Citrus Sinensis ID: 017209

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-----
MDNSDASVDLAEVPSKGSVEQRESAVINPNSAAVSEASAGASGCCKVKGQVQEECQNIESSTEERSEAQGIIKKDVSVSESDDTLKNRKPENTETRRKSSKRTFKSEKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGELKIKQHEEKLVQEQSQMKLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAERKQNSVGSNNSDSAPE
ccccccccccccccccccHHHHHHHccccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
ccccccccccccccccccccccccccccccHccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
mdnsdasvdlaevpskgsveqresavinpnsaavseasagasgcckvKGQVQEECQNIESSTEERSEAQgiikkdvsvsesddtlknrkpentetrrksSKRTFKSEKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGELKIKQHEEKLVQEQSQMKLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAERkqnsvgsnnsdsape
mdnsdasvdlaevpskgsveqresAVINPNSAAVSEASAGASGCCKVKGQVQEECQNIEssteerseaqgiikkdvsvsesddtlknrkpentetrrksskrtfksekEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGELKIKQHEEKLVQEQSQMKLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENaflkskceksdfTLIELVEERERMKKQleksknqkeKLESLCRSlqaerkqnsvgsnnsdsape
MDNSDASVDLAEVPSKGSVEQRESAVINPNsaavseasagasgCCKVKGQVQEECQNIESSTEERSEAQGIIKKDVSVSESDDTLKNRKPENTETRRKSSKRTFKSEKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGELKIKQHEEKLVQEQSQMKLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAERKQNSVGSNNSDSAPE
*************************************************************************************************************FLEFTLKYQQVLAERDAAMAVRDKLESLC**********************************AIK*V************************LKQLADQYALTEQQYAQKLKQKTLELQIGELK****************LYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFK***************************DFTLIEL***********************************************
*****************************************************************************************************************************************************************************IK********************************************************************************************************************************************************************************************************
*********************************************KVKGQVQ******************IIKKDVSV*************************FKSEKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGELKIKQHEEKLVQEQSQMKLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERER***************ESLCRSLQA*****************
***************************************************************ERSEAQGIIKKDVSVSESDDTLKNRKPENTETRRKSSKRTFKSEKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGELKIKQHEEKLVQEQSQMKLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAE****************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDNSDASVDLAEVPSKGSVEQRESAVINPNSAAVSEASAGASGCCKVKGQVQEECQNIESSTEERSEAQGIIKKDVSVSESDDTLKNRKPENTETRRKSSKRTFKSEKEFLEFTLKYQQVLAExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVxxxxxxxxxxxxxxxxxxxxxxxxxxxxCEKSDFTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNSVGSNNSDSAPE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query375 2.2.26 [Sep-21-2011]
P40222546 Alpha-taxilin OS=Homo sap yes no 0.677 0.465 0.375 2e-30
Q6PAM1554 Alpha-taxilin OS=Mus musc yes no 0.637 0.431 0.384 7e-30
Q9NUQ3528 Gamma-taxilin OS=Homo sap no no 0.626 0.445 0.370 4e-27
Q8BHN1524 Gamma-taxilin OS=Mus musc no no 0.629 0.450 0.359 5e-27
Q8VBT1 685 Beta-taxilin OS=Mus muscu no no 0.642 0.351 0.344 3e-25
Q8N3L3 684 Beta-taxilin OS=Homo sapi no no 0.637 0.349 0.343 4e-24
Q9I969 676 Beta-taxilin OS=Gallus ga no no 0.637 0.353 0.355 6e-24
Q9BZA4181 Putative gamma-taxilin-li no no 0.274 0.569 0.388 2e-10
>sp|P40222|TXLNA_HUMAN Alpha-taxilin OS=Homo sapiens GN=TXLNA PE=1 SV=3 Back     alignment and function desciption
 Score =  133 bits (334), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/274 (37%), Positives = 157/274 (57%), Gaps = 20/274 (7%)

Query: 122 AERDAAMAVRDKLESLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKL 181
            E   A+  R KLESLCRELQR N+ L +E  + + E +  R ++++ FQ  + D+ +++
Sbjct: 229 GEHSKAVLARSKLESLCRELQRHNRSLKEEGVQRAREEEEKRKEVTSHFQVTLNDIQLQM 288

Query: 182 EEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGELKIKQHEEKL 241
           E+  +      +EN  L   LK+L +QY L E+   +  K K L+ Q+ + K++Q +E L
Sbjct: 289 EQHNERNSKLRQENMELAERLKKLIEQYELREEHIDKVFKHKDLQQQLVDAKLQQAQEML 348

Query: 242 --VQEQSQMK---LYAEQV-SQLLA-----TEKNLRLQLTADGEKFQQFQDALVKSNEVF 290
              +E+ Q +   L  E V SQ +       E +L+ QL    EKF++FQ+ L KS+EVF
Sbjct: 349 KEAEERHQREKDFLLKEAVESQRMCELMKQQETHLKQQLALYTEKFEEFQNTLSKSSEVF 408

Query: 291 ETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLE 350
            TFKQE+EKM K IK+L+KE    +S+ E S+  L+E+ EE+    K+LE  + + ++LE
Sbjct: 409 TTFKQEMEKMTKKIKKLEKETTMYRSRWESSNKALLEMAEEKTVRDKELEGLQVKIQRLE 468

Query: 351 SLCRSLQAER-------KQNSVGSNNS--DSAPE 375
            LCR+LQ ER       +  S G   S  DS PE
Sbjct: 469 KLCRALQTERNDLNKRVQDLSAGGQGSLTDSGPE 502
May be involved in intracellular vesicle traffic and potentially in calcium-dependent exocytosis in neuroendocrine cells.
Homo sapiens (taxid: 9606)
>sp|Q6PAM1|TXLNA_MOUSE Alpha-taxilin OS=Mus musculus GN=Txlna PE=2 SV=1 Back     alignment and function description
>sp|Q9NUQ3|TXLNG_HUMAN Gamma-taxilin OS=Homo sapiens GN=TXLNG PE=1 SV=2 Back     alignment and function description
>sp|Q8BHN1|TXLNG_MOUSE Gamma-taxilin OS=Mus musculus GN=Txlng PE=1 SV=1 Back     alignment and function description
>sp|Q8VBT1|TXLNB_MOUSE Beta-taxilin OS=Mus musculus GN=Txlnb PE=2 SV=2 Back     alignment and function description
>sp|Q8N3L3|TXLNB_HUMAN Beta-taxilin OS=Homo sapiens GN=TXLNB PE=1 SV=3 Back     alignment and function description
>sp|Q9I969|TXLNB_CHICK Beta-taxilin OS=Gallus gallus GN=TXLNB PE=2 SV=1 Back     alignment and function description
>sp|Q9BZA4|CY15B_HUMAN Putative gamma-taxilin-like protein CYorf15B OS=Homo sapiens GN=CYorf15B PE=5 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query375
224112989461 predicted protein [Populus trichocarpa] 0.989 0.804 0.728 1e-141
255577691454 taxilin, putative [Ricinus communis] gi| 0.976 0.806 0.729 1e-140
225449112418 PREDICTED: alpha-taxilin [Vitis vinifera 0.877 0.787 0.793 1e-140
356574595436 PREDICTED: alpha-taxilin-like [Glycine m 0.949 0.816 0.739 1e-138
449452112457 PREDICTED: alpha-taxilin-like [Cucumis s 0.96 0.787 0.708 1e-134
357443361426 Beta-taxilin [Medicago truncatula] gi|35 0.901 0.793 0.753 1e-132
388508408426 unknown [Medicago truncatula] 0.901 0.793 0.750 1e-131
297792389412 hypothetical protein ARALYDRAFT_495147 [ 0.981 0.893 0.633 1e-118
22327703404 uncharacterized protein [Arabidopsis tha 0.794 0.737 0.765 1e-118
42573650405 uncharacterized protein [Arabidopsis tha 0.794 0.735 0.762 1e-117
>gi|224112989|ref|XP_002316353.1| predicted protein [Populus trichocarpa] gi|222865393|gb|EEF02524.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 273/375 (72%), Positives = 312/375 (83%), Gaps = 4/375 (1%)

Query: 1   MDNSDASVDLAEVPSKGSVEQRESAVINPN-SAAVSEASAGASGCCKVKGQVQEECQNIE 59
           +D  DASV L   P +G+  Q E  +  P     V EAS G S C +V  +VQ   Q+ +
Sbjct: 89  IDGCDASVHLVVEPDQGAW-QEEGTLTKPVLDDLVPEASVGVSRCSEVI-EVQGSSQSSD 146

Query: 60  SSTEERSEAQGIIKKDVSVSESDDTLKNRKPENTETRRKSSKRTFKSEKEFLEFTLKYQQ 119
            ST+   ++Q    K++S SES +  K RK E TET+RK++KRTFKSEKEFLEFTLKYQQ
Sbjct: 147 RSTQGGLDSQATGVKEISSSESTELQKGRK-EATETKRKNAKRTFKSEKEFLEFTLKYQQ 205

Query: 120 VLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSI 179
           VL ERDAA+ VRDKLESLCRELQRQNKMLMDECKRVS+EGQ+LRLDLS KFQDAIKDVS 
Sbjct: 206 VLTERDAAIVVRDKLESLCRELQRQNKMLMDECKRVSTEGQHLRLDLSTKFQDAIKDVSN 265

Query: 180 KLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGELKIKQHEE 239
           +LEEQK++ L+QLKENEMLR  LK+ ADQYA++EQQ AQKLKQKTLELQI +LKIKQHEE
Sbjct: 266 RLEEQKEESLTQLKENEMLRKKLKEFADQYAISEQQNAQKLKQKTLELQIADLKIKQHEE 325

Query: 240 KLVQEQSQMKLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEK 299
           KLVQEQSQMK+YAEQVSQLLATEK LRLQLTADG+KFQQFQ+ALVKSNEVFETFKQEI+K
Sbjct: 326 KLVQEQSQMKIYAEQVSQLLATEKTLRLQLTADGDKFQQFQEALVKSNEVFETFKQEIDK 385

Query: 300 MAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAE 359
           MAKSIKELKKEN FLKSK EKSD  LIELV+ERE++KKQL+K++NQKEKLESLCRSLQAE
Sbjct: 386 MAKSIKELKKENTFLKSKSEKSDVMLIELVDEREKLKKQLDKTRNQKEKLESLCRSLQAE 445

Query: 360 RKQNSVGSNNSDSAP 374
           RKQN  GSN+SDS P
Sbjct: 446 RKQNKTGSNSSDSVP 460

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255577691|ref|XP_002529722.1| taxilin, putative [Ricinus communis] gi|223530824|gb|EEF32688.1| taxilin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225449112|ref|XP_002276892.1| PREDICTED: alpha-taxilin [Vitis vinifera] gi|296086051|emb|CBI31492.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356574595|ref|XP_003555431.1| PREDICTED: alpha-taxilin-like [Glycine max] Back     alignment and taxonomy information
>gi|449452112|ref|XP_004143804.1| PREDICTED: alpha-taxilin-like [Cucumis sativus] gi|449485922|ref|XP_004157311.1| PREDICTED: alpha-taxilin-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357443361|ref|XP_003591958.1| Beta-taxilin [Medicago truncatula] gi|355481006|gb|AES62209.1| Beta-taxilin [Medicago truncatula] Back     alignment and taxonomy information
>gi|388508408|gb|AFK42270.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|297792389|ref|XP_002864079.1| hypothetical protein ARALYDRAFT_495147 [Arabidopsis lyrata subsp. lyrata] gi|297309914|gb|EFH40338.1| hypothetical protein ARALYDRAFT_495147 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|22327703|ref|NP_199897.2| uncharacterized protein [Arabidopsis thaliana] gi|19698943|gb|AAL91207.1| unknown protein [Arabidopsis thaliana] gi|31711880|gb|AAP68296.1| At5g50840 [Arabidopsis thaliana] gi|332008616|gb|AED95999.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|42573650|ref|NP_974921.1| uncharacterized protein [Arabidopsis thaliana] gi|332008617|gb|AED96000.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query375
TAIR|locus:2157946405 AT5G50840 [Arabidopsis thalian 0.864 0.8 0.708 5e-115
UNIPROTKB|Q9I969 676 TXLNB "Beta-taxilin" [Gallus g 0.962 0.534 0.302 4.3e-40
UNIPROTKB|E1BGS4561 LOC100852159 "Uncharacterized 0.76 0.508 0.360 2.3e-39
UNIPROTKB|F1P0Q4 677 TXLNB "Beta-taxilin" [Gallus g 0.776 0.429 0.344 2.6e-39
UNIPROTKB|P40222546 TXLNA "Alpha-taxilin" [Homo sa 0.76 0.521 0.360 2.9e-39
UNIPROTKB|F1NLI4366 TXLNA "Uncharacterized protein 0.712 0.729 0.363 4.8e-39
UNIPROTKB|E2QYI1550 TXLNA "Uncharacterized protein 0.72 0.490 0.362 4.8e-39
UNIPROTKB|J9PA47561 TXLNA "Uncharacterized protein 0.72 0.481 0.362 4.8e-39
MGI|MGI:105968554 Txlna "taxilin alpha" [Mus mus 0.72 0.487 0.362 6.1e-39
UNIPROTKB|F1S6Z6 676 TXLNB "Uncharacterized protein 0.781 0.433 0.321 5.6e-37
TAIR|locus:2157946 AT5G50840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1134 (404.2 bits), Expect = 5.0e-115, P = 5.0e-115
 Identities = 233/329 (70%), Positives = 282/329 (85%)

Query:    47 VKGQVQEECQNIESSTE-ERSEAQGIIKKDVSVSESDDTLKNRKPENT-ETRRKSSKRTF 104
             +K +++ E +  E+S    ++ ++G  +   ++S+  D+LK +K +   E++RK SK  F
Sbjct:    77 IKLELEFEQKEKEASPPISQTLSEGSTQNS-TLSKEMDSLKPKKQQEVVESKRKGSKNMF 135

Query:   105 KSEKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRVSSEGQNLRL 164
             KSEKEFLEF LKYQQVL+ERD+A+ VRDKLESLCRELQRQNKMLM+ECKRVS+EGQ LR 
Sbjct:   136 KSEKEFLEFMLKYQQVLSERDSAITVRDKLESLCRELQRQNKMLMEECKRVSTEGQTLRS 195

Query:   165 DLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKT 224
             DLS KFQDAI DVSIKL+EQK++ L+QLKENEMLRT LK LADQ+ L+EQQ+ Q+LKQKT
Sbjct:   196 DLSTKFQDAIMDVSIKLDEQKNESLTQLKENEMLRTKLKHLADQFMLSEQQHEQRLKQKT 255

Query:   225 LELQIGELKIKQHEEKLVQEQSQMKLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALV 284
             LELQI  LKIKQHEEKL+ EQSQMK+YA+QVSQLL+TEKNLRLQLT+DG+KFQQFQDALV
Sbjct:   256 LELQISALKIKQHEEKLIHEQSQMKVYADQVSQLLSTEKNLRLQLTSDGDKFQQFQDALV 315

Query:   285 KSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKN 344
             KSNEVFETFKQEI+KM+K+IKEL+KENAFLK+K EKSD TLIELVEERER+KK LEK+K 
Sbjct:   316 KSNEVFETFKQEIDKMSKAIKELRKENAFLKNKTEKSDITLIELVEERERLKKLLEKTKK 375

Query:   345 QKEKLESLCRSLQAERKQNSVGSNNSDSA 373
             QK+KLESLCRSLQAERKQ    +N++DSA
Sbjct:   376 QKDKLESLCRSLQAERKQKE--TNSTDSA 402
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
UNIPROTKB|Q9I969 TXLNB "Beta-taxilin" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BGS4 LOC100852159 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1P0Q4 TXLNB "Beta-taxilin" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P40222 TXLNA "Alpha-taxilin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NLI4 TXLNA "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2QYI1 TXLNA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9PA47 TXLNA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:105968 Txlna "taxilin alpha" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1S6Z6 TXLNB "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00102134
hypothetical protein (461 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query375
pfam09728309 pfam09728, Taxilin, Myosin-like coiled-coil protei 8e-67
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-06
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 8e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 8e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 7e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 9e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 9e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-04
COG4942 420 COG4942, COG4942, Membrane-bound metallopeptidase 0.001
pfam09728 309 pfam09728, Taxilin, Myosin-like coiled-coil protei 0.003
pfam04156186 pfam04156, IncA, IncA protein 0.004
>gnl|CDD|220366 pfam09728, Taxilin, Myosin-like coiled-coil protein Back     alignment and domain information 
 Score =  213 bits (544), Expect = 8e-67
 Identities = 126/285 (44%), Positives = 176/285 (61%), Gaps = 7/285 (2%)

Query: 83  DTLKNRKPENTETRRKSSKRTFKSEKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQ 142
           +TL  R  E  +  ++  K   K +K   +   +  ++ +E   A+  R KLESLCRELQ
Sbjct: 25  ETLIKRLAELLKEMKRLEKDLKKLQKRGEQLQKEKDKLQSEHSKAILARSKLESLCRELQ 84

Query: 143 RQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNL 202
           + NK L +E K  S E +  R +L+ KFQ  +KD+  ++EE  +      +ENE LR  L
Sbjct: 85  KHNKTLKEENKARSDEEEEKRKELTEKFQSTLKDIQDQMEEHSNPNHKLCEENEELREKL 144

Query: 203 KQLADQYALTEQQYAQKLKQKTLELQIGELKIKQHEEKLVQEQSQMKLYAE-------QV 255
           K+L +QY L EQ + + LK K LE Q+ + K++Q +E+  QEQ + K   E       QV
Sbjct: 145 KELIEQYELREQHFEKLLKTKDLEQQLNDAKLEQAQEQAEQEQEKHKREKEILLKEAAQV 204

Query: 256 SQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLK 315
           S L  TEK LR QL    +KF++FQD L KSNEVF TFKQE+EKM+K IK+L+KEN   K
Sbjct: 205 STLKETEKELRAQLNLYSDKFKEFQDTLNKSNEVFLTFKQEMEKMSKKIKKLEKENLAWK 264

Query: 316 SKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAER 360
            K EKS+  L+E+ EER++  K++EK K + +KLE LCR+LQAER
Sbjct: 265 RKWEKSNKALLEMAEERQKRDKEIEKLKKKIDKLEKLCRALQAER 309

Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca2+-dependent exocytosis in neuroendocrine cells. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription. Length = 309
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|220366 pfam09728, Taxilin, Myosin-like coiled-coil protein Back     alignment and domain information
>gnl|CDD|217933 pfam04156, IncA, IncA protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 375
PF09728309 Taxilin: Myosin-like coiled-coil protein; InterPro 100.0
KOG1850391 consensus Myosin-like coiled-coil protein [Cytoske 100.0
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 97.6
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 97.47
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 97.32
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 97.03
PF07888 546 CALCOCO1: Calcium binding and coiled-coil domain ( 96.98
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 96.79
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 96.48
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 96.35
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 96.34
PF05483 786 SCP-1: Synaptonemal complex protein 1 (SCP-1); Int 96.21
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 96.21
PF13851201 GAS: Growth-arrest specific micro-tubule binding 95.76
PF09728309 Taxilin: Myosin-like coiled-coil protein; InterPro 95.51
KOG2008 426 consensus BTK-associated SH3-domain binding protei 95.39
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 95.32
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 94.84
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 94.3
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 94.01
PF07888 546 CALCOCO1: Calcium binding and coiled-coil domain ( 93.94
KOG0933 1174 consensus Structural maintenance of chromosome pro 93.76
PF13870177 DUF4201: Domain of unknown function (DUF4201) 93.73
PF00038312 Filament: Intermediate filament protein; InterPro: 93.63
PRK04778569 septation ring formation regulator EzrA; Provision 93.29
PF09755310 DUF2046: Uncharacterized conserved protein H4 (DUF 93.04
PRK11637 428 AmiB activator; Provisional 92.94
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 92.62
PRK03918 880 chromosome segregation protein; Provisional 92.27
KOG0996 1293 consensus Structural maintenance of chromosome pro 91.83
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 91.12
KOG0996 1293 consensus Structural maintenance of chromosome pro 90.92
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 90.71
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 90.55
PF15070 617 GOLGA2L5: Putative golgin subfamily A member 2-lik 90.44
KOG2129 552 consensus Uncharacterized conserved protein H4 [Fu 89.86
PF00038312 Filament: Intermediate filament protein; InterPro: 89.78
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 89.69
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 88.54
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 88.38
PLN03229762 acetyl-coenzyme A carboxylase carboxyl transferase 88.33
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 87.89
PRK03918 880 chromosome segregation protein; Provisional 87.68
PRK11637 428 AmiB activator; Provisional 87.61
PRK02224 880 chromosome segregation protein; Provisional 87.28
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 86.91
PF05557 722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 86.66
TIGR03752 472 conj_TIGR03752 integrating conjugative element pro 86.28
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 86.23
PRK02224 880 chromosome segregation protein; Provisional 85.66
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 85.39
PF12777344 MT: Microtubule-binding stalk of dynein motor; Int 84.81
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 84.38
PF13851201 GAS: Growth-arrest specific micro-tubule binding 82.98
KOG0964 1200 consensus Structural maintenance of chromosome pro 82.92
PHA02562 562 46 endonuclease subunit; Provisional 82.81
PRK04863 1486 mukB cell division protein MukB; Provisional 82.22
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 82.17
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 80.39
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed Back     alignment and domain information 
Probab=100.00  E-value=5.2e-73  Score=553.29  Aligned_cols=279  Identities=47%  Similarity=0.633  Sum_probs=271.1

Q ss_pred             ccccccCCCcchHHhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhhHHHHH
Q 017209           82 DDTLKNRKPENTETRRKSSKRTFKSEKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRVSSEGQN  161 (375)
Q Consensus        82 ~~~~~~~~~~~~e~~r~~~k~~~klek~~~~~~~~~~qv~~Er~kai~~K~KLE~LCRELQkqNK~lKEE~~~~~~eee~  161 (375)
                      ++....+-.+....+|+..+++..++|.+..+.+.+++++.|++++|++|+|||+||||||++|+.|++|+++++++++.
T Consensus        24 ~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~  103 (309)
T PF09728_consen   24 LEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEE  103 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555688888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHhHHHHHHHH
Q 017209          162 LRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGELKIKQHEEKL  241 (375)
Q Consensus       162 kRkelsekFq~tL~dIq~~meE~~~~~~k~~eEN~~LreKLK~LieQYElRE~h~~k~lK~KeLE~QL~~AKleq~~e~~  241 (375)
                      +|.+|++||+++|+||+++|+++++++.+++++|..|++|||+|++||++||.||++++++++||+||++|||+++...+
T Consensus       104 kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~  183 (309)
T PF09728_consen  104 KRKELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQEEA  183 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209          242 VQEQSQMKLYAE-------QVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFL  314 (375)
Q Consensus       242 ~~Ek~q~k~l~e-------qv~~l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~  314 (375)
                      .++..++..+.+       +|..|.++|.+|+.||++|++||++||+||+|||++|+|||+||++|+|+|++||||+..|
T Consensus       184 ~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~  263 (309)
T PF09728_consen  184 EQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTW  263 (309)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999988888       9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017209          315 KSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAER  360 (375)
Q Consensus       315 K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE~LCRaLQ~ER  360 (375)
                      ++|||+||++||+|++||+.+.++++.+++|+++|++|||+||+||
T Consensus       264 k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ~er  309 (309)
T PF09728_consen  264 KSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQAER  309 (309)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            9999999999999999999999999999999999999999999997

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed Back     alignment and domain information
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13870 DUF4201: Domain of unknown function (DUF4201) Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query375
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-14
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-13
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-11
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-10
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 3e-09
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 3e-08
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 3e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-07
1m1j_C 409 Fibrinogen gamma chain; coiled coils, disulfide ri 7e-05
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 7e-04
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
 Score = 73.7 bits (181), Expect = 3e-14
 Identities = 61/324 (18%), Positives = 134/324 (41%), Gaps = 11/324 (3%)

Query: 46   KVKGQVQEECQNIESSTEERSEAQGIIKKDVSVSESDDTLKNRKPENTETRRKSSKRTFK 105
            +++ + +E  +  E   +  +E + + +K   + E  + L+ +    TE   ++ +   +
Sbjct: 858  EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVR 917

Query: 106  SEKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRVSSEGQNLRLD 165
               +  E      ++ A  +       +L++  +++Q+Q   L ++ +   +  Q L+L+
Sbjct: 918  LAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLE 977

Query: 166  LSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKT- 224
                    IK +   +   +D      KE ++L   +  L    A  E++     K K  
Sbjct: 978  KVTA-DGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNK 1036

Query: 225  LELQIGELKIK-QHEEKLVQE--------QSQMKLYAEQVSQLLATEKNLRLQLTADGEK 275
             E  I EL+++ + EEK  QE        + +     EQ+++L A    L+ QL    E+
Sbjct: 1037 HESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEE 1096

Query: 276  FQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERM 335
             Q     L           ++I ++   I +L+++    K+   K++    +L EE E +
Sbjct: 1097 LQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEAL 1156

Query: 336  KKQLEKSKNQKEKLESLCRSLQAE 359
            K +LE + +     + L  S   +
Sbjct: 1157 KTELEDTLDTTATQQELRGSDYKD 1180
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C Length = 409 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query375
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 97.06
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 96.76
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 95.87
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 95.45
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 95.44
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 95.23
2v66_B111 Nuclear distribution protein NUDE-like 1; structur 93.55
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 93.37
3u59_A101 Tropomyosin beta chain; muscle contraction, actin, 92.35
3tnu_B129 Keratin, type II cytoskeletal 5; coiled-coil, stru 92.31
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 90.92
3tnu_A131 Keratin, type I cytoskeletal 14; coiled-coil, stru 90.64
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 89.22
3trt_A77 Vimentin; cytoskeleton, intermediate filament, alp 87.41
3ghg_A 562 Fibrinogen alpha chain; triple-stranded coiled coi 85.16
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 84.19
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 84.13
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 84.11
2v4h_A110 NF-kappa-B essential modulator; transcription, met 83.14
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 82.23
1ic2_A81 Tropomyosin alpha chain, skeletal muscle; alpha-he 82.16
1ic2_A81 Tropomyosin alpha chain, skeletal muscle; alpha-he 80.9
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
Probab=97.06  E-value=0.14  Score=44.74  Aligned_cols=23  Identities=9%  Similarity=-0.088  Sum_probs=10.8

Q ss_pred             hhHhhhhHHHHHHHHHHHHHHHH
Q 017209          101 KRTFKSEKEFLEFTLKYQQVLAE  123 (375)
Q Consensus       101 k~~~klek~~~~~~~~~~qv~~E  123 (375)
                      |.|..|+.++-.+......+..+
T Consensus         6 ~~~~~l~~~~~~~~~~~~~l~~~   28 (284)
T 1c1g_A            6 KKMQMLKLDKENALDRADEAEAD   28 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHH
Confidence            34444555555555444444433
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens} Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Back     alignment and structure
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A* Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1 Back     alignment and structure
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00