Citrus Sinensis ID: 017224

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-----
MASTHAHQNLRPIAASGLTSHQLSTTRPVRLYFPPRSFKSRSIAVKTNQNLKWAVRLSLVDQSSPPQSTVDVEWLVGFLYDDLPHLFDDQGIDRTAYDEQVKFRDPITKHDTISGYLFNISMLKMVFRPAFQLHWVKQTGPYEITTRWTMVMKFMPLPWKPELVFTGTSVMGINPETGKFCSHLDLWDSIKNNDYFSLEGFLDVLKQLRIYKTPDLETPKYQILKRTANYEVRRYSPFIVVETNGDKLSGSTGFNDVAGYIFGKNSKTEKIPMTTPVFTQAYDNELKKVSIQIVLPQDKDMSSLPDPNQETLDLRKVEGGIAAVLKFSGKPTEDIVHEKEKELHTSLIRDGLRPKIGCLLARYNDPGQTWSFIMV
cccccccccccccccccccccccccccccccccccccccccHHHHHccccccHHHHHHcccccccccccccHHHHHHHHHHHcccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHccccEEEEEEEEccccEEEEEEEEEEEEEccccccEEEEEEEEEEEEcccccEEEEEcccccccccccccccccHHHHHHHcccccccccccccEEEEEEcccEEEEEEcccEEEEEEccccccccHHHHHHHHHcccccccccccccccEEEEEEcccccEEEEEEEEccccccccccccccccEEEEEEccEEEEEEEEcccccHHHHHHHHHHHHHHHHHccccccccEEEEEEcccccccccccc
cccHHHHHccccccccccccccccccEccccccccccccccEEEEccccccHHHHHHHHHHHcccccccHcHHHHHHHHHHHHHHHHHcccccHHHccccEEEccccccccccccHHHHHHHHHHHccccEEEEEEEcccccEEEEEEEEEEEEEEcccccEEEEEEEEEEEEccccccEccccccHHHHHccccccHHHHHHHHHHHccccccccccccEEEEEEcccEEEEEcccEEEEEEEcccHHHHHHHHHHHHHHHccccccccEEEcccEEEEcccccccEEEEEEEEccccccccccccccccEEEEEccccEEEEEEEcccccHHHHHHHHHHHHHHHHHccccccccEEEEEEccccccccEEEc
masthahqnlrpiaasgltshqlsttrpvrlyfpprsfksrsiAVKTNQNLKWAVRLSlvdqssppqstvdVEWLVGflyddlphlfddqgidrtaydeqvkfrdpitkhdtisgyLFNISMLKMVfrpafqlhwvkqtgpyeitTRWTMVMKfmplpwkpelvftgtsvmginpetgkfcshldlwdsiknndyfsLEGFLDVLKQLRIyktpdletpkyqilkrtanyevrryspfivvetngdklsgstgfndvagyifgknsktekipmttpvfTQAYDNELKKVSIQIvlpqdkdmsslpdpnqetldlRKVEGGIAAVLkfsgkptediVHEKEKELHTSLIRDGLRPKIGCLLaryndpgqtwsfimv
masthahqnlrpiaasgltshqlsttrpvrlyfpprsfksrsiavKTNQNLKWAVRLslvdqssppqSTVDVEWLVGFLYDDLPHLFDDQGIDRTAYDeqvkfrdpitkhdtISGYLFNISMLKMVFRPAFQLHWVKQTGPYEITTRWTMVMKFMPLPWKPELVFTGTSVMGINPETGKFCSHLDLWDSIKNNDYFSLEGFLDVLKQLRIYktpdletpkyqilkrtanyevrrysPFIVVEtngdklsgstgfNDVAGYIFgknsktekipmtTPVFTQAYDNELKKVSIQIVLpqdkdmsslpDPNQETLDLRKVEGGIAAVLkfsgkptedivHEKEKELHtslirdglrpKIGCLLaryndpgqtwsfimv
MASTHAHQNLRPIAASGLTSHQLSTTRPVRLYFPPRSFKSRSIAVKTNQNLKWAVRLSLVDQSSPPQSTVDVEWLVGFLYDDLPHLFDDQGIDRTAYDEQVKFRDPITKHDTISGYLFNISMLKMVFRPAFQLHWVKQTGPYEITTRWTMVMKFMPLPWKPELVFTGTSVMGINPETGKFCSHLDLWDSIKNNDYFSLEGFLDVLKQLRIYKTPDLETPKYQILKRTANYEVRRYSPFIVVETNGDKLSGSTGFNDVAGYIFGKNSKTEKIPMTTPVFTQAYDNELKKVSIQIVLPQDKDMSSLPDPNQETLDLRKVEGGIAAVLKFSGKPTEDIVHEKEKELHTSLIRDGLRPKIGCLLARYNDPGQTWSFIMV
****************************VRLYFPPRSFKSRSIAVKTNQNLKWAVRLSLVD*******TVDVEWLVGFLYDDLPHLFDDQGIDRTAYDEQVKFRDPITKHDTISGYLFNISMLKMVFRPAFQLHWVKQTGPYEITTRWTMVMKFMPLPWKPELVFTGTSVMGINPETGKFCSHLDLWDSIKNNDYFSLEGFLDVLKQLRIYKTPDLETPKYQILKRTANYEVRRYSPFIVVETNGDKLSGSTGFNDVAGYIFGKNSKTEKIPMTTPVFTQAYDNELKKVSIQIVL********************KVEGGIAAVLKFSGK***DIVH***KELHTSLIRDGLRPKIGCLLARYNDPGQTWSFI**
***************************************************************************VGFLYDDLPHLFDDQGIDRTAYDEQVKFRDPITKHDTISGYLFNISMLKMVFRPAFQLHWVKQTGPYEITTRWTMVMKFMPLPWKPELVFTGTSVMGINPETGKFCSHLDLWDSIKNNDYFSLEGFLDVLKQLRIYKTPDLETPKYQILKRTANYEVRRYSPFIVVETNGDKLSGSTGFNDVAGYIFGKNSKTEKIPMTTPVF*********KVSIQIVLPQDKD*****DPNQETLDLRKVEGGIAAVLKFSGKPTEDIVHEKEKELHTSLIRDGLRPKIGCLLARYNDPGQTWSFIMV
********NLRPIAASGLTSHQLSTTRPVRLYFPPRSFKSRSIAVKTNQNLKWAVRLSL********STVDVEWLVGFLYDDLPHLFDDQGIDRTAYDEQVKFRDPITKHDTISGYLFNISMLKMVFRPAFQLHWVKQTGPYEITTRWTMVMKFMPLPWKPELVFTGTSVMGINPETGKFCSHLDLWDSIKNNDYFSLEGFLDVLKQLRIYKTPDLETPKYQILKRTANYEVRRYSPFIVVETNGDKLSGSTGFNDVAGYIFGKNSKTEKIPMTTPVFTQAYDNELKKVSIQIVLPQDKDMSSLPDPNQETLDLRKVEGGIAAVLKFSGKPTEDIVHEKEKELHTSLIRDGLRPKIGCLLARYNDPGQTWSFIMV
******HQNLRPIAASGLTSHQLSTTRPVRLYFPPRSFKSRSIAVKTNQNLKWAVRLSLVDQSSPPQSTVDVEWLVGFLYDDLPHLFDDQGIDRTAYDEQVKFRDPITKHDTISGYLFNISMLKMVFRPAFQLHWVKQTGPYEITTRWTMVMKFMPLPWKPELVFTGTSVMGINPETGKFCSHLDLWDSIKNNDYFSLEGFLDVLKQLRIYKTPDLETPKYQILKRTANYEVRRYSPFIVVETNGDKLSGSTGFNDVAGYIFGKNSKTEKIPMTTPVFTQAYDNELKKVSIQIVLPQDKDMSSLPDPNQETLDLRKVEGGIAAVLKFSGKPTEDIVHEKEKELHTSLIRDGLRPKIGCLLARYNDPGQTWSFIMV
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASTHAHQNLRPIAASGLTSHQLSTTRPVRLYFPPRSFKSRSIAVKTNQNLKWAVRLSLVDQSSPPQSTVDVEWLVGFLYDDLPHLFDDQGIDRTAYDEQVKFRDPITKHDTISGYLFNISMLKMVFRPAFQLHWVKQTGPYEITTRWTMVMKFMPLPWKPELVFTGTSVMGINPETGKFCSHLDLWDSIKNNDYFSLEGFLDVLKQLRIYKTPDLETPKYQILKRTANYEVRRYSPFIVVETNGDKLSGSTGFNDVAGYIFGKNSKTEKIPMTTPVFTQAYDNELKKVSIQIVLPQDKDMSSLPDPNQETLDLRKVEGGIAAVLKFSGKPTEDIVHEKEKELHTSLIRDGLRPKIGCLLARYNDPGQTWSFIMV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query375 2.2.26 [Sep-21-2011]
Q9SR77309 Heme-binding-like protein no no 0.408 0.495 0.325 3e-13
>sp|Q9SR77|HBPL1_ARATH Heme-binding-like protein At3g10130, chloroplastic OS=Arabidopsis thaliana GN=At3g10130 PE=1 SV=1 Back     alignment and function desciption
 Score = 76.6 bits (187), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 93/178 (52%), Gaps = 25/178 (14%)

Query: 214 PDLETPKYQILKRTANYEVRRYSPFIVVET------NGDKLSGSTGFNDVAGYIFGKNSK 267
           PDLET  +++L RT  YE+R+  P+ V ET        D    S  FN +A Y+FGKN+ 
Sbjct: 112 PDLETMNFRVLFRTDKYEIRQVEPYFVAETIMPGETGFDSYGASKSFNVLAEYLFGKNTI 171

Query: 268 TEKIPMTTPVFTQAYDN--ELKKVSIQIVLPQDKDM--------------SSLPDPNQET 311
            EK+ MTTPV T+   +  E  +++  ++  + KD               S+LP P   +
Sbjct: 172 KEKMEMTTPVVTRKVQSVGEKMEMTTPVITSKAKDQNQWRMSFVMPSKYGSNLPLPKDPS 231

Query: 312 LDLRKVEGGIAAVLKFSGKPTEDIVHEKEKELHTSLIRDG---LRPKIGCLLARYNDP 366
           + +++V   I AV+ FSG  T++ +  +E+EL  +L  D    +R  +   +A+YN P
Sbjct: 232 VKIQQVPRKIVAVVAFSGYVTDEEIERRERELRRALQNDKKFRVRDGVSFEVAQYNPP 289

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query375
225445392390 PREDICTED: uncharacterized protein LOC10 0.994 0.956 0.755 1e-166
255576958381 protein with unknown function [Ricinus c 0.968 0.952 0.751 1e-162
356516943387 PREDICTED: uncharacterized protein LOC10 0.992 0.961 0.722 1e-155
357450683382 Heme-binding-like protein [Medicago trun 0.954 0.937 0.728 1e-154
449457221 1115 PREDICTED: uncharacterized protein LOC10 0.912 0.306 0.755 1e-154
388517553382 unknown [Medicago truncatula] 0.954 0.937 0.723 1e-153
449500263 496 PREDICTED: uncharacterized LOC101206063 0.912 0.689 0.755 1e-152
297738899317 unnamed protein product [Vitis vinifera] 0.8 0.946 0.836 1e-150
297812199380 soul heme-binding family protein [Arabid 0.968 0.955 0.697 1e-148
334187785395 SOUL heme-binding protein [Arabidopsis t 0.962 0.913 0.695 1e-147
>gi|225445392|ref|XP_002284984.1| PREDICTED: uncharacterized protein LOC100264696 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 285/377 (75%), Positives = 324/377 (85%), Gaps = 4/377 (1%)

Query: 1   MASTH-AHQNLRPIAASGLTSHQLSTTRPVRLYFPPRSF--KSRSIAVKTNQNLKWAVRL 57
           MASTH  HQ  RP     +   +L+T +P  +  PP  +   +RS+AV+T  +LKWA+RL
Sbjct: 1   MASTHLCHQISRPPQGRTVCFRRLTTAKPSGISLPPPKYVGNNRSLAVRTQTHLKWALRL 60

Query: 58  SLVDQSSPPQSTVDVEWLVGFLYDDLPHLFDDQGIDRTAYDEQVKFRDPITKHDTISGYL 117
           S+VDQS P  ST+D++ LV FLYDDLPHLFDDQGIDRTAYD+QVKFRDPITKHD+I GYL
Sbjct: 61  SIVDQSQP-TSTIDMKQLVNFLYDDLPHLFDDQGIDRTAYDDQVKFRDPITKHDSIGGYL 119

Query: 118 FNISMLKMVFRPAFQLHWVKQTGPYEITTRWTMVMKFMPLPWKPELVFTGTSVMGINPET 177
           FNI +LK +FRP FQLHWVKQTGPYEITTRWTMVM F+ LPWKPELVFTGTS+MG+NP T
Sbjct: 120 FNIGLLKNLFRPHFQLHWVKQTGPYEITTRWTMVMSFILLPWKPELVFTGTSIMGVNPAT 179

Query: 178 GKFCSHLDLWDSIKNNDYFSLEGFLDVLKQLRIYKTPDLETPKYQILKRTANYEVRRYSP 237
           GKFCSHLD WDS++ NDYFSLEG LDV+KQLRIYKTPDLETPKYQILKRTA+YEVR+YSP
Sbjct: 180 GKFCSHLDFWDSLQKNDYFSLEGLLDVIKQLRIYKTPDLETPKYQILKRTADYEVRKYSP 239

Query: 238 FIVVETNGDKLSGSTGFNDVAGYIFGKNSKTEKIPMTTPVFTQAYDNELKKVSIQIVLPQ 297
           FIVVET+GDKLSGSTGFNDVAGYIFGKNS  EKIPMTTPVFTQA+D +  KVSIQIVLP 
Sbjct: 240 FIVVETDGDKLSGSTGFNDVAGYIFGKNSTMEKIPMTTPVFTQAFDADKSKVSIQIVLPL 299

Query: 298 DKDMSSLPDPNQETLDLRKVEGGIAAVLKFSGKPTEDIVHEKEKELHTSLIRDGLRPKIG 357
           +K+MSSLPDPNQE + LRKVEGGIAAV KFSGKP +DIV EKEK L ++LIRDGL+PK+G
Sbjct: 300 EKEMSSLPDPNQEAISLRKVEGGIAAVSKFSGKPMDDIVQEKEKTLRSNLIRDGLKPKMG 359

Query: 358 CLLARYNDPGQTWSFIM 374
           CLLARYNDPG+TWS IM
Sbjct: 360 CLLARYNDPGRTWSSIM 376

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255576958|ref|XP_002529364.1| protein with unknown function [Ricinus communis] gi|223531184|gb|EEF33031.1| protein with unknown function [Ricinus communis] Back     alignment and taxonomy information
>gi|356516943|ref|XP_003527151.1| PREDICTED: uncharacterized protein LOC100789568 [Glycine max] Back     alignment and taxonomy information
>gi|357450683|ref|XP_003595618.1| Heme-binding-like protein [Medicago truncatula] gi|355484666|gb|AES65869.1| Heme-binding-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|449457221|ref|XP_004146347.1| PREDICTED: uncharacterized protein LOC101206063 [Cucumis sativus] Back     alignment and taxonomy information
>gi|388517553|gb|AFK46838.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|449500263|ref|XP_004161051.1| PREDICTED: uncharacterized LOC101206063 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297738899|emb|CBI28144.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297812199|ref|XP_002873983.1| soul heme-binding family protein [Arabidopsis lyrata subsp. lyrata] gi|297319820|gb|EFH50242.1| soul heme-binding family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|334187785|ref|NP_001190345.1| SOUL heme-binding protein [Arabidopsis thaliana] gi|332005417|gb|AED92800.1| SOUL heme-binding protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query375
TAIR|locus:2100043309 AT3G10130 "AT3G10130" [Arabido 0.365 0.443 0.339 1.3e-14
TAIR|locus:2065578225 SOUL-1 [Arabidopsis thaliana ( 0.266 0.444 0.378 5.2e-09
TAIR|locus:2020307232 HBP1 "AT1G17100" [Arabidopsis 0.346 0.560 0.314 7.7e-07
TAIR|locus:2032055219 AT1G78460 [Arabidopsis thalian 0.394 0.675 0.269 0.00034
TAIR|locus:2100043 AT3G10130 "AT3G10130" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 205 (77.2 bits), Expect = 1.3e-14, P = 1.3e-14
 Identities = 54/159 (33%), Positives = 85/159 (53%)

Query:   214 PDLETPKYQILKRTANYEVRRYSPFIVVET-----NG-DKLSGSTGFNDVAGYIFGKNSK 267
             PDLET  +++L RT  YE+R+  P+ V ET      G D    S  FN +A Y+FGKN+ 
Sbjct:   112 PDLETMNFRVLFRTDKYEIRQVEPYFVAETIMPGETGFDSYGASKSFNVLAEYLFGKNTI 171

Query:   268 TEKIPMTTPVFTQAYDN--ELKKVSIQIVLPQDKDM--------------SSLPDPNQET 311
              EK+ MTTPV T+   +  E  +++  ++  + KD               S+LP P   +
Sbjct:   172 KEKMEMTTPVVTRKVQSVGEKMEMTTPVITSKAKDQNQWRMSFVMPSKYGSNLPLPKDPS 231

Query:   312 LDLRKVEGGIAAVLKFSGKPTEDIVHEKEKELHTSLIRD 350
             + +++V   I AV+ FSG  T++ +  +E+EL  +L  D
Sbjct:   232 VKIQQVPRKIVAVVAFSGYVTDEEIERRERELRRALQND 270
GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0010287 "plastoglobule" evidence=IDA
TAIR|locus:2065578 SOUL-1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020307 HBP1 "AT1G17100" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032055 AT1G78460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00016829001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (390 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query375
pfam04832174 pfam04832, SOUL, SOUL heme-binding protein 4e-49
pfam10184113 pfam10184, DUF2358, Uncharacterized conserved prot 2e-35
>gnl|CDD|218284 pfam04832, SOUL, SOUL heme-binding protein Back     alignment and domain information 
 Score =  163 bits (414), Expect = 4e-49
 Identities = 63/161 (39%), Positives = 84/161 (52%), Gaps = 9/161 (5%)

Query: 215 DLETPKYQILKRTANYEVRRYSPFIVVETNGDKLS----GSTGFNDVAGYIFGKNSKTEK 270
            +ETP Y +L+R  +YE+RRY P +  ET  D  S       GF  +AGYIFGKN   EK
Sbjct: 1   AVETPPYTVLEREGDYEIRRYEPMVWAETEVDAGSRDEASGEGFRRLAGYIFGKNRSGEK 60

Query: 271 IPMTTPVFTQAYDNEL-----KKVSIQIVLPQDKDMSSLPDPNQETLDLRKVEGGIAAVL 325
           I MT PV  QA             ++  V+P      +LP P    + +R+V     AV+
Sbjct: 61  IAMTAPVLQQAIPMTADEEGSGAWTVSFVMPSGYQAETLPAPLDPDVRIREVPARTVAVI 120

Query: 326 KFSGKPTEDIVHEKEKELHTSLIRDGLRPKIGCLLARYNDP 366
           +FSG+ +E+ V EK  EL   L  DGL+P+    LA YN P
Sbjct: 121 RFSGRASEEDVAEKAAELRAWLEADGLKPRGEPFLAGYNPP 161

This family represents a group of putative heme-binding proteins. Our family includes archaeal and bacterial homologues. Length = 174
>gnl|CDD|220621 pfam10184, DUF2358, Uncharacterized conserved protein (DUF2358) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 375
PF04832176 SOUL: SOUL heme-binding protein; InterPro: IPR0069 100.0
PF10184113 DUF2358: Uncharacterized conserved protein (DUF235 99.94
KOG4457202 consensus Uncharacterized conserved protein [Funct 99.3
TIGR02096129 conserved hypothetical protein, steroid delta-isom 99.29
PF07366126 SnoaL: SnoaL-like polyketide cyclase; InterPro: IP 99.11
cd00781122 ketosteroid_isomerase ketosteroid isomerase: Many 99.06
PF12680102 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8 98.88
PF07858125 LEH: Limonene-1,2-epoxide hydrolase catalytic doma 97.94
TIGR02960324 SigX5 RNA polymerase sigma-70 factor, TIGR02960 fa 97.26
PRK08241339 RNA polymerase factor sigma-70; Validated 97.17
COG4319137 Ketosteroid isomerase homolog [Function unknown] 95.87
TIGR02246128 conserved hypothetical protein. This family consis 95.78
cd00531124 NTF2_like Nuclear transport factor 2 (NTF2-like) s 95.64
COG3631133 Ketosteroid isomerase-related protein [General fun 95.01
KOG2546 483 consensus Abl interactor ABI-1, contains SH3 domai 94.47
PF13474121 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE 94.27
PRK10016156 DNA gyrase inhibitor; Provisional 94.18
COG3449154 DNA gyrase inhibitor [DNA replication, recombinati 93.08
PF14534107 DUF4440: Domain of unknown function (DUF4440); PDB 91.29
COG4308130 LimA Limonene-1,2-epoxide hydrolase [Secondary met 90.55
PF06445155 GyrI-like: GyrI-like small molecule binding domain 90.09
PRK10016156 DNA gyrase inhibitor; Provisional 89.84
COG5485131 Predicted ester cyclase [General function predicti 89.01
COG3449154 DNA gyrase inhibitor [DNA replication, recombinati 87.91
PF03284162 PHZA_PHZB: Phenazine biosynthesis protein A/B; Int 85.03
PF13577127 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RF 80.4
>PF04832 SOUL: SOUL heme-binding protein; InterPro: IPR006917 This family represents a group of putative haem-binding proteins [] Back     alignment and domain information 
Probab=100.00  E-value=3e-44  Score=325.10  Aligned_cols=159  Identities=35%  Similarity=0.562  Sum_probs=126.8

Q ss_pred             CCCCCceeEeeecCCeEEEEeCCceEEEeccC----CcccchhhHHhhhcccCCCCCCCCCCCCCceEEEeecC---CC-
Q 017224          215 DLETPKYQILKRTANYEVRRYSPFIVVETNGD----KLSGSTGFNDVAGYIFGKNSKTEKIPMTTPVFTQAYDN---EL-  286 (375)
Q Consensus       215 ~~E~P~Y~Vl~~~~~yEiR~Y~~~~wv~t~~~----~~A~~~gF~~L~~YI~G~N~~~~kI~MT~PV~~~~~~~---~~-  286 (375)
                      ++|||+|+|+++.++||||+|++++||||+..    +.|+..||++|++||+|+|+++++|+||+||++++.+.   .| 
T Consensus         1 ~~E~P~Y~v~~~~~~~EiR~Y~~~~w~~t~~~~~~~~~a~~~~f~~L~~Yi~G~N~~~~ki~mT~PV~~~~~~~~~~~~~   80 (176)
T PF04832_consen    1 DIECPPYEVLKKGDDYEIRRYPPAKWASTTVSGCSFEEASSSGFRRLFRYIFGKNSAGEKIAMTAPVLTQVIPMTAESCE   80 (176)
T ss_dssp             --BS-SEEEECCCSSCEEEEE--CEEEEEEEECS-HHHHHHHHHHHHHHHHCT-CTT------BS-EEEEEEETTTTTCE
T ss_pred             CCcCCCeEEEEeCCCEEEEEECCceEEEEEecCCChhHHHHHHHHHHHHHHhcCCcccceeeccCCEEEEEEcCCCcccC
Confidence            47999999999999999999999999999976    34788999999999999999999999999999998421   23 


Q ss_pred             cEEEEEEEecCCCCCCCCCCCCCCCeeEEEeCCeEEEEEEecCcCChhHHHHHHHHHHHHHHhCCCCccCcEEEEEEcCC
Q 017224          287 KKVSIQIVLPQDKDMSSLPDPNQETLDLRKVEGGIAAVLKFSGKPTEDIVHEKEKELHTSLIRDGLRPKIGCLLARYNDP  366 (375)
Q Consensus       287 ~~~tmsF~lP~~~q~~~~P~P~d~~V~i~~~p~~~vaV~~F~G~~te~~~~~~~~~L~~~L~~~G~~~~~~~~~A~Yd~P  366 (375)
                      +.++|||+||+++|.++||+|+|++|+|++.|+.++||++|+|+++++++.+++++|+++|+++|+...+.+++|+||+|
T Consensus        81 ~~~t~~f~lP~~~~~~~~P~P~d~~V~i~~~p~~~~~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~a~Yd~P  160 (176)
T PF04832_consen   81 KEYTMSFFLPSEYQAENPPKPTDPDVFIEEVPERTVYVRRFSGFATDEKIQEEAKKLRAALKKDGLKDKGYYYVAGYDPP  160 (176)
T ss_dssp             CEEEEEEE--HHHC-TS---BSSTTEEEEEC-SEEEEEEEECS--SHHHHHHHHHHHHHHCCCTTHHCCCEEEEEESSSS
T ss_pred             CcEEEEEEcCcccccccCCCCCCCeEEEEEecCcEEEEEEECCcCCHHHHHHHHHHHHHHHHHcCCCcCCCeEEEEcCCC
Confidence            78999999999999899999999999999999999999999999999999999999999999999996678999999999


Q ss_pred             CCCccccc
Q 017224          367 GQTWSFIM  374 (375)
Q Consensus       367 ~~tp~fl~  374 (375)
                       |+++|.|
T Consensus       161 -~~~~~~R  167 (176)
T PF04832_consen  161 -FTPPFNR  167 (176)
T ss_dssp             --SSSSSS
T ss_pred             -CCCccCc
Confidence             9999987

It includes archaeal and bacterial homologues.; PDB: 2HVA_A 2GOV_A 4A1M_A 3R85_E 2YC9_A 3R8K_B 3R8J_B.
>PF10184 DUF2358: Uncharacterized conserved protein (DUF2358); InterPro: IPR018790 This entry represents a family of conserved proteins Back     alignment and domain information
>KOG4457 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR02096 conserved hypothetical protein, steroid delta-isomerase-related Back     alignment and domain information
>PF07366 SnoaL: SnoaL-like polyketide cyclase; InterPro: IPR009959 This domain is found in SnoaL [] a polyketide cyclase involved in nogalamycin biosynthesis Back     alignment and domain information
>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon Back     alignment and domain information
>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A Back     alignment and domain information
>PF07858 LEH: Limonene-1,2-epoxide hydrolase catalytic domain; InterPro: IPR013100 Epoxide hydrolases catalyse the hydrolysis of epoxides to corresponding diols, which is important in detoxification, synthesis of signal molecules, or metabolism Back     alignment and domain information
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family Back     alignment and domain information
>PRK08241 RNA polymerase factor sigma-70; Validated Back     alignment and domain information
>COG4319 Ketosteroid isomerase homolog [Function unknown] Back     alignment and domain information
>TIGR02246 conserved hypothetical protein Back     alignment and domain information
>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily Back     alignment and domain information
>COG3631 Ketosteroid isomerase-related protein [General function prediction only] Back     alignment and domain information
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B Back     alignment and domain information
>PRK10016 DNA gyrase inhibitor; Provisional Back     alignment and domain information
>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair] Back     alignment and domain information
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A Back     alignment and domain information
>COG4308 LimA Limonene-1,2-epoxide hydrolase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF06445 GyrI-like: GyrI-like small molecule binding domain; InterPro: IPR010499 This domain is found in the probable effector binding domain of a number of different bacterial transcription activators [] and is also present in some DNA gyrase inhibitors Back     alignment and domain information
>PRK10016 DNA gyrase inhibitor; Provisional Back     alignment and domain information
>COG5485 Predicted ester cyclase [General function prediction only] Back     alignment and domain information
>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair] Back     alignment and domain information
>PF03284 PHZA_PHZB: Phenazine biosynthesis protein A/B; InterPro: IPR004964 The phenazine biosynthesis proteins A and B are involved in the biosynthesis of this antibiotic Back     alignment and domain information
>PF13577 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RFR_A 3B8L_F 2CHC_A 3A76_A 3EF8_B Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query375
3r8j_A212 Heme-binding protein 2; HEBP family, SOUL protein, 2e-27
2gov_A195 P22HBP, heme-binding protein 1; structural genomic 4e-27
4b0y_A227 Heme-binding protein 2; apoptosis; 3.50A {Homo sap 2e-26
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 3r85_E Length = 212 Back     alignment and structure
 Score =  106 bits (266), Expect = 2e-27
 Identities = 41/173 (23%), Positives = 63/173 (36%), Gaps = 17/173 (9%)

Query: 215 DLETPKYQIL----KRTANYEVRRYSPFIVVETN----GDKLSGSTGFNDVAGYIFGKNS 266
            +ETP ++       +  +YE+R Y P   V T+        +  TGF  +  YI GKN 
Sbjct: 22  AVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESMDWDSAIQTGFTKLNSYIQGKNE 81

Query: 267 KTEKIPMTTPVFTQAYDNE----LKKVSIQIVLPQDKDMSSLPDPNQETLDLRKVEGGIA 322
           K  KI MT PV +             ++I + +P  +     P P +  + +        
Sbjct: 82  KEMKIKMTAPVTSYVEPGSGPFSESTITISLYIPS-EQQFDPPRPLESDVFIEDRAEMTV 140

Query: 323 AVLKFSGKPTEDIVHEKEKELHTSLIRDGLRPKIGC-LLARYNDPGQTWSFIM 374
            V  F G  +     E+   L + L  DG          A YN P      + 
Sbjct: 141 FVRSFDGFSSAQKNQEQLLTLASILREDGKVFDEKVYYTAGYNSP---VKLLN 190
>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; NMR {Mus musculus} SCOP: d.60.1.4 PDB: 4a1m_A 2hva_A Length = 195 Back     alignment and structure
>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens} Length = 227 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query375
4b0y_A227 Heme-binding protein 2; apoptosis; 3.50A {Homo sap 100.0
2gov_A195 P22HBP, heme-binding protein 1; structural genomic 100.0
3r8j_A212 Heme-binding protein 2; HEBP family, SOUL protein, 100.0
4h3u_A158 Hypothetical protein; structural genomics, PSI-bio 99.48
3rga_A283 Epoxide hydrolase; NTF2-like, epoxide-opening cycl 99.45
3dxo_A121 Uncharacterized snoal-like protein; putative isome 99.44
3rga_A283 Epoxide hydrolase; NTF2-like, epoxide-opening cycl 99.36
3kkg_A146 Putative snoal-like polyketide cyclase; structural 99.35
3f9s_A146 Putative polyketide cyclase; structural genomics, 99.35
2a15_A139 Hypothetical protein RV0760C; beta-alpha-barrel, s 99.34
2gex_A152 SNOL; alpha+beta barrel, oxidoreductase; 2.50A {St 99.33
2f99_A153 Aklanonic acid methyl ester cyclase, AKNH; anthrac 99.32
3ehc_A128 Snoal-like polyketide cyclase; structural genomics 99.31
2gey_A158 ACLR protein; alpha+beta barrel, oxidoreductase; H 99.31
3k0z_A159 Putative polyketide cyclase; structural genomics, 99.3
3hk4_A136 MLR7391 protein; NTF2-like protein, structural gen 99.3
3fh1_A129 Uncharacterized NTF2-like protein; structural geno 99.28
1sjw_A144 Nogalonic acid methyl ester cyclase; anthracycline 99.23
3i0y_A140 Putative polyketide cyclase; cystatin-like fold, s 99.2
3f7x_A151 Putative polyketide cyclase; structural genomics, 99.13
3mso_A143 Steroid delta-isomerase; structural genomics, join 99.1
1oh0_A131 Steroid delta-isomerase; ketosteroid isomerase, KS 99.08
3ebt_A132 Uncharacterized NTF2-like protein; structural geno 99.08
1ohp_A125 Steroid delta-isomerase; inhibitor; HET: ESR; 1.53 99.08
3dm8_A143 Uncharacterized protein RPA4348; siras, putative i 99.08
3f8h_A150 Putative polyketide cyclase; structural genomics, 99.08
3ec9_A140 Uncharacterized NTF2-like protein; structural geno 99.06
1z1s_A163 Hypothetical protein PA3332; beta barrel, conserve 99.02
1nww_A149 Limonene-1,2-epoxide hydrolase; HET: MES; 1.20A {R 99.02
3fgy_A135 Uncharacterized NTF2-like protein; structural geno 98.98
3f8x_A148 Putative delta-5-3-ketosteroid isomerase; structur 98.97
1s5a_A150 Hypothetical protein YESE; structural genomics, PS 98.94
3er7_A131 Uncharacterized NTF2-like protein; YP_001812677.1, 98.91
3g8z_A148 Protein of unknown function with cystatin-like FO; 98.89
3g16_A156 Uncharacterized protein with cystatin-like fold; Y 98.86
3h3h_A122 Uncharacterized snoal-like protein; structural gen 98.84
3grd_A134 Uncharacterized NTF2-superfamily protein; NP_97724 98.83
2bng_A149 MB2760; epoxide hydrolase, limonene, hydrolase, st 98.78
1tuh_A156 BAL32A, hypothetical protein EGC068; unknown funct 98.75
2k54_A123 Protein ATU0742; protein of unknown function, stru 98.74
3jum_A185 Phenazine biosynthesis protein A/B; chirality, dru 98.64
3g0k_A148 Putative membrane protein; snoal-like polyketide c 98.63
3hx8_A129 MLR2180 protein, putative ketosteroid isomerase; s 98.55
3dmc_A134 NTF2-like protein; structural genomics, joint cent 98.47
3f14_A112 Uncharacterized NTF2-like protein; YP_680363.1, NT 98.35
3en8_A128 Uncharacterized NTF-2 like protein; YP_553245.1, N 98.31
3ff0_A163 Phenazine biosynthesis protein PHZB 2; cystatin-li 98.3
3ff2_A117 Uncharacterized cystatin fold protein (YP_497570. 98.17
3flj_A155 Uncharacterized protein conserved in bacteria WIT 98.16
3d9r_A135 Ketosteroid isomerase-like protein; YP_049581.1, s 97.7
3ke7_A134 Putative ketosteroid isomerase; structural genomic 97.65
3f40_A114 Uncharacterized NTF2-like protein; YP_677363.1, NT 97.62
3rob_A139 Uncharacterized conserved protein; structural geno 97.59
3gzb_A154 Putative snoal-like polyketide cyclase; YP_0011826 97.58
3h51_A156 Putative calcium/calmodulin dependent protein KIN 97.5
3e0h_A158 Uncharacterized protein; chlorobium tepidum, struc 97.21
1jyh_A157 DNA gyrase inhibitory protein; structural genomics 97.02
3bb9_A148 Putative orphan protein; structural genomics, join 96.23
3f7s_A142 Uncharacterized NTF2-like protein; structural geno 96.06
3lyg_A120 NTF2-like protein of unknown function; structural 95.97
2gxf_A142 Hypothetical protein YYBH; alpha-beta protein., st 95.94
3cu3_A172 Domain of unknown function with A cystatin-like F; 95.61
3gwr_A144 Putative calcium/calmodulin-dependent protein KIN 95.51
2ux0_A143 Calcium-calmodulin dependent protein kinase (CAM I 95.45
1r8e_A278 Multidrug-efflux transporter regulator; protein-DN 95.26
1tp6_A128 Hypothetical protein PA1314; structural genomics, 95.11
3b49_A211 LIN2189 protein; BIG 860.1, structural genomics, M 93.34
2chc_A170 Protein RV3472; hypothetical protein; 1.69A {Mycob 93.32
3b7c_A122 Uncharacterized protein; NTF-2 like protein, struc 92.69
3gzr_A146 Uncharacterized protein with A NTF2-like fold; str 92.02
2r4i_A123 Uncharacterized protein; NTF2-like protein, struct 91.39
4i4k_A143 Uncharacterized protein SGCJ; structural genomics, 90.69
2rfr_A155 Uncharacterized protein; structural genomics, join 90.6
3ef8_A150 Putative scyalone dehydratase; YP_496742.1, struct 90.1
3b8l_A163 Uncharacterized protein; putative aromatic ring hy 89.96
3a76_A176 Gamma-hexachlorocyclohexane dehydrochlorinase; bar 89.34
2rgq_A144 Domain of unknown function with A cystatin-like F; 87.16
3fsd_A134 NTF2-like protein of unknown function in nutrient; 87.09
3ecf_A130 NTF2-like protein; structural genomics, joint cent 83.88
3soy_A145 NTF2-like superfamily protein; structural genomics 83.88
2f86_B143 Hypothetical protein K11E8.1D; UNC-43, oligomeriza 82.16
>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=3e-44  Score=335.81  Aligned_cols=167  Identities=25%  Similarity=0.316  Sum_probs=142.5

Q ss_pred             HhhhhcccCCCCCCCceeEeee----cCCeEEEEeCCceEEEeccCC----cccchhhHHhhhcccCCCCCCCCCCCCCc
Q 017224          205 LKQLRIYKTPDLETPKYQILKR----TANYEVRRYSPFIVVETNGDK----LSGSTGFNDVAGYIFGKNSKTEKIPMTTP  276 (375)
Q Consensus       205 l~Ql~~~~~~~~E~P~Y~Vl~~----~~~yEiR~Y~~~~wv~t~~~~----~A~~~gF~~L~~YI~G~N~~~~kI~MT~P  276 (375)
                      ..+.....+.++|||+|+||++    .++||||+|++++||+|++.+    .|...||++|++||+|+|.+++||+||+|
T Consensus        31 ~~~~~~~~~~~~E~P~Y~vl~~~~~~~~~yEiR~Y~~~~wast~v~~~~~~~A~~~gF~~L~~YI~G~N~~~~kI~MTaP  110 (227)
T 4b0y_A           31 PGAAEDAAAQAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAP  110 (227)
T ss_dssp             ----------CCBCCCEECCC------CCSEEEEECCEEEEEEEEEESCHHHHHHHHHHHHHHHHHTCBTTCCCCCCBSC
T ss_pred             cccccccccCCCCCCCeEEEEecccCCCCEEEEEcCCceEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCCCccccccC
Confidence            3444455578999999999999    889999999999999999764    37889999999999999999999999999


Q ss_pred             eEEEeecCC----CcEEEEEEEecCCCCCCCCCCCCCCCeeEEEeCCeEEEEEEecCcCChhHHHHHHHHHHHHHHhCCC
Q 017224          277 VFTQAYDNE----LKKVSIQIVLPQDKDMSSLPDPNQETLDLRKVEGGIAAVLKFSGKPTEDIVHEKEKELHTSLIRDGL  352 (375)
Q Consensus       277 V~~~~~~~~----~~~~tmsF~lP~~~q~~~~P~P~d~~V~i~~~p~~~vaV~~F~G~~te~~~~~~~~~L~~~L~~~G~  352 (375)
                      |++++.+++    .+.++|+|+||+++| ++||+|+|++|+|+++|+++|||++|+|+++++++.+++++|+++|+++|+
T Consensus       111 V~t~~~p~~~~~~~~~~tvsF~lP~~~q-~~pP~P~D~~V~i~~~p~~~vaVr~FsG~~~~~~~~~~~~~L~~~L~~~g~  189 (227)
T 4b0y_A          111 VTSYVEPGSGPFSESTITISLYIPSEQQ-FDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILREDGK  189 (227)
T ss_dssp             EEEEEECCC--CCCEEEEEEEECCGGGS-SSCCCBSSSSEEEEEECCEEEEEEEESSCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEEEecCCCcccCceEEEEEEcChhhc-cCCCCCCCCceEEEEeCCEEEEEEEecCcCCHHHHHHHHHHHHHHHHhCCC
Confidence            999987643    268999999999999 899999999999999999999999999999999999999999999999999


Q ss_pred             CccCc-EEEEEEcCCCCCccccc
Q 017224          353 RPKIG-CLLARYNDPGQTWSFIM  374 (375)
Q Consensus       353 ~~~~~-~~~A~Yd~P~~tp~fl~  374 (375)
                      .+.+. |++|+||+| |+| |+|
T Consensus       190 ~~~~~~y~~A~Yd~P-~t~-~~R  210 (227)
T 4b0y_A          190 VFDEKVYYTAGYNSP-VKL-LNR  210 (227)
T ss_dssp             CBCSSCEEEEECC----CC-CSS
T ss_pred             ccCCCcEEEEEeCCC-CCc-CCc
Confidence            99875 699999999 887 877
>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; NMR {Mus musculus} SCOP: d.60.1.4 PDB: 4a1m_A 2hva_A Back     alignment and structure
>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 4ayz_A 4ayz_B 3r85_E Back     alignment and structure
>4h3u_A Hypothetical protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.15A {Catenulispora acidiphila} Back     alignment and structure
>3rga_A Epoxide hydrolase; NTF2-like, epoxide-opening cyclic ether formation, isomerase; HET: LSB ILD; 1.59A {Streptomyces lasaliensis} Back     alignment and structure
>3dxo_A Uncharacterized snoal-like protein; putative isomerase of the snoal-like family; HET: MSE PGE; 2.70A {Agrobacterium tumefaciens str} SCOP: d.17.4.19 Back     alignment and structure
>3rga_A Epoxide hydrolase; NTF2-like, epoxide-opening cyclic ether formation, isomerase; HET: LSB ILD; 1.59A {Streptomyces lasaliensis} Back     alignment and structure
>3kkg_A Putative snoal-like polyketide cyclase; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, lyase; HET: MSE PGE; 1.40A {Jannaschia SP} Back     alignment and structure
>3f9s_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative; 1.76A {Acidithiobacillus ferrooxidans atcc 23} Back     alignment and structure
>2a15_A Hypothetical protein RV0760C; beta-alpha-barrel, structural genomics, PSI, protein structure initiative; 1.68A {Mycobacterium tuberculosis} SCOP: d.17.4.3 PDB: 2z76_A* 2z77_A* 2z7a_A Back     alignment and structure
>2gex_A SNOL; alpha+beta barrel, oxidoreductase; 2.50A {Streptomyces nogalater} SCOP: d.17.4.9 Back     alignment and structure
>2f99_A Aklanonic acid methyl ester cyclase, AKNH; anthracycline,polyketide cyclase,stereoselectivity, aklavino biosynthetic protein; HET: AKV; 1.90A {Streptomyces galilaeus} SCOP: d.17.4.9 PDB: 2f98_A* Back     alignment and structure
>3ehc_A Snoal-like polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.12A {Agrobacterium tumefaciens str} Back     alignment and structure
>2gey_A ACLR protein; alpha+beta barrel, oxidoreductase; HET: PG4; 1.80A {Streptomyces galilaeus} SCOP: d.17.4.9 Back     alignment and structure
>3k0z_A Putative polyketide cyclase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS lipoprotein; HET: NHE; 1.91A {Bacillus cereus} Back     alignment and structure
>3hk4_A MLR7391 protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, lyase; HET: MSE; 1.96A {Mesorhizobium loti} Back     alignment and structure
>3fh1_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Mesorhizobium loti} Back     alignment and structure
>1sjw_A Nogalonic acid methyl ester cyclase; anthracyclines, nogalamycin, snoal, aldol condensation, LYAS structural genomics; HET: NGV; 1.35A {Streptomyces nogalater} SCOP: d.17.4.9 Back     alignment and structure
>3i0y_A Putative polyketide cyclase; cystatin-like fold, structural genomics, joint center for ST genomics, JCSG, protein structure initiative; HET: MSE UNL; 1.50A {Xanthomonas campestris PV} Back     alignment and structure
>3f7x_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL; 1.24A {Pseudomonas putida KT2440} Back     alignment and structure
>3mso_A Steroid delta-isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.57A {Pseudomonas aeruginosa} Back     alignment and structure
>1oh0_A Steroid delta-isomerase; ketosteroid isomerase, KSI, equilenin, PI, LBHB; HET: EQU; 1.1A {Pseudomonas putida} SCOP: d.17.4.3 PDB: 1e3v_A* 1opy_A 1dmq_A 1dmm_A 1ea2_A 3cpo_A 1e3r_A* 1ogx_A 2inx_A 2pzv_A 1c7h_A 1dmn_A 1k41_A 1oho_A* 3fzw_A* 1cqs_A* 1w00_A 1e97_A 1w6y_A* 3ipt_A* ... Back     alignment and structure
>3ebt_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; 1.30A {Burkholderia pseudomallei K96243} SCOP: d.17.4.9 Back     alignment and structure
>1ohp_A Steroid delta-isomerase; inhibitor; HET: ESR; 1.53A {Pseudomonas testosteroni} SCOP: d.17.4.3 PDB: 1qjg_A* 8cho_A* 1ohs_A* 1ocv_A 1isk_A 3nuv_A* 1ogz_A* 3nhx_A* 3m8c_A* 3nxj_A* 3myt_A* 3mki_A 3mhe_A 1buq_A* 3nbr_A* 3t8u_A 3ov4_A* 3nm2_A Back     alignment and structure
>3dm8_A Uncharacterized protein RPA4348; siras, putative isomerase, structural genomics, PSI-2, prote structure initiative; HET: CE9; 1.80A {Rhodopseudomonas palustris} SCOP: d.17.4.20 Back     alignment and structure
>3f8h_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Silicibacter SP} Back     alignment and structure
>3ec9_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.60A {Burkholderia thailandensis E264} SCOP: d.17.4.10 Back     alignment and structure
>1z1s_A Hypothetical protein PA3332; beta barrel, conserved hypothetical protein, structural genomics, PSI, protein structure initiative; HET: PGE; 1.49A {Pseudomonas aeruginosa PAO1} SCOP: d.17.4.10 Back     alignment and structure
>1nww_A Limonene-1,2-epoxide hydrolase; HET: MES; 1.20A {Rhodococcus erythropolis} SCOP: d.17.4.8 PDB: 1nu3_A* Back     alignment and structure
>3fgy_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.59A {Burkholderia xenovorans LB400} SCOP: d.17.4.0 Back     alignment and structure
>3f8x_A Putative delta-5-3-ketosteroid isomerase; structural genomics, joint center for structural genomics; HET: MSE; 1.55A {Pectobacterium atrosepticum SCRI1043} Back     alignment and structure
>1s5a_A Hypothetical protein YESE; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 1.70A {Bacillus subtilis} SCOP: d.17.4.10 Back     alignment and structure
>3er7_A Uncharacterized NTF2-like protein; YP_001812677.1, NTF2-like protein of unknown function, struc genomics; HET: MSE; 1.50A {Exiguobacterium sibiricum 255-15} SCOP: d.17.4.24 Back     alignment and structure
>3g8z_A Protein of unknown function with cystatin-like FO; NP_639274.1, snoal-like polyketide cyclase; HET: MSE; 1.90A {Xanthomonas campestris PV} Back     alignment and structure
>3g16_A Uncharacterized protein with cystatin-like fold; YP_001022489.1, protein of unknown function with cystatin-LI structural genomics; HET: MSE; 1.45A {Methylibium petroleiphilum PM1} Back     alignment and structure
>3h3h_A Uncharacterized snoal-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE UNL MES; 1.60A {Burkholderia thailandensis E264} Back     alignment and structure
>3grd_A Uncharacterized NTF2-superfamily protein; NP_977240.1, NTF2-superfamily protein with unknown function, structural genomics; HET: MSE; 1.25A {Bacillus cereus atcc 10987} SCOP: d.17.4.0 Back     alignment and structure
>2bng_A MB2760; epoxide hydrolase, limonene, hydrolase, structural proteomics in europe, spine, structural genomics; 2.5A {Mycobacterium tuberculosis} SCOP: d.17.4.8 Back     alignment and structure
>1tuh_A BAL32A, hypothetical protein EGC068; unknown function; 1.85A {Uncultured bacterium} SCOP: d.17.4.11 Back     alignment and structure
>2k54_A Protein ATU0742; protein of unknown function, structural genomics, PSI-2, Pro structure initiative; NMR {Agrobacterium tumefaciens str} SCOP: d.17.4.29 Back     alignment and structure
>3jum_A Phenazine biosynthesis protein A/B; chirality, drug design, medicinal CH inhibitor, biosynthetic protein; HET: AOD; 1.45A {Burkholderia SP} PDB: 3b4o_A* 3b4p_A* 3dzl_A* 3ex9_A 3cnm_A* 3jun_A* 3juo_A* 3jup_A* 3juq_A* Back     alignment and structure
>3g0k_A Putative membrane protein; snoal-like polyketide cyclase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.30A {Novosphingobium aromaticivorans} Back     alignment and structure
>3hx8_A MLR2180 protein, putative ketosteroid isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL PG4; 1.45A {Mesorhizobium loti} Back     alignment and structure
>3dmc_A NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, unknow function; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.17.4.10 Back     alignment and structure
>3f14_A Uncharacterized NTF2-like protein; YP_680363.1, NTF2-like protein of unknown function, structur genomics; HET: MSE TRS PGE; 1.45A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>3en8_A Uncharacterized NTF-2 like protein; YP_553245.1, NTF-2 like protein of unknown function, structu genomics; HET: MSE PG4; 1.85A {Burkholderia xenovorans LB400} SCOP: d.17.4.20 Back     alignment and structure
>3ff0_A Phenazine biosynthesis protein PHZB 2; cystatin-like fold, antibiotic biosynthesis, virulence, STRU genomics; 1.90A {Pseudomonas aeruginosa} Back     alignment and structure
>3ff2_A Uncharacterized cystatin fold protein (YP_497570. NTF2 superfamily; structural genomics; 1.90A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID} Back     alignment and structure
>3flj_A Uncharacterized protein conserved in bacteria WIT cystatin-like fold; YP_168589.1; HET: MSE; 2.00A {Silicibacter pomeroyi dss-3} Back     alignment and structure
>3d9r_A Ketosteroid isomerase-like protein; YP_049581.1, structural joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 2.40A {Pectobacterium atrosepticum} SCOP: d.17.4.27 Back     alignment and structure
>3ke7_A Putative ketosteroid isomerase; structural genomics, joint C structural genomics, JCSG, protein structure initiative; HET: MSE BCN; 1.45A {Parabacteroides distasonis atcc 8503} Back     alignment and structure
>3f40_A Uncharacterized NTF2-like protein; YP_677363.1, NTF2-like protein of unknown function, structural genomics; HET: MSE; 1.27A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>3rob_A Uncharacterized conserved protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.48A {Planctomyces limnophilus} Back     alignment and structure
>3gzb_A Putative snoal-like polyketide cyclase; YP_001182657.1, STRU genomics, joint center for structural genomics, JCSG; HET: MSE; 1.44A {Shewanella putrefaciens} PDB: 3lza_A* Back     alignment and structure
>3h51_A Putative calcium/calmodulin dependent protein KIN association domain; NP_636218.1; HET: MSE PG4; 1.70A {Xanthomonas campestris PV} Back     alignment and structure
>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A Back     alignment and structure
>1jyh_A DNA gyrase inhibitory protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: DNA; 1.80A {Escherichia coli} SCOP: d.60.1.3 Back     alignment and structure
>3bb9_A Putative orphan protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: d.17.4.16 Back     alignment and structure
>3f7s_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Pseudomonas putida KT2440} Back     alignment and structure
>3lyg_A NTF2-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE GOL; 1.61A {Colwellia psychrerythraea} Back     alignment and structure
>2gxf_A Hypothetical protein YYBH; alpha-beta protein., structural genomics, PSI, protein structure initiative; HET: MES; 3.10A {Bacillus subtilis} SCOP: d.17.4.22 Back     alignment and structure
>3cu3_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; 2.00A {Nostoc punctiforme} SCOP: d.17.4.28 Back     alignment and structure
>3gwr_A Putative calcium/calmodulin-dependent protein KIN II association domain; YP_315894.1; HET: MSE PG4; 2.01A {Thiobacillus denitrificans atcc 25259} Back     alignment and structure
>2ux0_A Calcium-calmodulin dependent protein kinase (CAM II gamma; transferase, oligomerisation DOM serine- threonine kinase, ATP-binding; 2.46A {Homo sapiens} SCOP: d.17.4.7 PDB: 2w2c_A 1hkx_A* Back     alignment and structure
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A* Back     alignment and structure
>1tp6_A Hypothetical protein PA1314; structural genomics, alpha-beta sandwich, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: d.17.4.12 Back     alignment and structure
>3b49_A LIN2189 protein; BIG 860.1, structural genomics, MCSG, SAD, PSI-2, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.60A {Listeria innocua CLIP11262} Back     alignment and structure
>2chc_A Protein RV3472; hypothetical protein; 1.69A {Mycobacterium tuberculosis} SCOP: d.17.4.25 Back     alignment and structure
>3b7c_A Uncharacterized protein; NTF-2 like protein, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.70A {Shewanella oneidensis} SCOP: d.17.4.16 Back     alignment and structure
>3gzr_A Uncharacterized protein with A NTF2-like fold; structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: MSE GOL; 1.40A {Caulobacter vibrioides} Back     alignment and structure
>2r4i_A Uncharacterized protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE CIT; 1.60A {Cytophaga hutchinsonii atcc 33406} SCOP: d.17.4.15 Back     alignment and structure
>4i4k_A Uncharacterized protein SGCJ; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: CIT PG4 1PE; 1.70A {Streptomyces globisporus} Back     alignment and structure
>2rfr_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.16A {Novosphingobium aromaticivorans} SCOP: d.17.4.28 Back     alignment and structure
>3ef8_A Putative scyalone dehydratase; YP_496742.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE PG4; 1.50A {Novosphingobium aromaticivorans DSM12444} SCOP: d.17.4.28 Back     alignment and structure
>3b8l_A Uncharacterized protein; putative aromatic ring hydroxylase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.75A {Novosphingobium aromaticivorans} SCOP: d.17.4.28 Back     alignment and structure
>3a76_A Gamma-hexachlorocyclohexane dehydrochlorinase; barrel fold, lyase, detoxification; HET: SPD; 2.25A {Sphingomonas paucimobilis} Back     alignment and structure
>2rgq_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.80A {Nostoc punctiforme} SCOP: d.17.4.25 Back     alignment and structure
>3fsd_A NTF2-like protein of unknown function in nutrient; YP_427473.1, NTF2-like protein of unknown function in nutrie uptake; HET: UNL; 1.70A {Rhodospirillum rubrum atcc 11170} SCOP: d.17.4.0 Back     alignment and structure
>3ecf_A NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Anabaena variabilis atcc 29413} SCOP: d.17.4.21 Back     alignment and structure
>3soy_A NTF2-like superfamily protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Salmonella enterica subsp} Back     alignment and structure
>2f86_B Hypothetical protein K11E8.1D; UNC-43, oligomerization domain, transferase; 2.64A {Caenorhabditis elegans} SCOP: d.17.4.7 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 375
d2gova1184 d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse ( 3e-29
>d2gova1 d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 184 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: SOUL heme-binding protein
domain: Heme-binding protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  109 bits (273), Expect = 3e-29
 Identities = 35/165 (21%), Positives = 58/165 (35%), Gaps = 14/165 (8%)

Query: 215 DLETPKYQILKRT----ANYEVRRYSPFIVVET----NGDKLSGSTGFNDVAGYIFGKNS 266
            +ET  +Q+L        +YE R                   +       +  Y+ G N 
Sbjct: 6   SVETWPWQVLSTGGKEDVSYEERACEGGKFATVEVTDKPVDEALREAMPKIMKYVGGTND 65

Query: 267 KTEKIPMTTPVFTQAYDNEL----KKVSIQIVLPQDKDMSSLPDPNQETLDLRKVEGGIA 322
           K   + MT PV    + NE     KK+ +   +P  +   S P P+ E++ + + EG   
Sbjct: 66  KGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPN-QFQGSPPAPSDESVKIEEREGITV 124

Query: 323 AVLKFSGKPTEDIVHEKEKELHTSLIRDGLRPKIG-CLLARYNDP 366
              +F G   E        +L T+L       +      A Y+ P
Sbjct: 125 YSTQFGGYAKEADYVAHATQLRTTLEGTPATYQGDVYYCAGYDPP 169

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query375
d2gova1184 Heme-binding protein 1 {Mouse (Mus musculus) [TaxI 100.0
d2gexa1138 Nogalamycin biosynthesis protein SnoL {Streptomyce 99.36
d3dxoa1117 Uncharacterized protein Atu0744 {Agrobacterium tum 99.36
d1oh0a_125 Delta-5-3-ketosteroid isomerase, steroid delta-iso 99.25
d2a15a1132 Hypothetical protein Rv0760c {Mycobacterium tuberc 99.23
d2bnga1132 Uncharacterized protein Mb2760 {Mycobacterium tube 99.19
d2geya1144 Putative hydroxylase AclR {Streptomyces galilaeus 99.17
d1ohpa1125 Delta-5-3-ketosteroid isomerase, steroid delta-iso 99.15
d3ebta1131 Uncharacterized protein BPSS0132 {Burkholderia pse 99.07
d2f99a1140 Aklanonic acid methyl ester cyclase, AknH {Strepto 99.06
d1nwwa_145 Limonene-1,2-epoxide hydrolase {Rhodococcus erythr 99.04
d1z1sa1129 Uncharacterized protein PA3332 {Pseudomonas aerugi 98.94
d1sjwa_142 Nogalonic acid methyl ester cyclase SnoaL {Strepto 98.93
d1s5aa_139 Hypothetical protein YesE {Bacillus subtilis [TaxI 98.87
d3dm8a1135 Uncharacterized protein Rpa4348 {Rhodopseudomonas 98.85
d3ec9a1130 Uncharacterized protein BTHI0051 {Burkholderia tha 98.71
d3dmca1133 Uncharacterized protein Ava2261 {Anabaena variabil 98.65
d3en8a1127 Uncharacterized protein BxeB2092 {Burkholderia xen 98.54
d1tuha_131 Hypothetical protein egc068 from a soil-derived mo 98.3
d2k54a1123 Uncharacterized protein Atu0742 {Agrobacterium tum 98.26
d1m98a2142 Orange carotenoid protein, C-terminal domain {Cyan 97.57
d3d9ra1132 Uncharacterized protein ECA1476 {Pectobacterium at 97.36
d1jyha_155 Gyrase inhibitory protein GyrI (SbmC, YeeB) {Esche 96.71
d1r8ea2157 Multidrug-binding domain of transcription activato 96.22
d3er7a1118 Uncharacterized protein Exig0174 {Exiguobacterium 95.9
d2gxfa1128 Hypothetical protein YybH {Bacillus subtilis [TaxI 95.66
d3bb9a1121 Uncharacterized protein Sfri1973 {Shewanella frigi 94.41
d2rgqa1133 Uncharacterized protein NpunR3134 {Nostoc punctifo 93.81
d3ef8a1149 Uncharacterized protein Saro1465 {Novosphingobium 93.07
d3cu3a1162 Uncharacterized protein NpunR1993 {Nostoc punctifo 91.88
d2chca1167 Uncharacterized protein Rv3472 {Mycobacterium tube 91.51
d2r4ia1122 Uncharacterized protein CHU142 {Cytophaga hutchins 90.95
d2rfra1153 Uncharacterized protein Saro3722 {Novosphingobium 87.7
d3b7ca1121 Uncharacterized protein SO0125 {Shewanella oneiden 87.41
d3b8la1144 Uncharacterized protein Saro3538 {Novosphingobium 86.26
d2rcda1127 Uncharacterized protein ECA3500 {Pectobacterium at 85.49
d3cnxa1153 Uncharacterized protein SAV4671 {Streptomyces aver 83.63
d2ux0a1135 Association domain of calcium/calmodulin-dependent 81.24
>d2gova1 d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: SOUL heme-binding protein
domain: Heme-binding protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.9e-43  Score=316.16  Aligned_cols=158  Identities=23%  Similarity=0.268  Sum_probs=144.8

Q ss_pred             CCCCCCceeEeeecC----CeEEEEeCCceEEEeccCC----cccchhhHHhhhcccCCCCCCCCCCCCCceEEEeecCC
Q 017224          214 PDLETPKYQILKRTA----NYEVRRYSPFIVVETNGDK----LSGSTGFNDVAGYIFGKNSKTEKIPMTTPVFTQAYDNE  285 (375)
Q Consensus       214 ~~~E~P~Y~Vl~~~~----~yEiR~Y~~~~wv~t~~~~----~A~~~gF~~L~~YI~G~N~~~~kI~MT~PV~~~~~~~~  285 (375)
                      .++|||+|+||++.+    +||||+|++.+||||+..+    .|+..||++|++||+|+|++++||+||+||++++.+++
T Consensus         5 ~~~E~~~y~v~~~~~~~~~~fE~R~Y~~~~wv~t~~~~~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~~~~~   84 (184)
T d2gova1           5 GSVETWPWQVLSTGGKEDVSYEERACEGGKFATVEVTDKPVDEALREAMPKIMKYVGGTNDKGVGMGMTVPVSFAVFPNE   84 (184)
T ss_dssp             CSCCSCCCEEEEECCCSSSCEEEEECCCCEEEEEEEESSCHHHHHHHHHHHHHHHHHTCBTTCCCCCCCCCEEEEEEECT
T ss_pred             ccccCCCcEEEEECCccCCCEEEEecCCceEEEEEecCCChhhHHHhhhHHHhheeccCCCCCcccccccceEEEEecCC
Confidence            488999999999865    7999999999999998653    36788999999999999999999999999999986543


Q ss_pred             ---C-cEEEEEEEecCCCCCCCCCCCCCCCeeEEEeCCeEEEEEEecCcCChhHHHHHHHHHHHHHHhCCCCccCc-EEE
Q 017224          286 ---L-KKVSIQIVLPQDKDMSSLPDPNQETLDLRKVEGGIAAVLKFSGKPTEDIVHEKEKELHTSLIRDGLRPKIG-CLL  360 (375)
Q Consensus       286 ---~-~~~tmsF~lP~~~q~~~~P~P~d~~V~i~~~p~~~vaV~~F~G~~te~~~~~~~~~L~~~L~~~G~~~~~~-~~~  360 (375)
                         | +.++|+|+||++++ ++||+|+|++|+|++.|+.++||++|+|+++++++.++.++|+++|+++|+.+.+. +++
T Consensus        85 ~~~~~~~~~m~F~lP~~~~-~~~P~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~  163 (184)
T d2gova1          85 DGSLQKKLKVWFRIPNQFQ-GSPPAPSDESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTPATYQGDVYYC  163 (184)
T ss_dssp             TSCEEEEEEEEECCCHHHH-HSCCCBCSSSCEEEECCSCEEEEEEEESCCCHHHHHHHHHHHHHHTTTSSCCEEEEEEEE
T ss_pred             CCcccCcEEEEEEcchhhc-ccCCCCccccceeeccCcceEEEEEeCCcccHHHHHHHHHHHHHHHHHCCCcccCCCEEE
Confidence               3 57999999999998 79999999999999999999999999999999999999999999999999999875 678


Q ss_pred             EEEcCCCCCccccc
Q 017224          361 ARYNDPGQTWSFIM  374 (375)
Q Consensus       361 A~Yd~P~~tp~fl~  374 (375)
                      |+||+| |+| |+|
T Consensus       164 a~Yd~P-~~p-~~R  175 (184)
T d2gova1         164 AGYDPP-MKP-YGR  175 (184)
T ss_dssp             EESSCC-SSS-SCC
T ss_pred             EEeCCC-CCC-CCc
Confidence            999999 786 776
>d2gexa1 d.17.4.9 (A:2-139) Nogalamycin biosynthesis protein SnoL {Streptomyces nogalater [TaxId: 38314]} Back     information, alignment and structure
>d3dxoa1 d.17.4.19 (A:1-117) Uncharacterized protein Atu0744 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1oh0a_ d.17.4.3 (A:) Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2a15a1 d.17.4.3 (A:5-136) Hypothetical protein Rv0760c {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2bnga1 d.17.4.8 (A:13-144) Uncharacterized protein Mb2760 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2geya1 d.17.4.9 (A:2-145) Putative hydroxylase AclR {Streptomyces galilaeus [TaxId: 33899]} Back     information, alignment and structure
>d1ohpa1 d.17.4.3 (A:1-125) Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI {Comamonas testosteroni, also known as Pseudomonas testosteroni [TaxId: 285]} Back     information, alignment and structure
>d3ebta1 d.17.4.9 (A:1-131) Uncharacterized protein BPSS0132 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d2f99a1 d.17.4.9 (A:2-141) Aklanonic acid methyl ester cyclase, AknH {Streptomyces galilaeus [TaxId: 33899]} Back     information, alignment and structure
>d1nwwa_ d.17.4.8 (A:) Limonene-1,2-epoxide hydrolase {Rhodococcus erythropolis [TaxId: 1833]} Back     information, alignment and structure
>d1z1sa1 d.17.4.10 (A:1-129) Uncharacterized protein PA3332 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1sjwa_ d.17.4.9 (A:) Nogalonic acid methyl ester cyclase SnoaL {Streptomyces nogalater [TaxId: 38314]} Back     information, alignment and structure
>d1s5aa_ d.17.4.10 (A:) Hypothetical protein YesE {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d3dm8a1 d.17.4.20 (A:1-135) Uncharacterized protein Rpa4348 {Rhodopseudomonas palustris [TaxId: 1076]} Back     information, alignment and structure
>d3ec9a1 d.17.4.10 (A:10-139) Uncharacterized protein BTHI0051 {Burkholderia thailandensis [TaxId: 57975]} Back     information, alignment and structure
>d3dmca1 d.17.4.10 (A:1-133) Uncharacterized protein Ava2261 {Anabaena variabilis [TaxId: 1172]} Back     information, alignment and structure
>d3en8a1 d.17.4.20 (A:1-127) Uncharacterized protein BxeB2092 {Burkholderia xenovorans [TaxId: 36873]} Back     information, alignment and structure
>d1tuha_ d.17.4.11 (A:) Hypothetical protein egc068 from a soil-derived mobile gene cassette {uncultured organism [TaxId: 155900]} Back     information, alignment and structure
>d2k54a1 d.17.4.29 (A:1-123) Uncharacterized protein Atu0742 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1m98a2 d.17.4.6 (A:176-317) Orange carotenoid protein, C-terminal domain {Cyanobacteria (Arthrospira maxima) [TaxId: 129910]} Back     information, alignment and structure
>d3d9ra1 d.17.4.27 (A:3-134) Uncharacterized protein ECA1476 {Pectobacterium atrosepticum [TaxId: 29471]} Back     information, alignment and structure
>d1jyha_ d.60.1.3 (A:) Gyrase inhibitory protein GyrI (SbmC, YeeB) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r8ea2 d.60.1.1 (A:121-277) Multidrug-binding domain of transcription activator BmrR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d3er7a1 d.17.4.24 (A:5-122) Uncharacterized protein Exig0174 {Exiguobacterium sibiricum 255-15 [TaxId: 262543]} Back     information, alignment and structure
>d2gxfa1 d.17.4.22 (A:1-128) Hypothetical protein YybH {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d3bb9a1 d.17.4.16 (A:27-147) Uncharacterized protein Sfri1973 {Shewanella frigidimarina [TaxId: 56812]} Back     information, alignment and structure
>d2rgqa1 d.17.4.25 (A:1-133) Uncharacterized protein NpunR3134 {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure
>d3ef8a1 d.17.4.28 (A:1-149) Uncharacterized protein Saro1465 {Novosphingobium aromaticivorans [TaxId: 48935]} Back     information, alignment and structure
>d3cu3a1 d.17.4.28 (A:9-170) Uncharacterized protein NpunR1993 {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure
>d2chca1 d.17.4.25 (A:1-167) Uncharacterized protein Rv3472 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2r4ia1 d.17.4.15 (A:1-122) Uncharacterized protein CHU142 {Cytophaga hutchinsonii [TaxId: 985]} Back     information, alignment and structure
>d2rfra1 d.17.4.28 (A:1-153) Uncharacterized protein Saro3722 {Novosphingobium aromaticivorans [TaxId: 48935]} Back     information, alignment and structure
>d3b7ca1 d.17.4.16 (A:1-121) Uncharacterized protein SO0125 {Shewanella oneidensis [TaxId: 70863]} Back     information, alignment and structure
>d3b8la1 d.17.4.28 (A:1-144) Uncharacterized protein Saro3538 {Novosphingobium aromaticivorans [TaxId: 48935]} Back     information, alignment and structure
>d2rcda1 d.17.4.18 (A:1-127) Uncharacterized protein ECA3500 {Pectobacterium atrosepticum [TaxId: 29471]} Back     information, alignment and structure
>d3cnxa1 d.17.4.17 (A:5-157) Uncharacterized protein SAV4671 {Streptomyces avermitilis [TaxId: 33903]} Back     information, alignment and structure
>d2ux0a1 d.17.4.7 (A:387-521) Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure