Confidence 8888887655
|
It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. |
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=81.01 E-value=38 Score=32.73 Aligned_cols=47 Identities=6% Similarity=0.219 Sum_probs=23.1
Q ss_pred hHHHHHHHHcCcccccccccc---------hH-HHHHHhcCCCCCHHHHHHHHHHHHH
Q 017200 222 NGCVREVAKSGLNVFAHNIET---------VE-ELQSAVRDHRANFKQSLDVLMMAKD 269 (375)
Q Consensus 222 ~e~l~~L~~aGldv~~hnlEt---------v~-rl~~~mr~r~~s~~~~l~vl~~ak~ 269 (375)
.+.+..+.+.|+|.+..++-. .. .-.+.+. .+.+.++.++.++.+++
T Consensus 29 ~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~-~G~~~~~~~~~~~~~r~ 85 (258)
T PRK13111 29 LEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALA-AGVTLADVFELVREIRE 85 (258)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHH-cCCCHHHHHHHHHHHHh
Confidence 444555555566655444311 11 1223344 35566666666666663
|
|
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=80.86 E-value=23 Score=37.25 Aligned_cols=133 Identities=19% Similarity=0.261 Sum_probs=79.6
Q ss_pred hHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccc
Q 017200 161 EPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNI 240 (375)
Q Consensus 161 Ei~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnl 240 (375)
+..+.++++.+.|++.+++.+-+.. ...+.+.++.|++.+|++.|-+ ++.. +.+....+.++|+|.+..+.
T Consensus 228 ~~~e~a~~L~~agvdvivvD~a~g~------~~~vl~~i~~i~~~~p~~~vi~--g~v~-t~e~a~~l~~aGad~i~vg~ 298 (486)
T PRK05567 228 DNEERAEALVEAGVDVLVVDTAHGH------SEGVLDRVREIKAKYPDVQIIA--GNVA-TAEAARALIEAGADAVKVGI 298 (486)
T ss_pred chHHHHHHHHHhCCCEEEEECCCCc------chhHHHHHHHHHhhCCCCCEEE--eccC-CHHHHHHHHHcCCCEEEECC
Confidence 4588899999999997765543211 3457889999999887755432 3332 78899999999999985432
Q ss_pred c-chHHHHHHhcCC-CCCHHHHHHHHHHHHHhCCCCceEEEeEEE-ecCCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 241 E-TVEELQSAVRDH-RANFKQSLDVLMMAKDYVPAGTLTKTSIML-GCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 241 E-tv~rl~~~mr~r-~~s~~~~l~vl~~ak~~~p~Gl~tkt~imv-GlGET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
= .+....+.+..- ..+++--.++.+.+++ .|+ .+|. |=--|..|+...|. +|.+.+-+|..+
T Consensus 299 g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~---~~~----~viadGGi~~~~di~kAla----~GA~~v~~G~~~ 363 (486)
T PRK05567 299 GPGSICTTRIVAGVGVPQITAIADAAEAAKK---YGI----PVIADGGIRYSGDIAKALA----AGASAVMLGSML 363 (486)
T ss_pred CCCccccceeecCCCcCHHHHHHHHHHHhcc---CCC----eEEEcCCCCCHHHHHHHHH----hCCCEEEECccc
Confidence 0 010111111111 1123333333333333 233 3444 11257888887774 699999898776
|
|
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=80.66 E-value=35 Score=36.66 Aligned_cols=146 Identities=13% Similarity=0.077 Sum_probs=85.0
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCC-----------hHH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGN-----------NGC 224 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~-----------~e~ 224 (375)
..+..+|++.|+...+.|++++++.=.+..--...+-..+.++|++|.+.. .+.+. .+.-..+ .|.
T Consensus 263 ~~~~gdPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~-~ip~~--vGGGIr~~~d~~~~~~~~~e~ 339 (538)
T PLN02617 263 VRNLGKPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENV-FVPLT--VGGGIRDFTDANGRYYSSLEV 339 (538)
T ss_pred CCcCCCHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhC-CCCEE--EcCCccccccccccccchHHH
Confidence 467889999999999999999999855421000111234688898887643 22222 2211112 378
Q ss_pred HHHHHHcCcccccccccch---HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-ceEEEe--------------------
Q 017200 225 VREVAKSGLNVFAHNIETV---EELQSAVRDHRANFKQSLDVLMMAKDYVPAG-TLTKTS-------------------- 280 (375)
Q Consensus 225 l~~L~~aGldv~~hnlEtv---~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~G-l~tkt~-------------------- 280 (375)
++.+.++|+|.+..|-..+ ++.|..= ...+ -+.++.+.+.++.. +.+.-+
T Consensus 340 ~~~~l~~GadkV~i~s~Av~~~~~~~~~~--~~~~----p~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~ 413 (538)
T PLN02617 340 ASEYFRSGADKISIGSDAVYAAEEYIASG--VKTG----KTSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVT 413 (538)
T ss_pred HHHHHHcCCCEEEEChHHHhChhhhhccc--cccC----HHHHHHHHHHcCCceEEEEEecCcCcccCcccccccccccc
Confidence 9999999999988873222 2222110 1111 24444444444332 222222
Q ss_pred -------------EEE--ecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 281 -------------IML--GCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 281 -------------imv--GlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
+.+ |.-.|.-+.++.++.+.++|+..+-+.
T Consensus 414 ~~~~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gageil~t 458 (538)
T PLN02617 414 NPGPNGEEYAWYQCTVKGGREGRPIGAYELAKAVEELGAGEILLN 458 (538)
T ss_pred ccCcCcccceEEEEEEecCcccCCCCHHHHHHHHHhcCCCEEEEe
Confidence 111 112367788999999999999877663
|
|
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=80.64 E-value=12 Score=36.05 Aligned_cols=78 Identities=13% Similarity=0.156 Sum_probs=52.6
Q ss_pred hHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHH
Q 017200 222 NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVR 300 (375)
Q Consensus 222 ~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~ee~~etl~~Lr 300 (375)
.+.++.+.+.|++.+-.+=.|.+- ..-+.+++.++++.+.+.... +..+|+|. +.+.+|.++..+..+
T Consensus 21 ~~~i~~l~~~Gv~gi~~~GstGE~-------~~ls~~Er~~l~~~~~~~~~~----~~~vi~gv~~~~~~~~i~~a~~a~ 89 (281)
T cd00408 21 RRLVEFLIEAGVDGLVVLGTTGEA-------PTLTDEERKEVIEAVVEAVAG----RVPVIAGVGANSTREAIELARHAE 89 (281)
T ss_pred HHHHHHHHHcCCCEEEECCCCccc-------ccCCHHHHHHHHHHHHHHhCC----CCeEEEecCCccHHHHHHHHHHHH
Confidence 455666777777765433222221 134678888888888875432 45688888 568888888888888
Q ss_pred HcCCcEEeee
Q 017200 301 AAGVDVMTFG 310 (375)
Q Consensus 301 elgvd~v~i~ 310 (375)
++|+|.+-+.
T Consensus 90 ~~Gad~v~v~ 99 (281)
T cd00408 90 EAGADGVLVV 99 (281)
T ss_pred HcCCCEEEEC
Confidence 9998877663
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=80.52 E-value=46 Score=30.40 Aligned_cols=112 Identities=21% Similarity=0.275 Sum_probs=71.3
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.++++..+.++++.+.|++-|-|+-=+. + -.++++.+++..|.+.+..-+. + ..+.++...++|.|.+
T Consensus 21 ~~~~~~~~~~~~~~~~Gv~~vqlr~k~~----~-----~~e~~~~~~~~~~~~~~g~gtv-l--~~d~~~~A~~~gAdgv 88 (187)
T PRK07455 21 PDLELGLQMAEAVAAGGMRLIEITWNSD----Q-----PAELISQLREKLPECIIGTGTI-L--TLEDLEEAIAAGAQFC 88 (187)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCC----C-----HHHHHHHHHHhCCCcEEeEEEE-E--cHHHHHHHHHcCCCEE
Confidence 3688999999999999999998883211 1 2355666666667655543111 1 4578999999999866
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
... ..+ .++++.++. .|+ ..+.| -.|.+|+.+.. +.|.|++.|+
T Consensus 89 ~~p--------------~~~----~~~~~~~~~---~~~----~~i~G-~~t~~e~~~A~----~~Gadyv~~F 132 (187)
T PRK07455 89 FTP--------------HVD----PELIEAAVA---QDI----PIIPG-ALTPTEIVTAW----QAGASCVKVF 132 (187)
T ss_pred ECC--------------CCC----HHHHHHHHH---cCC----CEEcC-cCCHHHHHHHH----HCCCCEEEEC
Confidence 211 111 122222333 123 35677 57888877665 4899999984
|
|
| >PRK02506 dihydroorotate dehydrogenase 1A; Reviewed | Back alignment and domain information |
|---|
Probab=80.43 E-value=30 Score=34.16 Aligned_cols=187 Identities=13% Similarity=0.142 Sum_probs=103.2
Q ss_pred HHHhcCCcEEEEEeeeCC---------------------CCCcccHHHHHHHHHHHHHhCCCcE-EEeecCCCCC-ChHH
Q 017200 168 AIASWGLDYVVITSVDRD---------------------DLADQGSGHFAQTVRKLKELKPNML-IEALVPDFRG-NNGC 224 (375)
Q Consensus 168 al~~~G~~eIvLTsgdr~---------------------dl~d~G~~~~~~lir~Ik~~~p~i~-Ie~l~pd~~g-~~e~ 224 (375)
++...|+..|++=+.... .++..|.+.|.+.++.+++..++.. |-.+.+.-.+ ..+.
T Consensus 31 ~~~~~g~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~n~g~~~~~~~i~~~~~~~~~~pvI~Si~G~~~~~~~~~ 110 (310)
T PRK02506 31 EVEASAAGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLPNLGFDYYLDYVLELQKKGPNKPHFLSVVGLSPEETHTI 110 (310)
T ss_pred HHHHcCCcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCCCcCHHHHHHHHHHHHhhcCCCCEEEEEEeCcHHHHHHH
Confidence 466778888877666311 2334567888888888876644332 2122221100 2455
Q ss_pred HHHHHHcC-cccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcC
Q 017200 225 VREVAKSG-LNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAG 303 (375)
Q Consensus 225 l~~L~~aG-ldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelg 303 (375)
++.+.++| +|.+..|+..-+ + +.-+.-+.+.+...++++.+++....=+.+|-+-- -+..++.+.+..+.+.+
T Consensus 111 a~~~~~~g~ad~iElN~ScPn-~-~~~~~~g~d~~~~~~i~~~v~~~~~~Pv~vKlsp~----~~~~~~a~~~~~~~~~g 184 (310)
T PRK02506 111 LKKIQASDFNGLVELNLSCPN-V-PGKPQIAYDFETTEQILEEVFTYFTKPLGVKLPPY----FDIVHFDQAAAIFNKFP 184 (310)
T ss_pred HHHHhhcCCCCEEEEECCCCC-C-CCccccccCHHHHHHHHHHHHHhcCCccEEecCCC----CCHHHHHHHHHHhCcCc
Confidence 66666777 888888775432 1 01111234678888888888874311022333322 26677887777777888
Q ss_pred CcEEeeecC----C--CCCCCCCCcc-----------ccCCHHHHHHHHHHHHHh--hhhhhccchhhhhhcchhHHH
Q 017200 304 VDVMTFGQY----M--RPSKRHMPVS-----------EYITPEAFERYRALGMEM--GFRYVASGPMVRSSYKVVGWC 362 (375)
Q Consensus 304 vd~v~i~qY----l--~P~~~~~~v~-----------~~v~pe~~~~l~~~a~~~--gf~~~~sgp~vrssy~a~~~~ 362 (375)
++.+...+= + .+.. ..++. ..++|-..+...++.... .+...++| -|.|...|-|++
T Consensus 185 ~~~i~~~nt~~~~~~iD~~~-~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipIig~G-GI~s~~da~e~i 260 (310)
T PRK02506 185 LAFVNCINSIGNGLVIDPED-ETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLNPSIQIIGTG-GVKTGRDAFEHI 260 (310)
T ss_pred eEEEEEeccCCCceEEecCC-CCccccCCCCCCcCCchhccHHHHHHHHHHHHhcCCCCCEEEEC-CCCCHHHHHHHH
Confidence 876655431 1 1100 11110 225566677777777766 36666777 666555444443
|
|
| >TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain | Back alignment and domain information |
|---|
Probab=80.37 E-value=17 Score=31.54 Aligned_cols=69 Identities=13% Similarity=0.074 Sum_probs=45.1
Q ss_pred HHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccc
Q 017200 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (375)
Q Consensus 163 ~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~h 238 (375)
.+.++++.+.+.+-|+|+|-+... ...+.++++.|++..+. .+.++.+... ..+..+.++++|+|.+=|
T Consensus 43 e~~v~aa~e~~adii~iSsl~~~~-----~~~~~~~~~~L~~~g~~-~i~vivGG~~-~~~~~~~l~~~Gvd~~~~ 111 (132)
T TIGR00640 43 EEIARQAVEADVHVVGVSSLAGGH-----LTLVPALRKELDKLGRP-DILVVVGGVI-PPQDFDELKEMGVAEIFG 111 (132)
T ss_pred HHHHHHHHHcCCCEEEEcCchhhh-----HHHHHHHHHHHHhcCCC-CCEEEEeCCC-ChHhHHHHHHCCCCEEEC
Confidence 345566678899999998865332 34577888888886542 2333444222 345678899999987644
|
Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2. |
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.26 E-value=31 Score=33.21 Aligned_cols=163 Identities=12% Similarity=0.195 Sum_probs=91.7
Q ss_pred CcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccc
Q 017200 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFA 237 (375)
Q Consensus 158 d~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~ 237 (375)
.-+.|...|+...+.|++.++|.=-+.- ..++.. =.+++++|.+..+ +.|++- +.. .+.+.++.+.++|++++-
T Consensus 29 y~~~P~~~a~~~~~~Ga~~lHlVDLdgA--~~g~~~-n~~~i~~i~~~~~-~~vQvG-GGI-Rs~~~v~~ll~~G~~rVi 102 (241)
T COG0106 29 YSDDPLEVAKKWSDQGAEWLHLVDLDGA--KAGGPR-NLEAIKEILEATD-VPVQVG-GGI-RSLEDVEALLDAGVARVI 102 (241)
T ss_pred ecCCHHHHHHHHHHcCCcEEEEeecccc--ccCCcc-cHHHHHHHHHhCC-CCEEee-CCc-CCHHHHHHHHHCCCCEEE
Confidence 3468999999999999999998733321 112111 2466777766553 444422 222 278999999999999876
Q ss_pred ccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe------EEEec-CCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 238 HNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS------IMLGC-GETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 238 hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~------imvGl-GET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
.+-=. +. + .+.++.+.+.+|..+.+.-+ -+=|- -.|.-+..+.++.+.+.|+..+-+.
T Consensus 103 iGt~a-------v~-------~-p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~ii~T 167 (241)
T COG0106 103 IGTAA-------VK-------N-PDLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLAHILYT 167 (241)
T ss_pred Eecce-------ec-------C-HHHHHHHHHHcCCcEEEEEEccCCccccccccccccCCHHHHHHHHHhcCCCeEEEE
Confidence 54111 11 1 12222222223322222211 22233 3455578889999999999887775
Q ss_pred cCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccc
Q 017200 311 QYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASG 349 (375)
Q Consensus 311 qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sg 349 (375)
.-.+- ++ ...--++.+++++........+||
T Consensus 168 dI~~D---Gt-----l~G~n~~l~~~l~~~~~ipviaSG 198 (241)
T COG0106 168 DISRD---GT-----LSGPNVDLVKELAEAVDIPVIASG 198 (241)
T ss_pred ecccc---cc-----cCCCCHHHHHHHHHHhCcCEEEec
Confidence 33322 21 111225556666666666666666
|
|
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.16 E-value=6.3 Score=41.80 Aligned_cols=74 Identities=16% Similarity=0.169 Sum_probs=54.2
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCC-cEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN-MLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~-i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
..+++....++++.+.|++.|+|++-+.. ..+..+.|+.|++.+|. +.|-+ +... +.+..+.+.++|+|.
T Consensus 238 v~~~~~~~ra~~Lv~aGvd~i~vd~a~g~------~~~~~~~i~~ir~~~~~~~~V~a--GnV~-t~e~a~~li~aGAd~ 308 (502)
T PRK07107 238 INTRDYAERVPALVEAGADVLCIDSSEGY------SEWQKRTLDWIREKYGDSVKVGA--GNVV-DREGFRYLAEAGADF 308 (502)
T ss_pred cChhhHHHHHHHHHHhCCCeEeecCcccc------cHHHHHHHHHHHHhCCCCceEEe--cccc-CHHHHHHHHHcCCCE
Confidence 45567788999999999999998733221 34568999999998874 44433 2221 678899999999998
Q ss_pred cccc
Q 017200 236 FAHN 239 (375)
Q Consensus 236 ~~hn 239 (375)
+-.+
T Consensus 309 I~vg 312 (502)
T PRK07107 309 VKVG 312 (502)
T ss_pred EEEC
Confidence 7444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 375 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-10 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.0 bits (147), Expect = 3e-10
Identities = 51/421 (12%), Positives = 118/421 (28%), Gaps = 134/421 (31%)
Query: 42 LRARLASES--PAL--SDFIDLQSNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKK 97
L + + +E P++ +I+ Q + Y+ K + + + Y+++++
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIE-QRDRLYNDNQVFAKYNVSRLQ----------PYLKLRQ 142
Query: 98 KLRELK------LH------------TVCEEAK---CPNLGECW-SGGETGTATATIMIL 135
L EL+ + VC K + W + + + +L
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202
Query: 136 GDTCTR-GCRFCNVKTSRAPPPPDPDEPTNVAEA-----IASWG-------LDYV----- 177
+ + SR+ + + +A + S L V
Sbjct: 203 QKLLYQIDPNWT----SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 178 ----------VITSVDR---DDLADQGSGH------------------FAQTVR-KLKEL 205
++T+ + D L+ + H + + + ++L
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 206 KPNM---------LIEALVPDF--RGNNGCVREVAKSGLNVFAHNIE-TVEELQSAVRDH 253
+ +I + D +N + V L IE ++ L+ A ++
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDN--WKHVNCDKLT---TIIESSLNVLEPA--EY 371
Query: 254 RANFKQSLDVLMMAKD-YVPAGTLTKTSIMLGCG---ETPDQVVSTMEKVRAAGVDVMTF 309
R F + L V ++P L+ ++ VV+ + K
Sbjct: 372 RKMFDR-LSVFP--PSAHIPTILLS----LIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 310 -----GQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKVVGWCYY 364
Y+ K + + + Y F P Y + +
Sbjct: 425 TISIPSIYLE-LKVKLENEYALHRSIVDHYNIP---KTFDSDDLIPPYLDQY----FYSH 476
Query: 365 L 365
+
Sbjct: 477 I 477
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 375 | |||
| 3t7v_A | 350 | Methylornithine synthase PYLB; TIM-barrel fold, mu | 99.94 | |
| 3iix_A | 348 | Biotin synthetase, putative; adoMet radical, SAM r | 99.91 | |
| 2qgq_A | 304 | Protein TM_1862; alpha-beta protein, structural ge | 99.91 | |
| 1r30_A | 369 | Biotin synthase; SAM radical protein, TIM barrel, | 99.89 | |
| 1olt_A | 457 | Oxygen-independent coproporphyrinogen III oxidase; | 99.74 | |
| 1tv8_A | 340 | MOAA, molybdenum cofactor biosynthesis protein A; | 99.62 | |
| 3c8f_A | 245 | Pyruvate formate-lyase 1-activating enzyme; adoMet | 99.55 | |
| 2yx0_A | 342 | Radical SAM enzyme; predicted tRNA modification en | 99.48 | |
| 2z2u_A | 311 | UPF0026 protein MJ0257; metal binding protein; 2.4 | 99.32 | |
| 2a5h_A | 416 | L-lysine 2,3-aminomutase; radical SAM, four-iron-f | 99.13 | |
| 3rfa_A | 404 | Ribosomal RNA large subunit methyltransferase N; r | 99.09 | |
| 3can_A | 182 | Pyruvate-formate lyase-activating enzyme; structur | 98.3 | |
| 2cw6_A | 298 | Hydroxymethylglutaryl-COA lyase, mitochondrial; HM | 97.86 | |
| 4fhd_A | 368 | Spore photoproduct lyase; partial TIM-barrel, DNA | 97.64 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 97.63 | |
| 1ydo_A | 307 | HMG-COA lyase; TIM-barrel protein, structural geno | 97.61 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 97.61 | |
| 3ble_A | 337 | Citramalate synthase from leptospira interrogans; | 97.12 | |
| 3eeg_A | 325 | 2-isopropylmalate synthase; 11106D, beta barrel, P | 96.86 | |
| 3ewb_X | 293 | 2-isopropylmalate synthase; LEUA, structural genom | 96.82 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 96.61 | |
| 3ivs_A | 423 | Homocitrate synthase, mitochondrial; TIM barrel, m | 96.41 | |
| 3rmj_A | 370 | 2-isopropylmalate synthase; LEUA, truncation, neis | 96.05 | |
| 1rqb_A | 539 | Transcarboxylase 5S subunit; TIM-barrel, carbamyla | 96.03 | |
| 2nx9_A | 464 | Oxaloacetate decarboxylase 2, subunit alpha; carbo | 95.95 | |
| 2ztj_A | 382 | Homocitrate synthase; (beta/alpha)8 TIM barrel, su | 95.39 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 94.56 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 94.13 | |
| 1aj0_A | 282 | DHPS, dihydropteroate synthase; antibiotic, resist | 93.56 | |
| 3dxi_A | 320 | Putative aldolase; TIM barrel, 11107N, PSI2, NYSGX | 92.65 | |
| 1eye_A | 280 | DHPS 1, dihydropteroate synthase I; alpha-beta bar | 92.38 | |
| 3no5_A | 275 | Uncharacterized protein; PFAM DUF849 domain contai | 91.99 | |
| 2yci_X | 271 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 91.81 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 91.28 | |
| 2y7e_A | 282 | 3-keto-5-aminohexanoate cleavage enzyme; lyase, al | 90.89 | |
| 2dqw_A | 294 | Dihydropteroate synthase; dimer, structural genomi | 90.5 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 90.43 | |
| 3chv_A | 284 | Prokaryotic domain of unknown function (DUF849) W | 90.38 | |
| 2vp8_A | 318 | Dihydropteroate synthase 2; RV1207 transferase, fo | 90.34 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 90.23 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 89.67 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 89.46 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 88.93 | |
| 3lot_A | 314 | Uncharacterized protein; protein of unknown functi | 87.95 | |
| 3bg3_A | 718 | Pyruvate carboxylase, mitochondrial; TIM barrel, A | 87.66 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 86.92 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 86.62 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 86.39 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 86.35 | |
| 3tr9_A | 314 | Dihydropteroate synthase; biosynthesis of cofactor | 86.02 | |
| 2wje_A | 247 | CPS4B, tyrosine-protein phosphatase CPSB; capsule | 85.95 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 85.45 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 85.15 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 84.99 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 84.92 | |
| 3apt_A | 310 | Methylenetetrahydrofolate reductase; TIM barrel, o | 84.91 | |
| 3fst_A | 304 | 5,10-methylenetetrahydrofolate reductase; TIM barr | 84.48 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 84.22 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 83.99 | |
| 2y5s_A | 294 | DHPS, dihydropteroate synthase; transferase, folat | 83.93 | |
| 1tx2_A | 297 | DHPS, dihydropteroate synthase; folate biosynthesi | 83.92 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 83.89 | |
| 3hq1_A | 644 | 2-isopropylmalate synthase; LEUA, mycobacterium tu | 83.64 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 83.6 | |
| 3e49_A | 311 | Uncharacterized protein DUF849 with A TIM barrel; | 83.17 | |
| 4eiv_A | 297 | Deoxyribose-phosphate aldolase; chemotherapy, brai | 82.85 | |
| 3e96_A | 316 | Dihydrodipicolinate synthase; structural genomics, | 82.34 | |
| 3e02_A | 311 | Uncharacterized protein DUF849; structural genomic | 80.32 |
| >3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.6e-26 Score=222.70 Aligned_cols=219 Identities=16% Similarity=0.238 Sum_probs=172.2
Q ss_pred cHHHHHHHHhc---cChhhhhhhcCCCCcccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCCCCC--CCCcchHHHH
Q 017200 91 KYVQIKKKLRE---LKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPP--PPDPDEPTNV 165 (375)
Q Consensus 91 ~~~~~~~~l~~---~~L~tvceeA~cpn~~ec~~~~~~~~~tatfm~i~d~C~~~C~FC~v~~~r~~~--~ld~eEi~~~ 165 (375)
+..++..+|.. ..+..+++.|+-.+.. .+|+. -...+++.++++|+.+|.||+++...... .++++|+++.
T Consensus 24 ~~~e~~~l~~~~~~~~~~~L~~~A~~~r~~-~~g~~---v~~~~~i~~t~~C~~~C~fC~~~~~~~~~~~~ls~eei~~~ 99 (350)
T 3t7v_A 24 TDNDLRTLLSLESKEGLERLYSAARKVRDH-YFGNR---VFLNCFIYFSTYCKNQCSFCYYNCRNEINRYRLTMEEIKET 99 (350)
T ss_dssp CHHHHHHHHTCCSHHHHHHHHHHHHHHHHH-HHTTE---EEEEEEEEEECCCCCCCTTCTTCTTSCCCCCBCCHHHHHHH
T ss_pred CHHHHHHHhcCCChhHHHHHHHHHHHHHHH-HCCCE---EEEEEeeecCCCcCCCCCcCCCcCcCCCCceeCCHHHHHHH
Confidence 35667777764 3466777777643332 22321 11233466899999999999998754222 3899999999
Q ss_pred HHHHHhcCCcEEEEEeeeCCCCC-cccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccch-
Q 017200 166 AEAIASWGLDYVVITSVDRDDLA-DQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV- 243 (375)
Q Consensus 166 a~al~~~G~~eIvLTsgdr~dl~-d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv- 243 (375)
++.+.+.|+++|+|+||+.+.+. + .+++.++++.|++.++ +.+++..+.. +.+.++.|+++|++.+.+++|+.
T Consensus 100 ~~~~~~~G~~~i~l~gGe~p~~~~~--~~~~~~l~~~ik~~~~-i~i~~s~g~~--~~e~l~~L~~aG~~~i~i~lEt~~ 174 (350)
T 3t7v_A 100 CKTLKGAGFHMVDLTMGEDPYYYED--PNRFVELVQIVKEELG-LPIMISPGLM--DNATLLKAREKGANFLALYQETYD 174 (350)
T ss_dssp HHHHTTSCCSEEEEEECCCHHHHHS--THHHHHHHHHHHHHHC-SCEEEECSSC--CHHHHHHHHHTTEEEEECCCBCSC
T ss_pred HHHHHHCCCCEEEEeeCCCCccccC--HHHHHHHHHHHHhhcC-ceEEEeCCCC--CHHHHHHHHHcCCCEEEEeeecCC
Confidence 99999999999999999865432 2 5678999999997764 6776543333 78999999999999999999987
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCcc
Q 017200 244 EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVS 323 (375)
Q Consensus 244 ~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~ 323 (375)
+++|+.|+ +++++++++++++.+++. |+.+++++|+|+|||.+|+.++++++++++++.++|.+|. | .+++|+.
T Consensus 175 ~~~~~~i~-~~~~~~~~l~~i~~a~~~---Gi~v~~~~i~Glget~e~~~~~l~~l~~l~~~~v~~~~f~-p-~~gT~l~ 248 (350)
T 3t7v_A 175 TELYRKLR-VGQSFDGRVNARRFAKQQ---GYCVEDGILTGVGNDIESTILSLRGMSTNDPDMVRVMTFL-P-QEGTPLE 248 (350)
T ss_dssp HHHHHHHS-TTCCHHHHHHHHHHHHHH---TCEEEEEEEESSSCCHHHHHHHHHHHHHTCCSEEEEEECC-C-CTTSTTT
T ss_pred HHHHHHhC-CCCCHHHHHHHHHHHHHc---CCeEccceEeecCCCHHHHHHHHHHHHhCCCCEEEeccee-e-CCCCcCc
Confidence 69999999 589999999999999994 7999999999999999999999999999999999997765 5 2355554
Q ss_pred c
Q 017200 324 E 324 (375)
Q Consensus 324 ~ 324 (375)
+
T Consensus 249 ~ 249 (350)
T 3t7v_A 249 G 249 (350)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-23 Score=203.06 Aligned_cols=228 Identities=17% Similarity=0.284 Sum_probs=177.0
Q ss_pred cHHHHHHHHhccC---hhhhhhhcCCCCcccccCCCCCCccEEE---EeeeCCccCCCCcCCCCCCCCCC-C--CCCcch
Q 017200 91 KYVQIKKKLRELK---LHTVCEEAKCPNLGECWSGGETGTATAT---IMILGDTCTRGCRFCNVKTSRAP-P--PPDPDE 161 (375)
Q Consensus 91 ~~~~~~~~l~~~~---L~tvceeA~cpn~~ec~~~~~~~~~tat---fm~i~d~C~~~C~FC~v~~~r~~-~--~ld~eE 161 (375)
+..++..+|...+ +..+++.|+-.+.. .+|+ .++ ++.++++|+.+|.||.+....+. . .++++|
T Consensus 16 ~~~e~~~ll~~~~~~~~~~l~~~A~~ir~~-~~g~------~v~~~~~i~~t~~C~~~C~fC~~~~~~~~~~~~~ls~ee 88 (348)
T 3iix_A 16 TREVLKEALSINDRGFNEALFKLADEIRRK-YVGD------EVHIRAIIEFSNVCRKNCLYCGLRRDNKNLKRYRMTPEE 88 (348)
T ss_dssp CHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-HHCS------EEEEEEEEEEECCCSCCCTTCTTCTTCCSSCCCBCCHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-HcCC------EEEEEEEeEecCCcCCcCccCCCCCCCCCcCceeCCHHH
Confidence 4566777776543 55566666543332 2332 333 36679999999999998875422 1 379999
Q ss_pred HHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccccc
Q 017200 162 PTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIE 241 (375)
Q Consensus 162 i~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlE 241 (375)
+++.++.+.+.|+++|+|+||..+.+. .+++.++++.|++. ++.|.+..+.. +.+.++.|+++|++.+.+++|
T Consensus 89 i~~~i~~~~~~g~~~i~~~gGe~p~~~---~~~~~~li~~i~~~--~~~i~~s~g~l--~~e~l~~L~~ag~~~v~i~le 161 (348)
T 3iix_A 89 IVERARLAVQFGAKTIVLQSGEDPYXM---PDVISDIVKEIKKM--GVAVTLSLGEW--PREYYEKWKEAGADRYLLRHE 161 (348)
T ss_dssp HHHHHHHHHHTTCSEEEEEESCCGGGT---THHHHHHHHHHHTT--SCEEEEECCCC--CHHHHHHHHHHTCCEEECCCB
T ss_pred HHHHHHHHHHCCCCEEEEEeCCCCCcc---HHHHHHHHHHHHhc--CceEEEecCCC--CHHHHHHHHHhCCCEEeeeee
Confidence 999999999999999999999855443 46799999999876 67777544444 789999999999999999999
Q ss_pred ch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCC
Q 017200 242 TV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRH 319 (375)
Q Consensus 242 tv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~ 319 (375)
+. +++++.++ ++.+++++++.++.+++ .|+.+++++|+|+ |||.+++.++++++++++++.+.+.+|. |. .+
T Consensus 162 t~~~~~~~~i~-~~~~~~~~~~~i~~~~~---~Gi~v~~~~i~G~p~et~e~~~~~~~~l~~l~~~~i~i~~~~-p~-~g 235 (348)
T 3iix_A 162 TANPVLHRKLR-PDTSFENRLNCLLTLKE---LGYETGAGSMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFI-PH-PD 235 (348)
T ss_dssp CSCHHHHHHHS-TTSCHHHHHHHHHHHHH---TTCEEEECBEESCTTCCHHHHHHHHHHHHHHTCSEECCEECC-CC-TT
T ss_pred eCCHHHHHHhC-CCcCHHHHHHHHHHHHH---hCCeeccceEEeCCCCCHHHHHHHHHHHHhcCCCEEeeeeee-cC-CC
Confidence 87 69999999 56799999999999999 5899999999999 9999999999999999999999997764 52 35
Q ss_pred CCcccc--CCHHHHHHHHHHH
Q 017200 320 MPVSEY--ITPEAFERYRALG 338 (375)
Q Consensus 320 ~~v~~~--v~pe~~~~l~~~a 338 (375)
+++.+. .+++++..+..++
T Consensus 236 t~l~~~~~~~~~e~~~~~a~~ 256 (348)
T 3iix_A 236 TPLANEKKGDFTLTLKMVALT 256 (348)
T ss_dssp STTTTSCCCCHHHHHHHHHHH
T ss_pred CCcccCCCCCHHHHHHHHHHH
Confidence 565543 3344444444333
|
| >2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-23 Score=203.43 Aligned_cols=213 Identities=17% Similarity=0.290 Sum_probs=152.4
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCC-CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcc--cHHHHHHHHHHHHHh
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQ--GSGHFAQTVRKLKEL 205 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~-~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~--G~~~~~~lir~Ik~~ 205 (375)
+..|+.++++|+.+|+||.++..+++ ..++++++++.++.+.+.|+++|+|+|++-..+..+ +..++.++++.|++.
T Consensus 4 ~~~~v~is~GC~~~C~fC~~~~~~g~~r~r~~e~i~~ei~~l~~~G~~ei~l~g~~~~~yG~~~~~~~~l~~Ll~~l~~~ 83 (304)
T 2qgq_A 4 PYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLNSL 83 (304)
T ss_dssp SEEEEESBCCC-------------CCCCBCCHHHHHHHHHHHHHTTCCEEEEECTTGGGTTHHHHSSCCHHHHHHHHHTS
T ss_pred EEEEEEECCCCCCcCccCCccccCCCceeeCHHHHHHHHHHHHHCCCcEEEEEeEcccccCCCCCcHHHHHHHHHHHHhc
Confidence 67889999999999999999986543 358999999999999999999999999764333110 124588999999875
Q ss_pred CCCc-EEEe--ecCCCCCChHHHHHHHHcC--cccccccccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEE
Q 017200 206 KPNM-LIEA--LVPDFRGNNGCVREVAKSG--LNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKT 279 (375)
Q Consensus 206 ~p~i-~Ie~--l~pd~~g~~e~l~~L~~aG--ldv~~hnlEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt 279 (375)
+++ .+.. ..|+.. +++.++.|+++| ++.+..++|+ .+++++.|+ |+++++++++.++.+++.+| |+.+.+
T Consensus 84 -~gi~~ir~~~~~p~~l-~~e~l~~l~~~g~~~~~l~i~lqs~s~~vl~~m~-r~~t~e~~~~~i~~l~~~~~-gi~i~~ 159 (304)
T 2qgq_A 84 -NGEFWIRVMYLHPDHL-TEEIISAMLELDKVVKYFDVPVQHGSDKILKLMG-RTKSSEELKKMLSSIRERFP-DAVLRT 159 (304)
T ss_dssp -SSSCEEEECCCCGGGC-CHHHHHHHHHCTTBCCEEECCCBCSCHHHHHHTT-CCSCHHHHHHHHHHHHHHCT-TCEEEE
T ss_pred -CCCcEEEEeeeecccC-CHHHHHHHHhCCCCccEEEEecccCCHHHHHHhC-CCCCHHHHHHHHHHHHhhCC-CCEEEE
Confidence 444 4554 345544 789999999999 8889999996 569999999 89999999999999999866 489999
Q ss_pred eEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCCccccCCH----HHHHHHHHHHHHhhhhh
Q 017200 280 SIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYITP----EAFERYRALGMEMGFRY 345 (375)
Q Consensus 280 ~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~v~~~v~p----e~~~~l~~~a~~~gf~~ 345 (375)
++|+|| |||++|+.++++++++++++.+.+++|+ +|++....+...+.+ ++++.+.+++.++...+
T Consensus 160 ~~IvG~PgEt~ed~~~t~~~l~~l~~~~v~~~~~~p~pgT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~ 231 (304)
T 2qgq_A 160 SIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLKEKVDPEMAKRRQEELLLLQAEISNSR 231 (304)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECCC-----------CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeeCCCCChhHhCcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 9999999999999999999999999886 443332222233443 45666777776655544
|
| >1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=3.7e-22 Score=197.67 Aligned_cols=231 Identities=14% Similarity=0.211 Sum_probs=171.0
Q ss_pred HHHHHHhccChhhhhhhcCCCCcccccCCCCCCccEEEEeee-CCccCCCCcCCCCCCCC--C-C--CCCCcchHHHHHH
Q 017200 94 QIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMIL-GDTCTRGCRFCNVKTSR--A-P--PPPDPDEPTNVAE 167 (375)
Q Consensus 94 ~~~~~l~~~~L~tvceeA~cpn~~ec~~~~~~~~~tatfm~i-~d~C~~~C~FC~v~~~r--~-~--~~ld~eEi~~~a~ 167 (375)
++..+++ ..+..+++.|.-.+...+.++. -...+++.+ +++|+.+|.||.++... + + ..++++|+++.++
T Consensus 34 e~~~l~~-~~~~~L~~~A~~~~~~~~~~~~---v~~~~~i~i~t~~C~~~C~yC~~~~~~~~~~~~~~~~s~eei~~~~~ 109 (369)
T 1r30_A 34 QVTELFE-KPLLDLLFEAQQVHRQHFDPRQ---VQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESAR 109 (369)
T ss_dssp TTHHHHH-SCHHHHHHHHHHHHHHHSCTTC---CEEEEEEEEECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHHH
T ss_pred HHHHHHh-ccHHHHHHHHHHHHHHhcCCCE---EEEEEEEEEECCCCcccCccCCCCCcCCCCCcccccCCHHHHHHHHH
Confidence 3444444 4566666666544443221221 113444554 99999999999998631 1 1 2379999999999
Q ss_pred HHHhcCCcEEEEEeeeC-CCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccchHHH
Q 017200 168 AIASWGLDYVVITSVDR-DDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEEL 246 (375)
Q Consensus 168 al~~~G~~eIvLTsgdr-~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~rl 246 (375)
.+.+.|++.|+|+|+.. +.. ...+++.++++.|++. ++.|. +++... +.+.++.|+++|+|.+.+++|+.+++
T Consensus 110 ~~~~~g~~~i~~~gg~~~p~~--~~~~~l~~ll~~ik~~--g~~i~-~t~G~l-~~e~l~~L~~aGvd~v~i~les~~e~ 183 (369)
T 1r30_A 110 KAKAAGSTRFCMGAAWKNPHE--RDMPYLEQMVQGVKAM--GLEAC-MTLGTL-SESQAQRLANAGLDYYNHNLDTSPEF 183 (369)
T ss_dssp HHHHTTCSEEEEEECCSSCCT--TTHHHHHHHHHHHHHT--TSEEE-EECSSC-CHHHHHHHHHHCCCEEECCCBSCHHH
T ss_pred HHHHcCCcEEEEEeCCCCCCc--CCHHHHHHHHHHHHHc--CCeEE-EecCCC-CHHHHHHHHHCCCCEEeecCcCCHHH
Confidence 99999999999998752 221 2267899999999986 34554 355443 78999999999999999999997799
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcC--CcEEeeecCCCCCCCCCCccc
Q 017200 247 QSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAG--VDVMTFGQYMRPSKRHMPVSE 324 (375)
Q Consensus 247 ~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelg--vd~v~i~qYl~P~~~~~~v~~ 324 (375)
|+.++ ++++++++++.++.+++. |+.+++++|+|+|||.+|+.++++++++++ ++.+++..| .|. .++++.+
T Consensus 184 ~~~i~-~~~~~~~~l~~i~~a~~~---Gi~v~~~~I~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~l-~p~-~gT~l~~ 257 (369)
T 1r30_A 184 YGNII-TTRTYQERLDTLEKVRDA---GIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINML-VKV-KGTPLAD 257 (369)
T ss_dssp HHHHC-CSSCHHHHHHHHHHHHHH---HCEEECCEEECSSCCHHHHHHHHHHHHSSSSCCSEEEEEEC-CCC-TTSTTSS
T ss_pred HHHhC-CCCCHHHHHHHHHHHHHc---CCeeeeeeEeeCCCCHHHHHHHHHHHHhhcCCCCEEEeeee-eec-CCCcCCC
Confidence 99999 689999999999999994 789999999999999999999999999998 889998655 452 3455543
Q ss_pred --cCCHHHHHHHHHHHHH
Q 017200 325 --YITPEAFERYRALGME 340 (375)
Q Consensus 325 --~v~pe~~~~l~~~a~~ 340 (375)
.++++++.++..+++.
T Consensus 258 ~~~~~~~~~~~~~~~~r~ 275 (369)
T 1r30_A 258 NDDVDAFDFIRTIAVARI 275 (369)
T ss_dssp CCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 2345555555444443
|
| >1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=3.1e-17 Score=167.14 Aligned_cols=218 Identities=15% Similarity=0.229 Sum_probs=160.4
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCC-CC---CCCcchHHHHHHHHHhc----CCcEEEEEeeeCCCCCcccHHHHHHHHH
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRA-PP---PPDPDEPTNVAEAIASW----GLDYVVITSVDRDDLADQGSGHFAQTVR 200 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~-~~---~ld~eEi~~~a~al~~~----G~~eIvLTsgdr~dl~d~G~~~~~~lir 200 (375)
...|+.+. .|+.+|.||.+..... .. ....+.+.++++.+.+. ++..|.++||+...++ .+++.++++
T Consensus 53 ~~lYihIp-fC~~~C~yC~~~~~~~~~~~~~~~~~~~l~~Ei~~~~~~~~~~~i~~i~fgGGtpt~l~---~~~l~~ll~ 128 (457)
T 1olt_A 53 LSLYVHIP-FCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLN---KAQISRLMK 128 (457)
T ss_dssp EEEEEEEC-EESSCCTTCCSSCEECSCTHHHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEESCGGGSC---HHHHHHHHH
T ss_pred eEEEEEcC-CCCCCCCCCCCceeccCCcchHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCCcccCC---HHHHHHHHH
Confidence 45566665 6999999999986421 11 12356677777666544 4678888887643333 567899999
Q ss_pred HHHHhCC-----CcEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC
Q 017200 201 KLKELKP-----NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAG 274 (375)
Q Consensus 201 ~Ik~~~p-----~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~G 274 (375)
.|++.++ .+.++ ..|+.. +.+.++.|+++|++.+.+++|+. +++++.|+ |++++++.++.++.+++ .|
T Consensus 129 ~i~~~~~~~~~~eitie-~~p~~l-~~e~l~~L~~~G~~rislGvQS~~~~~l~~i~-R~~~~~~~~~ai~~~r~---~G 202 (457)
T 1olt_A 129 LLRENFQFNADAEISIE-VDPREI-ELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVN-REQDEEFIFALLNHARE---IG 202 (457)
T ss_dssp HHHHHSCEEEEEEEEEE-ECSSSC-CTHHHHHHHHTTCCEEEEEEECCCHHHHHHHT-CCCCHHHHHHHHHHHHH---TT
T ss_pred HHHHhCCCCCCcEEEEE-EccCcC-CHHHHHHHHHcCCCEEEEeeccCCHHHHHHhC-CCCCHHHHHHHHHHHHH---cC
Confidence 9988654 23443 356644 78999999999999999999986 59999999 89999999999999999 57
Q ss_pred ce-EEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCC-c-ccc--CCHH----HHHHHHHHHHHhhh
Q 017200 275 TL-TKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMP-V-SEY--ITPE----AFERYRALGMEMGF 343 (375)
Q Consensus 275 l~-tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~-v-~~~--v~pe----~~~~l~~~a~~~gf 343 (375)
+. +++++|+|+ |||.+++.++++.+.+++++.+.+.+|. .|..+... . .+. ..++ .++.+.+...+.||
T Consensus 203 ~~~v~~dlI~GlPget~e~~~~tl~~~~~l~~~~i~~y~l~~~p~t~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy 282 (457)
T 1olt_A 203 FTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLTQSGY 282 (457)
T ss_dssp CCSCEEEEEESCTTCCHHHHHHHHHHHHHHCCSEEEEEECCCCTTTSGGGGGSCGGGSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCcEEEEEEcCCCCCCHHHHHHHHHHHHhcCcCEEEeecCcCCcCchhHhhccccCCCcCHHHHHHHHHHHHHHHHHCCC
Confidence 87 999999999 9999999999999999999999998886 44322111 1 111 1222 24444556667888
Q ss_pred hhhccchhhhhhc
Q 017200 344 RYVASGPMVRSSY 356 (375)
Q Consensus 344 ~~~~sgp~vrssy 356 (375)
.......++|..+
T Consensus 283 ~~yeis~fa~~~~ 295 (457)
T 1olt_A 283 QFIGMDHFARPDD 295 (457)
T ss_dssp EEEETTEEECTTS
T ss_pred eEEEechhcCCCc
Confidence 8777777777544
|
| >1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-14 Score=141.18 Aligned_cols=172 Identities=17% Similarity=0.268 Sum_probs=133.4
Q ss_pred EeeeCCccCCCCcCCCCCC----CC----CCCCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHH
Q 017200 132 IMILGDTCTRGCRFCNVKT----SR----APPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLK 203 (375)
Q Consensus 132 fm~i~d~C~~~C~FC~v~~----~r----~~~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik 203 (375)
.+.++++|+.+|.||.... .. ....++.+++.+.++.+.+.|++.|.||||+.--.++ +.++++.++
T Consensus 17 ~i~~T~~CNl~C~yC~~~~~~~~~~~~~~~~~~ls~e~i~~~i~~~~~~g~~~i~~tGGEPll~~~-----l~~li~~~~ 91 (340)
T 1tv8_A 17 RLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRD-----LDVLIAKLN 91 (340)
T ss_dssp EEECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHTTCCEEEEESSCGGGSTT-----HHHHHHHHT
T ss_pred EEEeCCCcCCcCCCCCcCcccCCCcccCCccCCCCHHHHHHHHHHHHHCCCCEEEEeCCCccchhh-----HHHHHHHHH
Confidence 3557999999999998865 11 1123899999999999999999999999986322232 678888887
Q ss_pred HhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCC-CHHHHHHHHHHHHHhCCCCceEEEeE
Q 017200 204 ELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRA-NFKQSLDVLMMAKDYVPAGTLTKTSI 281 (375)
Q Consensus 204 ~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~-s~~~~l~vl~~ak~~~p~Gl~tkt~i 281 (375)
+......+.+.+-... ..+.++.|+++|++.+...+++. ++.++.++ ++. ++++.++.++.+++ .|+.++.++
T Consensus 92 ~~~~~~~i~i~TNG~l-l~~~~~~L~~~g~~~v~iSld~~~~~~~~~i~-~~~~~~~~v~~~i~~l~~---~g~~v~i~~ 166 (340)
T 1tv8_A 92 QIDGIEDIGLTTNGLL-LKKHGQKLYDAGLRRINVSLDAIDDTLFQSIN-NRNIKATTILEQIDYATS---IGLNVKVNV 166 (340)
T ss_dssp TCTTCCEEEEEECSTT-HHHHHHHHHHHTCCEEEEECCCSSHHHHHHHH-SSCCCHHHHHHHHHHHHH---TTCEEEEEE
T ss_pred hCCCCCeEEEEeCccc-hHHHHHHHHHCCCCEEEEecCCCCHHHHHHhh-CCCCCHHHHHHHHHHHHH---CCCCEEEEE
Confidence 6533124554442211 25688999999999999999986 58999999 566 99999999999999 578888888
Q ss_pred EEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCC
Q 017200 282 MLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRP 315 (375)
Q Consensus 282 mvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P 315 (375)
++.-|++++|+.+.++++++++++ +.+.+|+ |
T Consensus 167 vv~~g~n~~ei~~~~~~~~~~g~~-~~~i~~~-p 198 (340)
T 1tv8_A 167 VIQKGINDDQIIPMLEYFKDKHIE-IRFIEFM-D 198 (340)
T ss_dssp EECTTTTGGGHHHHHHHHHHTTCC-EEEEECC-C
T ss_pred EEeCCCCHHHHHHHHHHHHhcCCe-EEEEEee-E
Confidence 885599999999999999999998 3443554 5
|
| >3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=6.8e-14 Score=128.04 Aligned_cols=204 Identities=11% Similarity=0.145 Sum_probs=144.2
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCC---CCCCCcchHHHHHHHHHhc---CCcEEEEEeeeCCCCCcccHHHHHHHHHHH
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRA---PPPPDPDEPTNVAEAIASW---GLDYVVITSVDRDDLADQGSGHFAQTVRKL 202 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~---~~~ld~eEi~~~a~al~~~---G~~eIvLTsgdr~dl~d~G~~~~~~lir~I 202 (375)
..++ +++++|+.+|.||..+.... ...++++++++.++.+.+. ++..|.|+||+- -+. .+.+.++++.+
T Consensus 20 ~~~~-i~t~~Cn~~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~GGEP-~l~---~~~l~~l~~~~ 94 (245)
T 3c8f_A 20 IRFI-TFFQGCLMRCLYCHNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEA-ILQ---AEFVRDWFRAC 94 (245)
T ss_dssp EEEE-EEESCCSCCCTTCSCGGGCCTTCSEEECHHHHHHHHGGGHHHHTSTTCEEEEEESCG-GGG---HHHHHHHHHHH
T ss_pred cEEE-EEeCCCCCCCCCCCCchhcccccCccCCHHHHHHHHHHhhhhhcCCCCeEEEECCCc-CCC---HHHHHHHHHHH
Confidence 4444 46789999999999874321 1237889999988877664 478999999763 221 34467899999
Q ss_pred HHhCCCcEEEeecCCCCC-ChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017200 203 KELKPNMLIEALVPDFRG-NNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (375)
Q Consensus 203 k~~~p~i~Ie~l~pd~~g-~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~ 280 (375)
++. ++.+.+.+-.+.- +.+.++.+++. +|.+..++++. ++.++++++ .++++.++.++.+++. |+.+...
T Consensus 95 ~~~--~~~i~i~Tng~~~~~~~~~~~l~~~-~~~v~isld~~~~~~~~~~~~--~~~~~~~~~i~~l~~~---g~~v~i~ 166 (245)
T 3c8f_A 95 KKE--GIHTCLDTNGFVRRYDPVIDELLEV-TDLVMLDLKQMNDEIHQNLVG--VSNHRTLEFAKYLANK---NVKVWIR 166 (245)
T ss_dssp HTT--TCCEEEEECCCCCCCCHHHHHHHHT-CSEEEEECCCSSHHHHHHHHS--SCSHHHHHHHHHHHHH---TCCEEEE
T ss_pred HHc--CCcEEEEeCCCcCcCHHHHHHHHHh-CCEEEEeCCCCCHHHhhhccC--CCHHHHHHHHHHHHhc---CCEEEEE
Confidence 875 4555554422211 46778888887 88899999985 699999983 4579999999999985 4544444
Q ss_pred --EEEecCCCHHHHHHHHHHHHHcCC-cEEeeecCCCCCC-------CCCCcc--ccCCHHHHHHHHHHHHHhhhhh
Q 017200 281 --IMLGCGETPDQVVSTMEKVRAAGV-DVMTFGQYMRPSK-------RHMPVS--EYITPEAFERYRALGMEMGFRY 345 (375)
Q Consensus 281 --imvGlGET~ee~~etl~~Lrelgv-d~v~i~qYl~P~~-------~~~~v~--~~v~pe~~~~l~~~a~~~gf~~ 345 (375)
++-|++++.+++.++++++++++. +.+.+.+|.+... +..+.. ...++++.+++.+++.+.||..
T Consensus 167 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v 243 (245)
T 3c8f_A 167 YVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGILEQYGHKV 243 (245)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHHCCEEEEEEEECCCCSHHHHHHTTCCCTTTTCCCCCHHHHHHHHHHHHTTTCCB
T ss_pred EeecCCCCCCHHHHHHHHHHHHhcCCCceeEEEeccccChhHHHhhCcccccccCCCCCHHHHHHHHHHHHhcCCee
Confidence 444556889999999999999995 7888877653211 111221 2345678888888888888864
|
| >2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.48 E-value=9.6e-13 Score=128.49 Aligned_cols=205 Identities=15% Similarity=0.104 Sum_probs=141.9
Q ss_pred CccCCCCcCCCCCCCC------CCCCCCcchHHHHHHHHHh------cC--------------CcEEEEE-eeeCCCCCc
Q 017200 137 DTCTRGCRFCNVKTSR------APPPPDPDEPTNVAEAIAS------WG--------------LDYVVIT-SVDRDDLAD 189 (375)
Q Consensus 137 d~C~~~C~FC~v~~~r------~~~~ld~eEi~~~a~al~~------~G--------------~~eIvLT-sgdr~dl~d 189 (375)
++|+.+|.||..+... ....++++|+++.+..... .| ++.|+|+ ||+.--.+
T Consensus 79 ~gCnl~C~fC~~~~~~~~~~~~~~~~~~~eei~~~i~~~~~~~~~~~~g~~~v~~~~~~e~~~~~~v~~sggGEPll~~- 157 (342)
T 2yx0_A 79 AWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNPTHAAISLSGEPMLYP- 157 (342)
T ss_dssp SCCSBCCTTCCCSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHHHHTSCCEEEECSSSCGGGST-
T ss_pred hhhhCcCcccCCCCCCCcccccccCcCCHHHHHHHHHHHHHHHhhccCCCcccchhhhhhccCCCEEEEcCCCcccchh-
Confidence 7999999999986431 1123788888877655432 13 5789998 55422112
Q ss_pred ccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcC--cccccccccch-HHHHHHhcCC--CCCHHHHHHHH
Q 017200 190 QGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSG--LNVFAHNIETV-EELQSAVRDH--RANFKQSLDVL 264 (375)
Q Consensus 190 ~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aG--ldv~~hnlEtv-~rl~~~mr~r--~~s~~~~l~vl 264 (375)
.+.++++.+++. ++.+.+.+-.. .++.++.|+++| ++.+...+++. +++++.+++. +.++++.++.+
T Consensus 158 ----~l~~ll~~~~~~--g~~i~l~TNG~--~~e~l~~L~~~g~~~~~l~isld~~~~e~~~~i~~~~~~~~~~~~~~~i 229 (342)
T 2yx0_A 158 ----YMGDLVEEFHKR--GFTTFIVTNGT--IPERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWERILRFL 229 (342)
T ss_dssp ----THHHHHHHHHHT--TCEEEEEECSC--CHHHHHHHHHTTCCCSEEEEEECCSSHHHHHHHHCBSSSCHHHHHHHHH
T ss_pred ----hHHHHHHHHHHC--CCcEEEEcCCC--cHHHHHHHHhcCCCCCEEEEEccCCCHHHHHHHhCCCcccHHHHHHHHH
Confidence 377888888775 56666655433 277899999988 89999999986 6999999832 57899999999
Q ss_pred HHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCc--cccCCHHHHHHHHHHHHHh-
Q 017200 265 MMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPV--SEYITPEAFERYRALGMEM- 341 (375)
Q Consensus 265 ~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v--~~~v~pe~~~~l~~~a~~~- 341 (375)
+.+++ .|+.+...+++.-|++++++.+.++.+++++++.+.+..|........+. ....+++++.++.+...+.
T Consensus 230 ~~l~~---~g~~v~i~~~l~~g~n~~~~~~l~~~l~~~~~~~i~l~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~l~~~l 306 (342)
T 2yx0_A 230 ELMRD---LPTRTVVRLTLVKGENMHSPEKYAKLILKARPMFVEAKAYMFVGYSRNRLTINNMPSHQDIREFAEALVKHL 306 (342)
T ss_dssp HHHTT---CSSEEEEEEEECTTTTCCCHHHHHHHHHHHCCSEEEEEECC------CCCCGGGSCCHHHHHHHHHHHHTTC
T ss_pred HHHHh---CCCCEEEEEEEECCccHHHHHHHHHHHHHcCCCEEEEEeeeecCCCcccccccCCCCHHHHHHHHHHHHHhc
Confidence 99988 47888888888669999999999999999999999887775321111222 2234566666666655543
Q ss_pred -hhhhhccchhhh
Q 017200 342 -GFRYVASGPMVR 353 (375)
Q Consensus 342 -gf~~~~sgp~vr 353 (375)
++.....+|..|
T Consensus 307 ~~~~I~~~~~~~~ 319 (342)
T 2yx0_A 307 PGYHIEDEYEPSR 319 (342)
T ss_dssp TTEEEEEEEGGGT
T ss_pred cCCceeeccccce
Confidence 444433444433
|
| >2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.7e-12 Score=122.32 Aligned_cols=203 Identities=12% Similarity=0.152 Sum_probs=122.6
Q ss_pred eeeC-CccCCCCcCCCCCCCC----------CCCCCCcchHHHHHHHHHh---------------------cCCcEEEEE
Q 017200 133 MILG-DTCTRGCRFCNVKTSR----------APPPPDPDEPTNVAEAIAS---------------------WGLDYVVIT 180 (375)
Q Consensus 133 m~i~-d~C~~~C~FC~v~~~r----------~~~~ld~eEi~~~a~al~~---------------------~G~~eIvLT 180 (375)
+.++ ++|+.+|.||..+... ....++++|+++.+....+ ..+++|+|+
T Consensus 55 i~~t~~~Cn~~C~fC~~~~~~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~~~~~~~g~~~v~~~~r~~~~~~~~~i~~s 134 (311)
T 2z2u_A 55 CTPSVIWCQQNCIFCWRVLPRDIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKFKEALEPKHVAIS 134 (311)
T ss_dssp EESCSSCCSCC----------------CCSCCCCCCCHHHHHHHHHHHHHHHHHGGGGGHHHHCHHHHHHHTSCCEEEEC
T ss_pred eccChhHHhCcCcccCCCCCCcccccccccCccccCCHHHHHHHHHHHHHHHhhccCCCcCcchhhhhhhccCCCEEEEe
Confidence 4457 7999999999966421 1234788998876654421 125789999
Q ss_pred -eeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCC--CC
Q 017200 181 -SVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHR--AN 256 (375)
Q Consensus 181 -sgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~--~s 256 (375)
||+.--.+ ++.++++.+++. ++.+.+.+-.. .++.++.| |++.+.+.+++. ++++++++ +. .+
T Consensus 135 ~gGEPll~~-----~l~~li~~~~~~--g~~~~l~TNG~--~~~~l~~L---~~~~v~isld~~~~~~~~~i~-~~~~~~ 201 (311)
T 2z2u_A 135 LSGEPTLYP-----YLDELIKIFHKN--GFTTFVVSNGI--LTDVIEKI---EPTQLYISLDAYDLDSYRRIC-GGKKEY 201 (311)
T ss_dssp SSSCGGGST-----THHHHHHHHHHT--TCEEEEEECSC--CHHHHHHC---CCSEEEEECCCSSTTTC-----CCCHHH
T ss_pred CCcCccchh-----hHHHHHHHHHHC--CCcEEEECCCC--CHHHHHhC---CCCEEEEEeecCCHHHHHHHh-CCccch
Confidence 55422112 377888888775 56666655433 24555544 788899999986 58999998 44 67
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCC-CCC-CCCccccCCHHHHHHH
Q 017200 257 FKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRP-SKR-HMPVSEYITPEAFERY 334 (375)
Q Consensus 257 ~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P-~~~-~~~v~~~v~pe~~~~l 334 (375)
+++.++.++.+++ .| .+...+++.-|+++ |+.+.++++++++++.+.+.+|++- ..+ .+......+++++..+
T Consensus 202 ~~~v~~~i~~l~~---~g-~v~i~~~~~~g~n~-~~~~~~~~~~~~~~~~i~l~~~~p~g~~~~~~~~~~~~~~~e~~~~ 276 (311)
T 2z2u_A 202 WESILNTLDILKE---KK-RTCIRTTLIRGYND-DILKFVELYERADVHFIELKSYMHVGYSQKRLKKEDMLQHDEILKL 276 (311)
T ss_dssp HHHHHHHHHHHTT---SS-SEEEEEEECTTTTC-CGGGTHHHHHHHTCSEEEEEECC------------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHh---cC-CEEEEEEEECCcch-hHHHHHHHHHHcCCCEEEEEeeEEccccccccccccCCCHHHHHHH
Confidence 9999999999988 45 55555555457777 8999999999999999999878632 111 1222234567766666
Q ss_pred HHHHHH-hhhhhhccchhhh
Q 017200 335 RALGME-MGFRYVASGPMVR 353 (375)
Q Consensus 335 ~~~a~~-~gf~~~~sgp~vr 353 (375)
.....+ .|+.+....|..|
T Consensus 277 ~~~l~~~~g~~~~~~~~~~~ 296 (311)
T 2z2u_A 277 AKMLDENSSYKLIDDSEDSR 296 (311)
T ss_dssp HHHHHTSSSEEEEEEEGGGT
T ss_pred HHHHHHhcCceEEeccCcce
Confidence 555544 6877664445444
|
| >2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.6e-09 Score=109.25 Aligned_cols=162 Identities=15% Similarity=0.209 Sum_probs=115.4
Q ss_pred EEeeeCCccCCCCcCCCCCCCCC-C-CCCCcchHHHHHHHHHh-cCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC
Q 017200 131 TIMILGDTCTRGCRFCNVKTSRA-P-PPPDPDEPTNVAEAIAS-WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (375)
Q Consensus 131 tfm~i~d~C~~~C~FC~v~~~r~-~-~~ld~eEi~~~a~al~~-~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p 207 (375)
..+.++++|+.+|+||......+ . ..++.+++.+.++.+.+ .|+++|+||||+---.+| ..+.++++.+++. +
T Consensus 117 v~l~vT~~Cnl~C~yC~~~~~~~~~~~~ls~eei~~~i~~i~~~~gi~~V~ltGGEPll~~d---~~L~~il~~l~~~-~ 192 (416)
T 2a5h_A 117 VLLLITDMCSMYCRHCTRRRFAGQSDDSMPMERIDKAIDYIRNTPQVRDVLLSGGDALLVSD---ETLEYIIAKLREI-P 192 (416)
T ss_dssp EEEEEESCCSSCCTTCTTTTTTTSSSSBCCHHHHHHHHHHHHTCTTCCEEEEEESCTTSSCH---HHHHHHHHHHHTS-T
T ss_pred EEEecCCCccccCcCCCCcccCCCccCCCCHHHHHHHHHHHHhcCCCcEEEEECCCCCCCCH---HHHHHHHHHHHhc-C
Confidence 34556899999999998765322 2 24889999999999988 799999999987433332 3477888888764 4
Q ss_pred Cc-EEEeec------CCCCCChHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017200 208 NM-LIEALV------PDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (375)
Q Consensus 208 ~i-~Ie~l~------pd~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~ 280 (375)
++ .|.+.+ |... +.+.++.|+++ +.+..++++... +.+ + ++.++.++.+++ .|+.+...
T Consensus 193 ~v~~i~i~Tng~~~~p~~i-t~e~l~~L~~~--~~v~Isl~~~~~--~ei-----~-~~v~~ai~~L~~---aGi~v~i~ 258 (416)
T 2a5h_A 193 HVEIVRIGSRTPVVLPQRI-TPELVNMLKKY--HPVWLNTHFNHP--NEI-----T-EESTRACQLLAD---AGVPLGNQ 258 (416)
T ss_dssp TCCEEEEECSHHHHCGGGC-CHHHHHHHGGG--CSEEEEECCCSG--GGC-----C-HHHHHHHHHHHH---TTCCEEEE
T ss_pred CccEEEEEecccccccccC-CHHHHHHHHhc--CcEEEEEecCCH--HHH-----h-HHHHHHHHHHHH---cCCEEEEE
Confidence 33 343322 2222 67889999887 556666654321 122 2 788999999998 46766555
Q ss_pred EEE--ecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 281 IML--GCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 281 imv--GlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
.++ |+.++.+++.+.++.+.++|++...+.
T Consensus 259 ~vll~GvNd~~e~l~~l~~~l~~lgv~~~~i~ 290 (416)
T 2a5h_A 259 SVLLRGVNDCVHVMKELVNKLVKIRVRPYYIY 290 (416)
T ss_dssp EECCTTTTCSHHHHHHHHHHHHHTTEEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHcCCceEEEe
Confidence 444 888999999999999999999876553
|
| >3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.5e-09 Score=109.28 Aligned_cols=201 Identities=10% Similarity=0.120 Sum_probs=136.4
Q ss_pred eCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHh----------cCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHH
Q 017200 135 LGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIAS----------WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKE 204 (375)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~----------~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~ 204 (375)
.+.+|+.+|.||.-........++++||++.+..+.. .+++.|+++|+--|-+- .+.+.++++.+++
T Consensus 121 sq~GCnl~C~fC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~g~~gg~~i~~Ivf~GgGEPLln---~d~v~~~i~~lk~ 197 (404)
T 3rfa_A 121 SQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLN---LNNVVPAMEIMLD 197 (404)
T ss_dssp CEEECSSCCTTCGGGTTCEEEECCHHHHHHHHHHHHHHHCCHHHHSSCSCSEEEECSSSCGGGC---HHHHHHHHHHHHS
T ss_pred eCCCCCCcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHhhhcccccCCCccEEEEeCCCCcccC---HHHHHHHHHHHHh
Confidence 3679999999998764321224899999998876643 25789999964223221 4567888888876
Q ss_pred hCCCc-----EEEeecCCCCCChHHHHHHHHcCcccccccccchH-HHHHHhcC--CCCCHHHHHHHHHHHHHhCCC---
Q 017200 205 LKPNM-----LIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRD--HRANFKQSLDVLMMAKDYVPA--- 273 (375)
Q Consensus 205 ~~p~i-----~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~mr~--r~~s~~~~l~vl~~ak~~~p~--- 273 (375)
.. ++ .|.+.+-.+ .+.++.|.+.+...++..+.+.+ ++++++.+ ++++.++.++.++...+....
T Consensus 198 ~~-Gl~~s~r~itlsTnG~---~p~i~~L~~~~d~~LaiSLka~d~e~~~~i~pv~~~~~le~vl~ai~~~~~~~g~~~~ 273 (404)
T 3rfa_A 198 DF-GFGLSKRRVTLSTSGV---VPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQG 273 (404)
T ss_dssp TT-TTCCCGGGEEEEESCC---HHHHHHHHHHCCCEEEEECCCSSHHHHHHHSGGGGTSCHHHHHHHHHHHHHHCTTTTT
T ss_pred hc-CcCcCCCceEEECCCc---HHHHHHHHHhhcceEEecccCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCCcc
Confidence 32 34 555555333 35678888875445667777654 88888874 378899999999655432211
Q ss_pred CceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 274 GTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 274 Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
.+.+.+-+|=|+.++++|+.+..++++++++ .|.+.+|. |.. .... +...+++.+.+.++..+.|+...
T Consensus 274 ~V~ie~vLI~GvNDs~e~~~~La~ll~~l~~-~VnLIpyn-P~~-~~~~-~~ps~e~i~~f~~iL~~~Gi~vt 342 (404)
T 3rfa_A 274 RVTIEYVMLDHVNDGTEHAHQLAELLKDTPC-KINLIPWN-PFP-GAPY-GRSSNSRIDRFSKVLMSYGFTTI 342 (404)
T ss_dssp CEEEEEEEBTTTTCSHHHHHHHHHHTTTSCE-EEEEEECC-CCT-TCCC-CBCCHHHHHHHHHHHHHTTCEEE
T ss_pred cEEEEEEEecCCCCCHHHHHHHHHHHHcCCC-cEEEEecc-CCC-CCCC-CCCCHHHHHHHHHHHHHcCCcEE
Confidence 2455666666889999999999999999875 45555553 422 2222 23467889999999999888553
|
| >3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=98.30 E-value=8.4e-06 Score=71.78 Aligned_cols=161 Identities=7% Similarity=0.074 Sum_probs=111.7
Q ss_pred cEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCC
Q 017200 175 DYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDH 253 (375)
Q Consensus 175 ~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r 253 (375)
..|+||||+.--. .+.+.++++.+++. ++.+.+.+-.+. ..+.++.|.+. +|.+...+++. ++.+.++++
T Consensus 5 ~~v~~tGGEPll~----~~~~~~l~~~~~~~--g~~~~l~TNG~l-~~~~~~~l~~~-~d~v~isld~~~~~~~~~~~g- 75 (182)
T 3can_A 5 GGVTFCGGEPLLH----PEFLIDILKRCGQQ--GIHRAVDTTLLA-RKETVDEVMRN-CELLLIDLKSMDSTVHQTFCD- 75 (182)
T ss_dssp CCEEECSSTGGGS----HHHHHHHHHHHHHT--TCCEEEECTTCC-CHHHHHHHHHT-CSEEEEECCCSCHHHHHHHHS-
T ss_pred CEEEEEcccccCC----HHHHHHHHHHHHHC--CCcEEEECCCCC-CHHHHHHHHhh-CCEEEEECCCCCHHHHHHHhC-
Confidence 5789999863211 22235888888874 466666654443 57888888887 88888888876 688999983
Q ss_pred CCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHc-CC-cEEeeecCCCCCCCC--------CCcc
Q 017200 254 RANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAA-GV-DVMTFGQYMRPSKRH--------MPVS 323 (375)
Q Consensus 254 ~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrel-gv-d~v~i~qYl~P~~~~--------~~v~ 323 (375)
.+++..++.++.+++.... +.+.+.++=|+.++.+++.+.+++++++ ++ ..+.+.+|. |..+. .++.
T Consensus 76 -~~~~~i~~~i~~l~~~g~~-v~i~~~v~~~~n~n~~~~~~~~~~~~~~~g~~~~~~l~~~~-p~g~~~~~~l~~~y~~~ 152 (182)
T 3can_A 76 -VPNELILKNIRRVAEADFP-YYIRIPLIEGVNADEKNIKLSAEFLASLPRHPEIINLLPYH-DIGKGKHAKLGSIYNPK 152 (182)
T ss_dssp -SCSHHHHHHHHHHHHTTCC-EEEEEEECBTTTCSHHHHHHHHHHHHHSSSCCSEEEEEECC-C----------------
T ss_pred -CCHHHHHHHHHHHHhCCCe-EEEEEEEECCCCCCHHHHHHHHHHHHhCcCccceEEEecCc-ccCHHHHHHhCCcCccc
Confidence 4579999999999884222 3455555667778999999999999999 98 888887665 52211 1121
Q ss_pred c--cCCHHH--HHHHHHHHHHhhhhhhc
Q 017200 324 E--YITPEA--FERYRALGMEMGFRYVA 347 (375)
Q Consensus 324 ~--~v~pe~--~~~l~~~a~~~gf~~~~ 347 (375)
. ..++++ .+.+.+++.+.|+.++.
T Consensus 153 ~~~~~~~e~~~l~~~~~~~~~~g~~~~i 180 (182)
T 3can_A 153 GYKMQTPSEEVQQQCIQILTDYGLKATI 180 (182)
T ss_dssp --CCBCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCceEe
Confidence 1 234566 89999999999987654
|
| >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=5.8e-05 Score=72.45 Aligned_cols=145 Identities=14% Similarity=0.195 Sum_probs=105.5
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCC-CCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD-LADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLN 234 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~d-l~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (375)
.++.++.++.++++.+.|+++|-+++...+. .|- .....++++.+++ .|++.+.++.+ +.+.++...++|+|
T Consensus 23 ~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~--~~d~~~~~~~~~~-~~~~~~~~l~~----~~~~i~~a~~ag~~ 95 (298)
T 2cw6_A 23 IVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQ--MGDHTEVLKGIQK-FPGINYPVLTP----NLKGFEAAVAAGAK 95 (298)
T ss_dssp CCCHHHHHHHHHHHHHTTCSEECCEECCCTTTCGG--GTTHHHHHHHSCC-CTTCBCCEECC----SHHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHHHHHHcCcCEEEECCCcCcccccc--cCCHHHHHHHHhh-CCCCEEEEEcC----CHHhHHHHHHCCCC
Confidence 4889999999999999999999999875543 231 1123456666655 46777666664 56789999999999
Q ss_pred cccccccchH-HHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC-C-----CHHHHHHHHHHHHHcCCcE
Q 017200 235 VFAHNIETVE-ELQSAVRD-HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-E-----TPDQVVSTMEKVRAAGVDV 306 (375)
Q Consensus 235 v~~hnlEtv~-rl~~~mr~-r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlG-E-----T~ee~~etl~~Lrelgvd~ 306 (375)
.+....-+++ .....++. +...++...+.++.+++ .|+.+..+++.-+| | +.+++.+.++.+.++|++.
T Consensus 96 ~v~i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~---~G~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~ 172 (298)
T 2cw6_A 96 EVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQS---ANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMGCYE 172 (298)
T ss_dssp EEEEEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHH---TTCEEEEEEETTTCBTTTBSCCHHHHHHHHHHHHHTTCSE
T ss_pred EEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH---CCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcCCCE
Confidence 9888766666 44455541 12233455556677777 57888888886652 3 6889999999999999999
Q ss_pred Eeee
Q 017200 307 MTFG 310 (375)
Q Consensus 307 v~i~ 310 (375)
|.+.
T Consensus 173 i~l~ 176 (298)
T 2cw6_A 173 ISLG 176 (298)
T ss_dssp EEEE
T ss_pred EEec
Confidence 9885
|
| >4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=9.7e-05 Score=73.30 Aligned_cols=163 Identities=11% Similarity=0.109 Sum_probs=95.4
Q ss_pred EeeeCCccCCCCcCCCCCCC-C-CCC---CCCcchHHHHHHH-HHhcCCc-EEEEEeeeCCCCCccc-HHHHHHHHHHHH
Q 017200 132 IMILGDTCTRGCRFCNVKTS-R-APP---PPDPDEPTNVAEA-IASWGLD-YVVITSVDRDDLADQG-SGHFAQTVRKLK 203 (375)
Q Consensus 132 fm~i~d~C~~~C~FC~v~~~-r-~~~---~ld~eEi~~~a~a-l~~~G~~-eIvLTsgdr~dl~d~G-~~~~~~lir~Ik 203 (375)
.+....||..+|.||-.... + .+. ..+.+|+++.++. +.+.+-+ .++-+|.+.|-++-.. ....-++|+.+.
T Consensus 110 ~ln~y~GC~~~C~YCYl~~~~~~~~~I~v~vN~~eiL~~l~~~l~~~~~~~~~i~~g~~TDpyp~E~~~~ltr~~le~l~ 189 (368)
T 4fhd_A 110 AIPLATGCMGHCHYCYLQTTLGSKPYIRVYVNLDDIFAQAQKYINERAPEITRFEAACTSDIVGIDHLTHSLKKAIEFIG 189 (368)
T ss_dssp ECCSEEBCSCCCTTCTHHHHTTTCCSEEEECCHHHHHHHHHHHHHHHTTSCEEEESCSSBCHHHHHTTTCHHHHHHHHHH
T ss_pred eeCCccCCCCCCceEeccccCCCCCeEEEecCHHHHHHHHHHHHhhcCCCceEEEEEcCCCcchhhHHHhHHHHHHHHHH
Confidence 35567899999999987642 1 121 2577888887654 4443333 3445555544443111 112335555554
Q ss_pred HhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEE
Q 017200 204 ELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIML 283 (375)
Q Consensus 204 ~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imv 283 (375)
+ ++...+++.+=.- +.+.|..+...|.-.+...+-+ +++.+.+-|+..+.+++|++++.+++ +|+.|...|.=
T Consensus 190 ~-~~~~~v~i~TKs~--lid~L~~l~~~~~v~V~~Sitt-~~l~r~~EP~aps~~~RL~Ai~~l~~---aGipv~v~iaP 262 (368)
T 4fhd_A 190 A-TDYGRLRFVTKYE--HVDHLLDARHNGKTRFRFSINS-RYVINHFEPGTSSFDGRLAAARKVAG---AGYKLGFVVAP 262 (368)
T ss_dssp H-CSSEEEEEEESCC--CCGGGTTCCCTTCEEEEEEECC-HHHHHHHCTTSCCHHHHHHHHHHHHH---TTCEEEEEEEE
T ss_pred h-CCCceEEEEeCCc--CHHHHHhcCcCCceEEEEEEcC-HHHHHHcCCCCCCHHHHHHHHHHHHH---CCCeEEEEEeC
Confidence 4 4556666665321 1122322322232233333433 68888888888899999999999999 68765554443
Q ss_pred ec-CCCH-HHHHHHHHHHHH
Q 017200 284 GC-GETP-DQVVSTMEKVRA 301 (375)
Q Consensus 284 Gl-GET~-ee~~etl~~Lre 301 (375)
=+ ++++ ++..+.++.|.+
T Consensus 263 IiP~~~~~e~y~~lle~l~~ 282 (368)
T 4fhd_A 263 IYRHEGWERGYFELFQELAR 282 (368)
T ss_dssp ECCCTTHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHH
Confidence 35 7776 466666765554
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0005 Score=66.03 Aligned_cols=142 Identities=20% Similarity=0.291 Sum_probs=103.7
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCC-CCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD-LADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLN 234 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~d-l~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (375)
.++.++.+..++++.+.|+++|-+.+...+. .+- .....++++.+.+ .+++.+.++.+ +.+.++...++|.+
T Consensus 26 ~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~~~--~~d~~~~~~~~~~-~~~~~~~~l~~----~~~~i~~a~~aG~~ 98 (302)
T 2ftp_A 26 PIEVADKIRLVDDLSAAGLDYIEVGSFVSPKWVPQ--MAGSAEVFAGIRQ-RPGVTYAALAP----NLKGFEAALESGVK 98 (302)
T ss_dssp CCCHHHHHHHHHHHHHTTCSEEEEEECSCTTTCGG--GTTHHHHHHHSCC-CTTSEEEEECC----SHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHcCcCEEEECCCcCcccccc--ccCHHHHHHHhhh-cCCCEEEEEeC----CHHHHHHHHhCCcC
Confidence 4789999999999999999999998864432 332 1223456666654 37788887775 56889999999999
Q ss_pred cccccccchH-HHHHHhcCCCCCHHHH----HHHHHHHHHhCCCCceEEEeEEEecC-C-----CHHHHHHHHHHHHHcC
Q 017200 235 VFAHNIETVE-ELQSAVRDHRANFKQS----LDVLMMAKDYVPAGTLTKTSIMLGCG-E-----TPDQVVSTMEKVRAAG 303 (375)
Q Consensus 235 v~~hnlEtv~-rl~~~mr~r~~s~~~~----l~vl~~ak~~~p~Gl~tkt~imvGlG-E-----T~ee~~etl~~Lrelg 303 (375)
++....-+++ .....++ .++++. .++++.+|+ .|+.+...++.-+| | +.+++.+.++.+.+.|
T Consensus 99 ~v~i~~~~s~~~~~~~~~---~s~ee~l~~~~~~v~~a~~---~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G 172 (302)
T 2ftp_A 99 EVAVFAAASEAFSQRNIN---CSIKDSLERFVPVLEAARQ---HQVRVRGYISCVLGCPYDGDVDPRQVAWVARELQQMG 172 (302)
T ss_dssp EEEEEEESCHHHHHHHHS---SCHHHHHHHHHHHHHHHHH---TTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHTT
T ss_pred EEEEEEecCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---CCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcC
Confidence 8876555555 3445554 355555 455567777 57888888876554 3 6788999999999999
Q ss_pred CcEEeee
Q 017200 304 VDVMTFG 310 (375)
Q Consensus 304 vd~v~i~ 310 (375)
+|.+.+.
T Consensus 173 ~d~i~l~ 179 (302)
T 2ftp_A 173 CYEVSLG 179 (302)
T ss_dssp CSEEEEE
T ss_pred CCEEEEe
Confidence 9999884
|
| >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00028 Score=68.24 Aligned_cols=142 Identities=18% Similarity=0.211 Sum_probs=105.1
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCC-CCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD-LADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLN 234 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~d-l~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (375)
.++.++.++.++++.+.|+++|-+++...+. .|- .....+.++.+++. +++.+.++.+ +.+.++...++|++
T Consensus 24 ~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~--~~d~~~~~~~~~~~-~~~~~~~l~~----~~~~i~~a~~~g~~ 96 (307)
T 1ydo_A 24 WIATEDKITWINQLSRTGLSYIEITSFVHPKWIPA--LRDAIDVAKGIDRE-KGVTYAALVP----NQRGLENALEGGIN 96 (307)
T ss_dssp CCCHHHHHHHHHHHHTTTCSEEEEEECSCTTTCGG--GTTHHHHHHHSCCC-TTCEEEEECC----SHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCcCcccccc--cCCHHHHHHHhhhc-CCCeEEEEeC----CHHhHHHHHhCCcC
Confidence 4789999999999999999999999865432 231 11123556666543 7888888876 46779999999999
Q ss_pred cccccccchHH-HHHHhcCCCCCHHHH----HHHHHHHHHhCCCCceEEEeEEEecC-C-----CHHHHHHHHHHHHHcC
Q 017200 235 VFAHNIETVEE-LQSAVRDHRANFKQS----LDVLMMAKDYVPAGTLTKTSIMLGCG-E-----TPDQVVSTMEKVRAAG 303 (375)
Q Consensus 235 v~~hnlEtv~r-l~~~mr~r~~s~~~~----l~vl~~ak~~~p~Gl~tkt~imvGlG-E-----T~ee~~etl~~Lrelg 303 (375)
.+....-+++. ....++ .+.++. .++++.+++ .|+.+..+++.-+| | +.+.+++.++.+.+.|
T Consensus 97 ~v~i~~~~sd~~~~~~l~---~s~~e~l~~~~~~v~~ak~---~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G 170 (307)
T 1ydo_A 97 EACVFMSASETHNRKNIN---KSTSESLHILKQVNNDAQK---ANLTTRAYLSTVFGCPYEKDVPIEQVIRLSEALFEFG 170 (307)
T ss_dssp EEEEEEESSHHHHHTTTC---SCHHHHHHHHHHHHHHHHH---TTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred EEEEEeecCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---CCCEEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcC
Confidence 98877666652 333333 455554 566677777 57888888888774 3 6789999999999999
Q ss_pred CcEEeee
Q 017200 304 VDVMTFG 310 (375)
Q Consensus 304 vd~v~i~ 310 (375)
++.|.+.
T Consensus 171 a~~i~l~ 177 (307)
T 1ydo_A 171 ISELSLG 177 (307)
T ss_dssp CSCEEEE
T ss_pred CCEEEEc
Confidence 9999884
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00037 Score=66.57 Aligned_cols=143 Identities=16% Similarity=0.172 Sum_probs=102.9
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCC-CcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDL-ADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLN 234 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl-~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (375)
.++.++.++.++++.+.|++.|-+++...+.+ |- .....+.++.+++. +++.+.++.+ +.+.++...++|++
T Consensus 22 ~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~--~~~~~e~~~~i~~~-~~~~v~~l~~----n~~~i~~a~~~G~~ 94 (295)
T 1ydn_A 22 FVPTADKIALINRLSDCGYARIEATSFVSPKWVPQ--LADSREVMAGIRRA-DGVRYSVLVP----NMKGYEAAAAAHAD 94 (295)
T ss_dssp CCCHHHHHHHHHHHTTTTCSEEEEEECSCTTTCGG--GTTHHHHHHHSCCC-SSSEEEEECS----SHHHHHHHHHTTCS
T ss_pred CcCHHHHHHHHHHHHHcCcCEEEEccCcCcccccc--ccCHHHHHHHHHhC-CCCEEEEEeC----CHHHHHHHHHCCCC
Confidence 48899999999999999999999988544332 21 11245777777654 6788877774 56889999999999
Q ss_pred cccccccchHHHHHHhcCCCCCHHHHH----HHHHHHHHhCCCCceEEEeEEEec------CCCHHHHHHHHHHHHHcCC
Q 017200 235 VFAHNIETVEELQSAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIMLGC------GETPDQVVSTMEKVRAAGV 304 (375)
Q Consensus 235 v~~hnlEtv~rl~~~mr~r~~s~~~~l----~vl~~ak~~~p~Gl~tkt~imvGl------GET~ee~~etl~~Lrelgv 304 (375)
.+...+.+++...+. + -+.++++.+ ++++.+++ .|+.+...++.-+ --+.+++.+.++.+.+.|+
T Consensus 95 ~V~i~~~~S~~h~~~-~-~~~~~~e~~~~~~~~v~~a~~---~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~ 169 (295)
T 1ydn_A 95 EIAVFISASEGFSKA-N-INCTIAESIERLSPVIGAAIN---DGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGC 169 (295)
T ss_dssp EEEEEEESCHHHHHH-H-TSSCHHHHHHHHHHHHHHHHH---TTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHTC
T ss_pred EEEEEEecCHHHHHH-H-cCCCHHHHHHHHHHHHHHHHH---cCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCC
Confidence 887765555532222 1 123555554 55788888 5788876666433 1367889999999999999
Q ss_pred cEEeee
Q 017200 305 DVMTFG 310 (375)
Q Consensus 305 d~v~i~ 310 (375)
+.+.+.
T Consensus 170 d~i~l~ 175 (295)
T 1ydn_A 170 HEVSLG 175 (295)
T ss_dssp SEEEEE
T ss_pred CEEEec
Confidence 999885
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0022 Score=62.69 Aligned_cols=138 Identities=21% Similarity=0.211 Sum_probs=99.5
Q ss_pred CCCcchHHHHHH-HHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHH------hCCCcEEEeecCCCCCChHHHHHH
Q 017200 156 PPDPDEPTNVAE-AIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKE------LKPNMLIEALVPDFRGNNGCVREV 228 (375)
Q Consensus 156 ~ld~eEi~~~a~-al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~------~~p~i~Ie~l~pd~~g~~e~l~~L 228 (375)
.++.++.++.++ ++.+.|+++|-+.+.... ++ . .+.|+++++ ..|++.+.++.+.. ..++..
T Consensus 37 ~~~~~~k~~i~~~~L~~~Gv~~IE~g~~~~~--~~-~----~~~v~~~~~~~~~~~~~~~~~i~~l~~~~----~~i~~a 105 (337)
T 3ble_A 37 SFSTSEKLNIAKFLLQKLNVDRVEIASARVS--KG-E----LETVQKIMEWAATEQLTERIEILGFVDGN----KTVDWI 105 (337)
T ss_dssp CCCHHHHHHHHHHHHHTTCCSEEEEEETTSC--TT-H----HHHHHHHHHHHHHTTCGGGEEEEEESSTT----HHHHHH
T ss_pred CcCHHHHHHHHHHHHHHcCCCEEEEeCCCCC--hh-H----HHHHHHHHhhhhhhccCCCCeEEEEccch----hhHHHH
Confidence 478999999999 999999999998876431 11 1 234444544 34677888887753 368889
Q ss_pred HHcCcccccccccchH-HHHHHhcCCCCCHHHHH----HHHHHHHHhCCCCceEEEeEEE---ecCCCHHHHHHHHHHHH
Q 017200 229 AKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIML---GCGETPDQVVSTMEKVR 300 (375)
Q Consensus 229 ~~aGldv~~hnlEtv~-rl~~~mr~r~~s~~~~l----~vl~~ak~~~p~Gl~tkt~imv---GlGET~ee~~etl~~Lr 300 (375)
.++|+|.+.....+++ .....++ .+.++.+ +.++.+++ .|+.+..+++- +.--+.+.+++.++.+.
T Consensus 106 ~~~g~~~v~i~~~~s~~~~~~~~~---~s~~e~l~~~~~~v~~ak~---~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (337)
T 3ble_A 106 KDSGAKVLNLLTKGSLHHLEKQLG---KTPKEFFTDVSFVIEYAIK---SGLKINVYLEDWSNGFRNSPDYVKSLVEHLS 179 (337)
T ss_dssp HHHTCCEEEEEEECSHHHHHHHTC---CCHHHHHHHHHHHHHHHHH---TTCEEEEEEETHHHHHHHCHHHHHHHHHHHH
T ss_pred HHCCCCEEEEEEecCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---CCCEEEEEEEECCCCCcCCHHHHHHHHHHHH
Confidence 9999999888777777 4555554 3555555 55566677 57777766654 33345888999999999
Q ss_pred HcCCcEEeee
Q 017200 301 AAGVDVMTFG 310 (375)
Q Consensus 301 elgvd~v~i~ 310 (375)
+.|++.|.+.
T Consensus 180 ~~Ga~~i~l~ 189 (337)
T 3ble_A 180 KEHIERIFLP 189 (337)
T ss_dssp TSCCSEEEEE
T ss_pred HcCCCEEEEe
Confidence 9999999884
|
| >3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.015 Score=56.44 Aligned_cols=142 Identities=15% Similarity=0.158 Sum_probs=95.8
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHH----HHHHc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVR----EVAKS 231 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~----~L~~a 231 (375)
.++.++.++.++++.+.|+++|-+.+ +... ...+ +.++.|.+..+++.+.++.+. +.+-++ .+..+
T Consensus 24 ~~~~~~Kl~ia~~L~~~Gv~~IE~g~---p~~~---~~d~-e~v~~i~~~~~~~~i~~l~r~---~~~~i~~a~~al~~a 93 (325)
T 3eeg_A 24 QLNTEEKIIVAKALDELGVDVIEAGF---PVSS---PGDF-NSVVEITKAVTRPTICALTRA---KEADINIAGEALRFA 93 (325)
T ss_dssp -CCTTHHHHHHHHHHHHTCSEEEEEC---TTSC---HHHH-HHHHHHHHHCCSSEEEEECCS---CHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC---CCCC---HhHH-HHHHHHHHhCCCCEEEEeecC---CHHHHHHHHHhhccc
Confidence 48899999999999999999998874 2211 1223 456777777788898888643 334444 44445
Q ss_pred CcccccccccchH-HHHHHhc-CCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 017200 232 GLNVFAHNIETVE-ELQSAVR-DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 232 Gldv~~hnlEtv~-rl~~~mr-~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i 309 (375)
|.+.+...+-+++ .....++ ++....+...++++.+++ .|+.+.-+...+.--+.+.+++.++.+.+.|++.|.+
T Consensus 94 g~~~v~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~a~~---~g~~v~f~~~d~~~~~~~~~~~~~~~~~~~G~~~i~l 170 (325)
T 3eeg_A 94 KRSRIHTGIGSSDIHIEHKLRSTRENILEMAVAAVKQAKK---VVHEVEFFCEDAGRADQAFLARMVEAVIEAGADVVNI 170 (325)
T ss_dssp SSEEEEEEEECSHHHHC----CCCTTGGGTTHHHHHHHHT---TSSEEEEEEETGGGSCHHHHHHHHHHHHHHTCSEEEC
T ss_pred CCCEEEEEecccHHHHHHHhCCCHHHHHHHHHHHHHHHHH---CCCEEEEEccccccchHHHHHHHHHHHHhcCCCEEEe
Confidence 9998887766666 3333333 234455666778888888 4676655555444446667779999999999999887
Q ss_pred e
Q 017200 310 G 310 (375)
Q Consensus 310 ~ 310 (375)
.
T Consensus 171 ~ 171 (325)
T 3eeg_A 171 P 171 (325)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.016 Score=55.46 Aligned_cols=142 Identities=11% Similarity=0.115 Sum_probs=96.2
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCC-hHHHHHHHHcCcc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGN-NGCVREVAKSGLN 234 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~-~e~l~~L~~aGld 234 (375)
.++.++.++.++.+.+.|+++|-+++... -+ .. .+.++.+.+..+++.+.++.+....+ +..++.++++|.+
T Consensus 23 ~~~~~~K~~i~~~L~~~Gv~~IE~g~p~~--~~----~d-~e~v~~i~~~~~~~~i~~l~~~~~~di~~a~~~~~~ag~~ 95 (293)
T 3ewb_X 23 NFDVKEKIQIALQLEKLGIDVIEAGFPIS--SP----GD-FECVKAIAKAIKHCSVTGLARCVEGDIDRAEEALKDAVSP 95 (293)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEEECGGG--CH----HH-HHHHHHHHHHCCSSEEEEEEESSHHHHHHHHHHHTTCSSE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCC--Cc----cH-HHHHHHHHHhcCCCEEEEEecCCHHHHHHHHHHHhhcCCC
Confidence 48999999999999999999999876321 11 11 23467777777889998888642101 2233444557988
Q ss_pred cccccccchH-HHHHHhcCCCCCHHHHHHHH----HHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 017200 235 VFAHNIETVE-ELQSAVRDHRANFKQSLDVL----MMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 235 v~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl----~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i 309 (375)
.+...+-+++ .....+ +.+.++.++.+ +.+++ .|+.+.-++..+.--+.+.+++.++.+.+.|++.|.+
T Consensus 96 ~v~i~~~~Sd~~~~~nl---~~s~~e~l~~~~~~v~~a~~---~g~~v~~~~~d~~~~~~~~~~~~~~~~~~~G~~~i~l 169 (293)
T 3ewb_X 96 QIHIFLATSDVHMEYKL---KMSRAEVLASIKHHISYARQ---KFDVVQFSPEDATRSDRAFLIEAVQTAIDAGATVINI 169 (293)
T ss_dssp EEEEEEECSHHHHHHTT---CCCHHHHHHHHHHHHHHHHT---TCSCEEEEEETGGGSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEecCcHHHHHHHh---CCCHHHHHHHHHHHHHHHHh---CCCEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 8887666666 444444 35677766555 45555 4666665555433346677889999999999999988
Q ss_pred e
Q 017200 310 G 310 (375)
Q Consensus 310 ~ 310 (375)
.
T Consensus 170 ~ 170 (293)
T 3ewb_X 170 P 170 (293)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0095 Score=58.16 Aligned_cols=137 Identities=12% Similarity=0.112 Sum_probs=91.4
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEE-----eeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEee-cCCCCCChHHHHHHH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVIT-----SVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL-VPDFRGNNGCVREVA 229 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLT-----sgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l-~pd~~g~~e~l~~L~ 229 (375)
.++.++.++.++++.+.|+++|-+. ++-.++..-. ...-.+.++.+++..|++.+.++ .|.. +..+.++...
T Consensus 26 ~~~~e~k~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g~~-~~~~~e~l~~i~~~~~~~~i~~l~~p~~-~~~~~i~~a~ 103 (345)
T 1nvm_A 26 QYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFG-RHTDLEYIEAVAGEISHAQIATLLLPGI-GSVHDLKNAY 103 (345)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCC-SSCHHHHHHHHHTTCSSSEEEEEECBTT-BCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCcccCC-CCCHHHHHHHHHhhCCCCEEEEEecCCc-ccHHHHHHHH
Confidence 4889999999999999999999985 2222221000 11135678888777788888887 6643 3678899999
Q ss_pred HcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 017200 230 KSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 230 ~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i 309 (375)
++|+|.+....... ..+...+.++.+++. |+.+...++-...-+++.+.+.++.+.+.|++.|.+
T Consensus 104 ~aGvd~v~I~~~~s------------~~~~~~~~i~~ak~~---G~~v~~~~~~a~~~~~e~~~~ia~~~~~~Ga~~i~l 168 (345)
T 1nvm_A 104 QAGARVVRVATHCT------------EADVSKQHIEYARNL---GMDTVGFLMMSHMIPAEKLAEQGKLMESYGATCIYM 168 (345)
T ss_dssp HHTCCEEEEEEETT------------CGGGGHHHHHHHHHH---TCEEEEEEESTTSSCHHHHHHHHHHHHHHTCSEEEE
T ss_pred hCCcCEEEEEEecc------------HHHHHHHHHHHHHHC---CCEEEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 99999875542111 113345566666663 566665555555556677777777777777777766
|
| >3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.033 Score=56.07 Aligned_cols=142 Identities=18% Similarity=0.196 Sum_probs=96.3
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
+++.++-++.++++.+.|+++|-+.+ +... ....+.++.|.+......+-.+. ..+.+.++...++|++.
T Consensus 57 ~~s~eeKl~Ia~~L~~~Gv~~IEvG~---P~as----p~d~~~~~~i~~~~~~~~v~~~~---r~~~~di~~A~~aG~~~ 126 (423)
T 3ivs_A 57 FFDTEKKIQIAKALDNFGVDYIELTS---PVAS----EQSRQDCEAICKLGLKCKILTHI---RCHMDDARVAVETGVDG 126 (423)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEECC---TTSC----HHHHHHHHHHHTSCCSSEEEEEE---ESCHHHHHHHHHTTCSE
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEee---cccC----HHHHHHHHHHHhcCCCCEEEEee---ccChhhHHHHHHcCCCE
Confidence 58999999999999999999998875 2211 12345566666543333332211 12566789999999998
Q ss_pred ccccccchHHHHH-Hhc-CCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 236 FAHNIETVEELQS-AVR-DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 236 ~~hnlEtv~rl~~-~mr-~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
+...+-+++-..+ .++ ++....+...++++.|++ .|+.+.-++.-++.-+.+.+++.++.+.+.|++.|.+.
T Consensus 127 V~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~ak~---~G~~V~~~~eda~r~d~~~~~~v~~~~~~~Ga~~i~l~ 200 (423)
T 3ivs_A 127 VDVVIGTSQYLRKYSHGKDMTYIIDSATEVINFVKS---KGIEVRFSSEDSFRSDLVDLLSLYKAVDKIGVNRVGIA 200 (423)
T ss_dssp EEEEEEC-------------CHHHHHHHHHHHHHHT---TTCEEEEEEESGGGSCHHHHHHHHHHHHHHCCSEEEEE
T ss_pred EEEEeeccHHHHHHHcCCCHHHHHHHHHHHHHHHHH---CCCEEEEEEccCcCCCHHHHHHHHHHHHHhCCCccccC
Confidence 8877777662221 222 112224566678888888 57888888887888889999999999999999998883
|
| >3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.03 Score=55.36 Aligned_cols=139 Identities=14% Similarity=0.122 Sum_probs=95.6
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHH----HHHHHc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCV----REVAKS 231 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l----~~L~~a 231 (375)
.++.++-++.++++.+.|+++|-+.+-. .. ... .+.++.+.+..++..+.++.+- +.+.+ +.++.+
T Consensus 30 ~~~~~~Kl~ia~~L~~~Gv~~IE~g~p~---~~---~~d-~e~v~~i~~~~~~~~i~~l~r~---~~~di~~a~~al~~a 99 (370)
T 3rmj_A 30 AMTKEEKIRVARQLEKLGVDIIEAGFAA---AS---PGD-FEAVNAIAKTITKSTVCSLSRA---IERDIRQAGEAVAPA 99 (370)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEEEEGG---GC---HHH-HHHHHHHHTTCSSSEEEEEEES---SHHHHHHHHHHHTTS
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEeCCC---CC---HHH-HHHHHHHHHhCCCCeEEEEecC---CHHHHHHHHHHHhhC
Confidence 4899999999999999999999877521 11 111 3456667666778888887742 33334 444559
Q ss_pred CcccccccccchH-HHHHHhcCCCCCHHHHHHHH----HHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcE
Q 017200 232 GLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVL----MMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDV 306 (375)
Q Consensus 232 Gldv~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl----~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~ 306 (375)
|.+.+...+-+++ .+...++ .+.++.++.+ +.+++ .|..+.-+...+.--+.+.+++.++.+.+.|++.
T Consensus 100 g~~~v~if~~~Sd~h~~~~l~---~s~~e~l~~~~~~v~~a~~---~g~~v~~~~ed~~r~~~~~~~~~~~~~~~~Ga~~ 173 (370)
T 3rmj_A 100 PKKRIHTFIATSPIHMEYKLK---MKPKQVIEAAVKAVKIARE---YTDDVEFSCEDALRSEIDFLAEICGAVIEAGATT 173 (370)
T ss_dssp SSEEEEEEEECSHHHHHHTTC---CCHHHHHHHHHHHHHHHTT---TCSCEEEEEETGGGSCHHHHHHHHHHHHHHTCCE
T ss_pred CCCEEEEEecCcHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---cCCEEEEecCCCCccCHHHHHHHHHHHHHcCCCE
Confidence 9999888777777 4444544 4677776665 45555 4555544444444456677889999999999999
Q ss_pred Eeee
Q 017200 307 MTFG 310 (375)
Q Consensus 307 v~i~ 310 (375)
|.+.
T Consensus 174 i~l~ 177 (370)
T 3rmj_A 174 INIP 177 (370)
T ss_dssp EEEE
T ss_pred EEec
Confidence 9884
|
| >1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.043 Score=56.87 Aligned_cols=135 Identities=17% Similarity=0.179 Sum_probs=94.4
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeC-----CC-CCcccHHHHHHHHHHHHHhCCCcEEEeec--CCCCC-------
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDR-----DD-LADQGSGHFAQTVRKLKELKPNMLIEALV--PDFRG------- 220 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr-----~d-l~d~G~~~~~~lir~Ik~~~p~i~Ie~l~--pd~~g------- 220 (375)
.++.++.++.++++.+.|+++|-+.++-. .- .+| =.+.++.|++..|++.+.++. ++..|
T Consensus 43 ~~~tedKl~Ia~~L~~~Gv~~IE~G~patF~~~~rfl~~d-----~~e~lr~l~~~~~~~~l~~L~R~~N~~G~~~ypdd 117 (539)
T 1rqb_A 43 RMAMEDMVGACADIDAAGYWSVECWGGATYDSCIRFLNED-----PWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYNDE 117 (539)
T ss_dssp CCCGGGTGGGHHHHHHTTCSEEEEEETTHHHHHHHTSCCC-----HHHHHHHHHHHCTTSCEEEEECGGGTTSSSCCCHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCcccccccchhccCCC-----HHHHHHHHHHhCCCCEEEEEeccccccCcccCccc
Confidence 47899999999999999999999998632 00 112 135567777667888888876 22222
Q ss_pred -ChHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE--EEecCCCHHHHHHHHH
Q 017200 221 -NNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI--MLGCGETPDQVVSTME 297 (375)
Q Consensus 221 -~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~i--mvGlGET~ee~~etl~ 297 (375)
....++...++|+|++....-+.+ .+...+.++.+++ .|..+...+ ..|..-+.+.+++.++
T Consensus 118 v~~~~ve~a~~aGvd~vrIf~s~sd------------~~ni~~~i~~ak~---~G~~v~~~i~~~~~~~~~~e~~~~~a~ 182 (539)
T 1rqb_A 118 VVDRFVDKSAENGMDVFRVFDAMND------------PRNMAHAMAAVKK---AGKHAQGTICYTISPVHTVEGYVKLAG 182 (539)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTCC------------THHHHHHHHHHHH---TTCEEEEEEECCCSTTCCHHHHHHHHH
T ss_pred ccHHHHHHHHhCCCCEEEEEEehhH------------HHHHHHHHHHHHH---CCCeEEEEEEeeeCCCCCHHHHHHHHH
Confidence 245678889999998775432222 2344577788888 466665555 4455668888889999
Q ss_pred HHHHcCCcEEeee
Q 017200 298 KVRAAGVDVMTFG 310 (375)
Q Consensus 298 ~Lrelgvd~v~i~ 310 (375)
.+.+.|++.|.|.
T Consensus 183 ~l~~~Gad~I~L~ 195 (539)
T 1rqb_A 183 QLLDMGADSIALK 195 (539)
T ss_dssp HHHHTTCSEEEEE
T ss_pred HHHHcCCCEEEeC
Confidence 9999999888773
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.062 Score=54.71 Aligned_cols=135 Identities=18% Similarity=0.173 Sum_probs=93.7
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCC-----C-CCcccHHHHHHHHHHHHHhCCCcEEEeec--CCCCC-------
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRD-----D-LADQGSGHFAQTVRKLKELKPNMLIEALV--PDFRG------- 220 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~-----d-l~d~G~~~~~~lir~Ik~~~p~i~Ie~l~--pd~~g------- 220 (375)
.++.++.++.++++.+.|+++|-+.++-.- - -+| -.+.++.|++..|++.+.+++ ++..|
T Consensus 26 ~~~~~dkl~Ia~~L~~~Gv~~IE~g~~atF~~~~r~~~~d-----~~e~l~~i~~~~~~~~l~~l~R~~N~~G~~~~~dd 100 (464)
T 2nx9_A 26 RLRIDDMLPIAQQLDQIGYWSLECWGGATFDSCIRFLGED-----PWQRLRLLKQAMPNTPLQMLLRGQNLLGYRHYADD 100 (464)
T ss_dssp CCCGGGTGGGHHHHHTSCCSEEEEEETTHHHHHHHTTCCC-----HHHHHHHHHHHCSSSCEEEEECGGGTTSSSCCCHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCcCccccchhhccCCC-----HHHHHHHHHHhCCCCeEEEEeccccccCcccccch
Confidence 478899999999999999999999885310 0 122 145677777767888888776 33322
Q ss_pred -ChHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE--EEecCCCHHHHHHHHH
Q 017200 221 -NNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI--MLGCGETPDQVVSTME 297 (375)
Q Consensus 221 -~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~i--mvGlGET~ee~~etl~ 297 (375)
....++...++|+|++....-+.+ .+...+.++.+++ .|..+..++ ..|.--+.+.+++.++
T Consensus 101 v~~~~v~~a~~~Gvd~i~if~~~sd------------~~ni~~~i~~ak~---~G~~v~~~i~~~~~~~~~~e~~~~~a~ 165 (464)
T 2nx9_A 101 VVDTFVERAVKNGMDVFRVFDAMND------------VRNMQQALQAVKK---MGAHAQGTLCYTTSPVHNLQTWVDVAQ 165 (464)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTCC------------THHHHHHHHHHHH---TTCEEEEEEECCCCTTCCHHHHHHHHH
T ss_pred hhHHHHHHHHhCCcCEEEEEEecCH------------HHHHHHHHHHHHH---CCCEEEEEEEeeeCCCCCHHHHHHHHH
Confidence 145578888999998765432222 2344567788888 466665555 4455567888889999
Q ss_pred HHHHcCCcEEeee
Q 017200 298 KVRAAGVDVMTFG 310 (375)
Q Consensus 298 ~Lrelgvd~v~i~ 310 (375)
.+.+.|++.|.|.
T Consensus 166 ~l~~~Gad~I~l~ 178 (464)
T 2nx9_A 166 QLAELGVDSIALK 178 (464)
T ss_dssp HHHHTTCSEEEEE
T ss_pred HHHHCCCCEEEEc
Confidence 9999999888773
|
| >2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A* | Back alignment and structure |
|---|
Probab=95.39 E-value=0.14 Score=50.63 Aligned_cols=140 Identities=13% Similarity=0.187 Sum_probs=96.3
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
.++.++.++.++++.+.|+++|-+.+. .. .....+.++.|++..+...+..+. ++..+.++...++|++.
T Consensus 21 ~~~~~~k~~ia~~L~~~Gv~~IE~g~p---~~----~~~~~~~~~~i~~~~~~~~v~~~~---r~~~~di~~a~~~g~~~ 90 (382)
T 2ztj_A 21 NFSTQDKVEIAKALDEFGIEYIEVTTP---VA----SPQSRKDAEVLASLGLKAKVVTHI---QCRLDAAKVAVETGVQG 90 (382)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEECCT---TS----CHHHHHHHHHHHTSCCSSEEEEEE---ESCHHHHHHHHHTTCSE
T ss_pred CcCHHHHHHHHHHHHHcCcCEEEEcCC---cC----CHHHHHHHHHHHhcCCCcEEEEEc---ccChhhHHHHHHcCCCE
Confidence 588999999999999999999988652 11 122456777777665555554432 12456689999999998
Q ss_pred ccccccchHHHHHHhcCCCCCHHH----HHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 236 FAHNIETVEELQSAVRDHRANFKQ----SLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 236 ~~hnlEtv~rl~~~mr~r~~s~~~----~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
+...+-+++-....+ +.+.++ ..+.++.+++..+. +.+.-++.-++.-+.+.+++.++.+.+. ++.|.+.
T Consensus 91 v~i~~~~s~~~~~~~---~~s~~e~l~~~~~~v~~ak~~g~~-~~v~~~~ed~~~~~~~~~~~~~~~~~~~-a~~i~l~ 164 (382)
T 2ztj_A 91 IDLLFGTSKYLRAPH---GRDIPRIIEEAKEVIAYIREAAPH-VEVRFSAEDTFRSEEQDLLAVYEAVAPY-VDRVGLA 164 (382)
T ss_dssp EEEEECC-----------CCCHHHHHHHHHHHHHHHHHHCTT-SEEEEEETTTTTSCHHHHHHHHHHHGGG-CSEEEEE
T ss_pred EEEEeccCHHHHHHh---CCCHHHHHHHHHHHHHHHHHcCCC-EEEEEEEEeCCCCCHHHHHHHHHHHHHh-cCEEEec
Confidence 887666665222233 345544 56667778884211 7777777767777889999999999999 9998883
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=94.13 E-value=0.92 Score=41.92 Aligned_cols=114 Identities=18% Similarity=0.243 Sum_probs=83.5
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.++++....++++.+.|++-|-+|--+ ++ -.+.|++|++.+|++.|.+=+ .. +.+.++...++|.|.+
T Consensus 43 ~~~~~a~~~a~al~~gGi~~iEvt~~t----~~-----a~e~I~~l~~~~~~~~iGaGT--Vl-t~~~a~~Ai~AGA~fI 110 (232)
T 4e38_A 43 DNAEDIIPLGKVLAENGLPAAEITFRS----DA-----AVEAIRLLRQAQPEMLIGAGT--IL-NGEQALAAKEAGATFV 110 (232)
T ss_dssp SSGGGHHHHHHHHHHTTCCEEEEETTS----TT-----HHHHHHHHHHHCTTCEEEEEC--CC-SHHHHHHHHHHTCSEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCC----CC-----HHHHHHHHHHhCCCCEEeECC--cC-CHHHHHHHHHcCCCEE
Confidence 468999999999999999999987422 11 257888999888887776533 22 6899999999999976
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecC
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQY 312 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qY 312 (375)
- . +..+ .++++.+++. |+.+-.+++ |..|+...+ ++|.|+|.+|+.
T Consensus 111 v-------------s-P~~~----~~vi~~~~~~---gi~~ipGv~-----TptEi~~A~----~~Gad~vK~FPa 156 (232)
T 4e38_A 111 V-------------S-PGFN----PNTVRACQEI---GIDIVPGVN-----NPSTVEAAL----EMGLTTLKFFPA 156 (232)
T ss_dssp E-------------C-SSCC----HHHHHHHHHH---TCEEECEEC-----SHHHHHHHH----HTTCCEEEECST
T ss_pred E-------------e-CCCC----HHHHHHHHHc---CCCEEcCCC-----CHHHHHHHH----HcCCCEEEECcC
Confidence 2 2 2222 3666777773 566555543 999988774 789999999743
|
| >1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A | Back alignment and structure |
|---|
Probab=93.56 E-value=0.85 Score=43.32 Aligned_cols=140 Identities=12% Similarity=0.094 Sum_probs=89.3
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEe-eeCCCCC----cccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITS-VDRDDLA----DQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK 230 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTs-gdr~dl~----d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~ 230 (375)
..+++++++.|++..+.|.+.|-|-+ ..|+.-. +...+.+..+|+.|++.. ++.|.+=+ + +.+.++.-.+
T Consensus 34 ~~~~~~a~~~a~~~v~~GAdiIDIGgestrPga~~v~~~eE~~rv~pvi~~l~~~~-~~piSIDT--~--~~~va~aAl~ 108 (282)
T 1aj0_A 34 HNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRF-EVWISVDT--S--KPEVIRESAK 108 (282)
T ss_dssp CTHHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHC-CCEEEEEC--C--CHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhhc-CCeEEEeC--C--CHHHHHHHHH
Confidence 36789999999999999999999888 4555421 122566778888887764 44443322 2 5778888888
Q ss_pred cCccccccc-ccchHHHHHH----------hcCC--CCC--------------HHHHHHHHHHHHHhCCCCce---EEEe
Q 017200 231 SGLNVFAHN-IETVEELQSA----------VRDH--RAN--------------FKQSLDVLMMAKDYVPAGTL---TKTS 280 (375)
Q Consensus 231 aGldv~~hn-lEtv~rl~~~----------mr~r--~~s--------------~~~~l~vl~~ak~~~p~Gl~---tkt~ 280 (375)
+|.+.++.- -+..+++++- |+.+ ..+ .+...+.++.+.+ .|+. +--+
T Consensus 109 aGa~iINdvsg~~d~~~~~~~a~~~~~vVlmh~~G~p~tm~~~~~y~d~~~ev~~~l~~~i~~a~~---~Gi~~~~IilD 185 (282)
T 1aj0_A 109 VGAHIINDIRSLSEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQ---AGIAKEKLLLD 185 (282)
T ss_dssp TTCCEEEETTTTCSTTHHHHHHHHTCCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHH---TTCCGGGEEEE
T ss_pred cCCCEEEECCCCCCHHHHHHHHHhCCeEEEEccCCCCccccccCccchHHHHHHHHHHHHHHHHHH---cCCChhhEEEe
Confidence 888877652 1122233322 1111 011 4445566667776 4653 5555
Q ss_pred EEEecCCCHHHHHHHHHHHHHcC
Q 017200 281 IMLGCGETPDQVVSTMEKVRAAG 303 (375)
Q Consensus 281 imvGlGET~ee~~etl~~Lrelg 303 (375)
--+|||.|.++-+++|+.++++.
T Consensus 186 Pg~gf~k~~~~n~~ll~~l~~~~ 208 (282)
T 1aj0_A 186 PGFGFGKNLSHNYSLLARLAEFH 208 (282)
T ss_dssp CCTTSSCCHHHHHHHHHTGGGGG
T ss_pred CCCCcccCHHHHHHHHHHHHHHh
Confidence 55688999998888888777653
|
| >3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=92.65 E-value=0.34 Score=46.85 Aligned_cols=137 Identities=9% Similarity=0.072 Sum_probs=81.2
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCC-CCcccHHHH--HHHHHHHHHhCCCcEEEeecCCCCCChHHHHHH---H
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD-LADQGSGHF--AQTVRKLKELKPNMLIEALVPDFRGNNGCVREV---A 229 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~d-l~d~G~~~~--~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L---~ 229 (375)
.++.++.++.++++.+.|+++|=+++...+. -.+. .-.| .+.++.|++ .|++.+.+|+|......+.+..+ .
T Consensus 20 ~~~~~~k~~ia~~L~~aGv~~IEvg~~~~p~~~f~~-~~~~~~~e~l~~i~~-~~~~~~~~L~r~~~~~~~dv~~~~~a~ 97 (320)
T 3dxi_A 20 DFNSKIVDAYILAMNELPIDYLEVGYRNKPSKEYMG-KFGYTPVSVLKHLRN-ISTKKIAIMLNEKNTTPEDLNHLLLPI 97 (320)
T ss_dssp CCCHHHHHHHHHHHHTTTCCEEEEEECCSCCSSCCC-HHHHCCHHHHHHHHH-HCCSEEEEEEEGGGCCGGGHHHHHGGG
T ss_pred cCCHHHHHHHHHHHHHhCCCEEEEecccCCcccccc-ccccChHHHHHHHhh-ccCCeEEEEecCCCCChhhHHHHHHhh
Confidence 4789999999999999999999999764321 1111 1112 356677776 48899999876531112223333 3
Q ss_pred HcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHH-HHHHHHHHHHHcCCcEEe
Q 017200 230 KSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPD-QVVSTMEKVRAAGVDVMT 308 (375)
Q Consensus 230 ~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~e-e~~etl~~Lrelgvd~v~ 308 (375)
++|+|.+..... ..+.++..++++.+++ .|+.+..+++..-+-++. +++..+..+ +.|++.|.
T Consensus 98 ~~Gvd~~ri~~~------------~~nle~~~~~v~~ak~---~G~~v~~~~~~~~~~~~~~~~l~~~~~~-~~G~~~i~ 161 (320)
T 3dxi_A 98 IGLVDMIRIAID------------PQNIDRAIVLAKAIKT---MGFEVGFNVMYMSKWAEMNGFLSKLKAI-DKIADLFC 161 (320)
T ss_dssp TTTCSEEEEEEC------------GGGHHHHHHHHHHHHT---TTCEEEEEECCTTTGGGSTTSGGGGGGG-TTTCSEEE
T ss_pred hcCCCEEEEEec------------HHHHHHHHHHHHHHHH---CCCEEEEEEEeCCCCCCHHHHHHHHHHh-hCCCCEEE
Confidence 467776644210 1236677777777777 466665555542232222 344444433 45777776
Q ss_pred ee
Q 017200 309 FG 310 (375)
Q Consensus 309 i~ 310 (375)
+.
T Consensus 162 l~ 163 (320)
T 3dxi_A 162 MV 163 (320)
T ss_dssp EE
T ss_pred EC
Confidence 63
|
| >1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1 | Back alignment and structure |
|---|
Probab=92.38 E-value=2.7 Score=39.80 Aligned_cols=138 Identities=13% Similarity=0.083 Sum_probs=83.3
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEee-eCCCCC----cccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSV-DRDDLA----DQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK 230 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsg-dr~dl~----d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~ 230 (375)
..+++++++.|+++.+.|.+.|-|-|. .++... +.-...+..+|+.|++. ++.|.+=+ + +.+.++.-.+
T Consensus 25 ~~~~~~a~~~a~~~v~~GAdiIDIGgestrpga~~v~~~eE~~Rv~pvi~~l~~~--~~piSIDT--~--~~~va~aAl~ 98 (280)
T 1eye_A 25 YLDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQ--GITVSIDT--M--RADVARAALQ 98 (280)
T ss_dssp CCSHHHHHHHHHHHHHTTCSEEEEECC--------------HHHHHHHHHHHHHT--TCCEEEEC--S--CHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCCCCHHHHHHHHHHHHHHhhcC--CCEEEEeC--C--CHHHHHHHHH
Confidence 468999999999999999999998873 344311 11256677888888764 44443322 2 5777888888
Q ss_pred cCccccccc-ccc-hHHHHHH----------hcCCC---------CC--------HHHHHHHHHHHHHhCCCCce---EE
Q 017200 231 SGLNVFAHN-IET-VEELQSA----------VRDHR---------AN--------FKQSLDVLMMAKDYVPAGTL---TK 278 (375)
Q Consensus 231 aGldv~~hn-lEt-v~rl~~~----------mr~r~---------~s--------~~~~l~vl~~ak~~~p~Gl~---tk 278 (375)
+|.+.++.- -+. .+++++- |+.++ .. .+...+.++.+.+ .|+. +-
T Consensus 99 aGa~iINdvsg~~~d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~dv~~~v~~~l~~~i~~a~~---~Gi~~~~Ii 175 (280)
T 1eye_A 99 NGAQMVNDVSGGRADPAMGPLLAEADVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVA---AGVDPARLV 175 (280)
T ss_dssp TTCCEEEETTTTSSCTTHHHHHHHHTCCEEEECCCCSCTTCTTSCCCCSSHHHHHHHHHHHHHHHHHH---TTCCGGGEE
T ss_pred cCCCEEEECCCCCCCHHHHHHHHHhCCeEEEEcCCCCCcchhhcCcchhHHHHHHHHHHHHHHHHHHH---cCCChhhEE
Confidence 888877652 111 2233322 11110 11 3334456666666 4653 44
Q ss_pred EeEEEecCCCHHHHHHHHHHHHHc
Q 017200 279 TSIMLGCGETPDQVVSTMEKVRAA 302 (375)
Q Consensus 279 t~imvGlGET~ee~~etl~~Lrel 302 (375)
-+--+|||.|.++=+++|+.++++
T Consensus 176 lDPg~Gf~k~~~~n~~ll~~l~~~ 199 (280)
T 1eye_A 176 LDPGLGFAKTAQHNWAILHALPEL 199 (280)
T ss_dssp EECCTTSSCCHHHHHHHHHTHHHH
T ss_pred EECCCCcccCHHHHHHHHHHHHHh
Confidence 444568999998888888777765
|
| >3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=91.99 E-value=3.2 Score=39.23 Aligned_cols=147 Identities=12% Similarity=0.151 Sum_probs=84.7
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
|++++|+.+.|.+..+.|..-|+|=-=|.+.-+....+.|.++++.|++..|++.|.+.++.-.+..+.-..+.+..+|.
T Consensus 26 PvTpeEia~~A~~~~~AGAaivHlHvRd~~G~~s~d~~~~~e~~~~IR~~~pd~ii~~Ttg~~~~~~e~R~~~~~~~Pe~ 105 (275)
T 3no5_A 26 PITVSEQVESTQAAFEAGATLVHLHVRNDDETPTSNPDRFALVLEGIRKHAPGMITQVSTGGRSGAGNERGAMLSLRPDM 105 (275)
T ss_dssp CCSHHHHHHHHHHHHHHTCCEEEECEECTTSCEECCHHHHHHHHHHHHHHSTTCEEEECCCCCTTCCGGGGTTGGGCCSE
T ss_pred CCCHHHHHHHHHHHHHccCcEEEEeecCCCCCcCCCHHHHHHHHHHHHHhCCCeEEEeCCCCCCCCHHHHhhHhhcCCCE
Confidence 68999999999999999998777664443222222367899999999999999999887753111111113334455665
Q ss_pred ccc-----cc---------cchHHHHHHhcCCC-------CCHHHHHHHHHHHHHhCCCCceEEEeEEEec----CCCHH
Q 017200 236 FAH-----NI---------ETVEELQSAVRDHR-------ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC----GETPD 290 (375)
Q Consensus 236 ~~h-----nl---------Etv~rl~~~mr~r~-------~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl----GET~e 290 (375)
... |. +.+++++..|+..+ ++..+-..+...+++-...+ +.--.+++|. .-+.+
T Consensus 106 aSl~~gs~Nf~~~v~~N~~~~~~~~~~~~~e~Gi~pE~e~fd~g~l~~~~~l~~~Gl~~~-p~~~~~vlGv~~g~~~~~~ 184 (275)
T 3no5_A 106 ASLATGSVNFPTRVYDNPPELVDWLAAEMKTYGIKPEVEAFDLSMIFQAAAMQAAGAIVG-PLHIQFVMGIKNAMPVDRE 184 (275)
T ss_dssp EEEECSCEECSSSEECCCHHHHHHHHHHHHHTTCEEEEEESSTHHHHHHHHHHHHTSSCS-SCEEEEEECCTTSCCCCHH
T ss_pred EEecCcccccccccccCCHHHHHHHHHHHHHcCCeeEEEEEcHHHHHHHHHHHHCCCCCC-CeeEEEEeCCCCCCCCCHH
Confidence 442 21 22445566655322 22233333333333311111 2345566665 33666
Q ss_pred HHHHHHHHHHHcC
Q 017200 291 QVVSTMEKVRAAG 303 (375)
Q Consensus 291 e~~etl~~Lrelg 303 (375)
++...++.++.++
T Consensus 185 ~l~~~~~~l~~~~ 197 (275)
T 3no5_A 185 VLEFYVQTLKRLS 197 (275)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCC
Confidence 7666666665444
|
| >2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X* | Back alignment and structure |
|---|
Probab=91.81 E-value=3.9 Score=38.40 Aligned_cols=136 Identities=13% Similarity=0.116 Sum_probs=87.9
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHc--Ccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKS--GLN 234 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~a--Gld 234 (375)
.+.+++++.|++..+.|.+.|-|-++... +...+.+..+|+.|++.. ++.|.+=+ + +.+.++.-.++ |.+
T Consensus 31 ~~~~~a~~~a~~~v~~GAdiIDIg~~s~~---~eE~~rv~~vi~~l~~~~-~~pisIDT--~--~~~v~~aal~a~~Ga~ 102 (271)
T 2yci_X 31 KDPRPIQEWARRQAEKGAHYLDVNTGPTA---DDPVRVMEWLVKTIQEVV-DLPCCLDS--T--NPDAIEAGLKVHRGHA 102 (271)
T ss_dssp TCCHHHHHHHHHHHHTTCSEEEEECCSCS---SCHHHHHHHHHHHHHHHC-CCCEEEEC--S--CHHHHHHHHHHCCSCC
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEcCCcCc---hhHHHHHHHHHHHHHHhC-CCeEEEeC--C--CHHHHHHHHHhCCCCC
Confidence 57899999999999999999998776521 123677888999998764 34443322 2 67888888888 998
Q ss_pred ccc-ccccch--HHHHHH----------hcC--C--CCCHHHHHH----HHHHHHHhCCCCce---EEEeEEEec-CCCH
Q 017200 235 VFA-HNIETV--EELQSA----------VRD--H--RANFKQSLD----VLMMAKDYVPAGTL---TKTSIMLGC-GETP 289 (375)
Q Consensus 235 v~~-hnlEtv--~rl~~~----------mr~--r--~~s~~~~l~----vl~~ak~~~p~Gl~---tkt~imvGl-GET~ 289 (375)
.++ .+.+.. +++.+- |+. + ..+.++.++ .++.+.+ .|+. +--+-.+|+ |-+.
T Consensus 103 iINdvs~~~d~~~~~~~~~a~~~~~vv~m~~d~~G~p~t~~~~~~~l~~~~~~a~~---~Gi~~~~IilDPg~gfigk~~ 179 (271)
T 2yci_X 103 MINSTSADQWKMDIFFPMAKKYEAAIIGLTMNEKGVPKDANDRSQLAMELVANADA---HGIPMTELYIDPLILPVNVAQ 179 (271)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHTCEEEEESCBTTBCCCSHHHHHHHHHHHHHHHHH---TTCCGGGEEEECCCCCTTTST
T ss_pred EEEECCCCccccHHHHHHHHHcCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHH---CCCCcccEEEecCCCccccCH
Confidence 886 343322 344432 221 1 234444444 4445555 4654 566667788 8888
Q ss_pred HHHHHHHHHHHHcC
Q 017200 290 DQVVSTMEKVRAAG 303 (375)
Q Consensus 290 ee~~etl~~Lrelg 303 (375)
++-+++|+.++.+.
T Consensus 180 ~~~~~~l~~l~~~~ 193 (271)
T 2yci_X 180 EHAVEVLETIRQIK 193 (271)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 87766666666553
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=91.28 E-value=1.2 Score=39.90 Aligned_cols=76 Identities=14% Similarity=0.212 Sum_probs=53.1
Q ss_pred CcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccc
Q 017200 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFA 237 (375)
Q Consensus 158 d~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~ 237 (375)
..+++.+.++.+.+.|++.++++..+... . +.....++++.|++.. ++.+-+ .....+.+.++.+.++|+|.+.
T Consensus 31 ~~~~~~~~a~~~~~~G~d~i~v~~~~~~~-~--~~~~~~~~i~~i~~~~-~ipvi~--~g~i~~~~~~~~~~~~Gad~V~ 104 (253)
T 1h5y_A 31 EVGDPVEMAVRYEEEGADEIAILDITAAP-E--GRATFIDSVKRVAEAV-SIPVLV--GGGVRSLEDATTLFRAGADKVS 104 (253)
T ss_dssp EEECHHHHHHHHHHTTCSCEEEEECCCCT-T--THHHHHHHHHHHHHHC-SSCEEE--ESSCCSHHHHHHHHHHTCSEEE
T ss_pred ecccHHHHHHHHHHcCCCEEEEEeCCccc-c--CCcccHHHHHHHHHhc-CCCEEE--ECCCCCHHHHHHHHHcCCCEEE
Confidence 45789999999999999999998654322 1 2334577888888765 333322 2222367888999999999887
Q ss_pred cc
Q 017200 238 HN 239 (375)
Q Consensus 238 hn 239 (375)
.+
T Consensus 105 i~ 106 (253)
T 1h5y_A 105 VN 106 (253)
T ss_dssp ES
T ss_pred EC
Confidence 65
|
| >2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A | Back alignment and structure |
|---|
Probab=90.89 E-value=3.4 Score=39.18 Aligned_cols=141 Identities=17% Similarity=0.258 Sum_probs=87.5
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCC--ChHHHHHHHHcCc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG--NNGCVREVAKSGL 233 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g--~~e~l~~L~~aGl 233 (375)
|++++|+.+.|.+..+.|..-|+|=.=|.+.-+....+.|.+++..|++..|++.|.+.++.-.. ..+.+..+ +..+
T Consensus 30 PvTpeEia~~A~~a~~AGAaivHlHvRd~~G~ps~d~~~~~e~~~~IR~~~pd~ii~~TTg~~~~~~~eeR~~~~-~~~P 108 (282)
T 2y7e_A 30 PITPEEQAKEAKACFEAGARVIHLHIREDDGRPSQRLDRFQEAISAIREVVPEIIIQISTGGAVGESFDKRLAPL-ALKP 108 (282)
T ss_dssp CCSHHHHHHHHHHHHHHTEEEEEECEECTTSCEECCHHHHHHHHHHHHHHCTTSEEEECSSCSTTCCHHHHHGGG-GGCC
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCHHHHHHHh-hcCC
Confidence 68999999999999999998777765542111222378899999999998899999987753221 23445555 5667
Q ss_pred cccccc-----c---------cchHHHHHHhcCCC-------CCHHHHHHHHHHHHHhCCCCce----EEEeEEEec---
Q 017200 234 NVFAHN-----I---------ETVEELQSAVRDHR-------ANFKQSLDVLMMAKDYVPAGTL----TKTSIMLGC--- 285 (375)
Q Consensus 234 dv~~hn-----l---------Etv~rl~~~mr~r~-------~s~~~~l~vl~~ak~~~p~Gl~----tkt~imvGl--- 285 (375)
|....+ . +.+++++..|+..+ ++......+...+++ |+. .-..+++|.
T Consensus 109 e~asl~~gs~Nf~~~v~~n~~~~~~~~~~~~~e~Gv~pE~e~fd~g~l~~~~~l~~~----Gl~p~~p~~~~~VlGv~~g 184 (282)
T 2y7e_A 109 EMATLNAGTLNFGDDIFINHPADIIRLAEAFKQYNVVPEVEVYESGMVDAVARLIKK----GIITQNPLHIQFVLGVPGG 184 (282)
T ss_dssp SEEEEECCCEEETTEEECCCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHT----TSCCCSSCEEEEEECCTTS
T ss_pred CEEEecccccccccccccCCHHHHHHHHHHHHHcCCeEEEEEECHHHHHHHHHHHHc----CCCCCCCeEEEEEEecCCC
Confidence 765222 2 22456666666332 333443333333333 443 445555554
Q ss_pred -CCCHHHHHHHHHHHHH
Q 017200 286 -GETPDQVVSTMEKVRA 301 (375)
Q Consensus 286 -GET~ee~~etl~~Lre 301 (375)
.-+.+++...+..|-+
T Consensus 185 ~~~~~~~L~~~~~~lp~ 201 (282)
T 2y7e_A 185 MSGKPKNLMYMMEHLKE 201 (282)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhccc
Confidence 4567777777766654
|
| >2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A* | Back alignment and structure |
|---|
Probab=90.50 E-value=3.8 Score=39.07 Aligned_cols=138 Identities=13% Similarity=0.105 Sum_probs=73.6
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEee-eCCCCC----cccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSV-DRDDLA----DQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK 230 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsg-dr~dl~----d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~ 230 (375)
..+++++++.|+++.+.|.+.|-|=|. .|+... +.-.+.+..+|+.|++. ++.|.+=+ + +.+.++.-.+
T Consensus 48 ~~~~~~a~~~a~~~v~~GAdIIDIGgeSTrPga~~v~~~eE~~Rv~pvI~~l~~~--~vpiSIDT--~--~~~Va~aAl~ 121 (294)
T 2dqw_A 48 YLDPERALERAREMVAEGADILDLGAESTRPGAAPVPVEEEKRRLLPVLEAVLSL--GVPVSVDT--R--KPEVAEEALK 121 (294)
T ss_dssp -----CCHHHHHHHHHHTCSEEEEECC-----------CCHHHHHHHHHHHHHTT--CSCEEEEC--S--CHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhC--CCeEEEEC--C--CHHHHHHHHH
Confidence 368899999999999999999998773 344311 11256677888888754 44443322 2 4566666666
Q ss_pred cCcccccc-cccchHHHHHH----------hcCC---CCC--------------HHHHHHHHHHHHHhCCCCce-EEEeE
Q 017200 231 SGLNVFAH-NIETVEELQSA----------VRDH---RAN--------------FKQSLDVLMMAKDYVPAGTL-TKTSI 281 (375)
Q Consensus 231 aGldv~~h-nlEtv~rl~~~----------mr~r---~~s--------------~~~~l~vl~~ak~~~p~Gl~-tkt~i 281 (375)
+|.+.++- +-+..+++++- |+.+ ..+ .+...+.++.+.+ .|+. +--+-
T Consensus 122 aGa~iINdVsg~~d~~m~~v~a~~~~~vVlmh~~eG~p~tm~~~~~y~dv~~ev~~~l~~~i~~a~~---~Gi~~IilDP 198 (294)
T 2dqw_A 122 LGAHLLNDVTGLRDERMVALAARHGVAAVVMHMPVPDPATMMAHARYRDVVAEVKAFLEAQARRALS---AGVPQVVLDP 198 (294)
T ss_dssp HTCSEEECSSCSCCHHHHHHHHHHTCEEEEECCSSSCTTTGGGGCCCSSHHHHHHHHHHHHHHHHHH---TTCSCEEEEC
T ss_pred hCCCEEEECCCCCChHHHHHHHHhCCCEEEEcCCCCCCccccccCccccHHHHHHHHHHHHHHHHHH---CCCCcEEEcC
Confidence 67766543 11112233322 1111 011 2233445566665 4653 12222
Q ss_pred EEecCCCHHHHHHHHHHHHHc
Q 017200 282 MLGCGETPDQVVSTMEKVRAA 302 (375)
Q Consensus 282 mvGlGET~ee~~etl~~Lrel 302 (375)
-+|||.|.++-+++|+.++++
T Consensus 199 G~Gf~kt~~~n~~ll~~l~~~ 219 (294)
T 2dqw_A 199 GFGFGKLLEHNLALLRRLDEI 219 (294)
T ss_dssp CTTSSCCHHHHHHHHHTHHHH
T ss_pred CCCcccCHHHHHHHHHHHHHH
Confidence 237899999888888777664
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=90.43 E-value=6.9 Score=35.55 Aligned_cols=112 Identities=22% Similarity=0.283 Sum_probs=78.6
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.++++.++.++++.+.|++-|-++- +. ++ -.+.++.+++.+|++.+.+=+ -+ +.+.++...++|.|.+
T Consensus 26 ~~~~~~~~~~~al~~gGv~~iel~~--k~--~~-----~~~~i~~l~~~~~~l~vgaGt-vl--~~d~~~~A~~aGAd~v 93 (224)
T 1vhc_A 26 DNADDILPLADTLAKNGLSVAEITF--RS--EA-----AADAIRLLRANRPDFLIAAGT-VL--TAEQVVLAKSSGADFV 93 (224)
T ss_dssp SSGGGHHHHHHHHHHTTCCEEEEET--TS--TT-----HHHHHHHHHHHCTTCEEEEES-CC--SHHHHHHHHHHTCSEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEec--cC--ch-----HHHHHHHHHHhCcCcEEeeCc-Ee--eHHHHHHHHHCCCCEE
Confidence 5788999999999999999988882 21 11 256888898889887776543 22 5789999999999977
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
-- +..+ .++++.+++. |.. +|.| -.|.+|+.+. .+.|.|++.+|
T Consensus 94 ~~--------------p~~d----~~v~~~ar~~---g~~----~i~G-v~t~~e~~~A----~~~Gad~vk~F 137 (224)
T 1vhc_A 94 VT--------------PGLN----PKIVKLCQDL---NFP----ITPG-VNNPMAIEIA----LEMGISAVKFF 137 (224)
T ss_dssp EC--------------SSCC----HHHHHHHHHT---TCC----EECE-ECSHHHHHHH----HHTTCCEEEET
T ss_pred EE--------------CCCC----HHHHHHHHHh---CCC----EEec-cCCHHHHHHH----HHCCCCEEEEe
Confidence 22 1211 4566777773 332 3446 3588887553 47899999985
|
| >3chv_A Prokaryotic domain of unknown function (DUF849) W barrel fold; TIM barrel fold, structural genomics, joint center for struc genomics; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A | Back alignment and structure |
|---|
Probab=90.38 E-value=1.9 Score=40.96 Aligned_cols=159 Identities=12% Similarity=0.138 Sum_probs=93.5
Q ss_pred ccCCCCcCCCCCCC--CCC-CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEee
Q 017200 138 TCTRGCRFCNVKTS--RAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL 214 (375)
Q Consensus 138 ~C~~~C~FC~v~~~--r~~-~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l 214 (375)
.|.--|.-+.-... ..| .|++++|+.+.|.+..+.|..-|+|=-=|.+.-+....+.|.+++..|++..|++.|.+.
T Consensus 9 ~viIt~A~tGa~~t~~~~P~lPvTpeEia~~A~~~~~AGAaivHlH~Rd~~G~ps~d~~~~~e~~~~IR~~~pd~ii~~T 88 (284)
T 3chv_A 9 PCIICVAITGSVPTKADNPAVPITVSEQVESTQEAFEAGAAIAHCHVRNDDGTPSSDPDRFARLTEGLHTHCPGMIVQFS 88 (284)
T ss_dssp CBCEEEECCCSSCCTTTCTTCCCSHHHHHHHHHHHHHHTCCEEEECEECTTSCEECCHHHHHHHHHHHHHHSTTCEEEEC
T ss_pred CeEEEEecCCCcCCcccCCCCCCCHHHHHHHHHHHHHcCCcEEEeeecCCCCCcCCCHHHHHHHHHHHHHhCCCeEEEeC
Confidence 33344544443222 234 368999999999999999998887765443222222378899999999998899999887
Q ss_pred cCCCC-CChHHHHHHHHcCcccccccc--------------cchHHHHHHhcCCC-------CCHHHHHHHHHHHHHhCC
Q 017200 215 VPDFR-GNNGCVREVAKSGLNVFAHNI--------------ETVEELQSAVRDHR-------ANFKQSLDVLMMAKDYVP 272 (375)
Q Consensus 215 ~pd~~-g~~e~l~~L~~aGldv~~hnl--------------Etv~rl~~~mr~r~-------~s~~~~l~vl~~ak~~~p 272 (375)
++.-. ...+.+..+ +..+|....|. +.+++++..|+.++ ++..+-..+ ..+.+
T Consensus 89 Tgg~~~~~eeR~~~~-~~~Pe~aSl~~Gs~Nf~~~v~~n~~~~~~~~~~~~~e~Gv~pE~e~fd~g~l~~~-~~l~~--- 163 (284)
T 3chv_A 89 TGGRSGAGQARGGML-PLKPDMASLSVGSNNFPSRVYENPPDLVDWLAAQMRSYRVTPEIEAFDLSHILRA-IDMHG--- 163 (284)
T ss_dssp CCTTTCCGGGGGTTG-GGCCSEEEECCSCEECSSSEECCCHHHHHHHHHHHHHHTCEEEEEESSHHHHHHH-HHHHH---
T ss_pred CCCCCCCHHHHHHhh-hcCCCEEEecCcccccCCccccCCHHHHHHHHHHHHHcCCEEEEEEECHHHHHHH-HHHHH---
Confidence 74321 123444444 55667654432 12456666655322 333343333 33333
Q ss_pred CCc---eEEEeEEEec----CCCHHHHHHHHHHHHH
Q 017200 273 AGT---LTKTSIMLGC----GETPDQVVSTMEKVRA 301 (375)
Q Consensus 273 ~Gl---~tkt~imvGl----GET~ee~~etl~~Lre 301 (375)
.|+ ..-..+++|. +-+.+++...+..+-+
T Consensus 164 ~Gll~~p~~~~~vlGv~~g~~~~~~~L~~~~~~~p~ 199 (284)
T 3chv_A 164 RGLLYGKLYVQFVMGVKNAMPADREVFDFYVRMMRT 199 (284)
T ss_dssp TTCSCSSCEEEEEECCTTSCCCCHHHHHHHHHHHHH
T ss_pred cCCCCCCceEEEEEecCCCCCCCHHHHHHHHHhccC
Confidence 244 3344455554 5567777777766654
|
| >2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=90.34 E-value=1.1 Score=43.33 Aligned_cols=140 Identities=10% Similarity=0.075 Sum_probs=77.9
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEee-eCCC--CCc-ccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSV-DRDD--LAD-QGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKS 231 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsg-dr~d--l~d-~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~a 231 (375)
..+.+++++.|+++.+.|.+-|-|=|. .|+. ... .-.+.+..+|+.|++..|++.|.+=+ + +.+.++.-.++
T Consensus 61 ~~~~~~a~~~A~~~v~~GAdIIDIGgeSTrPG~~v~~~eEl~Rv~pvI~~l~~~~~~vpISIDT--~--~~~VaeaAl~a 136 (318)
T 2vp8_A 61 TFSDAAARDAVHRAVADGADVIDVGGVKAGPGERVDVDTEITRLVPFIEWLRGAYPDQLISVDT--W--RAQVAKAACAA 136 (318)
T ss_dssp ---CHHHHHHHHHHHHTTCSEEEEC----------CHHHHHHHHHHHHHHHHHHSTTCEEEEEC--S--CHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEeC--C--CHHHHHHHHHh
Confidence 368899999999999999999988764 2443 111 11345667788888877677665432 2 56777777777
Q ss_pred Ccccccc-cccchHHHHHH----------hcCCC---------CCH------------HHHHHHHHHHHHhCCCCce---
Q 017200 232 GLNVFAH-NIETVEELQSA----------VRDHR---------ANF------------KQSLDVLMMAKDYVPAGTL--- 276 (375)
Q Consensus 232 Gldv~~h-nlEtv~rl~~~----------mr~r~---------~s~------------~~~l~vl~~ak~~~p~Gl~--- 276 (375)
|.+.++- +-+..+++++- |+.++ ..| +...+.++.+.+ .|+.
T Consensus 137 Ga~iINDVsg~~d~~m~~vaa~~g~~vVlmh~~G~~p~tmq~~~~y~~~~~dv~~ev~~~l~~~i~~a~~---aGI~~~~ 213 (318)
T 2vp8_A 137 GADLINDTWGGVDPAMPEVAAEFGAGLVCAHTGGALPRTRPFRVSYGTTTRGVVDAVISQVTAAAERAVA---AGVAREK 213 (318)
T ss_dssp TCCEEEETTSSSSTTHHHHHHHHTCEEEEECC-------------CCSCHHHHHHHHHHHHHHHHHHHHH---TTCCGGG
T ss_pred CCCEEEECCCCCchHHHHHHHHhCCCEEEECCCCCCccccccccccccccccHHHHHHHHHHHHHHHHHH---cCCChhh
Confidence 8776642 11112233221 22111 112 223344566666 4653
Q ss_pred EEEeEEEecCCCHHHHHHHHHHHHHc
Q 017200 277 TKTSIMLGCGETPDQVVSTMEKVRAA 302 (375)
Q Consensus 277 tkt~imvGlGET~ee~~etl~~Lrel 302 (375)
+--+--+|||.|.++-+++|+.++++
T Consensus 214 IilDPG~GF~Kt~~~nl~ll~~l~~l 239 (318)
T 2vp8_A 214 VLIDPAHDFGKNTFHGLLLLRHVADL 239 (318)
T ss_dssp EEEETTTTCCTTSHHHHHHHHTHHHH
T ss_pred EEEcCCCCcccCHHHHHHHHHHHHHH
Confidence 44444457888888877777766654
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=90.23 E-value=8.2 Score=34.73 Aligned_cols=112 Identities=16% Similarity=0.179 Sum_probs=78.4
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.++++.++.++++.+.|++-|.|+- +. ++ -.+.++.+++.+|++.+..=+ +. +.+.++...++|.|.+
T Consensus 25 ~~~~~~~~~~~al~~gGv~~iel~~--k~--~~-----~~~~i~~l~~~~~~~~vgagt--vi-~~d~~~~A~~aGAd~v 92 (214)
T 1wbh_A 25 KKLEHAVPMAKALVAGGVRVLNVTL--RT--EC-----AVDAIRAIAKEVPEAIVGAGT--VL-NPQQLAEVTEAGAQFA 92 (214)
T ss_dssp SSGGGHHHHHHHHHHTTCCEEEEES--CS--TT-----HHHHHHHHHHHCTTSEEEEES--CC-SHHHHHHHHHHTCSCE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeC--CC--hh-----HHHHHHHHHHHCcCCEEeeCE--EE-EHHHHHHHHHcCCCEE
Confidence 4788999999999999999998882 21 11 246888888888887766533 22 6789999999999976
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
.-. ..+ .++++.+++. |+ .+|.| -.|.+|+.+. .+.|.|++.+|
T Consensus 93 ~~p--------------~~d----~~v~~~~~~~---g~----~~i~G-~~t~~e~~~A----~~~Gad~v~~F 136 (214)
T 1wbh_A 93 ISP--------------GLT----EPLLKAATEG---TI----PLIPG-ISTVSELMLG----MDYGLKEFKFF 136 (214)
T ss_dssp EES--------------SCC----HHHHHHHHHS---SS----CEEEE-ESSHHHHHHH----HHTTCCEEEET
T ss_pred EcC--------------CCC----HHHHHHHHHh---CC----CEEEe-cCCHHHHHHH----HHCCCCEEEEe
Confidence 321 111 3566666663 43 34556 3578887554 37899999985
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=89.67 E-value=11 Score=34.32 Aligned_cols=112 Identities=19% Similarity=0.287 Sum_probs=77.9
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.++++.++.++++.+.|++-|-|+- +. + .-.+.++.+++.+|++.+.+=+. + +.+.++...++|.|.+
T Consensus 35 ~~~~~~~~~~~al~~gGv~~iel~~--k~--~-----~~~~~i~~l~~~~~~~~igagtv-l--~~d~~~~A~~aGAd~v 102 (225)
T 1mxs_A 35 AREEDILPLADALAAGGIRTLEVTL--RS--Q-----HGLKAIQVLREQRPELCVGAGTV-L--DRSMFAAVEAAGAQFV 102 (225)
T ss_dssp SCGGGHHHHHHHHHHTTCCEEEEES--SS--T-----HHHHHHHHHHHHCTTSEEEEECC-C--SHHHHHHHHHHTCSSE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEec--CC--c-----cHHHHHHHHHHhCcccEEeeCeE-e--eHHHHHHHHHCCCCEE
Confidence 3678999999999999999998882 21 1 13467888888889888765443 3 6789999999999976
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
.-. ..+ .++++.+++ .|+ .+|.| -.|.+|+.+.+ +.|.|++.+|
T Consensus 103 ~~p--------------~~d----~~v~~~~~~---~g~----~~i~G-~~t~~e~~~A~----~~Gad~vk~F 146 (225)
T 1mxs_A 103 VTP--------------GIT----EDILEAGVD---SEI----PLLPG-ISTPSEIMMGY----ALGYRRFKLF 146 (225)
T ss_dssp ECS--------------SCC----HHHHHHHHH---CSS----CEECE-ECSHHHHHHHH----TTTCCEEEET
T ss_pred EeC--------------CCC----HHHHHHHHH---hCC----CEEEe-eCCHHHHHHHH----HCCCCEEEEc
Confidence 321 111 356666666 233 34556 35777765543 7899998885
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=89.46 E-value=2 Score=40.43 Aligned_cols=165 Identities=10% Similarity=0.110 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHhCCCcEEEeecC-C--CCCChHHHHHHHHcCcccccccccc---------hH-HHHHHhcCCCCCHHHH
Q 017200 194 HFAQTVRKLKELKPNMLIEALVP-D--FRGNNGCVREVAKSGLNVFAHNIET---------VE-ELQSAVRDHRANFKQS 260 (375)
Q Consensus 194 ~~~~lir~Ik~~~p~i~Ie~l~p-d--~~g~~e~l~~L~~aGldv~~hnlEt---------v~-rl~~~mr~r~~s~~~~ 260 (375)
++.+.++.+++......|-.++. | +....+.++.|.++|+|.+..++.. +. .-.+.+. .+.+.++.
T Consensus 4 ri~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~-~G~~~~~~ 82 (267)
T 3vnd_A 4 RYQAKFAALKAQDKGAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLA-AGTTSSDC 82 (267)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHH-TTCCHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHH-cCCCHHHH
Confidence 45667777776654455554442 2 2223667888889999988777422 22 1223344 57889999
Q ss_pred HHHHHHHHHhCCCCceEEEeEEEecCC-CH-H--HHHHHHHHHHHcCCcEEeeecCCCCCC----------CCCCccccC
Q 017200 261 LDVLMMAKDYVPAGTLTKTSIMLGCGE-TP-D--QVVSTMEKVRAAGVDVMTFGQYMRPSK----------RHMPVSEYI 326 (375)
Q Consensus 261 l~vl~~ak~~~p~Gl~tkt~imvGlGE-T~-e--e~~etl~~Lrelgvd~v~i~qYl~P~~----------~~~~v~~~v 326 (375)
++.++.+++..+. ++ ..+| +. +. . -+...++.+.+.|+|.+.+ .-+.+.. .++...-.+
T Consensus 83 ~~~v~~ir~~~~~-~P--ivlm---~Y~npv~~~g~e~f~~~~~~aGvdgvii-~Dlp~ee~~~~~~~~~~~gl~~i~li 155 (267)
T 3vnd_A 83 FDIITKVRAQHPD-MP--IGLL---LYANLVFANGIDEFYTKAQAAGVDSVLI-ADVPVEESAPFSKAAKAHGIAPIFIA 155 (267)
T ss_dssp HHHHHHHHHHCTT-CC--EEEE---ECHHHHHHHCHHHHHHHHHHHTCCEEEE-TTSCGGGCHHHHHHHHHTTCEEECEE
T ss_pred HHHHHHHHhcCCC-CC--EEEE---ecCcHHHHhhHHHHHHHHHHcCCCEEEe-CCCCHhhHHHHHHHHHHcCCeEEEEE
Confidence 9999999985322 22 2222 22 11 0 1255677888889998877 3332210 123322233
Q ss_pred CHH-HHHHHHHHHHH-hhhhhhccch---hhhhhcchh-HHHHHHH
Q 017200 327 TPE-AFERYRALGME-MGFRYVASGP---MVRSSYKVV-GWCYYLI 366 (375)
Q Consensus 327 ~pe-~~~~l~~~a~~-~gf~~~~sgp---~vrssy~a~-~~~~~~~ 366 (375)
.|. ..++++.++.. -||.|+.|-. -.|+.+... ..+++.|
T Consensus 156 aP~t~~eri~~i~~~~~gfvY~vS~~GvTG~~~~~~~~~~~~v~~v 201 (267)
T 3vnd_A 156 PPNADADTLKMVSEQGEGYTYLLSRAGVTGTESKAGEPIENILTQL 201 (267)
T ss_dssp CTTCCHHHHHHHHHHCCSCEEESCCCCCC--------CHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhCCCcEEEEecCCCCCCccCCcHHHHHHHHHH
Confidence 342 24677777665 4799985432 255544332 3445444
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=88.93 E-value=1.6 Score=39.40 Aligned_cols=132 Identities=17% Similarity=0.212 Sum_probs=77.6
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC-CcEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NMLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p-~i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
.|.....+.++.+.+.|++.+.|---|....+.. ..-.+.++.|++..+ .+.+.+++-| ..+.++.+.++|+|.
T Consensus 16 ~d~~~l~~~i~~~~~~Gad~i~l~i~Dg~fv~~~--~~~~~~~~~lr~~~~~~~~v~lmv~d---~~~~i~~~~~agad~ 90 (228)
T 1h1y_A 16 SDFANLAAEADRMVRLGADWLHMDIMDGHFVPNL--TIGAPVIQSLRKHTKAYLDCHLMVTN---PSDYVEPLAKAGASG 90 (228)
T ss_dssp SCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCB--CBCHHHHHHHHTTCCSEEEEEEESSC---GGGGHHHHHHHTCSE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEEecCCcCcch--hhCHHHHHHHHhhcCCcEEEEEEecC---HHHHHHHHHHcCCCE
Confidence 5778888999999999999887765554332221 111377888887653 2345556533 234688889999998
Q ss_pred ccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHc--CCcEEeeecCC
Q 017200 236 FAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAA--GVDVMTFGQYM 313 (375)
Q Consensus 236 ~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrel--gvd~v~i~qYl 313 (375)
+....|..+.. ..++++.+++ .|+.+ ++.+. -.|+.+. ++.+.+. ++|++.+....
T Consensus 91 v~vH~~~~~~~-------------~~~~~~~i~~---~g~~i--gv~~~-p~t~~e~---~~~~~~~~~~~d~vl~~sv~ 148 (228)
T 1h1y_A 91 FTFHIEVSRDN-------------WQELIQSIKA---KGMRP--GVSLR-PGTPVEE---VFPLVEAENPVELVLVMTVE 148 (228)
T ss_dssp EEEEGGGCTTT-------------HHHHHHHHHH---TTCEE--EEEEC-TTSCGGG---GHHHHHSSSCCSEEEEESSC
T ss_pred EEECCCCcccH-------------HHHHHHHHHH---cCCCE--EEEEe-CCCCHHH---HHHHHhcCCCCCEEEEEeec
Confidence 86554432211 0244555555 35432 23332 2344443 3344555 78988886543
Q ss_pred CCC
Q 017200 314 RPS 316 (375)
Q Consensus 314 ~P~ 316 (375)
|+
T Consensus 149 -pg 150 (228)
T 1h1y_A 149 -PG 150 (228)
T ss_dssp -TT
T ss_pred -CC
Confidence 54
|
| >3lot_A Uncharacterized protein; protein of unknown function, structural genomics, joint CENT structural genomics, JCSG; HET: MSE; 1.89A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=87.95 E-value=2.8 Score=40.36 Aligned_cols=84 Identities=18% Similarity=0.163 Sum_probs=59.6
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCC-CCCcccHHHHHHHHHHHHHhCCCcEEEeecCCC--C--CChHHHHHHHH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRD-DLADQGSGHFAQTVRKLKELKPNMLIEALVPDF--R--GNNGCVREVAK 230 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~-dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~--~--g~~e~l~~L~~ 230 (375)
|++++|+.+.|.+..+.|..-|+|=.=|.+ .-+....+.|.+++..|++. +++.|...++.- . ...+.++.+.+
T Consensus 28 PvTpeEia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~y~e~i~~IR~~-~d~iI~~TTgg~~~~~~~~eeR~~~~~~ 106 (314)
T 3lot_A 28 PVTPDQIVEEAVKAAEAGAGMVHIHARDPKDGRPTTDVEVFRYICREIKKQ-SDVVINVTTGGGGTLGIPVEERAKVVPA 106 (314)
T ss_dssp CCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHHHHHHHHHHH-CCCEEEECSSTTGGGTCCHHHHTTHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCcCCCHHHHHHHHHHHHhc-CCeEEEeCCCCcCCCCCCHHHHHHHHHh
Confidence 689999999999999999987777654422 22222377899999999987 688888777521 1 23455666666
Q ss_pred cCcccccccc
Q 017200 231 SGLNVFAHNI 240 (375)
Q Consensus 231 aGldv~~hnl 240 (375)
..+|....|.
T Consensus 107 ~~Pe~aSln~ 116 (314)
T 3lot_A 107 LKPEIATFNM 116 (314)
T ss_dssp HCCSEEEEEC
T ss_pred cCCceeeecC
Confidence 6777665543
|
| >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A | Back alignment and structure |
|---|
Probab=87.66 E-value=3.3 Score=44.27 Aligned_cols=138 Identities=16% Similarity=0.093 Sum_probs=88.2
Q ss_pred CCcchHHHHHHHHHhcC--CcEEEEEeeeCCC--CCcccHHHHHHHHHHHHHhCCCcEEEeecCC--CCC--------Ch
Q 017200 157 PDPDEPTNVAEAIASWG--LDYVVITSVDRDD--LADQGSGHFAQTVRKLKELKPNMLIEALVPD--FRG--------NN 222 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G--~~eIvLTsgdr~d--l~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd--~~g--------~~ 222 (375)
++.++.+++|+++.+.| +..|-+.||..-| ++-.+.. =.+.++.|++..|++.+..+.-. ..| ..
T Consensus 122 ~~~edkl~Ia~~Ld~~Gvg~~~IE~gGGatfd~~~~f~~e~-p~e~l~~l~~~~~~~~l~~l~R~~n~vgy~~~p~~~~~ 200 (718)
T 3bg3_A 122 VRTHDLKKIAPYVAHNFSKLFSMENWGGATFDVAMRFLYEC-PWRRLQELRELIPNIPFQMLLRGANAVGYTNYPDNVVF 200 (718)
T ss_dssp CCHHHHHHHHHHHHHHCTTCSEEEEEETTHHHHHHHTSCCC-HHHHHHHHHHHCSSSCEEEEECGGGTTSSSCCCHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEecCCcchhhccccCCCC-HHHHHHHHHHHcccchHHHHhcccccccccccCCcchH
Confidence 78999999999999985 6669888664311 0000001 13567777777788877755421 111 24
Q ss_pred HHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEe---c-C--C--CHHHHHH
Q 017200 223 GCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG---C-G--E--TPDQVVS 294 (375)
Q Consensus 223 e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvG---l-G--E--T~ee~~e 294 (375)
+.++...++|+|++....-.. ..+.....++.+++ .|..+...+.+. . + - +.+.+++
T Consensus 201 ~~i~~a~~~Gvd~irIf~s~n------------~l~~l~~~i~~ak~---~G~~v~~~i~~~~d~~dp~r~~~~~e~~~~ 265 (718)
T 3bg3_A 201 KFCEVAKENGMDVFRVFDSLN------------YLPNMLLGMEAAGS---AGGVVEAAISYTGDVADPSRTKYSLQYYMG 265 (718)
T ss_dssp HHHHHHHHHTCCEEEEECSSC------------CHHHHHHHHHHHHT---TTSEEEEEEECCSCTTCTTCCTTCHHHHHH
T ss_pred HHHHHHHhcCcCEEEEEecHH------------HHHHHHHHHHHHHH---cCCeEEEEEEeeccccCCCCCCCCHHHHHH
Confidence 667888999999876542211 23444566677777 466666656555 1 1 1 6677888
Q ss_pred HHHHHHHcCCcEEeee
Q 017200 295 TMEKVRAAGVDVMTFG 310 (375)
Q Consensus 295 tl~~Lrelgvd~v~i~ 310 (375)
.++.+.+.|++.|.|.
T Consensus 266 ~a~~l~~~Ga~~I~l~ 281 (718)
T 3bg3_A 266 LAEELVRAGTHILCIK 281 (718)
T ss_dssp HHHHHHHHTCSEEEEE
T ss_pred HHHHHHHcCCCEEEEc
Confidence 8888888888888773
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=86.92 E-value=1.8 Score=39.11 Aligned_cols=76 Identities=9% Similarity=0.125 Sum_probs=51.2
Q ss_pred chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc
Q 017200 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (375)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn 239 (375)
.++.+.++.+.+.|++.+++..-+....+ ...+ +.++.|++.. ++.+. ......+++.++.+.++|+|.+..+
T Consensus 32 ~d~~~~a~~~~~~Gad~i~v~~~d~~~~~---~~~~-~~i~~i~~~~-~ipv~--v~ggI~~~~~~~~~l~~Gad~V~lg 104 (244)
T 1vzw_A 32 GSPLEAALAWQRSGAEWLHLVDLDAAFGT---GDNR-ALIAEVAQAM-DIKVE--LSGGIRDDDTLAAALATGCTRVNLG 104 (244)
T ss_dssp CCHHHHHHHHHHTTCSEEEEEEHHHHHTS---CCCH-HHHHHHHHHC-SSEEE--EESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred CCHHHHHHHHHHcCCCEEEEecCchhhcC---CChH-HHHHHHHHhc-CCcEE--EECCcCCHHHHHHHHHcCCCEEEEC
Confidence 37888899999999999998754321111 1225 8888998765 34332 2222236788999999999988765
Q ss_pred ccc
Q 017200 240 IET 242 (375)
Q Consensus 240 lEt 242 (375)
.+.
T Consensus 105 ~~~ 107 (244)
T 1vzw_A 105 TAA 107 (244)
T ss_dssp HHH
T ss_pred chH
Confidence 443
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=86.62 E-value=1.6 Score=41.15 Aligned_cols=150 Identities=11% Similarity=0.196 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHhCCCcEEEeec---CCCCCChHHHHHHHHcCcccccccccc---------hH-HHHHHhcCCCCCHHHH
Q 017200 194 HFAQTVRKLKELKPNMLIEALV---PDFRGNNGCVREVAKSGLNVFAHNIET---------VE-ELQSAVRDHRANFKQS 260 (375)
Q Consensus 194 ~~~~lir~Ik~~~p~i~Ie~l~---pd~~g~~e~l~~L~~aGldv~~hnlEt---------v~-rl~~~mr~r~~s~~~~ 260 (375)
++.++++.+++......|-.++ |++....+.++.|.++|+|.+..++.. .. .-.+.+. .+.+.++.
T Consensus 6 ri~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~-~G~~~~~~ 84 (271)
T 3nav_A 6 RYQALFQRLSAAQQGAFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALA-AKTTPDIC 84 (271)
T ss_dssp HHHHHHHHHHHTTBCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHH-TTCCHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHH-cCCCHHHH
Confidence 4566777777655445555444 233224667788888899988777432 11 2233455 57889999
Q ss_pred HHHHHHHHHhCCCCceEEEeEEEecCCCHHH--HHHHHHHHHHcCCcEEeeecCCCCCC----------CCCCccccCCH
Q 017200 261 LDVLMMAKDYVPAGTLTKTSIMLGCGETPDQ--VVSTMEKVRAAGVDVMTFGQYMRPSK----------RHMPVSEYITP 328 (375)
Q Consensus 261 l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee--~~etl~~Lrelgvd~v~i~qYl~P~~----------~~~~v~~~v~p 328 (375)
++.++.+++..+. +++ -+| |.-..... +...++.+.+.|+|.+-+. =+.+.. .++.+.-.+.|
T Consensus 85 ~~~v~~~r~~~~~-~Pi--vlm-~Y~n~v~~~g~~~f~~~~~~aGvdGvIip-Dlp~ee~~~~~~~~~~~gl~~I~lvap 159 (271)
T 3nav_A 85 FELIAQIRARNPE-TPI--GLL-MYANLVYARGIDDFYQRCQKAGVDSVLIA-DVPTNESQPFVAAAEKFGIQPIFIAPP 159 (271)
T ss_dssp HHHHHHHHHHCTT-SCE--EEE-ECHHHHHHTCHHHHHHHHHHHTCCEEEET-TSCGGGCHHHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHhcCCC-CCE--EEE-ecCcHHHHHhHHHHHHHHHHCCCCEEEEC-CCCHHHHHHHHHHHHHcCCeEEEEECC
Confidence 9999999875322 221 122 22111111 2556777888888887662 222200 12222222333
Q ss_pred H-HHHHHHHHHHH-hhhhhhccc
Q 017200 329 E-AFERYRALGME-MGFRYVASG 349 (375)
Q Consensus 329 e-~~~~l~~~a~~-~gf~~~~sg 349 (375)
. ..++++.++.. -||.|+.|-
T Consensus 160 ~t~~eri~~i~~~~~gfiY~vs~ 182 (271)
T 3nav_A 160 TASDETLRAVAQLGKGYTYLLSR 182 (271)
T ss_dssp TCCHHHHHHHHHHCCSCEEECCC
T ss_pred CCCHHHHHHHHHHCCCeEEEEec
Confidence 2 23566666554 589998554
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=86.39 E-value=8.5 Score=39.08 Aligned_cols=131 Identities=17% Similarity=0.258 Sum_probs=83.8
Q ss_pred chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc
Q 017200 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (375)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn 239 (375)
++..+.++++.+.|++.|+|.+.+.. ...+.+.|+.|++.+|++.|-+ +.. .+.+..+.+.++|+|.+-.+
T Consensus 230 ~d~~~~a~~l~~aG~d~I~id~a~g~------~~~~~~~i~~ir~~~p~~~Vi~--g~v-~t~e~a~~l~~aGaD~I~Vg 300 (496)
T 4fxs_A 230 PGNEERVKALVEAGVDVLLIDSSHGH------SEGVLQRIRETRAAYPHLEIIG--GNV-ATAEGARALIEAGVSAVKVG 300 (496)
T ss_dssp SCCHHHHHHHHHTTCSEEEEECSCTT------SHHHHHHHHHHHHHCTTCCEEE--EEE-CSHHHHHHHHHHTCSEEEEC
T ss_pred cchHHHHHHHHhccCceEEecccccc------chHHHHHHHHHHHHCCCceEEE--ccc-CcHHHHHHHHHhCCCEEEEC
Confidence 45577788899999999999876531 3567899999999988765433 111 16788999999999987543
Q ss_pred -----ccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 240 -----IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 240 -----lEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
.-+. +...-+. ...+....++.+.+++. +++ +|..- --|.+|+...+. +|.+.|-+|..+
T Consensus 301 ~g~Gs~~~t-r~~~g~g--~p~~~~i~~v~~~~~~~---~iP----VIa~GGI~~~~di~kala----~GAd~V~iGs~f 366 (496)
T 4fxs_A 301 IGPGSICTT-RIVTGVG--VPQITAIADAAGVANEY---GIP----VIADGGIRFSGDISKAIA----AGASCVMVGSMF 366 (496)
T ss_dssp SSCCTTBCH-HHHHCCC--CCHHHHHHHHHHHHGGG---TCC----EEEESCCCSHHHHHHHHH----TTCSEEEESTTT
T ss_pred CCCCcCccc-ccccCCC--ccHHHHHHHHHHHhccC---CCe----EEEeCCCCCHHHHHHHHH----cCCCeEEecHHH
Confidence 1111 2211121 23444445555555542 333 33322 258888887763 699999898665
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=86.35 E-value=5.2 Score=37.09 Aligned_cols=153 Identities=14% Similarity=0.150 Sum_probs=90.3
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCc--ccHHHHHHHHHHHHHhCCCcEEE--eecCCCCCChHHHHHHHHcC
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD--QGSGHFAQTVRKLKELKPNMLIE--ALVPDFRGNNGCVREVAKSG 232 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d--~G~~~~~~lir~Ik~~~p~i~Ie--~l~pd~~g~~e~l~~L~~aG 232 (375)
.|...+.+.++.+.+.|++.+++==.|..-.|. .| ..++++|++..|+..+. +.+-+ ....++.+.++|
T Consensus 37 aD~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpnit~G----~~~v~~lr~~~p~~~ldvHLmv~~---p~~~i~~~~~aG 109 (246)
T 3inp_A 37 ADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFG----PMVLKALRDYGITAGMDVHLMVKP---VDALIESFAKAG 109 (246)
T ss_dssp SCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCC----HHHHHHHHHHTCCSCEEEEEECSS---CHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEecCCCcCcchhcC----HHHHHHHHHhCCCCeEEEEEeeCC---HHHHHHHHHHcC
Confidence 688889999999999999988776555433332 23 46788888877655443 33322 245789999999
Q ss_pred cccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecC
Q 017200 233 LNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQY 312 (375)
Q Consensus 233 ldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qY 312 (375)
+|.+....|+.+. ..++++.+|+ .|+ +.++.+- -.|+.+.++-+. + ++|.|.+. -
T Consensus 110 Ad~itvH~Ea~~~--------------~~~~i~~ir~---~G~--k~Gvaln-p~Tp~e~l~~~l---~-~vD~VlvM-s 164 (246)
T 3inp_A 110 ATSIVFHPEASEH--------------IDRSLQLIKS---FGI--QAGLALN-PATGIDCLKYVE---S-NIDRVLIM-S 164 (246)
T ss_dssp CSEEEECGGGCSC--------------HHHHHHHHHT---TTS--EEEEEEC-TTCCSGGGTTTG---G-GCSEEEEE-C
T ss_pred CCEEEEccccchh--------------HHHHHHHHHH---cCC--eEEEEec-CCCCHHHHHHHH---h-cCCEEEEe-e
Confidence 9999887775431 1345566666 464 5555443 334444433221 1 46776553 1
Q ss_pred CCCCCCCCCccccCCHHHHHHHHHHHHHhh
Q 017200 313 MRPSKRHMPVSEYITPEAFERYRALGMEMG 342 (375)
Q Consensus 313 l~P~~~~~~v~~~v~pe~~~~l~~~a~~~g 342 (375)
..|+..+.+..+ -..++.++|+++..+.|
T Consensus 165 V~PGfgGQ~fi~-~~l~KI~~lr~~~~~~~ 193 (246)
T 3inp_A 165 VNPGFGGQKFIP-AMLDKAKEISKWISSTD 193 (246)
T ss_dssp SCTTC--CCCCT-THHHHHHHHHHHHHHHT
T ss_pred ecCCCCCcccch-HHHHHHHHHHHHHHhcC
Confidence 246443322221 12356677776665555
|
| >3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=86.02 E-value=12 Score=35.88 Aligned_cols=138 Identities=14% Similarity=0.131 Sum_probs=80.4
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEee-eCCCCC--------cccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHH
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSV-DRDDLA--------DQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVRE 227 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsg-dr~dl~--------d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~ 227 (375)
.+++++++.|+++.+.|.+.|-|=|. .+|.-. +.-.+.+..+|+.|++.. ++.|.+=+ + +.+.++.
T Consensus 46 ~~~~~al~~A~~~v~~GAdIIDIGgeSTrPga~~~~~~V~~~eE~~Rv~pvI~~l~~~~-~vpISIDT--~--~~~Va~a 120 (314)
T 3tr9_A 46 LDLNSALRTAEKMVDEGADILDIGGEATNPFVDIKTDSPSTQIELDRLLPVIDAIKKRF-PQLISVDT--S--RPRVMRE 120 (314)
T ss_dssp CSHHHHHHHHHHHHHTTCSEEEEECCCSCTTC-----CHHHHHHHHHHHHHHHHHHHHC-CSEEEEEC--S--CHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhC-CCeEEEeC--C--CHHHHHH
Confidence 57899999999999999999887653 454322 011334667777887653 45554322 2 5778888
Q ss_pred HHHcCcccccc-cccchHHHHHH----------hcCCC--C------C-------HHHHHHHHHHHHHhCCCCce---EE
Q 017200 228 VAKSGLNVFAH-NIETVEELQSA----------VRDHR--A------N-------FKQSLDVLMMAKDYVPAGTL---TK 278 (375)
Q Consensus 228 L~~aGldv~~h-nlEtv~rl~~~----------mr~r~--~------s-------~~~~l~vl~~ak~~~p~Gl~---tk 278 (375)
-.++|.+.++- +-+..+++++- |..++ . . .+...+.++.+.+ .|+. +-
T Consensus 121 Al~aGa~iINDVsg~~~~~m~~v~a~~g~~vVlMh~~G~P~tmq~~~~ydvv~ev~~~l~~~i~~a~~---~GI~~~~Ii 197 (314)
T 3tr9_A 121 AVNTGADMINDQRALQLDDALTTVSALKTPVCLMHFPSETRKPGSTTHFYFLQSVKKELQESIQRCKK---AGISEDRII 197 (314)
T ss_dssp HHHHTCCEEEETTTTCSTTHHHHHHHHTCCEEEECCCCTTCCTTSSCHHHHHHHHHHHHHHHHHHHHH---TTCCGGGEE
T ss_pred HHHcCCCEEEECCCCCchHHHHHHHHhCCeEEEECCCCCCcccccccccchHHHHHHHHHHHHHHHHH---cCCCHhHEE
Confidence 88888887643 11122233332 11111 1 1 2233345556666 4653 33
Q ss_pred EeEEEe---cCCCHHHHHHHHHHHHHc
Q 017200 279 TSIMLG---CGETPDQVVSTMEKVRAA 302 (375)
Q Consensus 279 t~imvG---lGET~ee~~etl~~Lrel 302 (375)
-+--+| ||.|.++=+++|+.|+++
T Consensus 198 lDPG~G~~~F~Kt~~~n~~lL~~l~~l 224 (314)
T 3tr9_A 198 IDPGFGQGNYGKNVSENFYLLNKLPEF 224 (314)
T ss_dssp EECCCCSGGGCCCHHHHHHHHHTTHHH
T ss_pred EeCCCCchhhcCCHHHHHHHHHHHHHH
Confidence 333358 889998777777665544
|
| >2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule biogenesis/degradation, manganese, hydrolase, exopolysaccharide synthesis; 1.90A {Streptococcus pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A | Back alignment and structure |
|---|
Probab=85.95 E-value=6.7 Score=35.50 Aligned_cols=48 Identities=17% Similarity=0.255 Sum_probs=31.3
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLK 203 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik 203 (375)
..++++.++.++++.+.|++.|++|-=...+..+...+.+.+.++.++
T Consensus 20 ~~~~e~~~e~i~~A~~~Gi~~i~~TdH~~~~~~~~~~~~~~~~~~~l~ 67 (247)
T 2wje_A 20 PKSREESKALLAESYRQGVRTIVSTSHRRKGMFETPEEKIAENFLQVR 67 (247)
T ss_dssp CSSHHHHHHHHHHHHHTTEEEEECCCEEBTTTBCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999964332222222333444444443
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=85.45 E-value=2.1 Score=38.52 Aligned_cols=75 Identities=7% Similarity=0.073 Sum_probs=51.5
Q ss_pred chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc
Q 017200 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (375)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn 239 (375)
.++.+.++++.+.|++.+++..-+....+ ...+ +.+++|++.. ++.+. ......+++.++.+.++|+|.+..+
T Consensus 31 ~d~~~~a~~~~~~Gad~i~v~~~d~~~~~---~~~~-~~i~~i~~~~-~ipv~--v~ggi~~~~~~~~~l~~Gad~V~lg 103 (244)
T 2y88_A 31 GSAVDAALGWQRDGAEWIHLVDLDAAFGR---GSNH-ELLAEVVGKL-DVQVE--LSGGIRDDESLAAALATGCARVNVG 103 (244)
T ss_dssp EEHHHHHHHHHHTTCSEEEEEEHHHHTTS---CCCH-HHHHHHHHHC-SSEEE--EESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCcccccC---CChH-HHHHHHHHhc-CCcEE--EECCCCCHHHHHHHHHcCCCEEEEC
Confidence 47889999999999999998754322111 1224 8889998865 34332 2233336788999999999988765
Q ss_pred cc
Q 017200 240 IE 241 (375)
Q Consensus 240 lE 241 (375)
.+
T Consensus 104 ~~ 105 (244)
T 2y88_A 104 TA 105 (244)
T ss_dssp HH
T ss_pred ch
Confidence 44
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=85.15 E-value=17 Score=36.78 Aligned_cols=134 Identities=16% Similarity=0.228 Sum_probs=82.9
Q ss_pred chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc
Q 017200 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (375)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn 239 (375)
++..+.++++.+.|++.|+|.+.... ...+.+.|+.+++.+|++.|-+ ++. .+.+..+.+.++|+|.+..+
T Consensus 228 ~~~~~~a~~l~~aG~d~I~id~a~g~------~~~~~~~v~~i~~~~p~~~Vi~--g~v-~t~e~a~~l~~aGaD~I~vg 298 (490)
T 4avf_A 228 ADTGERVAALVAAGVDVVVVDTAHGH------SKGVIERVRWVKQTFPDVQVIG--GNI-ATAEAAKALAEAGADAVKVG 298 (490)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECSCCS------BHHHHHHHHHHHHHCTTSEEEE--EEE-CSHHHHHHHHHTTCSEEEEC
T ss_pred cchHHHHHHHhhcccceEEecccCCc------chhHHHHHHHHHHHCCCceEEE--eee-CcHHHHHHHHHcCCCEEEEC
Confidence 46678888999999999999865432 3467899999999988765533 211 16788999999999988643
Q ss_pred cc-chHHHHHHhcCC-CCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC-CCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 240 IE-TVEELQSAVRDH-RANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 240 lE-tv~rl~~~mr~r-~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlG-ET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
.. ...-..+.+..- ...+.-..++.+.+++ .+++ +|..-| -|.+|+.+.+. +|.+.|-+|..+
T Consensus 299 ~g~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~---~~iP----VIa~GGI~~~~di~kal~----~GAd~V~vGs~~ 364 (490)
T 4avf_A 299 IGPGSICTTRIVAGVGVPQISAIANVAAALEG---TGVP----LIADGGIRFSGDLAKAMV----AGAYCVMMGSMF 364 (490)
T ss_dssp SSCSTTCHHHHHTCBCCCHHHHHHHHHHHHTT---TTCC----EEEESCCCSHHHHHHHHH----HTCSEEEECTTT
T ss_pred CCCCcCCCccccCCCCccHHHHHHHHHHHhcc---CCCc----EEEeCCCCCHHHHHHHHH----cCCCeeeecHHH
Confidence 21 111111112111 2233333444444433 2333 333222 48888888764 599999998765
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=84.99 E-value=13 Score=34.37 Aligned_cols=119 Identities=16% Similarity=0.136 Sum_probs=73.7
Q ss_pred chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc
Q 017200 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (375)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn 239 (375)
.++.+.|++..+.|..-|.+. +.+.+..+. .+.++.|++.. ++ .++..||.-++..+....++|.|.+..+
T Consensus 65 ~~p~~~A~~~~~~GA~~isvl--t~~~~f~G~----~~~l~~i~~~v-~l--Pvl~kdfI~d~~qi~~a~~~GAD~VlL~ 135 (254)
T 1vc4_A 65 VDPVEAALAYARGGARAVSVL--TEPHRFGGS----LLDLKRVREAV-DL--PLLRKDFVVDPFMLEEARAFGASAALLI 135 (254)
T ss_dssp CCHHHHHHHHHHTTCSEEEEE--CCCSSSCCC----HHHHHHHHHHC-CS--CEEEESCCCSHHHHHHHHHTTCSEEEEE
T ss_pred CCHHHHHHHHHHcCCCEEEEe--cchhhhccC----HHHHHHHHHhc-CC--CEEECCcCCCHHHHHHHHHcCCCEEEEC
Confidence 788999999999999999773 222332222 23455565543 22 2356788778878999999999988664
Q ss_pred ccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecC
Q 017200 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQY 312 (375)
Q Consensus 240 lEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qY 312 (375)
....+ ++.-+.++.++++ |+.+- +-. .+++|.. ...+++.+++.+.+.
T Consensus 136 ~~~l~-------------~~l~~l~~~a~~l---Gl~~l----vev-~~~~E~~----~a~~~gad~IGvn~~ 183 (254)
T 1vc4_A 136 VALLG-------------ELTGAYLEEARRL---GLEAL----VEV-HTERELE----IALEAGAEVLGINNR 183 (254)
T ss_dssp HHHHG-------------GGHHHHHHHHHHH---TCEEE----EEE-CSHHHHH----HHHHHTCSEEEEESB
T ss_pred ccchH-------------HHHHHHHHHHHHC---CCeEE----EEE-CCHHHHH----HHHHcCCCEEEEccc
Confidence 32111 2223555666664 55443 222 3556543 445678899998754
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=84.92 E-value=20 Score=31.77 Aligned_cols=122 Identities=18% Similarity=0.230 Sum_probs=73.8
Q ss_pred CCcc--hHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEE-EeecCCC------C-CChHHHH
Q 017200 157 PDPD--EPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLI-EALVPDF------R-GNNGCVR 226 (375)
Q Consensus 157 ld~e--Ei~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~I-e~l~pd~------~-g~~e~l~ 226 (375)
..++ ++.+.++++.+.|+..+.+.+ .+.++.|++.. ++.+ .+...+| . ...+.++
T Consensus 31 ~~~~~~~~~~~a~~~~~~G~~~i~~~~--------------~~~i~~i~~~~-~~p~i~~~~~~~~~~~~~i~~~~~~i~ 95 (234)
T 1yxy_A 31 YSETGGIMPLMAKAAQEAGAVGIRANS--------------VRDIKEIQAIT-DLPIIGIIKKDYPPQEPFITATMTEVD 95 (234)
T ss_dssp CCTTCCSHHHHHHHHHHHTCSEEEEES--------------HHHHHHHHTTC-CSCEEEECBCCCTTSCCCBSCSHHHHH
T ss_pred cCCccchHHHHHHHHHHCCCcEeecCC--------------HHHHHHHHHhC-CCCEEeeEcCCCCccccccCChHHHHH
Confidence 3567 899999999999999887631 13467777654 2333 2222221 1 1457899
Q ss_pred HHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcE
Q 017200 227 EVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDV 306 (375)
Q Consensus 227 ~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~ 306 (375)
.+.++|.|.+..+.+... ++.+. ...++++.+++.+| |+. ++++. .|.++ +..+.+.|+|+
T Consensus 96 ~~~~~Gad~V~l~~~~~~------~~~~~---~~~~~i~~i~~~~~-~~~----v~~~~-~t~~e----a~~a~~~Gad~ 156 (234)
T 1yxy_A 96 QLAALNIAVIAMDCTKRD------RHDGL---DIASFIRQVKEKYP-NQL----LMADI-STFDE----GLVAHQAGIDF 156 (234)
T ss_dssp HHHTTTCSEEEEECCSSC------CTTCC---CHHHHHHHHHHHCT-TCE----EEEEC-SSHHH----HHHHHHTTCSE
T ss_pred HHHHcCCCEEEEcccccC------CCCCc---cHHHHHHHHHHhCC-CCe----EEEeC-CCHHH----HHHHHHcCCCE
Confidence 999999998865443211 10011 23567778887654 343 23333 46655 55667889999
Q ss_pred E--eeecC
Q 017200 307 M--TFGQY 312 (375)
Q Consensus 307 v--~i~qY 312 (375)
| +++.+
T Consensus 157 i~~~v~g~ 164 (234)
T 1yxy_A 157 VGTTLSGY 164 (234)
T ss_dssp EECTTTTS
T ss_pred Eeeecccc
Confidence 9 56544
|
| >3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A* | Back alignment and structure |
|---|
Probab=84.91 E-value=2.1 Score=41.04 Aligned_cols=60 Identities=15% Similarity=0.138 Sum_probs=43.4
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCC-C---c--ccHHHHHHHHHHHHHhCCC-cEEEe-ecC
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDL-A---D--QGSGHFAQTVRKLKELKPN-MLIEA-LVP 216 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl-~---d--~G~~~~~~lir~Ik~~~p~-i~Ie~-l~p 216 (375)
.+.+++...+..+.+.|++.|+...||.+.. . + +|+.+-.++|+.|++.+++ ..|.+ ..|
T Consensus 83 ~~~~~l~~~L~~~~~~GI~niLaLrGD~p~~~g~~~~~~~~f~~a~~Lv~~ir~~~g~~f~igvA~yP 150 (310)
T 3apt_A 83 QSRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRPHPEGFRYAAELVALIRERYGDRVSVGGAAYP 150 (310)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEEECCCCSTTCCSCCCCTTSCSSHHHHHHHHHHHHGGGSEEEEEECT
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 4678999999999999999999999985432 1 1 2366677888888876444 56654 445
|
| >3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A* | Back alignment and structure |
|---|
Probab=84.48 E-value=3.3 Score=39.58 Aligned_cols=79 Identities=19% Similarity=0.184 Sum_probs=48.9
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEe-ecCCCC---CCh-HHHHHH---
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA-LVPDFR---GNN-GCVREV--- 228 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~-l~pd~~---g~~-e~l~~L--- 228 (375)
.+.+++...+..+.+.|++.|+...||.+...+++..+-.++|+.|++.. +..|.+ ..|+.. .+. ..++.|
T Consensus 94 ~~~~~l~~~L~~~~~~GI~nILaLrGDpp~~~~~~~~~A~dLv~~ir~~~-~f~IgvA~yPE~Hp~a~~~~~d~~~Lk~K 172 (304)
T 3fst_A 94 ATPDELRTIARDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEVA-DFDISVAAYPEVHPEAKSAQADLLNLKRK 172 (304)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEEECCCCC------CCCHHHHHHHHHHHC-CCEEEEEECTTCCTTCSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCCCCCCCHHHHHHHHHHcC-CCeEEEEeCCCcCCCCCCHHHHHHHHHHH
Confidence 35788999999999999999999999865443344555678888888763 455554 334311 121 233333
Q ss_pred HHcCcccc
Q 017200 229 AKSGLNVF 236 (375)
Q Consensus 229 ~~aGldv~ 236 (375)
.++|.|.+
T Consensus 173 vdAGAdf~ 180 (304)
T 3fst_A 173 VDAGANRA 180 (304)
T ss_dssp HHHTCCEE
T ss_pred HHcCCCEE
Confidence 36788753
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=84.22 E-value=1.8 Score=44.79 Aligned_cols=135 Identities=16% Similarity=0.168 Sum_probs=85.6
Q ss_pred chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc
Q 017200 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (375)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn 239 (375)
++-.+.++++.+.|++.|||-+-+. -..+..++++.||+.+|++.|-+ ++. .+.+..+.|.++|+|.+-.+
T Consensus 280 ~d~~eR~~aLv~AGvD~iviD~ahG------hs~~v~~~i~~ik~~~p~~~via--GNV-aT~e~a~~Li~aGAD~vkVG 350 (556)
T 4af0_A 280 PGDKDRLKLLAEAGLDVVVLDSSQG------NSVYQIEFIKWIKQTYPKIDVIA--GNV-VTREQAAQLIAAGADGLRIG 350 (556)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCSCC------CSHHHHHHHHHHHHHCTTSEEEE--EEE-CSHHHHHHHHHHTCSEEEEC
T ss_pred ccHHHHHHHHHhcCCcEEEEecccc------ccHHHHHHHHHHHhhCCcceEEe--ccc-cCHHHHHHHHHcCCCEEeec
Confidence 3567789999999999999865432 25778999999999999876633 222 16789999999999988655
Q ss_pred cc-chHHHHHHhcCC-CCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 240 IE-TVEELQSAVRDH-RANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 240 lE-tv~rl~~~mr~r-~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
+= .+--..+.+..- .....-.+++.+.+++. |+++-++- |+ -+.-|+...| ..|-|.|-+|-+|
T Consensus 351 iGpGSiCtTr~v~GvG~PQ~tAi~~~a~~a~~~---~vpvIADG--GI-~~sGDi~KAl----aaGAd~VMlGsll 416 (556)
T 4af0_A 351 MGSGSICITQEVMAVGRPQGTAVYAVAEFASRF---GIPCIADG--GI-GNIGHIAKAL----ALGASAVMMGGLL 416 (556)
T ss_dssp SSCSTTBCCTTTCCSCCCHHHHHHHHHHHHGGG---TCCEEEES--CC-CSHHHHHHHH----HTTCSEEEESTTT
T ss_pred CCCCcccccccccCCCCcHHHHHHHHHHHHHHc---CCCEEecC--Cc-CcchHHHHHh----hcCCCEEEEchhh
Confidence 42 111111112210 12234445666666664 45443332 22 4666666655 4677888787666
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=83.99 E-value=17 Score=37.00 Aligned_cols=133 Identities=17% Similarity=0.262 Sum_probs=83.7
Q ss_pred cchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccc
Q 017200 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (375)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~h 238 (375)
.++..+.++++.+.|++.|+|.+.+. +...+.++|+.|++.+|++.|-+ .+. .+.+..+.+.++|+|.+-.
T Consensus 254 ~~d~~era~aLveaGvd~I~Id~a~g------~~~~v~~~i~~i~~~~~~~~vi~--g~v-~t~e~a~~~~~aGad~i~v 324 (511)
T 3usb_A 254 TADAMTRIDALVKASVDAIVLDTAHG------HSQGVIDKVKEVRAKYPSLNIIA--GNV-ATAEATKALIEAGANVVKV 324 (511)
T ss_dssp STTHHHHHHHHHHTTCSEEEEECSCT------TSHHHHHHHHHHHHHCTTSEEEE--EEE-CSHHHHHHHHHHTCSEEEE
T ss_pred ccchHHHHHHHHhhccceEEeccccc------chhhhhhHHHHHHHhCCCceEEe--eee-ccHHHHHHHHHhCCCEEEE
Confidence 34567788899999999999987642 14568899999999998754432 111 1678899999999998754
Q ss_pred cccc-h---HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 239 NIET-V---EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 239 nlEt-v---~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
++.. . .+...-+. ..++....++.+.+++. +++ +|..- --+.+|+...+ .+|.+.|-+|..+
T Consensus 325 g~g~gsi~~~~~~~g~g--~p~~~~l~~v~~~~~~~---~iP----VIa~GGI~~~~di~kal----a~GA~~V~vGs~~ 391 (511)
T 3usb_A 325 GIGPGSICTTRVVAGVG--VPQLTAVYDCATEARKH---GIP----VIADGGIKYSGDMVKAL----AAGAHVVMLGSMF 391 (511)
T ss_dssp CSSCSTTCCHHHHHCCC--CCHHHHHHHHHHHHHTT---TCC----EEEESCCCSHHHHHHHH----HTTCSEEEESTTT
T ss_pred CCCCccccccccccCCC--CCcHHHHHHHHHHHHhC---CCc----EEEeCCCCCHHHHHHHH----HhCchhheecHHH
Confidence 3221 1 12211121 22333334444444442 333 33322 24888888776 4799999998765
|
| >2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A* | Back alignment and structure |
|---|
Probab=83.93 E-value=5.8 Score=37.76 Aligned_cols=139 Identities=16% Similarity=0.122 Sum_probs=83.8
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEee-eCCCCCc----ccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSV-DRDDLAD----QGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK 230 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsg-dr~dl~d----~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~ 230 (375)
..+++++++.|+++.+.|.+.|-|=|. .|+..+. .-...+..+|+.|++. ++.|.+=+ + +.+.++.-.+
T Consensus 42 ~~~~~~a~~~a~~~v~~GAdiIDIGgeSTrPga~~v~~~eE~~Rv~pvi~~l~~~--~vpiSIDT--~--~~~Va~aAl~ 115 (294)
T 2y5s_A 42 FLARDDALRRAERMIAEGADLLDIGGESTRPGAPPVPLDEELARVIPLVEALRPL--NVPLSIDT--Y--KPAVMRAALA 115 (294)
T ss_dssp --CTTHHHHHHHHHHHTTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHGGG--CSCEEEEC--C--CHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHhhC--CCeEEEEC--C--CHHHHHHHHH
Confidence 368899999999999999999998773 4554221 1245566667777653 34443322 2 5677777777
Q ss_pred cCcccccc-cccchHHHHHHhc----------CC----CC-----C--------HHHHHHHHHHHHHhCCCCce---EEE
Q 017200 231 SGLNVFAH-NIETVEELQSAVR----------DH----RA-----N--------FKQSLDVLMMAKDYVPAGTL---TKT 279 (375)
Q Consensus 231 aGldv~~h-nlEtv~rl~~~mr----------~r----~~-----s--------~~~~l~vl~~ak~~~p~Gl~---tkt 279 (375)
+|.+.++- +.+..+++++-+. .+ .. . .+...+.++.+.+ .|+. +--
T Consensus 116 aGa~iINdVsg~~d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~dv~~ev~~~l~~~i~~a~~---~Gi~~~~Iil 192 (294)
T 2y5s_A 116 AGADLINDIWGFRQPGAIDAVRDGNSGLCAMHMLGEPQTMQVGEPDYGDVVTDVRDFLAARAQALRD---AGVAAERICV 192 (294)
T ss_dssp HTCSEEEETTTTCSTTHHHHHSSSSCEEEEECCCEETTTTEECCCCCSSHHHHHHHHHHHHHHHHHH---TTCCGGGEEE
T ss_pred cCCCEEEECCCCCchHHHHHHHHhCCCEEEECCCCCCccccccCCccccHHHHHHHHHHHHHHHHHH---cCCChhhEEE
Confidence 78877643 1222234444321 10 00 1 2333445556665 4653 455
Q ss_pred eEEEecCCCH-HHHHHHHHHHHHcC
Q 017200 280 SIMLGCGETP-DQVVSTMEKVRAAG 303 (375)
Q Consensus 280 ~imvGlGET~-ee~~etl~~Lrelg 303 (375)
+--+|||.|. ++-+++|+.++++.
T Consensus 193 DPG~Gf~kt~~~~n~~ll~~l~~l~ 217 (294)
T 2y5s_A 193 DPGFGFGKAVVDDNYALLAALPDTA 217 (294)
T ss_dssp ECCTTSSSCTTHHHHHHHHTGGGGS
T ss_pred eCCCcccccchHHHHHHHHHHHHHH
Confidence 5556889999 88888888888765
|
| >1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ... | Back alignment and structure |
|---|
Probab=83.92 E-value=9.6 Score=36.29 Aligned_cols=138 Identities=14% Similarity=0.227 Sum_probs=81.9
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEee-eCCCCCc----ccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSV-DRDDLAD----QGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKS 231 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsg-dr~dl~d----~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~a 231 (375)
.+++++++.|++..+.|.+.|-|-+. .|+.... .-...+..+|+.|++.. ++.|.+=+ + +.+.++.-.++
T Consensus 60 ~~~~~a~~~a~~~v~~GAdiIDIGgeStrPga~~v~~~eE~~RvvpvI~~l~~~~-~vpiSIDT--~--~~~V~~aAl~a 134 (297)
T 1tx2_A 60 NEVDAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEV-KLPISIDT--Y--KAEVAKQAIEA 134 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHS-CSCEEEEC--S--CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CceEEEeC--C--CHHHHHHHHHc
Confidence 56799999999999999999998864 3443221 11345666668887653 34343322 2 67888888888
Q ss_pred Cccccccc-ccc-hHHHHHH----------hcCCC-CC--------HHHHHHHHHHHHHhCCCCce---EEEeEEEecCC
Q 017200 232 GLNVFAHN-IET-VEELQSA----------VRDHR-AN--------FKQSLDVLMMAKDYVPAGTL---TKTSIMLGCGE 287 (375)
Q Consensus 232 Gldv~~hn-lEt-v~rl~~~----------mr~r~-~s--------~~~~l~vl~~ak~~~p~Gl~---tkt~imvGlGE 287 (375)
|.+.++.- .+. .+++++- |..++ .. .+...+.++.+.+ .|+. +--+-.+|||-
T Consensus 135 Ga~iINdvsg~~~d~~m~~~aa~~g~~vVlmh~~G~p~y~d~v~ev~~~l~~~i~~a~~---~GI~~~~IilDPg~Gfgk 211 (297)
T 1tx2_A 135 GAHIINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKD---AGVRDENIILDPGIGFAK 211 (297)
T ss_dssp TCCEEEETTTTSSCTHHHHHHHHHTCCEEEECCCSCCCCSSHHHHHHHHHHHHHHHHHH---TTCCGGGEEEECCTTSSC
T ss_pred CCCEEEECCCCCCCHHHHHHHHHhCCcEEEEeCCCCCCcchHHHHHHHHHHHHHHHHHH---cCCChhcEEEeCCCCcCC
Confidence 98888642 222 2344432 11111 11 1333445555665 4654 55555568899
Q ss_pred CHHHHHHHHHHHHHc
Q 017200 288 TPDQVVSTMEKVRAA 302 (375)
Q Consensus 288 T~ee~~etl~~Lrel 302 (375)
|.++-+++|+.++++
T Consensus 212 ~~~~n~~ll~~l~~l 226 (297)
T 1tx2_A 212 TPEQNLEAMRNLEQL 226 (297)
T ss_dssp CHHHHHHHHHTGGGG
T ss_pred CHHHHHHHHHHHHHH
Confidence 999777777766654
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=83.89 E-value=1.5 Score=39.91 Aligned_cols=155 Identities=15% Similarity=0.184 Sum_probs=86.6
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC-CcEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NMLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p-~i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
.|...+.+.++.+.+.|++.++|=--|..-.+.. ..-.+.++.|++... .+.+.+.+-| ..+.++.+.++|+|.
T Consensus 14 ~D~~~l~~~i~~~~~~Gad~ihldi~DG~fvp~~--~~g~~~v~~lr~~~~~~~~vhlmv~d---p~~~i~~~~~aGadg 88 (230)
T 1tqj_A 14 ADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNI--TIGPLIVDAIRPLTKKTLDVHLMIVE---PEKYVEDFAKAGADI 88 (230)
T ss_dssp SCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCB--CBCHHHHHHHGGGCCSEEEEEEESSS---GGGTHHHHHHHTCSE
T ss_pred cCHhHHHHHHHHHHHcCCCEEEEEEEecCCCcch--hhhHHHHHHHHhhcCCcEEEEEEccC---HHHHHHHHHHcCCCE
Confidence 5778888899999999999876655554433321 111378888887652 2344455533 134578999999999
Q ss_pred cccccc--chHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 236 FAHNIE--TVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 236 ~~hnlE--tv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
+....| ..+ ...++++.+++ .|+ +.++.+.- .|..|.++.+. + ++|+|.++..
T Consensus 89 v~vh~e~~~~~--------------~~~~~~~~i~~---~g~--~~gv~~~p-~t~~e~~~~~~---~-~~D~v~~msv- 143 (230)
T 1tqj_A 89 ISVHVEHNASP--------------HLHRTLCQIRE---LGK--KAGAVLNP-STPLDFLEYVL---P-VCDLILIMSV- 143 (230)
T ss_dssp EEEECSTTTCT--------------THHHHHHHHHH---TTC--EEEEEECT-TCCGGGGTTTG---G-GCSEEEEESS-
T ss_pred EEECcccccch--------------hHHHHHHHHHH---cCC--cEEEEEeC-CCcHHHHHHHH---h-cCCEEEEEEe-
Confidence 876665 322 22355566666 453 34444422 45555543322 2 5788877544
Q ss_pred CCCCCCCCccccCCHHHHHHHHHHHHHhh
Q 017200 314 RPSKRHMPVSEYITPEAFERYRALGMEMG 342 (375)
Q Consensus 314 ~P~~~~~~v~~~v~pe~~~~l~~~a~~~g 342 (375)
.|+....+.. ....+.+++++++..+.|
T Consensus 144 ~pg~ggq~~~-~~~~~~i~~lr~~~~~~~ 171 (230)
T 1tqj_A 144 NPGFGGQSFI-PEVLPKIRALRQMCDERG 171 (230)
T ss_dssp CC----CCCC-GGGHHHHHHHHHHHHHHT
T ss_pred ccccCCccCc-HHHHHHHHHHHHHHHhcC
Confidence 3643232211 123456666666654443
|
| >3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis inhibition, bromopyruvate, amino-acid biosynthesis; HET: FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A 3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A | Back alignment and structure |
|---|
Probab=83.64 E-value=6.9 Score=41.29 Aligned_cols=142 Identities=11% Similarity=0.085 Sum_probs=88.9
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC---CCcEEEeecCCCCCC-hHHHHHHHHc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK---PNMLIEALVPDFRGN-NGCVREVAKS 231 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~---p~i~Ie~l~pd~~g~-~e~l~~L~~a 231 (375)
+++.+|-++.+++|.+.|+++|-... +... ... .+.++.|.+.. +++.|.+|.+...++ +..++.++.+
T Consensus 89 ~~s~eeKl~Ia~~L~~lGVd~IEaGf---P~as---p~D-~e~v~~i~~~~l~~~~~~i~aL~r~~~~did~a~eal~~a 161 (644)
T 3hq1_A 89 PMSPARKRRMFDLLVRMGYKEIEVGF---PSAS---QTD-FDFVREIIEQGAIPDDVTIQVLTQCRPELIERTFQACSGA 161 (644)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEEEC---TTTC---HHH-HHHHHHHHHTTCSCTTCEEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC---CCCC---hhH-HHHHHHHHhcCCCCCCeEEEEEecCCHhhHHHHHHHHhcC
Confidence 58999999999999999999998765 2111 111 34566666542 478888888753211 2345567788
Q ss_pred CcccccccccchH-HHHHHhcCCCCCHHHHHHHHH----HHHHhCCCCceEEEeEEEec-CC-----CHHHHHHHHHHHH
Q 017200 232 GLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLM----MAKDYVPAGTLTKTSIMLGC-GE-----TPDQVVSTMEKVR 300 (375)
Q Consensus 232 Gldv~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl~----~ak~~~p~Gl~tkt~imvGl-GE-----T~ee~~etl~~Lr 300 (375)
|.+.+...+-+++ .+...+ +.+.++.++.+. .+++.... . +.+++-+=| +| ..+-+++.++.+.
T Consensus 162 ~~~~Vhif~stSd~h~~~~l---~~s~eevle~~~~~v~~a~~~~~~-~-~~~~~~v~fs~Edasrtd~dfl~ev~~aa~ 236 (644)
T 3hq1_A 162 PRAIVHFYNSTSILQRRVVF---RANRAEVQAIATDGARKCVEQAAK-Y-PGTQWRFEYSPESYTGTELEYAKQVCDAVG 236 (644)
T ss_dssp SEEEEEEEEECCHHHHHHTT---CCCHHHHHHHHHHHHHHHHHHHHH-S-CSSEEEEEEEEETGGGSCHHHHHHHHHHHH
T ss_pred CCCEEEEEecCCHHHHHHHh---CCCHHHHHHHHHHHHHHHHHHhhh-c-cCceEEEEEcCcccCCCCHHHHHHHHHHHH
Confidence 9888888788887 333333 467888887654 33442111 1 123333334 44 4566668888888
Q ss_pred Hc---CCc---EEee
Q 017200 301 AA---GVD---VMTF 309 (375)
Q Consensus 301 el---gvd---~v~i 309 (375)
++ |++ .|.|
T Consensus 237 eaG~~Gad~~~~I~L 251 (644)
T 3hq1_A 237 EVIAPTPERPIIFNL 251 (644)
T ss_dssp HHHCCCSSSCEEEEE
T ss_pred HhcCCCCCceeEEEe
Confidence 86 466 4554
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=83.60 E-value=5 Score=37.18 Aligned_cols=80 Identities=18% Similarity=0.284 Sum_probs=51.5
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCccc---------------HHHHHHHHHHHHHhCCCcEEEeec---CCC
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQG---------------SGHFAQTVRKLKELKPNMLIEALV---PDF 218 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G---------------~~~~~~lir~Ik~~~p~i~Ie~l~---pd~ 218 (375)
.+.++..+.++++.+.|++.|.|-.--.+.+-|+- .....+++++|++.++++.|.++. |-+
T Consensus 28 p~~~~~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~ 107 (268)
T 1qop_A 28 PGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVF 107 (268)
T ss_dssp SCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHHH
Confidence 34578889999999999999988432222223321 133457899999874445554432 212
Q ss_pred -CCChHHHHHHHHcCcccc
Q 017200 219 -RGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 219 -~g~~e~l~~L~~aGldv~ 236 (375)
.+..+.++.+.++|+|.+
T Consensus 108 ~~g~~~~~~~~~~aGadgi 126 (268)
T 1qop_A 108 NNGIDAFYARCEQVGVDSV 126 (268)
T ss_dssp TTCHHHHHHHHHHHTCCEE
T ss_pred HhhHHHHHHHHHHcCCCEE
Confidence 123577889999999943
|
| >3e49_A Uncharacterized protein DUF849 with A TIM barrel; structural genomics, joint center for structural genomics; HET: MSE; 1.75A {Burkholderia xenovorans LB400} | Back alignment and structure |
|---|
Probab=83.17 E-value=3.7 Score=39.47 Aligned_cols=83 Identities=18% Similarity=0.182 Sum_probs=58.3
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeC-CCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCC--CCChHHHHHHHHcC
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDR-DDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF--RGNNGCVREVAKSG 232 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr-~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~--~g~~e~l~~L~~aG 232 (375)
|++++|+.+.|.+..+.|..-|+|=-=|. +.-+....+.|.+++..|++..| +.|...++.- ....+.++.+.+..
T Consensus 28 PvTpeEia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~~~e~~~~IR~~~d-~iI~~TTgg~~~~~~eerla~~~~~~ 106 (311)
T 3e49_A 28 PVTPDEVAQASIGAAEAGAAVIHLHARDPRDGRPTQDPAAFAEFLPRIKSNTD-AVINLTTGGSPHMTVEERLRPATHYM 106 (311)
T ss_dssp CCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHTTHHHHHHHHCC-CEEEECSCSCTTSCHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHhCC-cEEEECCCCCCCCCHHHHHHHHHhcC
Confidence 68999999999999999998777765442 22222236789999999999875 5666555421 11356677776667
Q ss_pred ccccccc
Q 017200 233 LNVFAHN 239 (375)
Q Consensus 233 ldv~~hn 239 (375)
+|....|
T Consensus 107 Pe~aSln 113 (311)
T 3e49_A 107 PELASLN 113 (311)
T ss_dssp CSEEEEE
T ss_pred CCeeeec
Confidence 7766555
|
| >4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A* | Back alignment and structure |
|---|
Probab=82.85 E-value=9.1 Score=36.56 Aligned_cols=152 Identities=12% Similarity=0.114 Sum_probs=86.9
Q ss_pred CcCCCCCCCCCCCCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCc---ccHHHHHHHHHHHHHhCCCcEEEeecC-CC
Q 017200 143 CRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD---QGSGHFAQTVRKLKELKPNMLIEALVP-DF 218 (375)
Q Consensus 143 C~FC~v~~~r~~~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d---~G~~~~~~lir~Ik~~~p~i~Ie~l~p-d~ 218 (375)
|+-+.||.+. .+.+.-+.+++.+.+.|.+||-++- +...+.+ +..+.+.+-|+++++...+..+.+++- .+
T Consensus 87 ~tVigFP~G~----~~~e~K~~Ea~~Av~~GAdEIDmVi-nig~lk~~~~g~~~~V~~eI~~v~~a~~~~~lKVIlEt~~ 161 (297)
T 4eiv_A 87 CAAVNFPEGT----GTPDTVSLEAVGALKDGADEIECLI-DWRRMNENVADGESRIRLLVSEVKKVVGPKTLKVVLSGGE 161 (297)
T ss_dssp EEEESTTTCC----CCHHHHHHHHHHHHHTTCSEEEEEC-CTHHHHHCHHHHHHHHHHHHHHHHHHHTTSEEEEECCSSC
T ss_pred EEEecCCCCC----CCHHHHHHHHHHHHHcCCCEEEeee-eHHHHhcccCCcHHHHHHHHHHHHHHhcCCceEEEEeccc
Confidence 5556666543 3456777788888899999997762 2222333 446677778888887765566665432 23
Q ss_pred CCChHHH----HHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhC------------------CCCce
Q 017200 219 RGNNGCV----REVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYV------------------PAGTL 276 (375)
Q Consensus 219 ~g~~e~l----~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~------------------p~Gl~ 276 (375)
..+.+.+ +...++|+|.+.=. -- +. +.+++.++..-..+.+++.. +..+.
T Consensus 162 Lt~~e~i~~A~~ia~~AGADFVKTS----TG---f~-~~gAT~edV~lM~~~v~~~~~~~~~~~~~~~~~~~~~tg~~vg 233 (297)
T 4eiv_A 162 LQGGDIISRAAVAALEGGADFLQTS----SG---LG-ATHATMFTVHLISIALREYMVRENERIRVEGINREGAAVRCIG 233 (297)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEECC----CS---SS-SCCCCHHHHHHHHHHHHHHHCC------------------CCE
T ss_pred CCcHHHHHHHHHHHHHhCCCEEEcC----CC---CC-CCCCCHHHHHHHHHHHHHHhccccccccccccccccccCCcee
Confidence 3244422 45568899976321 10 00 13444444433333333210 11244
Q ss_pred EEEeEEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 017200 277 TKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 277 tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i 309 (375)
+|+. +|=--|.++.++.+..++++|.++++-
T Consensus 234 vKAs--~GGIrt~e~A~~~i~~~~elG~~wl~~ 264 (297)
T 4eiv_A 234 IKIE--VGDVHMAETADFLMQMIFENGPRSIVR 264 (297)
T ss_dssp EEEE--CTTCCHHHHHHHHHHHHHHHCGGGCST
T ss_pred EEec--CCCCCCHHHHHHHHHHHHHhCccccCC
Confidence 5544 122378999999999999888776543
|
| >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=82.34 E-value=14 Score=35.14 Aligned_cols=120 Identities=15% Similarity=0.232 Sum_probs=76.9
Q ss_pred HHHhCCCcEEEeecCCCC--C--C----hHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Q 017200 202 LKELKPNMLIEALVPDFR--G--N----NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPA 273 (375)
Q Consensus 202 Ik~~~p~i~Ie~l~pd~~--g--~----~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~ 273 (375)
++..+.++..-.++|--. + | ...++.+.+.|+|.+-.+=-|-+- ..-+.+++.++++.+.+....
T Consensus 8 ~~~~~~Gv~~a~vTPf~~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~-------~~Ls~eEr~~v~~~~v~~~~g 80 (316)
T 3e96_A 8 LAKALETISGIPITPFRKSDGSIDWHHYKETVDRIVDNGIDVIVPCGNTSEF-------YALSLEEAKEEVRRTVEYVHG 80 (316)
T ss_dssp HHHHTSSEEECCCCCBCTTTCCBCHHHHHHHHHHHHTTTCCEECTTSGGGTG-------GGSCHHHHHHHHHHHHHHHTT
T ss_pred hhhcCCceEEeeeCCccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCccccCc-------ccCCHHHHHHHHHHHHHHhCC
Confidence 444555666666666322 2 3 345667778888865332222221 135689999999999886533
Q ss_pred CceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee-cCCCCCCCCCCccccCC-HHHHHHHHHHHHHhh
Q 017200 274 GTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG-QYMRPSKRHMPVSEYIT-PEAFERYRALGMEMG 342 (375)
Q Consensus 274 Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~-qYl~P~~~~~~v~~~v~-pe~~~~l~~~a~~~g 342 (375)
+.-+|+|.|.+-+|.++..+...++|+|.+-+. +|+.+ .+ .+-+++++.+|...+
T Consensus 81 ----rvpViaGvg~~t~~ai~la~~A~~~Gadavlv~~P~y~~----------~s~~~l~~~f~~va~a~~ 137 (316)
T 3e96_A 81 ----RALVVAGIGYATSTAIELGNAAKAAGADAVMIHMPIHPY----------VTAGGVYAYFRDIIEALD 137 (316)
T ss_dssp ----SSEEEEEECSSHHHHHHHHHHHHHHTCSEEEECCCCCSC----------CCHHHHHHHHHHHHHHHT
T ss_pred ----CCcEEEEeCcCHHHHHHHHHHHHhcCCCEEEEcCCCCCC----------CCHHHHHHHHHHHHHhCC
Confidence 345788887799999999999999999987664 33211 12 234566677776644
|
| >3e02_A Uncharacterized protein DUF849; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia xenovorans LB400} | Back alignment and structure |
|---|
Probab=80.32 E-value=11 Score=36.06 Aligned_cols=83 Identities=17% Similarity=0.154 Sum_probs=57.1
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeC-CCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCC--CCChHHHHHHHHcC
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDR-DDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF--RGNNGCVREVAKSG 232 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr-~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~--~g~~e~l~~L~~aG 232 (375)
|++++|+.+.|.+..+.|..-|+|=.=|. +.-+....+.|.+++..|++..| +.|...++.- ....+.++.+.+..
T Consensus 28 PvTpeEia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~~~e~~~~IR~~~d-~iI~~TTgg~~~~~~eerla~~~~~~ 106 (311)
T 3e02_A 28 PITPEEIVKEGVAAAEAGAAMLHLHARDPLNGRPSQDPDLFMRFLPQLKERTD-AILNITTGGGLGMSLDERLAPARAAR 106 (311)
T ss_dssp CCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHTTTHHHHHHHCC-CEEEECSSCSTTCCHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHhCC-cEEEECCCCCCCCCHHHHHHHHHhcC
Confidence 68999999999999999998777765442 22222236789999999999875 5666555421 11355677776656
Q ss_pred ccccccc
Q 017200 233 LNVFAHN 239 (375)
Q Consensus 233 ldv~~hn 239 (375)
+|....|
T Consensus 107 Pe~aSln 113 (311)
T 3e02_A 107 PEVASMN 113 (311)
T ss_dssp CSEEEEE
T ss_pred CCeeeec
Confidence 7654433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 375 | ||||
| d1r30a_ | 312 | c.1.28.1 (A:) Biotin synthase {Escherichia coli [T | 2e-11 |
| >d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Biotin synthase domain: Biotin synthase species: Escherichia coli [TaxId: 562]
Score = 61.9 bits (149), Expect = 2e-11
Identities = 36/259 (13%), Positives = 79/259 (30%), Gaps = 18/259 (6%)
Query: 78 KPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGD 137
+P+W + +L E L + EA+ + + + I
Sbjct: 1 RPRWTLSQV----------TELFEKPLLDLLFEAQ--QVHRQHFDPRQVQVSTLLSIKTG 48
Query: 138 TCTRGCRFCNV-KTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFA 196
C C++C + + A +
Sbjct: 49 ACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMP 108
Query: 197 QTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRAN 256
+ ++ +K L + + R +GL+ + HN++T E +
Sbjct: 109 YLEQMVQGVKAMGLEACMTLGTLSESQAQRLA-NAGLDYYNHNLDTSPEFYGNII-TTRT 166
Query: 257 FKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPS 316
+++ LD L +D AG + ++G GET + ++ + M
Sbjct: 167 YQERLDTLEKVRD---AGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVK 223
Query: 317 KRHMPVSEYITPEAFERYR 335
+ P+++ +AF+ R
Sbjct: 224 VKGTPLADNDDVDAFDFIR 242
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 375 | |||
| d1r30a_ | 312 | Biotin synthase {Escherichia coli [TaxId: 562]} | 99.94 | |
| d1olta_ | 441 | Oxygen-independent coproporphyrinogen III oxidase | 99.57 | |
| d1tv8a_ | 327 | Molybdenum cofactor biosynthesis protein A MoaA {S | 99.34 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 95.48 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 95.38 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 95.03 | |
| d1nvma2 | 289 | 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d | 91.65 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 89.92 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 85.21 | |
| d7reqb2 | 163 | Methylmalonyl-CoA mutase beta subunit, C-terminal | 83.69 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 82.63 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 81.13 |
| >d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Biotin synthase domain: Biotin synthase species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=1.1e-25 Score=214.54 Aligned_cols=235 Identities=14% Similarity=0.238 Sum_probs=173.6
Q ss_pred HHHHHhccChhhhhhhcCCCCcccccCCCCCCccEEEEe-eeCCccCCCCcCCCCCCCC-CC----CCCCcchHHHHHHH
Q 017200 95 IKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIM-ILGDTCTRGCRFCNVKTSR-AP----PPPDPDEPTNVAEA 168 (375)
Q Consensus 95 ~~~~l~~~~L~tvceeA~cpn~~ec~~~~~~~~~tatfm-~i~d~C~~~C~FC~v~~~r-~~----~~ld~eEi~~~a~a 168 (375)
+..++ +..|..++..|...... .|++. -....+.+ +.||+|+.+|.||+++... .. ..++++++++.++.
T Consensus 9 ~~~L~-~~~~~dL~~~A~~v~r~-~~~~~--~~~~~~~~~~~TngC~~~C~fC~~~~~~~~~~~~~~~~~~e~i~~~~~~ 84 (312)
T d1r30a_ 9 VTELF-EKPLLDLLFEAQQVHRQ-HFDPR--QVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARK 84 (312)
T ss_dssp THHHH-HSCHHHHHHHHHHHHHH-HSCTT--CCEEEEEEEEECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHHHH
T ss_pred HHHHH-cCCHHHHHHHHHHHHHH-HcCCC--EEEEeeeeEeeCCCCCCcCCcCCCCccCCCCCccccccchHHHHHHHHH
Confidence 44455 35666676676654432 35432 12223333 4599999999999987632 11 13789999999999
Q ss_pred HHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccchHHHHH
Q 017200 169 IASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQS 248 (375)
Q Consensus 169 l~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~ 248 (375)
+.+.|+++++++++..+... ...+++.++++.++...+.+.+. .... +.+.++.|+++|++.+.+++|+.++++.
T Consensus 85 ~~~~G~~~~~~~~g~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~--~~~l--~~e~l~~lk~aG~~~i~~~iEs~~~~~~ 159 (312)
T d1r30a_ 85 AKAAGSTRFCMGAAWKNPHE-RDMPYLEQMVQGVKAMGLEACMT--LGTL--SESQAQRLANAGLDYYNHNLDTSPEFYG 159 (312)
T ss_dssp HHHTTCSEEEEEECCSSCCT-TTHHHHHHHHHHHHHTTSEEEEE--CSSC--CHHHHHHHHHHCCCEEECCCBSCHHHHH
T ss_pred HHHcCCEEEEEccCCCCCch-hhHHHHHHHHHhcccccceeeec--cccc--hHHHHHHhhcccceeEecccchhhhhhc
Confidence 99999999999999755332 23778999999988765444433 2223 7899999999999999999999998888
Q ss_pred HhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCc--EEeeecCCCCCCCCCCccccC
Q 017200 249 AVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVD--VMTFGQYMRPSKRHMPVSEYI 326 (375)
Q Consensus 249 ~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd--~v~i~qYl~P~~~~~~v~~~v 326 (375)
.++ ++.++++++++++.+++. |+.++++||+|+|||.+|+++++..|++++.+ .++++.+ .|. +++++....
T Consensus 160 ~~~-~~~~~~~~~~~~~~a~~~---Gi~~~~~~i~G~~et~~d~~~~l~~l~~l~~~~~~i~~~~~-~p~-~gT~l~~~~ 233 (312)
T d1r30a_ 160 NII-TTRTYQERLDTLEKVRDA---GIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINML-VKV-KGTPLADND 233 (312)
T ss_dssp HHC-CSSCHHHHHHHHHHHHHH---HCEEECCEEECSSCCHHHHHHHHHHHHSSSSCCSEEEEEEC-CCC-TTSTTSSCC
T ss_pred cCC-CCCCHHHHHHHHHHHHHh---ccceecceEecCcCcHHHHHHHHHHHHhcCCCCCeeeeccc-cCC-CCccccccc
Confidence 888 689999999999999994 89999999999999999999999999998764 6666444 452 355555544
Q ss_pred CHHHHHHHHHHHHHhhhh
Q 017200 327 TPEAFERYRALGMEMGFR 344 (375)
Q Consensus 327 ~pe~~~~l~~~a~~~gf~ 344 (375)
.+...+.++.+|..+=|.
T Consensus 234 ~~~~~e~l~~iA~~Rl~l 251 (312)
T d1r30a_ 234 DVDAFDFIRTIAVARIMM 251 (312)
T ss_dssp CCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhC
Confidence 445566666666654443
|
| >d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Oxygen-independent coproporphyrinogen III oxidase HemN domain: Oxygen-independent coproporphyrinogen III oxidase HemN species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=1.9e-14 Score=143.89 Aligned_cols=177 Identities=18% Similarity=0.253 Sum_probs=134.2
Q ss_pred EEEEeeeCCccCCCCcCCCCCCC--CCCCCCC--cchHHHHHHHHH----hcCCcEEEEEeeeCCCCCcccHHHHHHHHH
Q 017200 129 TATIMILGDTCTRGCRFCNVKTS--RAPPPPD--PDEPTNVAEAIA----SWGLDYVVITSVDRDDLADQGSGHFAQTVR 200 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~--r~~~~ld--~eEi~~~a~al~----~~G~~eIvLTsgdr~dl~d~G~~~~~~lir 200 (375)
..-|+-+ --|...|.||.+.+. +.....+ .+-++++++..+ ...+..|.+-||+-.-++ .+.+..+++
T Consensus 50 lsLYiHi-PFC~~~C~yC~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~v~~i~~GGGTPt~L~---~~~l~~ll~ 125 (441)
T d1olta_ 50 LSLYVHI-PFCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLN---KAQISRLMK 125 (441)
T ss_dssp EEEEEEE-CEESSCCTTCCSSCEECSCTHHHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEESCGGGSC---HHHHHHHHH
T ss_pred eEEEEEe-CCCCCCCCCCcCeeecCCCcchHHHHHHHHHHHHHHhhHhcCCCccceeEecCCCcCCCC---HHHHHHHHH
Confidence 4445433 469999999998753 2111111 133333333322 334678888888765555 467888888
Q ss_pred HHHHhCCC-----cEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC
Q 017200 201 KLKELKPN-----MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAG 274 (375)
Q Consensus 201 ~Ik~~~p~-----i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~G 274 (375)
.|++.++- +.+| ..|... +.+.++.|+++|++.+..++++. +++++.|+ |.++.++..++++.+++ .|
T Consensus 126 ~l~~~~~~~~~~e~t~E-~~P~~~-~~~~l~~l~~~G~nRiSlGvQs~~~~vl~~i~-R~~~~~~~~~~~~~~r~---~g 199 (441)
T d1olta_ 126 LLRENFQFNADAEISIE-VDPREI-ELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVN-REQDEEFIFALLNHARE---IG 199 (441)
T ss_dssp HHHHHSCEEEEEEEEEE-ECSSSC-CTHHHHHHHHTTCCEEEEEEECCCHHHHHHHT-CCCCHHHHHHHHHHHHH---TT
T ss_pred HHhhhccccchhccccc-cccccc-chHHHHHHHHhCCceEEecchhcchhhhhhhh-cCCCHHHHHHHHHHHHh---cc
Confidence 88887642 3334 345433 78899999999999999999975 59999999 89999999999999999 46
Q ss_pred ce-EEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CC
Q 017200 275 TL-TKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RP 315 (375)
Q Consensus 275 l~-tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P 315 (375)
+. ++.++|+|+ |||.+++.++|+.+.++++|.|++.+|. .|
T Consensus 200 ~~~vn~DLI~GlPgqT~~~~~~tl~~~~~l~pd~is~y~~~~~p 243 (441)
T d1olta_ 200 FTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLP 243 (441)
T ss_dssp CCSCEEEEEESCTTCCHHHHHHHHHHHHHHCCSEEEEEECCCCT
T ss_pred cceeecccccccCCcchHHHHHHHHHHHhhCCCccccccceecc
Confidence 64 899999999 9999999999999999999999999995 45
|
| >d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: MoCo biosynthesis proteins domain: Molybdenum cofactor biosynthesis protein A MoaA species: Staphylococcus aureus [TaxId: 1280]
Probab=99.34 E-value=4.1e-11 Score=111.99 Aligned_cols=192 Identities=16% Similarity=0.234 Sum_probs=138.4
Q ss_pred eeeCCccCCCCcCCCCCCCCC--------CCCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHH
Q 017200 133 MILGDTCTRGCRFCNVKTSRA--------PPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKE 204 (375)
Q Consensus 133 m~i~d~C~~~C~FC~v~~~r~--------~~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~ 204 (375)
+-+|+.|+.+|+||....... ...|+.|++.+.++.+.++|+..+.+|||...-.+| +.+++....+
T Consensus 16 ieiT~~CNlrC~~C~~~~~~~~~~~~~~~~~~ls~e~~~~li~~~~~~g~~~v~~~GGEp~l~~~-----~~e~i~~~~~ 90 (327)
T d1tv8a_ 16 LSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRD-----LDVLIAKLNQ 90 (327)
T ss_dssp EECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHTTCCEEEEESSCGGGSTT-----HHHHHHHHTT
T ss_pred EEeccccCCcCcCCCCccccCCCCccCCccccCCHHHHHHHHHHHHHcCCeEEEeCCCccccccc-----HHHHHHHHhh
Confidence 668999999999997543210 112899999999999999999999999997432233 5566665544
Q ss_pred hCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccchH-HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEE
Q 017200 205 LKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIML 283 (375)
Q Consensus 205 ~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imv 283 (375)
... +...+++-...-+++.++.|+++|++.+...++..+ +.+..+++++..++..++.++.+++ .|+.+...+++
T Consensus 91 ~~~-~~~~~~Tng~ll~~~~~~~l~~~g~~~i~iSldg~~~e~~~~~rg~~g~~~~~~~~~~~~~~---~g~~~~~~~~v 166 (327)
T d1tv8a_ 91 IDG-IEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATS---IGLNVKVNVVI 166 (327)
T ss_dssp CTT-CCEEEEEECSTTHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHH---TTCEEEEEEEE
T ss_pred hcc-ccccccccccccchhHHHHHHHcCCCEEeeecccCCHHHhhhheeeccccchhhhHHHHHHH---cCCCcceeEEE
Confidence 432 222233322222688999999999999999999874 8899988777889999999999999 57888888877
Q ss_pred ecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCC-CCCCccccCCHHHHHHH
Q 017200 284 GCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSK-RHMPVSEYITPEAFERY 334 (375)
Q Consensus 284 GlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~-~~~~v~~~v~pe~~~~l 334 (375)
--|...+++.+.++.+.+.+++...+ +++.+.. .......++++++....
T Consensus 167 ~~~~n~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (327)
T d1tv8a_ 167 QKGINDDQIIPMLEYFKDKHIEIRFI-EFMDVGNDNGWDFSKVVTKDEMLTM 217 (327)
T ss_dssp CTTTTGGGHHHHHHHHHHTTCCEEEE-ECCCBCSSSSBCCSSCCCHHHHHHH
T ss_pred ecCccccccHHHHHHHHhhcccccee-eeecccCcccccccccccHHHHHHH
Confidence 66889999999999999999886544 4443322 22333344555554433
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=95.48 E-value=0.18 Score=44.12 Aligned_cols=112 Identities=19% Similarity=0.256 Sum_probs=86.4
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.++++.+..++++.+.|++.+=||--+ + .-.+.|+.+++.+|++.|.+-+= . +.+.++...++|.+.+
T Consensus 26 ~~~~~a~~~~~al~~~Gi~~iEitl~~----p-----~a~~~i~~l~~~~p~~~vGaGTV-~--~~~~~~~a~~aGa~Fi 93 (216)
T d1mxsa_ 26 AREEDILPLADALAAGGIRTLEVTLRS----Q-----HGLKAIQVLREQRPELCVGAGTV-L--DRSMFAAVEAAGAQFV 93 (216)
T ss_dssp SCGGGHHHHHHHHHHTTCCEEEEESSS----T-----HHHHHHHHHHHHCTTSEEEEECC-C--SHHHHHHHHHHTCSSE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCC----h-----hHHHHHHHHHHhCCCcceeeeee-e--cHHHHHHHHhCCCCEE
Confidence 468999999999999999998888421 1 24678999999999988875331 1 7899999999998864
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
|. +..+ .++++.+++ .|+..-.++ .|..|+...+ ++|.+.+.+|
T Consensus 94 -------------vs-P~~~----~~v~~~a~~---~~i~~iPGv-----~TpsEi~~A~----~~G~~~vKlF 137 (216)
T d1mxsa_ 94 -------------VT-PGIT----EDILEAGVD---SEIPLLPGI-----STPSEIMMGY----ALGYRRFKLF 137 (216)
T ss_dssp -------------EC-SSCC----HHHHHHHHH---CSSCEECEE-----CSHHHHHHHH----TTTCCEEEET
T ss_pred -------------EC-CCCc----HHHHHHHHh---cCCCccCCc-----CCHHHHHHHH----HCCCCEEEec
Confidence 33 2333 477888888 578777777 4999988765 7899999887
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=95.38 E-value=0.23 Score=43.29 Aligned_cols=112 Identities=16% Similarity=0.176 Sum_probs=87.0
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.++++.+..++++.+.|++-|=||--. +. -.+.|+.+++.+|++.|.+-+= . +.+.++...++|.+.+
T Consensus 24 ~~~~~a~~~~~al~~~Gi~~iEitl~t----p~-----a~~~I~~l~~~~p~~~vGaGTV--~-~~~~~~~a~~aGa~Fi 91 (213)
T d1wbha1 24 KKLEHAVPMAKALVAGGVRVLNVTLRT----EC-----AVDAIRAIAKEVPEAIVGAGTV--L-NPQQLAEVTEAGAQFA 91 (213)
T ss_dssp SSGGGHHHHHHHHHHTTCCEEEEESCS----TT-----HHHHHHHHHHHCTTSEEEEESC--C-SHHHHHHHHHHTCSCE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCC----hh-----HHHHHHHHHHHCCCCeeecccc--c-cHHHHHHHHHCCCcEE
Confidence 478999999999999999999988521 11 3688999999999988765331 1 7899999999998865
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
|. +..+ .++++.+++ .|+..-.++ .|..|+...+ ++|.+.+.+|
T Consensus 92 -------------vS-P~~~----~~v~~~a~~---~~i~~iPGv-----~TpsEi~~A~----~~G~~~vKlF 135 (213)
T d1wbha1 92 -------------IS-PGLT----EPLLKAATE---GTIPLIPGI-----STVSELMLGM----DYGLKEFKFF 135 (213)
T ss_dssp -------------EE-SSCC----HHHHHHHHH---SSSCEEEEE-----SSHHHHHHHH----HTTCCEEEET
T ss_pred -------------EC-CCCC----HHHHHHHHh---cCCCccCCc-----CCHHHHHHHH----HCCCCEEEec
Confidence 33 2333 377888888 568877887 5999988755 7899999997
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=95.03 E-value=0.24 Score=43.10 Aligned_cols=112 Identities=21% Similarity=0.273 Sum_probs=86.0
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.+.++..+.++++.+.|++.|=||--+ + .-.+.|+.+++.+|++.|.+-+= . +.+.++...++|.+.+
T Consensus 23 ~~~~~~~~~~~al~~~Gi~~iEitl~~----~-----~a~~~I~~l~~~~p~~~vGaGTV-~--~~~~~~~a~~aGa~Fi 90 (212)
T d1vhca_ 23 DNADDILPLADTLAKNGLSVAEITFRS----E-----AAADAIRLLRANRPDFLIAAGTV-L--TAEQVVLAKSSGADFV 90 (212)
T ss_dssp SSGGGHHHHHHHHHHTTCCEEEEETTS----T-----THHHHHHHHHHHCTTCEEEEESC-C--SHHHHHHHHHHTCSEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCC----h-----hHHHHHHHHHhcCCCceEeeeec-c--cHHHHHHHHhhCCcEE
Confidence 468999999999999999999998421 1 13678899999999988775331 1 7899999999998865
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
|. +..+ -++++.+++ .++..-.++| |..|+.+.+ ++|.+.+.+|
T Consensus 91 -------------vS-P~~~----~~v~~~a~~---~~i~~iPGv~-----TpsEi~~A~----~~G~~~vK~F 134 (212)
T d1vhca_ 91 -------------VT-PGLN----PKIVKLCQD---LNFPITPGVN-----NPMAIEIAL----EMGISAVKFF 134 (212)
T ss_dssp -------------EC-SSCC----HHHHHHHHH---TTCCEECEEC-----SHHHHHHHH----HTTCCEEEET
T ss_pred -------------EC-CCCC----HHHHHHHHh---cCCCccCCcC-----CHHHHHHHH----HCCCCEEEEc
Confidence 33 2333 377888888 4677777774 999988765 7899999997
|
| >d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain species: Pseudomonas sp. [TaxId: 306]
Probab=91.65 E-value=0.47 Score=41.84 Aligned_cols=140 Identities=12% Similarity=0.086 Sum_probs=83.8
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCC--CCcc--cHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD--LADQ--GSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKS 231 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~d--l~d~--G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~a 231 (375)
.++.++.++.++.+.+.|+++|-+.++.... ..+. ....-.+.++.+....+...+..+...-....+.+....++
T Consensus 25 ~~s~e~k~~i~~~L~~~Gv~~IEvG~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 104 (289)
T d1nvma2 25 QYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEISHAQIATLLLPGIGSVHDLKNAYQA 104 (289)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCSSSEEEEEECBTTBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccchhhhccchHHHHHHHHHHhcchhHHHHHHhhhhhhHHHHHHHHHh
Confidence 4889999999999999999999986542111 0110 01123455666666555666665543323356677788888
Q ss_pred CcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 232 GLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 232 Gldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
+.+.+..... ....+...+.++.+++. |+.+..+++.-..-+.+.+.+..+.+.+.|++.|.+.
T Consensus 105 ~~~~~r~~~~------------~~~~~~~~~~~~~a~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~I~l~ 168 (289)
T d1nvma2 105 GARVVRVATH------------CTEADVSKQHIEYARNL---GMDTVGFLMMSHMIPAEKLAEQGKLMESYGATCIYMA 168 (289)
T ss_dssp TCCEEEEEEE------------TTCGGGGHHHHHHHHHH---TCEEEEEEESTTSSCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred cccceEEEee------------hhhhhhHhHHHHHHHHh---CCceeeEeeeccccCchhhhHHHHhhccccceeeeec
Confidence 8776543211 11122233455666663 5555555544445555667777777777787777663
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=89.92 E-value=1.9 Score=36.72 Aligned_cols=112 Identities=20% Similarity=0.257 Sum_probs=80.9
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHh-CCCcEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL-KPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~-~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
-+.++....++++.+.|++-+=||--. ++ -.+.|+.|++. .|++.|.+-+= . +.+.++...++|.+.
T Consensus 18 ~~~~~a~~~~~al~~~Gi~~iEitlr~----p~-----a~~~i~~l~~~~~~~~~vGaGTV-~--~~~~~~~a~~aGa~f 85 (202)
T d1wa3a1 18 NSVEEAKEKALAVFEGGVHLIEITFTV----PD-----ADTVIKELSFLKEKGAIIGAGTV-T--SVEQCRKAVESGAEF 85 (202)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEETTS----TT-----HHHHHHHTHHHHHTTCEEEEESC-C--SHHHHHHHHHHTCSE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC----cc-----HHHHHHHHHHhcCCCcEEEeccc-c--cHHHHHHHHhhcccE
Confidence 367899999999999999999888311 22 35677777653 48887765221 1 689999999999886
Q ss_pred ccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 236 FAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 236 ~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
+ |. +..+ .++++.+++ .|+..-.++ -|..|+...+ +.|.+.+.++
T Consensus 86 i-------------vs-P~~~----~~v~~~~~~---~~i~~iPGv-----~TpsEi~~A~----~~G~~~lK~f 130 (202)
T d1wa3a1 86 I-------------VS-PHLD----EEISQFCKE---KGVFYMPGV-----MTPTELVKAM----KLGHTILKLF 130 (202)
T ss_dssp E-------------EC-SSCC----HHHHHHHHH---HTCEEECEE-----CSHHHHHHHH----HTTCCEEEET
T ss_pred E-------------eC-CCCc----HHHHHHHHh---cCCceeCCc-----CcHHHHHHHH----HCCCCEEEec
Confidence 5 33 3443 377777777 357777777 4999988775 6899988876
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=85.21 E-value=2.3 Score=37.27 Aligned_cols=78 Identities=13% Similarity=0.171 Sum_probs=57.5
Q ss_pred hHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHH
Q 017200 222 NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVR 300 (375)
Q Consensus 222 ~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~ee~~etl~~Lr 300 (375)
.+.++.+.+.|++.+-.+--+.+- ..-+.+++.++++.+.+... -+.-+|+|. +.+-+|.++..+..+
T Consensus 27 ~~~i~~l~~~Gv~gl~~~G~tGE~-------~~Ls~~Er~~l~~~~~~~~~----~~~~vi~gv~~~s~~~~i~~a~~a~ 95 (292)
T d1xkya1 27 TKLVNYLIDNGTTAIVVGGTTGES-------PTLTSEEKVALYRHVVSVVD----KRVPVIAGTGSNNTHASIDLTKKAT 95 (292)
T ss_dssp HHHHHHHHHTTCCEEEESSTTTTG-------GGSCHHHHHHHHHHHHHHHT----TSSCEEEECCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEECeEccch-------hhCCHHHHHHHHHHHHHHhC----CCceEEEecCcccHHHHHHHHHHHH
Confidence 556777788888866443223221 13568889999998888532 266789999 788999999999999
Q ss_pred HcCCcEEeee
Q 017200 301 AAGVDVMTFG 310 (375)
Q Consensus 301 elgvd~v~i~ 310 (375)
++|.|.+-+.
T Consensus 96 ~~Gad~ilv~ 105 (292)
T d1xkya1 96 EVGVDAVMLV 105 (292)
T ss_dssp HTTCSEEEEE
T ss_pred HcCCCEEEEC
Confidence 9999987774
|
| >d7reqb2 c.23.6.1 (B:476-638) Methylmalonyl-CoA mutase beta subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methylmalonyl-CoA mutase beta subunit, C-terminal domain species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=83.69 E-value=0.59 Score=38.66 Aligned_cols=80 Identities=15% Similarity=0.120 Sum_probs=52.6
Q ss_pred HHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc---
Q 017200 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN--- 239 (375)
Q Consensus 163 ~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn--- 239 (375)
.+.++++.+.|.+-++|.|-+... .....++++.||+..+++.+ +.+... ..+..+.++++|+|.|-|.
T Consensus 76 ~e~v~aa~~~~a~vvvicssd~~y-----~~~~~~~~~aLk~ag~~~~v--laGg~~-~~~d~~~l~~aGVd~~i~~G~d 147 (163)
T d7reqb2 76 AEIVEAFKKSGAQVADLCSSAKVY-----AQQGLEVAKALKAAGAKALY--LSGAFK-EFGDDAAEAEKLIDGRLFMGMD 147 (163)
T ss_dssp HHHHHHHHHHTCSEEEEECCHHHH-----HHHHHHHHHHHHHTTCSEEE--EESCGG-GGGGGHHHHHHHCCEEECTTCC
T ss_pred HHHHHHHHhCCCCEEEEecCccch-----HHHHHHHHHHHHhcccceeE--EEecCC-CcccHHHHHhCCCCeEecCCCc
Confidence 345677888999999999875421 45677889999987655443 332211 3445678999999987553
Q ss_pred -ccchHHHHHHh
Q 017200 240 -IETVEELQSAV 250 (375)
Q Consensus 240 -lEtv~rl~~~m 250 (375)
+|+..+++++|
T Consensus 148 ~~~~l~~l~~~l 159 (163)
T d7reqb2 148 VVDTLSSTLDIL 159 (163)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 45555555554
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=82.63 E-value=1.2 Score=41.70 Aligned_cols=136 Identities=16% Similarity=0.167 Sum_probs=83.6
Q ss_pred cchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccc
Q 017200 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (375)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~h 238 (375)
+++-.+.+.++.+.|++.++|-+-+. -..++.++++.|++.+|++.|- .+... +.+....|.++|+|.+-.
T Consensus 149 ~~~~~~ra~~L~~aG~D~ivID~AhG------~s~~~~~~i~~ik~~~~~v~vI--aGNV~-T~e~a~~L~~~GaD~VkV 219 (388)
T d1eepa_ 149 DIDTIERVEELVKAHVDILVIDSAHG------HSTRIIELIKKIKTKYPNLDLI--AGNIV-TKEAALDLISVGADCLKV 219 (388)
T ss_dssp CTTHHHHHHHHHHTTCSEEEECCSCC------SSHHHHHHHHHHHHHCTTCEEE--EEEEC-SHHHHHHHHTTTCSEEEE
T ss_pred CHHHHHHHHHHHhhccceeeeecccc------chHHHHHHHHHHHHHCCCCcee--ecccc-CHHHHHHHHhcCCCeeee
Confidence 34567788999999999999876443 2578899999999999987652 22221 688899999999998755
Q ss_pred ccc-chHHHHHHhcCC-CCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 239 NIE-TVEELQSAVRDH-RANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 239 nlE-tv~rl~~~mr~r-~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
++= .+--..+.+.+- ...+.-.+++.+.++. .++++-++- =--+.-|+...| ..|-|.|-+|-+|
T Consensus 220 GiGpGs~CtTr~~~GvG~pq~sai~~~~~~~~~---~~vpiIADG---Gi~~~Gdi~KAl----a~GAd~VMlG~~l 286 (388)
T d1eepa_ 220 GIGPGSICTTRIVAGVGVPQITAICDVYEACNN---TNICIIADG---GIRFSGDVVKAI----AAGADSVMIGNLF 286 (388)
T ss_dssp CSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTT---SSCEEEEES---CCCSHHHHHHHH----HHTCSEEEECHHH
T ss_pred ccccccccccccccccCcchHHHHHHHHHHhcc---CCceEEecc---ccCcCCceeeeE----Eeccceeecchhh
Confidence 431 111111112211 1123333344444433 234433322 125778888777 5688888777665
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=81.13 E-value=6.4 Score=35.67 Aligned_cols=149 Identities=9% Similarity=-0.003 Sum_probs=86.1
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecC-----CCC----CChHHHHH
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVP-----DFR----GNNGCVRE 227 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~p-----d~~----g~~e~l~~ 227 (375)
...-+|++.|+...++|++++++.-.+...-...+-..+.++|+.|.+.. .+.|.+--+ |.. ...|..+.
T Consensus 45 r~iGdP~~~a~~~~~~gaDeL~ivDidas~~~~~~~~~~~~~I~~i~~~~-~vPi~vGGGIrsi~di~~~~~~~~e~A~~ 123 (323)
T d1jvna1 45 RNLGKPVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTV-FVPLTVGGGIKDIVDVDGTKIPALEVASL 123 (323)
T ss_dssp --CHHHHHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTC-CSCEEEESSCSCEECTTCCEECHHHHHHH
T ss_pred cccCCHHHHHHHHHHCCCCEEEEEECcCCCCCcCCCchHHHHHHhhcccc-ceeEEEecCcccHHHhhhccchhhHHHHH
Confidence 35569999999999999999999755431100011234678888876543 233332111 110 01467889
Q ss_pred HHHcCcccccccccch--HHHHHHhcCCCCCHHHHHHHHHHHHHhCC-CCceEEEeEEEecC------------------
Q 017200 228 VAKSGLNVFAHNIETV--EELQSAVRDHRANFKQSLDVLMMAKDYVP-AGTLTKTSIMLGCG------------------ 286 (375)
Q Consensus 228 L~~aGldv~~hnlEtv--~rl~~~mr~r~~s~~~~l~vl~~ak~~~p-~Gl~tkt~imvGlG------------------ 286 (375)
|.++|+|.+..|=..+ ++.+..+..+.-+. ..++.+.+.++ .-+.+.-++.-+.+
T Consensus 124 ll~~GadKVvI~T~ai~~p~~~~e~~~~~~n~----~li~~i~~~fGsq~IvvsiD~k~~~~~~~~~~~~~~~~~~~~~~ 199 (323)
T d1jvna1 124 YFRSGADKVSIGTDAVYAAEKYYELGNRGDGT----SPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYPGP 199 (323)
T ss_dssp HHHHTCSEEEECHHHHHHHHHHHHTTSCCCSC----SHHHHHHHHHCGGGEEEEECEEEEEESSGGGCSSCCEECSSCCT
T ss_pred HHHcCCCeEEechHHhhChHHHHHHHhhcccc----hhHHHHHHHhCCceEEEEEEEEeccccccccccccccccccccC
Confidence 9999999998873332 35555554222222 23444444332 12455555544431
Q ss_pred -----------------CCHHHHHHHHHHHHHcCCcEEeee
Q 017200 287 -----------------ETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 287 -----------------ET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
.|.-++.+.++.+.++|+-.+-+.
T Consensus 200 ~~~~~~~y~v~~~gg~~~t~~~l~~~i~~~~~~G~GEIllt 240 (323)
T d1jvna1 200 NGEKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLN 240 (323)
T ss_dssp TCCCEEEEEEEETTTTEEEEEEHHHHHHHHHHTTCCEEEEC
T ss_pred CCccceeEEEEEcCCeEecCchHHHHhhhhhccCcceeEEE
Confidence 233378899999999999888774
|