Citrus Sinensis ID: 017214

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-----

MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDSTVNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWVCSEDGPIF

ccccccccccEEEEEccccccccccccHHHHHHHHHHcccccccccccEEEEccccccHHHHHHHHHHHccccccccEEEEEEEEEccccccccccEEEEcccccccccccccccccccccccccccccEEEEccEEEEccccccccEEEEEEEcccccccccccHHHHHHHHHHHccccccccEEEccccEEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccEEEEEcccccccccEEEEEccccccccHHHHHHHHHHHHHHHHHccEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccc

ccEEEcccccEEEEEcccccccccccHHHHHHHHHHHHcccccccccccEEEccccccHHHHHHHHHHcccccccccEEEEEEEEEEcccccccccccccccccccHHHcccEccccccccccccccccEEEEEEEEccccccccccEEEEEEccccccccccccHHHHHHHHHHcHHHHcccccccEEEEEEEccccccccccccccccccccccEEEccccccEEHHHHHHHHHHHHHHccEEEcccccEEccccEEEEcccccccccHHHHHHHHHHHHHHHHHcccEEEEcccccccccccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccc

maqilapsmqwqmrmpkysniaspmTTKMWSSLLMKQnkkgtnrssAKFRVLALKSEDSTVNRLEDllnlditpytdKIIAEYIWIGgtgidmrsksktiskpvehpselpkwnydgsstgqapgedsevilypqaifkdpfrggnniLVICdtytpagepiptnkrhrAAEIfsnskvsaevpwfgIEQEYTLLQQnvkwplgwpvgaypgpqgpyycgagadksfgrdIADAHYKACLYAGinisgtngevmpgqweyqvgpsvgidagdhiWCSRYLLERITEQAGvvlsldpkpiegdwngagchtnystksmreeggYETIKKAILNLSLRHKEHISaygegnerrltgkhetasidsfswvcsedgpif

maqilapsmqwqMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLalksedstvnrledllnlditpytDKIIAEYIWIGGTGIDMRSKSKTISKpvehpselpkwnydGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDpkpiegdwngagCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAygegnerrltgkhetasidsfswvcsedgpif

**************************************************VLAL****STVNRLEDLLNLDITPYTDKIIAEYIWIGGTGID*************************************VILYPQAIFKDPFRGGNNILVICDTYTPAGEPI******RAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTK****EGGYETIKKAILNLSLRHKEHISAY****************IDSFSWVC*******

*****A*SMQWQMR****************************************************LLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWVCSEDGP**

*AQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKK******AKFRVLALKSEDSTVNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSST****GEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWVCSEDGP*F

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		375	2.2.26 [Sep-21-2011]
O22506		432	Glutamine synthetase, chl	N/A	no	0.992	0.861	0.860	0.0
P15102		429	Glutamine synthetase leaf	N/A	no	0.984	0.860	0.876	0.0
P08281		430	Glutamine synthetase leaf	N/A	no	0.986	0.860	0.849	0.0
Q9XQ94		428	Glutamine synthetase leaf	N/A	no	0.981	0.859	0.844	0.0
Q43127		430	Glutamine synthetase, chl	yes	no	0.986	0.860	0.827	0.0
Q42624		428	Glutamine synthetase, chl	N/A	no	0.981	0.859	0.806	0.0
P14655		428	Glutamine synthetase, chl	yes	no	0.978	0.857	0.758	1e-169
P25462		423	Glutamine synthetase, chl	N/A	no	0.965	0.855	0.747	1e-168
P13564		434	Glutamine synthetase leaf	N/A	no	0.877	0.758	0.809	1e-164
Q42899		356	Glutamine synthetase cyto	N/A	no	0.824	0.867	0.776	1e-148

>sp\|O22506\|GLNA2_DAUCA Glutamine synthetase, chloroplastic OS=Daucus carota GN=GLN2 PE=2 SV=1	Back alignment and function desciption

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/372 (86%), Positives = 346/372 (93%)

Query: 1   MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDST 60
           MAQILAPS+QWQMR  K S   S MT+KMW SL +KQNKK   RSS K+R LA+KSED T
Sbjct: 1   MAQILAPSVQWQMRFTKNSTEVSSMTSKMWGSLFLKQNKKAPARSSTKYRALAVKSEDGT 60

Query: 61  VNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSST 120
           +NR+EDLLNLD+TPYTDKIIAEYIWIGGTGID+RSKS+TISKPVEHPSELPKWNYDGSST
Sbjct: 61  INRMEDLLNLDVTPYTDKIIAEYIWIGGTGIDVRSKSRTISKPVEHPSELPKWNYDGSST 120

Query: 121 GQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVS 180
           GQAPG+DSEVILYPQAIFKDPFRGGNNILVICDTYTP GEPIPTNKRH+AA+IFS++KV 
Sbjct: 121 GQAPGDDSEVILYPQAIFKDPFRGGNNILVICDTYTPQGEPIPTNKRHKAAQIFSDAKVL 180

Query: 181 AEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACL 240
            EVPWFGIEQEYTL+QQ+V WPLGW VG YPGPQGPYYC AGADKSFGRDI+DAHYKACL
Sbjct: 181 GEVPWFGIEQEYTLMQQDVNWPLGWNVGGYPGPQGPYYCAAGADKSFGRDISDAHYKACL 240

Query: 241 YAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIE 300
           YAGINISGTNGEVMPGQWE+QVGPSVGI+AGDHIWC+RYLLERITEQAGVVL+LDPKPI+
Sbjct: 241 YAGINISGTNGEVMPGQWEFQVGPSVGIEAGDHIWCARYLLERITEQAGVVLTLDPKPID 300

Query: 301 GDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETAS 360
           GDWNGAGCHTNYSTKSMREEGG+E IKKAILNLSLRHKEHISAYGEGNERRLTGKHETAS
Sbjct: 301 GDWNGAGCHTNYSTKSMREEGGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETAS 360

Query: 361 IDSFSWVCSEDG 372
           IDSFSW  ++ G
Sbjct: 361 IDSFSWGVADRG 372

The light-modulated chloroplast enzyme, encoded by a nuclear gene and expressed primarily in leaves, is responsible for the reassimilation of the ammonia generated by photorespiration.
Daucus carota (taxid: 4039)
EC: 6EC: .EC: 3EC: .EC: 1EC: .EC: 2

>sp\|P15102\|GLNA4_PHAVU Glutamine synthetase leaf isozyme, chloroplastic OS=Phaseolus vulgaris PE=2 SV=1	Back alignment and function description

>sp\|P08281\|GLNA2_PEA Glutamine synthetase leaf isozyme, chloroplastic OS=Pisum sativum GN=GS2 PE=2 SV=2	Back alignment and function description

>sp\|Q9XQ94\|GLNA2_MEDSA Glutamine synthetase leaf isozyme, chloroplastic OS=Medicago sativa GN=GS2 PE=2 SV=1	Back alignment and function description

>sp\|Q43127\|GLNA2_ARATH Glutamine synthetase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GLN2 PE=1 SV=1	Back alignment and function description

>sp\|Q42624\|GLNAC_BRANA Glutamine synthetase, chloroplastic OS=Brassica napus GN=GLN2 PE=2 SV=1	Back alignment and function description

>sp\|P14655\|GLNA2_ORYSJ Glutamine synthetase, chloroplastic OS=Oryza sativa subsp. japonica GN=GLN2 PE=1 SV=1	Back alignment and function description

>sp\|P25462\|GLNAC_MAIZE Glutamine synthetase, chloroplastic OS=Zea mays GN=GLN2 PE=2 SV=1	Back alignment and function description

>sp\|P13564\|GLNA2_HORVU Glutamine synthetase leaf isozyme, chloroplastic OS=Hordeum vulgare PE=2 SV=2	Back alignment and function description

>sp\|Q42899\|GLNA1_LOTJA Glutamine synthetase cytosolic isozyme OS=Lotus japonicus GN=GLN1 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		375
255551511		432	glutamine synthetase plant, putative [Ri	0.992	0.861	0.889	0.0
224107259		432	predicted protein [Populus trichocarpa]	0.992	0.861	0.884	0.0
224102579		432	predicted protein [Populus trichocarpa]	0.992	0.861	0.881	0.0
193290696		432	putative glutamine synthase 2 [Capsicum	0.992	0.861	0.870	0.0
40457328		432	glutamine synthetase GS58 [Nicotiana att	0.992	0.861	0.868	0.0
225432496		432	PREDICTED: glutamine synthetase leaf iso	0.992	0.861	0.876	0.0
8928128		432	RecName: Full=Glutamine synthetase, chlo	0.992	0.861	0.860	0.0
300678122		429	plastid glutamine synthetase [Vigna radi	0.984	0.860	0.879	0.0
121353		429	RecName: Full=Glutamine synthetase leaf	0.984	0.860	0.876	0.0
255648131		432	unknown [Glycine max]	0.992	0.861	0.870	0.0

>gi\|255551511\|ref\|XP_002516801.1\| glutamine synthetase plant, putative [Ricinus communis] gi\|223543889\|gb\|EEF45415.1\| glutamine synthetase plant, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/372 (88%), Positives = 354/372 (95%)

Query: 1   MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDST 60
           MAQILAPS QWQMR+PK S  ASP+TTKMWSSLL+KQNKK T ++S + RV ALKSE+ST
Sbjct: 1   MAQILAPSPQWQMRLPKNSMPASPLTTKMWSSLLLKQNKKVTAKNSGRLRVFALKSENST 60

Query: 61  VNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSST 120
           +NRLEDLLNLDITPYTD+IIAEYIWIGG+GID+RSKS+TISKPVEHPSELPKWNYDGSST
Sbjct: 61  INRLEDLLNLDITPYTDRIIAEYIWIGGSGIDVRSKSRTISKPVEHPSELPKWNYDGSST 120

Query: 121 GQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVS 180
           GQAPGEDSEVILYPQAIFKDPFRGGNNILVICD+YTPAGEPIPTNKR+RAAEIFS+ KV 
Sbjct: 121 GQAPGEDSEVILYPQAIFKDPFRGGNNILVICDSYTPAGEPIPTNKRNRAAEIFSSKKVV 180

Query: 181 AEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACL 240
            EVPWFGIEQEYTLLQ NVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDI+DAHYKACL
Sbjct: 181 DEVPWFGIEQEYTLLQPNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDISDAHYKACL 240

Query: 241 YAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIE 300
           YAGINISGTNGEVMPGQWEYQVGPSVGI+AGDHIWCSRY+LERITEQAGV+L+LDPKPIE
Sbjct: 241 YAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWCSRYILERITEQAGVILTLDPKPIE 300

Query: 301 GDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETAS 360
           GDWNGAGCHTNYSTKSMR+EGGYE IKKAILNLSLRHKEHISAYGEGNERRLTGKHETAS
Sbjct: 301 GDWNGAGCHTNYSTKSMRDEGGYEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETAS 360

Query: 361 IDSFSWVCSEDG 372
           ID+FSW  +  G
Sbjct: 361 IDTFSWGVANRG 372

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224107259\|ref\|XP_002314425.1\| predicted protein [Populus trichocarpa] gi\|222863465\|gb\|EEF00596.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224102579\|ref\|XP_002312733.1\| predicted protein [Populus trichocarpa] gi\|118486227\|gb\|ABK94955.1\| unknown [Populus trichocarpa] gi\|222852553\|gb\|EEE90100.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|193290696\|gb\|ACF17656.1\| putative glutamine synthase 2 [Capsicum annuum]	Back alignment and taxonomy information

>gi\|40457328\|gb\|AAR86719.1\| glutamine synthetase GS58 [Nicotiana attenuata]	Back alignment and taxonomy information

>gi\|225432496\|ref\|XP_002279497.1\| PREDICTED: glutamine synthetase leaf isozyme, chloroplastic [Vitis vinifera] gi\|297736964\|emb\|CBI26165.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|8928128\|sp\|O22506.1\|GLNA2_DAUCA RecName: Full=Glutamine synthetase, chloroplastic; AltName: Full=GS2; AltName: Full=Glutamate--ammonia ligase; Flags: Precursor gi\|2454633\|gb\|AAB71693.1\| glutamine synthetase [Daucus carota]	Back alignment and taxonomy information

>gi\|300678122\|gb\|ADK27329.1\| plastid glutamine synthetase [Vigna radiata]	Back alignment and taxonomy information

>gi\|121353\|sp\|P15102.1\|GLNA4_PHAVU RecName: Full=Glutamine synthetase leaf isozyme, chloroplastic; AltName: Full=Glutamate--ammonia ligase; AltName: Full=Isozyme delta; Flags: Precursor gi\|21005\|emb\|CAA31234.1\| unnamed protein product [Phaseolus vulgaris]	Back alignment and taxonomy information

>gi\|255648131\|gb\|ACU24520.1\| unknown [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		375
TAIR\|locus:2165897		430	GS2 "glutamine synthetase 2" [	0.986	0.860	0.827	2.1e-173
TAIR\|locus:2151739		356	GSR 1 "glutamine synthase clon	0.824	0.867	0.779	2.7e-139
TAIR\|locus:2174175		356	GLN1;4 "glutamine synthetase 1	0.832	0.876	0.766	1.5e-138
TAIR\|locus:2088580		354	GLN1.3 "glutamine synthetase 1	0.824	0.872	0.741	1.6e-132
TAIR\|locus:2198080		353	GLN1;5 "glutamine synthetase 1	0.821	0.872	0.705	1.4e-128
FB\|FBgn0001145		369	Gs2 "Glutamine synthetase 2" [	0.824	0.837	0.572	4.7e-96
ASPGD\|ASPL0000016342		357	glnA [Emericella nidulans (tax	0.829	0.871	0.550	1.3e-93
UNIPROTKB\|G4NG12		358	MGG_14279 "Glutamine synthetas	0.813	0.851	0.547	2.7e-93
WB\|WBGene00001604		388	gln-3 [Caenorhabditis elegans	0.821	0.793	0.557	1.5e-92
SGD\|S000006239		370	GLN1 "Glutamine synthetase (GS	0.786	0.797	0.549	1.5e-90

TAIR\|locus:2165897 GS2 "glutamine synthetase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1685 (598.2 bits), Expect = 2.1e-173, P = 2.1e-173
 Identities = 308/372 (82%), Positives = 342/372 (91%)

Query:     1 MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDST 60
             MAQILA S   QMR+PK+S++ +  ++K+WSS+++KQ K+  N+    FRVLAL+S++ST
Sbjct:     1 MAQILAASPTCQMRVPKHSSVIAS-SSKLWSSVVLKQKKQSNNKVRG-FRVLALQSDNST 58

Query:    61 VNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSST 120
             VNR+E LLNLD  PY+D+IIAEYIWIGG+GID+RSKS+TI KPVE PSELPKWNYDGSST
Sbjct:    59 VNRVETLLNLDTKPYSDRIIAEYIWIGGSGIDLRSKSRTIEKPVEDPSELPKWNYDGSST 118

Query:   121 GQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVS 180
             GQAPGEDSEVILYPQAIF+DPFRGGNNILVICDT+TPAGEPIPTNKR +AAEIFSN KVS
Sbjct:   119 GQAPGEDSEVILYPQAIFRDPFRGGNNILVICDTWTPAGEPIPTNKRAKAAEIFSNKKVS 178

Query:   181 AEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACL 240
              EVPWFGIEQEYTLLQQNVKWPLGWPVGA+PGPQGPYYCG GADK +GRDI+DAHYKACL
Sbjct:   179 GEVPWFGIEQEYTLLQQNVKWPLGWPVGAFPGPQGPYYCGVGADKIWGRDISDAHYKACL 238

Query:   241 YAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIE 300
             YAGINISGTNGEVMPGQWE+QVGPSVGIDAGDH+WC+RYLLERITEQAGVVL+LDPKPIE
Sbjct:   239 YAGINISGTNGEVMPGQWEFQVGPSVGIDAGDHVWCARYLLERITEQAGVVLTLDPKPIE 298

Query:   301 GDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETAS 360
             GDWNGAGCHTNYSTKSMREEGG+E IKKAILNLSLRHKEHISAYGEGNERRLTGKHETAS
Sbjct:   299 GDWNGAGCHTNYSTKSMREEGGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETAS 358

Query:   361 IDSFSWVCSEDG 372
             ID FSW  +  G
Sbjct:   359 IDQFSWGVANRG 370

GO:0003824 "catalytic activity" evidence=IEA

GO:0004356 "glutamate-ammonia ligase activity" evidence=IEA;ISS;IDA;TAS

GO:0006542 "glutamine biosynthetic process" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA;NAS

GO:0007568 "aging" evidence=TAS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0019676 "ammonia assimilation cycle" evidence=TAS

GO:0009579 "thylakoid" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0048046 "apoplast" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR\|locus:2151739 GSR 1 "glutamine synthase clone R1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2174175 GLN1;4 "glutamine synthetase 1;4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2088580 GLN1.3 "glutamine synthetase 1.3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2198080 GLN1;5 "glutamine synthetase 1;5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

FB\|FBgn0001145 Gs2 "Glutamine synthetase 2" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000016342 glnA [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

UNIPROTKB\|G4NG12 MGG_14279 "Glutamine synthetase" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

WB\|WBGene00001604 gln-3 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

SGD\|S000006239 GLN1 "Glutamine synthetase (GS)" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q43127	GLNA2_ARATH	6, ., 3, ., 1, ., 2	0.8279	0.9866	0.8604	yes	no
P14654	GLN12_ORYSJ	6, ., 3, ., 1, ., 2	0.7637	0.824	0.8655	no	no
P00965	GLNA3_PHAVU	6, ., 3, ., 1, ., 2	0.7435	0.832	0.8764	N/A	no
P04770	GLNA1_PHAVU	6, ., 3, ., 1, ., 2	0.7637	0.824	0.8679	N/A	no
P08281	GLNA2_PEA	6, ., 3, ., 1, ., 2	0.8494	0.9866	0.8604	N/A	no
Q43785	GLNA3_MEDSA	6, ., 3, ., 1, ., 2	0.7669	0.824	0.8679	N/A	no
P14655	GLNA2_ORYSJ	6, ., 3, ., 1, ., 2	0.7587	0.9786	0.8574	yes	no
Q12613	GLNA_COLGL	6, ., 3, ., 1, ., 2	0.5605	0.8186	0.8527	N/A	no
P23712	GLNA_LACSA	6, ., 3, ., 1, ., 2	0.7734	0.824	0.8631	N/A	no
Q9FMD9	GLN14_ARATH	6, ., 3, ., 1, ., 2	0.7660	0.832	0.8764	no	no
Q9LVI8	GLN13_ARATH	6, ., 3, ., 1, ., 2	0.7411	0.824	0.8728	no	no
Q43066	GLNA4_PEA	6, ., 3, ., 1, ., 2	0.75	0.832	0.8739	N/A	no
P25462	GLNAC_MAIZE	6, ., 3, ., 1, ., 2	0.7479	0.9653	0.8557	N/A	no
P12424	GLNA_NICPL	6, ., 3, ., 1, ., 2	0.7669	0.824	0.8679	N/A	no
Q8LCE1	GLN12_ARATH	6, ., 3, ., 1, ., 2	0.7896	0.824	0.8679	no	no
P14636	GLNA3_LUPAN	6, ., 3, ., 1, ., 2	0.7475	0.824	0.9809	N/A	no
P15102	GLNA4_PHAVU	6, ., 3, ., 1, ., 2	0.8763	0.984	0.8601	N/A	no
O82560	GLNA2_SOYBN	6, ., 3, ., 1, ., 2	0.7443	0.824	0.8679	no	no
O22506	GLNA2_DAUCA	6, ., 3, ., 1, ., 2	0.8602	0.992	0.8611	N/A	no
P38563	GLNA5_MAIZE	6, ., 3, ., 1, ., 2	0.7702	0.824	0.8655	N/A	no
O22504	GLNA1_DAUCA	6, ., 3, ., 1, ., 2	0.7475	0.8213	0.875	N/A	no
P38561	GLNA3_MAIZE	6, ., 3, ., 1, ., 2	0.7572	0.824	0.8679	N/A	no
O04867	GLNA1_ALNGL	6, ., 3, ., 1, ., 2	0.7831	0.824	0.8679	N/A	no
Q42624	GLNAC_BRANA	6, ., 3, ., 1, ., 2	0.8064	0.9813	0.8598	N/A	no
P08282	GLNA1_PEA	6, ., 3, ., 1, ., 2	0.7572	0.824	0.8704	N/A	no
Q56WN1	GLN11_ARATH	6, ., 3, ., 1, ., 2	0.7799	0.824	0.8679	no	no
Q4W8D0	GLN13_ORYSJ	6, ., 3, ., 1, ., 2	0.7281	0.824	0.8351	no	no
P51118	GLNA1_VITVI	6, ., 3, ., 1, ., 2	0.7766	0.824	0.8679	no	no
P51119	GLNA2_VITVI	6, ., 3, ., 1, ., 2	0.7766	0.824	0.8679	no	no
P38562	GLNA4_MAIZE	6, ., 3, ., 1, ., 2	0.7637	0.824	0.8704	N/A	no
P13564	GLNA2_HORVU	6, ., 3, ., 1, ., 2	0.8090	0.8773	0.7580	N/A	no
P52782	GLNA_LUPLU	6, ., 3, ., 1, ., 2	0.7605	0.824	0.8753	N/A	no
P52783	GLNA_PINSY	6, ., 3, ., 1, ., 2	0.7443	0.824	0.8655	N/A	no
P24099	GLNA1_SOYBN	6, ., 3, ., 1, ., 2	0.7508	0.8213	0.8676	no	no
P20478	GLNA2_DROME	6, ., 3, ., 1, ., 2	0.5696	0.824	0.8373	yes	no
Q9XQ94	GLNA2_MEDSA	6, ., 3, ., 1, ., 2	0.8440	0.9813	0.8598	N/A	no
Q42899	GLNA1_LOTJA	6, ., 3, ., 1, ., 2	0.7766	0.824	0.8679	N/A	no
P38559	GLNA1_MAIZE	6, ., 3, ., 1, ., 2	0.7766	0.824	0.8655	N/A	no
P04078	GLNA1_MEDSA	6, ., 3, ., 1, ., 2	0.7799	0.824	0.8679	N/A	no
P32289	GLNA_VIGAC	6, ., 3, ., 1, ., 2	0.7702	0.824	0.8679	N/A	no
Q42688	GLNA1_CHLRE	6, ., 3, ., 1, ., 2	0.5735	0.832	0.8167	N/A	no
Q86ZF9	GLNA_NEUCR	6, ., 3, ., 1, ., 2	0.5482	0.84	0.8701	N/A	no
P07694	GLNA3_PEA	6, ., 3, ., 1, ., 2	0.7532	0.832	0.8739	N/A	no
Q06378	GLNA3_HORVU	6, ., 3, ., 1, ., 2	0.7407	0.792	0.8342	N/A	no
P14656	GLN11_ORYSJ	6, ., 3, ., 1, ., 2	0.7799	0.824	0.8679	no	no
P38560	GLNA2_MAIZE	6, ., 3, ., 1, ., 2	0.7392	0.8053	0.8206	N/A	no
P04771	GLNA2_PHAVU	6, ., 3, ., 1, ., 2	0.7605	0.824	0.8679	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.1	0.983
3rd Layer	6.3.1.2	0.979

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_X4165	glutamine synthetase (432 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.184.28.1	malate dehydrogenase (213 aa)	•	0.508
	grail3.0001073802	SubName- Full=Putative uncharacterized protein; (354 aa)	•	0.508
	fgenesh4_pm.C_LG_I001100	malate dehydrogenase (EC-1.1.1.37) (356 aa)	•	0.508
	fgenesh4_pg.C_LG_IV000431	malate dehydrogenase (EC-1.1.1.37) (348 aa)	•	0.508
	eugene3.00081537	RecName- Full=Malate dehydrogenase; EC=1.1.1.37; (332 aa)	•	0.508
	eugene3.00021311	hypothetical protein (334 aa)	•	0.508
	eugene3.00021309	malate dehydrogenase (EC-1.1.1.37) (332 aa)	•	0.508
	estExt_fgenesh4_pg.C_LG_XI0680	RecName- Full=Malate dehydrogenase; EC=1.1.1.37; (341 aa)	•	0.508
	estExt_fgenesh4_pg.C_LG_VII1232	malate dehydrogenase (EC-1.1.1.37) (355 aa)	•	0.508
	estExt_Genewise1_v1.C_LG_I4975	malate dehydrogenase (EC-1.1.1.37) (340 aa)	•	0.508

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		375
PLN03036		432	PLN03036, PLN03036, glutamine synthetase; Provisio	0.0
PLN02284		354	PLN02284, PLN02284, glutamine synthetase	0.0
pfam00120		259	pfam00120, Gln-synt_C, Glutamine synthetase, catal	2e-63
COG0174		443	COG0174, GlnA, Glutamine synthetase [Amino acid tr	6e-52
pfam03951		84	pfam03951, Gln-synt_N, Glutamine synthetase, beta-	5e-19
TIGR00653		459	TIGR00653, GlnA, glutamine synthetase, type I	7e-13
COG3968		724	COG3968, COG3968, Uncharacterized protein related	6e-05

>gnl\|CDD\|178603 PLN03036, PLN03036, glutamine synthetase; Provisional	Back alignment and domain information

 Score =  761 bits (1967), Expect = 0.0
 Identities = 333/366 (90%), Positives = 353/366 (96%)

Query: 1   MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDST 60
           MAQILAPS Q QMR+PK S +A+PMT+K+WSSL++KQ KKGT + S KFRVLAL+SE+ST
Sbjct: 1   MAQILAPSPQCQMRVPKNSAVAAPMTSKLWSSLVLKQKKKGTAKVSGKFRVLALQSENST 60

Query: 61  VNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSST 120
           VNR+EDLLNLD TPYTD+IIAEYIWIGG+GID+RSKS+TISKPVEHPSELPKWNYDGSST
Sbjct: 61  VNRVEDLLNLDTTPYTDRIIAEYIWIGGSGIDLRSKSRTISKPVEHPSELPKWNYDGSST 120

Query: 121 GQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVS 180
           GQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSN KV 
Sbjct: 121 GQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNKKVV 180

Query: 181 AEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACL 240
            EVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDI+DAHYKACL
Sbjct: 181 DEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDISDAHYKACL 240

Query: 241 YAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIE 300
           YAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRY+LERITEQAGVVL+LDPKPIE
Sbjct: 241 YAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPIE 300

Query: 301 GDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETAS 360
           GDWNGAGCHTNYSTKSMREEGG+E IKKAILNLSLRHKEHISAYGEGNERRLTGKHETAS
Sbjct: 301 GDWNGAGCHTNYSTKSMREEGGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETAS 360

Query: 361 IDSFSW 366
           ID+FSW
Sbjct: 361 IDTFSW 366

Length = 432

>gnl\|CDD\|177922 PLN02284, PLN02284, glutamine synthetase	Back alignment and domain information

>gnl\|CDD\|215731 pfam00120, Gln-synt_C, Glutamine synthetase, catalytic domain	Back alignment and domain information

>gnl\|CDD\|223252 COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|217811 pfam03951, Gln-synt_N, Glutamine synthetase, beta-Grasp domain	Back alignment and domain information

>gnl\|CDD\|233073 TIGR00653, GlnA, glutamine synthetase, type I	Back alignment and domain information

>gnl\|CDD\|226477 COG3968, COG3968, Uncharacterized protein related to glutamine synthetase [General function prediction only]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		375
PLN03036		432	glutamine synthetase; Provisional	100.0
PLN02284		354	glutamine synthetase	100.0
COG0174		443	GlnA Glutamine synthetase [Amino acid transport an	100.0
TIGR00653		460	GlnA glutamine synthetase, type I. Alternate name:	100.0
PRK09469		469	glnA glutamine synthetase; Provisional	100.0
TIGR03105		435	gln_synth_III glutamine synthetase, type III. This	100.0
KOG0683		380	consensus Glutamine synthetase [Amino acid transpo	100.0
PF00120		259	Gln-synt_C: Glutamine synthetase, catalytic domain	100.0
COG3968		724	Uncharacterized protein related to glutamine synth	99.61
PF03951		84	Gln-synt_N: Glutamine synthetase, beta-Grasp domai	99.53
TIGR02050		287	gshA_cyan_rel uncharacterized enzyme. This family	98.4
PRK13517		373	carboxylate-amine ligase; Provisional	98.22
PRK13516		373	gamma-glutamyl:cysteine ligase; Provisional	98.13
PLN02611		482	glutamate--cysteine ligase	98.02
PRK13515		371	carboxylate-amine ligase; Provisional	97.98
PF04107		288	GCS2: Glutamate-cysteine ligase family 2(GCS2); In	97.84
PRK13518		357	carboxylate-amine ligase; Provisional	97.76
TIGR02048		376	gshA_cyano glutamate--cysteine ligase, cyanobacter	97.61
TIGR01436		446	glu_cys_lig_pln glutamate--cysteine ligase, plant	97.54
TIGR03444		390	gshA_related glutamate--cysteine ligase family pro	96.32
COG2170		369	Uncharacterized conserved protein [Function unknow	95.56
COG3572		456	GshA Gamma-glutamylcysteine synthetase [Coenzyme m	86.33
cd04869		81	ACT_GcvR_2 ACT domains that comprise the Glycine C	82.64
PF06877		104	RraB: Regulator of ribonuclease activity B; InterP	82.05
PF13740		76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	80.08

>PLN03036 glutamine synthetase; Provisional	Back alignment and domain information

Probab=100.00  E-value=2.7e-100  Score=768.91  Aligned_cols=375  Identities=89%  Similarity=1.453  Sum_probs=349.3

Q ss_pred             CcccCCccccceeccccccCCCCCchhhhhhhHHHHHhhccCcccccceEEEEeecCcchHHHHHHHHhccCCCCCCeeE
Q 017214            1 MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDSTVNRLEDLLNLDITPYTDKII   80 (375)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~   80 (375)
                      |||||+||+||||||+|.++.|.++++++|+|+++||+|++..+...+|+++++.+..+.++.++.+++....+++++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (432)
T PLN03036          1 MAQILAPSPQCQMRVPKNSAVAAPMTSKLWSSLVLKQKKKGTAKVSGKFRVLALQSENSTVNRVEDLLNLDTTPYTDRII   80 (432)
T ss_pred             CCcccccccccccCCCCCCCcccccccceecccchhhhhhhhhhcccceeeeeccccchhhhhHHHHhhhcccccCCeEE
Confidence            99999999999999999999999999999999999999998877789999999877665677888898888777778999


Q ss_pred             EEEEEEecccccccceeeeeccCCCCCCCCCCccccCCCCCCCCCCCccEEEEeEeceecCCCCCCeEEEEEEeecCCCc
Q 017214           81 AEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGE  160 (375)
Q Consensus        81 ve~i~vd~~g~DlrGk~~~~~vp~~~~~~~~~~~fDgss~g~~~~~~~D~~l~PD~l~~~Pw~~~~~a~Vlcd~~~~dG~  160 (375)
                      +||||||++|.|||||+|++.+|++.++++|+|+||||++|+.+++++|++|+||.++++||+++++++|+||+|++||+
T Consensus        81 ~~yiw~~g~~~dlrgk~r~~~~~~~~~~~~~~w~fDGSs~g~a~~~~sD~~l~PDTl~~~Pw~~~~~a~Vlcd~y~~dG~  160 (432)
T PLN03036         81 AEYIWIGGSGIDLRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGE  160 (432)
T ss_pred             EEEEEeCCCCCCCCCCeEEeCccccccccCCceeeecCccCCCcCCCCCEEEEccEEEECCcCCCCeEEEEEEEECCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999876799999999999999


Q ss_pred             cCCCCHHHHHHHHHHhhhcCCCcceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccCCccChhHHHHHHHHHHHHHH
Q 017214          161 PIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACL  240 (375)
Q Consensus       161 P~~~~PR~vL~~~l~~l~~~G~~~~vg~E~EF~L~~~~~~~~~g~~~~~~~~~~~~~y~~~~~~~~~~~~i~~~l~~al~  240 (375)
                      |++.|||++|++++++++..|+++++|+|+|||||+.+.+++.|||.++.|.++++||+..+.+..+.++++++|+++|+
T Consensus       161 P~~~dpR~~L~~vl~~~~~~g~~p~~G~E~EF~Lf~~~~~~~~G~~~~~~p~p~g~yy~~~~~d~~~~~~i~~~i~~a~~  240 (432)
T PLN03036        161 PIPTNKRHRAAEIFSNKKVVDEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDISDAHYKACL  240 (432)
T ss_pred             CCCCCHHHHHHHHHHHhcccCCeEEEEeeeEEEEEEcccccccCCCCCCccCCCCCcCCCchhhhhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999865445567776667788999999888887778999999999999


Q ss_pred             HcCceeeeecCCCCCCcEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCcCCCCCCceeeeeeeccccccc
Q 017214          241 YAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREE  320 (375)
Q Consensus       241 ~~GI~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmpKP~~~~~~GsG~HvH~SL~~~~~~  320 (375)
                      ++||+|+++|+|+|||||||++.|+++|+|||+++++|++||+||++||++|||||||+.++|+|||||+|+||++++++
T Consensus       241 ~~GI~Ie~~~~E~gpGQ~Ei~l~~~d~L~aAD~~~l~R~ivk~VA~~~Gl~ATFMPKP~~gd~~GSGmHiH~Sl~d~r~~  320 (432)
T PLN03036        241 YAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREE  320 (432)
T ss_pred             HCCCCeEEEEcCcCCCceEEecCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCcCCCCcCCCCceeEechhhcccc
Confidence            99999999999999999999999999999999999999999999999999999999998755899999999999997766


Q ss_pred             CCHHHHHHHHHHHhHhhHHHhhccccccccCCCCCCCCCCCCceeeecCCCCCCC
Q 017214          321 GGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWVCSEDGPIF  375 (375)
Q Consensus       321 ~g~n~~~~~iaGl~L~h~~al~a~~~NSYkRl~~~~~ap~~~~~~WG~~NRsaa~  375 (375)
                      ||.++|+++++||+|+|+++|+||++||||||++++|||++.+++||++||+++|
T Consensus       321 gg~~~~~~~i~gl~l~H~~~i~A~~~NsykRL~~~~ea~~p~~~swG~~NR~asI  375 (432)
T PLN03036        321 GGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDTFSWGVANRGCSI  375 (432)
T ss_pred             chHHHHHHHHhhHHHHHHHHHHhhhcChhhccCCCccccCCccceEeccCCcceE
Confidence            7889999999996699999999999999999999999955559999999999975

>PLN02284 glutamine synthetase	Back alignment and domain information

>COG0174 GlnA Glutamine synthetase [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR00653 GlnA glutamine synthetase, type I	Back alignment and domain information

>PRK09469 glnA glutamine synthetase; Provisional	Back alignment and domain information

>TIGR03105 gln_synth_III glutamine synthetase, type III	Back alignment and domain information

>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism]	Back alignment and domain information

>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6	Back alignment and domain information

>COG3968 Uncharacterized protein related to glutamine synthetase [General function prediction only]	Back alignment and domain information

>PF03951 Gln-synt_N: Glutamine synthetase, beta-Grasp domain; InterPro: IPR008147 Glutamine synthetase (6	Back alignment and domain information

>TIGR02050 gshA_cyan_rel uncharacterized enzyme	Back alignment and domain information

>PRK13517 carboxylate-amine ligase; Provisional	Back alignment and domain information

>PRK13516 gamma-glutamyl:cysteine ligase; Provisional	Back alignment and domain information

>PLN02611 glutamate--cysteine ligase	Back alignment and domain information

>PRK13515 carboxylate-amine ligase; Provisional	Back alignment and domain information

>PF04107 GCS2: Glutamate-cysteine ligase family 2(GCS2); InterPro: IPR006336 Also known as gamma-glutamylcysteine synthetase and gamma-ECS (6	Back alignment and domain information

>PRK13518 carboxylate-amine ligase; Provisional	Back alignment and domain information

>TIGR02048 gshA_cyano glutamate--cysteine ligase, cyanobacterial, putative	Back alignment and domain information

>TIGR01436 glu_cys_lig_pln glutamate--cysteine ligase, plant type	Back alignment and domain information

>TIGR03444 gshA_related glutamate--cysteine ligase family protein	Back alignment and domain information

>COG2170 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG3572 GshA Gamma-glutamylcysteine synthetase [Coenzyme metabolism]	Back alignment and domain information

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains	Back alignment and domain information

>PF06877 RraB: Regulator of ribonuclease activity B; InterPro: IPR009671 This entry occurs in several hypothetical bacterial proteins of around 120 residues in length	Back alignment and domain information

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		375
2d3a_A		356	Crystal Structure Of The Maize Glutamine Synthetase		1e-146
3fky_A		370	Crystal Structure Of The Glutamine Synthetase Gln1d		7e-95
2uu7_A		381	Crystal Structure Of Apo Glutamine Synthetase From		1e-94
2ojw_A		384	Crystal Structure Of Human Glutamine Synthetase In		4e-94

>pdb|2D3A|A Chain A, Crystal Structure Of The Maize Glutamine Synthetase Complexed With Adp And Methionine Sulfoximine Phosphate Length = 356

Back alignment and structure

Iteration: 1

Score = 515 bits (1326), Expect = e-146, Method: Compositional matrix adjust. Identities = 236/309 (76%), Positives = 274/309 (88%) Query: 64 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQA 123 L DL+NL+++ T+KIIAEYIWIGG+G+D+RSK++T+ PV PS+LPKWNYDGSSTGQA Sbjct: 4 LTDLVNLNLSDTTEKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQA 63 Query: 124 PGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEV 183 PGEDSEVILYPQAIFKDPFR GNNILV+CD YTPAGEPIPTNKR+ AA+IFS+ +V+AE Sbjct: 64 PGEDSEVILYPQAIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYSAAKIFSSPEVAAEE 123 Query: 184 PWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAG 243 PW+GIEQEYTLLQ++ WPLGWP+G +PGPQGPYYCG GA+KSFGRDI DAHYKACLYAG Sbjct: 124 PWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACLYAG 183 Query: 244 INISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDW 303 INISG NGEVMPGQWE+QVGPSVGI +GD +W +RY+LERITE AGVV++ DPKPI GDW Sbjct: 184 INISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFDPKPIPGDW 243 Query: 304 NGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDS 363 NGAG HTNYST+SMR+EGGYE IK AI L LRHKEHI+AYGEGNERRLTG+HETA I++ Sbjct: 244 NGAGAHTNYSTESMRKEGGYEVIKAAIEKLKLRHKEHIAAYGEGNERRLTGRHETADINT 303 Query: 364 FSWVCSEDG 372 FSW + G Sbjct: 304 FSWGVANRG 312

PyMOL of 2d3a

>pdb|3FKY|A Chain A, Crystal Structure Of The Glutamine Synthetase Gln1deltan18 From The Yeast Saccharomyces Cerevisiae Length = 370

Back alignment and structure

>pdb|2UU7|A Chain A, Crystal Structure Of Apo Glutamine Synthetase From Dog ( Canis Familiaris) Length = 381

Back alignment and structure

>pdb|2OJW|A Chain A, Crystal Structure Of Human Glutamine Synthetase In Complex With Adp And Phosphate Length = 384

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		375
2d3a_A		356	Glutamine synthetase; ligase; HET: P3S ADP; 2.63A	1e-170
2ojw_A		384	Glutamine synthetase; amino-acid biosynthesis, lig	1e-159
3fky_A		370	Glutamine synthetase; beta-grAsp, catalytic domain	1e-156
3o6x_A		729	Glutamine synthetase; type III, beta barrel,dodeca	3e-09
2j9i_A		421	Glutamate-ammonia ligase domain-containing protein	3e-09
3qaj_A		444	Glutamine synthetase; AMP-PCP, ACP, ligase; HET: G	1e-07
3ng0_A		473	Glutamine synthetase; GSI, nitrogen metabolism, sy	4e-07
2bvc_A		486	Glutamine synthetase 1; ligase, transition state m	2e-06
1f52_A		468	Glutamine synthetase; ADP, MPD, ligase; HET: ADP;	2e-06

>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A* Length = 356	Back alignment and structure

 Score =  478 bits (1233), Expect = e-170
 Identities = 235/304 (77%), Positives = 272/304 (89%)

Query: 63  RLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQ 122
            L DL+NL+++  T+KIIAEYIWIGG+G+D+RSK++T+  PV  PS+LPKWNYDGSSTGQ
Sbjct: 3   CLTDLVNLNLSDTTEKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQ 62

Query: 123 APGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAE 182
           APGEDSEVILYPQAIFKDPFR GNNILV+CD YTPAGEPIPTNKR+ AA+IFS+ +V+AE
Sbjct: 63  APGEDSEVILYPQAIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYSAAKIFSSPEVAAE 122

Query: 183 VPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYA 242
            PW+GIEQEYTLLQ++  WPLGWP+G +PGPQGPYYCG GA+KSFGRDI DAHYKACLYA
Sbjct: 123 EPWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACLYA 182

Query: 243 GINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGD 302
           GINISG NGEVMPGQWE+QVGPSVGI +GD +W +RY+LERITE AGVV++ DPKPI GD
Sbjct: 183 GINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFDPKPIPGD 242

Query: 303 WNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASID 362
           WNGAG HTNYST+SMR+EGGYE IK AI  L LRHKEHI+AYGEGNERRLTG+HETA I+
Sbjct: 243 WNGAGAHTNYSTESMRKEGGYEVIKAAIEKLKLRHKEHIAAYGEGNERRLTGRHETADIN 302

Query: 363 SFSW 366
           +FSW
Sbjct: 303 TFSW 306

PyMOL of 2d3a

>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural GENO structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A Length = 384	Back alignment and structure

>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae} Length = 370	Back alignment and structure

>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET: P3S ADP; 3.50A {Bacteroides fragilis} Length = 729	Back alignment and structure

>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus} Length = 421	Back alignment and structure

>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET: ANP; 2.80A {Synechocystis SP} Length = 473	Back alignment and structure

>2bvc_A Glutamine synthetase 1; ligase, transition state mimic; HET: P3S ADP; 2.1A {Mycobacterium tuberculosis} SCOP: d.15.9.1 d.128.1.1 PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 1hto_A* 1htq_A* Length = 486	Back alignment and structure

>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A* 1fpy_A* 1lgr_A* 2lgs_A* 2gls_A Length = 468	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		375
3fky_A		370	Glutamine synthetase; beta-grAsp, catalytic domain	100.0
2d3a_A		356	Glutamine synthetase; ligase; HET: P3S ADP; 2.63A	100.0
2ojw_A		384	Glutamine synthetase; amino-acid biosynthesis, lig	100.0
3qaj_A		444	Glutamine synthetase; AMP-PCP, ACP, ligase; HET: G	100.0
3ng0_A		473	Glutamine synthetase; GSI, nitrogen metabolism, sy	100.0
4hpp_A		443	Probable glutamine synthetase; glutamine synthase	100.0
1f52_A		468	Glutamine synthetase; ADP, MPD, ligase; HET: ADP;	100.0
4acf_A		486	Glutamine synthetase 1; ligase, nucleotide-binding	100.0
2j9i_A		421	Glutamate-ammonia ligase domain-containing protein	100.0
3o6x_A		729	Glutamine synthetase; type III, beta barrel,dodeca	100.0
2gwd_A		449	Glutamate cysteine ligase; disulfide bridges, glut	98.11
1r8g_A		372	Hypothetical protein YBDK; structural genomics, un	97.81
3ln6_A		750	Glutathione biosynthesis bifunctional protein GSH;	93.89
3ln7_A		757	Glutathione biosynthesis bifunctional protein GSH;	91.53
1va6_A		518	Glutamate--cysteine ligase; glutathione homeostasi	84.76

>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae}	Back alignment and structure

Probab=100.00  E-value=8.7e-82  Score=626.91  Aligned_cols=306  Identities=54%  Similarity=1.012  Sum_probs=262.7

Q ss_pred             HHHHHHHhccCCCCCCeeEEEEEEEecccccccceeeeeccCCCCCCCCCCccccCCCCCCCCCCCccEEEEeEeceecC
Q 017214           62 NRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDP  141 (375)
Q Consensus        62 ~~~~~~l~~~~~p~~~~~~ve~i~vd~~g~DlrGk~~~~~vp~~~~~~~~~~~fDgss~g~~~~~~~D~~l~PD~l~~~P  141 (375)
                      ..+++|++.   ++.++..|+|+|+|++|. +|||++++....+.++++|+|+||||++|+.+++++|++|+||.++++|
T Consensus        10 ~~~~~~~~l---~~~~i~~v~~~~~D~~G~-lR~K~~~~~~~~~~~~~~~~~~fDGss~g~~~~~~sD~~l~Pdt~~~~P   85 (370)
T 3fky_A           10 QILQKYLEL---DQRGRIIAEYVWIDGTGN-LRSKGRTLKKRITSIDQLPEWNFDGSSTNQAPGHDSDIYLKPVAYYPDP   85 (370)
T ss_dssp             --------------CCCEEEEEEEECSSSC-EEEEEEEESSCCCSGGGSCCEEECGGGTTSSCCCC--EEEEEEEEEECT
T ss_pred             HHHHHHhCc---ccCCeEEEEEEEEcCCCC-eEEEEEECccccchHHhCCccccCCcccccccCCCCCeeEeeeEEEEcC
Confidence            567788887   455799999999999996 9999998776666677778999999999998889999999999999999


Q ss_pred             CCCCCeEEEEEEeecCCCccCCCCHHHHHHHHHHhhhcCCCcceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccCC
Q 017214          142 FRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGA  221 (375)
Q Consensus       142 w~~~~~a~Vlcd~~~~dG~P~~~~PR~vL~~~l~~l~~~G~~~~vg~E~EF~L~~~~~~~~~g~~~~~~~~~~~~~y~~~  221 (375)
                      |+++++++|+||++++||+|++.|||++|++++++++  |+++++|+|+|||||+.+. .+.+||.++.|.++++||+..
T Consensus        86 w~~~~~a~vlcd~~~~dG~P~~~~pR~iLkr~~~~~~--g~~~~~G~E~EF~Lf~~~~-~~~~~p~~~~p~~~g~yy~~~  162 (370)
T 3fky_A           86 FRRGDNIVVLAACYNNDGTPNKFNHRHEAAKLFAAHK--DEEIWFGLEQEYTLFDMYD-DVYGWPKGGYPAPQGPYYCGV  162 (370)
T ss_dssp             TTCTTCEEEEEEEECTTSSBCTTCCHHHHHHHHHHTG--GGCCEEEEEEEEEEECTTS-SBTTCCTTSBCSCSSSCTTCC
T ss_pred             CCCCCeEEEEEEEEcCCCCCCCCCHHHHHHHHHHHhc--CCCceEEeeeEEEEEccCC-CcccCCCCCccCCCCcccccc
Confidence            9997799999999999999999999999999999876  9999999999999999763 366888777889999999987


Q ss_pred             ccChhHHHHHHHHHHHHHHHcCceeeeecCCCCCCcEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCcCC
Q 017214          222 GADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEG  301 (375)
Q Consensus       222 ~~~~~~~~~i~~~l~~al~~~GI~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmpKP~~~  301 (375)
                      +.+..+.++++++|+++|+++||+||++|||+|||||||++.|+++|++||+++++|++||+||++||++|||||||+.+
T Consensus       163 ~~~~~~~~~i~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~~~~~~~l~aAD~~~~~K~~vk~vA~~~G~~ATFmpKP~~g  242 (370)
T 3fky_A          163 GAGKVYARDMIEAHYRACLYAGLEISGINAEVMPSQWEFQVGPCTGIDMGDQLWMARYFLHRVAEEFGIKISFHPKPLKG  242 (370)
T ss_dssp             STTTCSCHHHHHHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETHHHHHHHHHHHHHHHHHHHTTTCEEECCSCSSSS
T ss_pred             chhhHHHHHHHHHHHHHHHHcCCCeeeeecCcCCCceEEecCCCCHHHHHHHHHHHHHHHHHHHHHhCcEEEEcccccCC
Confidence            76665679999999999999999999999999999999999999999999999999999999999999999999999994


Q ss_pred             CCCCceeeeeeecccccccCCHHHHHHHHHHHhH-hhHHHhhccccccccCCCCCCCCCCCCceeeecCCCCCCC
Q 017214          302 DWNGAGCHTNYSTKSMREEGGYETIKKAILNLSL-RHKEHISAYGEGNERRLTGKHETASIDSFSWVCSEDGPIF  375 (375)
Q Consensus       302 ~~~GsG~HvH~SL~~~~~~~g~n~~~~~iaGl~L-~h~~al~a~~~NSYkRl~~~~~ap~~~~~~WG~~NRsaa~  375 (375)
                      +++|||||+|+|||++++++|.+.+++||+|| + +|+++|+||+.||||||+|++|||++.+++||++||+|+|
T Consensus       243 d~~GSG~H~H~Sl~~~~~~~g~~~~~~~i~gl-~~~h~~~i~a~~~nSYkRL~~~~eap~~~~~sWG~~NRsa~i  316 (370)
T 3fky_A          243 DWNGAGCHANVSTKEMRQPGGTKYIEQAIEKL-SKRHAEHIKLYGSDNDMRLTGRHETASMTAFSSGVANRGSSI  316 (370)
T ss_dssp             SSCCCBEEEEEECHHHHSSSTHHHHHHHHHHH-HHTHHHHHHSSCTTGGGC--------CCSCCCEEESCTTSSE
T ss_pred             CCCcccceeeeccccccCCCCHHHHHHHHHHH-HHHhHHHHHHHccchhhhcCCCccCCCcccceEecCCCceeE
Confidence            37999999999999876567888899999999 6 9999999999999999999999998435899999999985

PyMOL of 3fky

>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A*	Back alignment and structure

>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural GENO structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A	Back alignment and structure

>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET: ANP; 2.80A {Synechocystis SP}	Back alignment and structure

>4hpp_A Probable glutamine synthetase; glutamine synthase homolog, glutamate, polyamine, ligase; HET: GLU; 2.50A {Pseudomonas aeruginosa}	Back alignment and structure

>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A* 1fpy_A* 1lgr_A* 2lgs_A* 2gls_A	Back alignment and structure

>4acf_A Glutamine synthetase 1; ligase, nucleotide-binding, TRI-substituted IMID TAUT state, RV2220, GLNA1; HET: 46B P3S; 2.00A {Mycobacterium tuberculosis} PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 2bvc_A* 1hto_A* 1htq_A*	Back alignment and structure

>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus}	Back alignment and structure

>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET: P3S ADP; 3.50A {Bacteroides fragilis}	Back alignment and structure

>2gwd_A Glutamate cysteine ligase; disulfide bridges, glutathione biosynthesis, beta-hairpin, R regulation; HET: GLU; 2.09A {Brassica juncea} PDB: 2gwc_A*	Back alignment and structure

>1r8g_A Hypothetical protein YBDK; structural genomics, unknown function, carboxylate-amine ligase, structure 2 function project, S2F; 2.15A {Escherichia coli} SCOP: d.128.1.3 PDB: 1tt4_A	Back alignment and structure

>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}	Back alignment and structure

>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}	Back alignment and structure

>1va6_A Glutamate--cysteine ligase; glutathione homeostasis, beta barrel, peptide synthesis, transition state analogue; HET: P2S ADP P6G; 2.10A {Escherichia coli} SCOP: d.128.1.4 PDB: 1v4g_A* 2d32_A* 2d33_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		375
d1f52a2		368	d.128.1.1 (A:101-468) Glutamine synthetase, C-term	4e-04
d1f52a1		100	d.15.9.1 (A:1-100) Glutamine synthetase, N-termina	0.003

>d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 368	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Glutamine synthetase/guanido kinase
superfamily: Glutamine synthetase/guanido kinase
family: Glutamine synthetase catalytic domain
domain: Glutamine synthetase, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 39.8 bits (92), Expect = 4e-04
 Identities = 30/151 (19%), Positives = 46/151 (30%), Gaps = 25/151 (16%)

Query: 181 AEVPWFGIEQEYTLLQQNV----------------------KWPLGWPVGAYPGPQGPYY 218
           A+   FG E E+ L                               G   G  PG +G Y+
Sbjct: 21  ADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRPGVKGGYF 80

Query: 219 CGAGADKSFGRDIADAHYKACLYAGINISGTNGEVM-PGQWEYQVGPSVGIDAGDHIWCS 277
                D    +DI           G+ +   + EV   GQ E     +      D I   
Sbjct: 81  PVPPVD--SAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIY 138

Query: 278 RYLLERITEQAGVVLSLDPKPIEGDWNGAGC 308
           +Y++  +  + G   +  PKP+ GD      
Sbjct: 139 KYVVHNVAHRFGKTATFMPKPMFGDNGSGMH 169

PyMOL of d1f52a2

>d1f52a1 d.15.9.1 (A:1-100) Glutamine synthetase, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 100	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		375
d1f52a2		368	Glutamine synthetase, C-terminal domain {Salmonell	100.0
d2bvca2		374	Glutamine synthetase, C-terminal domain {Mycobacte	100.0
d1f52a1		100	Glutamine synthetase, N-terminal domain {Salmonell	99.59
d2bvca1		100	Glutamine synthetase, N-terminal domain {Mycobacte	99.57
d1r8ga_		368	Carboxylate-amine ligase YbdK {Escherichia coli [T	98.12

>d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Glutamine synthetase/guanido kinase
superfamily: Glutamine synthetase/guanido kinase
family: Glutamine synthetase catalytic domain
domain: Glutamine synthetase, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=8.5e-55  Score=429.87  Aligned_cols=207  Identities=21%  Similarity=0.266  Sum_probs=176.7

Q ss_pred             CCCHHHHHHHHHHhhhcCCCcc--eEeeeeeEEEeccCC---------------CC-------CCCCCCCCCCCCCCCCc
Q 017214          163 PTNKRHRAAEIFSNSKVSAEVP--WFGIEQEYTLLQQNV---------------KW-------PLGWPVGAYPGPQGPYY  218 (375)
Q Consensus       163 ~~~PR~vL~~~l~~l~~~G~~~--~vg~E~EF~L~~~~~---------------~~-------~~g~~~~~~~~~~~~~y  218 (375)
                      +.|||++|||+++++++.|+.+  .+|+|+|||||+...               .+       ..+...+..+..+++||
T Consensus         1 ~~dPR~iLkr~~~~l~~~G~~~~~~~g~E~EF~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (368)
T d1f52a2           1 DRDPRSIAKRAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRPGVKGGYF   80 (368)
T ss_dssp             TTCHHHHHHHHHHHHHHHTSCSEEEEEEEEEEEEESEEEEEEETTEEEEEEECTTCGGGGGCCCTTCCCCCCCCTTCCSS
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCceEEEeceEEEEEeccccccCcCCCccccCCccccccCCCcccCCCCCCccccCCcee
Confidence            4699999999999999999965  559999999997421               00       00111122345567888


Q ss_pred             cCCccChhHHHHHHHHHHHHHHHcCceeeeecCCCC-CCcEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEeeccc
Q 017214          219 CGAGADKSFGRDIADAHYKACLYAGINISGTNGEVM-PGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPK  297 (375)
Q Consensus       219 ~~~~~~~~~~~~i~~~l~~al~~~GI~ve~~h~E~g-pGQ~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmpK  297 (375)
                      +....+.  ..+++++|.+.|+.+||+|+++|+|++ ||||||++.|.++|+|||+++++|++||+||++||+.||||||
T Consensus        81 ~~~~~~~--~~~~~~~i~~~l~~~Gi~ve~~~~E~~~~gq~Ei~~~~~~~l~aAD~~~~~k~~ik~iA~~~Gl~atFmpK  158 (368)
T d1f52a2          81 PVPPVDS--AQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPK  158 (368)
T ss_dssp             BCTTSSC--CHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTCEEECCSC
T ss_pred             eeeccch--HHHHHHHHHHHHHhhccCeeeeecccccCCceeecCCCCchHHHHHHHHHHHHHHHHHHHHhcceeeEecc
Confidence            8888876  578888999999999999999999998 6999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCceeeeeeecccccc-------cCC-HHHHHHHHHHHhHhhHHHhhccc---cccccCCCCCCCCCCCCceee
Q 017214          298 PIEGDWNGAGCHTNYSTKSMRE-------EGG-YETIKKAILNLSLRHKEHISAYG---EGNERRLTGKHETASIDSFSW  366 (375)
Q Consensus       298 P~~~~~~GsG~HvH~SL~~~~~-------~~g-~n~~~~~iaGl~L~h~~al~a~~---~NSYkRl~~~~~ap~~~~~~W  366 (375)
                      |+.+ .+|||||+|+|||+..+       .++ +..+++||||| |+|+++++||+   +||||||+|++|||+  +++|
T Consensus       159 P~~~-~~GsG~HiH~Sl~~~~~n~~~~~~~~~lS~~~~~fiaGl-l~~~~~~~al~~PtvNSYkRl~~~~~aP~--~~~W  234 (368)
T d1f52a2         159 PMFG-DNGSGMHCHMSLAKNGTNLFSGDKYAGLSEQALYYIGGV-IKHAKAINALANPTTNSYKRLVPGYEAPV--MLAY  234 (368)
T ss_dssp             SSTT-SCCCCEEEEEEEEETTEETTBCSSGGGBCHHHHHHHHHH-HHTHHHHHHHHSCSGGGGGTSSSCSSCCC--EEEE
T ss_pred             cCCC-CCCcceeEEEEeccCCCcccccccccccCHHHHHHHHHH-HHhhHHHHHHHCCCchHHhhccCCCcCCc--eeee
Confidence            9999 49999999999998421       111 35678999999 99999999997   499999999999999  9999


Q ss_pred             ecCCCCCCC
Q 017214          367 VCSEDGPIF  375 (375)
Q Consensus       367 G~~NRsaa~  375 (375)
                      |.+||+++|
T Consensus       235 g~~NR~a~i  243 (368)
T d1f52a2         235 SARNRSASI  243 (368)
T ss_dssp             ESSCTTEEE
T ss_pred             ccCccccce
Confidence            999999975

PyMOL of d1f52a2

>d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1f52a1 d.15.9.1 (A:1-100) Glutamine synthetase, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d2bvca1 d.15.9.1 (A:5-104) Glutamine synthetase, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1r8ga_ d.128.1.3 (A:) Carboxylate-amine ligase YbdK {Escherichia coli [TaxId: 562]}	Back information, alignment and structure