Citrus Sinensis ID: 017244

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-----
MCSSKSKLHSATQINGRPVLQPTSNQVPSLEKRNSIKKTGSPKSPITTDNVNSKSFTKSLLSPPVSPKLKSPRPAAVKRGNDPNVLNTSAEKIMTPKKLASLVKKPKNVGVAPCYDSSLIVEAPGSIAAARREHVAIMQEQRKLRIAHYGRTKSAKFEGKVPGLDSFANGDNNDREEKRCSFITPNSDPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAEVVAKFTEKKMTSLSANYAIDLSQVRGIVDNSIRILEVKKQFGSFDKYLWGFVNHKPINTQYRSSQKIPVKTSKSEAISKDMVKKGFRFVGPTVIHSFMQAAGLTNDHLITCTRHLQCTALASHQPAVAPAL
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcccccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHcccccccccc
ccccccccccEEEEccccEEcccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccHHccccccccccccccccccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEcccccccccccccccccccccccccccccEEEEEccHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccccccHHccccccHHHHHHHHHHHHccccEccHHHHHHHHHHHccccccccccccHHHHHHHHHccccccccc
mcssksklhsatqingrpvlqptsnqvpslekrnsikktgspkspittdnvnsksftksllsppvspklksprpaavkrgndpnvlntsaekimtpKKLASLvkkpknvgvapcydssliveapgSIAAARREHVAIMQEQRKLRIAhygrtksakfegkvpgldsfangdnndreekrcsfitpnsdpiyvayhdeewgvpvhddkLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAEVVAKFTEKKMTSLSANYAIDLSQVRGIVDNSIRILEVKKQFGSFDKYLWGfvnhkpintqyrssqkipvktskseAISKDMVKKGFRFVGPTVIHSFMQAAGLTNDHLITCTRHLQCTalashqpavapal
mcssksklhsatqingrpvlqptsnqvpslekrnsikktgspkspittdnvnsksftksllsppvspklksprpaavkrgndpnvlntsaekimtpkkLASLVKKPKNVGVAPCYDSSLIVEAPGSIAAARREHVAIMQEQRKLRiahygrtksakfegkvpgldsfangdnndreeKRCSFITPNSDPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAEVVAKFTEKKMTslsanyaidlsqvrgiVDNSIRILEVKKQFGSFDKYLWGFVNHKpintqyrssqkipvktskseaiskdMVKKGFRFVGPTVIHSFMQAAGLTNDHLITCTRHLQCTALASHQPAVAPAL
MCSSKSKLHSATQINGRPVLQPTSNQVPSLEKRNSIKKTGSPKSPITTDNVNSKSFTksllsppvspklkspRPAAVKRGNDPNVLNTSAEKIMTPKKLASLVKKPKNVGVAPCYDSSLIVEAPGSIAAARREHVAIMQEQRKLRIAHYGRTKSAKFEGKVPGLDSFANGDNNDREEKRCSFITPNSDPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAEVVAKFTEKKMTSLSANYAIDLSQVRGIVDNSIRILEVKKQFGSFDKYLWGFVNHKPINTQYRSSQKIPVKTSKSEAISKDMVKKGFRFVGPTVIHSFMQAAGLTNDHLITCTRHLQCTALASHQPAVAPAL
*********************************************************************************************************PKNVGVAPCYDSSLIVEAPGSIAAARREHVAIMQEQRKLRIAHYG*****************************CSFITPNSDPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAEVVAKFTEKKMTSLSANYAIDLSQVRGIVDNSIRILEVKKQFGSFDKYLWGFVNHKPINTQY*******************MVKKGFRFVGPTVIHSFMQAAGLTNDHLITCTRHLQCTALA**********
**************NGRPVLQP*************************************************************************************************************************************************************CSFITPNSDPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAEVVAKFTEKKMTSLSANYAIDLSQVRGIVDNSIRILEVKKQFGSFDKYLWGFVNHKPINTQYRSSQKIPVKTSKSEAISKDMVKKGFRFVGPTVIHSFMQAAGLTNDHLITCTRHLQCTA************
***********TQINGRPVLQPT***********************TTDNVNSKSFTKSLLSPPVSPKLKSPRPAAVKRGNDPNVLNTSAEKIMTPKKLASLVKKPKNVGVAPCYDSSLIVEAPGSIAAARREHVAIMQEQRKLRIAHYGRTKSAKFEGKVPGLDSFANGDNNDREEKRCSFITPNSDPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAEVVAKFTEKKMTSLSANYAIDLSQVRGIVDNSIRILEVKKQFGSFDKYLWGFVNHKPINTQY**************AISKDMVKKGFRFVGPTVIHSFMQAAGLTNDHLITCTRHLQCTALASHQPAVAPAL
********HSATQINGRPVLQPTSNQVPS********************************************************************************************E*PGSIAAARREHVAIMQEQRKLRIAHYGRTK************************KRCSFITPNSDPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAEVVAKFTEKKMTSLSANYAIDLSQVRGIVDNSIRILEVKKQFGSFDKYLWGFVNHKPINTQYRSSQKIPVKTSKSEAISKDMVKKGFRFVGPTVIHSFMQAAGLTNDHLITCTRHLQCTALASH********
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
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MCSSKSKLHSATQINGRPVLQPTSNQVPSLEKRNSIKKTGSPKSPITTDNVNSKSFTKSLLSPPVSPKLKSPRPAAVKRGNDPNVLNTSAEKIMTPKKLASLVKKPKNVGVAPCYDSSLIVEAPGSIAAARREHVAIMQEQRKLRIAHYGRTKSAKFEGKVPGLDSFANGDNNDREEKRCSFITPNSDPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAEVVAKFTEKKMTSLSANYAIDLSQVRGIVDNSIRILEVKKQFGSFDKYLWGFVNHKPINTQYRSSQKIPVKTSKSEAISKDMVKKGFRFVGPTVIHSFMQAAGLTNDHLITCTRHLQCTALASHQPAVAPAL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query375 2.2.26 [Sep-21-2011]
Q7VG78 1375 Probable GMP synthase [gl yes no 0.509 0.138 0.418 2e-43
P05100187 DNA-3-methyladenine glyco N/A no 0.472 0.946 0.414 2e-38
P44321185 DNA-3-methyladenine glyco yes no 0.466 0.945 0.396 3e-33
>sp|Q7VG78|GUAA_HELHP Probable GMP synthase [glutamine-hydrolyzing] OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1) GN=guaA PE=3 SV=1 Back     alignment and function desciption
 Score =  176 bits (447), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 85/203 (41%), Positives = 126/203 (62%), Gaps = 12/203 (5%)

Query: 171 DNND--REEKRCSFITPNSDP---IYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWT 225
           D+N+  RE+ RC++ T   +    +Y  YHD EWG P+H+DK LFE LVL   Q G  W 
Sbjct: 777 DSNEGVREKVRCAWATDKDEAARKLYEDYHDTEWGEPLHEDKKLFEHLVLEGFQAGLSWI 836

Query: 226 SVLKKRQAFREAFSGFDAEVVAKFTEKKMTSLSANYAI--DLSQVRGIVDNSIRILEVKK 283
           ++LKKR+AFR AF  FD  +VA + E K+  L  N  I  + +++   + N+   + V++
Sbjct: 837 TILKKREAFRVAFDDFDPHIVANYDEDKIKELMRNEGIIRNRAKIEAAIINAKAFMAVQR 896

Query: 284 QFGSFDKYLWGFVNHKPINTQYRSSQKIPVKTSKSEAISKDMVKKGFRFVGPTVIHSFMQ 343
           +FGSFDKY+WGFV  KPI   + S   +P  T  S+ I+KD+ K+GF+FVG T +++ MQ
Sbjct: 897 EFGSFDKYIWGFVGGKPIINAFESIADLPASTPLSDKIAKDLKKRGFKFVGTTTMYAMMQ 956

Query: 344 AAGLTNDHLITCTR-----HLQC 361
           + G+ NDHL +C +      +QC
Sbjct: 957 SIGMVNDHLTSCFKCNSSLGMQC 979
Catalyzes the synthesis of GMP from XMP.
Helicobacter hepaticus (strain ATCC 51449 / 3B1) (taxid: 235279)
EC: 6EC: .EC: 3EC: .EC: 5EC: .EC: 2
>sp|P05100|3MG1_ECOLI DNA-3-methyladenine glycosylase 1 OS=Escherichia coli (strain K12) GN=tag PE=1 SV=1 Back     alignment and function description
>sp|P44321|3MGA_HAEIN DNA-3-methyladenine glycosylase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=tag PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query375
224057904373 predicted protein [Populus trichocarpa] 0.92 0.924 0.678 1e-145
147816530398 hypothetical protein VITISV_042519 [Viti 0.989 0.932 0.659 1e-145
225424952398 PREDICTED: uncharacterized protein LOC10 0.989 0.932 0.661 1e-144
255578495403 DNA-3-methyladenine glycosylase, putativ 0.970 0.903 0.659 1e-140
224072406354 predicted protein [Populus trichocarpa] 0.856 0.906 0.721 1e-136
356525726400 PREDICTED: probable GMP synthase [glutam 0.965 0.905 0.626 1e-132
224101295403 predicted protein [Populus trichocarpa] 0.976 0.908 0.603 1e-130
356557064400 PREDICTED: probable GMP synthase [glutam 0.965 0.905 0.606 1e-130
224109118401 predicted protein [Populus trichocarpa] 0.957 0.895 0.583 1e-129
255549509404 DNA-3-methyladenine glycosylase, putativ 0.976 0.905 0.604 1e-128
>gi|224057904|ref|XP_002299382.1| predicted protein [Populus trichocarpa] gi|222846640|gb|EEE84187.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 266/392 (67%), Positives = 296/392 (75%), Gaps = 47/392 (11%)

Query: 1   MCSSKSKLHSAT--------QINGRPVLQPTSNQVPSLEKRNSIKKTGSPKSPI------ 46
           MCS K +LH +         +INGRPVLQP SNQVPSLE+RNS+KK    KSP       
Sbjct: 1   MCSFKFRLHRSANNIATPIAKINGRPVLQPKSNQVPSLERRNSLKKNSPAKSPTQEPAAV 60

Query: 47  --------TTDNVNSKSFTKSLLSPPVSPKLKSPRPAAVKRGNDPNVLNTSAEKIMTPKK 98
                     +   +K+   S LSPP+SPKLKSP P AVKRGNDP+ LNTSAEK+ TP  
Sbjct: 61  PPIPLMQPAGNAAGTKTKQPSGLSPPISPKLKSPVPPAVKRGNDPDGLNTSAEKVWTP-- 118

Query: 99  LASLVKKPKNVGVAPCYDSSLIVEAPGSIAAARREHVAIMQEQRKLRIAHYGRTKSAKFE 158
                                 +E+PGSIAAARREHVA+MQEQRK+RIAHYGRTK AK+ 
Sbjct: 119 ----------------------LESPGSIAAARREHVAVMQEQRKMRIAHYGRTKPAKYH 156

Query: 159 GKVPGLDSFANGDNNDREEKRCSFITPNSDPIYVAYHDEEWGVPVHDDKLLFELLVLTAA 218
           GKV   DS A  +   REEKRCSFITPNSDPIYVAYHDEEWGVPVHDDK+LFELLVLT A
Sbjct: 157 GKVVPADSPAT-NTISREEKRCSFITPNSDPIYVAYHDEEWGVPVHDDKMLFELLVLTGA 215

Query: 219 QVGSDWTSVLKKRQAFREAFSGFDAEVVAKFTEKKMTSLSANYAIDLSQVRGIVDNSIRI 278
           QVGSDWTSVLKKR+AFREAFSGFDAEVVAKFTEKK+ S+SA Y ID SQVRG+VDNS +I
Sbjct: 216 QVGSDWTSVLKKREAFREAFSGFDAEVVAKFTEKKIASISAEYGIDTSQVRGVVDNSNKI 275

Query: 279 LEVKKQFGSFDKYLWGFVNHKPINTQYRSSQKIPVKTSKSEAISKDMVKKGFRFVGPTVI 338
           +EVK++FGSFDKYLW +VNHKPI TQY+S QKIPVKTSKSE ISKDMVK+GFRFVGPTVI
Sbjct: 276 MEVKREFGSFDKYLWEYVNHKPIFTQYKSCQKIPVKTSKSETISKDMVKRGFRFVGPTVI 335

Query: 339 HSFMQAAGLTNDHLITCTRHLQCTALASHQPA 370
           HSFMQA GL NDHLITC RHLQ TALAS  P+
Sbjct: 336 HSFMQAGGLRNDHLITCPRHLQYTALASQHPS 367

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147816530|emb|CAN68394.1| hypothetical protein VITISV_042519 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225424952|ref|XP_002263612.1| PREDICTED: uncharacterized protein LOC100256507 [Vitis vinifera] gi|297738175|emb|CBI27376.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255578495|ref|XP_002530111.1| DNA-3-methyladenine glycosylase, putative [Ricinus communis] gi|223530365|gb|EEF32255.1| DNA-3-methyladenine glycosylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224072406|ref|XP_002303720.1| predicted protein [Populus trichocarpa] gi|222841152|gb|EEE78699.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356525726|ref|XP_003531474.1| PREDICTED: probable GMP synthase [glutamine-hydrolyzing]-like [Glycine max] Back     alignment and taxonomy information
>gi|224101295|ref|XP_002312220.1| predicted protein [Populus trichocarpa] gi|118486806|gb|ABK95238.1| unknown [Populus trichocarpa] gi|222852040|gb|EEE89587.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356557064|ref|XP_003546838.1| PREDICTED: probable GMP synthase [glutamine-hydrolyzing]-like [Glycine max] Back     alignment and taxonomy information
>gi|224109118|ref|XP_002315089.1| predicted protein [Populus trichocarpa] gi|222864129|gb|EEF01260.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255549509|ref|XP_002515807.1| DNA-3-methyladenine glycosylase, putative [Ricinus communis] gi|223545076|gb|EEF46588.1| DNA-3-methyladenine glycosylase, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query375
TAIR|locus:2087710312 AT3G12710 [Arabidopsis thalian 0.693 0.833 0.654 8e-91
TAIR|locus:2156329353 AT5G44680 [Arabidopsis thalian 0.64 0.679 0.677 8.6e-88
TAIR|locus:2037268329 AT1G75090 [Arabidopsis thalian 0.490 0.559 0.548 1.3e-57
TAIR|locus:2174373347 AT5G57970 [Arabidopsis thalian 0.885 0.956 0.385 6.8e-56
TAIR|locus:2200447352 AT1G15970 [Arabidopsis thalian 0.661 0.704 0.466 4.3e-54
TAIR|locus:1006230719311 AT1G13635 [Arabidopsis thalian 0.517 0.623 0.510 1.1e-53
TAIR|locus:2025697327 AT1G80850 [Arabidopsis thalian 0.490 0.562 0.543 1.9e-53
TIGR_CMR|GSU_0567191 GSU_0567 "DNA-3-methyladenine 0.477 0.937 0.464 6.2e-46
TIGR_CMR|CBU_0383212 CBU_0383 "DNA-3-methyladenine 0.48 0.849 0.407 5.7e-43
TIGR_CMR|CPS_2351194 CPS_2351 "DNA-3-methyladenine 0.488 0.943 0.393 2.1e-36
TAIR|locus:2087710 AT3G12710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 883 (315.9 bits), Expect = 8.0e-91, Sum P(2) = 8.0e-91
 Identities = 174/266 (65%), Positives = 206/266 (77%)

Query:   104 KKPKNVGVAPCYDSSLIVEAPGSIAAARREHVAIMQEQRKLRIAHYGRTKSA-KF-EGKV 161
             KK K+      Y S LI EAPGSIAA RRE VA  Q  RKL+IAHYGR+KS   F   KV
Sbjct:    50 KKSKSFKEGDSYSSWLITEAPGSIAAVRREQVAAQQALRKLKIAHYGRSKSTINFTSSKV 109

Query:   162 PGLDSFANGDNNDREEKRCSFITPNSDPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVG 221
               L    N + N   + RCSF+TP SDPIYVAYHDEEWGVPVHDDK LFELL L+ AQVG
Sbjct:   110 VPL---LNPNPNPHPQ-RCSFLTPTSDPIYVAYHDEEWGVPVHDDKTLFELLTLSGAQVG 165

Query:   222 SDWTSVLKKRQAFREAFSGFDAEVVAKFTEKKMTSLSANYAIDLSQVRGIVDNSIRILEV 281
             SDWTS L+KR  +R+AF  F+AEVVAK TEK+M ++S  Y I++S+VRG+V+N+ +I+E+
Sbjct:   166 SDWTSTLRKRHDYRKAFMEFEAEVVAKLTEKEMNAISIEYKIEMSKVRGVVENAKKIVEI 225

Query:   282 KKQFGSFDKYLWGFVNHKPINTQYRSSQKIPVKTSKSEAISKDMVKKGFRFVGPTVIHSF 341
             KK F S +KYLWGFVNHKPI+T Y+   KIPVKTSKSE+ISKDMV++GFRFVGPTV+HSF
Sbjct:   226 KKAFVSLEKYLWGFVNHKPISTNYKLGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSF 285

Query:   342 MQAAGLTNDHLITCTRHLQCTALASH 367
             MQAAGLTNDHLITC RH  CT LA++
Sbjct:   286 MQAAGLTNDHLITCCRHAPCTLLATN 311
GO:0003824 "catalytic activity" evidence=IEA
GO:0006281 "DNA repair" evidence=IEA;ISS
GO:0006284 "base-excision repair" evidence=IEA
GO:0008725 "DNA-3-methyladenine glycosylase activity" evidence=IEA;ISS
GO:0006306 "DNA methylation" evidence=RCA
TAIR|locus:2156329 AT5G44680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037268 AT1G75090 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174373 AT5G57970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200447 AT1G15970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:1006230719 AT1G13635 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025697 AT1G80850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0567 GSU_0567 "DNA-3-methyladenine glycosylase I" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0383 CBU_0383 "DNA-3-methyladenine glycosidase I" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_2351 CPS_2351 "DNA-3-methyladenine glycosylase I" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.2.20LOW CONFIDENCE prediction!
3rd Layer3.2.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00021072001
SubName- Full=Chromosome chr1 scaffold_22, whole genome shotgun sequence; (398 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query375
pfam03352179 pfam03352, Adenine_glyco, Methyladenine glycosylas 1e-100
COG2818188 COG2818, Tag, 3-methyladenine DNA glycosylase [DNA 9e-72
TIGR00624179 TIGR00624, tag, DNA-3-methyladenine glycosylase I 8e-51
PRK10353187 PRK10353, PRK10353, 3-methyl-adenine DNA glycosyla 3e-50
>gnl|CDD|190612 pfam03352, Adenine_glyco, Methyladenine glycosylase Back     alignment and domain information 
 Score =  294 bits (755), Expect = e-100
 Identities = 95/175 (54%), Positives = 130/175 (74%), Gaps = 2/175 (1%)

Query: 186 NSDPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAEV 245
            SDP+YVAYHDEEWGVPVHDD+ LFELL L   Q G  W ++LKKR+AFREAF+GFD E 
Sbjct: 3   TSDPLYVAYHDEEWGVPVHDDRKLFELLCLEGFQAGLSWITILKKREAFREAFAGFDPEK 62

Query: 246 VAKFTEKKMTSLSANYAIDLS--QVRGIVDNSIRILEVKKQFGSFDKYLWGFVNHKPINT 303
           VA FTE  +  L A+  I  +  ++   ++N+  IL+++++FGSF  YLW FV+ KPI  
Sbjct: 63  VAAFTEADVERLLADPGIIRNRLKIEATINNARAILKLQEEFGSFSAYLWSFVDGKPIVN 122

Query: 304 QYRSSQKIPVKTSKSEAISKDMVKKGFRFVGPTVIHSFMQAAGLTNDHLITCTRH 358
           +++S  ++P KT  S+AISKD+ K+GF+FVGPT++++FMQA G+ NDHL+ C RH
Sbjct: 123 RWKSLAEVPAKTPLSDAISKDLKKRGFKFVGPTIVYAFMQAVGMVNDHLVDCFRH 177

The DNA-3-methyladenine glycosylase I is constitutively expressed and is specific for the alkylated 3-methyladenine DNA. Length = 179
>gnl|CDD|225374 COG2818, Tag, 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|129711 TIGR00624, tag, DNA-3-methyladenine glycosylase I Back     alignment and domain information
>gnl|CDD|182401 PRK10353, PRK10353, 3-methyl-adenine DNA glycosylase I; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 375
PRK10353187 3-methyl-adenine DNA glycosylase I; Provisional 100.0
TIGR00624179 tag DNA-3-methyladenine glycosylase I. This family 100.0
PF03352179 Adenine_glyco: Methyladenine glycosylase; InterPro 100.0
COG2818188 Tag 3-methyladenine DNA glycosylase [DNA replicati 100.0
PRK13913218 3-methyladenine DNA glycosylase; Provisional 95.89
TIGR01083191 nth endonuclease III. This equivalog model identif 95.76
TIGR03252177 uncharacterized HhH-GPD family protein. This model 95.66
cd00056158 ENDO3c endonuclease III; includes endonuclease III 95.18
smart00478149 ENDO3c endonuclease III. includes endonuclease III 95.1
PRK10702211 endonuclease III; Provisional 93.99
PF00730108 HhH-GPD: HhH-GPD superfamily base excision DNA rep 93.44
COG0177211 Nth Predicted EndoIII-related endonuclease [DNA re 92.48
PRK10880 350 adenine DNA glycosylase; Provisional 88.49
TIGR01084275 mutY A/G-specific adenine glycosylase. This equiva 87.33
PRK01229208 N-glycosylase/DNA lyase; Provisional 84.61
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.1e-84  Score=590.78  Aligned_cols=181  Identities=41%  Similarity=0.789  Sum_probs=177.3

Q ss_pred             CCCCCCCCCCCCchhhhhhhcCCCccccChHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhcCCCHHHHhcCCHHHHHH
Q 017244          177 EKRCSFITPNSDPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAEVVAKFTEKKMTS  256 (375)
Q Consensus       177 ~~RC~W~~~~~dply~~YHD~EWG~Pv~DDr~LFEmL~LEgfQAGLSW~tVLkKReafReAF~gFD~ekVA~~tEedIer  256 (375)
                      |.||.|++  +||+|++|||+|||+|+|||+.|||+||||+|||||||.|||+||++||+||+||||++||+|+|+|||+
T Consensus         1 m~rC~W~~--~~~l~~~YHD~eWG~P~~dd~~LFE~L~Le~~QAGLSW~tIL~Kre~fr~aF~~Fd~~~VA~~~e~die~   78 (187)
T PRK10353          1 MERCGWVS--QDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVER   78 (187)
T ss_pred             CCCCCCCC--CChHHHHhhhccCCCcCCCcHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCHHHHhCCCHHHHHH
Confidence            46999985  8999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCcchhH--HHHHHHHhhHHHHHHHHHhhCCHHHhcccccCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCCccc
Q 017244          257 LSANYAIDL--SQVRGIVDNSIRILEVKKQFGSFDKYLWGFVNHKPINTQYRSSQKIPVKTSKSEAISKDMVKKGFRFVG  334 (375)
Q Consensus       257 Ll~D~gIIR--~KI~AVI~NArail~i~~E~GSF~~ylWsFv~~kpi~~~~~~~~~iP~~t~lS~~iSKdLKKrGFkFVG  334 (375)
                      ||+|++|||  +||+|||+||+++++|++|||||++|||+||+++||++++.+..++|++|++|++|||+||||||+|||
T Consensus        79 Ll~d~~IIRnr~KI~Avi~NA~~~l~i~~e~gSf~~ylW~fv~~~p~~~~~~~~~~~P~~t~~S~~lskdLKkrGFkFvG  158 (187)
T PRK10353         79 LVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFADFVWSFVNHQPQVTQATTLSEIPTSTPASDALSKALKKRGFKFVG  158 (187)
T ss_pred             HhcCchhHHhHHHHHHHHHHHHHHHHHHHhcCCHHHHHhhccCCCcccCCccchhcCCCCCHHHHHHHHHHHHcCCcccC
Confidence            999999997  799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHhcccccccccCcchh
Q 017244          335 PTVIHSFMQAAGLTNDHLITCTRHL  359 (375)
Q Consensus       335 PTtiYSFMQAvG~VNDHl~~C~~~~  359 (375)
                      ||||||||||+||||||+++|+++.
T Consensus       159 pt~~ysfmqA~G~vndH~~~C~~~~  183 (187)
T PRK10353        159 TTICYSFMQACGLVNDHVVGCCCHP  183 (187)
T ss_pred             cHHHHHHHHHHCCccccccCccccC
Confidence            9999999999999999999999884

>TIGR00624 tag DNA-3-methyladenine glycosylase I Back     alignment and domain information
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3 Back     alignment and domain information
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK13913 3-methyladenine DNA glycosylase; Provisional Back     alignment and domain information
>TIGR01083 nth endonuclease III Back     alignment and domain information
>TIGR03252 uncharacterized HhH-GPD family protein Back     alignment and domain information
>cd00056 ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases Back     alignment and domain information
>smart00478 ENDO3c endonuclease III Back     alignment and domain information
>PRK10702 endonuclease III; Provisional Back     alignment and domain information
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4 Back     alignment and domain information
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK10880 adenine DNA glycosylase; Provisional Back     alignment and domain information
>TIGR01084 mutY A/G-specific adenine glycosylase Back     alignment and domain information
>PRK01229 N-glycosylase/DNA lyase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query375
1lmz_A187 Solution Structure Of 3-Methyladenine Dna Glycosyla 3e-39
2ofk_A183 Crystal Structure Of 3-Methyladenine Dna Glycosylas 9e-38
2ofi_A184 Crystal Structure Of 3-Methyladenine Dna Glycosylas 4e-36
4ai4_A188 Crystal Structure Of E38q Mutant Of 3-Methyladenine 2e-34
4aia_A188 The Structural Basis Of 3-Methyladenine Recognition 2e-34
2jg6_A186 Crystal Structure Of A 3-Methyladenine Dna Glycosyl 3e-34
4ai5_A188 Crystal Structure Of Y16f Of 3-Methyladenine Dna Gl 8e-34
>pdb|1LMZ|A Chain A, Solution Structure Of 3-Methyladenine Dna Glycosylase I (Tag) Length = 187 Back     alignment and structure 
Iteration: 1

 Score =  159 bits (401), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 74/181 (40%), Positives = 111/181 (61%), Gaps = 4/181 (2%)
Query: 178 KRCSFITPNSDPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREA 237
           +RC +++   DP+Y+AYHD EWGVP  D K LFE++ L   Q G  W +VLKKR+ +R  
Sbjct: 2   ERCGWVS--QDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRAC 59
Query: 238 FSGFDAEVVAKFTEKKMTSLSANYAI--DLSQVRGIVDNSIRILEVKKQFGSFDKYLWGF 295
           F  FD   VA   E+ +  L  +  I     +++ I+ N+   L++++    F  ++W F
Sbjct: 60  FHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFADFVWSF 119
Query: 296 VNHKPINTQYRSSQKIPVKTSKSEAISKDMVKKGFRFVGPTVIHSFMQAAGLTNDHLITC 355
           VNH+P  TQ  +  +IP  T  S+A+SK + K+GF+FVG T+ +SFMQA GL NDH++ C
Sbjct: 120 VNHQPQMTQATTLSEIPTSTPASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVGC 179
Query: 356 T 356
Sbjct: 180 C 180
>pdb|2OFK|A Chain A, Crystal Structure Of 3-Methyladenine Dna Glycosylase I (Tag) Length = 183 Back     alignment and structure
>pdb|2OFI|A Chain A, Crystal Structure Of 3-Methyladenine Dna Glycosylase I (Tag) Bound To Dna3MA Length = 184 Back     alignment and structure
>pdb|4AI4|A Chain A, Crystal Structure Of E38q Mutant Of 3-Methyladenine Dna Glycosylase I From Staphylococcus Aureus Length = 188 Back     alignment and structure
>pdb|4AIA|A Chain A, The Structural Basis Of 3-Methyladenine Recognition By 3-Methyladenine Dna Glycosylase I (Tag) From Staphylococcus Aureus Length = 188 Back     alignment and structure
>pdb|2JG6|A Chain A, Crystal Structure Of A 3-Methyladenine Dna Glycosylase I From Staphylococcus Aureus Length = 186 Back     alignment and structure
>pdb|4AI5|A Chain A, Crystal Structure Of Y16f Of 3-Methyladenine Dna Glycosylase I (Tag) In Complex With 3-Methyladenine Length = 188 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query375
2jg6_A186 DNA-3-methyladenine glycosidase; 3-methyladenine-D 1e-107
2ofk_A183 3-methyladenine DNA glycosylase I, constitutive; D 1e-107
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A Length = 186 Back     alignment and structure
 Score =  311 bits (800), Expect = e-107
 Identities = 67/186 (36%), Positives = 107/186 (57%), Gaps = 4/186 (2%)

Query: 178 KRCSFITPNSDPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREA 237
             C+F T   DP+Y+ YHD  WG P++D K LF+LL L +   G  W ++LKK++A+ EA
Sbjct: 2   NECAFGT--KDPVYLNYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEA 59

Query: 238 FSGFDAEVVAKFTEKKMTSLSANYAIDLSQ--VRGIVDNSIRILEVKKQFGSFDKYLWGF 295
           F  F+ E VA+ T + +  L     I   +  +  IV+ +   L++++ +GSF K+LW +
Sbjct: 60  FYDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSY 119

Query: 296 VNHKPINTQYRSSQKIPVKTSKSEAISKDMVKKGFRFVGPTVIHSFMQAAGLTNDHLITC 355
           VN KP + QY  +         +  +SKD+ + GF+F+GP  + SF++AAGL + HL  C
Sbjct: 120 VNGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGPVTVFSFLEAAGLYDAHLKDC 179

Query: 356 TRHLQC 361
               + 
Sbjct: 180 PSKPKH 185
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A* Length = 183 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query375
2jg6_A186 DNA-3-methyladenine glycosidase; 3-methyladenine-D 100.0
2ofk_A183 3-methyladenine DNA glycosylase I, constitutive; D 100.0
3n0u_A219 Probable N-glycosylase/DNA lyase; structural genom 97.44
1kea_A221 Possible G-T mismatches repair enzyme; DNA repair, 96.75
1orn_A226 Endonuclease III; DNA repair, DNA glycosylase, [4F 96.22
1pu6_A218 3-methyladenine DNA glycosylase; helix-hairpin-hel 96.16
3n5n_X287 A/G-specific adenine DNA glycosylase; alpha-helice 96.15
2yg9_A225 DNA-3-methyladenine glycosidase II, putative; hydr 95.97
2abk_A211 Endonuclease III; DNA-repair, DNA glycosylase; 1.8 95.15
2h56_A233 DNA-3-methyladenine glycosidase; 10174367, EC 3.2. 95.01
3fhg_A207 Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel 94.96
3fhf_A214 Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel 94.82
1kg2_A225 A/G-specific adenine glycosylase; DNA repair, hydr 94.56
3fsp_A 369 A/G-specific adenine glycosylase; protein-DNA comp 94.55
4e9f_A161 Methyl-CPG-binding domain protein 4; HHH DNA glyco 93.74
4b21_A232 Probable DNA-3-methyladenine glycosylase 2; hydrol 92.96
3s6i_A228 DNA-3-methyladenine glycosylase 1; DNA glycosylase 92.29
3i0w_A290 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8- 89.09
2jhn_A295 ALKA, 3-methyladenine DNA-glycosylase; DNA repair, 85.66
1mpg_A282 ALKA, 3-methyladenine DNA glycosylase II; DNA repa 85.49
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A Back     alignment and structure
Probab=100.00  E-value=5.2e-88  Score=614.50  Aligned_cols=181  Identities=37%  Similarity=0.736  Sum_probs=177.4

Q ss_pred             CCCCCCCCCCCCchhhhhhhcCCCccccChHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhcCCCHHHHhcCCHHHHHH
Q 017244          177 EKRCSFITPNSDPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAEVVAKFTEKKMTS  256 (375)
Q Consensus       177 ~~RC~W~~~~~dply~~YHD~EWG~Pv~DDr~LFEmL~LEgfQAGLSW~tVLkKReafReAF~gFD~ekVA~~tEedIer  256 (375)
                      |+||.|++  +||+|++|||+|||+|+|||+.|||+||||+|||||||.|||+|||+||+||+||||++||.|+|+|||+
T Consensus         1 m~RC~W~~--~~ply~~YHD~EWG~Pv~Dd~~LFE~L~LEgfQAGLSW~tIL~KRe~fR~AF~~FD~~~VA~~~e~dve~   78 (186)
T 2jg6_A            1 MNECAFGT--KDPVYLNYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEAFYDFEPEKVAQMTAQDIDR   78 (186)
T ss_dssp             CTTTTTTC--CCHHHHHHHHHTTTSCCCCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTGGGCHHHHTTCCHHHHHH
T ss_pred             CCCCCCCC--CChHHHHHHHhccCCcccCcHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcCCCHHHHhCCCHHHHHH
Confidence            57999985  8999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCcchhH--HHHHHHHhhHHHHHHHHHhhCCHHHhcccccCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCCccc
Q 017244          257 LSANYAIDL--SQVRGIVDNSIRILEVKKQFGSFDKYLWGFVNHKPINTQYRSSQKIPVKTSKSEAISKDMVKKGFRFVG  334 (375)
Q Consensus       257 Ll~D~gIIR--~KI~AVI~NArail~i~~E~GSF~~ylWsFv~~kpi~~~~~~~~~iP~~t~lS~~iSKdLKKrGFkFVG  334 (375)
                      ||+|++|||  +||+|+|+||+++++|++|||||++|||+||+++||+|++.+..++|++|++|++||||||||||+|||
T Consensus        79 Ll~d~gIIRnr~KI~A~i~NA~~~l~i~~e~gsf~~ylW~fv~~~p~~~~~~~~~~vp~~t~~S~~lsKdLKkrGFkFvG  158 (186)
T 2jg6_A           79 LMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSYVNGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLG  158 (186)
T ss_dssp             HTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHSCHHHHHHGGGTTSCEECCCCSGGGCCSCCHHHHHHHHHHHTTTCCSCC
T ss_pred             HhcCccchhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHhcCCCCCccCCccchhhcCCCCHHHHHHHHHHHHCCCeeec
Confidence            999999986  799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHhcccccccccCcchh
Q 017244          335 PTVIHSFMQAAGLTNDHLITCTRHL  359 (375)
Q Consensus       335 PTtiYSFMQAvG~VNDHl~~C~~~~  359 (375)
                      ||||||||||+||||||+++|+++.
T Consensus       159 pt~~YafmQA~G~vndH~~~C~~~~  183 (186)
T 2jg6_A          159 PVTVFSFLEAAGLYDAHLKDCPSKP  183 (186)
T ss_dssp             HHHHHHHHHHTTSEECCCTTCTTCC
T ss_pred             hHHHHHHHHHhcccCccccCccccC
Confidence            9999999999999999999999874
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A* Back     alignment and structure
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima} Back     alignment and structure
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2 Back     alignment and structure
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A* Back     alignment and structure
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A* Back     alignment and structure
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens} Back     alignment and structure
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A Back     alignment and structure
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1 Back     alignment and structure
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans} Back     alignment and structure
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus} Back     alignment and structure
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A* Back     alignment and structure
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A Back     alignment and structure
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A* Back     alignment and structure
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A Back     alignment and structure
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A* Back     alignment and structure
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe} Back     alignment and structure
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A Back     alignment and structure
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A Back     alignment and structure
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 375
d1nkua_187 a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (T 4e-79
>d1nkua_ a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (Tag) {Escherichia coli [TaxId: 562]} Length = 187 Back     information, alignment and structure

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: 3-Methyladenine DNA glycosylase I (Tag)
domain: 3-Methyladenine DNA glycosylase I (Tag)
species: Escherichia coli [TaxId: 562]

 Score =  239 bits (610), Expect = 4e-79
 Identities = 74/183 (40%), Positives = 112/183 (61%), Gaps = 4/183 (2%)

Query: 178 KRCSFITPNSDPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREA 237
           +RC +++   DP+Y+AYHD EWGVP  D K LFE++ L   Q G  W +VLKKR+ +R  
Sbjct: 2   ERCGWVS--QDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRAC 59

Query: 238 FSGFDAEVVAKFTEKKMTSLSANYAIDLS--QVRGIVDNSIRILEVKKQFGSFDKYLWGF 295
           F  FD   VA   E+ +  L  +  I     +++ I+ N+   L++++    F  ++W F
Sbjct: 60  FHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFADFVWSF 119

Query: 296 VNHKPINTQYRSSQKIPVKTSKSEAISKDMVKKGFRFVGPTVIHSFMQAAGLTNDHLITC 355
           VNH+P  TQ  +  +IP  T  S+A+SK + K+GF+FVG T+ +SFMQA GL NDH++ C
Sbjct: 120 VNHQPQMTQATTLSEIPTSTPASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVGC 179

Query: 356 TRH 358
             +
Sbjct: 180 CCY 182

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query375
d1nkua_187 3-Methyladenine DNA glycosylase I (Tag) {Escherich 100.0
d1pu6a_217 3-Methyladenine DNA glycosylase III (MagIII) {Heli 96.63
d1keaa_217 Thymine-DNA glycosylase {Archaeon Methanobacterium 96.27
d1orna_214 Endonuclease III {Escherichia coli [TaxId: 562]} 95.2
d2abka_211 Endonuclease III {Escherichia coli [TaxId: 562]} 94.61
d1ngna_144 Mismatch-specific thymine glycosylase domain of th 94.38
d1kg2a_224 Catalytic domain of MutY {Escherichia coli [TaxId: 93.43
d1rrqa1221 Catalytic domain of MutY {Bacillus stearothermophi 91.08
d1mpga1183 3-Methyladenine DNA glycosylase II (gene alkA or a 82.65
>d1nkua_ a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (Tag) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: 3-Methyladenine DNA glycosylase I (Tag)
domain: 3-Methyladenine DNA glycosylase I (Tag)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.3e-84  Score=590.44  Aligned_cols=182  Identities=41%  Similarity=0.768  Sum_probs=178.7

Q ss_pred             CCCCCCCCCCCCchhhhhhhcCCCccccChHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhcCCCHHHHhcCCHHHHHH
Q 017244          177 EKRCSFITPNSDPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAEVVAKFTEKKMTS  256 (375)
Q Consensus       177 ~~RC~W~~~~~dply~~YHD~EWG~Pv~DDr~LFEmL~LEgfQAGLSW~tVLkKReafReAF~gFD~ekVA~~tEedIer  256 (375)
                      |+||+|++  +||+|++|||+|||+|+|||+.|||+||||+|||||||.|||+||++||+||+||||++||.|+|+|||+
T Consensus         1 ~~RC~W~~--~~~~~~~YHD~eWG~p~~dD~~LFE~L~Le~fQaGLsW~~IL~Kr~~fr~aF~~Fd~~~vA~~~e~~ie~   78 (187)
T d1nkua_           1 MERCGWVS--QDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVER   78 (187)
T ss_dssp             CCCCSSCC--SCHHHHHHHHHSSSSCCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHTCCHHHHHH
T ss_pred             CCCCCCCC--CChHHHHHHhccCCCcCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCCCHHHHHcCCHHHHHH
Confidence            68999985  8999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCcchhH--HHHHHHHhhHHHHHHHHHhhCCHHHhcccccCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCCccc
Q 017244          257 LSANYAIDL--SQVRGIVDNSIRILEVKKQFGSFDKYLWGFVNHKPINTQYRSSQKIPVKTSKSEAISKDMVKKGFRFVG  334 (375)
Q Consensus       257 Ll~D~gIIR--~KI~AVI~NArail~i~~E~GSF~~ylWsFv~~kpi~~~~~~~~~iP~~t~lS~~iSKdLKKrGFkFVG  334 (375)
                      ||+|++|||  +||+|||+||+++++|++|+|||++|||+|++++|++|++.+..+||++|++|++|||+||||||+|||
T Consensus        79 Ll~d~~IIRNr~KI~Avi~NAr~~l~i~~e~gsf~~~lw~f~~~~p~~~~~~~~~~ip~~t~~s~~lsk~LKk~GfkFvG  158 (187)
T d1nkua_          79 LVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFADFVWSFVNHQPQMTQATTLSEIPTSTPASDALSKALKKRGFKFVG  158 (187)
T ss_dssp             HHTCCSSCCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTTCCEECCCSSGGGSCSCCHHHHHHHHHHHHHTCCCCC
T ss_pred             HhccCCeeechHHHHHHHHHHHHHHHHHHhcCCHHHHHHhcCCCCCcCCCccCHHHhhcCCHHHHHHHHHHHhcCCeecC
Confidence            999999986  799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHhcccccccccCcchhh
Q 017244          335 PTVIHSFMQAAGLTNDHLITCTRHLQ  360 (375)
Q Consensus       335 PTtiYSFMQAvG~VNDHl~~C~~~~~  360 (375)
                      ||||||||||+||||||+++|++|..
T Consensus       159 pt~~ysfmqa~G~vndH~~~C~~~~~  184 (187)
T d1nkua_         159 TTICYSFMQACGLVNDHVVGCCCYPG  184 (187)
T ss_dssp             HHHHHHHHHHHTSEECCCSSSSSCCS
T ss_pred             hHHHHHHHHHcCCcCcccCCCCCCCC
Confidence            99999999999999999999999865
>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]} Back     information, alignment and structure
>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1mpga1 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosylase II (gene alkA or aidA) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure