Citrus Sinensis ID: 017229

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-----
MASRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLALSDDLVKSNSFVESVSHKIRRQIEELERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPEDIITSEHLVTLLAVVPKYSQKDWLASYETLTSYVVPRSSKLLYEDNEYALYTVTLFGRVADNFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANSTFWKSEDDGGMMAGLGGDADSHPYVSFTINLV
ccccEEEEEEcccccHHHHHHHHHHHHHccccccccEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEEEccccHHHHHHHHccccccccccccccccccccEEEEEEEEEcccHHHHHHHHHHccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccccHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEEEEc
cccEEEEEEccccccHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccccccHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHcccHHHccccHHHHEEEEEccHHHHHHHHHHHHHHHcccccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEEEEEc
masrywvvslpvqnsAASVWNRLQEQIskhsfdtplyrfnipnlrvgTLDSLLALSDDLVKSNSFVESVSHKIRRQIEELErvsgiessslsvdgvpvdtyltrfvwdeakyptmsplREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINrkqsgslavrdlsnlvkpediitSEHLVTLLAVVPKYSQKDWLASYETLTSyvvprsskllyedneYALYTVTLFGRVADNFRIAAREKGfqirdfeysseAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESIlryglppsflacvlapsvkgeKKVRSILEELCGnanstfwkseddggmmaglggdadshpyVSFTINLV
MASRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLALSDDLVKSnsfvesvshkirrQIEElervsgiessslsvdgvpvDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRsqlnainrkqsgslavRDLSNLVKPEDIITSEHLVTLLAVVPKYSQKDWLASYETLTSYVVPRSSKLLYEDNEYALYTVTLFGRVADNFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANSTFWKSEDDGGMMAGLggdadshpyvsfTINLV
MASRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTldsllalsddlVKSNSFVESVSHKIRRQIEELERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPEDIITSEHLVTLLAVVPKYSQKDWLASYETLTSYVVPRSSKLLYEDNEYALYTVTLFGRVADNFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANSTFWKSEddggmmaglggdadSHPYVSFTINLV
****YWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLALSDDLVKSNSFVESVSHKIRRQIE*L*********SLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPEDIITSEHLVTLLAVVPKYSQKDWLASYETLTSYVVPRSSKLLYEDNEYALYTVTLFGRVADNFRIAAREKGFQIRDF*************************SSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANSTFWK****************************
MASRYWVVSLPVQNSAASVWNR*QEQISKHSFDTPLYRFNIPNLRVGTLDSLLALSDDLVKSNSFVESVSHKIRRQIEE**********SLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNN**************SLAVRDLSNLVKPEDIITSEHLVTLLAVVPKYSQKDWLASYETLTSYVVPRSSKLLYEDNEYALYTVTLFGRVADNFRIAAREKGFQIRDFE***********************RSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACV**************LEELCGN******************GGDADSHPYVSFTINLV
MASRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLALSDDLVKSNSFVESVSHKIRRQIEELERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPEDIITSEHLVTLLAVVPKYSQKDWLASYETLTSYVVPRSSKLLYEDNEYALYTVTLFGRVADNFRIAAREKGFQIRDFEY*********************LRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANSTFWKSEDDGGMMAGLGGDADSHPYVSFTINLV
*ASRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLALSDDLVKSNSFVESVSHKIRRQIEELERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPEDIITSEHLVTLLAVVPKYSQKDWLASYETLTSYVVPRSSKLLYEDNEYALYTVTLFGRVADNFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANSTFW******GMM****GDADSHPYVSFTINLV
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MASRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLALSDDLVKSNSFVESVSHKIRRQIEELERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPEDIITSEHLVTLLAVVPKYSQKDWLASYETLTSYVVPRSSKLLYEDNEYALYTVTLFGRVADNFRIAAREKGFQIRDFEYSxxxxxxxxxxxxxxxxxxxxxRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANSTFWKSEDDGGMMAGLGGDADSHPYVSFTINLV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query375 2.2.26 [Sep-21-2011]
Q9SDS7375 V-type proton ATPase subu yes no 0.997 0.997 0.847 0.0
Q9SCB9354 V-type proton ATPase subu N/A no 0.848 0.898 0.707 1e-131
Q7T385383 V-type proton ATPase subu yes no 0.989 0.968 0.397 3e-77
Q9U5N1385 V-type proton ATPase subu N/A no 0.984 0.958 0.394 5e-76
Q5RDQ7382 V-type proton ATPase subu yes no 0.989 0.971 0.401 2e-75
Q4R5H9382 V-type proton ATPase subu N/A no 0.989 0.971 0.401 2e-75
P21283382 V-type proton ATPase subu yes no 0.989 0.971 0.401 2e-75
Q5FVI6382 V-type proton ATPase subu yes no 0.989 0.971 0.398 5e-75
Q9Z1G3382 V-type proton ATPase subu yes no 0.989 0.971 0.398 6e-75
P21282382 V-type proton ATPase subu yes no 0.989 0.971 0.398 7e-75
>sp|Q9SDS7|VATC_ARATH V-type proton ATPase subunit C OS=Arabidopsis thaliana GN=VHA-C PE=1 SV=1 Back     alignment and function desciption
 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/374 (84%), Positives = 347/374 (92%)

Query: 1   MASRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLALSDDLV 60
           M SRYWVVSLPV++SA+S+WNRLQEQISKHSFDTP+YRFNIPNLRVGTLDSLLAL DDL+
Sbjct: 1   MTSRYWVVSLPVKDSASSLWNRLQEQISKHSFDTPVYRFNIPNLRVGTLDSLLALGDDLL 60

Query: 61  KSNSFVESVSHKIRRQIEELERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLRE 120
           KSNSFVE VS KIRRQIEELER+SG+ES++L+VDGVPVD+YLTRFVWDEAKYPTMSPL+E
Sbjct: 61  KSNSFVEGVSQKIRRQIEELERISGVESNALTVDGVPVDSYLTRFVWDEAKYPTMSPLKE 120

Query: 121 IVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPEDIITSEH 180
           +VD I + VAKIEDDLKVRVAEYNN+R QLNAINRKQSGSLAVRDLSNLVKPEDI+ SEH
Sbjct: 121 VVDNIQSQVAKIEDDLKVRVAEYNNIRGQLNAINRKQSGSLAVRDLSNLVKPEDIVESEH 180

Query: 181 LVTLLAVVPKYSQKDWLASYETLTSYVVPRSSKLLYEDNEYALYTVTLFGRVADNFRIAA 240
           LVTLLAVVPKYSQKDWLA YETLT YVVPRSSK L+EDNEYALYTVTLF RVADNFRIAA
Sbjct: 181 LVTLLAVVPKYSQKDWLACYETLTDYVVPRSSKKLFEDNEYALYTVTLFTRVADNFRIAA 240

Query: 241 REKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVR 300
           REKGFQ+RDFE S EAQE+R QEL KLV DQESLRSSLLQWCYTSYGEVFSSWMHFCAVR
Sbjct: 241 REKGFQVRDFEQSVEAQETRKQELAKLVQDQESLRSSLLQWCYTSYGEVFSSWMHFCAVR 300

Query: 301 VFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANSTFWKSEDDGGMMAGLGG 360
            FAESI+RYGLPP+FLACVL+P+VK EKKVRSILE LC + NS +WKSE+D G MAGL G
Sbjct: 301 TFAESIMRYGLPPAFLACVLSPAVKSEKKVRSILERLCDSTNSLYWKSEEDAGAMAGLAG 360

Query: 361 DADSHPYVSFTINL 374
           D+++HPYVSFTINL
Sbjct: 361 DSETHPYVSFTINL 374
Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SCB9|VATC_HORVU V-type proton ATPase subunit C OS=Hordeum vulgare GN=VATC PE=1 SV=1 Back     alignment and function description
>sp|Q7T385|VTC1A_DANRE V-type proton ATPase subunit C 1-A OS=Danio rerio GN=atp6v1c1a PE=2 SV=1 Back     alignment and function description
>sp|Q9U5N1|VATC_MANSE V-type proton ATPase subunit C OS=Manduca sexta PE=2 SV=1 Back     alignment and function description
>sp|Q5RDQ7|VATC1_PONAB V-type proton ATPase subunit C 1 OS=Pongo abelii GN=ATP6V1C1 PE=2 SV=1 Back     alignment and function description
>sp|Q4R5H9|VATC1_MACFA V-type proton ATPase subunit C 1 OS=Macaca fascicularis GN=ATP6V1C1 PE=2 SV=1 Back     alignment and function description
>sp|P21283|VATC1_HUMAN V-type proton ATPase subunit C 1 OS=Homo sapiens GN=ATP6V1C1 PE=1 SV=4 Back     alignment and function description
>sp|Q5FVI6|VATC1_RAT V-type proton ATPase subunit C 1 OS=Rattus norvegicus GN=Atp6v1c1 PE=2 SV=1 Back     alignment and function description
>sp|Q9Z1G3|VATC1_MOUSE V-type proton ATPase subunit C 1 OS=Mus musculus GN=Atp6v1c1 PE=1 SV=4 Back     alignment and function description
>sp|P21282|VATC1_BOVIN V-type proton ATPase subunit C 1 OS=Bos taurus GN=ATP6V1C1 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query375
18391442375 V-type proton ATPase subunit C [Arabidop 0.997 0.997 0.847 0.0
111154399377 vacuolar H+-ATPase subunit C [Gossypium 0.997 0.992 0.877 0.0
356498582375 PREDICTED: V-type proton ATPase subunit 1.0 1.0 0.861 0.0
225451579375 PREDICTED: V-type proton ATPase subunit 1.0 1.0 0.858 0.0
356559482375 PREDICTED: V-type proton ATPase subunit 1.0 1.0 0.856 0.0
297844184378 de-etiolated 3 [Arabidopsis lyrata subsp 0.997 0.989 0.835 0.0
255543599376 vacuolar ATP synthase subunit C, putativ 0.997 0.994 0.893 0.0
242091583377 hypothetical protein SORBIDRAFT_09g03062 0.997 0.992 0.801 0.0
225456459375 PREDICTED: V-type proton ATPase subunit 1.0 1.0 0.850 0.0
115465801377 Os05g0593100 [Oryza sativa Japonica Grou 0.997 0.992 0.796 0.0
>gi|18391442|ref|NP_563916.1| V-type proton ATPase subunit C [Arabidopsis thaliana] gi|12585488|sp|Q9SDS7.1|VATC_ARATH RecName: Full=V-type proton ATPase subunit C; Short=V-ATPase subunit C; AltName: Full=Vacuolar H(+)-ATPase subunit C; AltName: Full=Vacuolar proton pump subunit C gi|6636332|gb|AAF20146.1|AF208261_1 vacuolar ATP synthase subunit C [Arabidopsis thaliana] gi|8698731|gb|AAF78489.1|AC012187_9 Identical to vacuolar ATP sythase subunit C (DET3) from Arabidopsis thaliana gb|AF208261. ESTs gb|AA067533, gb|Z37481, gb|AA721838, gb|Z37180, gb|T21206 come from this gene [Arabidopsis thaliana] gi|12248023|gb|AAG50103.1|AF334725_1 putative vacuolar ATP synthase subunit C [Arabidopsis thaliana] gi|16649005|gb|AAL24354.1| Identical to vacuolar ATP sythase subunit C (DET3) [Arabidopsis thaliana] gi|20259972|gb|AAM13333.1| vacuolar ATP sythase subunit C [Arabidopsis thaliana] gi|225897918|dbj|BAH30291.1| hypothetical protein [Arabidopsis thaliana] gi|332190815|gb|AEE28936.1| V-type proton ATPase subunit C [Arabidopsis thaliana] Back     alignment and taxonomy information
 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/374 (84%), Positives = 347/374 (92%)

Query: 1   MASRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLALSDDLV 60
           M SRYWVVSLPV++SA+S+WNRLQEQISKHSFDTP+YRFNIPNLRVGTLDSLLAL DDL+
Sbjct: 1   MTSRYWVVSLPVKDSASSLWNRLQEQISKHSFDTPVYRFNIPNLRVGTLDSLLALGDDLL 60

Query: 61  KSNSFVESVSHKIRRQIEELERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLRE 120
           KSNSFVE VS KIRRQIEELER+SG+ES++L+VDGVPVD+YLTRFVWDEAKYPTMSPL+E
Sbjct: 61  KSNSFVEGVSQKIRRQIEELERISGVESNALTVDGVPVDSYLTRFVWDEAKYPTMSPLKE 120

Query: 121 IVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPEDIITSEH 180
           +VD I + VAKIEDDLKVRVAEYNN+R QLNAINRKQSGSLAVRDLSNLVKPEDI+ SEH
Sbjct: 121 VVDNIQSQVAKIEDDLKVRVAEYNNIRGQLNAINRKQSGSLAVRDLSNLVKPEDIVESEH 180

Query: 181 LVTLLAVVPKYSQKDWLASYETLTSYVVPRSSKLLYEDNEYALYTVTLFGRVADNFRIAA 240
           LVTLLAVVPKYSQKDWLA YETLT YVVPRSSK L+EDNEYALYTVTLF RVADNFRIAA
Sbjct: 181 LVTLLAVVPKYSQKDWLACYETLTDYVVPRSSKKLFEDNEYALYTVTLFTRVADNFRIAA 240

Query: 241 REKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVR 300
           REKGFQ+RDFE S EAQE+R QEL KLV DQESLRSSLLQWCYTSYGEVFSSWMHFCAVR
Sbjct: 241 REKGFQVRDFEQSVEAQETRKQELAKLVQDQESLRSSLLQWCYTSYGEVFSSWMHFCAVR 300

Query: 301 VFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANSTFWKSEDDGGMMAGLGG 360
            FAESI+RYGLPP+FLACVL+P+VK EKKVRSILE LC + NS +WKSE+D G MAGL G
Sbjct: 301 TFAESIMRYGLPPAFLACVLSPAVKSEKKVRSILERLCDSTNSLYWKSEEDAGAMAGLAG 360

Query: 361 DADSHPYVSFTINL 374
           D+++HPYVSFTINL
Sbjct: 361 DSETHPYVSFTINL 374

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|111154399|gb|ABH07428.1| vacuolar H+-ATPase subunit C [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|356498582|ref|XP_003518129.1| PREDICTED: V-type proton ATPase subunit C-like [Glycine max] Back     alignment and taxonomy information
>gi|225451579|ref|XP_002275510.1| PREDICTED: V-type proton ATPase subunit C [Vitis vinifera] gi|296082286|emb|CBI21291.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356559482|ref|XP_003548028.1| PREDICTED: V-type proton ATPase subunit C-like [Glycine max] Back     alignment and taxonomy information
>gi|297844184|ref|XP_002889973.1| de-etiolated 3 [Arabidopsis lyrata subsp. lyrata] gi|297335815|gb|EFH66232.1| de-etiolated 3 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255543599|ref|XP_002512862.1| vacuolar ATP synthase subunit C, putative [Ricinus communis] gi|223547873|gb|EEF49365.1| vacuolar ATP synthase subunit C, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|242091583|ref|XP_002441624.1| hypothetical protein SORBIDRAFT_09g030620 [Sorghum bicolor] gi|241946909|gb|EES20054.1| hypothetical protein SORBIDRAFT_09g030620 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|225456459|ref|XP_002284444.1| PREDICTED: V-type proton ATPase subunit C [Vitis vinifera] gi|297734491|emb|CBI15738.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|115465801|ref|NP_001056500.1| Os05g0593100 [Oryza sativa Japonica Group] gi|48475236|gb|AAT44305.1| putative vacuolar ATP synthase subunit C [Oryza sativa Japonica Group] gi|113580051|dbj|BAF18414.1| Os05g0593100 [Oryza sativa Japonica Group] gi|215692729|dbj|BAG88149.1| unnamed protein product [Oryza sativa Japonica Group] gi|215712329|dbj|BAG94456.1| unnamed protein product [Oryza sativa Japonica Group] gi|218197367|gb|EEC79794.1| hypothetical protein OsI_21221 [Oryza sativa Indica Group] gi|222632771|gb|EEE64903.1| hypothetical protein OsJ_19763 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query375
TAIR|locus:2010386375 DET3 "DE-ETIOLATED 3" [Arabido 0.997 0.997 0.799 4.6e-160
ZFIN|ZDB-GENE-030616-612383 atp6v1c1a "ATPase, H+ transpor 0.912 0.892 0.389 2.2e-66
UNIPROTKB|P21283382 ATP6V1C1 "V-type proton ATPase 0.912 0.895 0.395 3.2e-65
UNIPROTKB|Q4R5H9382 ATP6V1C1 "V-type proton ATPase 0.912 0.895 0.395 3.2e-65
UNIPROTKB|Q5RDQ7382 ATP6V1C1 "V-type proton ATPase 0.912 0.895 0.395 3.2e-65
UNIPROTKB|F1P0C1388 ATP6V1C1 "Uncharacterized prot 0.912 0.881 0.389 4.1e-65
UNIPROTKB|E2RSK6404 ATP6V1C1 "Uncharacterized prot 0.912 0.846 0.395 4.1e-65
MGI|MGI:1913585382 Atp6v1c1 "ATPase, H+ transport 0.912 0.895 0.392 5.2e-65
RGD|1311082382 Atp6v1c1 "ATPase, H+ transport 0.912 0.895 0.392 5.2e-65
UNIPROTKB|P21282382 ATP6V1C1 "V-type proton ATPase 0.912 0.895 0.392 1.1e-64
TAIR|locus:2010386 DET3 "DE-ETIOLATED 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1559 (553.9 bits), Expect = 4.6e-160, P = 4.6e-160
 Identities = 299/374 (79%), Positives = 326/374 (87%)

Query:     1 MASRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXV 60
             M SRYWVVSLPV++SA+S+WNRLQEQISKHSFDTP+YRFNIPNLRVGT           +
Sbjct:     1 MTSRYWVVSLPVKDSASSLWNRLQEQISKHSFDTPVYRFNIPNLRVGTLDSLLALGDDLL 60

Query:    61 KSNSFVESVSHKIRRQIEELERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLRE 120
             KSNSFVE VS KIRRQIEELER+SG+ES++L+VDGVPVD+YLTRFVWDEAKYPTMSPL+E
Sbjct:    61 KSNSFVEGVSQKIRRQIEELERISGVESNALTVDGVPVDSYLTRFVWDEAKYPTMSPLKE 120

Query:   121 IVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPEDIITSEH 180
             +VD I + VAKIEDDLKVRVAEYNN+R QLNAINRKQSGSLAVRDLSNLVKPEDI+ SEH
Sbjct:   121 VVDNIQSQVAKIEDDLKVRVAEYNNIRGQLNAINRKQSGSLAVRDLSNLVKPEDIVESEH 180

Query:   181 LVTLLAVVPKYSQKDWLASYETLTSYVVPRSSKLLYEDNEYALYTVTLFGRVADNFRIAA 240
             LVTLLAVVPKYSQKDWLA YETLT YVVPRSSK L+EDNEYALYTVTLF RVADNFRIAA
Sbjct:   181 LVTLLAVVPKYSQKDWLACYETLTDYVVPRSSKKLFEDNEYALYTVTLFTRVADNFRIAA 240

Query:   241 REKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVR 300
             REKGFQ+RDFE S EAQE+R QEL KLV DQESLRSSLLQWCYTSYGEVFSSWMHFCAVR
Sbjct:   241 REKGFQVRDFEQSVEAQETRKQELAKLVQDQESLRSSLLQWCYTSYGEVFSSWMHFCAVR 300

Query:   301 VFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANSTFWKSEXXXXXXXXXXX 360
              FAESI+RYGLPP+FLACVL+P+VK EKKVRSILE LC + NS +WKSE           
Sbjct:   301 TFAESIMRYGLPPAFLACVLSPAVKSEKKVRSILERLCDSTNSLYWKSEEDAGAMAGLAG 360

Query:   361 XXXSHPYVSFTINL 374
                +HPYVSFTINL
Sbjct:   361 DSETHPYVSFTINL 374
GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA
GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA
GO:0000221 "vacuolar proton-transporting V-type ATPase, V1 domain" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0009826 "unidimensional cell growth" evidence=IMP
GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IGI
GO:0005773 "vacuole" evidence=IDA
GO:0009809 "lignin biosynthetic process" evidence=IGI
GO:0043255 "regulation of carbohydrate biosynthetic process" evidence=IGI
GO:0000325 "plant-type vacuole" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0000902 "cell morphogenesis" evidence=RCA
GO:0006007 "glucose catabolic process" evidence=RCA
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA
GO:0006816 "calcium ion transport" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0007033 "vacuole organization" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0009853 "photorespiration" evidence=RCA
GO:0009932 "cell tip growth" evidence=RCA
GO:0016049 "cell growth" evidence=RCA
GO:0016051 "carbohydrate biosynthetic process" evidence=RCA
GO:0030243 "cellulose metabolic process" evidence=RCA
GO:0048193 "Golgi vesicle transport" evidence=RCA
GO:0048765 "root hair cell differentiation" evidence=RCA
GO:0051788 "response to misfolded protein" evidence=RCA
GO:0080129 "proteasome core complex assembly" evidence=RCA
ZFIN|ZDB-GENE-030616-612 atp6v1c1a "ATPase, H+ transporting, lysosomal, V1 subunit C, isoform 1a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P21283 ATP6V1C1 "V-type proton ATPase subunit C 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q4R5H9 ATP6V1C1 "V-type proton ATPase subunit C 1" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RDQ7 ATP6V1C1 "V-type proton ATPase subunit C 1" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|F1P0C1 ATP6V1C1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2RSK6 ATP6V1C1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1913585 Atp6v1c1 "ATPase, H+ transporting, lysosomal V1 subunit C1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1311082 Atp6v1c1 "ATPase, H+ transporting, lysosomal V1 subunit C1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P21282 ATP6V1C1 "V-type proton ATPase subunit C 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6P4Y9VATC1_XENTRNo assigned EC number0.39030.98930.9712yesno
P54648VATC_DICDINo assigned EC number0.36550.94930.9673yesno
Q9XXU9VATC_CAEELNo assigned EC number0.39050.98130.9583yesno
Q9SDS7VATC_ARATHNo assigned EC number0.84750.99730.9973yesno
Q7T385VTC1A_DANRENo assigned EC number0.39730.98930.9686yesno
P21283VATC1_HUMANNo assigned EC number0.40100.98930.9712yesno
P21282VATC1_BOVINNo assigned EC number0.39830.98930.9712yesno
Q5FVI6VATC1_RATNo assigned EC number0.39830.98930.9712yesno
P31412VATC_YEASTNo assigned EC number0.34390.89330.8545yesno
Q9Z1G3VATC1_MOUSENo assigned EC number0.39830.98930.9712yesno
Q5RDQ7VATC1_PONABNo assigned EC number0.40100.98930.9712yesno
Q9SCB9VATC_HORVUNo assigned EC number0.70760.8480.8983N/Ano
Q9HDW6VATC_SCHPONo assigned EC number0.30900.9840.9365yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
DET3
DET3 (DE-ETIOLATED 3); proton-transporting ATPase, rotational mechanism; Encodes subunit C of the vacuolar H(+)-ATPase (V-ATPase). Bound and phosphorylated by AtWNK8. ; Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells (375 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
VHA-A
VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A); ATP binding / hydrogen ion transporting ATP synthase, [...] (623 aa)
   •••• 0.995
AT3G58730
vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (V [...] (261 aa)
   •••• 0.992
WNK8
WNK8 (WITH NO LYSINE (K) KINASE 8); kinase/ protein kinase; Encodes a member of the WNK family [...] (563 aa)
    • • 0.984
AT3G42050
vacuolar ATP synthase subunit H family protein; vacuolar ATP synthase subunit H family protein; [...] (441 aa)
   • •• 0.983
VHA-A3
VHA-A3 (VACUOLAR PROTON ATPASE A3); ATPase; Vacuolar proton ATPase subunit VHA-a isoform 3. Loc [...] (821 aa)
   •••• 0.973
VHA-A2
VHA-A2 (VACUOLAR PROTON ATPASE A2); ATPase; Vacuolar proton ATPase subunit VHA-a isoform 2. Loc [...] (821 aa)
    ••• 0.966
VHA-A1
VHA-A1 (VACUOLAR PROTON ATPASE A 1); ATPase; Vacuolar proton ATPase subunit VHA-a isoform 1. Lo [...] (817 aa)
    ••• 0.951
VHA-E2
VHA-E2 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 2); hydrogen-exporting ATPase, phosphorylative mec [...] (235 aa)
   •••• 0.951
VATF
vacuolar ATPase subunit F family protein; vacuolar ATPase subunit F family protein; FUNCTIONS I [...] (128 aa)
   •••• 0.949
TUF
TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1); proton-transporting ATPase, rotational mechanism; Encod [...] (230 aa)
   •••• 0.939

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query375
pfam03223371 pfam03223, V-ATPase_C, V-ATPase subunit C 1e-162
COG5127383 COG5127, COG5127, Vacuolar H+-ATPase V1 sector, su 7e-70
>gnl|CDD|217433 pfam03223, V-ATPase_C, V-ATPase subunit C Back     alignment and domain information 
 Score =  459 bits (1183), Expect = e-162
 Identities = 179/371 (48%), Positives = 247/371 (66%), Gaps = 7/371 (1%)

Query: 5   YWVVSLPVQNS---AASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLALSDDLVK 61
           YW+VSLPV  +   A  +W  L    S  S  + + +FNIP+L+VGTLDSL+ LSD+L K
Sbjct: 1   YWLVSLPVLKTDSQANQIWKELLLVSSLGSNLSNVSKFNIPDLKVGTLDSLVTLSDELGK 60

Query: 62  SNSFVESVSHKIRRQIEEL-ERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLRE 120
            ++ VE V  KI R + EL E   G  SS+L V+ V +D YLTRF WD AKYPT   L+E
Sbjct: 61  LDTQVEGVLKKIERILRELLEDQGGKLSSTLRVNDVSLDQYLTRFQWDSAKYPTKQSLKE 120

Query: 121 IVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPEDII-TSE 179
           +VD +   VA+I++DL+ + AEYNN +S L A+ RKQ+G+L+VR L+++VKPED +  SE
Sbjct: 121 LVDLLSKEVAQIDNDLRSKSAEYNNAKSNLAALERKQTGNLSVRSLADIVKPEDFVLDSE 180

Query: 180 HLVTLLAVVPKYSQKDWLASYETLTSYVVPRSSKLLYEDNEYALYTVTLFGRVADNFRIA 239
           +L T+L  VPK S KD+LASYETL+  VVPRS+K++ ED+EYAL+TVTLF +V ++F+  
Sbjct: 181 YLTTVLVAVPKNSVKDFLASYETLSDMVVPRSAKVIAEDDEYALFTVTLFKKVVEDFKTK 240

Query: 240 AREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAV 299
            REK F +RDF+YS E  E   +E  KL  D++    +LL+    ++ EVF +W+H  A+
Sbjct: 241 CREKKFIVRDFKYSEELSEEEKRERTKLATDEKKQEGALLRLLRVAFSEVFIAWIHLKAL 300

Query: 300 RVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGN-ANSTF-WKSEDDGGMMAG 357
           RVF ES+LRYGLPP+F A ++ P  K EKKVR IL +L G    +   +  + D      
Sbjct: 301 RVFVESVLRYGLPPNFQAVLIQPDKKKEKKVRKILNQLFGYLGGNAASYDKDGDIVDDPS 360

Query: 358 LGGDADSHPYV 368
           L GD + +PYV
Sbjct: 361 LLGDEEYYPYV 371

Length = 371
>gnl|CDD|227456 COG5127, COG5127, Vacuolar H+-ATPase V1 sector, subunit C [Energy production and conversion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 375
KOG2909381 consensus Vacuolar H+-ATPase V1 sector, subunit C 100.0
PF03223371 V-ATPase_C: V-ATPase subunit C; InterPro: IPR00490 100.0
COG5127383 Vacuolar H+-ATPase V1 sector, subunit C [Energy pr 100.0
PRK05771 646 V-type ATP synthase subunit I; Validated 97.37
PF01496 759 V_ATPase_I: V-type ATPase 116kDa subunit family ; 95.61
>KOG2909 consensus Vacuolar H+-ATPase V1 sector, subunit C [Energy production and conversion] Back     alignment and domain information 
Probab=100.00  E-value=2.8e-131  Score=953.29  Aligned_cols=373  Identities=46%  Similarity=0.787  Sum_probs=360.1

Q ss_pred             CceEEEEeecCCCC-hHHHHHHHHHHhccCCCCCCceeccCCCCCCCChhhhHhhhhhhHhhhhhHHHHHHHHHHHHHHh
Q 017229            2 ASRYWVVSLPVQNS-AASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLALSDDLVKSNSFVESVSHKIRRQIEEL   80 (375)
Q Consensus         2 ~~~~~LvslP~~~~-~~~~~~~L~~~~~~~~~~~~~~~f~iP~fKvGTLDsLv~lsDeL~K~D~~~e~~v~Ki~~~~~~l   80 (375)
                      |++|||||+|++++ +.++|+.+...+++.+..+.+++|+||+|||||||+||++||||+|+|++||++++||.+++.+.
T Consensus         1 Ms~fwliSlP~~~~~~~~~~d~i~~~~sk~s~~~~vs~F~IP~fkvgsLD~Lv~~se~L~Kld~~~e~~i~ki~~~~~~~   80 (381)
T KOG2909|consen    1 MSEFWLISLPGEKTGNQQTWDRINDLTSKRSNLSTVSKFNIPDFKVGSLDVLVGLSEELGKLDTFVEGLIKKIAGYLKEV   80 (381)
T ss_pred             CcceEEEeCCcCCcccccHHHHHHHHHhccccccccccccCCCcccccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            56999999999766 78999999999988877899999999999999999999999999999999999999999999888


Q ss_pred             hcc-ccccccceeECCCChhhhhcccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCC
Q 017229           81 ERV-SGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSG  159 (375)
Q Consensus        81 ~~~-~~~~~~~l~v~~~~~~~Yl~~F~Wd~aKyp~~~~l~elv~~i~~ev~~id~dlk~k~~~Yn~~K~~l~~~~RK~~G  159 (375)
                      +++ ++++.+++.+||+|+++|+++|+||++|||.++||++++++|+++++|||+|+|+|+++||++|+||++++||++|
T Consensus        81 le~~s~~~~~~l~~n~~~~~ey~t~F~Wd~akf~~~~si~~iid~I~~e~~qie~Dlk~r~a~yn~ak~nl~nlerK~~G  160 (381)
T KOG2909|consen   81 LEDSSGKVGENLMANGVPLPEYLTRFQWDMAKFPTNQSIKEIIDLISKEIAQIENDLKTRAAAYNNAKGNLQNLERKKTG  160 (381)
T ss_pred             HhhcccchhhceeeCCcCHHHHHhHheehhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhccC
Confidence            875 7778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCccCCCCCCcc-ccCcceEEEEEecCCChHHHHHHhcccCCccccCCcccccccCCeeEEEEEEecccHHHHHH
Q 017229          160 SLAVRDLSNLVKPEDII-TSEHLVTLLAVVPKYSQKDWLASYETLTSYVVPRSSKLLYEDNEYALYTVTLFGRVADNFRI  238 (375)
Q Consensus       160 nL~~rsL~diV~~edfv-dsEyLtTllV~VPk~~~~~w~~~YEtL~~~VVPrSs~~i~eD~e~~L~~V~lFkk~~~eF~~  238 (375)
                      ||++|||++||+||||| |||||+|++|||||++++||+++||||++||||||+++|.||+||.||+||||||.+|+|++
T Consensus       161 sL~~rsL~~IVk~edfvl~SEyL~tllVvVPK~~~~df~~~YEtlsd~VvPrSskki~eD~Ey~Lf~V~lFkk~~edFr~  240 (381)
T KOG2909|consen  161 SLSTRSLADIVKKEDFVLDSEYLTTLLVVVPKALVKDFLKSYETLSDMVVPRSSKKINEDAEYVLFTVTLFKKVAEDFRT  240 (381)
T ss_pred             ChhhhhHHHhCCchhhccchhhheeEEEEeeccchHHHHHHHHhhccccchhhhhhcccccceEEEEEEEeehhHHHHHH
Confidence            99999999999999999 99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCeeccCcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhccCCCCceEE
Q 017229          239 AAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLAC  318 (375)
Q Consensus       239 ~~re~kf~vRdF~y~ee~~~~~~~e~~~l~~~~~~~~~~L~r~~~~~fse~f~awiHiKalRvFVESVLRYGLP~~F~~~  318 (375)
                      +|||+||+||||.|++++++++++|++++++++++|+++|+|||++||||+|++|||||||||||||||||||||+|+++
T Consensus       241 ~ArE~kF~vRdF~y~ee~~e~~k~E~~ra~~~~k~~~~~Llr~~kv~fsEvF~~wiHiKaLRvfVESVlRYGLP~~F~a~  320 (381)
T KOG2909|consen  241 KAREKKFIVRDFDYNEEEIETEKAEMDRAATDKKSMRGPLLRWLKVNFSEVFIAWIHIKALRVFVESVLRYGLPPNFQAV  320 (381)
T ss_pred             HHHHcCCceeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCChHHHHHHHHHHhcCCCCCCCcC-CCCCCccCCCCCCCcccceEEEEEecC
Q 017229          319 VLAPSVKGEKKVRSILEELCGNANSTFWKS-EDDGGMMAGLGGDADSHPYVSFTINLV  375 (375)
Q Consensus       319 li~p~~k~~kkl~~~L~~~f~~l~~~~~~~-~~~~~~~~g~~~~~ey~pyV~~~i~~~  375 (375)
                      +++|++|+.+|+|.+|.++|+|||+++++. |.+.+ |||+.+++||+|||+|+|++.
T Consensus       321 ~~~p~kKs~~k~r~iL~~~~~~ld~~~~~~~da~~~-~~glnld~ey~PfV~~~I~~~  377 (381)
T KOG2909|consen  321 LLQPNKKSEKKLRSILISLYGHLDSNAAAVYDASVD-IPGLNLDEEYFPFVFFTINLY  377 (381)
T ss_pred             eecCCchhHHHHHHHHHHHhccccccchhhcccccc-CCCCCCCCceeeEEEEEeccc
Confidence            999999999999999999999999998743 33345 999988899999999999873

>PF03223 V-ATPase_C: V-ATPase subunit C; InterPro: IPR004907 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>COG5127 Vacuolar H+-ATPase V1 sector, subunit C [Energy production and conversion] Back     alignment and domain information
>PRK05771 V-type ATP synthase subunit I; Validated Back     alignment and domain information
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query375
1u7l_A392 Crystal Structure Of Subunit C (Vma5p) Of The Yeast 3e-48
4dl0_I130 Crystal Structure Of The Heterotrimeric Egchead Per 4e-22
>pdb|1U7L|A Chain A, Crystal Structure Of Subunit C (Vma5p) Of The Yeast V-Atpase Length = 392 Back     alignment and structure 
Iteration: 1

 Score =  189 bits (479), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 170/308 (55%), Gaps = 5/308 (1%)
Query: 39  FNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEELERVSGIESSSLSVDGVPV 98
           F IP  ++G+            K ++ + +   KI   ++ L   S     +L ++ +PV
Sbjct: 48  FKIPEFKIGSLDTLIVESEELSKVDNQIGASIGKIIEILQGLNETSTNAYRTLPINNMPV 107
Query: 99  DTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQS 158
             YL  F W   K+     +++++  I    ++++ D++   A YN+ ++ L A  RK++
Sbjct: 108 PEYLENFQWQTRKFKLDKSIKDLITLISNESSQLDADVRATYANYNSAKTNLAAAERKKT 167
Query: 159 GSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSQKDWLASYETLTSYVVPRSSKLLYE 217
           G L+VR L ++VKPED ++ SEHL T+L  VPK  + D+  SYETL+  VVP S+ ++ E
Sbjct: 168 GDLSVRSLHDIVKPEDFVLNSEHLTTVLVAVPKSLKSDFEKSYETLSKNVVPASASVIAE 227
Query: 218 DNEYALYTVTLFGRVADNFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSS 277
           D EY L+ V LF +    F  AAREK F  R+F YS E  +   +E +     ++SLR  
Sbjct: 228 DAEYVLFNVHLFKKNVQEFTTAAREKKFIPREFNYSEELIDQLKKEHDSAASLEQSLRVQ 287
Query: 278 LLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEE- 336
           L++   T+Y +VF +W H  A+RV+ ES+LRYGLPP F   ++A   K   K +S L + 
Sbjct: 288 LVRLAKTAYVDVFINWFHIKALRVYVESVLRYGLPPHFNIKIIAVPPKNLSKCKSELIDA 347
Query: 337 ---LCGNA 341
              L GNA
Sbjct: 348 FGFLGGNA 355
>pdb|4DL0|I Chain I, Crystal Structure Of The Heterotrimeric Egchead Peripheral Stalk Complex Of The Yeast Vacuolar Atpase Length = 130 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query375
1u7l_A392 Vacuolar ATP synthase subunit C; hydrolase, struct 1e-152
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-07
>1u7l_A Vacuolar ATP synthase subunit C; hydrolase, structural protein; HET: TLA; 1.75A {Saccharomyces cerevisiae} SCOP: e.57.1.1 Length = 392 Back     alignment and structure
 Score =  434 bits (1118), Expect = e-152
 Identities = 123/386 (31%), Positives = 202/386 (52%), Gaps = 12/386 (3%)

Query: 1   MASRYWVVSLPVQNSAASVWNRLQEQISKHSFD---TPLYRFNIPNLRVGTLDSLLALSD 57
            A+ + ++SLP      +      +     +       +  F IP  ++G+LD+L+  S+
Sbjct: 7   TANDFILISLPQNAQPVTAPGSKTDSWFNETLIGGRAFVSDFKIPEFKIGSLDTLIVESE 66

Query: 58  DLVKSNSFVESVSHKIRRQIEELERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSP 117
           +L K ++ + +   KI   ++ L   S     +L ++ +PV  YL  F W   K+     
Sbjct: 67  ELSKVDNQIGASIGKIIEILQGLNETSTNAYRTLPINNMPVPEYLENFQWQTRKFKLDKS 126

Query: 118 LREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-II 176
           +++++  I    ++++ D++   A YN+ ++ L A  RK++G L+VR L ++VKPED ++
Sbjct: 127 IKDLITLISNESSQLDADVRATYANYNSAKTNLAAAERKKTGDLSVRSLHDIVKPEDFVL 186

Query: 177 TSEHLVTLLAVVPKYSQKDWLASYETLTSYVVPRSSKLLYEDNEYALYTVTLFGRVADNF 236
            SEHL T+L  VPK  + D+  SYETL+  VVP S+ ++ ED EY L+ V LF +    F
Sbjct: 187 NSEHLTTVLVAVPKSLKSDFEKSYETLSKNVVPASASVIAEDAEYVLFNVHLFKKNVQEF 246

Query: 237 RIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHF 296
             AAREK F  R+F YS E  +   +E +     ++SLR  L++   T+Y +VF +W H 
Sbjct: 247 TTAAREKKFIPREFNYSEELIDQLKKEHDSAASLEQSLRVQLVRLAKTAYVDVFINWFHI 306

Query: 297 CAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGN-ANSTFWK-------S 348
            A+RV+ ES+LRYGLPP F   ++A   K   K +S L +  G    + F K        
Sbjct: 307 KALRVYVESVLRYGLPPHFNIKIIAVPPKNLSKCKSELIDAFGFLGGNAFMKDKKGKINK 366

Query: 349 EDDGGMMAGLGGDADSHPYVSFTINL 374
           +D          D +  P+V + INL
Sbjct: 367 QDTSLHQYASLVDTEYEPFVMYIINL 392
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query375
1u7l_A392 Vacuolar ATP synthase subunit C; hydrolase, struct 100.0
3rrk_A357 V-type ATPase 116 kDa subunit; alpha beta fold, pr 96.96
>1u7l_A Vacuolar ATP synthase subunit C; hydrolase, structural protein; HET: TLA; 1.75A {Saccharomyces cerevisiae} SCOP: e.57.1.1 Back     alignment and structure
Probab=100.00  E-value=3.9e-132  Score=993.73  Aligned_cols=370  Identities=33%  Similarity=0.568  Sum_probs=340.5

Q ss_pred             CceEEEEeecCCCC----hHHHHHH-HHHHhccCCCCCCceeccCCCCCCCChhhhHhhhhhhHhhhhhHHHHHHHHHHH
Q 017229            2 ASRYWVVSLPVQNS----AASVWNR-LQEQISKHSFDTPLYRFNIPNLRVGTLDSLLALSDDLVKSNSFVESVSHKIRRQ   76 (375)
Q Consensus         2 ~~~~~LvslP~~~~----~~~~~~~-L~~~~~~~~~~~~~~~f~iP~fKvGTLDsLv~lsDeL~K~D~~~e~~v~Ki~~~   76 (375)
                      +++|||||+|.+++    ++++|+. |+..+++.  .+.+++|+||+|||||||+||+|||||+|+|++||++++||+++
T Consensus         8 ~~~y~LvSlP~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~f~IP~lkvGTLDsLv~lsDdL~Kld~~ve~v~~Ki~~~   85 (392)
T 1u7l_A            8 ANDFILISLPQNAQPVTAPGSKTDSWFNETLIGG--RAFVSDFKIPEFKIGSLDTLIVESEELSKVDNQIGASIGKIIEI   85 (392)
T ss_dssp             CCEEEEEEEETTCCCTTSTTCCHHHHHHHTGGGG--TSEEEECCCCCCBCSCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEccCCCCCCccHHHHHHHHHHhhccCC--CCccccccCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999998643    4488887 88887754  37889999999999999999999999999999999999999999


Q ss_pred             HHHhhcc-ccccccceeECCCChhhhhcccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017229           77 IEELERV-SGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINR  155 (375)
Q Consensus        77 ~~~l~~~-~~~~~~~l~v~~~~~~~Yl~~F~Wd~aKyp~~~~l~elv~~i~~ev~~id~dlk~k~~~Yn~~K~~l~~~~R  155 (375)
                      +++++++ .++..+++ +||+++++||++|+||++|||.++||+||+++|++++++||+|+|+|+++||++|++|++++|
T Consensus        86 ~~~~~~~~~~~~~~~l-vn~~~~~~yl~~F~Wd~aKyp~~~~L~elv~~i~~~v~~id~dlk~k~~~Yn~~K~~l~~~~R  164 (392)
T 1u7l_A           86 LQGLNETSTNAYRTLP-INNMPVPEYLENFQWQTRKFKLDKSIKDLITLISNESSQLDADVRATYANYNSAKTNLAAAER  164 (392)
T ss_dssp             HHHTTSSCSSSCCSCC-BTTBCHHHHHHTCCCCTTTSCTTSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhcchhhHHHHh-cCCCCHHHHHhhceeccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999865 45567788 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCccccccCccCCCCCCcc-ccCcceEEEEEecCCChHHHHHHhcccCCccccCCcccccccCCeeEEEEEEecccHH
Q 017229          156 KQSGSLAVRDLSNLVKPEDII-TSEHLVTLLAVVPKYSQKDWLASYETLTSYVVPRSSKLLYEDNEYALYTVTLFGRVAD  234 (375)
Q Consensus       156 K~~GnL~~rsL~diV~~edfv-dsEyLtTllV~VPk~~~~~w~~~YEtL~~~VVPrSs~~i~eD~e~~L~~V~lFkk~~~  234 (375)
                      |++|||++|||++||+||||| |||||||++|||||++++||+++||||++|||||||++|++|+||+||+||+|||+++
T Consensus       165 K~~GnL~~rsL~~iV~~edfv~dSEyL~TllVvVPk~~~~dwl~~YEtL~~~VVPrSs~~i~~D~ey~L~~VtlFkk~~~  244 (392)
T 1u7l_A          165 KKTGDLSVRSLHDIVKPEDFVLNSEHLTTVLVAVPKSLKSDFEKSYETLSKNVVPASASVIAEDAEYVLFNVHLFKKNVQ  244 (392)
T ss_dssp             HTCSCTTTSCCTTTCCGGGSCCSCSSEEEEEEEEEGGGHHHHHHHGGGSSTTBCTTCCEEEEECSSEEEEEEEEEGGGHH
T ss_pred             ccCCceeeeeHHHhcCHHHccCccccceEEEEEEeCccHHHHHHHHhhcCCCccCChhhhhhcCCCceEEEEEEEhhhHH
Confidence            999999999999999999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCeeccCcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhccCCCC
Q 017229          235 NFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPS  314 (375)
Q Consensus       235 eF~~~~re~kf~vRdF~y~ee~~~~~~~e~~~l~~~~~~~~~~L~r~~~~~fse~f~awiHiKalRvFVESVLRYGLP~~  314 (375)
                      ||+++|||+||+||||+|+|+.++++++|+++++++++++|++|+|||++||||+|++|||||||||||||||||||||+
T Consensus       245 eF~~~~Re~kf~vRdF~y~ee~~~~~~~e~~~l~~~~~~~~~~L~r~~~~~fse~f~awiHiKalRvFVESVLRYGLP~~  324 (392)
T 1u7l_A          245 EFTTAAREKKFIPREFNYSEELIDQLKKEHDSAASLEQSLRVQLVRLAKTAYVDVFINWFHIKALRVYVESVLRYGLPPH  324 (392)
T ss_dssp             HHHHHHHHTTCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC
T ss_pred             HHHHHHHHcCCccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhcCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEecCCCChHHHHHHHHHHhcCCCCCCCcCC-------CCCCccCCCC-CCCcccceEEEEEec
Q 017229          315 FLACVLAPSVKGEKKVRSILEELCGNANSTFWKSE-------DDGGMMAGLG-GDADSHPYVSFTINL  374 (375)
Q Consensus       315 F~~~li~p~~k~~kkl~~~L~~~f~~l~~~~~~~~-------~~~~~~~g~~-~~~ey~pyV~~~i~~  374 (375)
                      |++++|+|++|++||+|++|.++|+|||+++++.+       ++.++.+|+. +++||||||+|+|++
T Consensus       325 F~a~li~p~~k~~kKlr~~L~~~f~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ey~pyV~~~i~~  392 (392)
T 1u7l_A          325 FNIKIIAVPPKNLSKCKSELIDAFGFLGGNAFMKDKKGKINKQDTSLHQYASLVDTEYEPFVMYIINL  392 (392)
T ss_dssp             EEEEEEEECTTCHHHHHHHHHHHHGGGGCTTCC------------------------CCSSEEEEEEC
T ss_pred             ceEEEEEeCCccHHHHHHHHHHHhccccccccccccccccccccchhhccccCCCcccceeEEEEEeC
Confidence            99999999999999999999999999999888654       2222234543 478999999999985
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 375
d1u7la_388 e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Bak 1e-167
>d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Vacuolar ATP synthase subunit C
superfamily: Vacuolar ATP synthase subunit C
family: Vacuolar ATP synthase subunit C
domain: Vacuolar ATP synthase subunit C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  470 bits (1211), Expect = e-167
 Identities = 125/385 (32%), Positives = 203/385 (52%), Gaps = 12/385 (3%)

Query: 2   ASRYWVVSLPVQNSAASVWNRLQEQISKHSFD---TPLYRFNIPNLRVGTLDSLLALSDD 58
           A+ + ++SLP      +      +     +       +  F IP  ++G+LD+L+  S++
Sbjct: 4   ANDFILISLPQNAQPVTAPGSKTDSWFNETLIGGRAFVSDFKIPEFKIGSLDTLIVESEE 63

Query: 59  LVKSNSFVESVSHKIRRQIEELERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPL 118
           L K ++ + +   KI   ++ L   S     +L ++ +PV  YL  F W   K+     +
Sbjct: 64  LSKVDNQIGASIGKIIEILQGLNETSTNAYRTLPINNMPVPEYLENFQWQTRKFKLDKSI 123

Query: 119 REIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-IIT 177
           ++++  I    ++++ D++   A YN+ ++ L A  RK++G L+VR L ++VKPED ++ 
Sbjct: 124 KDLITLISNESSQLDADVRATYANYNSAKTNLAAAERKKTGDLSVRSLHDIVKPEDFVLN 183

Query: 178 SEHLVTLLAVVPKYSQKDWLASYETLTSYVVPRSSKLLYEDNEYALYTVTLFGRVADNFR 237
           SEHL T+L  VPK  + D+  SYETL+  VVP S+ ++ ED EY L+ V LF +    F 
Sbjct: 184 SEHLTTVLVAVPKSLKSDFEKSYETLSKNVVPASASVIAEDAEYVLFNVHLFKKNVQEFT 243

Query: 238 IAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFC 297
            AAREK F  R+F YS E  +   +E +     ++SLR  L++   T+Y +VF +W H  
Sbjct: 244 TAAREKKFIPREFNYSEELIDQLKKEHDSAASLEQSLRVQLVRLAKTAYVDVFINWFHIK 303

Query: 298 AVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEE----LCGNANSTFWKSE---- 349
           A+RV+ ES+LRYGLPP F   ++A   K   K +S L +    L GNA     K +    
Sbjct: 304 ALRVYVESVLRYGLPPHFNIKIIAVPPKNLSKCKSELIDAFGFLGGNAFMKDKKGKINKQ 363

Query: 350 DDGGMMAGLGGDADSHPYVSFTINL 374
           D          D +  P+V + INL
Sbjct: 364 DTSLHQYASLVDTEYEPFVMYIINL 388

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query375
d1u7la_388 Vacuolar ATP synthase subunit C {Baker's yeast (Sa 100.0
>d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Vacuolar ATP synthase subunit C
superfamily: Vacuolar ATP synthase subunit C
family: Vacuolar ATP synthase subunit C
domain: Vacuolar ATP synthase subunit C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.3e-131  Score=978.12  Aligned_cols=370  Identities=33%  Similarity=0.567  Sum_probs=341.0

Q ss_pred             CceEEEEeecCCCCh-----HHHHHHHHHHhccCCCCCCceeccCCCCCCCChhhhHhhhhhhHhhhhhHHHHHHHHHHH
Q 017229            2 ASRYWVVSLPVQNSA-----ASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLALSDDLVKSNSFVESVSHKIRRQ   76 (375)
Q Consensus         2 ~~~~~LvslP~~~~~-----~~~~~~L~~~~~~~~~~~~~~~f~iP~fKvGTLDsLv~lsDeL~K~D~~~e~~v~Ki~~~   76 (375)
                      .++|||||+|.+.++     ..+..|+.+.+++++  +.+++|+||+|||||||+||+|||||+|+|++||++++||+++
T Consensus         4 ~~~y~lvSlP~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~f~IP~lKvGTLDsLv~lsDeL~KlD~~ve~vv~Kv~~~   81 (388)
T d1u7la_           4 ANDFILISLPQNAQPVTAPGSKTDSWFNETLIGGR--AFVSDFKIPEFKIGSLDTLIVESEELSKVDNQIGASIGKIIEI   81 (388)
T ss_dssp             CCEEEEEEEETTCCCTTSTTCCHHHHHHHTGGGGT--SEEEECCCCCCBCSCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccceEEEECCCCCCCCCCchhhHHHHHHhcccCCC--ceeeecCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478999999986432     235567877776665  6689999999999999999999999999999999999999999


Q ss_pred             HHHhhccccccccceeECCCChhhhhcccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017229           77 IEELERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRK  156 (375)
Q Consensus        77 ~~~l~~~~~~~~~~l~v~~~~~~~Yl~~F~Wd~aKyp~~~~l~elv~~i~~ev~~id~dlk~k~~~Yn~~K~~l~~~~RK  156 (375)
                      +.++.++.++..+++.+||+++++||++|+||++|||.++||+||+++|++++++||+|+|+|+++||++|++|++++||
T Consensus        82 ~~~l~~~~~~~~~~l~v~~~~~~~yl~~F~Wd~aKyp~~~~l~elv~~i~~~~~~id~dlk~k~~~Yn~~K~~l~~~~RK  161 (388)
T d1u7la_          82 LQGLNETSTNAYRTLPINNMPVPEYLENFQWQTRKFKLDKSIKDLITLISNESSQLDADVRATYANYNSAKTNLAAAERK  161 (388)
T ss_dssp             HHHTTSSCSSSCCSCCBTTBCHHHHHHTCCCCTTTSCTTSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccchhhhheEeECCccHHHHhhheecccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99998877667789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccccCccCCCCCCcc-ccCcceEEEEEecCCChHHHHHHhcccCCccccCCcccccccCCeeEEEEEEecccHHH
Q 017229          157 QSGSLAVRDLSNLVKPEDII-TSEHLVTLLAVVPKYSQKDWLASYETLTSYVVPRSSKLLYEDNEYALYTVTLFGRVADN  235 (375)
Q Consensus       157 ~~GnL~~rsL~diV~~edfv-dsEyLtTllV~VPk~~~~~w~~~YEtL~~~VVPrSs~~i~eD~e~~L~~V~lFkk~~~e  235 (375)
                      ++|||++|||+|||+||||| |||||||++|||||++++||+++||||++|||||||++|++|+||+||+||+|||++++
T Consensus       162 ~~G~L~~r~L~diV~~ed~V~dSEyLtTllVvVPk~~~~dwl~~YEtL~~~VVPrSs~~i~~D~e~~L~~VtlFkk~~~e  241 (388)
T d1u7la_         162 KTGDLSVRSLHDIVKPEDFVLNSEHLTTVLVAVPKSLKSDFEKSYETLSKNVVPASASVIAEDAEYVLFNVHLFKKNVQE  241 (388)
T ss_dssp             TCSCTTTSCCTTTCCGGGSCCSCSSEEEEEEEEEGGGHHHHHHHGGGSSTTBCTTCCEEEEECSSEEEEEEEEEGGGHHH
T ss_pred             cCCceeeccHHhhCCHHHhccccccceEEEEEeecccHHHHHHHHhhhcCcccCChhhhceecCCeeEEEEEEEhhhHHH
Confidence            99999999999999999999 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCeeccCcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhccCCCCc
Q 017229          236 FRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSF  315 (375)
Q Consensus       236 F~~~~re~kf~vRdF~y~ee~~~~~~~e~~~l~~~~~~~~~~L~r~~~~~fse~f~awiHiKalRvFVESVLRYGLP~~F  315 (375)
                      |+++|||+||+||||+|+|+.++++++|++++++++++++++|+|||++||||+|++|||||||||||||||||||||+|
T Consensus       242 F~~~aRE~kf~vRdF~y~ee~~~~~~~e~~~l~~~~~~~~~~L~r~~~~~fse~f~~wiHiKalRvFVESVLRYGLP~~F  321 (388)
T d1u7la_         242 FTTAAREKKFIPREFNYSEELIDQLKKEHDSAASLEQSLRVQLVRLAKTAYVDVFINWFHIKALRVYVESVLRYGLPPHF  321 (388)
T ss_dssp             HHHHHHHTTCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCE
T ss_pred             HHHHHHHcCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhcCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEecCCCChHHHHHHHHHHhcCCCCCCCcCC-------CC--CCccCCCCCCCcccceEEEEEec
Q 017229          316 LACVLAPSVKGEKKVRSILEELCGNANSTFWKSE-------DD--GGMMAGLGGDADSHPYVSFTINL  374 (375)
Q Consensus       316 ~~~li~p~~k~~kkl~~~L~~~f~~l~~~~~~~~-------~~--~~~~~g~~~~~ey~pyV~~~i~~  374 (375)
                      ++++|+|++|++||+|++|.++|+||+|++++.+       ++  .++++| .+++||||||+|+|+|
T Consensus       322 ~~~li~p~~k~~kklr~~L~~~f~~L~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~ey~PyV~~~i~l  388 (388)
T d1u7la_         322 NIKIIAVPPKNLSKCKSELIDAFGFLGGNAFMKDKKGKINKQDTSLHQYAS-LVDTEYEPFVMYIINL  388 (388)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHGGGGCTTCC-------------------------CCSSEEEEEEC
T ss_pred             eEEEEeeCCchHHHHHHHHHHHhhcccccccccccccccCCCccccccccc-ccCCcccceEEEEecC
Confidence            9999999999999999999999999999988532       11  121222 3588999999999986