Citrus Sinensis ID: 017226

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-----
Protein Sequence
MGPKSPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHEEEEEEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHcccccEEHHHHccccccccccccccEEEEEEEHHHHHHHHHHHcEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccEEEHEEEEcccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mgpkspshnlkKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKsncyhregheaaceysDTYYMLIFGAVQLILsqapdfhniQSLSVIAAVMSFAYSFIGFGLGVAKVIGngfvmgsfsgvstTTSIEKMWLVAQALGDIAFAYPYSLILIEIQdtlkspppanqtmkkastmSIITTTIFYLFCggfgyaafgdntpgnlltgfgfyepywlidLANAFIVIHLVGgyqvysqpiFAHFEKWIcekfpengflnnefflkpplmpafrwnplrlcfRTVYVVSVTAIAMSFPYFNQVLGVIggvifwpltiyfpVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
Flexible Loop (DISEMBL)
mgpkspshnlKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
Low Complexity Region (SEG)
MGPKSPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
Disordered region (IsUnstruct)
*************IINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDT****************MSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGII*****
Disordered Region (DISOPRED)
*****PS*NLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKL*
Disordered Region (DISEMBL)
MGPKSPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
Disordered Region (DISPRO)
****SPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISA*L*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGPKSPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	375	2.2.26 [Sep-21-2011]
Q9FF99	467	Probable amino acid perme	yes	no	0.946	0.760	0.562	1e-111
Q38967	493	Amino acid permease 2 OS=	no	no	0.92	0.699	0.517	1e-109
O80592	475	Amino acid permease 8 OS=	no	no	0.922	0.728	0.518	1e-103
Q39134	476	Amino acid permease 3 OS=	no	no	0.885	0.697	0.529	1e-103
Q9FN04	466	Amino acid permease 4 OS=	no	no	0.92	0.740	0.491	1e-101
Q8GUM3	480	Amino acid permease 5 OS=	no	no	0.917	0.716	0.519	1e-100
Q42400	485	Amino acid permease 1 OS=	no	no	0.925	0.715	0.488	1e-100
P92934	481	Amino acid permease 6 OS=	no	no	0.925	0.721	0.497	7e-96
Q9FKS8	446	Lysine histidine transpor	no	no	0.805	0.677	0.295	3e-30
Q9C733	453	Lysine histidine transpor	no	no	0.802	0.664	0.297	2e-28

>sp|Q9FF99|AAP7_ARATH Probable amino acid permease 7 OS=Arabidopsis thaliana GN=AAP7 PE=1 SV=1

 Score =  401 bits (1031), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/359 (56%), Positives = 260/359 (72%), Gaps = 4/359 (1%)

Query: 19  GKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDT--YYML 76
           GK N   C   V++ L+G  IAYT+  A   RAI KSNCYHR GH A C Y D   Y+M+
Sbjct: 107 GKKNEIVCGVVVYISLFGCGIAYTIVIATCSRAIMKSNCYHRNGHNATCSYGDNNNYFMV 166

Query: 77  IFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTT 136
           +FG  Q+ +SQ P+FHN+  LS++AA+MSF YSFIG GL + K+I N  + GS  G+   
Sbjct: 167 LFGLTQIFMSQIPNFHNMVWLSLVAAIMSFTYSFIGIGLALGKIIENRKIEGSIRGIPAE 226

Query: 137 TSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLF 196
              EK+W+V QALG+IAF+YP+S+IL+EIQDTL+SPP   QTMKKAST+++   T F+  
Sbjct: 227 NRGEKVWIVFQALGNIAFSYPFSIILLEIQDTLRSPPAEKQTMKKASTVAVFIQTFFFFC 286

Query: 197 CGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWI 256
           CG FGYAAFGD+TPGNLLTGFGFYEP+WL+D ANA IV+HLVGGYQVYSQPIFA  E+ +
Sbjct: 287 CGCFGYAAFGDSTPGNLLTGFGFYEPFWLVDFANACIVLHLVGGYQVYSQPIFAAAERSL 346

Query: 257 CEKFPENGFLNNEFFLKPPLM--PAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVI 314
            +K+PEN F+   +  K PL+     R NP+R+C RT+YV+  T +A+ FPYFN+VLGV+
Sbjct: 347 TKKYPENKFIARFYGFKLPLLRGETVRLNPMRMCLRTMYVLITTGVAVMFPYFNEVLGVV 406

Query: 315 GGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAK 373
           G + FWPL +YFPVEM   Q  I +WTR W++LR FS+VC +V    LVGSI G++ AK
Sbjct: 407 GALAFWPLAVYFPVEMCILQKKIRSWTRPWLLLRGFSFVCLLVCLLSLVGSIYGLVGAK 465

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for neutral amino acids.
Arabidopsis thaliana (taxid: 3702)

>sp|Q38967|AAP2_ARATH Amino acid permease 2 OS=Arabidopsis thaliana GN=AAP2 PE=1 SV=1

 Score =  397 bits (1019), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 180/348 (51%), Positives = 250/348 (71%), Gaps = 3/348 (0%)

Query: 26  CSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLIL 85
           C    ++ L+G AI YT+ ++ISM AI++SNC+H+ G +  C  S   YM++FG  +++L
Sbjct: 133 CGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHKSGGKDPCHMSSNPYMIVFGVAEILL 192

Query: 86  SQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVS--TTTSIEKMW 143
           SQ PDF  I  +S++AAVMSF YS IG  LG+ +V  NG   GS +G+S  T T  +K+W
Sbjct: 193 SQVPDFDQIWWISIVAAVMSFTYSAIGLALGIVQVAANGVFKGSLTGISIGTVTQTQKIW 252

Query: 144 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYA 203
              QALGDIAFAY YS++LIEIQDT++SPP  ++TMKKA+ +SI  TTIFY+ CG  GYA
Sbjct: 253 RTFQALGDIAFAYSYSVVLIEIQDTVRSPPAESKTMKKATKISIAVTTIFYMLCGSMGYA 312

Query: 204 AFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPEN 263
           AFGD  PGNLLTGFGFY P+WL+D+ANA IV+HLVG YQV++QPIFA  EK + E++P+N
Sbjct: 313 AFGDAAPGNLLTGFGFYNPFWLLDIANAAIVVHLVGAYQVFAQPIFAFIEKSVAERYPDN 372

Query: 264 GFLNNEFFLK-PPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPL 322
            FL+ EF ++ P     ++ N  R+ +R+ +VV+ T I+M  P+FN V+G++G + FWPL
Sbjct: 373 DFLSKEFEIRIPGFKSPYKVNVFRMVYRSGFVVTTTVISMLMPFFNDVVGILGALGFWPL 432

Query: 323 TIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGII 370
           T+YFPVEMY KQ  +E W+ +WV L++ S  C ++S    VGSI G++
Sbjct: 433 TVYFPVEMYIKQRKVEKWSTRWVCLQMLSVACLVISVVAGVGSIAGVM 480

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for histidine, arginine, glutamate and neutral amino acids, favoring small amino acids such as alanine, asparagine and glutamine. Accepts also large aromatic residues such as in phenlalanine or tyrosine. Has a much higher affinity for basic amino acids as compared with AAP1. May function in xylem-to-phloem transfer and in uptake of amino acids assimilated in the green silique tissue.

Arabidopsis thaliana (taxid: 3702)

>sp|O80592|AAP8_ARATH Amino acid permease 8 OS=Arabidopsis thaliana GN=AAP8 PE=1 SV=1

 Score =  375 bits (963), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/351 (51%), Positives = 243/351 (69%), Gaps = 5/351 (1%)

Query: 26  CSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLIL 85
           C    +V L G  I YT+T++IS+ AI KSNCYH +GH+A C  S+  YM  FG VQ+IL
Sbjct: 115 CGVAQYVNLVGVTIGYTITASISLVAIGKSNCYHDKGHKAKCSVSNYPYMAAFGIVQIIL 174

Query: 86  SQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKV----IGNGFVMGSFSGVSTTTSIEK 141
           SQ P+FH +  LS+IAAVMSF+Y+ IG GL +A V    IG   + G+  GV  T S EK
Sbjct: 175 SQLPNFHKLSFLSIIAAVMSFSYASIGIGLAIATVASGKIGKTELTGTVIGVDVTAS-EK 233

Query: 142 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFG 201
           +W + QA+GDIAF+Y ++ ILIEIQDTL+S PP N+ MK+AS + + TTT+FY+ CG  G
Sbjct: 234 VWKLFQAIGDIAFSYAFTTILIEIQDTLRSSPPENKVMKRASLVGVSTTTVFYILCGCIG 293

Query: 202 YAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFP 261
           YAAFG+  PG+ LT FGFYEPYWLID ANA I +HL+G YQVY+QP F   E+   +K+P
Sbjct: 294 YAAFGNQAPGDFLTDFGFYEPYWLIDFANACIALHLIGAYQVYAQPFFQFVEENCNKKWP 353

Query: 262 ENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWP 321
           ++ F+N E+  K PL+   R N  RL +RT YVV  T +AM FP+FN +LG++G   FWP
Sbjct: 354 QSNFINKEYSSKVPLLGKCRVNLFRLVWRTCYVVLTTFVAMIFPFFNAILGLLGAFAFWP 413

Query: 322 LTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISA 372
           LT+YFPV M+  Q  ++ ++R+W+ L +   VC IVS    VGSI G+I++
Sbjct: 414 LTVYFPVAMHIAQAKVKKYSRRWLALNLLVLVCLIVSALAAVGSIIGLINS 464

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for glutamate, aspartate and neutral and acidic amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39134|AAP3_ARATH Amino acid permease 3 OS=Arabidopsis thaliana GN=AAP3 PE=1 SV=2

 Score =  374 bits (959), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 177/334 (52%), Positives = 234/334 (70%), Gaps = 2/334 (0%)

Query: 26  CSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLIL 85
           C    ++ ++G AI YT+ SAISM AI++SNC+H+ G +  C  +   YM+ FG VQ++ 
Sbjct: 117 CGIVQYLNIFGVAIGYTIASAISMMAIKRSNCFHKSGGKDPCHMNSNPYMIAFGLVQILF 176

Query: 86  SQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVS--TTTSIEKMW 143
           SQ PDF  +  LS++AAVMSF YS  G  LG+A+V+ NG V GS +G+S    T  +K+W
Sbjct: 177 SQIPDFDQLWWLSILAAVMSFTYSSAGLALGIAQVVVNGKVKGSLTGISIGAVTETQKIW 236

Query: 144 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYA 203
              QALGDIAFAY YS+ILIEIQDT+KSPP   +TMKKA+ +S+  TT+FY+ CG  GYA
Sbjct: 237 RTFQALGDIAFAYSYSIILIEIQDTVKSPPSEEKTMKKATLVSVSVTTMFYMLCGCMGYA 296

Query: 204 AFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPEN 263
           AFGD +PGNLLTGFGFY PYWL+D+ANA IVIHL+G YQVY QP+FA  EK    +FP++
Sbjct: 297 AFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLIGAYQVYCQPLFAFIEKQASIQFPDS 356

Query: 264 GFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLT 323
            F+  +  +  P     R N  RL +RTV+V+  T I+M  P+FN V+G++G + FWPLT
Sbjct: 357 EFIAKDIKIPIPGFKPLRLNVFRLIWRTVFVIITTVISMLLPFFNDVVGLLGALGFWPLT 416

Query: 324 IYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIV 357
           +YFPVEMY  Q  I  W+ +WV L+VFS  C +V
Sbjct: 417 VYFPVEMYIAQKKIPRWSTRWVCLQVFSLGCLVV 450

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for GABA, tryptophan and both neutral and basic amino acids. High affinity transport of cationic amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FN04|AAP4_ARATH Amino acid permease 4 OS=Arabidopsis thaliana GN=AAP4 PE=1 SV=1

 Score =  368 bits (944), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 171/348 (49%), Positives = 239/348 (68%), Gaps = 3/348 (0%)

Query: 26  CSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLIL 85
           C    ++ L+G  + YT+ ++ISM AI++SNC+H  G +  C  S   YM++FG  +++L
Sbjct: 106 CGLIQYLNLFGITVGYTIAASISMMAIKRSNCFHESGGKNPCHMSSNPYMIMFGVTEILL 165

Query: 86  SQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVS--TTTSIEKMW 143
           SQ  DF  I  LS++AA+MSF YS IG  LG+ +V  NG V GS +G+S    T  +K+W
Sbjct: 166 SQIKDFDQIWWLSIVAAIMSFTYSAIGLALGIIQVAANGVVKGSLTGISIGAVTQTQKIW 225

Query: 144 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYA 203
              QALGDIAFAY YS++LIEIQDT++SPP  ++TMK A+ +SI  TT FY+ CG  GYA
Sbjct: 226 RTFQALGDIAFAYSYSVVLIEIQDTVRSPPAESKTMKIATRISIAVTTTFYMLCGCMGYA 285

Query: 204 AFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPEN 263
           AFGD  PGNLLTGFGFY P+WL+D+ANA IVIHLVG YQV++QPIFA  EK    +FP++
Sbjct: 286 AFGDKAPGNLLTGFGFYNPFWLLDVANAAIVIHLVGAYQVFAQPIFAFIEKQAAARFPDS 345

Query: 264 GFLNNEFFLK-PPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPL 322
             +  E+ ++ P     ++ N  R  +R+ +VV  T I+M  P+FN V+G++G + FWPL
Sbjct: 346 DLVTKEYEIRIPGFRSPYKVNVFRAVYRSGFVVLTTVISMLMPFFNDVVGILGALGFWPL 405

Query: 323 TIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGII 370
           T+YFPVEMY +Q  +E W+ KWV L++ S  C +++    VGSI G++
Sbjct: 406 TVYFPVEMYIRQRKVERWSMKWVCLQMLSCGCLMITLVAGVGSIAGVM 453

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for neutral amino acids, favoring small amino acids such as alanine, asparagine and glutamine. Accepts also large aromatic residues such as in phenlalanine or tyrosine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUM3|AAP5_ARATH Amino acid permease 5 OS=Arabidopsis thaliana GN=AAP5 PE=1 SV=1

 Score =  366 bits (939), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/356 (51%), Positives = 237/356 (66%), Gaps = 12/356 (3%)

Query: 26  CSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLIL 85
           C    +V L+GTAI YT+ SAIS+ AIQ+++C    G    C  +   YM+ FG VQ+I 
Sbjct: 115 CGVVQYVNLFGTAIGYTIASAISLVAIQRTSCQQMNGPNDPCHVNGNVYMIAFGIVQIIF 174

Query: 86  SQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVS--------TTT 137
           SQ PDF  +  LS++AAVMSFAYS IG GLGV+KV+ N  + GS +GV+        T T
Sbjct: 175 SQIPDFDQLWWLSIVAAVMSFAYSAIGLGLGVSKVVENKEIKGSLTGVTVGTVTLSGTVT 234

Query: 138 SIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFC 197
           S +K+W   Q+LG+IAFAY YS+ILIEIQDT+KSPP    TM+KA+ +S+  TT+FY+ C
Sbjct: 235 SSQKIWRTFQSLGNIAFAYSYSMILIEIQDTVKSPPAEVNTMRKATFVSVAVTTVFYMLC 294

Query: 198 GGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWIC 257
           G  GYAAFGDN PGNLL   GF  PYWL+D+AN  IVIHLVG YQVY QP+FA  EK   
Sbjct: 295 GCVGYAAFGDNAPGNLLAHGGFRNPYWLLDIANLAIVIHLVGAYQVYCQPLFAFVEKEAS 354

Query: 258 EKFPENGFLNNEFFLKPPLMPA--FRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIG 315
            +FPE+ F+  E  +K  L P   F  N  RL +RT +V++ T I+M  P+FN V+G++G
Sbjct: 355 RRFPESEFVTKE--IKIQLFPGKPFNLNLFRLVWRTFFVMTTTLISMLMPFFNDVVGLLG 412

Query: 316 GVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIIS 371
            + FWPLT+YFPVEMY  Q N+  W  KWV L+V S  C  VS     GS+ GI+S
Sbjct: 413 AIGFWPLTVYFPVEMYIAQKNVPRWGTKWVCLQVLSVTCLFVSVAAAAGSVIGIVS 468

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for glutamate and both neutral and basic amino acids. Reduced affinities for asparagine and valine. High affinity transport of the cationic amino acids arginine and lysine, but not of histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q42400|AAP1_ARATH Amino acid permease 1 OS=Arabidopsis thaliana GN=AAP1 PE=1 SV=1

 Score =  365 bits (936), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 171/350 (48%), Positives = 235/350 (67%), Gaps = 3/350 (0%)

Query: 26  CSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLIL 85
           C    +  L G  + YT+T++IS+ A+ KSNC+H +GH A C  S+  YM +FG +Q+IL
Sbjct: 124 CGVAQYGNLIGVTVGYTITASISLVAVGKSNCFHDKGHTADCTISNYPYMAVFGIIQVIL 183

Query: 86  SQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVST---TTSIEKM 142
           SQ P+FH +  LS++AAVMSF Y+ IG GL +A V G      S +G +     T+ +K+
Sbjct: 184 SQIPNFHKLSFLSIMAAVMSFTYATIGIGLAIATVAGGKVGKTSMTGTAVGVDVTAAQKI 243

Query: 143 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGY 202
           W   QA+GDIAFAY Y+ +LIEIQDTL+S P  N+ MK+AS + + TTT FY+ CG  GY
Sbjct: 244 WRSFQAVGDIAFAYAYATVLIEIQDTLRSSPAENKAMKRASLVGVSTTTFFYILCGCIGY 303

Query: 203 AAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPE 262
           AAFG+N PG+ LT FGF+EP+WLID ANA I +HL+G YQV++QPIF   EK     +P+
Sbjct: 304 AAFGNNAPGDFLTDFGFFEPFWLIDFANACIAVHLIGAYQVFAQPIFQFVEKKCNRNYPD 363

Query: 263 NGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPL 322
           N F+ +E+ +  P +  F  +  RL +RT YVV  T +AM FP+FN +LG+IG   FWPL
Sbjct: 364 NKFITSEYSVNVPFLGKFNISLFRLVWRTAYVVITTVVAMIFPFFNAILGLIGAASFWPL 423

Query: 323 TIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISA 372
           T+YFPVEM+  Q  I+ ++ +W+ L+   YVC IVS     GSI G+IS+
Sbjct: 424 TVYFPVEMHIAQTKIKKYSARWIALKTMCYVCLIVSLLAAAGSIAGLISS 473

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for histidine, glutamate and neutral amino acids. Reduced affinities for asparagine and valine. Involved in amino acid uptake from the apoplastic cavity into the embryo cells for storage protein accumulation and in root amino acid uptake.

Arabidopsis thaliana (taxid: 3702)

>sp|P92934|AAP6_ARATH Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1

 Score =  351 bits (900), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 175/352 (49%), Positives = 237/352 (67%), Gaps = 5/352 (1%)

Query: 26  CSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLIL 85
           C    +  L G  I YT+T++ISM A+++SNC+H+ GH   C  S+T +M+IF  +Q+IL
Sbjct: 120 CGLAQYGNLIGITIGYTITASISMVAVKRSNCFHKNGHNVKCATSNTPFMIIFAIIQIIL 179

Query: 86  SQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNG-FVMGSFSGVSTTTSI---EK 141
           SQ P+FHN+  LS++AAVMSF Y+ IG GL +AK  G G  V  + +GV+    +   EK
Sbjct: 180 SQIPNFHNLSWLSILAAVMSFCYASIGVGLSIAKAAGGGEHVRTTLTGVTVGIDVSGAEK 239

Query: 142 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPA-NQTMKKASTMSIITTTIFYLFCGGF 200
           +W   QA+GDIAFAY YS +LIEIQDTLK+ PP+ N+ MK+AS + + TTT FY+ CG  
Sbjct: 240 IWRTFQAIGDIAFAYAYSTVLIEIQDTLKAGPPSENKAMKRASLVGVSTTTFFYMLCGCV 299

Query: 201 GYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKF 260
           GYAAFG++ PGN LTGFGFYEP+WLID AN  I +HL+G YQV+ QPIF   E    +++
Sbjct: 300 GYAAFGNDAPGNFLTGFGFYEPFWLIDFANVCIAVHLIGAYQVFCQPIFQFVESQSAKRW 359

Query: 261 PENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFW 320
           P+N F+  E+ +  P    F  N LRL +RT YVV    +AM FP+FN  LG+IG   FW
Sbjct: 360 PDNKFITGEYKIHVPCCGDFSINFLRLVWRTSYVVVTAVVAMIFPFFNDFLGLIGAASFW 419

Query: 321 PLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISA 372
           PLT+YFP+EM+  Q  I  ++  W  L++ S+ CFIVS     GS+QG+I +
Sbjct: 420 PLTVYFPIEMHIAQKKIPKFSFTWTWLKILSWTCFIVSLVAAAGSVQGLIQS 471

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for tryptophan, proline, and neutral and acidic amino acids. Have an affinity for aspartate in a physiological range. Involved in the uptake of amino acids diffusing out of the xylem tracheids into the xylem parenchyma.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1

 Score =  132 bits (333), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 103/348 (29%), Positives = 163/348 (46%), Gaps = 46/348 (13%)

Query: 36  GTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSD----TYYMLIFGAVQLILSQAPDF 91
           G  I Y VT   S++            HE  C+       TY+++IF +V  +LS  P+F
Sbjct: 129 GVCIVYMVTGGKSLKKF----------HELVCDDCKPIKLTYFIMIFASVHFVLSHLPNF 178

Query: 92  HNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGD 151
           ++I  +S+ AAVMS +YS I +    +K +      G +   +T  ++   +     LGD
Sbjct: 179 NSISGVSLAAAVMSLSYSTIAWASSASKGVQEDVQYG-YKAKTTAGTVFNFF---SGLGD 234

Query: 152 IAFAYPYSLILIEIQDTLKSPP--PANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT 209
           +AFAY    +++EIQ T+ S P  P+   M +   ++ I   + Y      GY  FG+  
Sbjct: 235 VAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVIVAYIVVALCYFPVALVGYYIFGNGV 294

Query: 210 PGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNE 269
             N+L      +P WLI  AN F+VIH++G YQ+Y+ P+F   E  + +K      LN  
Sbjct: 295 EDNILMSLK--KPAWLIATANIFVVIHVIGSYQIYAMPVFDMMETLLVKK------LN-- 344

Query: 270 FFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFP-- 327
              +P          LR   R  YV +   + M+FP+F  +L   GG  F P T + P  
Sbjct: 345 --FRPT-------TTLRFFVRNFYVAATMFVGMTFPFFGGLLAFFGGFAFAPTTYFLPCV 395

Query: 328 --VEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAK 373
             + +Y  +    +W   WV + VF     ++S  G + +I  +I AK
Sbjct: 396 IWLAIYKPKKYSLSWWANWVCI-VFGLFLMVLSPIGGLRTI--VIQAK 440

Amino acid-proton symporter. Transporter with a broad specificity for histidine, lysine, glutamic acid, alanine, serine, proline and glycine. Involved in both apoplastic transport of amino acids in leaves and their uptake by roots.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C733|LHTL1_ARATH Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2

 Score =  127 bits (318), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/349 (29%), Positives = 163/349 (46%), Gaps = 48/349 (13%)

Query: 36  GTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSD----TYYMLIFGAVQLILSQAPDF 91
           G  I Y VT   S++            HE AC+       +++++IF +   +LS  P+F
Sbjct: 136 GVCIVYMVTGGQSLKKF----------HEIACQDCSPIRLSFFIMIFASSHFVLSHLPNF 185

Query: 92  HNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGD 151
           ++I  +S++AAVMS +YS I +    AK +      G  SG + +T +         LG 
Sbjct: 186 NSISGVSLVAAVMSLSYSTIAWTATAAKGVQEDVQYGYKSGTTASTVLSFF----TGLGG 241

Query: 152 IAFAYPYSLILIEIQDTLKSPP--PANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT 209
           IAFAY    +++EIQ T+ S P  P+   M +   ++ +   + Y      GY  FG+  
Sbjct: 242 IAFAYAGHNVVLEIQATIPSTPSNPSKGPMWRGVVVAYVVVALCYFPVALVGYGVFGNAV 301

Query: 210 PGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNE 269
             N+L       P W I  AN F+V+H++G YQ+++ P+F   E ++ +K      LN  
Sbjct: 302 LDNVL--MSLETPVWAIATANLFVVMHVIGSYQIFAMPVFDMVETFLVKK------LN-- 351

Query: 270 FFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVE 329
              KP  +       LR   R VYV     I +  P+F  +L   GG  F P + + P  
Sbjct: 352 --FKPSTV-------LRFIVRNVYVALTMFIGIMIPFFGGLLAFFGGFAFAPTSYFLPCI 402

Query: 330 MYF-----KQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAK 373
           M+      K+ ++  WT  WV + V   V  I+S+ G  G  Q II +K
Sbjct: 403 MWLLIYKPKRFSLSWWT-NWVCI-VLGVVLMILSSIG--GLRQIIIQSK 447

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	375
255586130	461	amino acid transporter, putative [Ricinu	0.986	0.802	0.682	1e-152
225462048	472	PREDICTED: probable amino acid permease	0.994	0.790	0.660	1e-150
224122284	458	amino acid permease [Populus trichocarpa	0.949	0.777	0.674	1e-144
224146569	431	amino acid permease [Populus trichocarpa	0.981	0.853	0.647	1e-143
359494348	623	PREDICTED: probable amino acid permease	0.96	0.577	0.645	1e-142
296089993	458	unnamed protein product [Vitis vinifera]	0.96	0.786	0.645	1e-142
255586132	456	amino acid transporter, putative [Ricinu	0.946	0.778	0.650	1e-137
357495243	467	Amino acid permease [Medicago truncatula	0.952	0.764	0.641	1e-136
356569591	447	PREDICTED: probable amino acid permease	0.994	0.834	0.635	1e-135
224122280	440	amino acid permease [Populus trichocarpa	0.938	0.8	0.636	1e-134

>gi|255586130|ref|XP_002533727.1| amino acid transporter, putative [Ricinus communis] gi|223526365|gb|EEF28658.1| amino acid transporter, putative [Ricinus communis]

 Score =  542 bits (1397), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 254/372 (68%), Positives = 310/372 (83%), Gaps = 2/372 (0%)

Query: 6   PSHNLK-KEIINVS-GKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGH 63
           PS N    + ++VS GK  +W C  FV + LYGT IAYT+TSAISMRAI+KSNCYH+EGH
Sbjct: 90  PSRNRSYLQAVDVSLGKKASWICGIFVELSLYGTGIAYTITSAISMRAIRKSNCYHKEGH 149

Query: 64  EAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGN 123
            AACE+SDT YMLIFGA Q+I+SQ PDFHN++ LS++AAVMSF YS IGFGLG+A+VI N
Sbjct: 150 SAACEFSDTSYMLIFGAFQIIVSQIPDFHNMEWLSILAAVMSFTYSSIGFGLGLAQVIEN 209

Query: 124 GFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKAS 183
           G+ MGS +GVS +++ +K+W ++QALGDIAFAYPYSLIL+EIQDTLKSPP  N+TM+KAS
Sbjct: 210 GYAMGSITGVSASSAADKVWNISQALGDIAFAYPYSLILLEIQDTLKSPPTENETMRKAS 269

Query: 184 TMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQV 243
           T++++ TT FYL CG FGYAAFG++TPGNLLTGFGFYEPYWLID ANA IV+HLVGGYQV
Sbjct: 270 TIALVVTTFFYLCCGAFGYAAFGEDTPGNLLTGFGFYEPYWLIDFANACIVLHLVGGYQV 329

Query: 244 YSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMS 303
           YSQP+FA  EKW  E+ P + F+NN + LK PL+PAF  N  R+CFRT+YVVS TAI+M 
Sbjct: 330 YSQPVFATIEKWFAERHPASRFINNNYSLKLPLLPAFGLNAFRICFRTLYVVSTTAISMI 389

Query: 304 FPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLV 363
           FPYFNQV+G++G + FWPLTIYFPVEMYF+Q NIEAWT KW+MLR FS V F+V+   LV
Sbjct: 390 FPYFNQVIGLLGALNFWPLTIYFPVEMYFRQRNIEAWTIKWIMLRAFSIVVFLVAAIALV 449

Query: 364 GSIQGIISAKLS 375
           GS++G+ISAKLS
Sbjct: 450 GSVEGVISAKLS 461

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462048|ref|XP_002268936.1| PREDICTED: probable amino acid permease 7 [Vitis vinifera] gi|296089992|emb|CBI39811.3| unnamed protein product [Vitis vinifera]

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 247/374 (66%), Positives = 302/374 (80%), Gaps = 1/374 (0%)

Query: 2   GPKSPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHRE 61
           GP      L+   IN+ G  +AW C+  V++ LYG  IAYT+TSAISMRAI KSNCYHRE
Sbjct: 100 GPGRNRSYLEAVHINL-GSRSAWVCALVVYISLYGIGIAYTITSAISMRAINKSNCYHRE 158

Query: 62  GHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVI 121
           GH+AAC Y D  +ML+FGA+Q++ SQ PDFHNI+ LSV+AAVMSF YSFIG GLG+AK I
Sbjct: 159 GHDAACAYGDNSFMLVFGAIQIVTSQIPDFHNIEWLSVVAAVMSFCYSFIGLGLGLAKTI 218

Query: 122 GNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKK 181
           G+G + GS  G+ST+T  EK+WL++QALGDIAFAYPYSLI IEIQDTLKSPPP ++TMKK
Sbjct: 219 GDGKIKGSIEGISTSTVAEKVWLISQALGDIAFAYPYSLISIEIQDTLKSPPPESETMKK 278

Query: 182 ASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGY 241
           AST++I  TT+FYLFCGGFGYAAFGD+TPGNLLTGFGFYEPYWL+D ANA +V HLVGGY
Sbjct: 279 ASTLAITVTTLFYLFCGGFGYAAFGDDTPGNLLTGFGFYEPYWLVDFANACVVAHLVGGY 338

Query: 242 QVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIA 301
           Q+Y+QP+F   ++W  +KFP +GF+NN++  K PL+PAFR N  RLCFRT YV + T IA
Sbjct: 339 QIYTQPLFGMVDRWSAQKFPNSGFVNNDYVFKLPLLPAFRVNLFRLCFRTAYVGTTTGIA 398

Query: 302 MSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFG 361
           M FPYFNQVLGVIG + FWPL IYFPVEMYF Q  I  WTR W++L++FS+VC +V+ F 
Sbjct: 399 MIFPYFNQVLGVIGAMNFWPLAIYFPVEMYFVQRKIGVWTRMWLLLQIFSFVCLVVTVFA 458

Query: 362 LVGSIQGIISAKLS 375
            VGS++G+I+AKLS
Sbjct: 459 FVGSVEGLITAKLS 472

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122284|ref|XP_002330585.1| amino acid permease [Populus trichocarpa] gi|222872143|gb|EEF09274.1| amino acid permease [Populus trichocarpa]

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 240/356 (67%), Positives = 288/356 (80%)

Query: 19  GKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIF 78
           GKT  W C    +V +YGT IAY +T++ SMRAIQ+SNCYHREGH+A+CEY D  YML+F
Sbjct: 102 GKTQTWFCGLLQYVSMYGTGIAYVITTSTSMRAIQRSNCYHREGHKASCEYGDAIYMLLF 161

Query: 79  GAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTS 138
           GAVQ+++SQ PDFHN++ LSVIAA+MSF YSFIGFGLGVA+VI NG + GS +GVS  T+
Sbjct: 162 GAVQILVSQIPDFHNMEWLSVIAAIMSFTYSFIGFGLGVAQVIENGTIKGSIAGVSAATT 221

Query: 139 IEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCG 198
             K+WL  +ALGDIAFAYPYS+IL+EIQDTLKSPPP N+TMKKAS +SI  TT FYL CG
Sbjct: 222 ANKLWLAFEALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKKASMISIFITTFFYLCCG 281

Query: 199 GFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICE 258
            FGYAAFG+NTPGNLLTGFGF+EPYWL+DLANA +V+HLVGGYQ+YSQP+FA  E W   
Sbjct: 282 CFGYAAFGNNTPGNLLTGFGFFEPYWLVDLANACVVLHLVGGYQIYSQPVFAFVEGWFSR 341

Query: 259 KFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVI 318
           KFP +GF+NN    K PL+     N  RLCFRTVYV S TA+AM+FPYFNQVLGV+G + 
Sbjct: 342 KFPSSGFVNNFHSFKLPLIRPLHINLFRLCFRTVYVASTTAVAMAFPYFNQVLGVLGALN 401

Query: 319 FWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKL 374
           FWPL IYFPVEMYF Q  I AWTRKW++LR FS+ C +++  GL+GSI+G+ISAKL
Sbjct: 402 FWPLAIYFPVEMYFVQKKIGAWTRKWIVLRTFSFACLLITIAGLLGSIEGLISAKL 457

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146569|ref|XP_002336318.1| amino acid permease [Populus trichocarpa] gi|222834652|gb|EEE73115.1| amino acid permease [Populus trichocarpa]

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 239/369 (64%), Positives = 290/369 (78%), Gaps = 1/369 (0%)

Query: 2   GPKSPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHRE 61
           GPK     L+  +    GK NA  C  F  +G YGT IAYT+T+A SMRAIQKSNCYH+E
Sbjct: 64  GPKRNRSYLEA-VHETLGKRNALVCGVFAQIGFYGTGIAYTITTATSMRAIQKSNCYHKE 122

Query: 62  GHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVI 121
           GHEA CEY  + YML+FG VQ++LSQ PDFHN+Q LS++AA+MS +Y+ IGF LG A+VI
Sbjct: 123 GHEATCEYGGSLYMLLFGVVQVVLSQVPDFHNLQWLSIVAAIMSVSYASIGFALGFAQVI 182

Query: 122 GNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKK 181
            NGFV G  +GVS   + +K+W V+QALGDIAFAYPY LIL+EIQDTLKSPP  +++MKK
Sbjct: 183 ANGFVKGGIAGVSAYRAADKVWNVSQALGDIAFAYPYPLILLEIQDTLKSPPSESKSMKK 242

Query: 182 ASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGY 241
           AS ++++ TT FYL CGGFGYAAFG+ TPGNLLTGFGFYEPYWLID ANA IV+HL GGY
Sbjct: 243 ASIIAVVVTTFFYLCCGGFGYAAFGEKTPGNLLTGFGFYEPYWLIDFANACIVLHLAGGY 302

Query: 242 QVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIA 301
           QVYSQP+FA  E WI EK+PEN FLN     K P +P F+ N LRLCFRT+YVVS T IA
Sbjct: 303 QVYSQPLFAVIENWIAEKYPENRFLNKNLTCKFPRLPGFQLNLLRLCFRTIYVVSTTVIA 362

Query: 302 MSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFG 361
           + FPYFNQV+G++GG  FWPL +YFPVEMYFKQ NIEAWT KW+MLR FS +CF+V+ F 
Sbjct: 363 VMFPYFNQVIGLLGGFGFWPLAVYFPVEMYFKQKNIEAWTIKWIMLRAFSVICFLVTAFA 422

Query: 362 LVGSIQGII 370
           L+GS++G++
Sbjct: 423 LIGSVEGLM 431

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494348|ref|XP_002268981.2| PREDICTED: probable amino acid permease 7-like [Vitis vinifera]

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 233/361 (64%), Positives = 289/361 (80%), Gaps = 1/361 (0%)

Query: 15  INVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYY 74
           +N+ GK   W C    +V LYGT  AY +T+A  MRAIQ+SNCYH+EGH A+C Y DT+Y
Sbjct: 264 VNLGGKRQ-WFCGLLQYVNLYGTGTAYVITTATCMRAIQRSNCYHKEGHNASCAYGDTFY 322

Query: 75  MLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVS 134
           ML+FG +Q+++SQ PDFHN++ LS++AA+MSF+Y+ IG GLG AKV+ NG + GS  G+S
Sbjct: 323 MLLFGVIQIVMSQIPDFHNMEWLSIVAAIMSFSYASIGLGLGFAKVVENGMIKGSIEGIS 382

Query: 135 TTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFY 194
            + + +K+WLV QALGDIAFAYPYSLIL+EIQDTLK+PPP N+TMKKAS  +I+ TT FY
Sbjct: 383 ASNTADKIWLVFQALGDIAFAYPYSLILLEIQDTLKAPPPENKTMKKASMSAILITTFFY 442

Query: 195 LFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEK 254
           L CG FGYAAFGD+TPGNLLTGFGF+EPYWLID ANA I++HLVGGYQVYSQP+FA  E+
Sbjct: 443 LCCGCFGYAAFGDDTPGNLLTGFGFFEPYWLIDFANACIILHLVGGYQVYSQPVFAFVER 502

Query: 255 WICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVI 314
           W+  KFP +GF+N  + LK PL+PAF+ N LR+CFRT YV+S T IAM FPYFNQVLG++
Sbjct: 503 WVTRKFPNSGFVNKFYTLKLPLLPAFQMNLLRICFRTTYVISTTGIAMIFPYFNQVLGLL 562

Query: 315 GGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKL 374
           G + FWPL IYFPVEMY  Q  I AWTR W++LR FS VC +VS   LVGS++GIISAK+
Sbjct: 563 GALNFWPLAIYFPVEMYLVQKKIGAWTRTWIILRTFSLVCLLVSILTLVGSVEGIISAKV 622

Query: 375 S 375
           S
Sbjct: 623 S 623

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089993|emb|CBI39812.3| unnamed protein product [Vitis vinifera]

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 233/361 (64%), Positives = 289/361 (80%), Gaps = 1/361 (0%)

Query: 15  INVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYY 74
           +N+ GK   W C    +V LYGT  AY +T+A  MRAIQ+SNCYH+EGH A+C Y DT+Y
Sbjct: 99  VNLGGKRQ-WFCGLLQYVNLYGTGTAYVITTATCMRAIQRSNCYHKEGHNASCAYGDTFY 157

Query: 75  MLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVS 134
           ML+FG +Q+++SQ PDFHN++ LS++AA+MSF+Y+ IG GLG AKV+ NG + GS  G+S
Sbjct: 158 MLLFGVIQIVMSQIPDFHNMEWLSIVAAIMSFSYASIGLGLGFAKVVENGMIKGSIEGIS 217

Query: 135 TTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFY 194
            + + +K+WLV QALGDIAFAYPYSLIL+EIQDTLK+PPP N+TMKKAS  +I+ TT FY
Sbjct: 218 ASNTADKIWLVFQALGDIAFAYPYSLILLEIQDTLKAPPPENKTMKKASMSAILITTFFY 277

Query: 195 LFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEK 254
           L CG FGYAAFGD+TPGNLLTGFGF+EPYWLID ANA I++HLVGGYQVYSQP+FA  E+
Sbjct: 278 LCCGCFGYAAFGDDTPGNLLTGFGFFEPYWLIDFANACIILHLVGGYQVYSQPVFAFVER 337

Query: 255 WICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVI 314
           W+  KFP +GF+N  + LK PL+PAF+ N LR+CFRT YV+S T IAM FPYFNQVLG++
Sbjct: 338 WVTRKFPNSGFVNKFYTLKLPLLPAFQMNLLRICFRTTYVISTTGIAMIFPYFNQVLGLL 397

Query: 315 GGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKL 374
           G + FWPL IYFPVEMY  Q  I AWTR W++LR FS VC +VS   LVGS++GIISAK+
Sbjct: 398 GALNFWPLAIYFPVEMYLVQKKIGAWTRTWIILRTFSLVCLLVSILTLVGSVEGIISAKV 457

Query: 375 S 375
           S
Sbjct: 458 S 458

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586132|ref|XP_002533728.1| amino acid transporter, putative [Ricinus communis] gi|223526366|gb|EEF28659.1| amino acid transporter, putative [Ricinus communis]

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 231/355 (65%), Positives = 277/355 (78%)

Query: 19  GKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIF 78
           GKT  W C    +  ++GT IAY +T+A SM+AIQKSNCYHREGH A C Y DTY+ML+F
Sbjct: 100 GKTQTWFCGLLQYFSMFGTGIAYVITTATSMKAIQKSNCYHREGHRAPCSYEDTYFMLLF 159

Query: 79  GAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTS 138
           G VQ+++SQ P+FHN++ LSVIAA+MSF YSFIGFGLG AKVI NG + GS +GV     
Sbjct: 160 GFVQIVVSQIPNFHNMEWLSVIAAIMSFTYSFIGFGLGFAKVIENGRIKGSITGVPAANL 219

Query: 139 IEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCG 198
            +K+WL  +ALGDIAFAYPYSLIL+EIQDTLKS PP N+TMKK S ++I  TT FYL CG
Sbjct: 220 ADKLWLAFEALGDIAFAYPYSLILLEIQDTLKSSPPENKTMKKGSMIAIFVTTFFYLCCG 279

Query: 199 GFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICE 258
            FGYAAFG+NTPGNLLTGFGFYEPYWLID ANA IV+HLVGGYQ+YSQP+FA  E W   
Sbjct: 280 CFGYAAFGNNTPGNLLTGFGFYEPYWLIDFANACIVLHLVGGYQIYSQPVFAFVEGWFGN 339

Query: 259 KFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVI 318
           K+P + F+N  + +K P  P  + N LRLC RT YV + TAIAM+FPYFNQ+LGV+G + 
Sbjct: 340 KYPRSRFVNKFYTMKLPFSPPLQVNILRLCSRTAYVAATTAIAMTFPYFNQILGVLGALN 399

Query: 319 FWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAK 373
           FWPL IYFPVEMYF Q  I  WTRKW++LR FS+VC +VS  GL+GSI+G+ISAK
Sbjct: 400 FWPLAIYFPVEMYFVQKKIGPWTRKWIVLRTFSFVCLLVSIVGLIGSIEGLISAK 454

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357495243|ref|XP_003617910.1| Amino acid permease [Medicago truncatula] gi|355519245|gb|AET00869.1| Amino acid permease [Medicago truncatula]

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 229/357 (64%), Positives = 278/357 (77%)

Query: 19  GKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIF 78
           G      C   VHV LYGT  AY +TSA S+RAI KSNCYH+EGHEA C+Y DT YM++F
Sbjct: 111 GAIRGKVCGVLVHVSLYGTTCAYVITSATSIRAILKSNCYHKEGHEAHCKYGDTIYMILF 170

Query: 79  GAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTS 138
           G VQ+I+S  PD HN+  LSV+AAVMSF YS IG GLGV  VI NG +MGS +GV  +  
Sbjct: 171 GLVQVIMSFIPDLHNMALLSVVAAVMSFTYSSIGLGLGVTNVIENGRIMGSVAGVPASNI 230

Query: 139 IEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCG 198
            +K+WLV QALGDIAFAYPY+ IL+EIQDTL+SPP  N+TMKKAS ++I+ TT FYL C 
Sbjct: 231 ADKLWLVFQALGDIAFAYPYTTILLEIQDTLESPPAENKTMKKASMIAILITTFFYLCCA 290

Query: 199 GFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICE 258
            FGYAAFG+ TPGNLLTGFGFYEPYWLID ANA IV+HLVGGYQ+YSQP +   ++W   
Sbjct: 291 CFGYAAFGNQTPGNLLTGFGFYEPYWLIDFANACIVLHLVGGYQIYSQPTYTAADRWCSR 350

Query: 259 KFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVI 318
           K+P +GF+NN + LK PL+PAF+ N LR+CFRT YV+S T +A+ FPYFN+VLGV+G + 
Sbjct: 351 KYPNSGFVNNFYQLKLPLLPAFQLNMLRICFRTAYVISTTGLAIMFPYFNEVLGVLGALG 410

Query: 319 FWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS 375
           FWPLTIYFPVEMYF Q  IEAW+ KW++LR FS+VC +V+   LVGS++GIIS KLS
Sbjct: 411 FWPLTIYFPVEMYFVQNKIEAWSTKWIVLRTFSFVCLLVTVVSLVGSLEGIISEKLS 467

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569591|ref|XP_003552982.1| PREDICTED: probable amino acid permease 7-like [Glycine max]

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 239/376 (63%), Positives = 293/376 (77%), Gaps = 3/376 (0%)

Query: 1   MGPKSPSHNLKKEIINV-SGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYH 59
           +GP   S  L  + +N+  G+ N+  C+ FV+V LYG  IAY +T+AISMRAIQKSNC  
Sbjct: 74  LGPHRSSSYL--DAVNLHKGEGNSRFCAVFVNVSLYGFGIAYVITAAISMRAIQKSNCSQ 131

Query: 60  REGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAK 119
             G+E  C + D Y+MLIFGA+Q++LSQ P+FHNIQ LS++AA+MSFAY+FIG GL V +
Sbjct: 132 DNGNEVTCGFGDGYFMLIFGAMQVLLSQIPNFHNIQWLSILAAIMSFAYAFIGMGLSVGQ 191

Query: 120 VIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTM 179
           V  NG   GS  G+ T++ IEK+WLVAQALGDIAF+YP+S+ILIEIQDTLKSPPP N TM
Sbjct: 192 VTENGHAEGSIEGIPTSSGIEKLWLVAQALGDIAFSYPFSVILIEIQDTLKSPPPENVTM 251

Query: 180 KKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVG 239
           K+AST+S+I TT FYL CG FGYAAFG++TPGNLLTGF  Y+ +WL+D ANA IVIHLVG
Sbjct: 252 KRASTISVIVTTFFYLCCGCFGYAAFGNDTPGNLLTGFALYKKHWLVDFANACIVIHLVG 311

Query: 240 GYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTA 299
            YQVYSQP+FA+ E W+  KFP++ F+N  + LK PL+PAF  N LRL FRT YV S T 
Sbjct: 312 AYQVYSQPLFANVENWLRFKFPDSEFVNRTYSLKLPLLPAFPLNFLRLTFRTAYVASTTG 371

Query: 300 IAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVST 359
           IAM FPYFNQ+LGV+ G+I++PL+IYFPVEMY    NIEAWT KWVMLR FS V F+V  
Sbjct: 372 IAMIFPYFNQILGVLAGIIYYPLSIYFPVEMYLSLGNIEAWTAKWVMLRTFSIVGFLVGL 431

Query: 360 FGLVGSIQGIISAKLS 375
           F LVGSI+GI+SAKLS
Sbjct: 432 FTLVGSIEGIVSAKLS 447

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122280|ref|XP_002330584.1| amino acid permease [Populus trichocarpa] gi|222872142|gb|EEF09273.1| amino acid permease [Populus trichocarpa]

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 224/352 (63%), Positives = 277/352 (78%)

Query: 19  GKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIF 78
           GKT    C  F ++ +YG  IAY +T++  M AI++SNCYH +GH A C++ D   ML+F
Sbjct: 89  GKTQTCLCGMFQYLYMYGIGIAYVITTSTCMSAIRRSNCYHDKGHAAPCKHKDIPNMLMF 148

Query: 79  GAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTS 138
           GAVQ++ SQ PDFH+I+ LSVIAA+MSFAYSF GFGLG AKVI NG + GS +G   +T 
Sbjct: 149 GAVQIVASQIPDFHSIKWLSVIAAIMSFAYSFTGFGLGFAKVIENGMIKGSIAGAPASTR 208

Query: 139 IEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCG 198
            +K+WL  QALGDIA++YPY+L+L+EIQDTLKSPPP N+TMKKAS +++I TT FYL CG
Sbjct: 209 AKKLWLAFQALGDIAYSYPYALVLLEIQDTLKSPPPENKTMKKASMIAMILTTFFYLCCG 268

Query: 199 GFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICE 258
            FGYAAFG+NTPGNLLTGFGFYEPYWLID ANA +V+HLVGGYQ++SQP+F   E+W  E
Sbjct: 269 CFGYAAFGNNTPGNLLTGFGFYEPYWLIDFANACVVLHLVGGYQLFSQPVFEFAERWFSE 328

Query: 259 KFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVI 318
           KFP NGF+N  +  K PL+P+F+ N  R+CFRT YVVS TA+A  FPYFNQVLG++G + 
Sbjct: 329 KFPSNGFVNKFYNFKLPLLPSFQINLFRICFRTAYVVSTTAVAAVFPYFNQVLGLLGALN 388

Query: 319 FWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGII 370
           FWPL IYFPVEMYF Q  IEAWTRKW++LR FS  C +VS  GL+GSI+GII
Sbjct: 389 FWPLAIYFPVEMYFVQNKIEAWTRKWIVLRTFSLACLLVSIVGLIGSIEGII 440

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	375
TAIR|locus:2172868	467	AAP7 "amino acid permease 7" [	0.946	0.760	0.562	1.9e-113
TAIR|locus:2184707	493	AAP2 "amino acid permease 2" [	0.92	0.699	0.517	3.7e-103
TAIR|locus:2031402	476	AAP3 "amino acid permease 3" [	0.938	0.739	0.516	9.1e-100
TAIR|locus:2201871	475	AAP8 "amino acid permease 8" [	0.973	0.768	0.497	4.1e-97
TAIR|locus:2163981	466	AAP4 "amino acid permease 4" [	0.92	0.740	0.491	1.6e-95
TAIR|locus:2168912	481	AAP6 "amino acid permease 6" [	0.925	0.721	0.497	3.3e-95
TAIR|locus:2205876	480	AAP5 "amino acid permease 5" [	0.917	0.716	0.519	6.8e-95
TAIR|locus:2016600	485	AAP1 "amino acid permease 1" [	0.925	0.715	0.488	3.8e-94
UNIPROTKB|Q85V22	441	ht "Histidine amino acid trans	0.573	0.487	0.372	1.4e-42
TAIR|locus:2008605	441	AT1G67640 "AT1G67640" [Arabido	0.562	0.478	0.330	7.3e-38

TAIR|locus:2172868 AAP7 "amino acid permease 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1119 (399.0 bits), Expect = 1.9e-113, P = 1.9e-113
 Identities = 202/359 (56%), Positives = 260/359 (72%)

Query:    19 GKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDT--YYML 76
             GK N   C   V++ L+G  IAYT+  A   RAI KSNCYHR GH A C Y D   Y+M+
Sbjct:   107 GKKNEIVCGVVVYISLFGCGIAYTIVIATCSRAIMKSNCYHRNGHNATCSYGDNNNYFMV 166

Query:    77 IFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTT 136
             +FG  Q+ +SQ P+FHN+  LS++AA+MSF YSFIG GL + K+I N  + GS  G+   
Sbjct:   167 LFGLTQIFMSQIPNFHNMVWLSLVAAIMSFTYSFIGIGLALGKIIENRKIEGSIRGIPAE 226

Query:   137 TSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLF 196
                EK+W+V QALG+IAF+YP+S+IL+EIQDTL+SPP   QTMKKAST+++   T F+  
Sbjct:   227 NRGEKVWIVFQALGNIAFSYPFSIILLEIQDTLRSPPAEKQTMKKASTVAVFIQTFFFFC 286

Query:   197 CGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWI 256
             CG FGYAAFGD+TPGNLLTGFGFYEP+WL+D ANA IV+HLVGGYQVYSQPIFA  E+ +
Sbjct:   287 CGCFGYAAFGDSTPGNLLTGFGFYEPFWLVDFANACIVLHLVGGYQVYSQPIFAAAERSL 346

Query:   257 CEKFPENGFLNNEFFLKPPLM--PAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVI 314
              +K+PEN F+   +  K PL+     R NP+R+C RT+YV+  T +A+ FPYFN+VLGV+
Sbjct:   347 TKKYPENKFIARFYGFKLPLLRGETVRLNPMRMCLRTMYVLITTGVAVMFPYFNEVLGVV 406

Query:   315 GGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAK 373
             G + FWPL +YFPVEM   Q  I +WTR W++LR FS+VC +V    LVGSI G++ AK
Sbjct:   407 GALAFWPLAVYFPVEMCILQKKIRSWTRPWLLLRGFSFVCLLVCLLSLVGSIYGLVGAK 465

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IDA

GO:0006865 "amino acid transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2184707 AAP2 "amino acid permease 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1022 (364.8 bits), Expect = 3.7e-103, P = 3.7e-103
 Identities = 180/348 (51%), Positives = 250/348 (71%)

Query:    26 CSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLIL 85
             C    ++ L+G AI YT+ ++ISM AI++SNC+H+ G +  C  S   YM++FG  +++L
Sbjct:   133 CGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHKSGGKDPCHMSSNPYMIVFGVAEILL 192

Query:    86 SQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVS--TTTSIEKMW 143
             SQ PDF  I  +S++AAVMSF YS IG  LG+ +V  NG   GS +G+S  T T  +K+W
Sbjct:   193 SQVPDFDQIWWISIVAAVMSFTYSAIGLALGIVQVAANGVFKGSLTGISIGTVTQTQKIW 252

Query:   144 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYA 203
                QALGDIAFAY YS++LIEIQDT++SPP  ++TMKKA+ +SI  TTIFY+ CG  GYA
Sbjct:   253 RTFQALGDIAFAYSYSVVLIEIQDTVRSPPAESKTMKKATKISIAVTTIFYMLCGSMGYA 312

Query:   204 AFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPEN 263
             AFGD  PGNLLTGFGFY P+WL+D+ANA IV+HLVG YQV++QPIFA  EK + E++P+N
Sbjct:   313 AFGDAAPGNLLTGFGFYNPFWLLDIANAAIVVHLVGAYQVFAQPIFAFIEKSVAERYPDN 372

Query:   264 GFLNNEFFLK-PPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPL 322
              FL+ EF ++ P     ++ N  R+ +R+ +VV+ T I+M  P+FN V+G++G + FWPL
Sbjct:   373 DFLSKEFEIRIPGFKSPYKVNVFRMVYRSGFVVTTTVISMLMPFFNDVVGILGALGFWPL 432

Query:   323 TIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGII 370
             T+YFPVEMY KQ  +E W+ +WV L++ S  C ++S    VGSI G++
Sbjct:   433 TVYFPVEMYIKQRKVEKWSTRWVCLQMLSVACLVISVVAGVGSIAGVM 480

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=IGI;ISS

GO:0016020 "membrane" evidence=ISS

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

GO:0015800 "acidic amino acid transport" evidence=IDA

GO:0015804 "neutral amino acid transport" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=TAS

TAIR|locus:2031402 AAP3 "amino acid permease 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 990 (353.6 bits), Expect = 9.1e-100, P = 9.1e-100
 Identities = 183/354 (51%), Positives = 242/354 (68%)

Query:    19 GKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIF 78
             G      C    ++ ++G AI YT+ SAISM AI++SNC+H+ G +  C  +   YM+ F
Sbjct:   110 GGVKVTLCGIVQYLNIFGVAIGYTIASAISMMAIKRSNCFHKSGGKDPCHMNSNPYMIAF 169

Query:    79 GAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVS--TT 136
             G VQ++ SQ PDF  +  LS++AAVMSF YS  G  LG+A+V+ NG V GS +G+S    
Sbjct:   170 GLVQILFSQIPDFDQLWWLSILAAVMSFTYSSAGLALGIAQVVVNGKVKGSLTGISIGAV 229

Query:   137 TSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLF 196
             T  +K+W   QALGDIAFAY YS+ILIEIQDT+KSPP   +TMKKA+ +S+  TT+FY+ 
Sbjct:   230 TETQKIWRTFQALGDIAFAYSYSIILIEIQDTVKSPPSEEKTMKKATLVSVSVTTMFYML 289

Query:   197 CGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWI 256
             CG  GYAAFGD +PGNLLTGFGFY PYWL+D+ANA IVIHL+G YQVY QP+FA  EK  
Sbjct:   290 CGCMGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLIGAYQVYCQPLFAFIEKQA 349

Query:   257 CEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGG 316
               +FP++ F+  +  +  P     R N  RL +RTV+V+  T I+M  P+FN V+G++G 
Sbjct:   350 SIQFPDSEFIAKDIKIPIPGFKPLRLNVFRLIWRTVFVIITTVISMLLPFFNDVVGLLGA 409

Query:   317 VIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGII 370
             + FWPLT+YFPVEMY  Q  I  W+ +WV L+VFS  C +VS     GSI G++
Sbjct:   410 LGFWPLTVYFPVEMYIAQKKIPRWSTRWVCLQVFSLGCLVVSIAAAAGSIAGVL 463

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015802 "basic amino acid transport" evidence=RCA;IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2201871 AAP8 "amino acid permease 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 965 (344.8 bits), Expect = 4.1e-97, P = 4.1e-97
 Identities = 184/370 (49%), Positives = 249/370 (67%)

Query:     7 SHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAA 66
             ++N    + +  G      C    +V L G  I YT+T++IS+ AI KSNCYH +GH+A 
Sbjct:    96 NYNYMGVVRSYLGGKKVQLCGVAQYVNLVGVTIGYTITASISLVAIGKSNCYHDKGHKAK 155

Query:    67 CEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKV----IG 122
             C  S+  YM  FG VQ+ILSQ P+FH +  LS+IAAVMSF+Y+ IG GL +A V    IG
Sbjct:   156 CSVSNYPYMAAFGIVQIILSQLPNFHKLSFLSIIAAVMSFSYASIGIGLAIATVASGKIG 215

Query:   123 NGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKA 182
                + G+  GV  T S EK+W + QA+GDIAF+Y ++ ILIEIQDTL+S PP N+ MK+A
Sbjct:   216 KTELTGTVIGVDVTAS-EKVWKLFQAIGDIAFSYAFTTILIEIQDTLRSSPPENKVMKRA 274

Query:   183 STMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQ 242
             S + + TTT+FY+ CG  GYAAFG+  PG+ LT FGFYEPYWLID ANA I +HL+G YQ
Sbjct:   275 SLVGVSTTTVFYILCGCIGYAAFGNQAPGDFLTDFGFYEPYWLIDFANACIALHLIGAYQ 334

Query:   243 VYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAM 302
             VY+QP F   E+   +K+P++ F+N E+  K PL+   R N  RL +RT YVV  T +AM
Sbjct:   335 VYAQPFFQFVEENCNKKWPQSNFINKEYSSKVPLLGKCRVNLFRLVWRTCYVVLTTFVAM 394

Query:   303 SFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGL 362
              FP+FN +LG++G   FWPLT+YFPV M+  Q  ++ ++R+W+ L +   VC IVS    
Sbjct:   395 IFPFFNAILGLLGAFAFWPLTVYFPVAMHIAQAKVKKYSRRWLALNLLVLVCLIVSALAA 454

Query:   363 VGSIQGIISA 372
             VGSI G+I++
Sbjct:   455 VGSIIGLINS 464

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=IGI;ISS

GO:0006865 "amino acid transport" evidence=IGI

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2163981 AAP4 "amino acid permease 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 950 (339.5 bits), Expect = 1.6e-95, P = 1.6e-95
 Identities = 171/348 (49%), Positives = 239/348 (68%)

Query:    26 CSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLIL 85
             C    ++ L+G  + YT+ ++ISM AI++SNC+H  G +  C  S   YM++FG  +++L
Sbjct:   106 CGLIQYLNLFGITVGYTIAASISMMAIKRSNCFHESGGKNPCHMSSNPYMIMFGVTEILL 165

Query:    86 SQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVS--TTTSIEKMW 143
             SQ  DF  I  LS++AA+MSF YS IG  LG+ +V  NG V GS +G+S    T  +K+W
Sbjct:   166 SQIKDFDQIWWLSIVAAIMSFTYSAIGLALGIIQVAANGVVKGSLTGISIGAVTQTQKIW 225

Query:   144 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYA 203
                QALGDIAFAY YS++LIEIQDT++SPP  ++TMK A+ +SI  TT FY+ CG  GYA
Sbjct:   226 RTFQALGDIAFAYSYSVVLIEIQDTVRSPPAESKTMKIATRISIAVTTTFYMLCGCMGYA 285

Query:   204 AFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPEN 263
             AFGD  PGNLLTGFGFY P+WL+D+ANA IVIHLVG YQV++QPIFA  EK    +FP++
Sbjct:   286 AFGDKAPGNLLTGFGFYNPFWLLDVANAAIVIHLVGAYQVFAQPIFAFIEKQAAARFPDS 345

Query:   264 GFLNNEFFLK-PPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPL 322
               +  E+ ++ P     ++ N  R  +R+ +VV  T I+M  P+FN V+G++G + FWPL
Sbjct:   346 DLVTKEYEIRIPGFRSPYKVNVFRAVYRSGFVVLTTVISMLMPFFNDVVGILGALGFWPL 405

Query:   323 TIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGII 370
             T+YFPVEMY +Q  +E W+ KWV L++ S  C +++    VGSI G++
Sbjct:   406 TVYFPVEMYIRQRKVERWSMKWVCLQMLSCGCLMITLVAGVGSIAGVM 453

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0006865 "amino acid transport" evidence=RCA;TAS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IDA

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IDA

GO:0015399 "primary active transmembrane transporter activity" evidence=IDA

TAIR|locus:2168912 AAP6 "amino acid permease 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 947 (338.4 bits), Expect = 3.3e-95, P = 3.3e-95
 Identities = 175/352 (49%), Positives = 237/352 (67%)

Query:    26 CSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLIL 85
             C    +  L G  I YT+T++ISM A+++SNC+H+ GH   C  S+T +M+IF  +Q+IL
Sbjct:   120 CGLAQYGNLIGITIGYTITASISMVAVKRSNCFHKNGHNVKCATSNTPFMIIFAIIQIIL 179

Query:    86 SQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNG-FVMGSFSGVSTTTSI---EK 141
             SQ P+FHN+  LS++AAVMSF Y+ IG GL +AK  G G  V  + +GV+    +   EK
Sbjct:   180 SQIPNFHNLSWLSILAAVMSFCYASIGVGLSIAKAAGGGEHVRTTLTGVTVGIDVSGAEK 239

Query:   142 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPA-NQTMKKASTMSIITTTIFYLFCGGF 200
             +W   QA+GDIAFAY YS +LIEIQDTLK+ PP+ N+ MK+AS + + TTT FY+ CG  
Sbjct:   240 IWRTFQAIGDIAFAYAYSTVLIEIQDTLKAGPPSENKAMKRASLVGVSTTTFFYMLCGCV 299

Query:   201 GYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKF 260
             GYAAFG++ PGN LTGFGFYEP+WLID AN  I +HL+G YQV+ QPIF   E    +++
Sbjct:   300 GYAAFGNDAPGNFLTGFGFYEPFWLIDFANVCIAVHLIGAYQVFCQPIFQFVESQSAKRW 359

Query:   261 PENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFW 320
             P+N F+  E+ +  P    F  N LRL +RT YVV    +AM FP+FN  LG+IG   FW
Sbjct:   360 PDNKFITGEYKIHVPCCGDFSINFLRLVWRTSYVVVTAVVAMIFPFFNDFLGLIGAASFW 419

Query:   321 PLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISA 372
             PLT+YFP+EM+  Q  I  ++  W  L++ S+ CFIVS     GS+QG+I +
Sbjct:   420 PLTVYFPIEMHIAQKKIPKFSFTWTWLKILSWTCFIVSLVAAAGSVQGLIQS 471

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IDA

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IDA

GO:0015810 "aspartate transport" evidence=IDA

GO:0015827 "tryptophan transport" evidence=IDA

TAIR|locus:2205876 AAP5 "amino acid permease 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 944 (337.4 bits), Expect = 6.8e-95, P = 6.8e-95
 Identities = 185/356 (51%), Positives = 237/356 (66%)

Query:    26 CSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLIL 85
             C    +V L+GTAI YT+ SAIS+ AIQ+++C    G    C  +   YM+ FG VQ+I 
Sbjct:   115 CGVVQYVNLFGTAIGYTIASAISLVAIQRTSCQQMNGPNDPCHVNGNVYMIAFGIVQIIF 174

Query:    86 SQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVS--------TTT 137
             SQ PDF  +  LS++AAVMSFAYS IG GLGV+KV+ N  + GS +GV+        T T
Sbjct:   175 SQIPDFDQLWWLSIVAAVMSFAYSAIGLGLGVSKVVENKEIKGSLTGVTVGTVTLSGTVT 234

Query:   138 SIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFC 197
             S +K+W   Q+LG+IAFAY YS+ILIEIQDT+KSPP    TM+KA+ +S+  TT+FY+ C
Sbjct:   235 SSQKIWRTFQSLGNIAFAYSYSMILIEIQDTVKSPPAEVNTMRKATFVSVAVTTVFYMLC 294

Query:   198 GGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWIC 257
             G  GYAAFGDN PGNLL   GF  PYWL+D+AN  IVIHLVG YQVY QP+FA  EK   
Sbjct:   295 GCVGYAAFGDNAPGNLLAHGGFRNPYWLLDIANLAIVIHLVGAYQVYCQPLFAFVEKEAS 354

Query:   258 EKFPENGFLNNEFFLKPPLMPA--FRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIG 315
              +FPE+ F+  E  +K  L P   F  N  RL +RT +V++ T I+M  P+FN V+G++G
Sbjct:   355 RRFPESEFVTKE--IKIQLFPGKPFNLNLFRLVWRTFFVMTTTLISMLMPFFNDVVGLLG 412

Query:   316 GVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIIS 371
              + FWPLT+YFPVEMY  Q N+  W  KWV L+V S  C  VS     GS+ GI+S
Sbjct:   413 AIGFWPLTVYFPVEMYIAQKNVPRWGTKWVCLQVLSVTCLFVSVAAAAGSVIGIVS 468

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;TAS

GO:0016020 "membrane" evidence=ISS

GO:0015174 "basic amino acid transmembrane transporter activity" evidence=IDA

GO:0015802 "basic amino acid transport" evidence=TAS

GO:0015809 "arginine transport" evidence=IMP

GO:0006865 "amino acid transport" evidence=RCA

TAIR|locus:2016600 AAP1 "amino acid permease 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 937 (334.9 bits), Expect = 3.8e-94, P = 3.8e-94
 Identities = 171/350 (48%), Positives = 235/350 (67%)

Query:    26 CSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLIL 85
             C    +  L G  + YT+T++IS+ A+ KSNC+H +GH A C  S+  YM +FG +Q+IL
Sbjct:   124 CGVAQYGNLIGVTVGYTITASISLVAVGKSNCFHDKGHTADCTISNYPYMAVFGIIQVIL 183

Query:    86 SQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVST---TTSIEKM 142
             SQ P+FH +  LS++AAVMSF Y+ IG GL +A V G      S +G +     T+ +K+
Sbjct:   184 SQIPNFHKLSFLSIMAAVMSFTYATIGIGLAIATVAGGKVGKTSMTGTAVGVDVTAAQKI 243

Query:   143 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGY 202
             W   QA+GDIAFAY Y+ +LIEIQDTL+S P  N+ MK+AS + + TTT FY+ CG  GY
Sbjct:   244 WRSFQAVGDIAFAYAYATVLIEIQDTLRSSPAENKAMKRASLVGVSTTTFFYILCGCIGY 303

Query:   203 AAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPE 262
             AAFG+N PG+ LT FGF+EP+WLID ANA I +HL+G YQV++QPIF   EK     +P+
Sbjct:   304 AAFGNNAPGDFLTDFGFFEPFWLIDFANACIAVHLIGAYQVFAQPIFQFVEKKCNRNYPD 363

Query:   263 NGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPL 322
             N F+ +E+ +  P +  F  +  RL +RT YVV  T +AM FP+FN +LG+IG   FWPL
Sbjct:   364 NKFITSEYSVNVPFLGKFNISLFRLVWRTAYVVITTVVAMIFPFFNAILGLIGAASFWPL 423

Query:   323 TIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISA 372
             T+YFPVEM+  Q  I+ ++ +W+ L+   YVC IVS     GSI G+IS+
Sbjct:   424 TVYFPVEMHIAQTKIKKYSARWIALKTMCYVCLIVSLLAAAGSIAGLISS 473

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IMP

GO:0009624 "response to nematode" evidence=IEP

GO:0043090 "amino acid import" evidence=IMP

GO:0006865 "amino acid transport" evidence=RCA

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IGI

GO:0015804 "neutral amino acid transport" evidence=IGI

UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)]

 Score = 340 (124.7 bits), Expect = 1.4e-42, Sum P(2) = 1.4e-42
 Identities = 86/231 (37%), Positives = 125/231 (54%)

Query:    36 GTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSD-TYYMLIFGAVQLILSQAPDFHNI 94
             G  I Y VT   S++      C   EGH   C+    TY+++IF +V  +LSQ P+F++I
Sbjct:   122 GVNIVYMVTGGKSLKKFHDVLC---EGH--GCKNIKLTYFIMIFASVHFVLSQLPNFNSI 176

Query:    95 QSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAF 154
               +S+ AAVMS +YS I +G  V K    G V      +  TTS  K++    ALGD+AF
Sbjct:   177 SGVSLAAAVMSLSYSTIAWGASVDK----GKVADVDYHLRATTSTGKVFGFFSALGDVAF 232

Query:   155 AYPYSLILIEIQDTLKSPP--PANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGN 212
             AY    +++EIQ T+ S P  P+ + M K   ++ I   + Y      GY AFG++   N
Sbjct:   233 AYAGHNVVLEIQATIPSTPEKPSKKPMWKGVVVAYIIVALCYFPVALVGYWAFGNHVDDN 292

Query:   213 LLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEK--FP 261
             +L       P WLI LAN  +VIH++G YQ+Y+ P+F   E  + +K  FP
Sbjct:   293 ILITLS--RPKWLIALANMMVVIHVIGSYQIYAMPVFDMIETVLVKKLRFP 341

GO:0009536 "plastid" evidence=IC

TAIR|locus:2008605 AT1G67640 "AT1G67640" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 7.3e-38, Sum P(2) = 7.3e-38
 Identities = 75/227 (33%), Positives = 121/227 (53%)

Query:    36 GTAIAYTVTSAISMRAIQKSNCYHREGHEAACE-YSDTYYMLIFGAVQLILSQAPDFHNI 94
             G  I Y VT   S++ I    C         C+    TY+++IF ++  +L+  P+F++I
Sbjct:   124 GVDIVYMVTGGKSLKKIHDLLC-------TDCKNIRTTYWIMIFASIHFVLAHLPNFNSI 176

Query:    95 QSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAF 154
               +S+ AAVMS +YS I +   V K +        +S  ++TTS   ++    ALGD+AF
Sbjct:   177 SIVSLAAAVMSLSYSTIAWATSVKKGVHPNV---DYSSRASTTS-GNVFNFLNALGDVAF 232

Query:   155 AYPYSLILIEIQDTLKSPP--PANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGN 212
             AY    +++EIQ T+ S P  P+   M K   ++ I   I Y       Y  FG++   N
Sbjct:   233 AYAGHNVVLEIQATIPSTPEKPSKIAMWKGVVVAYIVVAICYFPVAFVCYYIFGNSVDDN 292

Query:   213 LLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEK 259
             +L      +P WLI +ANAF+V+H++G YQ+Y+ P+F   E ++ +K
Sbjct:   293 IL--MTLEKPIWLIAIANAFVVVHVIGSYQIYAMPVFDMLETFLVKK 337

GO:0005275 "amine transmembrane transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FF99	AAP7_ARATH	No assigned EC number	0.5626	0.9466	0.7601	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00033459001 SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (399 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	375
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	1e-63
COG0814	415	COG0814, SdaC, Amino acid permeases [Amino acid tr	0.004

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score =  208 bits (531), Expect = 1e-63
 Identities = 89/358 (24%), Positives = 151/358 (42%), Gaps = 37/358 (10%)

Query: 19  GKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIF 78
           G        F + V L+G  I+Y + +  ++ AI  S           C  S  Y+++IF
Sbjct: 81  GPKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFFDT-------CHISLVYFIIIF 133

Query: 79  GAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVS---- 134
           G + + LS  P+   +  LS++AAV S           +  ++ +   +G  +       
Sbjct: 134 GLIFIPLSFIPNLSALSILSLVAAVSSLY---------IVILVLSVAELGVLTAQGVGSL 184

Query: 135 TTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFY 194
              +  K+  +  A+G I FA+    +L+ IQ+T+KSP    + M K    +II  T+ Y
Sbjct: 185 GAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPS-KFKAMTKVLLTAIIIVTVLY 243

Query: 195 LFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEK 254
           +  G  GY AFG+N  GN+L         WLID+AN  +V+HL+  Y + + PI    E 
Sbjct: 244 ILVGLVGYLAFGNNVKGNILLNLPK--SDWLIDIANLLLVLHLLLSYPLQAFPIRQIVEN 301

Query: 255 WICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVI 314
            +  K       +N                LR+  R+  VV    IA+S P+    L ++
Sbjct: 302 LLFRKG--ASGKHNPKSKL-----------LRVVIRSGLVVITYLIAISVPFLGDFLSLV 348

Query: 315 GGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRV-FSYVCFIVSTFGLVGSIQGIIS 371
           G     PLT   P   + K    +  + + +        +C ++    +   + G+I 
Sbjct: 349 GATSGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGLLLMAYGVAGLII 406

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism]

 Score = 38.8 bits (91), Expect = 0.004
 Identities = 43/279 (15%), Positives = 87/279 (31%), Gaps = 42/279 (15%)

Query: 96  SLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFA 155
           SL V   V+      +                 S S                A+    F+
Sbjct: 155 SLLVFGKVIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLL---------AIPVFVFS 205

Query: 156 YPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLT 215
           + +   +  + + ++        ++KA  +  +   + Y+  G F +  FG    GN+L 
Sbjct: 206 FGFHGNIPSLVNYMRKNSKKA--VRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILA 263

Query: 216 GFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPP 275
                +   L+      I   ++      +  IFA F            FL     L   
Sbjct: 264 AKE--QNISLLSALAGVINSPILS----IALNIFALFAI-------ATSFLGVYLGLFEG 310

Query: 276 LMPAFRW-----NPLRLCFRTVYVVSVTAI------AMSFPYFNQVLGVIGGVIFWPLTI 324
           L   F+         +    T     + A+      A++  Y   ++  IG  I   L  
Sbjct: 311 LADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLF 370

Query: 325 YFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLV 363
             P ++ +K   ++ +   +++L        +V  FG++
Sbjct: 371 IKPRKLIYKLPALKVYGGNFLLL-------LLVLLFGIL 402

Length = 415

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	375
KOG1303	437	consensus Amino acid transporters [Amino acid tran	100.0
PTZ00206	467	amino acid transporter; Provisional	100.0
KOG1304	449	consensus Amino acid transporters [Amino acid tran	100.0
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	100.0
PLN03074	473	auxin influx permease; Provisional	100.0
KOG1305	411	consensus Amino acid transporter protein [Amino ac	100.0
KOG4303	524	consensus Vesicular inhibitory amino acid transpor	100.0
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	99.91
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	99.59
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	99.43
PRK15132	403	tyrosine transporter TyrP; Provisional	99.39
PRK13629	443	threonine/serine transporter TdcC; Provisional	99.29
PRK10483	414	tryptophan permease; Provisional	99.28
TIGR00814	397	stp serine transporter. The HAAAP family includes	99.23
PRK09664	415	tryptophan permease TnaB; Provisional	99.21
PRK11021	410	putative transporter; Provisional	98.4
PRK10655	438	potE putrescine transporter; Provisional	98.4
PRK10746	461	putative transport protein YifK; Provisional	98.37
PRK10644	445	arginine:agmatin antiporter; Provisional	98.29
PRK10249	458	phenylalanine transporter; Provisional	98.26
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	98.26
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	98.18
TIGR00913	478	2A0310 amino acid permease (yeast).	98.17
PRK15049	499	L-asparagine permease; Provisional	98.17
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	98.14
TIGR00909	429	2A0306 amino acid transporter.	98.12
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	98.12
PRK10238	456	aromatic amino acid transporter; Provisional	98.11
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	98.1
PRK10580	457	proY putative proline-specific permease; Provision	98.09
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	98.08
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	98.07
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	98.07
PRK10197	446	gamma-aminobutyrate transporter; Provisional	98.06
TIGR00930	953	2a30 K-Cl cotransporter.	98.02
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	98.02
PRK11357	445	frlA putative fructoselysine transporter; Provisio	97.95
PRK11387	471	S-methylmethionine transporter; Provisional	97.91
TIGR00906	557	2A0303 cationic amino acid transport permease.	97.88
TIGR00907	482	2A0304 amino acid permease (GABA permease).	97.85
KOG1287	479	consensus Amino acid transporters [Amino acid tran	97.8
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	97.75
TIGR00911	501	2A0308 L-type amino acid transporter.	97.54
COG0531	466	PotE Amino acid transporters [Amino acid transport	97.47
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	97.44
PRK10836	489	lysine transporter; Provisional	97.43
TIGR00912	359	2A0309 spore germination protein (amino acid perme	97.41
PRK15238	496	inner membrane transporter YjeM; Provisional	97.22
TIGR00800	442	ncs1 NCS1 nucleoside transporter family. The NCS1	96.8
TIGR02358	386	thia_cytX probable hydroxymethylpyrimidine transpo	96.78
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	96.67
COG3949	349	Uncharacterized membrane protein [Function unknown	96.62
PRK09442	483	panF sodium/panthothenate symporter; Provisional	96.6
PRK11375	484	allantoin permease; Provisional	96.59
COG1457	442	CodB Purine-cytosine permease and related proteins	96.3
KOG1289	550	consensus Amino acid transporters [Amino acid tran	96.25
COG0591	493	PutP Na+/proline symporter [Amino acid transport a	96.19
TIGR02119	471	panF sodium/pantothenate symporter. Pantothenate (	96.13
PF03845	320	Spore_permease: Spore germination protein; InterPr	96.1
PRK11017	404	codB cytosine permease; Provisional	95.33
PRK12488	549	acetate permease; Provisional	94.98
TIGR00813	407	sss transporter, SSS family. have different number	94.74
PF00474	406	SSF: Sodium:solute symporter family; InterPro: IPR	94.26
KOG1286	554	consensus Amino acid transporters [Amino acid tran	93.89
PRK15419	502	proline:sodium symporter PutP; Provisional	93.54
TIGR02121	487	Na_Pro_sym sodium/proline symporter. This family c	92.19
TIGR02711	549	symport_actP cation/acetate symporter ActP. Member	91.74
COG0833	541	LysP Amino acid transporters [Amino acid transport	91.2
PRK09395	551	actP acetate permease; Provisional	81.41
COG1914	416	MntH Mn2+ and Fe2+ transporters of the NRAMP famil	80.51

>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=1.1e-49  Score=385.58  Aligned_cols=335  Identities=36%  Similarity=0.594  Sum_probs=292.4

Q ss_pred             CCCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHH
Q 017226            5 SPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLI   84 (375)
Q Consensus         5 ~~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~lp   84 (375)
                      +|..+|.|+++++||+++++++.+++.+.++|+|+.|++..+|++..+.+..+.+..      ..+.+.|+++++++++|
T Consensus       102 ~r~~~Y~dl~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~------~l~~~~f~iif~~i~~~  175 (437)
T KOG1303|consen  102 KRRYRYPDLGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN------SLDKQYFIIIFGLIVLP  175 (437)
T ss_pred             ccCCChHHHHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc------cccceehhhhHHHHHHH
Confidence            455889999999999999999999999999999999999999999999998664321      23357899999999999


Q ss_pred             hhcCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhHHHHHHHHHhhhHHhhcCCchhHHH
Q 017226           85 LSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIE  164 (375)
Q Consensus        85 l~~~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~  164 (375)
                      ++++||++.+++.|..|+++++.|..+.+++++.++...+..+....+   ..+...   .++++|+++|||.+|..+||
T Consensus       176 ~s~lp~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~---~~~~~~---~f~a~g~iaFaf~gH~v~pe  249 (437)
T KOG1303|consen  176 LSQLPNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLD---LGTIPT---VFTALGIIAFAYGGHAVLPE  249 (437)
T ss_pred             HHHCCCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCccc---CCCCcc---hhhhhhheeeeecCCeeeee
Confidence            999999999999999999999999888888888776543221111111   111111   18999999999999999999


Q ss_pred             HHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhccccccccCccCCccccccCCCCChHHHHHHHHHHHHHHHHhhhcc
Q 017226          165 IQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVY  244 (375)
Q Consensus       165 i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~~v~~~il~n~~~~~~~~l~~~~~~~~~i~l~~sypl~  244 (375)
                      ||++||+|    ++|+|++..++.+++++|+.+++.||++|||++++|++.|++  +|.|+.+.+|+++.+|++.+|+++
T Consensus       250 Iq~tMk~p----~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~--~p~~~~~~ani~i~~h~i~s~~i~  323 (437)
T KOG1303|consen  250 IQHTMKSP----PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ--PPTWLIALANILIVLHLIGSYQIY  323 (437)
T ss_pred             hHhhcCCc----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhccc--CchhHHHHHHHHHHHHHhhhhhhh
Confidence            99999987    669999999999999999999999999999999999999996  589999999999999999999999


Q ss_pred             ccchHHHHHHHHHhhCCCCCCCccccccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHhccChHHHHHHHhhhhhhhhhh
Q 017226          245 SQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTI  324 (375)
Q Consensus       245 ~~p~~~~ie~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vp~~~~v~~lvGs~~~~~l~f  324 (375)
                      .+|..+.+|+....+.++  +.             ++..+.|.+.|+.+++.++++|+.+|+|+++++++||....++++
T Consensus       324 a~pl~~~~E~~~~~~~~~--~~-------------~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~  388 (437)
T KOG1303|consen  324 AQPLFDVVEKLIGVKHPD--FK-------------KRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTF  388 (437)
T ss_pred             hcchHHHHHHHhccCCcc--cc-------------ccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHH
Confidence            999999999988654321  11             123478999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHhcCcchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh
Q 017226          325 YFPVEMYFKQMNIEAWTRKWVMLRVF-SYVCFIVSTFGLVGSIQGIISA  372 (375)
Q Consensus       325 i~P~l~~~~~~~~~~~~~~~~~~~~i-~~~g~~~~v~gt~~si~~ii~~  372 (375)
                      ++|++||++++|++++.++|..++.+ .++|++.++.+..+++++++.+
T Consensus       389 ilP~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~  437 (437)
T KOG1303|consen  389 ILPCLMYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID  437 (437)
T ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence            99999999999999999999999888 7999999999999999998864

>PTZ00206 amino acid transporter; Provisional

Probab=100.00  E-value=9.4e-50  Score=395.43  Aligned_cols=345  Identities=15%  Similarity=0.109  Sum_probs=258.6

Q ss_pred             CCCCCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHH
Q 017226            3 PKSPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQ   82 (375)
Q Consensus         3 ~~~~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~   82 (375)
                      ++++..||+|+++++||+++++++++++.++++|+|++|+++++|+++.+++..-. .+..+ ....++..+.+++.+++
T Consensus       116 ~~~~~~sY~~la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~-~~~~~-~~~~~r~~~~~i~~~i~  193 (467)
T PTZ00206        116 DKTNIRTYEGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNA-PDFLK-QKSGNRLLTSLMWLCFM  193 (467)
T ss_pred             ccCCCCCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-cchhh-hccCcEEeeeehhhhHh
Confidence            45678899999999999999999999999999999999999999999998863100 00000 00012223445566788


Q ss_pred             HHhhcCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccc--cccccCchhHHHHHHHHHhhhHHhhcCCch
Q 017226           83 LILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSF--SGVSTTTSIEKMWLVAQALGDIAFAYPYSL  160 (375)
Q Consensus        83 lpl~~~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~faf~~h~  160 (375)
                      +|++++|++++|+++|.+|+++.+...+++++.+...+...+..+.+.  .+.++........+.+.++|+++|||.||.
T Consensus       194 lPLs~~r~i~~L~~~S~i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~  273 (467)
T PTZ00206        194 LPLVIPRHIDSLRYVSTIAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQI  273 (467)
T ss_pred             hhcccccchHHHHHHHHHHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhh
Confidence            999999999999999999986443322222222222211110000000  000000111112357899999999999999


Q ss_pred             hHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhccccccccCccCCccccccCCCCChHHHHHHHHHHHHHHHHh
Q 017226          161 ILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGG  240 (375)
Q Consensus       161 ~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~~v~~~il~n~~~~~~~~l~~~~~~~~~i~l~~s  240 (375)
                      +++|+++|||+|  +.+||.+++..++.++.++|..+|++||++||+++++|+++|++. .++....++++++.++++.+
T Consensus       274 ~~~~i~~~M~~~--t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p-~~~~~~~v~~~~~~~~v~~s  350 (467)
T PTZ00206        274 TAYEVYMDMTNR--SVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDP-VNEPAIMVGFVGVLVKLFVS  350 (467)
T ss_pred             hhHHHHHhhccc--chhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCC-CCCchhhHHHHHHHHHHHHh
Confidence            999999999986  448999999999999999999999999999999999999999941 23556678889999999999


Q ss_pred             hhccccchHHHHHHHHHhhCCCCCCCccccccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHhccChHHHHHHHhhhhhh
Q 017226          241 YQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFW  320 (375)
Q Consensus       241 ypl~~~p~~~~ie~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vp~~~~v~~lvGs~~~~  320 (375)
                      ||++.+|+|+.+++.+..+  .+         +.       ..|+|...+..+++++.++|+++|+++.+++++||++++
T Consensus       351 ypL~~~p~r~~i~~~~~~~--~~---------~~-------~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~  412 (467)
T PTZ00206        351 YALLGMACRNALYDVIGWD--AR---------KV-------AFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGG  412 (467)
T ss_pred             hhhhhhhHHHHHHHHhCCC--cc---------cC-------chhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHH
Confidence            9999999999999876311  10         11       124565666677778899999999999999999999999


Q ss_pred             hhhhhhhhHHHHHhc--Ccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017226          321 PLTIYFPVEMYFKQM--NIEA-WTRKWVMLRVFSYVCFIVSTFGLVGSIQGII  370 (375)
Q Consensus       321 ~l~fi~P~l~~~~~~--~~~~-~~~~~~~~~~i~~~g~~~~v~gt~~si~~ii  370 (375)
                      .++|++|++||++..  +.++ ...+|..+++++++|++++++|||+|+++.+
T Consensus       413 ~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~  465 (467)
T PTZ00206        413 LLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT  465 (467)
T ss_pred             HHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence            999999999999952  2222 2234566888999999999999999999876

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=2e-49  Score=377.84  Aligned_cols=321  Identities=21%  Similarity=0.279  Sum_probs=268.4

Q ss_pred             CCCHHHHHHHh----------hCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhH
Q 017226            7 SHNLKKEIINV----------SGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYML   76 (375)
Q Consensus         7 ~~sY~~l~~~~----------~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i   76 (375)
                      ..+|+|.++.+          +|+++|.++++++.++|+|.|++|+++++++++++.+.   +..     .+++.+.|+.
T Consensus       113 ~~~y~~~~~~a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~---~~~-----~~~s~~~~i~  184 (449)
T KOG1304|consen  113 SLDYAETAESAMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDE---HSP-----GVLSVRLYIL  184 (449)
T ss_pred             cccHHHHHHHHHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhc---cCC-----CCccHHHHHH
Confidence            46777777655          46778999999999999999999999999999999972   111     1467788888


Q ss_pred             HHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhHHHHHHHHHhhhHHhhc
Q 017226           77 IFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAY  156 (375)
Q Consensus        77 i~~~v~lpl~~~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf  156 (375)
                      +..++++|++++||||+|+.+|++|+++.++-..++.    +...++.+      +.++.+...++.+++.++|+.+|||
T Consensus       185 ~~~~~~lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~----~y~~~~~~------~~~~~~~~~~~~~~~lf~Gtaifaf  254 (449)
T KOG1304|consen  185 IQLPPLLLLNLIRNLKILSPFSLFANVFILVGLAIIM----YYLVQDLP------PTSDLPAVTGWSGLPLFFGTAIFAF  254 (449)
T ss_pred             HHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHH----HHHHhccC------CccccccccchhhhHHHHHHHHHHh
Confidence            8889999999999999999999999996654333222    22222111      1222233334556899999999999


Q ss_pred             CCchhHHHHHhhhCCCCCccchHH---HhhHHHHHHHHHHHhhhhccccccccCccCCccccccCCCCChHHHHHHHHHH
Q 017226          157 PYSLILIEIQDTLKSPPPANQTMK---KASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFI  233 (375)
Q Consensus       157 ~~h~~~~~i~~~m~~p~p~~~~~~---~~~~~s~~~~~~~y~~vg~~GY~~fG~~v~~~il~n~~~~~~~~l~~~~~~~~  233 (375)
                      +|+.++.|++|+||+|    ++|+   ++++.+|.+++++|..+|++||++|||++++.|+.|+|   ++|+.+.+++++
T Consensus       255 EGig~VLPlEn~Mk~P----~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP---~~~l~~~Vkl~~  327 (449)
T KOG1304|consen  255 EGIGMVLPLENSMKKP----QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLP---QEILSQTVKLLL  327 (449)
T ss_pred             ccceEEEehhhcccCh----hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCC---ccHHHHHHHHHH
Confidence            9999999999999998    8898   99999999999999999999999999999999999998   489999999999


Q ss_pred             HHHHHHhhhccccchHHHHHHHHHhhCCCCCCCccccccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHhccChHHHHHH
Q 017226          234 VIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGV  313 (375)
Q Consensus       234 ~i~l~~sypl~~~p~~~~ie~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vp~~~~v~~l  313 (375)
                      ++.++++||||++|..+.+|+.+.++..+     +            +.++..+.+|+.+++++..+|..+|+++++++|
T Consensus       328 ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~-----~------------~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisL  390 (449)
T KOG1304|consen  328 AIAIFLTYPLQFYVPIEIIEPGIRKKFSE-----N------------RKKLLEYALRVFLVLLTFLIAVAVPNLALFISL  390 (449)
T ss_pred             HHHHHHcCchhhhhhHHHHHHhHHHhcCc-----c------------hhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHH
Confidence            99999999999999999999988655311     1            234678899999999999999999999999999


Q ss_pred             HhhhhhhhhhhhhhhHHHHHhcCcc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017226          314 IGGVIFWPLTIYFPVEMYFKQMNIE---AWTRKWVMLRVFSYVCFIVSTFGLVGSIQGI  369 (375)
Q Consensus       314 vGs~~~~~l~fi~P~l~~~~~~~~~---~~~~~~~~~~~i~~~g~~~~v~gt~~si~~i  369 (375)
                      +||++++.+++++|+++++....++   ++..+++.|..++++|+++++.|||+|+.++
T Consensus       391 VGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i  449 (449)
T KOG1304|consen  391 VGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI  449 (449)
T ss_pred             HHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence            9999999999999999999974222   3344567788999999999999999999764

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=100.00  E-value=1.1e-45  Score=362.21  Aligned_cols=339  Identities=22%  Similarity=0.302  Sum_probs=266.7

Q ss_pred             CCCCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHH
Q 017226            4 KSPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQL   83 (375)
Q Consensus         4 ~~~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~l   83 (375)
                      +++..+|+|++++++|+++++++++++.++++|.|++|+++++|+++++.+....+       ...++..|.++.+++++
T Consensus        64 ~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~-------~~~~~~~~~~i~~~i~~  136 (409)
T PF01490_consen   64 GTGRRSYGDLARRAFGPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD-------LFISRYVWIIIFALIVL  136 (409)
T ss_pred             ccccccccccccccccccccccccchheeccccccceeEEEeeeeeeccccccccc-------ccccccccccccccccc
Confidence            56899999999999999999999999999999999999999999999998753211       13456677888888899


Q ss_pred             HhhcCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhHHHHHHHHHhhhHHhhcCCchhHH
Q 017226           84 ILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILI  163 (375)
Q Consensus        84 pl~~~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~  163 (375)
                      |++++|+++++++.|.+|+++.+.++.+.+ .........++.+   .+.++..+..+.++++.++|+++|||.||.++|
T Consensus       137 pls~~~~l~~l~~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~  212 (409)
T PF01490_consen  137 PLSFLKNLKSLRYLSILGLFSIFYFIVIVV-IYIISYGPGEPSG---VPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLP  212 (409)
T ss_pred             cccccchhhHHHHHhhhhhhccceeeeeec-ceeeeeecccccc---cccccccccchhhHHHHhhhhhhhhhhcccccc
Confidence            999999999999999999875433211111 1111211111111   111111123455789999999999999999999


Q ss_pred             HHHhhhCCCCCcc-chHHHhhHHHHHHHHHHHhhhhccccccccCccCCccccccCCCCChHHHHHHHHHHHHHHHHhhh
Q 017226          164 EIQDTLKSPPPAN-QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQ  242 (375)
Q Consensus       164 ~i~~~m~~p~p~~-~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~~v~~~il~n~~~~~~~~l~~~~~~~~~i~l~~syp  242 (375)
                      |+++|||+|  ++ ++++++...++.+++++|..+|++||++||+++++|++.|++  .++++..++++++.++++.+||
T Consensus       213 ~i~~~m~~~--~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~--~~~~~~~i~~~~~~i~~~~s~p  288 (409)
T PF01490_consen  213 PIQSEMKDP--SKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLP--NDDVLIIIARILLVISLLLSYP  288 (409)
T ss_pred             eeeeeccCC--ccccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCC--Ccccccccccccchhhhhhccc
Confidence            999999986  33 456699999999999999999999999999999999999998  3456888999999999999999


Q ss_pred             ccccchHHHHHHHHHhhCCCCCCCccccccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHhccChHHHHHHHhhhhhhhh
Q 017226          243 VYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPL  322 (375)
Q Consensus       243 l~~~p~~~~ie~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vp~~~~v~~lvGs~~~~~l  322 (375)
                      ++.+|.++.+|+.+.++.+.++     .+.+.+    .+.++.|..+|+.++..+.++|+.+|+++++++++||++++.+
T Consensus       289 l~~~p~~~~l~~~~~~~~~~~~-----~~~~~~----~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i  359 (409)
T PF01490_consen  289 LQLFPARNSLENLLFKRAASSR-----DSPKNT----PSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFI  359 (409)
T ss_pred             cccchhHhhhhhheeccccccc-----cccccc----cccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhH
Confidence            9999999999998753200000     000001    1234778999999999999999999999999999999999999


Q ss_pred             hhhhhhHHHHHhcCcchhhHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 017226          323 TIYFPVEMYFKQMNIEAWTRKW-----VMLRVFSYVCFIVSTFGLVGSI  366 (375)
Q Consensus       323 ~fi~P~l~~~~~~~~~~~~~~~-----~~~~~i~~~g~~~~v~gt~~si  366 (375)
                      +|++|+++|+|.++.++.+.+|     ..++.++++|++.++.|+|+++
T Consensus       360 ~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i  408 (409)
T PF01490_consen  360 SFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI  408 (409)
T ss_pred             HHHHHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence            9999999999986554432222     2246677889999999999886

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>PLN03074 auxin influx permease; Provisional

Probab=100.00  E-value=2e-41  Score=334.81  Aligned_cols=319  Identities=17%  Similarity=0.153  Sum_probs=253.0

Q ss_pred             CHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHHhhcC
Q 017226            9 NLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQA   88 (375)
Q Consensus         9 sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~lpl~~~   88 (375)
                      +|.|+++..+|++++.+..++..++++|.|+.|++..++++..+-.             .++.+.|+++++++++|++++
T Consensus       121 ~~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~-------------~~~~~~~~~i~~~v~~~~~~i  187 (473)
T PLN03074        121 QWFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYIND-------------NLDKRTWTYIFGACCATTVFI  187 (473)
T ss_pred             HHHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCC-------------CcCCCeEEeehHHHHHHHHHc
Confidence            6899999999999999999999999999999999988877554410             245678899999999999999


Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhHHHHHHHHHhhhHHhhcCCchhHHHHHhh
Q 017226           89 PDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDT  168 (375)
Q Consensus        89 r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~  168 (375)
                      |++|+++++|.+|..+++.+...+++.++... +.       +++++ +...+...++.++++++|||+||..+|||++|
T Consensus       188 ~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~-~~-------~~~~~-~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~  258 (473)
T PLN03074        188 PSFHNYRIWSFLGLLMTTYTAWYMTIAALSHG-QV-------EGVKH-SGPTKLVLYFTGATNILYTFGGHAVTVEIMHA  258 (473)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CC-------CCCCC-CCchhHHHHHHHHHHHHHHhcccccHHHHHHh
Confidence            99999999999998765543222222222221 11       11111 11234556788888999999999999999999


Q ss_pred             hCCCCCccchHHHhhHHHHHHHHHHHhhhhccccccccCccCC--ccccccCCCCChHHHHHHHHHHHHHHHHhhhcccc
Q 017226          169 LKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPG--NLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQ  246 (375)
Q Consensus       169 m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~~v~~--~il~n~~~~~~~~l~~~~~~~~~i~l~~sypl~~~  246 (375)
                      ||||    ++|+++...+...+..+|..+|+.||++|||++++  +.+.|+|   ++...+++++++.++++.+||++++
T Consensus       259 M~~P----~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp---~~~~~~~~~~~~~i~~~~sy~l~~~  331 (473)
T PLN03074        259 MWKP----QKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLP---RSGWRDAAVILMLIHQFITFGFACT  331 (473)
T ss_pred             ccCh----hcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCC---CchHHHHHHHHHHHHHHHHHHHHHh
Confidence            9998    78999988999999999999999999999999864  5676776   3334678999999999999999999


Q ss_pred             chHHHHHHHHHhhCCCCCCCccccccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHhccChHHHHHHHhhhhhhhhhhhh
Q 017226          247 PIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYF  326 (375)
Q Consensus       247 p~~~~ie~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vp~~~~v~~lvGs~~~~~l~fi~  326 (375)
                      |+.+..|+....+  +                 .+..+.|.++|+.+++.++++|+.+|+|+++++|+||++++.++|++
T Consensus       332 p~~~~~e~~~~~~--~-----------------~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~  392 (473)
T PLN03074        332 PLYFVWEKAIGVH--D-----------------TKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYII  392 (473)
T ss_pred             hHHHHHHHHhccc--c-----------------cccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence            9999998865321  0                 12236789999999999999999999999999999999999999999


Q ss_pred             hhHHHHHhcCc-----------ch--hhHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhcC
Q 017226          327 PVEMYFKQMNI-----------EA--WTRK--WVMLRVFSYV-CFIVSTFGLVGSIQGIISAKLS  375 (375)
Q Consensus       327 P~l~~~~~~~~-----------~~--~~~~--~~~~~~i~~~-g~~~~v~gt~~si~~ii~~~~~  375 (375)
                      |+++|++.+++           ++  ++.+  .+.|+.++++ |+++.+.|+|+|++++++++++
T Consensus       393 P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~  457 (473)
T PLN03074        393 PSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDT  457 (473)
T ss_pred             HHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhh
Confidence            99999985321           11  1112  2568877765 6666799999999999999863

>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]

Probab=100.00  E-value=1.6e-38  Score=306.26  Aligned_cols=341  Identities=16%  Similarity=0.234  Sum_probs=262.3

Q ss_pred             CCCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCch-hhHHHHHHHH
Q 017226            5 SPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTY-YMLIFGAVQL   83 (375)
Q Consensus         5 ~~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~ii~~~v~l   83 (375)
                      .+..+|++++++++|+.++...++.+.+++.| |++|+++++|.++..........+....  ...++. |++....+++
T Consensus        64 ~~~~ty~~l~~~~~g~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~--~~~~~~~ill~~~~~i~  140 (411)
T KOG1305|consen   64 SGERTYSSLGDLIFGKLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSH--YLDRNFLILLVLLFIIL  140 (411)
T ss_pred             cCCCCHHHHHHHHcCCCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccc--cccceeEeehHHHHHHH
Confidence            34459999999999999988888888888888 8999999999999776543211111000  122333 4666678889


Q ss_pred             HhhcCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhHHHHHHHHHhhhHHhhcCCchhHH
Q 017226           84 ILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILI  163 (375)
Q Consensus        84 pl~~~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~  163 (375)
                      |+++.|++++|+++|.++.+..+.++.++    ++++...+...++..  ++.+.....++.+.++|+++|||.||+|+.
T Consensus       141 pLsl~k~l~~Lk~tS~~s~~~~~~fv~~v----v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~  214 (411)
T KOG1305|consen  141 PLSLLKNLDSLKYTSALSLASVVYFVVLV----VYKYFQGPCALGRLS--YLVPNLSSFSSLFYALPIFVFAFTCHSNVF  214 (411)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHH----HHHHHhcccccCCcc--cccCCcchhhhhhhhhhhhheeeeccccce
Confidence            99999999999999999987554433322    233332221011100  111222233678999999999999999999


Q ss_pred             HHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhccccccccCccCCccccccCCCCCh----HHHHHHHHHHHHHHHH
Q 017226          164 EIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPY----WLIDLANAFIVIHLVG  239 (375)
Q Consensus       164 ~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~~v~~~il~n~~~~~~~----~l~~~~~~~~~i~l~~  239 (375)
                      ++++|||+|  +++++.++.+.+...+.++|..+|.+||++|||++.+|++.|+|+..+.    +....++..+.++++.
T Consensus       215 ~i~~El~~~--s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l  292 (411)
T KOG1305|consen  215 PIYNELKDR--SVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLL  292 (411)
T ss_pred             eeeeeeeCc--hHHHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHH
Confidence            999999986  8899999999999999999999999999999999999999999842222    1357899999999999


Q ss_pred             hhhccccchHHHHHHHHHhhCCCCCCCccccccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHhccChHHHHHHHhhhhh
Q 017226          240 GYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIF  319 (375)
Q Consensus       240 sypl~~~p~~~~ie~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vp~~~~v~~lvGs~~~  319 (375)
                      ++|+..+|+|..+++.+.+..|++         +      ...+.++.+++..++..+.+.|+.+|+++++++++||+++
T Consensus       293 ~~pi~~fPlr~~l~~~~~~~~~~~---------~------~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~  357 (411)
T KOG1305|consen  293 TFPIVLFPLRMNLDELLFPYQPGL---------T------SFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSS  357 (411)
T ss_pred             HHHHHhchHHHHHHHHhcccCCCC---------C------CccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhh
Confidence            999999999999988775443321         0      0123556778899999999999999999999999999999


Q ss_pred             hhhhhhhhhHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017226          320 WPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAK  373 (375)
Q Consensus       320 ~~l~fi~P~l~~~~~~~~~~~~~~~~~~~~i~~~g~~~~v~gt~~si~~ii~~~  373 (375)
                      +.++||+|+++|++..|.+.+++  ...+...++|+..++.|+..-+.++..+.
T Consensus       358 ~~i~FI~P~~~yl~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~i~~~~~~~  409 (411)
T KOG1305|consen  358 TSISFILPALYYLKASKKKSREP--LGALIFLILGVLLSIIGVAVMIYDLLAKN  409 (411)
T ss_pred             hhhHHHHHHHhhheeeccccccc--hHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999865433333  33455678899999999999999988764

>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=8.8e-39  Score=288.72  Aligned_cols=336  Identities=17%  Similarity=0.156  Sum_probs=271.8

Q ss_pred             CCCHHHHHHHhhCcC-cchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHHh
Q 017226            7 SHNLKKEIINVSGKT-NAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLIL   85 (375)
Q Consensus         7 ~~sY~~l~~~~~G~~-~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~lpl   85 (375)
                      ..||.+++..+++++ |.+.+.+.+.+.++.+|+.|++..+|.+..-++.      +     ..+++.|+++.+..++|.
T Consensus       184 RdsYvaIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~------~-----svd~~sWm~i~~a~LLpc  252 (524)
T KOG4303|consen  184 RDSYVAIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPG------L-----SVDKASWMMITSASLLPC  252 (524)
T ss_pred             ehhHHHHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCC------C-----CccccchhhhhhHHHhhh
Confidence            579999999999987 5699999999999999999999999987776542      1     245677999999999999


Q ss_pred             hcCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhHHHHHHHHHhhhHHhhcCCchhHHHH
Q 017226           86 SQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEI  165 (375)
Q Consensus        86 ~~~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i  165 (375)
                      +++||||..+.+|++.+.+-++.-.+++.+|..+.     +|   .++...+...+..+++.++|+++|+|..|..+|++
T Consensus       253 ~FLk~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~-----~d---W~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~L  324 (524)
T KOG4303|consen  253 SFLKDLKIVSRLSFFCTISHLVINLIMVLYCLSFV-----SD---WSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNL  324 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hh---ccceeEEEEEEcccCceEEEEEEEeeeceeecccc
Confidence            99999999999999988766665555555554331     12   22222223344456888999999999999999999


Q ss_pred             HhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhccccccccCccCCccccccCCCCChHHHHHHHHHHHHHHHHhhhccc
Q 017226          166 QDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYS  245 (375)
Q Consensus       166 ~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~~v~~~il~n~~~~~~~~l~~~~~~~~~i~l~~sypl~~  245 (375)
                      +..|++|    .+|.-.+.++-+..+++-..+|..||++||++++..|++|+|   +.....++|+++++.-++|||+-+
T Consensus       325 EGNM~~p----s~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp---~qsfk~~VN~fLV~KALLSYPLPf  397 (524)
T KOG4303|consen  325 EGNMKNP----SQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLP---NQSFKILVNLFLVVKALLSYPLPF  397 (524)
T ss_pred             ccccCCh----hHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCC---ccchhhhhhHHHHHHHHHcCCchH
Confidence            9999987    788889999999999999999999999999999999999997   556678899999999999999988


Q ss_pred             cchHHHHHHHHHhhCCCCCCCccccccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHhccChHHHHHHHhhhhhhhhhhh
Q 017226          246 QPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIY  325 (375)
Q Consensus       246 ~p~~~~ie~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vp~~~~v~~lvGs~~~~~l~fi  325 (375)
                      +.+.+.+|+-+....|+..|.+ -|+.      +.+.+.+.+.+|..+++++.+.|+.+|++..+++++|+++++.++|+
T Consensus       398 yAAvelLe~nlF~g~p~t~Fps-cys~------Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFi  470 (524)
T KOG4303|consen  398 YAAVELLENNLFLGYPQTPFPS-CYSP------DGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFI  470 (524)
T ss_pred             HHHHHHHHHhhhcCCCCCCCce-eeCC------CcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHH
Confidence            8888888887665545444321 1111      11112234568999999999999999999999999999999999999


Q ss_pred             hhhHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 017226          326 FPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS  375 (375)
Q Consensus       326 ~P~l~~~~~~~~~~~~~~~~~~~~i~~~g~~~~v~gt~~si~~ii~~~~~  375 (375)
                      .|++||++++...........+..++++|...++.|.|.|-.++++.+++
T Consensus       471 wP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~  520 (524)
T KOG4303|consen  471 WPALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINS  520 (524)
T ss_pred             HHHHHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhc
Confidence            99999999853332222334567788999999999999999999998764

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=99.91  E-value=8.3e-23  Score=199.50  Aligned_cols=332  Identities=15%  Similarity=0.163  Sum_probs=224.6

Q ss_pred             CCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHHhhc
Q 017226            8 HNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQ   87 (375)
Q Consensus         8 ~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~lpl~~   87 (375)
                      .+|.+++++.+|++++++.++...+.++|.+.+|.+..+|.+++.++....     .+  ..+++.+.+++..++.++++
T Consensus        72 ~~~~~~~~~~~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~-----~~--~~~r~~~~lif~~~~~~l~~  144 (415)
T COG0814          72 ASITSLVEDYLGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFG-----LN--PLPRKLGSLIFALVLAFLSW  144 (415)
T ss_pred             ccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcc-----cC--CcchHHHHHHHHHHHHHHHH
Confidence            599999999999999999999999999999999999999999999985321     11  14466667778888888999


Q ss_pred             CCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhHHHHHHHHHhhhHHhhcCCchhHHHHHh
Q 017226           88 APDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQD  167 (375)
Q Consensus        88 ~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~  167 (375)
                      .++...++..|.++....+..++    ++.+.....+.  ......|... +....+...++|+..|||+||+++|++++
T Consensus       145 ~~~~~~lk~ts~l~~~~v~~~~~----l~~~~~~~~~~--~~l~~~~~~~-~~~~~~~~~~ipv~vfsF~~h~~i~si~~  217 (415)
T COG0814         145 LGTLAVLKITSLLVFGKVIYLVL----LVVYLIPHWNP--ANLFALPSAS-QSFWKYLLLAIPVFVFSFGFHGNIPSLVN  217 (415)
T ss_pred             hchhHHHHHHHHHHHHHHHHHHH----HHHHHhcccCH--HHHhcccccc-hhhHHHHHHHhhHHHhhhhCCccchHHHH
Confidence            99999999999988774433222    11222111010  0111111111 23445588999999999999999999999


Q ss_pred             hhCCCCCccchHHHhhHHHHHHHHHHHhhhhccccccccCccCCccccccCCCCChHHHHHHHHHHHHHHHHhhhccccc
Q 017226          168 TLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQP  247 (375)
Q Consensus       168 ~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~~v~~~il~n~~~~~~~~l~~~~~~~~~i~l~~sypl~~~p  247 (375)
                      ||+++  ++++.+|+...+..+..++|..+++++|..+|+++.+|++++.+  +++.+. .+......+...++|.+.+|
T Consensus       218 ~~~~~--~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~--~~~~~l-~~~~~~~~~~~~~~~~~~f~  292 (415)
T COG0814         218 YMRKN--SKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKE--QNISLL-SALAGVINSPILSIALNIFA  292 (415)
T ss_pred             Hhccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccC--chHHHH-HHHHHhhcchHHHHHHHHHH
Confidence            99975  43459999999999999999999999999999999999999986  333322 22233333334555555555


Q ss_pred             hHHHHHHHHHhh---CC--CCCCC-ccccccCCCCCCcCCCcchh--hhHHHHHHHHHHHHHHhccChHHHHHHHhhhhh
Q 017226          248 IFAHFEKWICEK---FP--ENGFL-NNEFFLKPPLMPAFRWNPLR--LCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIF  319 (375)
Q Consensus       248 ~~~~ie~~~~~~---~p--~~~~~-~~~~~~~~~~~~~~~~~~~r--~~~r~~~~~~~~~iA~~vp~~~~v~~lvGs~~~  319 (375)
                      ++...-..++.-   ++  ++..+ +++...|       +..+.+  .......++.....+...|..+.+++.+|+...
T Consensus       293 ~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~~~r-------~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~  365 (415)
T COG0814         293 LFAIATSFLGVYLGLFEGLADLFKKSNSKPGR-------KKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPII  365 (415)
T ss_pred             HHHHHHHHhCchhhHHHhhhHHHHhccCcccc-------hhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            553322211100   00  00000 0000000       111222  223444567777788899999999999999999


Q ss_pred             hhhhhhhhhHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017226          320 WPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGS  365 (375)
Q Consensus       320 ~~l~fi~P~l~~~~~~~~~~~~~~~~~~~~i~~~g~~~~v~gt~~s  365 (375)
                      +.+.|+.|...+.|....+.++.++..+..++++|+..+..-.++.
T Consensus       366 ~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~~~~  411 (415)
T COG0814         366 PALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPFLAT  411 (415)
T ss_pred             HHHHHHHHHHhcCCCCceeecCCCchhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998874322222212345666777877766655543

>TIGR00837 araaP aromatic amino acid transport protein

Probab=99.59  E-value=1e-13  Score=134.95  Aligned_cols=291  Identities=11%  Similarity=0.064  Sum_probs=191.7

Q ss_pred             CCCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHH
Q 017226            5 SPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLI   84 (375)
Q Consensus         5 ~~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~lp   84 (375)
                      ++..+|.+.+++++||++++++.+.....+++.+.+|.+..++.+..+++....    .    ..+.+.+.+++.+++.+
T Consensus        56 p~~~~~~~~~~~~~G~~~g~~~~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~----~----~~~~~~~~~~~~~v~~~  127 (381)
T TIGR00837        56 PGGASFNTIAKDLLGKTGNIIAGLSLLFVLYILTYAYISGGGSILSRLIGEYFG----F----PWSARAIVLIFTVLFGS  127 (381)
T ss_pred             CCCCCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC----C----CccHHHHHHHHHHHHHH
Confidence            346799999999999999999999999999999999999999999998864211    0    12222233333334444


Q ss_pred             hhcCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhHHHHHHHHHhhhHHhhcCCchhHHH
Q 017226           85 LSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIE  164 (375)
Q Consensus        85 l~~~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~  164 (375)
                      +. .+..|..++++.+.+...+....+.++..+.+ .+ +  + ...+..  .+.....+...+++...++|++|.++++
T Consensus       128 l~-~~G~~~~~~v~~i~~~~~l~~l~~~ii~~~~~-~~-~--~-~~~~~~--~~~~~~~~~~~a~~~~~~~fg~~~~i~~  199 (381)
T TIGR00837       128 FV-WLSTSAVDRITRVLIFGKIIAFALVFSGLLPH-VK-G--D-LLLDVA--LDTSYWPYILSALPVCLTSFGFHGNVPS  199 (381)
T ss_pred             HH-HhchhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cc-H--H-HHhcCc--cccccHHHHHHHHHHHHHHHHcccccHH
Confidence            44 45668888888776654433222222222211 11 0  0 011100  0011233577889999999999999999


Q ss_pred             HHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhccccccccCcc-C------Cc---cccccCC-CCChHHHHHHHHHH
Q 017226          165 IQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT-P------GN---LLTGFGF-YEPYWLIDLANAFI  233 (375)
Q Consensus       165 i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~~v-~------~~---il~n~~~-~~~~~l~~~~~~~~  233 (375)
                      +.+|+++|   +|+.+|++..+..++.++|+.+........+.+. +      +|   ....+.. ....+...++.++-
T Consensus       200 ~~~~~~~~---~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~  276 (381)
T TIGR00837       200 LYKYYDGN---VKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFS  276 (381)
T ss_pred             HHHHhccC---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHH
Confidence            99999853   4899999999999999999987655554443221 1      11   1111110 01234455677778


Q ss_pred             HHHHHHhhhccccchHHHHHHHHHhhCCCCCCCccccccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHhccChH-HHHH
Q 017226          234 VIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFN-QVLG  312 (375)
Q Consensus       234 ~i~l~~sypl~~~p~~~~ie~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vp~~~-~v~~  312 (375)
                      .+.+..|+.-.....+|..++.+++.  +            +    +   ..|.....+..+...++|.+.|+.. ..++
T Consensus       277 ~~al~tS~~g~~l~~~d~l~~~~~~~--~------------~----~---~~~~~~~~~~~~~pl~~a~~~p~~~~~~l~  335 (381)
T TIGR00837       277 NFALASSFLGVTLGLFDYLADLFKFD--D------------S----K---KGRFKTGLLTFLPPLVFALFYPEGFLYAIG  335 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCC--c------------c----c---CCCchhhhhhHHhHHHHHHHhhHHHHHHHH
Confidence            88888888877777888877665321  0            0    0   1133344455577778899999866 8999


Q ss_pred             HHhhhhhhhhhhhhhhHHHHHhcC
Q 017226          313 VIGGVIFWPLTIYFPVEMYFKQMN  336 (375)
Q Consensus       313 lvGs~~~~~l~fi~P~l~~~~~~~  336 (375)
                      ..| +.++.+.+++|++++.+.+|
T Consensus       336 ~~G-~~~~~~~~~~p~l~~~~~r~  358 (381)
T TIGR00837       336 YAG-LAATIWAVIIPALLAWKARK  358 (381)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHh
Confidence            999 88999999999999998754

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=99.43  E-value=3.1e-11  Score=117.52  Aligned_cols=288  Identities=16%  Similarity=0.181  Sum_probs=177.0

Q ss_pred             CCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHHh
Q 017226            6 PSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLIL   85 (375)
Q Consensus         6 ~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~lpl   85 (375)
                      +..+|.+++++.+|++++++..+......++.+++|..-.++.+++.++...    +.    +.+++.-.+++.++.-.+
T Consensus        63 ~~~~~~~~a~~~lG~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~----~~----~~~~~~~~~~f~~i~~~i  134 (394)
T PF03222_consen   63 EGSSLTSMAEKYLGKKGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQL----GT----DLSPWLSSLLFTIIFGGI  134 (394)
T ss_pred             CCCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhc----CC----CCcHHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999999999999999997521    11    223333233333332222


Q ss_pred             hcCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhHHHHHHHHHhhhHHhhcCCchhHHHH
Q 017226           86 SQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEI  165 (375)
Q Consensus        86 ~~~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i  165 (375)
                      ... .-|...+.+.+-+...+.. ++.+........+.+    .+.+.  .+...++...+.++|+..+||+.|+.+|++
T Consensus       135 v~~-g~~~v~~~n~~lv~~~i~~-~~~l~~~~~p~~~~~----~L~~~--~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl  206 (394)
T PF03222_consen  135 VYF-GTKAVDRINRVLVFGMIIS-FIILVVYLIPHWNPS----NLLDA--PPSPSDWSYILPALPVLVFSFGFHNIVPSL  206 (394)
T ss_pred             HHh-hHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhcCHH----Hhhcc--ccccccHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            222 2223334433222211111 111111111111100    01110  011234445778999999999999999999


Q ss_pred             HhhhCCCCCccchHHHhhHHHHHHHHHHHhhh--hccccc---------cccCccCC--ccccccCCCCChHHHHHHHHH
Q 017226          166 QDTLKSPPPANQTMKKASTMSIITTTIFYLFC--GGFGYA---------AFGDNTPG--NLLTGFGFYEPYWLIDLANAF  232 (375)
Q Consensus       166 ~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~v--g~~GY~---------~fG~~v~~--~il~n~~~~~~~~l~~~~~~~  232 (375)
                      .+.+++   +.+|.+|++..+..+..++|++.  .+.|-+         .-++++.+  ..+.+..  ++.+....++++
T Consensus       207 ~~~~~~---d~~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~i~~~~~~f  281 (394)
T PF03222_consen  207 VKYLGG---DPKKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVS--GSPWISILGSIF  281 (394)
T ss_pred             HHHhCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhc--CCcHHHHHHHHH
Confidence            999985   34788999988888888887654  233311         11111111  1112221  223445567777


Q ss_pred             HHHHHHHhhhccccchHHHHHHHHHhhCCCCCCCccccccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHhccC-hHHHH
Q 017226          233 IVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPY-FNQVL  311 (375)
Q Consensus       233 ~~i~l~~sypl~~~p~~~~ie~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vp~-~~~v~  311 (375)
                      -.+.+.+||-=...-.+|.+++.++.  +++                   ...|...-........++|...|+ +-..+
T Consensus       282 a~~Ai~TSFlGv~lgl~d~l~d~~k~--~~~-------------------~~~r~~~~~ltf~ppl~~a~~~p~~F~~al  340 (394)
T PF03222_consen  282 AFFAIATSFLGVYLGLFDFLADLFKL--KNN-------------------SSGRLKTWLLTFLPPLIFALLFPNGFLIAL  340 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcC--Ccc-------------------ccchHHHHHHHHHhHHHHHHHCcHHHHHHH
Confidence            78888888855555677777766532  110                   122333333445667788999987 88999


Q ss_pred             HHHhhhhhhhhhhhhhhHHHHHhcC
Q 017226          312 GVIGGVIFWPLTIYFPVEMYFKQMN  336 (375)
Q Consensus       312 ~lvGs~~~~~l~fi~P~l~~~~~~~  336 (375)
                      ++.| ...+.+..++|+++..|.++
T Consensus       341 ~~aG-~~~~il~~ilP~~m~~~~r~  364 (394)
T PF03222_consen  341 GYAG-IGIAILLGILPALMVWKARK  364 (394)
T ss_pred             Hhhc-HHHHHHHHHHHHHHHHHHHc
Confidence            9999 99999999999999999754

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=99.39  E-value=7.6e-11  Score=114.53  Aligned_cols=312  Identities=12%  Similarity=0.096  Sum_probs=189.3

Q ss_pred             CCCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHH
Q 017226            5 SPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLI   84 (375)
Q Consensus         5 ~~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~lp   84 (375)
                      ++..++.+++++.+|++|+++..+......+..+.+|..-.++.+.+.++.+..+        +.+...+.+.+.++.-.
T Consensus        62 ~~~~~~~~~a~~~LG~~g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~--------~i~~~~~~l~F~~~~~~  133 (403)
T PRK15132         62 PADTGLGTLAKRYLGRYGQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGI--------SMSPTAGVLLFTLVAGG  133 (403)
T ss_pred             CCCCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccC--------CCChHHHHHHHHHHHHH
Confidence            4567999999999999999999999999999999999999999999888753211        12233344444444333


Q ss_pred             hhcCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhHHHHHHHHHhhhHHhhcCCchhHHH
Q 017226           85 LSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIE  164 (375)
Q Consensus        85 l~~~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~  164 (375)
                      ..+. ..|...+.+.+=+...+.. ++..........+.    ..+.+.   +...+  -...++|++.+||+.|+++|+
T Consensus       134 iv~~-g~~~v~~~n~~L~~~~ii~-~~~~~~~l~p~~~~----~~L~~~---~~~~~--~~~~~iPvl~~SFgfh~iIps  202 (403)
T PRK15132        134 VVCV-GTSSVDLFNRFLFSAKIIF-LVVMLALMMPHIHK----VNLLTL---PLQQG--LALSAIPVIFTSFGFHGSVPS  202 (403)
T ss_pred             HHhc-cHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCH----HHHhcC---Ccccc--HHHHHHHHHHHHhhCCcccHH
Confidence            3333 2244444443222111111 11111111111100    001100   00011  267899999999999999999


Q ss_pred             HHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhccccccccCc-----cCC-----ccccccCCC-CChHHHHHHHHHH
Q 017226          165 IQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDN-----TPG-----NLLTGFGFY-EPYWLIDLANAFI  233 (375)
Q Consensus       165 i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~~-----v~~-----~il~n~~~~-~~~~l~~~~~~~~  233 (375)
                      +.+.+++   +.+|.+|++..+..+..++|+.-=......-+.+     .++     +++..+... ...+...++.++-
T Consensus       203 l~~y~~~---~~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa  279 (403)
T PRK15132        203 IVSYMGG---NIRKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFA  279 (403)
T ss_pred             HHHHhCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHH
Confidence            9999975   3478899998888888887764433333222221     111     223333211 1235556677777


Q ss_pred             HHHHHHhhhccccchHHHHHHHHHhhCCCCCCCccccccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHhccC-hHHHHH
Q 017226          234 VIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPY-FNQVLG  312 (375)
Q Consensus       234 ~i~l~~sypl~~~p~~~~ie~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vp~-~~~v~~  312 (375)
                      .+.+..||-=...-.+|.+++.+..+  +     +              ...|...-.+..+..+++|+..|+ +....+
T Consensus       280 ~~Ai~TSFlGv~lgl~d~l~d~~~~~--~-----~--------------~~~r~~~~~l~flppli~a~~~P~~F~~al~  338 (403)
T PRK15132        280 DLALATSFLGVALGLFDYLADLFQRR--N-----T--------------VGGRLQTGLITFLPPLAFALFYPRGFVMALG  338 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccC--c-----c--------------ccCCchhehhhHHHHHHHHHHhHHHHHHHHH
Confidence            77888887555556677777665321  1     0              012444445567888899999997 788899


Q ss_pred             HHhhhhhhhhhhhhhhHHHHHhcCcc---hhh--HHHHHHHHHHHHHHHHHHH
Q 017226          313 VIGGVIFWPLTIYFPVEMYFKQMNIE---AWT--RKWVMLRVFSYVCFIVSTF  360 (375)
Q Consensus       313 lvGs~~~~~l~fi~P~l~~~~~~~~~---~~~--~~~~~~~~i~~~g~~~~v~  360 (375)
                      +.|. ..+.+.+++|+++-.|.+|.+   +++  .....+++.+++|++..+.
T Consensus       339 ~aG~-~~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~~  390 (403)
T PRK15132        339 YAGV-ALAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIGI  390 (403)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHHH
Confidence            9885 578999999999999976433   222  0233455566666655543

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=99.29  E-value=6.3e-10  Score=108.03  Aligned_cols=329  Identities=12%  Similarity=0.085  Sum_probs=193.0

Q ss_pred             CCCCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHH
Q 017226            4 KSPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQL   83 (375)
Q Consensus         4 ~~~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~l   83 (375)
                      +++..+|.+++++.||++++.+..+......+-.+.+|...+.+.++..+.++. +   . +  +.+++...+++.+++.
T Consensus        78 ~~~~~~i~~v~~~~lG~~g~~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql-~---~-~--~~~r~l~slifv~~l~  150 (443)
T PRK13629         78 SNPSGNITETVEEHFGKTGGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQL-G---F-A--PLNRGFVALFLLLLMA  150 (443)
T ss_pred             CCCCCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C---c-C--CccHHHHHHHHHHHHH
Confidence            356789999999999999999999999999999999999888888877654321 1   0 0  1233333333444443


Q ss_pred             HhhcCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccc-ccccc-----ccCchhHHHHHHHHHhhhHHhhcC
Q 017226           84 ILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMG-SFSGV-----STTTSIEKMWLVAQALGDIAFAYP  157 (375)
Q Consensus        84 pl~~~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~faf~  157 (375)
                      ...+..+ |..-+++.+=+. ..+..+  +.++++-.   |+.+. .+.+.     ++............++|++.+||+
T Consensus       151 ~iv~~G~-~~v~kv~~~Lv~-~~i~~l--~~l~~~Li---P~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~  223 (443)
T PRK13629        151 FVIWFGK-DLMVKVMSYLVW-PFIASL--VLISLSLI---PYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFN  223 (443)
T ss_pred             HHHHhhH-HHHHHHHHHHHH-HHHHHH--HHHHHHHH---HHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHh
Confidence            4444332 444444432111 111111  11111111   11000 01100     000011111246789999999999


Q ss_pred             CchhHHHHHhhhCCC-----CCc--cchHHHhhHHHHHHHHHHHhhhhccccccccCcc-----CCcc--ccc----cCC
Q 017226          158 YSLILIEIQDTLKSP-----PPA--NQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT-----PGNL--LTG----FGF  219 (375)
Q Consensus       158 ~h~~~~~i~~~m~~p-----~p~--~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~~v-----~~~i--l~n----~~~  219 (375)
                      -|+.+|+....+|+.     .++  .+|-+|++..+..+..++|+..-+..-..-+.+-     ++|+  +..    ++.
T Consensus       224 f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~  303 (443)
T PRK13629        224 FSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFAS  303 (443)
T ss_pred             ccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhh
Confidence            999999987774321     012  4778888888888887777665555444444321     1222  222    220


Q ss_pred             CCC------hHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHh-h-CCCCCCCccccccCCCCCCcCCCcchhhhHHH
Q 017226          220 YEP------YWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICE-K-FPENGFLNNEFFLKPPLMPAFRWNPLRLCFRT  291 (375)
Q Consensus       220 ~~~------~~l~~~~~~~~~i~l~~sypl~~~p~~~~ie~~~~~-~-~p~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~  291 (375)
                      ...      .++..+..+.-.+.+..||-=...-++|.++..+.+ . .++++        +.      +.+..+.....
T Consensus       304 ~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~--------~~------~~~~~~~~~~~  369 (443)
T PRK13629        304 MTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKT--------KV------SLGKLNTISMI  369 (443)
T ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--------cc------CHHHHHHHHHH
Confidence            000      223445555555677777755555778888887732 1 11110        11      11234555666


Q ss_pred             HHHHHHHHHHHhccChHHHHHHHhhhhhhhhhhhhhhHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHH
Q 017226          292 VYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFG  361 (375)
Q Consensus       292 ~~~~~~~~iA~~vp~~~~v~~lvGs~~~~~l~fi~P~l~~~~~~~~~~~~~~~~~~~~i~~~g~~~~v~g  361 (375)
                      .+++.++.+|+.=|++-++++-+|+-....+.|++|...-.|....++++.+ ..|+++++.|++....-
T Consensus       370 ~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l~~yr~~-~~n~fv~~~Gl~~i~~~  438 (443)
T PRK13629        370 FIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYRGR-LDNVFVTVIGLLTILNI  438 (443)
T ss_pred             HHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHHHHhCCC-chhHHHHHHHHHHHHHH
Confidence            7778889999999999999998888888899999999888887544444332 35777777776654433

>PRK10483 tryptophan permease; Provisional

Probab=99.28  E-value=1.3e-09  Score=105.77  Aligned_cols=290  Identities=11%  Similarity=0.031  Sum_probs=178.5

Q ss_pred             CCCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHH
Q 017226            5 SPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLI   84 (375)
Q Consensus         5 ~~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~lp   84 (375)
                      ++..++.+++++.+|++|+.+..++.....++.+++|+--.++.+++.++..  .   .    +.+++.-.++++++.-.
T Consensus        70 ~~g~~~~tma~~~LG~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~--~---~----~i~~~~~~llF~~~~~~  140 (414)
T PRK10483         70 RIGSSFDTITKDLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEM--S---L----NVPARAAGFGFALLVAF  140 (414)
T ss_pred             CCCCCHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhc--C---C----CCcHHHHHHHHHHHHHH
Confidence            3467999999999999999999999999999999999999999999998641  1   0    12333333445554444


Q ss_pred             hhcCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhHHHHHHHHHhhhHHhhcCCchhHHH
Q 017226           85 LSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIE  164 (375)
Q Consensus        85 l~~~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~  164 (375)
                      +.+.. .|...+.+.+=....+.. ++.+........+.+    .+.+.++ .....+.....++|++.+||+.|+++|+
T Consensus       141 iv~~g-t~~vd~~n~~l~~~~i~~-f~~~~~~l~~~i~~~----~L~~~~~-~~~~~~~~~~~alPvl~~SFgfh~iIPs  213 (414)
T PRK10483        141 VVWLS-TKAVSRMTAIVLGAKVIT-FFLTFGSLLGHVQPA----TLFNVAE-SNASYAPYLLMTLPFCLASFGYHGNVPS  213 (414)
T ss_pred             HHHhh-hhHHHHHHHHHHHHHHHH-HHHHHHHHHhhcCHH----HHhcccc-ccchhHHHHHHHHHHHHhhccCCCcchH
Confidence            44432 355555553222111111 111111111111100    0111000 1112223467899999999999999999


Q ss_pred             HHhhhCCCCCccchHHHhhHHHHHHHHHHHhh--hhcccccc---------ccCccCCccccccCCC-CChHHHHHHHHH
Q 017226          165 IQDTLKSPPPANQTMKKASTMSIITTTIFYLF--CGGFGYAA---------FGDNTPGNLLTGFGFY-EPYWLIDLANAF  232 (375)
Q Consensus       165 i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~--vg~~GY~~---------fG~~v~~~il~n~~~~-~~~~l~~~~~~~  232 (375)
                      +++.+++   +.+|.+|++..+..+..++|+.  ..+.|-..         -|+++ +..+..+... ++.++..+..++
T Consensus       214 l~~y~~~---d~~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni-~~L~~~l~~~~~~~~i~~~~~~F  289 (414)
T PRK10483        214 LMKYYGK---DPKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNI-DVLVQALSGVLNSRSLDLLLVVF  289 (414)
T ss_pred             HHHHhCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCh-HHHHHHHHHhcCChHHHHHHHHH
Confidence            9999875   2368899999998888888876  23333222         12222 1111222110 122444566777


Q ss_pred             HHHHHHHhhhccccchHHHHHHHHHhhCCCCCCCccccccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHhccC-hHHHH
Q 017226          233 IVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPY-FNQVL  311 (375)
Q Consensus       233 ~~i~l~~sypl~~~p~~~~ie~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vp~-~~~v~  311 (375)
                      -.+.+..||-=...-.+|.+++.++.+  ++                   ...|...-.+..+-..++|...|+ |-..+
T Consensus       290 a~~Ai~TSFlGv~LGL~d~l~D~~k~~--~~-------------------~~~r~~~~~ltflPPl~~al~~P~~Fl~AL  348 (414)
T PRK10483        290 SNFAVASSFLGVTLGLFDYLADLFGFD--DS-------------------AMGRFKTALLTFLPPVVGGLLFPNGFLYAI  348 (414)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCC--Cc-------------------cccceeeehhhHhhHHHHHHHhHHHHHHHH
Confidence            777888887555556777777765321  10                   012332333456788889999998 88899


Q ss_pred             HHHhhhhhhhhhhhhhhHHHHHhcC
Q 017226          312 GVIGGVIFWPLTIYFPVEMYFKQMN  336 (375)
Q Consensus       312 ~lvGs~~~~~l~fi~P~l~~~~~~~  336 (375)
                      +..|.. .+.+.-++|+++-.+.||
T Consensus       349 ~yAG~~-~~il~~ilP~lM~~~~Rk  372 (414)
T PRK10483        349 GYAGLA-ATIWAAIVPALLARASRK  372 (414)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHh
Confidence            999966 677888999999999764

>TIGR00814 stp serine transporter

Probab=99.23  E-value=3.8e-10  Score=109.79  Aligned_cols=321  Identities=8%  Similarity=0.023  Sum_probs=192.4

Q ss_pred             CCCCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHH
Q 017226            4 KSPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQL   83 (375)
Q Consensus         4 ~~~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~l   83 (375)
                      +.+..++.|++++.|||+++.+..+......+..+.+|....++.+.+.+.... +   .+    .+.+....+..+.++
T Consensus        62 ~~p~~~i~~~~~~~fGk~~G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~-~---~~----~p~~~i~~lilv~il  133 (397)
T TIGR00814        62 KNPCEDITEVVEEHFGKNWGILITLLYFFAIYPILLIYSVAITNDSASFLVNQL-G---TA----PPLRGLLSLALILIL  133 (397)
T ss_pred             CCCCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C---CC----CcHHHHHHHHHHHHH
Confidence            334789999999999999999999999999999999999999999888886521 1   11    112212222122222


Q ss_pred             HhhcCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhHHHHHHHHHhhhHHhhcCCchhHH
Q 017226           84 ILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILI  163 (375)
Q Consensus        84 pl~~~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~  163 (375)
                      -.......+.+.+++.+-....++..++.....+ ...+.+    .+...|  .......+...+++...+||.+|+.++
T Consensus       134 ~~iv~~G~~~i~r~~~il~~~~ii~l~~l~~~li-p~~~~~----~L~~~p--~~~~~~~~i~~alpv~~~SF~~~~iIs  206 (397)
T TIGR00814       134 VAIMSFGEKLLFKIMGPLVFPLVLILVLLSLYLI-PHWNGA----NLTTFP--SFNGFLKTLWLTIPVMVFSFNHSPIIS  206 (397)
T ss_pred             HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCHH----HHhcCC--cccchHHHHHHHHHHHHHHHHccccch
Confidence            2333345666666665443222111111111111 111100    011111  011233458899999999999999999


Q ss_pred             HHHhh----hCCCCCccchHHHhhHHHHHHHHHHHhhhhccccccccCcc-----CCc--cccccCCC-CChHHHHHHHH
Q 017226          164 EIQDT----LKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT-----PGN--LLTGFGFY-EPYWLIDLANA  231 (375)
Q Consensus       164 ~i~~~----m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~~v-----~~~--il~n~~~~-~~~~l~~~~~~  231 (375)
                      +...+    .++|+...+|.+|++..+..+..++|+..-+..-...+.+.     ++|  ++..+..+ +..+...+..+
T Consensus       207 sl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~  286 (397)
T TIGR00814       207 SFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPI  286 (397)
T ss_pred             HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHH
Confidence            98633    33221124777888888888888877766665555555332     122  12111100 12234445555


Q ss_pred             HHHHHHHHhhhccccchHHHHHHHHHhh-CCCCCCCccccccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHhccChHHH
Q 017226          232 FIVIHLVGGYQVYSQPIFAHFEKWICEK-FPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQV  310 (375)
Q Consensus       232 ~~~i~l~~sypl~~~p~~~~ie~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vp~~~~v  310 (375)
                      .-.+.+..||-=...-++|.+++.+.+. .++++        +.      +.+..+.......++.++.+|+.=|++-++
T Consensus       287 f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~~--------~~------~~~~~~~~~~~~~~~~~w~~~~~n~~il~~  352 (397)
T TIGR00814       287 VAIVAISKSFFGHYLGAREGLNGIVLNSLKMKGK--------KI------NIRKLNRAIAIFIVLTTWIVAYINPSILSF  352 (397)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHhccccc--------cc------CHHHHHHHHHHHHHHHHHHHHHhCccHHHH
Confidence            5566777777666678888888877321 11110        00      112334455566678888899999999999


Q ss_pred             HHHHhhhhhhhhhhhhhhHHHHHhcCcchhhHHHHHHHHHHHHH
Q 017226          311 LGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVC  354 (375)
Q Consensus       311 ~~lvGs~~~~~l~fi~P~l~~~~~~~~~~~~~~~~~~~~i~~~g  354 (375)
                      ++-+|+--...+.|++|...-.|....++++.++ .|+++++.|
T Consensus       353 i~~~~gp~~a~i~~~~p~~~~~~v~~l~~~~~~~-~~~fv~~~g  395 (397)
T TIGR00814       353 IEALGGPIIAMILFLMPMYAIYKVPALKKYRGRI-SNVFVTVIG  395 (397)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHccHHHHHhCCCc-chheeEeee
Confidence            9988888888999999998888875444443323 355555544

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>PRK09664 tryptophan permease TnaB; Provisional

Probab=99.21  E-value=3.8e-09  Score=102.38  Aligned_cols=293  Identities=11%  Similarity=0.049  Sum_probs=176.1

Q ss_pred             CCCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHH
Q 017226            5 SPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLI   84 (375)
Q Consensus         5 ~~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~lp   84 (375)
                      ++..++.+++++.+|++|+.+..+......++.+++|+--.++.+.+.++...    +.    +.+++.-.++++++.-+
T Consensus        68 ~~g~~l~tma~~~LG~~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~----~~----~i~~~~~~llF~~~~~~  139 (415)
T PRK09664         68 PVGSSFNTITKDLIGNTWNIISGITVAFVLYILTYAYISANGAIISETISMNL----GY----HANPRIVGICTAIFVAS  139 (415)
T ss_pred             CCCCCHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc----cC----CCcHHHHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999986411    10    12333333455555545


Q ss_pred             hhcCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhHH-HHHHHHHhhhHHhhcCCchhHH
Q 017226           85 LSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEK-MWLVAQALGDIAFAYPYSLILI  163 (375)
Q Consensus        85 l~~~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~faf~~h~~~~  163 (375)
                      ..+... |...+.+.+=....+.. ++..........+..    .+.+.+....... ......++|++.+||+.|+++|
T Consensus       140 ~v~~gt-~~vd~~nr~l~~~~ii~-f~~~~~~l~~~i~~~----~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIP  213 (415)
T PRK09664        140 VLWISS-LAASRITSLFLGLKIIS-FVIVFGSFFFQVDYS----ILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIP  213 (415)
T ss_pred             HHHhch-hHHHHHHHHHHHHHHHH-HHHHHHHHhhcccHH----HHhcCccccccchHHHHHHHHHHHHHHhhhCCCcch
Confidence            555433 55555443221111111 111111111111100    0111110010111 2236779999999999999999


Q ss_pred             HHHhhhCCCCCccchHHHhhHHHHHHHHHHHhh--hhcccccc---------ccCccCCccccccC-CCCChHHHHHHHH
Q 017226          164 EIQDTLKSPPPANQTMKKASTMSIITTTIFYLF--CGGFGYAA---------FGDNTPGNLLTGFG-FYEPYWLIDLANA  231 (375)
Q Consensus       164 ~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~--vg~~GY~~---------fG~~v~~~il~n~~-~~~~~~l~~~~~~  231 (375)
                      ++.+.+++   +.++.+|++..+..+..++|.+  .++.|-+.         -|++++.-+ ..+. .....++..+.++
T Consensus       214 sl~~y~~~---d~~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~-~s~~~~~~~~~i~~~~~~  289 (415)
T PRK09664        214 SLIICYGK---RKDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLV-KSFLGTKQHGIIEFCLLV  289 (415)
T ss_pred             HHHHHhCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHH-HHHHhhccChHHHHHHHH
Confidence            99999875   2367777777776666667732  23333221         222222211 1111 0023355567777


Q ss_pred             HHHHHHHHhhhccccchHHHHHHHHHhhCCCCCCCccccccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHhccC-hHHH
Q 017226          232 FIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPY-FNQV  310 (375)
Q Consensus       232 ~~~i~l~~sypl~~~p~~~~ie~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vp~-~~~v  310 (375)
                      +-.+.+..||-=...-.+|.+.+.++.+  ++                   ...|...-.+..+--.+.|+..|+ |-..
T Consensus       290 Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~--~~-------------------~~~r~~~~~ltflPPl~~al~~P~gFl~A  348 (415)
T PRK09664        290 FSNLAVASSFFGVTLGLFDYLADLFKID--NS-------------------HGGRFKTVLLTFLPPALLYLIFPNGFIYG  348 (415)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCC--Cc-------------------cccceeeehhhHhhhHHHHHHhhHHHHHH
Confidence            7777888888555556677777665321  10                   012332333456778889999998 8889


Q ss_pred             HHHHhhhhhhhhhhhhhhHHHHHhcCc
Q 017226          311 LGVIGGVIFWPLTIYFPVEMYFKQMNI  337 (375)
Q Consensus       311 ~~lvGs~~~~~l~fi~P~l~~~~~~~~  337 (375)
                      ++..|.. .+.+.-++|+++-.|.||.
T Consensus       349 L~yAG~~-~~il~~ilP~lM~~~~Rk~  374 (415)
T PRK09664        349 IGGAGLC-ATIWAVIIPAVLAIKARKK  374 (415)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence            9999985 6688889999999998653

>PRK11021 putative transporter; Provisional

Probab=98.40  E-value=0.00018  Score=70.74  Aligned_cols=57  Identities=14%  Similarity=0.261  Sum_probs=49.6

Q ss_pred             HHHHHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhcc
Q 017226          141 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF  200 (375)
Q Consensus       141 ~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~  200 (375)
                      ++.++..++....|+|.|-......-+|+|||+   |+.||++..+...+.++|..+...
T Consensus       175 ~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---k~iPrAi~~~~~~~~~lYil~~~~  231 (410)
T PRK11021        175 EWSGLFAALGVMFWCFVGIEAFAHLASEFKNPE---RDFPRALMIGLLLAGLVYWACTVV  231 (410)
T ss_pred             cHHHHHHHHHHHHHHHhcHHHHHhhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHH
Confidence            344678889999999999999999999999972   789999999999999999887654

>PRK10655 potE putrescine transporter; Provisional

Probab=98.40  E-value=6.3e-05  Score=74.68  Aligned_cols=55  Identities=11%  Similarity=0.143  Sum_probs=47.4

Q ss_pred             HHHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhcc
Q 017226          143 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF  200 (375)
Q Consensus       143 ~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~  200 (375)
                      .++..++....|+|.|-......-+|+|||+   |+.+|++..+...+.++|..+...
T Consensus       189 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---r~iPrAi~~~~~~~~~~Y~l~~~~  243 (438)
T PRK10655        189 SAVGSSIAMTLWAFLGLESACANSDAVENPE---RNVPIAVLGGTLGAAVIYIVSTNV  243 (438)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHHhhCcc---ccccHHHHHHHHHHHHHHHHHHHH
Confidence            3566778889999999999999999999982   789999999999999999876544

>PRK10746 putative transport protein YifK; Provisional

Probab=98.37  E-value=5.1e-05  Score=75.84  Aligned_cols=181  Identities=10%  Similarity=0.006  Sum_probs=93.4

Q ss_pred             HHHHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhccccccccCc-cC---Ccccccc
Q 017226          142 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDN-TP---GNLLTGF  217 (375)
Q Consensus       142 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~~-v~---~~il~n~  217 (375)
                      +.++..++....|+|.|--.+...-.|+|||   +|+.||++..++....++|....+.--.....+ ..   ++...-+
T Consensus       199 ~~g~~~~~~~~~faf~G~e~v~~~a~E~knP---~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~  275 (461)
T PRK10746        199 WKGFLTALCIVVASYQGVELIGITAGEAKNP---QVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTF  275 (461)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHH
Confidence            4457788999999999999999999999998   388999998888888888876543333332221 11   0110001


Q ss_pred             CCCCChHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHhh-CCCCCCCccccccCCCCCCcCCCcchhhhHHHHHHHH
Q 017226          218 GFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEK-FPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVS  296 (375)
Q Consensus       218 ~~~~~~~l~~~~~~~~~i~l~~sypl~~~p~~~~ie~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~  296 (375)
                      .+....+...+.++...++.+.+.--.++-..+.+...-.++ .|+. + .+.++.+.|        +.-+.+.....++
T Consensus       276 ~~~g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~lP~~-~-~~~~~~g~P--------~~al~~~~~~~~l  345 (461)
T PRK10746        276 AKIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAA-M-AKVSRHGVP--------VAGVAVSILILLV  345 (461)
T ss_pred             HHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHH-H-HHhCCCCCc--------HHHHHHHHHHHHH
Confidence            000111222344455555555444323333344443332211 1110 0 000011112        1112222222233


Q ss_pred             HHHHHHhccChHHHHHHHhhhhh--hhhhhhhhhHHHHHhc
Q 017226          297 VTAIAMSFPYFNQVLGVIGGVIF--WPLTIYFPVEMYFKQM  335 (375)
Q Consensus       297 ~~~iA~~vp~~~~v~~lvGs~~~--~~l~fi~P~l~~~~~~  335 (375)
                      ........|+-+.+++.+-++++  ..+.++++++.++|.+
T Consensus       346 ~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r  386 (461)
T PRK10746        346 GSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFR  386 (461)
T ss_pred             HHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344456766666665554433  3688888888888864

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=98.29  E-value=0.00012  Score=72.80  Aligned_cols=56  Identities=9%  Similarity=0.112  Sum_probs=48.2

Q ss_pred             HHHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhccc
Q 017226          143 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFG  201 (375)
Q Consensus       143 ~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~G  201 (375)
                      ..+..++....|+|.|-......-+|+|||   +|+.+|++..+...+.++|..+.+.-
T Consensus       191 ~~~~~~~~~~~~af~G~e~~~~~aeE~k~P---~r~iPrai~~s~~i~~v~Y~l~~~~~  246 (445)
T PRK10644        191 GAIQSTLNVTLWSFIGVESASVAAGVVKNP---KRNVPIATIGGVLIAAVCYVLSSTAI  246 (445)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHhhCc---ccchhHHHHHHHHHHHHHHHHHHHHH
Confidence            346667888999999999999999999998   27899999999999999998877653

>PRK10249 phenylalanine transporter; Provisional

Probab=98.26  E-value=0.00023  Score=71.07  Aligned_cols=55  Identities=15%  Similarity=0.146  Sum_probs=46.6

Q ss_pred             HHHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhcc
Q 017226          143 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF  200 (375)
Q Consensus       143 ~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~  200 (375)
                      .++..++....|+|.|-......-+|+|||   +|+.||++..++....++|......
T Consensus       209 ~~~~~~~~~~~~af~G~e~~~~~a~E~~~P---~k~iPrai~~~~~~~~~~y~~~~~~  263 (458)
T PRK10249        209 NGLILSLAVIMFSFGGLELIGITAAEARDP---EKSIPKAVNQVVYRILLFYIGSLVV  263 (458)
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHhcCH---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357788899999999999999999999997   3789999999998888888764433

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=98.26  E-value=0.00015  Score=72.68  Aligned_cols=183  Identities=8%  Similarity=-0.002  Sum_probs=94.6

Q ss_pred             HHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHH-HHHHHhhcC
Q 017226           10 LKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFG-AVQLILSQA   88 (375)
Q Consensus        10 Y~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~-~v~lpl~~~   88 (375)
                      .-+-++++||+...+.+.+.......-...+|.....+.+...++..  . +      ..+...+.+... +..+-..-.
T Consensus        69 ~y~y~~~~fG~~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~-~------~~~~~~~~~~~~~~~~~~~ln~  139 (468)
T TIGR03810        69 VYSYAKAGFGPFMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIF--G-G------GNNPPSIIGASVLLWCVHFLVL  139 (468)
T ss_pred             hhhhHHhHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--c-C------CCcHHHHHHHHHHHHHHHHHHH
Confidence            33448889999888888877766554445555555544444443321  0 0      000111121111 111222233


Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCccccccc-cccc-CchhHHHHHHHHHhhhHHhhcCCchhHHHHH
Q 017226           89 PDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFS-GVST-TTSIEKMWLVAQALGDIAFAYPYSLILIEIQ  166 (375)
Q Consensus        89 r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~  166 (375)
                      +..|..+.++.+.++.-+.-.++.++.++.. .+.+....... +.++ ........++..++....|+|.|-.....+.
T Consensus       140 ~Gv~~~~~i~~i~~~~ki~~l~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a  218 (468)
T TIGR03810       140 RGVEGAAFINTITTIAKLVPLFVFIVIGIFA-FKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLS  218 (468)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhH
Confidence            5666666665554432221111111111111 01110000000 0000 0011122345678888999999988887788


Q ss_pred             hhhCCCCCccchHHHhhHHHHHHHHHHHhhhhcccccccc
Q 017226          167 DTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFG  206 (375)
Q Consensus       167 ~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG  206 (375)
                      +|.||+    |+.+|++..++..+.++|..+.+..+-..+
T Consensus       219 ~e~k~~----k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~  254 (468)
T TIGR03810       219 ARAEKR----SDVGKATVIGLIGVLAIYVLVSVLSYGIMT  254 (468)
T ss_pred             hhccCc----ccchHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            888853    889999999999999999988776554443

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=98.18  E-value=0.00013  Score=70.78  Aligned_cols=301  Identities=12%  Similarity=0.082  Sum_probs=162.7

Q ss_pred             CCCCCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHH-
Q 017226            3 PKSPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAV-   81 (375)
Q Consensus         3 ~~~~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v-   81 (375)
                      +++...|+.+.+++.+|++...++...-...-.-++++-+.-++..++..++.             .+++.+.+...++ 
T Consensus        72 ~~p~~gSF~~~a~~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~-------------vP~Wv~al~~~~l~  138 (462)
T COG1113          72 ANPVSGSFSDYARKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPD-------------VPQWVFALAAVVLL  138 (462)
T ss_pred             hCCCCCcHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------CcHHHHHHHHHHHH
Confidence            45667899999999999999999999999999999999999999888877642             2233333333322 


Q ss_pred             -HHHhhcCCCCCchh-HHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCch-----hHHHHHHHHHhhhHHh
Q 017226           82 -QLILSQAPDFHNIQ-SLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTS-----IEKMWLVAQALGDIAF  154 (375)
Q Consensus        82 -~lpl~~~r~l~~L~-~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~f  154 (375)
                       .+=+.-.|....+. |++++=++..+.+..+.+.+ +..++.++..   ..+++...+     ++...+++.++-+.+|
T Consensus       139 ~~~NL~sVk~FGE~EfWfAlIKV~aIi~~Iv~G~~l-l~~g~~~~~~---~~g~snl~~hGGffP~G~~g~~~~~~~v~F  214 (462)
T COG1113         139 LAVNLISVKVFGELEFWFALIKVAAIIAFIVVGIVL-LFGGFGGGGG---AAGFSNLWDHGGFFPNGFLGFLSALQIVMF  214 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhccCCCCC---CccccccccCCCcCCCchHHHHHHHHHHHH
Confidence             24555667777776 44544433222222211111 1222322211   122221111     2344568889999999


Q ss_pred             hcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHH-----HHHhhhhccccccccCccCCccccccCCCCChHHHHHH
Q 017226          155 AYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTT-----IFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLA  229 (375)
Q Consensus       155 af~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~-----~~y~~vg~~GY~~fG~~v~~~il~n~~~~~~~~l~~~~  229 (375)
                      ||++.-.+=.--+|-|||+   +..+|+++.-..=..     .+..++.+.-+=.++++.++ ...-++..+-.+...+.
T Consensus       215 af~GiElvGitA~Et~dP~---k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SP-FV~~f~~iGi~~Aa~i~  290 (462)
T COG1113         215 AFGGIELVGITAAEAKDPE---KAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSP-FVTVFSLIGIPFAAGIM  290 (462)
T ss_pred             HHhhHHHHHHHHHhhcChh---hHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCc-HHHHHHHcCCcccccce
Confidence            9999888877789999983   667777654444344     44466677666666664333 22222211111222233


Q ss_pred             HHHHHHHHHHhhhccccchHHHHHHHHHhh-CCCCCCCccccccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHhccChH
Q 017226          230 NAFIVIHLVGGYQVYSQPIFAHFEKWICEK-FPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFN  308 (375)
Q Consensus       230 ~~~~~i~l~~sypl~~~p~~~~ie~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vp~~~  308 (375)
                      |..+..+.+.+.==-.+-..+.+..+-.+. -|+. + ++-.+..+|        +.-+.++.....++.++-+..|  +
T Consensus       291 N~VVLtAa~S~~NSglystsRmL~~la~~g~APk~-~-~klsk~gVP--------~~ai~~s~~~~~~~V~Lny~~P--~  358 (462)
T COG1113         291 NFVVLTAALSALNSGLYSTSRMLYSLAKQGDAPKA-F-AKLSKRGVP--------VNAILLSAVVLLLGVVLNYILP--E  358 (462)
T ss_pred             eEEEeechhhcccccccccchHHHHHhhcCcccHh-H-hhccccCCC--------HHHHHHHHHHHHHHHHHHhhcc--h
Confidence            332222222222111223333443332110 1110 0 000011122        2335567777788888888999  5


Q ss_pred             HHHHHHhhhhhhhhh--hhhhhHHHHHhcC
Q 017226          309 QVLGVIGGVIFWPLT--IYFPVEMYFKQMN  336 (375)
Q Consensus       309 ~v~~lvGs~~~~~l~--fi~P~l~~~~~~~  336 (375)
                      .++.++=+..+....  ..+=.+.++|.+|
T Consensus       359 ~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk  388 (462)
T COG1113         359 KVFELVTSSSGLGLLFVWLMILLSQLKLRK  388 (462)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            555555544443322  2333466666544

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=98.17  E-value=0.00066  Score=68.19  Aligned_cols=175  Identities=9%  Similarity=0.048  Sum_probs=96.7

Q ss_pred             CHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHHhhcC
Q 017226            9 NLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQA   88 (375)
Q Consensus         9 sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~lpl~~~   88 (375)
                      .|.+.+++.+|+...+.+.+...+.....+.+.....+..+....+             ......|..+..+ ++-+.-.
T Consensus        69 ~~~~~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~-~~~~in~  134 (478)
T TIGR00913        69 SFATYASRFVDPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTD-------------KVNPAVWIAIFYV-FIVIINL  134 (478)
T ss_pred             CHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------------CCCHHHHHHHHHH-HHHHHHH
Confidence            6778889999999888888887777666666666655555432211             1112223322211 1122233


Q ss_pred             CCCCchhHHHHHHHHHHHHHH--HHhhhheee-eeecCCc-cc---c-cccccccCchhHHHHHHHHHhhhHHhhcCCch
Q 017226           89 PDFHNIQSLSVIAAVMSFAYS--FIGFGLGVA-KVIGNGF-VM---G-SFSGVSTTTSIEKMWLVAQALGDIAFAYPYSL  160 (375)
Q Consensus        89 r~l~~L~~~S~~~~~~~~~~~--~i~~~~~i~-~~~~~~~-~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~  160 (375)
                      +..|..+.++.+.+..-+...  ++++++... ....+.. ..   . +..++++........++..++....|+|.|-.
T Consensus       135 ~gv~~~~~~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e  214 (478)
T TIGR00913       135 FGVKGYGEAEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTE  214 (478)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHH
Confidence            455555555543322111111  111111111 1000000 00   0 00111110001124567788889999999999


Q ss_pred             hHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhcc
Q 017226          161 ILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF  200 (375)
Q Consensus       161 ~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~  200 (375)
                      .....-+|+|||   +|+.+|++..+...+.++|....+.
T Consensus       215 ~~~~~a~E~knP---~r~iPrai~~~~~~~~~~Y~l~~~~  251 (478)
T TIGR00913       215 LVALTAGEAANP---RKSIPRAAKRTFWRILVFYILTLFL  251 (478)
T ss_pred             HHHHHHHhhcCh---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999997   3789999999999999999886543

>PRK15049 L-asparagine permease; Provisional

Probab=98.17  E-value=0.00047  Score=69.65  Aligned_cols=56  Identities=16%  Similarity=0.143  Sum_probs=45.0

Q ss_pred             HHHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhccc
Q 017226          143 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFG  201 (375)
Q Consensus       143 ~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~G  201 (375)
                      .+.+.++....|+|.|--.+...-+|+|||   +|+.+|++..++....++|+.....-
T Consensus       220 ~~~~~~~~~~~faf~G~e~i~~~aeE~knP---~r~iPrAi~~~~~~i~~~yi~~~~~~  275 (499)
T PRK15049        220 LPALVLIQGVVFAFASIEMVGTAAGECKDP---QTMVPKAINSVIWRIGLFYVGSVVLL  275 (499)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666778899999999999999999998   27899999988888888887655443

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=98.14  E-value=0.00078  Score=67.54  Aligned_cols=56  Identities=16%  Similarity=0.120  Sum_probs=45.8

Q ss_pred             HHHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhccc
Q 017226          143 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFG  201 (375)
Q Consensus       143 ~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~G  201 (375)
                      .++..++....|+|.|-......-+|+|||   +|+.+|++..+...+.++|......-
T Consensus       211 ~~~~~~~~~~~~af~G~e~~~~~a~E~knP---~r~iPrai~~~~~~~~~~y~l~~~~~  266 (469)
T PRK11049        211 SGFFAGFQIAVFAFVGIELVGTTAAETKDP---EKSLPRAINSIPIRIIMFYVFALIVI  266 (469)
T ss_pred             HHHHHHHHHHHHHHhcHHHHHHHHHHhcCH---hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457888999999999999999999999997   37899999877777777777655543

>TIGR00909 2A0306 amino acid transporter

Probab=98.12  E-value=0.0011  Score=65.67  Aligned_cols=177  Identities=13%  Similarity=0.087  Sum_probs=104.5

Q ss_pred             HHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccc---cCchh--hHHHHHHHHHh
Q 017226           11 KKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEY---SDTYY--MLIFGAVQLIL   85 (375)
Q Consensus        11 ~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~---~~~~~--~ii~~~v~lpl   85 (375)
                      -+-.++.+||+..+.+.+...+.....+.++....++.+..+++....+   .+..+..   +...+  ..+...++.-.
T Consensus        70 y~~~~~~~G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~  146 (429)
T TIGR00909        70 YTYAYEAMGELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLD---LPAVLTAKPGNGGVFNLPALLIVLFLTY  146 (429)
T ss_pred             eeeHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc---CchhhhcCCcccccccHHHHHHHHHHHH
Confidence            3455678999998888888888777777778888888887777531000   0000000   01111  11111222223


Q ss_pred             hcCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhHHHHHHHHHhhhHHhhcCCchhHHHH
Q 017226           86 SQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEI  165 (375)
Q Consensus        86 ~~~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i  165 (375)
                      ...+..+..++++.+.....+...++.+..+.... +.+  +  ..+.   . +....++..++....|+|.|.......
T Consensus       147 l~~~g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~-~~~--~--~~~~---~-~~~~~~~~~~~~~~~~af~G~e~~~~~  217 (429)
T TIGR00909       147 ILYLGAKESGKVNDILVVLKVAALLLFAALGAIHF-ASN--N--YTPF---M-PMGFGGVGAATALVFFAFIGFEAISTA  217 (429)
T ss_pred             HHHhCcHHHHHHHHHHHHHHHHHHHHhhhHHHhhC-cHH--h--cCCC---C-CCcHHHHHHHHHHHHHHHhhHHHHHhh
Confidence            33456677776666555433332221122222111 111  1  1111   1 122345678888999999999999999


Q ss_pred             HhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhcccc
Q 017226          166 QDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGY  202 (375)
Q Consensus       166 ~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY  202 (375)
                      .+|+|||   +|+.+|++..++.++.++|..+.....
T Consensus       218 ~~E~~~p---~r~ip~ai~~~~~~~~v~Yil~~~~~~  251 (429)
T TIGR00909       218 AEEVKNP---ERDIPKAIILSLIVVTLLYVLVAAVIL  251 (429)
T ss_pred             HHhccCc---cccccHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999987   278899999999999999988865443

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=98.12  E-value=0.00016  Score=71.44  Aligned_cols=233  Identities=13%  Similarity=0.079  Sum_probs=126.0

Q ss_pred             CCCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhH--HHHHHH
Q 017226            5 SPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYML--IFGAVQ   82 (375)
Q Consensus         5 ~~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i--i~~~v~   82 (375)
                      ++....-+-.++++||+..+...+...+.....+.++.....+.+...+..     +.     ..++....+  +..++.
T Consensus        59 p~~GG~y~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~i~~~~~~~  128 (426)
T PF13520_consen   59 PSAGGIYVWVSRAFGPFWGFIVGWLYWVAYILSLASVASSFASYLLSLFGP-----DL-----NPSPWPQFLIAIILILL  128 (426)
T ss_dssp             TSSTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTG-----GG-----TCSHHHHHHHHHHHHHH
T ss_pred             CCcCeeeehhhhcccccchhcccceeEEEeeccccccccchhhhhhhcccc-----cc-----ccccchheeeeeccccc
Confidence            445556677788899998888888888877777777777776665444321     00     000111111  111222


Q ss_pred             HHhhcCCCCCchhHHHHHHHHHHHH-HHHHhhhheeeeeecCCcc--cccc-cccccCchhHHHHHHHHHhhhHHhhcCC
Q 017226           83 LILSQAPDFHNIQSLSVIAAVMSFA-YSFIGFGLGVAKVIGNGFV--MGSF-SGVSTTTSIEKMWLVAQALGDIAFAYPY  158 (375)
Q Consensus        83 lpl~~~r~l~~L~~~S~~~~~~~~~-~~~i~~~~~i~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~faf~~  158 (375)
                      .-..-.+..|..++++.+.....++ ...+.++..+.....++..  +... ...|+     .....+.+++...|+|.|
T Consensus       129 ~~~l~~~g~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~G  203 (426)
T PF13520_consen  129 FTLLNLLGIKLSGKIQNILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPS-----GWPGFLAGFSVAFFAFSG  203 (426)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCS-----SSSHHHHHHHHHGGGGTT
T ss_pred             ceEeeechhhhhhhhhhhhhhhhhhhhhhhheeEEEeeecccccccccccccccCCc-----cccchhhHHHHHHhhccc
Confidence            3333445666666666555544441 2112222222221111100  0000 01111     111257888899999999


Q ss_pred             chhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhccccccccCcc---CCccc---ccc-CCCCChHHHHHHHH
Q 017226          159 SLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT---PGNLL---TGF-GFYEPYWLIDLANA  231 (375)
Q Consensus       159 h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~~v---~~~il---~n~-~~~~~~~l~~~~~~  231 (375)
                      -.......+|+||     |+.+|++..++..+.++|......-....+++.   .++..   ..+ +.....+...+..+
T Consensus       204 ~e~~~~~~~E~k~-----k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  278 (426)
T PF13520_consen  204 FEAIASLAEENKN-----KTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSI  278 (426)
T ss_dssp             TTHHHHGGGGSSS-----HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHH
T ss_pred             ccccccccccccc-----hhheeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhcccccccccccccc
Confidence            9999999999773     789999999999999999988666555554421   12211   010 00011233444555


Q ss_pred             HHHHHHHHhhhccccchHHHHHHHHH
Q 017226          232 FIVIHLVGGYQVYSQPIFAHFEKWIC  257 (375)
Q Consensus       232 ~~~i~l~~sypl~~~p~~~~ie~~~~  257 (375)
                      ...+..+.+..-.+....+.+..+-.
T Consensus       279 ~~~~~~~~~~~~~~~~~sR~l~~~a~  304 (426)
T PF13520_consen  279 AAILSLFGSINAFIFGASRLLYAMAR  304 (426)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccchhhcchhhccccccc
Confidence            56666666655555555555655543

...

>PRK10238 aromatic amino acid transporter; Provisional

Probab=98.11  E-value=0.00055  Score=68.39  Aligned_cols=171  Identities=13%  Similarity=0.030  Sum_probs=90.6

Q ss_pred             CCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHHhh
Q 017226            7 SHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILS   86 (375)
Q Consensus         7 ~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~lpl~   86 (375)
                      .-++-+-+++.+|+...+.+.+.........+.+.....++.++...+             +.+...+.+++..+. -..
T Consensus        75 aGg~y~~~~~~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p-------------~~~~~~~~~i~~~~~-~~l  140 (456)
T PRK10238         75 AGSFSHFAYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYP-------------EIPTWVSAAVFFVVI-NAI  140 (456)
T ss_pred             CCCHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------cCcHHHHHHHHHHHH-HHH
Confidence            345556677889999999999888888777777776666666543321             011222222221111 111


Q ss_pred             cCCCCCchhHHHHHHHHHHHHHHHHhhhhee---eeeecCCcccccccc-cc--cCchhHHHHHHHHHhhhHHhhcCCch
Q 017226           87 QAPDFHNIQSLSVIAAVMSFAYSFIGFGLGV---AKVIGNGFVMGSFSG-VS--TTTSIEKMWLVAQALGDIAFAYPYSL  160 (375)
Q Consensus        87 ~~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i---~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~faf~~h~  160 (375)
                      -....|..+.++.+.....+...++.+++++   ......+..  .... ++  +.. +....++..+++...|+|.|--
T Consensus       141 N~~gv~~~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~g~~~~~~~~~~~~~af~G~e  217 (456)
T PRK10238        141 NLTNVKVFGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQA--TVSNLWDQGGFL-PHGFTGLVMMMAIIMFSFGGLE  217 (456)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc--cccccCCCCCCc-cccHHHHHHHHHHHHHHhcCHH
Confidence            1223344444443332222211111111111   111001100  0000 00  011 1123346677888999999999


Q ss_pred             hHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhh
Q 017226          161 ILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFC  197 (375)
Q Consensus       161 ~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~v  197 (375)
                      .....-+|+|||   +|+.||++..++....++|...
T Consensus       218 ~~~~~aeE~knP---~r~iPrAi~~~~~~i~~~y~~~  251 (456)
T PRK10238        218 LVGITAAEADNP---EQSIPKATNQVIYRILIFYIGS  251 (456)
T ss_pred             HHHHHHHhhcCh---hhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999987   2789999987777777777543

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=98.10  E-value=0.00097  Score=66.93  Aligned_cols=178  Identities=8%  Similarity=-0.006  Sum_probs=97.9

Q ss_pred             HHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHH-HHHHhhcC
Q 017226           10 LKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGA-VQLILSQA   88 (375)
Q Consensus        10 Y~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~-v~lpl~~~   88 (375)
                      .-+-.++++|++..+.+.+...........++.....+.+..+++..  .   .+.  .  ...+.....+ ...-..-.
T Consensus        75 ~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~--~---~~~--~--~~~~~~~~~~~~~~~~ln~  145 (473)
T TIGR00905        75 IYAYAREGFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLF--G---SGN--P--VPSILGASVLLWVFTFLVL  145 (473)
T ss_pred             hhhhHHhHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--c---CCC--c--HHHHHHHHHHHHHHHHHHH
Confidence            33456889999998888888766655556666666666666665421  0   000  0  0111111111 11222334


Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCch-hHHHHHHHHHhhhHHhhcCCchhHHHHHh
Q 017226           89 PDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTS-IEKMWLVAQALGDIAFAYPYSLILIEIQD  167 (375)
Q Consensus        89 r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~faf~~h~~~~~i~~  167 (375)
                      +..|..+.+..+.....+...++.++..+.. .+.+....+..+ ...+. ......+..++....|+|.|-.......+
T Consensus       146 ~Gi~~~~~i~~~~~~~~l~~l~~~ii~~~~~-~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~  223 (473)
T TIGR00905       146 RGVRQAAFINTITTIAKLIPLFLFIIIGWFW-FKLDLFTADFWG-HDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSG  223 (473)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchhcccccCc-cCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            5666666665544432222111112112111 111100000000 00011 12334577788889999999999999999


Q ss_pred             hhCCCCCccchHHHhhHHHHHHHHHHHhhhhcccc
Q 017226          168 TLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGY  202 (375)
Q Consensus       168 ~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY  202 (375)
                      |+||    +|+.+|++..+..++.++|........
T Consensus       224 E~k~----~r~iPrai~~~~~i~~~~Yil~~~~~~  254 (473)
T TIGR00905       224 RAKN----KSDVGKATVLGTLGALVIYILITLLSL  254 (473)
T ss_pred             HHhc----cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            9996    288999999999999999987766533

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>PRK10580 proY putative proline-specific permease; Provisional

Probab=98.09  E-value=0.00057  Score=68.25  Aligned_cols=54  Identities=19%  Similarity=0.153  Sum_probs=44.3

Q ss_pred             HHHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhc
Q 017226          143 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGG  199 (375)
Q Consensus       143 ~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~  199 (375)
                      .++..++....|+|.|-.......+|+|||   +|+.+|++..+.....++|.....
T Consensus       199 ~~~~~~~~~~~fsf~G~e~~~~~a~E~knP---~k~iPrAi~~~~~~~~~~y~~~~~  252 (457)
T PRK10580        199 LGMVMSLQMVMFAYGGIEIIGITAGEAKDP---EKSIPRAINSVPMRILVFYVGTLF  252 (457)
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            357778889999999999999999999998   267999988877777777765543

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=98.08  E-value=0.00042  Score=69.56  Aligned_cols=49  Identities=10%  Similarity=0.070  Sum_probs=40.9

Q ss_pred             hHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhcccc
Q 017226          151 DIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGY  202 (375)
Q Consensus       151 ~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY  202 (375)
                      .+.|+|.|-......-+|+|||   +|+.+|++..+...+.++|....+.-.
T Consensus       202 ~~~~af~G~e~~~~~a~E~knP---~r~iPrAi~~~~~~~~~~y~l~~~~~~  250 (474)
T TIGR03813       202 SIFLFYAGMEMNAVHVKDVDNP---DKNYPIAILIAALGTVLIFVLGTLAIA  250 (474)
T ss_pred             HHHHHHhchhHhHHHHHhccCc---ccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4568999999999889999998   378999999999999999987555433

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>TIGR00908 2A0305 ethanolamine permease

Probab=98.07  E-value=0.00055  Score=68.04  Aligned_cols=172  Identities=10%  Similarity=-0.037  Sum_probs=93.8

Q ss_pred             CHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHHhhcC
Q 017226            9 NLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQA   88 (375)
Q Consensus         9 sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~lpl~~~   88 (375)
                      ..-.-+++.+|+...+.+.+...........++....++.+..+++.             ...+.+.+++..+ +-+.-.
T Consensus        72 g~y~~~~~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~-------------~~~~~~~~~~~~~-~~~ln~  137 (442)
T TIGR00908        72 GGYGFARRAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPV-------------GPGWLAALVFYIV-FIGINI  137 (442)
T ss_pred             CHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------CchhHHHHHHHHH-HHHHHH
Confidence            34456688999988888888887777767777777777777665531             1111111111111 112222


Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecC-CcccccccccccCchhHHHHHHHHHhhhHHhhcCCchhHHHHHh
Q 017226           89 PDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGN-GFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQD  167 (375)
Q Consensus        89 r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~  167 (375)
                      +..|..+++..+..+..+....+.++... ...+. +...+...+..... +..+.+++.++....|+|.|.......-+
T Consensus       138 ~g~~~~~~i~~~~~~~~~~~l~i~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~af~G~e~~~~~ae  215 (442)
T TIGR00908       138 LGVGEAAKLEFVVTAVAIIALGVFIGAMV-PHFDSANLFNGPQTGASSFL-PGAYVGVFAAIPFAIWFFLAVEGVAMAAE  215 (442)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHh-ccCCHHHhccCCccCCCCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444443332222211111111111 10000 00000000000001 12234677888888999999999999999


Q ss_pred             hhCCCCCccchHHHhhHHHHHHHHHHHhhhhc
Q 017226          168 TLKSPPPANQTMKKASTMSIITTTIFYLFCGG  199 (375)
Q Consensus       168 ~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~  199 (375)
                      |+|||   +|+.+|++..+..++.++|..+-+
T Consensus       216 E~k~P---~r~iprai~~s~~~~~~~~~~~~~  244 (442)
T TIGR00908       216 ETKNP---KRDIPRGLIGAILTLLALAAGILV  244 (442)
T ss_pred             HhcCc---ccccCHHHHHHHHHHHHHHHHHHH
Confidence            99997   278999999998888888876644

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=98.07  E-value=0.00093  Score=66.31  Aligned_cols=60  Identities=12%  Similarity=0.041  Sum_probs=51.3

Q ss_pred             HHHHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhcccccc
Q 017226          142 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAA  204 (375)
Q Consensus       142 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~  204 (375)
                      ..++..++....|+|.|-...-..-+|+|||   +|+.+|++..+...+.++|....+.-...
T Consensus       186 ~~~~~~a~~~~~faf~G~E~~~~~a~E~knP---~r~iPrAi~~~~~iv~ilYil~~~~~~~~  245 (435)
T PRK10435        186 GHAIIKSILLCLWAFVGVESAAVSTGMVKNP---KRTVPLATMLGTGLAGIIYIAATQVISGM  245 (435)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHhhCc---cccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4568888899999999999999999999997   27899999999999999998877654433

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=98.06  E-value=0.0013  Score=65.43  Aligned_cols=56  Identities=20%  Similarity=0.188  Sum_probs=47.8

Q ss_pred             HHHHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhcc
Q 017226          142 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF  200 (375)
Q Consensus       142 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~  200 (375)
                      +.++..++....|+|.|-..+.....|+|||   +|+.+|++..++..+.++|....+.
T Consensus       180 ~~~~~~a~~~~~faf~G~e~~~~~a~E~knP---~r~iPrai~~~~~~i~i~Yil~~~~  235 (446)
T PRK10197        180 FGAVLSAMLITMFSFMGAEIVTIAAAESDTP---EKHIVRATNSVIWRISIFYLCSIFV  235 (446)
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHHhcCh---hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3468889999999999999999999999997   3789999998888888888875544

>TIGR00930 2a30 K-Cl cotransporter

Probab=98.02  E-value=0.0024  Score=69.00  Aligned_cols=180  Identities=15%  Similarity=0.013  Sum_probs=94.2

Q ss_pred             HHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHHhhcCCCCCc
Q 017226           14 IINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHN   93 (375)
Q Consensus        14 ~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~lpl~~~r~l~~   93 (375)
                      ..++||+.....+.++....+...+..|.+-.++.+..+++.....  ...++  ...........++++-+..+...+.
T Consensus       149 isralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~--~~~~~--~~~~~iia~i~l~ll~~In~~Gvk~  224 (953)
T TIGR00930       149 ISRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSK--IMVDP--INDIRIYGTVTVVVLLGISFAGMEW  224 (953)
T ss_pred             HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--cccCc--cccchHHHHHHHHHHHHHHHhhHHH
Confidence            4567888777777777777777778888888888888877531100  00011  1111111111122222222334444


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhheeeeeecCCc---cccccccccc--CchhHHHH-HHHHHhhhHHhhcCCchhHHHHHh
Q 017226           94 IQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGF---VMGSFSGVST--TTSIEKMW-LVAQALGDIAFAYPYSLILIEIQD  167 (375)
Q Consensus        94 L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~---~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~faf~~h~~~~~i~~  167 (375)
                      -+.+..+-++..++..+.+++.++......+.   ...+...+.+  .+...... +++..++++..||.|-.....+-.
T Consensus       225 ~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sg  304 (953)
T TIGR00930       225 ENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISG  304 (953)
T ss_pred             HHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444333221111111111111111000000   0000000000  00001111 266777888889999888899999


Q ss_pred             hhCCCCCccchHHHhhHHHHHHHHHHHhhhhcc
Q 017226          168 TLKSPPPANQTMKKASTMSIITTTIFYLFCGGF  200 (375)
Q Consensus       168 ~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~  200 (375)
                      |+|||+   +..++++..++.+++++|+.+.+.
T Consensus       305 ElKnP~---r~IPratl~ai~i~~vlYllv~~~  334 (953)
T TIGR00930       305 DLKDPQ---KAIPKGTLLAILTTTVVYLGSVVL  334 (953)
T ss_pred             hccChh---hhhHHHHHHHHHHHHHHHHHHHHH
Confidence            999982   789999999999999999988763

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=98.02  E-value=0.0018  Score=64.50  Aligned_cols=177  Identities=11%  Similarity=0.020  Sum_probs=95.7

Q ss_pred             CCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHH-HHh
Q 017226            7 SHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQ-LIL   85 (375)
Q Consensus         7 ~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~-lpl   85 (375)
                      .-+.-+.+++.+|++..+.+.+.........+.+.....++.+....+.             .  ..|.+..+++. .-.
T Consensus        75 ~Gg~~~~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~--~~~~~~~~~~~~~~~  139 (452)
T TIGR01773        75 TGSFSTYADDAIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD-------------I--PLWLFSLILTIVLTL  139 (452)
T ss_pred             CCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------------C--cHHHHHHHHHHHHHH
Confidence            3466778889999998888888877776666666666665555443210             1  12332222211 122


Q ss_pred             hcCCCCCchhHHHHHHHHHHHHHH--HHhhhheeeeeecCCcccc-ccccccc-Cc-hhHHHHHHHHHhhhHHhhcCCch
Q 017226           86 SQAPDFHNIQSLSVIAAVMSFAYS--FIGFGLGVAKVIGNGFVMG-SFSGVST-TT-SIEKMWLVAQALGDIAFAYPYSL  160 (375)
Q Consensus        86 ~~~r~l~~L~~~S~~~~~~~~~~~--~i~~~~~i~~~~~~~~~~~-~~~~~~~-~~-~~~~~~~~~~~~~~~~faf~~h~  160 (375)
                      .-.+..|..+.+....++.-+...  +++++....... .+..+. ...++.+ .. .+....++..++....|+|.|-.
T Consensus       140 ~n~~gv~~~~~~~~~~~~~ki~~l~~~ii~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e  218 (452)
T TIGR01773       140 TNLYSVKSYGEFEFWFALIKVIAIIAFIILGAVAIFGF-APGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTE  218 (452)
T ss_pred             HHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHH
Confidence            222344545444433332211111  111111111100 010000 0000000 00 01223357888999999999999


Q ss_pred             hHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhcccc
Q 017226          161 ILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGY  202 (375)
Q Consensus       161 ~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY  202 (375)
                      .....-+|+|||   +|+.||++..+.....++|+...+...
T Consensus       219 ~~~~~a~E~k~P---~r~iPrAi~~~~~~~~~~y~l~~~~~~  257 (452)
T TIGR01773       219 IVTIAAAESSNP---IKSITRATNSVIWRIIVFYLGSIFIVV  257 (452)
T ss_pred             HHhHHHHhhcCh---hhHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence            999999999997   278999998888888888887544333

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=97.95  E-value=0.0012  Score=65.63  Aligned_cols=56  Identities=14%  Similarity=0.243  Sum_probs=48.3

Q ss_pred             HHHHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhcc
Q 017226          142 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF  200 (375)
Q Consensus       142 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~  200 (375)
                      ..++..++....|+|.|-.......+|+|||   +|+.+|++..++.++.++|..+...
T Consensus       194 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P---~r~iP~Ai~~~~~i~~~~Y~l~~~~  249 (445)
T PRK11357        194 FMALLAGISATSWSYTGMASICYMTGEIKNP---GKTMPRALIGSCLLVLVLYTLLALV  249 (445)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHhhHHHhcCc---cccchHHHHHHHHHHHHHHHHHHHH
Confidence            3457788889999999999999999999998   2789999999999999999876653

>PRK11387 S-methylmethionine transporter; Provisional

Probab=97.91  E-value=0.0026  Score=63.83  Aligned_cols=55  Identities=13%  Similarity=0.153  Sum_probs=46.8

Q ss_pred             HHHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhcc
Q 017226          143 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF  200 (375)
Q Consensus       143 ~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~  200 (375)
                      .++..++....|+|.|-..+...-+|+|||   +|+.+|++..++..+.++|+...+.
T Consensus       206 ~~~~~~~~~~~faf~G~e~~~~~a~E~knP---~r~iPrAi~~~~~~~~~~y~~~~~~  260 (471)
T PRK11387        206 LPILMTMVAVNFAFSGTELIGIAAGETENP---AKVIPVAIRTTIARLVIFFVGTVLV  260 (471)
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777778899999999999999999998   3789999999998888889877653

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=97.88  E-value=0.0026  Score=65.09  Aligned_cols=178  Identities=10%  Similarity=0.039  Sum_probs=96.8

Q ss_pred             HHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhcc--ccC--CCCccccccCc-hhhHHHHHHHHHhhcCC
Q 017226           15 INVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCY--HRE--GHEAACEYSDT-YYMLIFGAVQLILSQAP   89 (375)
Q Consensus        15 ~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~--~~~--~~~~~~~~~~~-~~~ii~~~v~lpl~~~r   89 (375)
                      ++++|+...+++.+...+.....+.+.....++.+..++.....  ...  +.+.+ ..... .+..+..++++-....+
T Consensus       100 ~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~-~l~~~~~~~a~~ii~l~~~ln~~  178 (557)
T TIGR00906       100 YVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYD-GLAEYPDFFAVCLILLLAVLLSF  178 (557)
T ss_pred             HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCC-cccccchHHHHHHHHHHHHHHHh
Confidence            45688888888888777666554544444555555555532000  000  00000 01111 11111112222233446


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCccccccc---ccccCchhHHHHHHHHHhhhHHhhcCCchhHHHHH
Q 017226           90 DFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFS---GVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQ  166 (375)
Q Consensus        90 ~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~  166 (375)
                      ..|..++++.+.+...+....++++.+.... +  ..+++..   +.++.. +....+++.+.....|+|.|--.+...-
T Consensus       179 Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~-~--~~~~~~~~~~~~~~f~-p~g~~g~l~g~~~~~faf~Gfd~v~~~a  254 (557)
T TIGR00906       179 GVKESAWVNKIFTAINILVLLFVIIAGFTKA-D--VANWSITEEKGAGGFM-PYGFTGVLSGAATCFFAFIGFDAIATTG  254 (557)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhhhHHHhhC-C--chhccccccccCCCCC-CcchHHHHHHHHHHHHHHhhHHHHHHhH
Confidence            7777777766555433332222222222221 0  0111100   000011 1123467888889999999999999999


Q ss_pred             hhhCCCCCccchHHHhhHHHHHHHHHHHhhhhcc
Q 017226          167 DTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF  200 (375)
Q Consensus       167 ~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~  200 (375)
                      +|.|||+   |+.+|++..++.++.++|..+.+.
T Consensus       255 eE~knP~---r~iP~aii~sl~i~~vlY~lv~~~  285 (557)
T TIGR00906       255 EEVKNPQ---RAIPIGIVTSLLVCFVAYFLMSAA  285 (557)
T ss_pred             HhccCcc---ccccHHHHHHHHHHHHHHHHHHHH
Confidence            9999982   789999999999999999877654

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=97.85  E-value=0.0079  Score=60.50  Aligned_cols=49  Identities=8%  Similarity=-0.007  Sum_probs=38.7

Q ss_pred             HHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHh
Q 017226          144 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYL  195 (375)
Q Consensus       144 ~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~  195 (375)
                      ....++....|+|.|-......-+|+|||   +|+.+|++..+..++.+++.
T Consensus       218 ~~~~~~~~~~fsf~G~e~~~~~a~E~knP---~r~iP~Ai~~s~~i~~~~~~  266 (482)
T TIGR00907       218 AFLLGLLNPAWSMTGYDGTAHMAEEIENP---EVVGPRAIIGAVAIGIVTGF  266 (482)
T ss_pred             hhhhhhhhhHHHhcCcchhhHHHHhcCCh---hhhcCHHHHHHHHHHHHHHH
Confidence            45555666779999999999999999997   37899999988877655433

>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=97.80  E-value=0.0011  Score=65.30  Aligned_cols=290  Identities=13%  Similarity=0.090  Sum_probs=148.4

Q ss_pred             HHhhCcCcchhHHHHHHHHHhhhh-hhhhhhhhhh-HHHHHHhhccccCCCCccccccCchhhHHHHHHHHHhhcCCCCC
Q 017226           15 INVSGKTNAWACSFFVHVGLYGTA-IAYTVTSAIS-MRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFH   92 (375)
Q Consensus        15 ~~~~G~~~~~~v~i~~~~~~~g~~-v~y~i~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~lpl~~~r~l~   92 (375)
                      .++||+.......+.-.+...... ..+-+..++. ++..++ .          |...+ ...-..+..++-+.-..|..
T Consensus        85 ~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-~----------c~~p~-~~~~lla~~~l~~lt~~n~~  152 (479)
T KOG1287|consen   85 SEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-L----------CDVPR-VASKLLAAALLVLLTLINSF  152 (479)
T ss_pred             HHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-C----------CCCch-HHHHHHHHHHHHHHHHHhhh
Confidence            356777655444444333333333 5566666665 444433 1          22222 22223333333334445777


Q ss_pred             chhHHHHHHHHHHH---HHHHHhhhheeeeeecCCcccccccccccCchhHHHHHHHHHhhhHHhhcCCchhHHHHHhhh
Q 017226           93 NIQSLSVIAAVMSF---AYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTL  169 (375)
Q Consensus        93 ~L~~~S~~~~~~~~---~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m  169 (375)
                      .+++.+.+-.++++   +...++++..++....+...+.+..++.. + ..+.-++..++=.-.|||.|=.++=-+-+|+
T Consensus       153 ~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g-~-~~~~g~i~lafysglfa~~GWd~lN~vteEi  230 (479)
T KOG1287|consen  153 SVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEG-S-DTDVGNIALAFYSGLFAFSGWDYLNYVTEEI  230 (479)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhchheeEeccccccccccccc-C-cCchHHHHHHHHHhhhcccCchhhccchHhh
Confidence            77776665555443   22222333444433322111000010111 1 1222346667777889999988888889999


Q ss_pred             CCCCCccchHHHhhHHHHHHHHHHHhhhhccccccccCccCCccccc------cCC-CCChHHHHHHHHHHHHHHHHhhh
Q 017226          170 KSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTG------FGF-YEPYWLIDLANAFIVIHLVGGYQ  242 (375)
Q Consensus       170 ~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~~v~~~il~n------~~~-~~~~~l~~~~~~~~~i~l~~syp  242 (375)
                      |||   +|++|+++..|+.++++.|+.+-+..+-+--   .++++.+      +.+ ..+++. .+.-++++++.+.+.=
T Consensus       231 knP---~ktLP~Ai~isi~lvt~iYil~NvAy~~vls---~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n  303 (479)
T KOG1287|consen  231 KNP---RRTLPRAILISIPLVTVIYVLVNVAYFTVLS---PDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLN  303 (479)
T ss_pred             cCc---cccchHHHHHhhHHHHHHHHHhHhheeEecC---HHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhh
Confidence            998   3889999999999999999998876554442   2233222      110 001222 3344555666655543


Q ss_pred             ccccchHHHHHHHHHh-hCCCCCCCccccccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHhccChHHHHHHHhhhhhhh
Q 017226          243 VYSQPIFAHFEKWICE-KFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWP  321 (375)
Q Consensus       243 l~~~p~~~~ie~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vp~~~~v~~lvGs~~~~~  321 (375)
                      -.++-....+...-.+ ..|+. ++.. +         .+...-+  .....-....++...+.|++++++.++=.....
T Consensus       304 ~~ifs~SR~~~~~areG~LP~~-~s~i-~---------~~~~TP~--~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~  370 (479)
T KOG1287|consen  304 SVIFSSSRLFYAGAREGHLPAF-FSMI-S---------VRRFTPR--PALLFSGLLSIVLSLIGDFDQLINYVSFAYWLF  370 (479)
T ss_pred             hHHHHHHHHHHHHHHccCccHH-HHhh-c---------CCCCCCh--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            2233332222221111 01110 0000 0         0000111  112233444445556678999999988777777


Q ss_pred             hhhhhhhHHHHHhcCcc
Q 017226          322 LTIYFPVEMYFKQMNIE  338 (375)
Q Consensus       322 l~fi~P~l~~~~~~~~~  338 (375)
                      ..+.+=+++++|.++++
T Consensus       371 ~~l~~~gll~lR~k~p~  387 (479)
T KOG1287|consen  371 RGLSMAGLLWLRWKHPP  387 (479)
T ss_pred             HHHHHHHHHHHHhhCCC
Confidence            88888899999986544

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=97.75  E-value=0.0027  Score=64.28  Aligned_cols=50  Identities=14%  Similarity=0.060  Sum_probs=40.6

Q ss_pred             HHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhh
Q 017226          146 AQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCG  198 (375)
Q Consensus       146 ~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg  198 (375)
                      ...+..+.|+|.|--.....-+|+|||   +|+++|++..++.++.++|....
T Consensus       197 ~~~~~~~~faf~G~E~~a~~a~E~knP---~r~~PrAi~~~~i~~~~l~~l~~  246 (507)
T TIGR00910       197 LVVFVAFIGAYMGVEASASHINELENP---GRDYPLAMILLMIAAICLDAIGG  246 (507)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHccCC---cccccHHHHHHHHHHHHHHHHHH
Confidence            344445688999999999999999998   27899999999888888887643

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>TIGR00911 2A0308 L-type amino acid transporter

Probab=97.54  E-value=0.0067  Score=61.35  Aligned_cols=57  Identities=19%  Similarity=0.106  Sum_probs=49.2

Q ss_pred             HHHHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhccc
Q 017226          142 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFG  201 (375)
Q Consensus       142 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~G  201 (375)
                      ..++..++....|+|.|-.......+|+|||   +|+.+|++..+...+.++|..+.+.-
T Consensus       234 ~~~~~~a~~~~~~af~G~e~~~~~a~E~knP---~r~iPrAi~~s~~~v~~~Y~l~~~a~  290 (501)
T TIGR00911       234 AGGIVLAFYSGIWAYGGWNYLNFVTEEVKNP---YRTLPIAIIISMPIVTFIYVLTNIAY  290 (501)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhHHHhcCc---hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4467778889999999999999999999997   27899999999999999999885443

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=97.47  E-value=0.01  Score=59.05  Aligned_cols=183  Identities=13%  Similarity=0.090  Sum_probs=108.4

Q ss_pred             CHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHH--HHHhh
Q 017226            9 NLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAV--QLILS   86 (375)
Q Consensus         9 sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v--~lpl~   86 (375)
                      .+-+-+++.+|++..+.+.+...........+..+..++.+....+..    ...    ..+...+..+..+.  .+-+.
T Consensus        77 G~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~----~~~~~~~~~~~~~~~~~~~~l  148 (466)
T COG0531          77 GAYAYAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGP----GLL----SIGPLLIILIALALIALLTLL  148 (466)
T ss_pred             CeeeehhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc----hhh----cCCchHHHHHHHHHHHHHHHH
Confidence            445556788998888888888888887777777777777666655420    000    01111222222221  22333


Q ss_pred             cCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCc-hhHHHHHHHHHhhhHHhhcCCchhHHHH
Q 017226           87 QAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTT-SIEKMWLVAQALGDIAFAYPYSLILIEI  165 (375)
Q Consensus        87 ~~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~faf~~h~~~~~i  165 (375)
                      -.+..|...+...+.....+...++.....+.....++   ...  .++.+ .......+..+++...++|.|-....+.
T Consensus       149 n~~G~~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~  223 (466)
T COG0531         149 NLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSN---GNL--FAPFNPGGGSFGGILAAILLAFFAFTGFEAIATL  223 (466)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc---ccc--CCCcccccchHHHHHHHHHHHHHHhhcHHHHHHH
Confidence            34556666655555544443322222222222211111   000  11011 1112224778888999999999999999


Q ss_pred             HhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhccccccccC
Q 017226          166 QDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGD  207 (375)
Q Consensus       166 ~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~  207 (375)
                      -+|+|||+   |+.+|++..++..+.++|....+.-....++
T Consensus       224 a~E~knp~---r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~  262 (466)
T COG0531         224 AEEVKNPK---RTIPRAIILSLLIVLILYILGALVIVGVLPA  262 (466)
T ss_pred             HHHhcCcc---ccccHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence            99999972   6689999999999999999888877777665

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=97.44  E-value=0.11  Score=52.11  Aligned_cols=53  Identities=8%  Similarity=-0.142  Sum_probs=41.5

Q ss_pred             HHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhc
Q 017226          144 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGG  199 (375)
Q Consensus       144 ~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~  199 (375)
                      .+..+.....|+|.|-.....+-+|+|||   +|+.||++..++.+..++|...-+
T Consensus       214 ~~~~~~~~~~~~f~G~e~~~~~aeE~knP---~r~iPrai~~s~~i~~~~~~~~~~  266 (475)
T TIGR03428       214 AFLVSGLMAAYVMVGFGSAGELSEETKNP---RRVAPRTILTALSVSALGGGLMIL  266 (475)
T ss_pred             HHHHHHHHHHHHhcCcchHHHHHHHhcCc---chhhhHHHHHHHHHHHHHHHHHHH
Confidence            45556666789999999999999999998   378999999998877665544443

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>PRK10836 lysine transporter; Provisional

Probab=97.43  E-value=0.047  Score=55.03  Aligned_cols=54  Identities=11%  Similarity=0.173  Sum_probs=44.7

Q ss_pred             HHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhcc
Q 017226          144 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF  200 (375)
Q Consensus       144 ~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~  200 (375)
                      .+..+.....|+|.|-..+...-+|+|||   +|+.+|++..++..+.++|......
T Consensus       206 ~~~~~~~~~~faf~G~e~~~~~a~E~knP---~r~iPrAi~~~~~~v~~~Yvl~~~~  259 (489)
T PRK10836        206 AMIGVAMIVGFSFQGTELIGIAAGESEDP---AKNIPRAVRQVFWRILLFYVFAILI  259 (489)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555556679999999999999999997   3789999999999999999877544

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=97.41  E-value=0.014  Score=56.24  Aligned_cols=177  Identities=15%  Similarity=0.134  Sum_probs=100.2

Q ss_pred             CCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHH-HHHHH
Q 017226            6 PSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFG-AVQLI   84 (375)
Q Consensus         6 ~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~-~v~lp   84 (375)
                      +..+..|..++++||+......+....+.+..+..-....++.++...    . +       +  ...|.+... ++..-
T Consensus        62 p~~~~~~~~~~~~Gk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l-~-------~--tp~~~~~l~~l~~~~  127 (359)
T TIGR00912        62 PEKNFSEILSKYLGKILGRLLSILFILYFFLIAAYLIRIFADFIKTYL----L-P-------R--TPIIVIIILIIIVSI  127 (359)
T ss_pred             CCCCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----c-C-------C--CCHHHHHHHHHHHHH
Confidence            345899999999999988888887777776665555555555443322    1 0       0  112322211 22222


Q ss_pred             hhcCCCCCchhHHHHHHHHHHHHH-HHHhhhheeeeeecCCcccccccccccCchhHHHHHHHH-HhhhHHhhcCCchhH
Q 017226           85 LSQAPDFHNIQSLSVIAAVMSFAY-SFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQ-ALGDIAFAYPYSLIL  162 (375)
Q Consensus        85 l~~~r~l~~L~~~S~~~~~~~~~~-~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~faf~~h~~~  162 (375)
                      ....+.++..+.++.+-....+.. .++...... ...  +. + ...++   . +....+... +.+...++|.+....
T Consensus       128 ~~~~~Gi~~i~r~~~i~~~~~i~~~~~il~~~~~-~~~--~~-~-~l~P~---~-~~g~~~~~~~~~~~~~~~f~g~~i~  198 (359)
T TIGR00912       128 YIVRKGIEVLLRTAEILLIIFLILFILVLILLAP-KLG--NI-K-NLLPV---L-ENGLSPILKGAYPVVTFAFGEIEIF  198 (359)
T ss_pred             HHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccc--cH-H-HccCc---c-ccCcHHHHhhhhHHhhhhhHHHHHH
Confidence            233356777777665554332221 111111111 100  00 0 01111   0 112223333 334677888877777


Q ss_pred             HHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhccccccccCcc
Q 017226          163 IEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT  209 (375)
Q Consensus       163 ~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~~v  209 (375)
                      .....++++|    ++.+|+...+..++.++|..+-+.....+|.+.
T Consensus       199 ~~~~~~~~~~----~~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~  241 (359)
T TIGR00912       199 FLLFPLLSKK----KKIKKSIIKAIIIGVLLYILTTFVSISVFGGNV  241 (359)
T ss_pred             HHHHHHhCCh----hhhHHHHHHHHHHHHHHHHHHHHHHHheecHHH
Confidence            7777888875    788999999999999999988888888887543

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=97.22  E-value=0.052  Score=54.86  Aligned_cols=54  Identities=19%  Similarity=0.130  Sum_probs=45.8

Q ss_pred             HHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhcc
Q 017226          144 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF  200 (375)
Q Consensus       144 ~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~  200 (375)
                      ++..++....|+|.|-......-+|+|||   +|+.+|++..+...+.++|....+.
T Consensus       212 ~~~~~~~~~~~~f~G~e~~~~~a~E~~~p---~~~~p~ai~~~~~~~~~~y~l~~~~  265 (496)
T PRK15238        212 AVLSFVVFAIFAYGGIEAVGGLVDKTENP---EKNFPKGIIIAAIVISIGYSLAIFL  265 (496)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhccCC---CccccHHHHHHHHHHHHHHHHHHHH
Confidence            46667778899999999999999999998   3789999999999999999876443

>TIGR00800 ncs1 NCS1 nucleoside transporter family

Probab=96.80  E-value=0.043  Score=54.61  Aligned_cols=194  Identities=16%  Similarity=0.060  Sum_probs=102.4

Q ss_pred             CCCCCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccc--cCchhhHHHHH
Q 017226            3 PKSPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEY--SDTYYMLIFGA   80 (375)
Q Consensus         3 ~~~~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~--~~~~~~ii~~~   80 (375)
                      +|++. ++.-+.|..||.+|..+..++..+..+|=........++.+..+++....+ ..+ .+.+.  ......+++.+
T Consensus        72 ~r~Gl-~~~v~sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~-~~~-~~~~~t~~~~~~~~i~~~  148 (442)
T TIGR00800        72 AKYGL-PFPVLSRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPG-YLH-LGNGMTTLELICFIIFWA  148 (442)
T ss_pred             HHhCC-CcchhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccc-ccc-cCCcccHHHHHHHHHHHH
Confidence            34444 667789999999999999999999999999999999999998888763211 000 00000  01122334445


Q ss_pred             HHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccc-cCchhHHHHHHHHHhhhHH-hhcCC
Q 017226           81 VQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVS-TTTSIEKMWLVAQALGDIA-FAYPY  158 (375)
Q Consensus        81 v~lpl~~~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-faf~~  158 (375)
                      +.+++....-.+-.+.....+....+.. +...+....+.  ++..+  ..+.+ +.++....+++..++...+ +.-..
T Consensus       149 l~~~~~~~~g~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~--~g~~~--~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~  223 (442)
T TIGR00800       149 LVLVFLFFFGYKIRHLFEWLAVVPPFAA-FGMLIWALSKA--HGKGP--LGELTGTLHGSTGAWAFLYALSLVIGSFATW  223 (442)
T ss_pred             HHHHHHHcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHc--CCCCc--cccCCCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence            5566555544444444444443321111 11111111111  11000  00000 0111233445555554433 22233


Q ss_pred             chhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhcccccc----ccCc
Q 017226          159 SLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAA----FGDN  208 (375)
Q Consensus       159 h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~----fG~~  208 (375)
                      -.+.++..+.+|+|    ++-.+....++....+....+|+.+-..    +|+.
T Consensus       224 ~~~~~DysRy~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~  273 (442)
T TIGR00800       224 ATNAPDFTRFGKSK----KTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEP  273 (442)
T ss_pred             HcCchhhhhhcCCc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            45678888888875    3333345556666666666677766655    7764

The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.

>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX

Probab=96.78  E-value=0.16  Score=49.66  Aligned_cols=91  Identities=13%  Similarity=0.077  Sum_probs=62.4

Q ss_pred             CCCCCCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHH
Q 017226            2 GPKSPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAV   81 (375)
Q Consensus         2 ~~~~~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v   81 (375)
                      |+|++ .++.-+.|..||++|..+..+...+...|=-.......++.+..+.+...    +.     .+...+.++++++
T Consensus        53 G~~~G-l~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~----~~-----~~~~~~~~i~~~l  122 (386)
T TIGR02358        53 GADTG-LSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLF----GE-----ESPMLWILIVGIL  122 (386)
T ss_pred             hcccC-cCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CC-----CchHHHHHHHHHH
Confidence            44444 47888999999999999999999999999999999999999999886421    11     1122344455554


Q ss_pred             HHHhhcCCCCCchhHHHHHHHH
Q 017226           82 QLILSQAPDFHNIQSLSVIAAV  103 (375)
Q Consensus        82 ~lpl~~~r~l~~L~~~S~~~~~  103 (375)
                      ..+.+.. -.|.++++..++..
T Consensus       123 ~~~~~~~-G~~~i~~~~~~~~~  143 (386)
T TIGR02358       123 VTLWLLS-GPLAFVWLNNWSVW  143 (386)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHH
Confidence            5555543 44556666655544

On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=96.67  E-value=0.0085  Score=60.18  Aligned_cols=64  Identities=19%  Similarity=0.168  Sum_probs=53.9

Q ss_pred             HHHHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhccccccccCc
Q 017226          142 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDN  208 (375)
Q Consensus       142 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~~  208 (375)
                      ..++..++....++|.|-......-+|.|||   +|+.||++..++....++|......--...+.+
T Consensus       199 ~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P---~k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~  262 (478)
T PF00324_consen  199 FSGFFAALVFAFFAFVGFESIAILAEEAKNP---RKTIPRATLLSVLRIGVFYVLTSYALTLAVPYD  262 (478)
T ss_pred             hhHHHHhhhhhhcccccccccccccccCCCc---hhhhhhHhhhhhhhhhhhhhhhhhhcccccCcc
Confidence            4568899999999999999999999999998   378999999999999999988777655555543

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>COG3949 Uncharacterized membrane protein [Function unknown]

Probab=96.62  E-value=0.13  Score=48.22  Aligned_cols=81  Identities=20%  Similarity=0.224  Sum_probs=60.7

Q ss_pred             CCCCCCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhh--HHHH
Q 017226            2 GPKSPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYM--LIFG   79 (375)
Q Consensus         2 ~~~~~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~--ii~~   79 (375)
                      +.+-+.++|+|.-++.+|++.....|+.+..+++++++.-+--.++.+++.++.              +  .|+  ++..
T Consensus        60 g~~f~a~~y~~~~~~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~l--------------P--~wiGali~i  123 (349)
T COG3949          60 GKKFNATSYREILKYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFGL--------------P--YWIGALIII  123 (349)
T ss_pred             HHHhcccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhCc--------------c--HHHHHHHHH
Confidence            456678999999999999999999999999999999999888888887777632              1  233  3333


Q ss_pred             HHHHHhhcCCCCCchhHHH
Q 017226           80 AVQLILSQAPDFHNIQSLS   98 (375)
Q Consensus        80 ~v~lpl~~~r~l~~L~~~S   98 (375)
                      ....-+-++++.+.+-.+.
T Consensus       124 ~~v~i~lfl~~vegi~tvn  142 (349)
T COG3949         124 LLVLILLFLGRVEGIITVN  142 (349)
T ss_pred             HHHHHHHHHhcccceeeeh
Confidence            4444555666677665444

>PRK09442 panF sodium/panthothenate symporter; Provisional

Probab=96.60  E-value=0.94  Score=45.62  Aligned_cols=87  Identities=15%  Similarity=0.161  Sum_probs=59.5

Q ss_pred             CCCCCCCHHHHHHHhhCcCc-chhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHH
Q 017226            3 PKSPSHNLKKEIINVSGKTN-AWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAV   81 (375)
Q Consensus         3 ~~~~~~sY~~l~~~~~G~~~-~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v   81 (375)
                      +|.+..|..|.-++-||++. +....+...+..++...+.+.-.+..++.+++              ++...-+++.+++
T Consensus       103 r~~~~~T~~e~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g--------------i~~~~~iii~~~i  168 (483)
T PRK09442        103 RKYNAVTLNDMLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG--------------ISYETGLLIFGIT  168 (483)
T ss_pred             HHcCCccHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHH
Confidence            56788999999999999764 55666666666666666667777777776652              1122234445556


Q ss_pred             HHHhhcCCCCCchhHHHHHHHH
Q 017226           82 QLILSQAPDFHNIQSLSVIAAV  103 (375)
Q Consensus        82 ~lpl~~~r~l~~L~~~S~~~~~  103 (375)
                      ..-.+.+.-++...++..+=.+
T Consensus       169 v~iYt~~GGl~av~~TD~iQ~~  190 (483)
T PRK09442        169 VALYTAFGGFRAVVLTDALQGI  190 (483)
T ss_pred             HHHHHHhccHHHHHHHHHHHHH
Confidence            6677788888888888765544

>PRK11375 allantoin permease; Provisional

Probab=96.59  E-value=0.31  Score=49.07  Aligned_cols=49  Identities=4%  Similarity=-0.108  Sum_probs=38.5

Q ss_pred             CCCHHHHHHHhhCcCcchhHHHHHH-HHHhhhhhhhhhhhhhhHHHHHHh
Q 017226            7 SHNLKKEIINVSGKTNAWACSFFVH-VGLYGTAIAYTVTSAISMRAIQKS   55 (375)
Q Consensus         7 ~~sY~~l~~~~~G~~~~~~v~i~~~-~~~~g~~v~y~i~~~~~l~~l~~~   55 (375)
                      ..++.-+.|..||.+|..+..+... +..+|=-.....+.++.+..+++.
T Consensus        88 Gl~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~  137 (484)
T PRK11375         88 GVPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGK  137 (484)
T ss_pred             CCChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3478899999999999888888874 566777777777788888777654

>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]

Probab=96.30  E-value=0.18  Score=49.69  Aligned_cols=180  Identities=16%  Similarity=0.118  Sum_probs=100.7

Q ss_pred             CCCCCCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHH
Q 017226            2 GPKSPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAV   81 (375)
Q Consensus         2 ~~~~~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v   81 (375)
                      |++++..++ .++|+.||.+|.++..+...+.+.|-...-.+..++.   ..+   .    +    ..+...|+++.+++
T Consensus        76 Ga~~Glpqm-i~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a---~~~---~----~----~~~~~~~ili~g~l  140 (442)
T COG1457          76 GARTGLPQM-ILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIA---IGS---G----T----GLPVWAGILIIGVL  140 (442)
T ss_pred             ccccCCChh-eeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccc---ccc---C----C----CCcHHHHHHHHHHH
Confidence            566666665 4689999999999999999999999999999888876   111   0    1    12344566666665


Q ss_pred             HHHhhcC--CCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhHHHHHHHHHhhhHH-hhcCC
Q 017226           82 QLILSQA--PDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIA-FAYPY  158 (375)
Q Consensus        82 ~lpl~~~--r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-faf~~  158 (375)
                      +...+..  |-++++.+.+....+..+.+.+.   ... +..  +..+. ...    ..+.+.-++..+++... +.-..
T Consensus       141 ~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~~---~~~-~~~--~~~~~-~~~----~~~~~~~~fl~a~slv~g~~~sw  209 (442)
T COG1457         141 MTLVTIFGYRALHKLERIAVPLLLLLFLYLLA---LLF-RSK--GGLDA-LWV----KGPTSPLSFLSALSLVIGSFASW  209 (442)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHH-hcc--cccce-eec----cCCCcchhHHHHHHHHHHHHHhh
Confidence            5555544  56666666665554433222211   111 100  10010 000    00111112222222211 11223


Q ss_pred             chhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhccccccccCcc
Q 017226          159 SLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT  209 (375)
Q Consensus       159 h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~~v  209 (375)
                      -+...+..+-+|+|+|  ++--.....+......+-+++|...-.+=|+.-
T Consensus       210 ~~~~aDysRy~~~~t~--~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~  258 (442)
T COG1457         210 GPYAADYSRYAPSPTP--SKAFLAAVLGFFLGTSFMMILGAALAAAAGNAD  258 (442)
T ss_pred             hhhhhhhhhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            4456677778887643  233334455666677777888888888887754

>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=96.25  E-value=0.2  Score=50.01  Aligned_cols=65  Identities=11%  Similarity=-0.023  Sum_probs=45.4

Q ss_pred             HHHHHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhccccccccCc
Q 017226          141 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDN  208 (375)
Q Consensus       141 ~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~~  208 (375)
                      +-|.+..++-.-+..+.|--....+-+|-||+   .++-||++..+..+..++-..+-+.-..+-++|
T Consensus       250 ~G~afil~f~~~~wt~sGyDa~~H~aEE~~nA---sk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D  314 (550)
T KOG1289|consen  250 NGWAFILGFFNPAWTMSGYDAAAHMAEETKNA---SKAAPRGIISSIAIGFILGWIIIIGIAYTIPDD  314 (550)
T ss_pred             chHHHHHhhccceeEEeccCchHHHHHHhcch---hhhccHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            44667777777777788877888888999986   267899888877777666544444444455544

>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]

Probab=96.19  E-value=1.6  Score=44.05  Aligned_cols=86  Identities=9%  Similarity=-0.012  Sum_probs=63.2

Q ss_pred             CCCCCCCCHHHHHHHhhC-cCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHH
Q 017226            2 GPKSPSHNLKKEIINVSG-KTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGA   80 (375)
Q Consensus         2 ~~~~~~~sY~~l~~~~~G-~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~   80 (375)
                      ..+.+..|..|.-++=|| ++.|.+..+...+...+-+...+.-.+..++..+..              +...-+++.+.
T Consensus        99 ~~~~~~~T~~d~l~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~gi--------------~~~~~~~~~~~  164 (493)
T COG0591          99 AKARGATTIPDFLEARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFGI--------------SYVTGILIGAL  164 (493)
T ss_pred             hcccCCccHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC--------------CHHHHHHHHHH
Confidence            356678999999999999 888999999999999999999999998887554421              11112233445


Q ss_pred             HHHHhhcCCCCCchhHHHHHH
Q 017226           81 VQLILSQAPDFHNIQSLSVIA  101 (375)
Q Consensus        81 v~lpl~~~r~l~~L~~~S~~~  101 (375)
                      ++..-..+--++...++..+=
T Consensus       165 ~v~~Yt~~gG~~av~~Td~iq  185 (493)
T COG0591         165 IVALYTFLGGLRAVVWTDFIQ  185 (493)
T ss_pred             HHHHHHHHcChhHHHHHHHHH
Confidence            555666666777777777654

>TIGR02119 panF sodium/pantothenate symporter

Probab=96.13  E-value=1.7  Score=43.56  Aligned_cols=87  Identities=15%  Similarity=0.200  Sum_probs=62.7

Q ss_pred             CCCCCCCHHHHHHHhhCcCc-chhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHH
Q 017226            3 PKSPSHNLKKEIINVSGKTN-AWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAV   81 (375)
Q Consensus         3 ~~~~~~sY~~l~~~~~G~~~-~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v   81 (375)
                      +|.+..|..|.-++-||++. ++...++..+..++...+.+.-.+..++.+++              ++.+.-+++.+++
T Consensus       102 ~~~~~~T~~e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g--------------i~~~~~iii~~~i  167 (471)
T TIGR02119       102 RKYNAITINDVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG--------------LSYLTALFIFSSS  167 (471)
T ss_pred             HHcCCccHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHH
Confidence            46788999999999999664 67888888888888877777777777776653              1222334445555


Q ss_pred             HHHhhcCCCCCchhHHHHHHHH
Q 017226           82 QLILSQAPDFHNIQSLSVIAAV  103 (375)
Q Consensus        82 ~lpl~~~r~l~~L~~~S~~~~~  103 (375)
                      ..-.....-++...++..+=.+
T Consensus       168 v~iYt~~GG~~av~~td~iQ~~  189 (471)
T TIGR02119       168 VLIYTTFGGFRAVALTDAIQGI  189 (471)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHH
Confidence            6677777888888888765543

Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.

>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=96.10  E-value=0.074  Score=50.45  Aligned_cols=179  Identities=13%  Similarity=0.077  Sum_probs=106.7

Q ss_pred             CCCCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHH-HHHH
Q 017226            4 KSPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIF-GAVQ   82 (375)
Q Consensus         4 ~~~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~-~~v~   82 (375)
                      +.+..+..|..++.+||+..+...+....+.+......+...+|.++...-    + +         ...|.+.. ....
T Consensus        58 ~~p~~~l~~~~~~~~Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~l----p-~---------TP~~~i~~~~ll~  123 (320)
T PF03845_consen   58 RFPGKTLVEISEKLFGKWLGKIINLLYILYFLLISALVLREFSEFIKTYLL----P-E---------TPIWVIILLFLLV  123 (320)
T ss_pred             HCCCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----C-c---------CCHHHHHHHHHHH
Confidence            456789999999999999888888888888888777777777776655431    0 0         11233222 2222


Q ss_pred             HHhhcCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhHHHHHHHHHhhhHHhhcCCchhH
Q 017226           83 LILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLIL  162 (375)
Q Consensus        83 lpl~~~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~  162 (375)
                      .--.-.+.++.++..+.+-....+...+++..... +..   +.+ .+.++    ...+..+.+.+.-...+.|.+-...
T Consensus       124 ~~y~a~~G~e~i~R~~~~~~~~~~i~~~~i~~~~~-~~~---~~~-~l~P~----~~~g~~~i~~~~~~~~~~~~~~~~~  194 (320)
T PF03845_consen  124 AAYAARKGIEVIARVAEILFPIFLILLLLILLLSI-PNI---DWD-NLLPV----LESGIKPILKGSLVISFPFGGIEIL  194 (320)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccC---CHH-HeeCc----ccCChHHHHHHHHHHHHHHHHHHHH
Confidence            23334467777776554333322221111122222 111   000 11111    1123334565655666777776666


Q ss_pred             HHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhccccccccCcc
Q 017226          163 IEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT  209 (375)
Q Consensus       163 ~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~~v  209 (375)
                      .-+...+++|    ++..|....+.....++|...-+.....||.+.
T Consensus       195 l~~~p~~~~~----~~~~k~~~~~~~~~~~~~~~~~~~~i~vfG~~~  237 (320)
T PF03845_consen  195 LFLFPFVKDK----KKLKKSLLIAILISGLFLLFIIFITIGVFGPEL  237 (320)
T ss_pred             HHHHHHcCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            6777888875    677888888888888888887777788888643

A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane

>PRK11017 codB cytosine permease; Provisional

Probab=95.33  E-value=0.87  Score=44.76  Aligned_cols=51  Identities=16%  Similarity=0.066  Sum_probs=37.7

Q ss_pred             CCCCCCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHH
Q 017226            2 GPKSPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQ   53 (375)
Q Consensus         2 ~~~~~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~   53 (375)
                      |+|.+ .++.-++|..||.+|..+..+...+...|=......+.++.++++.
T Consensus        66 G~k~G-~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~  116 (404)
T PRK11017         66 GAKTG-LSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKAT  116 (404)
T ss_pred             HhccC-cCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence            34444 4788899999999999998888888887766666666666655543

>PRK12488 acetate permease; Provisional

Probab=94.98  E-value=5  Score=41.15  Aligned_cols=86  Identities=13%  Similarity=0.062  Sum_probs=58.4

Q ss_pred             CCCCCCHHHHHHHhhC-cCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHH
Q 017226            4 KSPSHNLKKEIINVSG-KTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQ   82 (375)
Q Consensus         4 ~~~~~sY~~l~~~~~G-~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~   82 (375)
                      |.+..|..|.-++=|| ++.|.+..+...+..+.-..+.+.-.+..++.++.              ++...-+++.+++.
T Consensus       126 ~~g~~T~~d~l~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g--------------i~~~~~iii~~~i~  191 (549)
T PRK12488        126 NLGKYTFADVVSYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG--------------ISYLYAVVIVGALM  191 (549)
T ss_pred             HCCCcchHHHHHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHH
Confidence            4456899999998888 55788888888777777777777777776666642              11222244455566


Q ss_pred             HHhhcCCCCCchhHHHHHHHH
Q 017226           83 LILSQAPDFHNIQSLSVIAAV  103 (375)
Q Consensus        83 lpl~~~r~l~~L~~~S~~~~~  103 (375)
                      .--+..-=++...++..+=.+
T Consensus       192 ~~Yt~~GGm~av~~td~iQ~~  212 (549)
T PRK12488        192 VLYVTFGGMLATTWVQIIKAV  212 (549)
T ss_pred             HHHHhccchhHHHHHHHHHHH
Confidence            666777788888877766544

>TIGR00813 sss transporter, SSS family

Probab=94.74  E-value=3.5  Score=40.43  Aligned_cols=86  Identities=12%  Similarity=0.100  Sum_probs=61.2

Q ss_pred             CCCCCCHHHHHHHhhCcC-cchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHH
Q 017226            4 KSPSHNLKKEIINVSGKT-NAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQ   82 (375)
Q Consensus         4 ~~~~~sY~~l~~~~~G~~-~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~   82 (375)
                      |.+..|..|.-++-||++ .+....+...+..+....+.+.-.+..++.+.+              ++.+.-+++.+++.
T Consensus        62 ~~~~~T~~e~l~~Ryg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g--------------i~~~~~~ii~~~i~  127 (407)
T TIGR00813        62 NNGAYTMPEYLEKRFGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITG--------------LDLYLSLLLLGAIT  127 (407)
T ss_pred             HcCCCchhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------chHHHHHHHHHHHH
Confidence            456889999999999984 667777777888888888888888887777653              11222334444555


Q ss_pred             HHhhcCCCCCchhHHHHHHHH
Q 017226           83 LILSQAPDFHNIQSLSVIAAV  103 (375)
Q Consensus        83 lpl~~~r~l~~L~~~S~~~~~  103 (375)
                      .--...--++...++..+=.+
T Consensus       128 ~~Yt~~GG~~av~~Td~iQ~~  148 (407)
T TIGR00813       128 ILYTVFGGLKAVVWTDTIQAV  148 (407)
T ss_pred             HHHHHHcchHHHHHHHHHHHH
Confidence            566777788888887766544

have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.

>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells

Probab=94.26  E-value=0.25  Score=48.49  Aligned_cols=87  Identities=13%  Similarity=0.116  Sum_probs=50.1

Q ss_pred             CCCCCCHHHHHHHhhCcCc--chhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHH
Q 017226            4 KSPSHNLKKEIINVSGKTN--AWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAV   81 (375)
Q Consensus         4 ~~~~~sY~~l~~~~~G~~~--~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v   81 (375)
                      |.+..|..|.-++-||++.  +.+..+...+....-....+.-.+..++.+.+              ++....+++.+++
T Consensus        65 ~~~~~T~~e~~~~Ryg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g--------------i~~~~~~~i~~~i  130 (406)
T PF00474_consen   65 RSGAVTIPEYLEKRYGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG--------------IPYNTAILIVGVI  130 (406)
T ss_dssp             HTT--SHHHHHHHHT-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT----------------HHHHHHHHHHH
T ss_pred             ccchhhhhhhhhhhcCCchhhhhhcccccchhhhhhhhccccccccchhhccc--------------hhhhHHHHHHHHH
Confidence            4677899999999999988  55555556666666666666666666555542              1222334445556


Q ss_pred             HHHhhcCCCCCchhHHHHHHHHH
Q 017226           82 QLILSQAPDFHNIQSLSVIAAVM  104 (375)
Q Consensus        82 ~lpl~~~r~l~~L~~~S~~~~~~  104 (375)
                      .+-....-=++...++..+=.+.
T Consensus       131 ~~iYt~~GGl~av~~td~iQ~~i  153 (406)
T PF00474_consen  131 VIIYTFFGGLRAVAWTDFIQGVI  153 (406)
T ss_dssp             HHHTTCTT------SHHHHHHHH
T ss_pred             HHHhhhhhhHhhhhHHHHHHHHH
Confidence            66677777888888877665543

Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.

>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=93.89  E-value=2.9  Score=42.78  Aligned_cols=175  Identities=14%  Similarity=0.074  Sum_probs=97.2

Q ss_pred             HHHHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhcc-ccccccCc--cCCccccccC
Q 017226          142 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF-GYAAFGDN--TPGNLLTGFG  218 (375)
Q Consensus       142 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~-GY~~fG~~--v~~~il~n~~  218 (375)
                      +.++..++.+..|+|.|--.+-..-.|-|||+   |..|+++..++..+..+|....+. |-..=.++  ..++-...-|
T Consensus       231 f~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~---k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~sp  307 (554)
T KOG1286|consen  231 FKGVLSGAATAFFSFIGFELVATTAEEAKNPR---KAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASP  307 (554)
T ss_pred             cceeeHHHHHHHHHHhhHHHHHHHHHhccCCc---ccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccH
Confidence            34577888899999999988888889999983   789999999999999999877653 22222232  2222211101


Q ss_pred             CC---CChHHH---HHHHHHHHHHHHHhhhccccchHHHHHHHHHhhC-CCCCCCccccccCCCCCCcCCCcchhhhHHH
Q 017226          219 FY---EPYWLI---DLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKF-PENGFLNNEFFLKPPLMPAFRWNPLRLCFRT  291 (375)
Q Consensus       219 ~~---~~~~l~---~~~~~~~~i~l~~sypl~~~p~~~~ie~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~  291 (375)
                      ..   ...+..   .+.++...+.++.+---.+++.-+.+..+-.+.. |+  +..+-++..+|         .+  -..
T Consensus       308 F~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G~~Pk--~f~~v~~~g~P---------~~--a~~  374 (554)
T KOG1286|consen  308 FVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYALAKDGLAPK--FFARVDRRGVP---------LV--AVL  374 (554)
T ss_pred             HHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcCCcch--HHhhcCCCCCc---------hh--HHH
Confidence            00   011112   2566666666665554446677777766543211 11  00110000112         11  112


Q ss_pred             HHHHHHHHHHHhccC-----hHHHHHHHhhhhhhhhhhhhhhHHHHHh
Q 017226          292 VYVVSVTAIAMSFPY-----FNQVLGVIGGVIFWPLTIYFPVEMYFKQ  334 (375)
Q Consensus       292 ~~~~~~~~iA~~vp~-----~~~v~~lvGs~~~~~l~fi~P~l~~~~~  334 (375)
                      +..++..+.++....     ++.++++.|--+  .+++.+=++.|++.
T Consensus       375 v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~t--l~~w~~i~~~~i~~  420 (554)
T KOG1286|consen  375 VSGLFGALAALNFSLGAATVFNWLVNLSSIGT--LFAWTLVALSHLRF  420 (554)
T ss_pred             HHHHHHHHHHHHhccccchHHHHHHHHHhHHH--HHHHHHHHHHHeee
Confidence            222334444444433     588888877443  56666656666665

>PRK15419 proline:sodium symporter PutP; Provisional

Probab=93.54  E-value=9.4  Score=38.65  Aligned_cols=86  Identities=8%  Similarity=-0.030  Sum_probs=49.6

Q ss_pred             CCCCCCHHHHHHHhhCcCcchh---HHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHH
Q 017226            4 KSPSHNLKKEIINVSGKTNAWA---CSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGA   80 (375)
Q Consensus         4 ~~~~~sY~~l~~~~~G~~~~~~---v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~   80 (375)
                      +.+..|-.|.-++=||++.|.+   ..+...+....-+.+.+...+..++.++.              ++...-+++.++
T Consensus       104 ~~~~~T~~e~l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g--------------i~~~~~iii~~~  169 (502)
T PRK15419        104 NNNALTLPDYFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG--------------MSYETALWAGAA  169 (502)
T ss_pred             hcCceeHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHH
Confidence            3467788899999999765443   33334444444444444445555554432              222223444556


Q ss_pred             HHHHhhcCCCCCchhHHHHHHHH
Q 017226           81 VQLILSQAPDFHNIQSLSVIAAV  103 (375)
Q Consensus        81 v~lpl~~~r~l~~L~~~S~~~~~  103 (375)
                      +.+--+..-=++...++-.+=.+
T Consensus       170 iv~iYt~~GGl~aV~~TD~iQ~~  192 (502)
T PRK15419        170 ATILYTFIGGFLAVSWTDTVQAS  192 (502)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHH
Confidence            66677777778887777765544

>TIGR02121 Na_Pro_sym sodium/proline symporter

Probab=92.19  E-value=14  Score=37.19  Aligned_cols=86  Identities=10%  Similarity=-0.016  Sum_probs=48.7

Q ss_pred             CCCCCCHHHHHHHhhCcCcchh---HHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHH
Q 017226            4 KSPSHNLKKEIINVSGKTNAWA---CSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGA   80 (375)
Q Consensus         4 ~~~~~sY~~l~~~~~G~~~~~~---v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~   80 (375)
                      |.+..|-.|.-++=||++.+.+   ..+...+....-....+.-.+..++.+++              ++...-+++.++
T Consensus       100 ~~~~~T~~e~l~~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g--------------i~~~~~iii~~~  165 (487)
T TIGR02121       100 AHNSITLPDFFENRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG--------------LDYKTGLLIGAL  165 (487)
T ss_pred             hcCCccHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------ccHHHHHHHHHH
Confidence            5678899999999999765443   33333333333344444455555555442              112223344445


Q ss_pred             HHHHhhcCCCCCchhHHHHHHHH
Q 017226           81 VQLILSQAPDFHNIQSLSVIAAV  103 (375)
Q Consensus        81 v~lpl~~~r~l~~L~~~S~~~~~  103 (375)
                      +..--...--++...++..+=.+
T Consensus       166 i~~~Yt~~GGl~av~~TD~iQ~~  188 (487)
T TIGR02121       166 IIVIYTFFGGFLAVSWTDFVQGL  188 (487)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHH
Confidence            55566666777777777665443

This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.

>TIGR02711 symport_actP cation/acetate symporter ActP

Probab=91.74  E-value=17  Score=37.24  Aligned_cols=85  Identities=8%  Similarity=-0.068  Sum_probs=52.3

Q ss_pred             CCCCCCHHHHHHHhhCcC-cchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHH
Q 017226            4 KSPSHNLKKEIINVSGKT-NAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQ   82 (375)
Q Consensus         4 ~~~~~sY~~l~~~~~G~~-~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~   82 (375)
                      |.+..|..|.-++=||.+ .|.+..+...+..+.-....+.-.+..++.++.              ++.+.-+++.+++.
T Consensus       126 r~g~~T~~d~l~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g--------------i~~~~~iii~~~i~  191 (549)
T TIGR02711       126 NLGRYTFADVASYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG--------------LNYHVAVVLVGILM  191 (549)
T ss_pred             HcCCccHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHH
Confidence            446689999999888754 577767666666666566666666666665542              11222234444555


Q ss_pred             HHhhcCCCCCchhHHHHHHH
Q 017226           83 LILSQAPDFHNIQSLSVIAA  102 (375)
Q Consensus        83 lpl~~~r~l~~L~~~S~~~~  102 (375)
                      .--...-=++...++..+=.
T Consensus       192 ~~Yt~~GGm~av~~td~iQ~  211 (549)
T TIGR02711       192 VMYVLFGGMLATTWVQIIKA  211 (549)
T ss_pred             HHHHHhhhhHHHHHHHHHHH
Confidence            55666667777666665443

Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=91.20  E-value=18  Score=36.53  Aligned_cols=53  Identities=13%  Similarity=0.183  Sum_probs=41.9

Q ss_pred             HHHHHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhh
Q 017226          141 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLF  196 (375)
Q Consensus       141 ~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~  196 (375)
                      .+.++...+-+..|+|.|.-.+---..|-+||   +|..||+++..+.=..++|+.
T Consensus       232 gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP---~K~iPkAik~vfwRIl~FYi~  284 (541)
T COG0833         232 GFKGFCSVFVIAAFSFSGTELVGLAAGESENP---RKSIPKAIKQVFWRILLFYIL  284 (541)
T ss_pred             chHHHHHHHhhheeeeeceeeeeeeecccCCc---hhhhHHHHHHHHHHHHHHHHH
Confidence            34567778888889999988877777899987   378899998888777777743

>PRK09395 actP acetate permease; Provisional

Probab=81.41  E-value=68  Score=32.91  Aligned_cols=85  Identities=8%  Similarity=-0.058  Sum_probs=53.5

Q ss_pred             CCCCCCHHHHHHHhhCc-CcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHH
Q 017226            4 KSPSHNLKKEIINVSGK-TNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQ   82 (375)
Q Consensus         4 ~~~~~sY~~l~~~~~G~-~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~   82 (375)
                      |.+..|+.|.-+.=||+ +.|....+...+..+.-..+.+.-.+..++.+..              ++...-+++.+++.
T Consensus       128 ~~g~~T~~d~l~~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g--------------i~~~~~ili~~~i~  193 (551)
T PRK09395        128 NLGKYTFADVASYRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG--------------LNYHVAVVLVGVLM  193 (551)
T ss_pred             hCCCccHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHH
Confidence            45678999999999985 4677777776665555555555556655555542              12222344445555


Q ss_pred             HHhhcCCCCCchhHHHHHHH
Q 017226           83 LILSQAPDFHNIQSLSVIAA  102 (375)
Q Consensus        83 lpl~~~r~l~~L~~~S~~~~  102 (375)
                      .--+..-=++...++..+=.
T Consensus       194 ~iYt~~GGm~av~~TD~iQ~  213 (551)
T PRK09395        194 MVYVLFGGMLATTWVQIIKA  213 (551)
T ss_pred             HHHHhhcchHHHHHHHHHHH
Confidence            66666677777777766443

>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]

Probab=80.51  E-value=63  Score=31.92  Aligned_cols=46  Identities=15%  Similarity=0.026  Sum_probs=39.8

Q ss_pred             CCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHH
Q 017226            8 HNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQ   53 (375)
Q Consensus         8 ~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~   53 (375)
                      .+..|..++-++++..++..+...+....++++-.+-.+--++-++
T Consensus        77 ~~laq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~  122 (416)
T COG1914          77 KGLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLF  122 (416)
T ss_pred             CcHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4677888888999999999999999999999999888888877765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	375
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	98.78
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	98.42
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	98.32
2jln_A	501	MHP1; hydantoin, transporter, membrane protein, nu	97.07
3dh4_A	530	Sodium/glucose cotransporter; membrane protein, sy	95.72
2xq2_A	593	Sodium/glucose cotransporter; transport protein, i	94.25

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=98.78  E-value=9.6e-08  Score=93.16  Aligned_cols=182  Identities=8%  Similarity=0.012  Sum_probs=102.1

Q ss_pred             CCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHH-HHHHHh
Q 017226            7 SHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFG-AVQLIL   85 (375)
Q Consensus         7 ~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~-~v~lpl   85 (375)
                      .-++-+..++.+|++......+...+.......++....++.+...++..       ++  .+.  .+.+... ..++-.
T Consensus        70 ~Gg~y~~~~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~--~~~~~~~~~~~~~~  138 (445)
T 3l1l_A           70 PGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL-------KD--PWV--LTITCVVVLWIFVL  138 (445)
T ss_dssp             TTTHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGG-------GS--HHH--HHHHHHHHHHHHHH
T ss_pred             CCCchhhHHhHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccc-------cc--cHH--HHHHHHHHHHHHHH
Confidence            34667778999999988888888877776666666666655544332210       00  011  1111111 111222


Q ss_pred             hcCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhHHHHHHHHHhhhHHhhcCCchhHHHH
Q 017226           86 SQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEI  165 (375)
Q Consensus        86 ~~~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i  165 (375)
                      ...+..|..+.++.+.....+...++.++..+...  ++. .. .+++. ........++..++....|+|.|.......
T Consensus       139 in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~--~~~-~~-~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~  213 (445)
T 3l1l_A          139 LNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWF--RGE-TY-MAAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVA  213 (445)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTC--CCC-CC-CCC------------HHHHHHHHHHTTTTTTHHHHG
T ss_pred             HHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--Chh-hc-ccccC-ccCCccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            23345556655554443322222221122222111  110 00 01110 011112345788899999999999999999


Q ss_pred             HhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhccccccccC
Q 017226          166 QDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGD  207 (375)
Q Consensus       166 ~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~  207 (375)
                      .+|+|||   +|+.+|++..+...+.++|....+......+.
T Consensus       214 ~~e~k~p---~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~  252 (445)
T 3l1l_A          214 AGVVKNP---KRNVPIATIGGVLIAAVCYVLSTTAIMGMIPN  252 (445)
T ss_dssp             GGGBSSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred             HHHhcCc---cccccHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            9999987   37899999999999999999888766555543

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=98.42  E-value=3.8e-06  Score=83.32  Aligned_cols=186  Identities=10%  Similarity=-0.066  Sum_probs=99.0

Q ss_pred             CCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCc-hhhHHHH-HHHHH
Q 017226            7 SHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDT-YYMLIFG-AVQLI   84 (375)
Q Consensus         7 ~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-~~~ii~~-~v~lp   84 (375)
                      .-..-.-+++.+|++......+...+.......++....++.+..++.    .. +    ...+.. .+.+..+ +.++-
T Consensus        72 ~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~p-~----~~~~~~~~~~~~~~~~~~~~  142 (511)
T 4djk_A           72 EGGVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILK----WP-A----LNEDPITKTIAALIILWALA  142 (511)
T ss_dssp             --CHHHHHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTT----CG-G----GTSCSSHHHHHHHHHHHHHH
T ss_pred             CCChhhhHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----Cc-c----cccCcHHHHHHHHHHHHHHH
Confidence            345556777899998888888877777766666666666655433210    00 0    001111 1222111 12222


Q ss_pred             hhcCCCCCchhHHHHHHHHHHHH-HHHHhhhheeeeeecCCcc--cccccccccCchhHHHHHHHHHhhhHHhhcCCchh
Q 017226           85 LSQAPDFHNIQSLSVIAAVMSFA-YSFIGFGLGVAKVIGNGFV--MGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLI  161 (375)
Q Consensus        85 l~~~r~l~~L~~~S~~~~~~~~~-~~~i~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~  161 (375)
                      +.-.+..|....+..+.....+. ..++.++..+.....+++.  +.+..++   .+..+..+...++....|+|.|...
T Consensus       143 ~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~G~e~  219 (511)
T 4djk_A          143 LTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTF---FPDFSKVGTLVVFVAFILSYMGVEA  219 (511)
T ss_dssp             HHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CC---CCCTTSTTTTTTHHHHHHHHTTGGG
T ss_pred             HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCccccc---CCCcccchHHHHHHHHHHHHhhHHH
Confidence            33345666666665543322111 0111111222111111100  0000111   0010111234456778999999999


Q ss_pred             HHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhccccccccC
Q 017226          162 LIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGD  207 (375)
Q Consensus       162 ~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~  207 (375)
                      .....+|+|||+   |+.+|++..++..+.++|....+.-....++
T Consensus       220 ~~~~a~E~k~P~---k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~  262 (511)
T 4djk_A          220 SATHVNEMSNPG---RDYPLAMLLLMVAAICLSSVGGLSIAMVIPG  262 (511)
T ss_dssp             GTGGGSSSSCCT---TTHHHHHHHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHhccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHeecCH
Confidence            999999999972   7899999999999999999888776666654

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=98.32  E-value=5e-05  Score=73.77  Aligned_cols=176  Identities=9%  Similarity=-0.000  Sum_probs=98.1

Q ss_pred             CCCHHHHHHHhhCcCc-chhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHH---HHH
Q 017226            7 SHNLKKEIINVSGKTN-AWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFG---AVQ   82 (375)
Q Consensus         7 ~~sY~~l~~~~~G~~~-~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~---~v~   82 (375)
                      ....-+.+++.+|++. .-++.+...+.....+..+....++.+..+++.    .         ....+..+.+   .++
T Consensus        69 ~Gg~y~~~~~~~G~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~---------~~~~~~~~~~~~~~~~  135 (444)
T 3gia_A           69 NAGPIAFIHKAIGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINA----P---------INTFNIAITEIGIVAF  135 (444)
T ss_dssp             TTTHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----C---------CCHHHHHHHHHHHHHH
T ss_pred             CCcHHHhHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----C---------CchHHHHHHHHHHHHH
Confidence            3456678889999862 112334444444555556666666666554421    0         0112211111   112


Q ss_pred             HHhhcCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhHHHHHHHHHhhhHHhhcCCchhH
Q 017226           83 LILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLIL  162 (375)
Q Consensus        83 lpl~~~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~  162 (375)
                      +-....+..|..+.++.+.....+...++.++..+...   ++.+  ..+  . ..+..+.+++.+++...|+|.|....
T Consensus       136 ~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~---~~~~--~~~--~-~~~~g~~~~~~~~~~~~~a~~G~e~~  207 (444)
T 3gia_A          136 FTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI---HPSY--VIP--D-LAPSAVSGMIFASAIFFLSYMGFGVI  207 (444)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CGGG--TSC--C-CSHHHHHHHHHHHHHGGGGGTHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---Chhh--cCC--C-CCCcchHHHHHHHHHHHHHHHhHHHH
Confidence            22233345555555554443322222111122222221   1111  110  0 11234456788888899999999999


Q ss_pred             HHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhcccccccc
Q 017226          163 IEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFG  206 (375)
Q Consensus       163 ~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG  206 (375)
                      ....+|+|||   +|+.+|++..+...+.++|....+......+
T Consensus       208 ~~~~~e~k~P---~r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~  248 (444)
T 3gia_A          208 TNASEHIENP---KKNVPRAIFISILIVMFVYVGVAISAIGNLP  248 (444)
T ss_dssp             HTTGGGBSSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHccCc---ccchhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999987   3679999999999999999987766554444

>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A

Probab=97.07  E-value=0.00092  Score=66.14  Aligned_cols=89  Identities=15%  Similarity=0.023  Sum_probs=64.5

Q ss_pred             CCCCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHH
Q 017226            4 KSPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQL   83 (375)
Q Consensus         4 ~~~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~l   83 (375)
                      |.+. +|.++.|..||++|..+..+...+.++|-........++.+..+++... +.        .+...+.++++++.+
T Consensus        85 ~~Gl-~~~v~~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~-g~--------~~~~v~~~i~~~l~~  154 (501)
T 2jln_A           85 RWGI-NFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLT-GF--------TNLPLWIVIFGAIQV  154 (501)
T ss_dssp             HHCC-CHHHHTTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CC--------CCHHHHHHHHHHHHH
T ss_pred             hcCC-ChhhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Cc--------chHHHHHHHHHHHHH
Confidence            3444 5999999999999999999999999999999999999999988875421 10        012234555666666


Q ss_pred             HhhcCCCCCchhHHHHHHHH
Q 017226           84 ILSQAPDFHNIQSLSVIAAV  103 (375)
Q Consensus        84 pl~~~r~l~~L~~~S~~~~~  103 (375)
                      +..+ .-++.++++..++..
T Consensus       155 ~~~~-~G~~~i~~~~~~~~p  173 (501)
T 2jln_A          155 VTTF-YGITFIRWMNVFASP  173 (501)
T ss_dssp             HHHT-THHHHHHHHHHHHHH
T ss_pred             HHHH-hCHHHHHHHHHHHHH
Confidence            7764 456777777766654

>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}

Probab=95.72  E-value=0.41  Score=47.35  Aligned_cols=87  Identities=10%  Similarity=0.042  Sum_probs=46.7

Q ss_pred             CCCCCCHHHHHHHhhCcCcchhHHHHHHH-HHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHH
Q 017226            4 KSPSHNLKKEIINVSGKTNAWACSFFVHV-GLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQ   82 (375)
Q Consensus         4 ~~~~~sY~~l~~~~~G~~~~~~v~i~~~~-~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~   82 (375)
                      |.+..|..|.-++-||++.+.+..+...+ +.+.-+.+-+...+..++.++.              ++...-+++.+++.
T Consensus        79 ~~~~~T~~e~l~~Rfg~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G--------------i~~~~~i~i~~~i~  144 (530)
T 3dh4_A           79 EKGIYTIPEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG--------------IPLMYSILGLALFA  144 (530)
T ss_dssp             HTTCCSHHHHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--------------CCHHHHHHHHHHHH
T ss_pred             HcCCccHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHH
Confidence            45788999999999999888777665443 2222222223333333333321              22222344455566


Q ss_pred             HHhhcCCCCCchhHHHHHHHHH
Q 017226           83 LILSQAPDFHNIQSLSVIAAVM  104 (375)
Q Consensus        83 lpl~~~r~l~~L~~~S~~~~~~  104 (375)
                      .--+..--++...++..+=.+.
T Consensus       145 ~~Yt~~GGl~aV~~TD~iQ~~i  166 (530)
T 3dh4_A          145 LVYSIYGGLSAVVWTDVIQVFF  166 (530)
T ss_dssp             HHTTC------CCSHHHHHHHH
T ss_pred             HHHHHhcchHHHHHHHHHHHHH
Confidence            6777788888888887765543

>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A

Probab=94.25  E-value=1.6  Score=43.69  Aligned_cols=86  Identities=10%  Similarity=0.036  Sum_probs=49.3

Q ss_pred             CCCCCCHHHHHHHhhCcCcchhHHHHHHH-HHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHH
Q 017226            4 KSPSHNLKKEIINVSGKTNAWACSFFVHV-GLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQ   82 (375)
Q Consensus         4 ~~~~~sY~~l~~~~~G~~~~~~v~i~~~~-~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~   82 (375)
                      |.+..|..|.-++=||++.+.+..+...+ +.+....+.+...+..++.++.              ++...-+++.+++.
T Consensus       108 r~~~~T~~e~l~~Rfg~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G--------------i~~~~~i~i~~~i~  173 (593)
T 2xq2_A          108 EKGIYTIPEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG--------------IPLMYSILGLALFA  173 (593)
T ss_dssp             HTTCCSHHHHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHH
T ss_pred             hCCCCCcHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------ccHHHHHHHHHHHH
Confidence            45788999999999998877666655443 2332223333334555555442              12222334455666


Q ss_pred             HHhhcCCCCCchhHHHHHHHH
Q 017226           83 LILSQAPDFHNIQSLSVIAAV  103 (375)
Q Consensus        83 lpl~~~r~l~~L~~~S~~~~~  103 (375)
                      .-.+..--++...++-.+=.+
T Consensus       174 ~~Yt~~GGl~av~~TD~iQ~i  194 (593)
T 2xq2_A          174 LVYSIYGGLSAVVWTDVIQVF  194 (593)
T ss_dssp             HHHHHTTC---CCHHHHHHHH
T ss_pred             HHHHHhcchHHHHHHHHHHHH
Confidence            677788888888877765544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00