Citrus Sinensis ID: 017243

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-----
MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTCVK
cccccccccccccEEEEccccccccccccccccEEcccccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccc
ccccccccccccccEEEEcccEccHHHHHHHHccccccccEccccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccccHHHccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHcc
mkfgngayntmdngvlrfehvriprnqMLMRVSQVTregkyvqsnvprqllYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRqfgsknggpetqVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRlqandfstlpeaHACTAGLKSLTTTATADGIEECRKlcgghgylcssglpelfavyvpactyegdnIVLLLQVARFLMKTVSqlgygnmpvgtttYMGRAEQLMQchcgvqkaedwlnpSAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQqdipgkgvkPILEILCHIYALHLVHKHlgdfvstgciTAKQASLANEQLRSLYSQVFTCVK
mkfgngayntmdngvlRFEHVRIPRNQMLMRVSQVtregkyvqsnvprqllYGTMVYVRQTIVADASCALSRAVCIATRYSAVrrqfgsknggpetQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQlrslysqvftcvk
MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFaelaadlveaavaHCQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTCVK
*******YNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTC**
*KFG*GAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFG****GPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDV**************AHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVAC************GFAELAADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTCV*
MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTCVK
****NGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTCV*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTCVK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query375 2.2.26 [Sep-21-2011]
O65202664 Peroxisomal acyl-coenzyme yes no 0.984 0.555 0.831 0.0
Q9ZQP2664 Putative peroxisomal acyl no no 0.986 0.557 0.797 1e-180
P07872661 Peroxisomal acyl-coenzyme yes no 0.970 0.550 0.420 2e-77
Q5RC19660 Peroxisomal acyl-coenzyme yes no 0.970 0.551 0.409 3e-77
Q15067660 Peroxisomal acyl-coenzyme yes no 0.970 0.551 0.409 4e-77
Q9R0H0661 Peroxisomal acyl-coenzyme yes no 0.96 0.544 0.416 2e-76
Q8HYL8661 Peroxisomal acyl-coenzyme N/A no 0.962 0.546 0.401 3e-76
Q3SZP5660 Peroxisomal acyl-coenzyme yes no 0.970 0.551 0.401 8e-76
Q9Z1N0661 Peroxisomal acyl-coenzyme yes no 0.96 0.544 0.411 8e-74
Q99424681 Peroxisomal acyl-coenzyme no no 0.928 0.511 0.352 5e-55
>sp|O65202|ACOX1_ARATH Peroxisomal acyl-coenzyme A oxidase 1 OS=Arabidopsis thaliana GN=ACX1 PE=1 SV=1 Back     alignment and function desciption
 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/369 (83%), Positives = 337/369 (91%)

Query: 2   KFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQT 61
           K GNGAYN+MDNG L F+HVRIPR+QMLMR+S+VTREG+YV S+VP+QL+YGTMVYVRQT
Sbjct: 228 KMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLSKVTREGEYVPSDVPKQLVYGTMVYVRQT 287

Query: 62  IVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFV 121
           IVADAS ALSRAVCIATRYSAVRRQFG+ NGG ETQVIDYKTQQNRLFPLLASAYAFRFV
Sbjct: 288 IVADASNALSRAVCIATRYSAVRRQFGAHNGGIETQVIDYKTQQNRLFPLLASAYAFRFV 347

Query: 122 GEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS 181
           GEWLKWLYTDVT+RL A+DF+TLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYL  
Sbjct: 348 GEWLKWLYTDVTERLAASDFATLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLWC 407

Query: 182 SGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQC 241
           SGLPELFAVYVPACTYEGDN+VL LQVARFLMKTV+QLG G +PVGTT YMGRA  L+QC
Sbjct: 408 SGLPELFAVYVPACTYEGDNVVLQLQVARFLMKTVAQLGSGKVPVGTTAYMGRAAHLLQC 467

Query: 242 HCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHC 301
             GVQKAEDWLNP  +LEAFEARA+RM+V CA+NLSKF NQE+GF EL ADLVEAA+AHC
Sbjct: 468 RSGVQKAEDWLNPDVVLEAFEARALRMAVTCAKNLSKFENQEQGFQELLADLVEAAIAHC 527

Query: 302 QLIVVSKFIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANE 361
           QLIVVSKFI KL+QDI GKGVK  L  LC+IYAL+L+HKHLGDF+ST CIT KQASLAN+
Sbjct: 528 QLIVVSKFIAKLEQDIGGKGVKKQLNNLCYIYALYLLHKHLGDFLSTNCITPKQASLAND 587

Query: 362 QLRSLYSQV 370
           QLRSLY+QV
Sbjct: 588 QLRSLYTQV 596
Catalyzes the desaturation of both long- and medium-chain acyl-CoAs to 2-trans-enoyl-CoAs. Most active with C14-CoA. Activity on long-chain mono-unsaturated substrates is 40% higher than with the corresponding saturated substrates. Seems to be an important factor in the general metabolism of root tips. May be involved in the biosynthesis of jasmonic acid.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 3EC: .EC: 3EC: .EC: 6
>sp|Q9ZQP2|ACO12_ARATH Putative peroxisomal acyl-coenzyme A oxidase 1.2 OS=Arabidopsis thaliana GN=ACX1.2 PE=2 SV=1 Back     alignment and function description
>sp|P07872|ACOX1_RAT Peroxisomal acyl-coenzyme A oxidase 1 OS=Rattus norvegicus GN=Acox1 PE=1 SV=1 Back     alignment and function description
>sp|Q5RC19|ACOX1_PONAB Peroxisomal acyl-coenzyme A oxidase 1 OS=Pongo abelii GN=ACOX1 PE=2 SV=2 Back     alignment and function description
>sp|Q15067|ACOX1_HUMAN Peroxisomal acyl-coenzyme A oxidase 1 OS=Homo sapiens GN=ACOX1 PE=1 SV=3 Back     alignment and function description
>sp|Q9R0H0|ACOX1_MOUSE Peroxisomal acyl-coenzyme A oxidase 1 OS=Mus musculus GN=Acox1 PE=1 SV=5 Back     alignment and function description
>sp|Q8HYL8|ACOX1_PHACI Peroxisomal acyl-coenzyme A oxidase 1 OS=Phascolarctos cinereus GN=ACOX1 PE=1 SV=2 Back     alignment and function description
>sp|Q3SZP5|ACOX1_BOVIN Peroxisomal acyl-coenzyme A oxidase 1 OS=Bos taurus GN=ACOX1 PE=2 SV=1 Back     alignment and function description
>sp|Q9Z1N0|ACOX1_CAVPO Peroxisomal acyl-coenzyme A oxidase 1 OS=Cavia porcellus GN=ACOX1 PE=2 SV=1 Back     alignment and function description
>sp|Q99424|ACOX2_HUMAN Peroxisomal acyl-coenzyme A oxidase 2 OS=Homo sapiens GN=ACOX2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query375
147866564 664 hypothetical protein VITISV_000871 [Viti 0.984 0.555 0.880 0.0
402744131 664 acyl-CoA oxidase 1 [Prunus persica] 0.986 0.557 0.872 0.0
321438027 664 ACX [Gossypium hirsutum] 0.986 0.557 0.854 0.0
297741787 773 unnamed protein product [Vitis vinifera] 0.984 0.477 0.880 0.0
359496678 596 PREDICTED: peroxisomal acyl-coenzyme A o 0.984 0.619 0.880 0.0
109157676 683 Chain A, X-Ray Crystal Structure Of Leac 0.986 0.541 0.854 0.0
350535511 664 peroxisomal acyl-CoA oxidase 1A [Solanum 0.986 0.557 0.854 0.0
58531952 664 peroxisomal acyl-CoA oxidase 1A [Solanum 0.986 0.557 0.851 0.0
357482107 664 Peroxisomal acyl-CoA oxidase 1A [Medicag 0.986 0.557 0.859 0.0
224138652 664 predicted protein [Populus trichocarpa] 0.986 0.557 0.856 0.0
>gi|147866564|emb|CAN79431.1| hypothetical protein VITISV_000871 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/369 (88%), Positives = 346/369 (93%)

Query: 1   MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQ 60
           MKFGNG YN+MDNGVLRF+HVRIPR+QMLMRV QVTREGK VQSNVPRQL+YGTMV+VRQ
Sbjct: 227 MKFGNGGYNSMDNGVLRFDHVRIPRDQMLMRVFQVTREGKCVQSNVPRQLVYGTMVFVRQ 286

Query: 61  TIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRF 120
           TIV+DAS ALSRAVCIATRYS VRRQFGS+NGGPETQVIDYKTQQ+RLFPLLASAYAFRF
Sbjct: 287 TIVSDASSALSRAVCIATRYSVVRRQFGSQNGGPETQVIDYKTQQSRLFPLLASAYAFRF 346

Query: 121 VGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLC 180
           VG+WLKWLY DVTQRLQANDFSTLPEAHACTAGLKSLTT+ATADGIEECRKLCGGHGYLC
Sbjct: 347 VGQWLKWLYMDVTQRLQANDFSTLPEAHACTAGLKSLTTSATADGIEECRKLCGGHGYLC 406

Query: 181 SSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQ 240
           SSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLG G  PVGTT YMGR   LMQ
Sbjct: 407 SSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGSGKQPVGTTAYMGRVADLMQ 466

Query: 241 CHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAH 300
           C C VQ+AEDWLNPS ILEAFEAR+ RMSVACAQNLSKF N EEGFAEL+ADLVEAAVAH
Sbjct: 467 CCCAVQRAEDWLNPSVILEAFEARSARMSVACAQNLSKFANSEEGFAELSADLVEAAVAH 526

Query: 301 CQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLAN 360
           CQLIVVSKFIEKLQ+DIPGKGVK  LEILC+IYAL+L+HK++GDF+ST CIT KQASLAN
Sbjct: 527 CQLIVVSKFIEKLQEDIPGKGVKRQLEILCNIYALYLLHKYVGDFLSTSCITPKQASLAN 586

Query: 361 EQLRSLYSQ 369
           EQLRSLY+Q
Sbjct: 587 EQLRSLYAQ 595

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|402744131|gb|AFQ93693.1| acyl-CoA oxidase 1 [Prunus persica] Back     alignment and taxonomy information
>gi|321438027|gb|ADW84019.1| ACX [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|297741787|emb|CBI33074.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359496678|ref|XP_003635297.1| PREDICTED: peroxisomal acyl-coenzyme A oxidase 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|109157676|pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase From Lycopersicon Esculentum (Tomato) gi|109157677|pdb|2FON|B Chain B, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase From Lycopersicon Esculentum (Tomato) gi|109157678|pdb|2FON|C Chain C, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase From Lycopersicon Esculentum (Tomato) Back     alignment and taxonomy information
>gi|350535511|ref|NP_001234198.1| peroxisomal acyl-CoA oxidase 1A [Solanum lycopersicum] gi|58531948|gb|AAW78689.1| peroxisomal acyl-CoA oxidase 1A [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|58531952|gb|AAW78691.1| peroxisomal acyl-CoA oxidase 1A [Solanum cheesmaniae] Back     alignment and taxonomy information
>gi|357482107|ref|XP_003611339.1| Peroxisomal acyl-CoA oxidase 1A [Medicago truncatula] gi|355512674|gb|AES94297.1| Peroxisomal acyl-CoA oxidase 1A [Medicago truncatula] Back     alignment and taxonomy information
>gi|224138652|ref|XP_002326656.1| predicted protein [Populus trichocarpa] gi|222833978|gb|EEE72455.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query375
TAIR|locus:2129121664 ACX1 "acyl-CoA oxidase 1" [Ara 0.984 0.555 0.804 1.2e-159
TAIR|locus:2058779664 ACX5 "acyl-CoA oxidase 5" [Ara 0.986 0.557 0.770 4e-154
UNIPROTKB|F1NY37662 ACOX1 "Acyl-coenzyme A oxidase 0.968 0.548 0.421 2.2e-73
UNIPROTKB|Q5RC19660 ACOX1 "Peroxisomal acyl-coenzy 0.970 0.551 0.396 2.4e-69
RGD|619757661 Acox1 "acyl-CoA oxidase 1, pal 0.968 0.549 0.413 2.4e-69
UNIPROTKB|F1LQC1602 Acox1 "Acyl-coenzyme A oxidase 0.968 0.602 0.413 2.4e-69
UNIPROTKB|P07872661 Acox1 "Peroxisomal acyl-coenzy 0.968 0.549 0.413 2.4e-69
UNIPROTKB|F5H0M0592 ACOX1 "Acyl-coenzyme A oxidase 0.970 0.614 0.396 3e-69
UNIPROTKB|Q15067660 ACOX1 "Peroxisomal acyl-coenzy 0.970 0.551 0.396 3e-69
UNIPROTKB|E2RAF6661 ACOX1 "Acyl-coenzyme A oxidase 0.970 0.550 0.398 4.9e-69
TAIR|locus:2129121 ACX1 "acyl-CoA oxidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1555 (552.4 bits), Expect = 1.2e-159, P = 1.2e-159
 Identities = 297/369 (80%), Positives = 326/369 (88%)

Query:     2 KFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQT 61
             K GNGAYN+MDNG L F+HVRIPR+QMLMR+S+VTREG+YV S+VP+QL+YGTMVYVRQT
Sbjct:   228 KMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLSKVTREGEYVPSDVPKQLVYGTMVYVRQT 287

Query:    62 IVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFV 121
             IVADAS ALSRAVCIATRYSAVRRQFG+ NGG ETQVIDYKTQQNRLFPLLASAYAFRFV
Sbjct:   288 IVADASNALSRAVCIATRYSAVRRQFGAHNGGIETQVIDYKTQQNRLFPLLASAYAFRFV 347

Query:   122 GEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS 181
             GEWLKWLYTDVT+RL A+DF+TLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYL  
Sbjct:   348 GEWLKWLYTDVTERLAASDFATLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLWC 407

Query:   182 SGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQC 241
             SGLPELFAVYVPACTYEGDN+VL LQVARFLMKTV+QLG G +PVGTT YMGRA  L+QC
Sbjct:   408 SGLPELFAVYVPACTYEGDNVVLQLQVARFLMKTVAQLGSGKVPVGTTAYMGRAAHLLQC 467

Query:   242 HCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFXXXXXXXXXXXXXHC 301
               GVQKAEDWLNP  +LEAFEARA+RM+V CA+NLSKF NQE+GF             HC
Sbjct:   468 RSGVQKAEDWLNPDVVLEAFEARALRMAVTCAKNLSKFENQEQGFQELLADLVEAAIAHC 527

Query:   302 QLIVVSKFIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANE 361
             QLIVVSKFI KL+QDI GKGVK  L  LC+IYAL+L+HKHLGDF+ST CIT KQASLAN+
Sbjct:   528 QLIVVSKFIAKLEQDIGGKGVKKQLNNLCYIYALYLLHKHLGDFLSTNCITPKQASLAND 587

Query:   362 QLRSLYSQV 370
             QLRSLY+QV
Sbjct:   588 QLRSLYTQV 596
GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA
GO:0003997 "acyl-CoA oxidase activity" evidence=IEA;ISS;IMP;IDA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006631 "fatty acid metabolic process" evidence=IEA
GO:0006635 "fatty acid beta-oxidation" evidence=IEA;IDA;NAS
GO:0008152 "metabolic process" evidence=IEA
GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IMP
GO:0005777 "peroxisome" evidence=ISS;IDA
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0002213 "defense response to insect" evidence=IGI;RCA
GO:0009555 "pollen development" evidence=IGI
GO:0009620 "response to fungus" evidence=IEP;RCA
GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA;IMP
GO:0009611 "response to wounding" evidence=IEP;RCA
GO:0005829 "cytosol" evidence=RCA
GO:0009506 "plasmodesma" evidence=IDA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006633 "fatty acid biosynthetic process" evidence=RCA
GO:0009753 "response to jasmonic acid stimulus" evidence=RCA
GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0043069 "negative regulation of programmed cell death" evidence=RCA
GO:0050832 "defense response to fungus" evidence=RCA
TAIR|locus:2058779 ACX5 "acyl-CoA oxidase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1NY37 ACOX1 "Acyl-coenzyme A oxidase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RC19 ACOX1 "Peroxisomal acyl-coenzyme A oxidase 1" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
RGD|619757 Acox1 "acyl-CoA oxidase 1, palmitoyl" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LQC1 Acox1 "Acyl-coenzyme A oxidase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P07872 Acox1 "Peroxisomal acyl-coenzyme A oxidase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F5H0M0 ACOX1 "Acyl-coenzyme A oxidase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q15067 ACOX1 "Peroxisomal acyl-coenzyme A oxidase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RAF6 ACOX1 "Acyl-coenzyme A oxidase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O65202ACOX1_ARATH1, ., 3, ., 3, ., 60.83190.9840.5557yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.3.3LOW CONFIDENCE prediction!
3rd Layer1.3.3.60.914

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_290034
acyl-CoA oxidase (EC-1.3.3.6) (664 aa)
(Populus trichocarpa)
Predicted Functional Partners:
fgenesh4_pm.C_LG_I000162
SubName- Full=Putative uncharacterized protein; (460 aa)
   • •• 0.912
estExt_fgenesh4_pg.C_LG_II1951
acetyl-CoA C-acyltransferase (EC-2.3.1.16) (457 aa)
   • •• 0.912
estExt_Genewise1_v1.C_LG_X3923
hypothetical protein (726 aa)
     •• 0.908
estExt_fgenesh4_pg.C_LG_XVIII0682
SubName- Full=Putative uncharacterized protein; (727 aa)
     •• 0.905
eugene3.00130195
long-chain acyl-CoA synthetase (EC-6.2.1.3) (696 aa)
     •• 0.904
gw1.X.5990.1
long-chain acyl-CoA synthetase (EC-6.2.1.3) (705 aa)
     •• 0.904
estExt_fgenesh4_pm.C_LG_XIV0485
long-chain-fatty-acid-CoA ligase family protein (EC-6.2.1.3) (679 aa)
     •  0.903
estExt_fgenesh4_pg.C_LG_III1161
hypothetical protein (662 aa)
     •  0.902
estExt_Genewise1_v1.C_LG_I8598
hypothetical protein (662 aa)
     •  0.902
grail3.0003071602
long-chain-fatty-acid-CoA ligase family protein (EC-6.2.1.3) (641 aa)
     •  0.901

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query375
PLN02443664 PLN02443, PLN02443, acyl-coenzyme A oxidase 0.0
cd01150610 cd01150, AXO, Peroxisomal acyl-CoA oxidase 1e-101
PTZ00460646 PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provis 2e-55
PLN02636686 PLN02636, PLN02636, acyl-coenzyme A oxidase 2e-49
pfam01756186 pfam01756, ACOX, Acyl-CoA oxidase 9e-33
PLN02312680 PLN02312, PLN02312, acyl-CoA oxidase 1e-30
cd00567327 cd00567, ACAD, Acyl-CoA dehydrogenase 3e-14
COG1960393 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid meta 1e-05
cd01160372 cd01160, LCAD, Long chain acyl-CoA dehydrogenase 0.002
>gnl|CDD|178062 PLN02443, PLN02443, acyl-coenzyme A oxidase Back     alignment and domain information 
 Score =  772 bits (1995), Expect = 0.0
 Identities = 327/370 (88%), Positives = 350/370 (94%)

Query: 1   MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQ 60
           MKFGNGAYNTMDNG LRF+HVRIPR+QMLMR+S+VTREGKYVQS+VPRQL+YGTMVYVRQ
Sbjct: 227 MKFGNGAYNTMDNGFLRFDHVRIPRDQMLMRLSKVTREGKYVQSDVPRQLVYGTMVYVRQ 286

Query: 61  TIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRF 120
           TIVADAS ALSRAVCIATRYSAVRRQFGS++GGPETQVIDYKTQQ+RLFPLLASAYAFRF
Sbjct: 287 TIVADASTALSRAVCIATRYSAVRRQFGSQDGGPETQVIDYKTQQSRLFPLLASAYAFRF 346

Query: 121 VGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLC 180
           VGEWLKWLYTDVTQRL+ANDFSTLPEAHACTAGLKSLTT+ATADGIEECRKLCGGHGYLC
Sbjct: 347 VGEWLKWLYTDVTQRLEANDFSTLPEAHACTAGLKSLTTSATADGIEECRKLCGGHGYLC 406

Query: 181 SSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQ 240
           SSGLPELFAVYVPACTYEGDN+VLLLQVARFLMKTVSQLG G  PVGTT YMGR + L+Q
Sbjct: 407 SSGLPELFAVYVPACTYEGDNVVLLLQVARFLMKTVSQLGSGKKPVGTTAYMGRVQHLLQ 466

Query: 241 CHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAH 300
           C CGVQ AEDWLNPS +LEAFEARA RM+V CAQNLSKF NQE GF EL+ADLVEAAVAH
Sbjct: 467 CRCGVQTAEDWLNPSVVLEAFEARAARMAVTCAQNLSKFENQEAGFQELSADLVEAAVAH 526

Query: 301 CQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLAN 360
           CQLIVVSKFIEKLQQDIPGKGVK  L+ LC+IYAL+L+HKHLGDF+STGCIT KQASLAN
Sbjct: 527 CQLIVVSKFIEKLQQDIPGKGVKKQLQNLCYIYALYLLHKHLGDFLSTGCITPKQASLAN 586

Query: 361 EQLRSLYSQV 370
           +QLRSLYSQV
Sbjct: 587 DQLRSLYSQV 596

Length = 664
>gnl|CDD|173839 cd01150, AXO, Peroxisomal acyl-CoA oxidase Back     alignment and domain information
>gnl|CDD|185639 PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|215342 PLN02636, PLN02636, acyl-coenzyme A oxidase Back     alignment and domain information
>gnl|CDD|201956 pfam01756, ACOX, Acyl-CoA oxidase Back     alignment and domain information
>gnl|CDD|215178 PLN02312, PLN02312, acyl-CoA oxidase Back     alignment and domain information
>gnl|CDD|173838 cd00567, ACAD, Acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|224871 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|173849 cd01160, LCAD, Long chain acyl-CoA dehydrogenase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 375
KOG0136670 consensus Acyl-CoA oxidase [Lipid transport and me 100.0
KOG0135661 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid t 100.0
PLN02443664 acyl-coenzyme A oxidase 100.0
PLN02636686 acyl-coenzyme A oxidase 100.0
PLN02312680 acyl-CoA oxidase 100.0
PTZ00460646 acyl-CoA dehydrogenase; Provisional 100.0
cd01150610 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl 100.0
KOG0140408 consensus Medium-chain acyl-CoA dehydrogenase [Lip 100.0
KOG0139398 consensus Short-chain acyl-CoA dehydrogenase [Lipi 100.0
KOG0141421 consensus Isovaleryl-CoA dehydrogenase [Amino acid 99.97
PRK09463 777 fadE acyl-CoA dehydrogenase; Reviewed 99.95
PRK11561538 isovaleryl CoA dehydrogenase; Provisional 99.94
cd01161409 VLCAD Very long chain acyl-CoA dehydrogenase. VLCA 99.94
cd01151386 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehyd 99.94
KOG0137634 consensus Very-long-chain acyl-CoA dehydrogenase [ 99.94
PRK12341381 putative acyl-CoA dehydrogenase; Provisional 99.94
TIGR03203378 pimD_small pimeloyl-CoA dehydrogenase, small subun 99.93
PLN02526412 acyl-coenzyme A oxidase 99.93
PRK03354380 crotonobetainyl-CoA dehydrogenase; Validated 99.93
cd01162375 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA d 99.93
PRK13026 774 acyl-CoA dehydrogenase; Reviewed 99.93
TIGR03207372 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogen 99.93
cd01155394 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE 99.93
PF01756187 ACOX: Acyl-CoA oxidase; InterPro: IPR002655 Acyl-C 99.93
PTZ00461410 isovaleryl-CoA dehydrogenase; Provisional 99.93
cd01157378 MCAD Medium chain acyl-CoA dehydrogenase. MCADs ar 99.93
COG1960393 CaiA Acyl-CoA dehydrogenases [Lipid metabolism] 99.93
cd01160372 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an 99.93
cd01154418 AidB Proteins involved in DNA damage response, sim 99.93
PLN02519404 isovaleryl-CoA dehydrogenase 99.92
PTZ00456622 acyl-CoA dehydrogenase; Provisional 99.92
PLN02876822 acyl-CoA dehydrogenase 99.91
cd01156376 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA d 99.91
cd01158373 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and 99.91
PF00441150 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal 99.9
cd00567327 ACAD Acyl-CoA dehydrogenase. Both mitochondrial ac 99.9
TIGR03204395 pimC_large pimeloyl-CoA dehydrogenase, large subun 99.89
cd01153407 ACAD_fadE5 Putative acyl-CoA dehydrogenases simila 99.89
cd01159370 NcnH Naphthocyclinone hydroxylase. Naphthocyclinon 99.86
cd01152380 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases 99.86
KOG0138432 consensus Glutaryl-CoA dehydrogenase [Amino acid t 99.85
cd01163377 DszC Dibenzothiophene (DBT) desulfurization enzyme 99.83
PTZ00457520 acyl-CoA dehydrogenase; Provisional 99.77
KOG1469392 consensus Predicted acyl-CoA dehydrogenase [Genera 99.7
TIGR02309477 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxy 99.32
PF08028134 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal 99.15
TIGR02310519 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxy 94.37
COG2368493 Aromatic ring hydroxylase [Secondary metabolites b 90.41
PF03241205 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C termi 83.67
>KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.8e-79  Score=598.14  Aligned_cols=365  Identities=48%  Similarity=0.732  Sum_probs=342.5

Q ss_pred             CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243            1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY   80 (375)
Q Consensus         1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY   80 (375)
                      ||||   ++|+|||++-||||||||+|||+|+.+|.+||+|+.|+.++ ..|++|++.|..++.....++.+|++||+||
T Consensus       239 ~Kmg---~ng~dNGfL~f~nvRIPR~nmLmr~~kV~~dGtyv~p~~~~-l~Y~tMv~vRs~mv~d~a~~La~A~tIAtRY  314 (670)
T KOG0136|consen  239 PKMG---FNGVDNGFLGFDNVRIPRTNMLMRHAKVEPDGTYVKPPHPK-LGYGTMVYVRSLMVMDQARFLAKAATIATRY  314 (670)
T ss_pred             cccc---ccCCccceeeecceeechHhhhhhhheecCCCccccCCccc-cceeeeEEEeehhHHHHHHHHHHHHHHHHHH
Confidence            6999   99999999999999999999999999999999999987666 8999999999999999999999999999999


Q ss_pred             hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHH
Q 017243           81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT  160 (375)
Q Consensus        81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~  160 (375)
                      |.+||||...|+.+|++|+|||+||+||+|.||.+||+++++.++.++|....+++.+||++.++++|+++|++|+++||
T Consensus       315 SaVRRQ~~i~pg~~E~qIlDyqTQQ~rlFP~LA~ayAf~~~g~~l~~~Y~~~~~~l~~g~~s~LpeLHaLS~gLKa~~T~  394 (670)
T KOG0136|consen  315 SAVRRQSEIRPGQPEVQILDYQTQQYRLFPQLARAYAFRFVGEELWELYEDVLKELENGNFSRLPELHALSAGLKAVVTW  394 (670)
T ss_pred             HHHhhccCCCCCCCCceeeechhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhchHHHHHHhhhHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHHHHHhhcCCCCcchhhhhcccchHHhh
Q 017243          161 ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQ  240 (375)
Q Consensus       161 ~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~  240 (375)
                      .+.++++.||..||||||+..++++.+|.++.+.|||||+|.||++|+||+|+|.|.+..+|+++.++++|+......  
T Consensus       395 ~~~~GIE~~R~aCGGHGYs~~Sglp~iY~~~v~~CTYEGEN~VmlLQ~ARfLmKs~~~~~sgk~l~~~v~yl~~~~~~--  472 (670)
T KOG0136|consen  395 DTAQGIEQCRLACGGHGYSQASGLPEIYGVAVGACTYEGENTVLLLQVARFLVKSYAQVLSGKSLSPTVAYLAASALK--  472 (670)
T ss_pred             hhhhHHHHHHHhcCCccchhhcCCccceeeeeeeeeeeccceeehHHHHHHHHHHHHHHhcCCCCCCchhhhhhcccC--
Confidence            999999999999999999999999999999999999999999999999999999999999999888899999754222  


Q ss_pred             hcCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHh----hccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 017243          241 CHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLS----KFTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQQD  316 (375)
Q Consensus       241 ~~~~~~~~~~~~~~~~l~~~~~~r~~~l~~~~~~~l~----~~~~~~~~~n~~~~~~~~la~A~~~~~~l~~F~~~v~~~  316 (375)
                       +.......+|.+ + ++++|++++++++..+++++.    .+.+...+||.++++++++|++|+++++++.|.+.|.+.
T Consensus       473 -~~~~~~~~~~~~-e-~~~a~e~~A~r~~~~a~~~l~~~~~~~~~~e~A~N~~sv~L~~Aa~~H~~~~vvk~f~~kv~~~  549 (670)
T KOG0136|consen  473 -PQLISGAGDWLN-E-YVEAFEHRAARQVWIAAENLLKLMSSGESQEVAWNLTSVELTRAARAHCRLFVVKTFLEKVEKH  549 (670)
T ss_pred             -ccccccccchhH-H-HHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             111233466766 6 999999999999999999864    456788999999999999999999999999999999975


Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHhhhhHHHhc-CCCCHHHHHHHHHHHHHHHHhhcccC
Q 017243          317 IPGKGVKPILEILCHIYALHLVHKHLGDFVST-GCITAKQASLANEQLRSLYSQVFTCV  374 (375)
Q Consensus       317 ~~~~~~~~vL~~L~~LyaL~~I~~~~~~fl~~-g~ls~~q~~~l~~~i~~l~~~lrp~~  374 (375)
                      ..++.+++||++||.||+++.|.+++|+|+.. +|+|+.|++.+++++.++++.|||+|
T Consensus       550 ~~~~~vk~vL~~L~~Ly~~y~il~~~g~fl~~~~~mt~~q~~~v~~~l~~lL~~iRpnA  608 (670)
T KOG0136|consen  550 ISDPAVKEVLKNLLELYLLYEILKNSGDFLRFNNFMTDTQLDQVRDQLYELLTKIRPNA  608 (670)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcCe
Confidence            67889999999999999999999999999998 99999999999999999999999997

>KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PLN02443 acyl-coenzyme A oxidase Back     alignment and domain information
>PLN02636 acyl-coenzyme A oxidase Back     alignment and domain information
>PLN02312 acyl-CoA oxidase Back     alignment and domain information
>PTZ00460 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>cd01150 AXO Peroxisomal acyl-CoA oxidase Back     alignment and domain information
>KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism] Back     alignment and domain information
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism] Back     alignment and domain information
>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism] Back     alignment and domain information
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>PRK11561 isovaleryl CoA dehydrogenase; Provisional Back     alignment and domain information
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase Back     alignment and domain information
>cd01151 GCD Glutaryl-CoA dehydrogenase Back     alignment and domain information
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism] Back     alignment and domain information
>PRK12341 putative acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit Back     alignment and domain information
>PLN02526 acyl-coenzyme A oxidase Back     alignment and domain information
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated Back     alignment and domain information
>cd01162 IBD Isobutyryl-CoA dehydrogenase Back     alignment and domain information
>PRK13026 acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase Back     alignment and domain information
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2 Back     alignment and domain information
>PF01756 ACOX: Acyl-CoA oxidase; InterPro: IPR002655 Acyl-CoA oxidase (ACO) acts on CoA derivatives of fatty acids with chain lengths from 8 to 18 Back     alignment and domain information
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional Back     alignment and domain information
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase Back     alignment and domain information
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism] Back     alignment and domain information
>cd01160 LCAD Long chain acyl-CoA dehydrogenase Back     alignment and domain information
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product Back     alignment and domain information
>PLN02519 isovaleryl-CoA dehydrogenase Back     alignment and domain information
>PTZ00456 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>PLN02876 acyl-CoA dehydrogenase Back     alignment and domain information
>cd01156 IVD Isovaleryl-CoA dehydrogenase Back     alignment and domain information
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases Back     alignment and domain information
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1 Back     alignment and domain information
>cd00567 ACAD Acyl-CoA dehydrogenase Back     alignment and domain information
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit Back     alignment and domain information
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5 Back     alignment and domain information
>cd01159 NcnH Naphthocyclinone hydroxylase Back     alignment and domain information
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26 Back     alignment and domain information
>KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C Back     alignment and domain information
>PTZ00457 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only] Back     alignment and domain information
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component Back     alignment and domain information
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1 Back     alignment and domain information
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component Back     alignment and domain information
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query375
2fon_A683 X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxid 0.0
1w07_A659 Arabidopsis Thaliana Acyl-Coa Oxidase 1 Length = 65 1e-179
1is2_A661 Crystal Structure Of Peroxisomal Acyl-coa Oxidase-i 3e-75
>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase From Lycopersicon Esculentum (Tomato) Length = 683 Back     alignment and structure 
Iteration: 1

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/370 (81%), Positives = 332/370 (89%)
Query: 1   MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQ 60
           MKFGNGAYN+MDNGVL F+HVRIPR+QMLMRVSQVT+EGKYVQS++PRQLLYGTMVYVRQ
Sbjct: 246 MKFGNGAYNSMDNGVLSFDHVRIPRDQMLMRVSQVTKEGKYVQSDIPRQLLYGTMVYVRQ 305
Query: 61  TIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRF 120
           +IVADAS A+SRAVCIATRYSAVRRQFGS+NGG ETQVIDYKTQQNRLFPLLASAYAFRF
Sbjct: 306 SIVADASLAMSRAVCIATRYSAVRRQFGSQNGGQETQVIDYKTQQNRLFPLLASAYAFRF 365
Query: 121 VGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLC 180
           VGEWLKWLYTDVTQRL ANDFSTLPEAHACTAGLKSLTT+ATADGIEECRKLCGGHGYLC
Sbjct: 366 VGEWLKWLYTDVTQRLAANDFSTLPEAHACTAGLKSLTTSATADGIEECRKLCGGHGYLC 425
Query: 181 SSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQ 240
           SSGLPELFAVYVPACTYEGDN+VL LQVARFLMKT+SQLG G  PVGT +YMGR E LMQ
Sbjct: 426 SSGLPELFAVYVPACTYEGDNVVLQLQVARFLMKTISQLGTGKKPVGTVSYMGRIEHLMQ 485
Query: 241 CHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFXXXXXXXXXXXXXH 300
           C   V++AEDWL PSA+LEAFEAR+ RMSVACA+NLSKF NQEEGF             H
Sbjct: 486 CRSDVKQAEDWLKPSAVLEAFEARSARMSVACAKNLSKFENQEEGFAELAADLVEAAVAH 545
Query: 301 CQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLAN 360
           CQLIVVSK+IEKLQQ+IPGKGVK  LE+LC IY+L ++HKH GDF+ TG IT+KQ SLAN
Sbjct: 546 CQLIVVSKYIEKLQQNIPGKGVKQQLEVLCGIYSLFILHKHQGDFLGTGYITSKQGSLAN 605
Query: 361 EQLRSLYSQV 370
           +QLR+LYSQ+
Sbjct: 606 DQLRALYSQL 615
>pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1 Length = 659 Back     alignment and structure
>pdb|1IS2|A Chain A, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From Rat Liver Length = 661 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query375
1w07_A659 Acyl-COA oxidase; oxidoreductase, peroxisomal beta 1e-150
2ddh_A661 Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl 1e-129
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Length = 659 Back     alignment and structure
 Score =  438 bits (1128), Expect = e-150
 Identities = 307/369 (83%), Positives = 337/369 (91%)

Query: 2   KFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQT 61
           K GNGAYN+MDNG L F+HVRIPR+QMLMR+S+VTREG+YV S+VP+QL+YGTMVYVRQT
Sbjct: 228 KMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLSKVTREGEYVPSDVPKQLVYGTMVYVRQT 287

Query: 62  IVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFV 121
           IVADAS ALSRAVCIATRYSAVRRQFG+ NGG ETQVIDYKTQQNRLFPLLASAYAFRFV
Sbjct: 288 IVADASNALSRAVCIATRYSAVRRQFGAHNGGIETQVIDYKTQQNRLFPLLASAYAFRFV 347

Query: 122 GEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS 181
           GEWLKWLYTDVT+RL A+DF+TLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYL  
Sbjct: 348 GEWLKWLYTDVTERLAASDFATLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLWC 407

Query: 182 SGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQC 241
           SGLPELFAVYVPACTYEGDN+VL LQVARFLMKTV+QLG G +PVGTT YMGRA  L+QC
Sbjct: 408 SGLPELFAVYVPACTYEGDNVVLQLQVARFLMKTVAQLGSGKVPVGTTAYMGRAAHLLQC 467

Query: 242 HCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHC 301
             GVQKAEDWLNP  +LEAFEARA+RM+V CA+NLSKF NQE+GF EL ADLVEAA+AHC
Sbjct: 468 RSGVQKAEDWLNPDVVLEAFEARALRMAVTCAKNLSKFENQEQGFQELLADLVEAAIAHC 527

Query: 302 QLIVVSKFIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANE 361
           QLIVVSKFI KL+QDI GKGVK  L  LC+IYAL+L+HKHLGDF+ST CIT KQASLAN+
Sbjct: 528 QLIVVSKFIAKLEQDIGGKGVKKQLNNLCYIYALYLLHKHLGDFLSTNCITPKQASLAND 587

Query: 362 QLRSLYSQV 370
           QLRSLY+QV
Sbjct: 588 QLRSLYTQV 596
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Length = 661 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query375
2ddh_A661 Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl 100.0
1w07_A659 Acyl-COA oxidase; oxidoreductase, peroxisomal beta 100.0
2z1q_A577 Acyl-COA dehydrogenase; FAD, structural genomics, 100.0
3owa_A597 Acyl-COA dehydrogenase; structural genomics, cente 99.98
2uxw_A607 VERY-long-chain specific acyl-COA dehydrogenase; f 99.96
2jif_A404 Short/branched chain specific acyl-COA dehydrogen; 99.96
1egd_A396 Medium chain acyl-COA dehydrogenase; flavoprotein, 99.96
1ukw_A379 Acyl-COA dehydrogenase; oxidoreductase, riken stru 99.95
2dvl_A372 Acyl-COA dehydrogenase; structural genomics, NPPSF 99.95
2d29_A387 Acyl-COA dehydrogenase; structural genomics, NPPSF 99.95
2wbi_A428 Acyl-COA dehydrogenase family member 11; human, ph 99.95
1ivh_A394 Isovaleryl-COA dehydrogenase; oxidoreductase, acyl 99.95
3pfd_A393 Acyl-COA dehydrogenase; structural genomics, seatt 99.95
1buc_A383 Butyryl-COA dehydrogenase; acyl-COA dehydrogenase 99.95
2vig_A391 Short-chain specific acyl-COA dehydrogenase,; fatt 99.95
3mkh_A438 Nitroalkane oxidase; oxidoreductase flavoenzyme, a 99.95
4hr3_A415 Putative acyl-COA dehydrogenase; ssgcid, seattle s 99.95
1rx0_A393 Acyl-COA dehydrogenase family member 8, mitochondr 99.95
3nf4_A387 Acyl-COA dehydrogenase; seattle structural genomic 99.95
3r7k_A403 Probable acyl COA dehydrogenase; ssgcid, structura 99.95
3sf6_A403 Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB 99.95
3swo_A399 Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d 99.95
2pg0_A385 Acyl-COA dehydrogenase; GK1316, geobacillus kausto 99.95
3ii9_A396 Glutaryl-COA dehydrogenase; slipchip, microfluidic 99.95
2ix5_A436 Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, 99.95
3p4t_A403 Putative acyl-COA dehydrogenase; ssgcid, structura 99.95
2eba_A385 Putative glutaryl-COA dehydrogenase; thermus therm 99.95
1siq_A392 GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog 99.94
1r2j_A366 Protein FKBI; polyketide synthase, polyketide, acy 99.94
3mpi_A397 Glutaryl-COA dehydrogenase; alpha-beta fold, oxido 99.94
2or0_A414 Hydroxylase; APC7385, rhodococcus SP. RHA1, struct 99.94
2rfq_A394 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1 99.94
2jbr_A422 P-hydroxyphenylacetate hydroxylase C2 oxygenase C; 99.93
3djl_A541 Protein AIDB; alpha helix, beta-barrel, FAD, flavo 99.92
2c12_A439 Nitroalkane oxidase; oxidoreductase, flavoenzyme, 99.92
3mxl_A395 Nitrososynthase; flavin monooxygenase, acyl-COA de 99.92
3m9v_A439 FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO 99.89
2yyk_A481 4-hydroxyphenylacetate-3-hydroxylase; structurome, 99.69
1u8v_A490 Gamma-aminobutyrate metabolism dehydratase/isomera 99.59
3hwc_A515 Chlorophenol-4-monooxygenase component 2; beta bar 99.35
4g5e_A517 2,4,6-trichlorophenol 4-monooxygenase; oxidoreduct 99.27
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Back     alignment and structure
Probab=100.00  E-value=8e-65  Score=526.68  Aligned_cols=369  Identities=43%  Similarity=0.700  Sum_probs=316.0

Q ss_pred             CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243            1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY   80 (375)
Q Consensus         1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY   80 (375)
                      +|+|   +++.|||+|.|||||||++||||++++|+++|.|.++..++ ..+++|..+|+.+++.++|.+++|++++++|
T Consensus       228 ~k~G---l~g~~~~~v~Fd~VrVP~~~lLg~~~~v~~~G~~~~~~~~~-~~~~~l~~~R~~iaa~~~G~a~~al~~a~~y  303 (661)
T 2ddh_A          228 PKFG---YEEMDNGYLKMDNYRIPRENMLMKYAQVKPDGTYVKPLSNK-LTYGTMVFVRSFLVGNAAQSLSKACTIAIRY  303 (661)
T ss_dssp             CCSS---CTTCCCEEEEESSEEEEGGGBCCSSCEECTTCCEECCC---------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccc---CCCCcceEEEeccEEECHHHhcCcccccCCCCceeccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4788   99999999999999999999999999898889887754455 6788999999999999999999999999999


Q ss_pred             hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHH
Q 017243           81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT  160 (375)
Q Consensus        81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~  160 (375)
                      +..|+|||.+++++|.||++||.+|++|+|+++.+++++++..++...+++.....+.++.....+.+..++++|+++||
T Consensus       304 a~~R~qfg~~~~~~e~~i~~~q~vq~rLa~~~a~~~aar~~~~~aa~~~~~~~~~~~~g~~~~~~~~~~~aa~aK~~at~  383 (661)
T 2ddh_A          304 SAVRRQSEIKQSEPEPQILDFQTQQYKLFPLLATAYAFHFVGRYMKETYLRINESIGQGDLSELPELHALTAGLKAFTTW  383 (661)
T ss_dssp             HHHCBCSCSSTTSCCCBGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHHH
T ss_pred             HhhCcccCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhHHHHHHHHHHHHHH
Confidence            99999999877788999999999999999999999999999999888776443333344433345789999999999999


Q ss_pred             HHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHHHHHhhcCCCCcchhhhhcccch-HHh
Q 017243          161 ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAE-QLM  239 (375)
Q Consensus       161 ~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~~~~~~~~~~~~~~~~~~l~~~~-~~~  239 (375)
                      .+.+++++|+|+|||+||+.+++++++++|+++.+|+||||+|+++++|+.+++.|++..+|....+++.||.+.. ...
T Consensus       384 ~a~~~~~~a~q~~GG~G~~~~~~l~r~~rda~~~~~~eG~~~vl~~~iar~lL~~~~~~~~~~~~~~~~~~l~~~~~~~~  463 (661)
T 2ddh_A          384 TANAGIEECRMACGGHGYSHSSGIPNIYVTFTPACTFEGENTVMMLQTARFLMKIYDQVRSGKLVGGMVSYLNDLPSQRI  463 (661)
T ss_dssp             HHHHHHHHHHHHTTHHHHSGGGSHHHHHHHHGGGGTSSSCHHHHHHHHHHHHHHHHHHHHHTCCCCGGGGGGGGCCC---
T ss_pred             HHHHHHHHHHHHhCcccccccCcHHHHHHhcceeeEecCchHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHhhhhhhc
Confidence            9999999999999999999999999999999999999999999999999999999988766665567889997643 111


Q ss_pred             hhcC--CCccccccCCHHHHHHHHHHHHHHHHHHHHHHHhh----ccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017243          240 QCHC--GVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSK----FTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKL  313 (375)
Q Consensus       240 ~~~~--~~~~~~~~~~~~~l~~~~~~r~~~l~~~~~~~l~~----~~~~~~~~n~~~~~~~~la~A~~~~~~l~~F~~~v  313 (375)
                      ...+  ...+..++.|+++++++|++|+.+++..+++++++    +++.+++||+++++++++|+||+++++++.|++.|
T Consensus       464 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~g~~~~~a~n~~~~~~~~~a~a~~~~~~~~~f~~~~  543 (661)
T 2ddh_A          464 QPQQVAVWPTMVDINSLEGLTEAYKLRAARLVEIAAKNLQTHVSHRKSKEVAWNLTSVDLVRASEAHCHYVVVKVFSDKL  543 (661)
T ss_dssp             -----------CCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             cccccccccchhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111  11345789999999999999999999999888743    45678999999999999999999999999999999


Q ss_pred             hccCCCCChHHHHHHHHHHHHHHHHHhhhhHHHhcCCCCHHHHHHHHHHHHHHHHhhcccC
Q 017243          314 QQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTCV  374 (375)
Q Consensus       314 ~~~~~~~~~~~vL~~L~~LyaL~~I~~~~~~fl~~g~ls~~q~~~l~~~i~~l~~~lrp~~  374 (375)
                      ++ ++++++++||.+||+||+|+.|++|++||+++|+||+++++.|++.|.+||.+|||++
T Consensus       544 ~~-~~~~~~~~~L~~l~~L~~l~~i~~~~~~~l~~~~~s~~~~~~~~~~~~~l~~~lrp~a  603 (661)
T 2ddh_A          544 PK-IQDKAVQAVLRNLCLLYSLYGISQKGGDFLEGSIITGAQLSQVNARILELLTLIRPNA  603 (661)
T ss_dssp             GG-CSSHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSSCHHHHHHHHHHHHHHHHHHGGGH
T ss_pred             Hh-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            87 7788999999999999999999999999999999999999999999999999999986
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Back     alignment and structure
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Back     alignment and structure
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Back     alignment and structure
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Back     alignment and structure
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Back     alignment and structure
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Back     alignment and structure
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Back     alignment and structure
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Back     alignment and structure
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens} Back     alignment and structure
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Back     alignment and structure
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Back     alignment and structure
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Back     alignment and structure
>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus} Back     alignment and structure
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Back     alignment and structure
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Back     alignment and structure
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Back     alignment and structure
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Back     alignment and structure
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Back     alignment and structure
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Back     alignment and structure
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Back     alignment and structure
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Back     alignment and structure
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Back     alignment and structure
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Back     alignment and structure
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Back     alignment and structure
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP} Back     alignment and structure
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A Back     alignment and structure
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A* Back     alignment and structure
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A* Back     alignment and structure
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Back     alignment and structure
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Back     alignment and structure
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Back     alignment and structure
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A* Back     alignment and structure
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia} Back     alignment and structure
>4g5e_A 2,4,6-trichlorophenol 4-monooxygenase; oxidoreductase; 2.50A {Cupriavidus necator JMP134} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 375
d1w07a2198 a.29.3.2 (A:462-659) Acyl-coenzyme A oxidase 1, do 6e-46
d1w07a1189 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, do 6e-45
d2ddha1183 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase- 2e-40
d2ddha2181 a.29.3.2 (A:475-655) Peroxisomal acyl-CoA oxidase- 2e-30
d1w07a3271 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domai 3e-13
d2ddha3267 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, 3e-10
>d1w07a2 a.29.3.2 (A:462-659) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 198 Back     information, alignment and structure

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: acyl-CoA oxidase C-terminal domains
domain: Acyl-coenzyme A oxidase 1, domains 3 and 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  153 bits (389), Expect = 6e-46
 Identities = 103/134 (76%), Positives = 117/134 (87%)

Query: 237 QLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEA 296
            L+QC  GVQKAEDWLNP  +LEAFEARA+RM+V CA+NLSKF NQE+GF EL ADLVEA
Sbjct: 2   HLLQCRSGVQKAEDWLNPDVVLEAFEARALRMAVTCAKNLSKFENQEQGFQELLADLVEA 61

Query: 297 AVAHCQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQA 356
           A+AHCQLIVVSKFI KL+QDI GKGVK  L  LC+IYAL+L+HKHLGDF+ST CIT KQA
Sbjct: 62  AIAHCQLIVVSKFIAKLEQDIGGKGVKKQLNNLCYIYALYLLHKHLGDFLSTNCITPKQA 121

Query: 357 SLANEQLRSLYSQV 370
           SLAN+QLRSLY+QV
Sbjct: 122 SLANDQLRSLYTQV 135
>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 189 Back     information, alignment and structure
>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 183 Back     information, alignment and structure
>d2ddha2 a.29.3.2 (A:475-655) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 181 Back     information, alignment and structure
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 271 Back     information, alignment and structure
>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 267 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query375
d1w07a1189 Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale 100.0
d2ddha1183 Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 { 100.0
d1jqia1153 Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus n 99.95
d1siqa1154 Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie 99.95
d1w07a2198 Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale 99.95
d1rx0a1153 Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) 99.95
d1ivha1151 Isovaleryl-CoA dehydrogenase, C-domain {Human (Hom 99.94
d1r2ja1153 Protein FkbI {Streptomyces hygroscopicus [TaxId: 1 99.94
d3mdea1154 Medium chain acyl-CoA dehydrogenase, C-domain {Pig 99.94
d2ddha2181 Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 { 99.94
d2d29a1153 Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI 99.94
d1buca1151 Butyryl-CoA dehydrogenase, C-domain {Megasphaera e 99.94
d2c12a1170 Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55 99.94
d1ukwa1152 Medium chain acyl-CoA dehydrogenase, C-domain {The 99.93
d1u8va1215 4-hydroxybutyryl-CoA dehydratase AbfD, C-terminal 80.39
>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: acyl-CoA oxidase C-terminal domains
domain: Acyl-coenzyme A oxidase 1, domains 3 and 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.2e-41  Score=298.77  Aligned_cols=185  Identities=90%  Similarity=1.397  Sum_probs=173.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 017243           50 LLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLY  129 (375)
Q Consensus        50 ~~~~~l~~~R~~~~~~~~~~~~~al~ia~rYa~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~  129 (375)
                      +.|++|+.+|+.+++.+.|.+++|+++|++|+.+|+|||.+++++|.||++||.+|++|+++.+..++++++..++.+.+
T Consensus         4 ~~~~~m~~~R~~ia~~a~g~~~~al~iA~~Ya~~R~qfG~~~~~~~~pI~~~q~vq~~La~~~a~~~a~~~~~~~~~~~~   83 (189)
T d1w07a1           4 LVYGTMVYVRQTIVADASNALSRAVCIATRYSAVRRQFGAHNGGIETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLY   83 (189)
T ss_dssp             GCTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCBCSCC---CCCCBGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999987778889999999999999999999999999999999988


Q ss_pred             HHHHHHhccCCCCChhhHHHHhhhhhHHHHHHHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHH
Q 017243          130 TDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVA  209 (375)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~ia  209 (375)
                      ++.....+.++.+...+++.+++++|+++||.+.+++++|+|+|||+||+.+++++++++|+++.+||||||+||+++|+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~a~qi~GG~Gy~~~~~i~r~~rD~~~~~i~EGtn~Vl~~~ia  163 (189)
T d1w07a1          84 TDVTERLAASDFATLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLWCSGLPELFAVYVPACTYEGDNVVLQLQVA  163 (189)
T ss_dssp             HHHHHHTTTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGGBGGGSHHHHHHHHGGGGTTTSCHHHHHHHHH
T ss_pred             HHHHHhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhcCeeeCCCChHHHHHhcCcccceecCHHHHHHHHHH
Confidence            88777777777777888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCcchhhhhccc
Q 017243          210 RFLMKTVSQLGYGNMPVGTTTYMGR  234 (375)
Q Consensus       210 r~ll~~~~~~~~~~~~~~~~~~l~~  234 (375)
                      |+|+|.+++..+|+.|.+++.||++
T Consensus       164 r~llk~~~~~~~g~~~~~~~~~l~~  188 (189)
T d1w07a1         164 RFLMKTVAQLGSGKVPVGTTAYMGR  188 (189)
T ss_dssp             HHHHHHHTTTTTSCCCCGGGGGGGG
T ss_pred             HHHHHHHHHhhCCCCCcHHHHHhhc
Confidence            9999999999999999999999864
>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w07a2 a.29.3.2 (A:462-659) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Back     information, alignment and structure
>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase, C-domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2ddha2 a.29.3.2 (A:475-655) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain {Megasphaera elsdenii [TaxId: 907]} Back     information, alignment and structure
>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Back     information, alignment and structure
>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase, C-domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1u8va1 a.29.3.1 (A:276-490) 4-hydroxybutyryl-CoA dehydratase AbfD, C-terminal domain {Clostridium aminobutyricum [TaxId: 33953]} Back     information, alignment and structure